LOCUS       DANHOL010000001        51514 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.001, whole genome shotgun sequence.
ACCESSION   DANHOL010000001 DANHOL010000000
VERSION     DANHOL010000001.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 51514)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 51514)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..51514
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.001"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            381..725
                     /gene="rbfA"
                     /locus_tag="PTC08_000001"
     CDS             381..725
                     /gene="rbfA"
                     /locus_tag="PTC08_000001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017724307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HDK5681541.1"
                     /translation="MNMRAERVGEQMKKELMDIINNKLKDPRVGFLTITDVQPTNDLS
                     LAKVYLTVLGSDKERENTFKGLEKAKGFIKSEIGQRMRLRIVPDLQFEYDESIEYGNR
                     IERLIQDLNHND"
     gene            810..1727
                     /gene="truB"
                     /locus_tag="PTC08_000002"
     CDS             810..1727
                     /gene="truB"
                     /locus_tag="PTC08_000002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HDK5681542.1"
                     /translation="MYHGILPVYKERGLTSHDVVFKLRKILKTKKVGHTGTLDPEVDG
                     VLPICIGQATKVSDYVMEMGKTYRAEVTLGFSTTTEDQTGDVLAREIVTVDQFDANQV
                     DAVLHSFKGWTTQIPPMYSSVKVNGKKLYEYARNGETVERPKRQIHISHIARISDLIF
                     ENDIVRFSIEVTCGKGTYIRTLATDIGRALHVPAHMSLLTRTMSGGFSLDQALTLALI
                     EQSHHDDTLQNQLLPLAYGLKGLPSFHVQNESDKMKIKNGQKFAKGYFNVPFEQQLVM
                     VDSDNDDVLAIYEVHPSRQDEIKPKKVFN"
     gene            1742..2713
                     /locus_tag="PTC08_000003"
     CDS             1742..2713
                     /locus_tag="PTC08_000003"
                     /EC_number="2.7.1.26"
                     /EC_number="2.7.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional riboflavin kinase/FAD synthetase"
                     /protein_id="HDK5681543.1"
                     /translation="MEVIEITHPIQAEQYIQEDVAMALGFFDGLHRGHQALFDELDRV
                     AKEKDLKKAVMTFDPHPSVVLNPKQKRTTYITPLDDKIELLGEQNIDYCLVVNFSSRF
                     AEVTPDEFVQDYLVKNHARVIIAGFDFTFGKYGKGNMAMLQEYQAQFESITIGKQDLN
                     REKISTTAIREALKTGHLAKANEQLGYRYRMKGTVVQGEKRGRTIGFPTANIEPSDDY
                     VWPTLGVYAVSMTIGSSDQIYRGVANIGVKPTFHDDLPQAVIEVNIFDFTENIYGERV
                     TIYWHHYIRPELKFDGIDPLVAQMNDDKARAKHLLAVDFGDDVSYNV"
     gene            2814..3083
                     /gene="rpsO"
                     /locus_tag="PTC08_000004"
     CDS             2814..3083
                     /gene="rpsO"
                     /locus_tag="PTC08_000004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011275926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HDK5681544.1"
                     /translation="MAISQERKNELIKEYRTHETDTGSPEVQIAVLTAEITALNDHLR
                     IHKKDHHSRRGLLKMVGRRRHLLNYLRDKDIQRYRELIKSLGIRR"
     gene            3242..5335
                     /gene="pnp"
                     /locus_tag="PTC08_000005"
     CDS             3242..5335
                     /gene="pnp"
                     /locus_tag="PTC08_000005"
                     /EC_number="2.7.7.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HDK5681545.1"
                     /translation="MSQEKKVFKTEWANQPLTIETGQLAKQANGAVLVRYGDTVVLST
                     ATASKEPRDGDFFPLTVNYEEKMYAAGKIPGGFKKREGRPGDEATLTARLIDRPIRPL
                     FPDGYRHDVQIINTVLSADPNCSPEMAAMIGSSMALSVSDIPFQGPIAGVNVGYVDGE
                     YVINPNLEQREKSRLDLEVAGHKDAVNMVEAGASEITEAEMLEAILFGHEEIKRLCAF
                     QEEIIAHLQPEKREFIPEEKNQTLIDSVTQMTKDENLNGAIQTFDKQERDANLDAIKE
                     RILANFENEEDPENEALLKEVGTIINTLIKDEVRRLIADEKIRPDGRKPDEIRPLSSE
                     VGLLPRAHGSGLFTRGQTQALSVLTLGSISEYQIIDGLGEEEHKRFMHHYNFPNFSVG
                     ETGPVRAPGRREIGHGALGERALRYIIPDEKTFPYTVRIVSEVLESNGSSSQASICGS
                     TLALMDAGVPIKAPVAGIAMGLVTREESYTILTDIQGMEDALGDMDFKVAGTTEGITA
                     IQMDIKIDGLTKEVIEEALEQARKGRLAILEHMMQTIDQPRKELSAYAPKVEIMQIKP
                     EKIRDVIGPGGKQINEIIDATGVKLDIEQDGTVFIGSTEQDMINQARAWIESIVREAE
                     VGQVYDAKVKRIEKFGAFVELFPGKDALVHISQISNERINKVEDVLNMGDTLKVKVTE
                     IDKQGRVNASHKVLL"
     gene            5846..7519
                     /locus_tag="PTC08_000006"
     CDS             5846..7519
                     /locus_tag="PTC08_000006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002455407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease J"
                     /protein_id="HDK5681546.1"
                     /translation="MNLVKKKNKDIRIIPLGGVGEIAKNMYIVEVDDEMFMLDAGLKF
                     PEDEMLGIDIVIPDIQYVLENKHKLKGIFLTHGHEHAIGAVSYILEQVEAPVYGSKLT
                     IGLVKENLKARQINKKIRYYVVNNESVMRFKGVNITFFNTTHSIPDSLGVCIHTSYGA
                     IVYTGEFKFDQSLHGHYAPDMKKMAELGEEGVFALLSDSTEAEKPGYNTPENVIESHM
                     FDAFAKVTGRLIVSCYASNFIRIQQVLNIANRLNRKVSFLGRSLESSFSIARKMGYFN
                     IPKDLLIPMSEVENYPKNEVIIIATGMQGEPVEALSQMARQKHKIMNIQKGDSVFLAI
                     TASANMEVIIGNTLNELVRAGAHIIPNNKKIHASSHGCMEELKLMLNMMKPEYFIPIQ
                     GEFKMQIAHAKLASEAGVNPEKIFLAEAGDVIHYDGEDMSLNEKVNAGNVLIDGIGVG
                     DVGNIVLRDRHLLAEDGIFIAVVTLDPKNRRIAAGPEIQSRGFVYVRESEALLKEAEE
                     KVREIVEAGLQEKRIEWSEMKQNMRDQVSKLLFESTRRRPMIIPVISEI"
     gene            7658..10021
                     /locus_tag="PTC08_000007"
     CDS             7658..10021
                     /locus_tag="PTC08_000007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA translocase FtsK"
                     /protein_id="HDK5681547.1"
                     /translation="MAQTKKRKSQTTRNRKRTSKKKQNDTPMRFTLVIVMAIVIMLGV
                     FQLGLVGIAIDSFFNYLFGLTRYLTYFLLLIALGFIAYNGKLPKTRRLTGSIVLQIAL
                     LFVAQLYFMATGGMRAKREPVLSYVFQSYDAAEHMQFGGGLFGFYLMHVVLPLISLAG
                     VVLLTLVLLVSSGILLLKKRHRDVAKVWLEQFKQSTASSYEKVKAHQSERRVTRKEKK
                     EQKRLEREQQRAAEPKDVSDFPEVDIPEEEPTDYPSIPIFGHHSVEVDAPSQPVQNEM
                     TPPTQPDIPKRHKAETETHSEVERSGSEGSITEAGAAENLQYEIPPLSLLKEPKRQQT
                     TSKTEVQRKGKLLETTLKNFGVDAKVTQIKIGPAVTQYEVQPAQGVKVSRIVNLHNDI
                     ALALAAKDIRIEAPIPGKSAVGIEVPNQKVAIVTLKEVLDEKFPAKNKLEVALGRDIS
                     GEPITAELNKMPHLLVAGSTGSGKSVCINGIITSILLNAKPHEVKLMMIDPKMVELNV
                     YNGIPHLLTPVVTNPHKAAQALERVVAEMERRYDLFQHSGTRNIEGYNDFITRKNKEL
                     EEKEALLPYIVVIVDELADLMMVAGKDVETAITRITQMARAAGIHLIIATQRPSVDVI
                     TGLIKNNIPSRIAFAVSSQTDSRTIIDSGGAEKLLGKGDMLFIKNGGSTRTRVQGAFL
                     SDQEVQTIVDYVVAQQKANYVKEMEPDAVTEGSTASESDDPLYKEAYLFVLEQQKAST
                     SLLQRQFRIGYNRASRIMDDLERNQVIGPQKGSKPRQILVDLNGGEV"
     gene            10027..10743
                     /locus_tag="PTC08_000008"
     CDS             10027..10743
                     /locus_tag="PTC08_000008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HDK5681548.1"
                     /translation="MSVNPDVNIVKEWILKEIEAENIKPGESLPGLLAIARQLDVTTD
                     NVQVAIHELVTEQIITQNFEEGARVKIPQPFFYPLDELMSIGRMISDKGYESGTVFLS
                     LDEEIASLDDCKVMQLEPNSPITVIERIRTANSQPVVYCLDKVTTNVLAHFGTHNQQT
                     SILKAIEAESHQTIAYAETEMEAISYEPYISDALEADPQDGLMLLRQVHYTEDGTPIL
                     YSLNYFKSSLVKFRTIRKRL"
     gene            10777..12051
                     /locus_tag="PTC08_000009"
     CDS             10777..12051
                     /locus_tag="PTC08_000009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HDK5681549.1"
                     /translation="MKQLQDYPDQRISVLSTNKFKTTTMTFKFMAPLDKKTMTQRSLL
                     SKLLVRATQQFPTDKVFNQYLSELYGAYVNSYVSKYKDRHVITVTLEIVNERYLLDDE
                     SLFDKGIALLKEVILNPLVKNGAFDETFVAQEKSLLKKKLTAIEDNKSQIAYLRLLKH
                     MFGEHPYRYMAAGDLDEIDSITATDLYDTYRSMLNDDYCSVYVVGNVEEEATIQHIQS
                     EFNIQPFTYQATQFGQHIQHDAPVNEVIEQDSVDQAKLNMGFRFPTQYGEKDFYAFLV
                     FNMMFGGDPSSVLFNEVREQKSLAYSIHSQIDGKNGFLFVMSGVSAKDYQLAKETIIE
                     AFNRFKTGDFTEDKMALAKKIILSGRKESKDRPKNMIEMMHNQLLLEVPETDDQYEAR
                     IQAVKHEDIQRLCQNAHLDTIYILTKEDDTDE"
     gene            12044..13333
                     /locus_tag="PTC08_000010"
     CDS             12044..13333
                     /locus_tag="PTC08_000010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HDK5681550.1"
                     /translation="MNKTYYQQIDETVYHSTLANGLNMFIIPKKDFQKTFVTYTTQFG
                     SLDHRFKPHGADEFVSVPDGVAHFLEHKLFEKEEGDLFTEFAEHDAQVNAFTSFDRTS
                     YLFSATNHIDDNILRLLKMVESPYFSEASVEKEKGIIAEEIKMYQEQPGYRLMFNTLR
                     AMYQDHPVRVDIAGSVESIYEITKDDLYLCYETFYHPSNMVLFVVGDVDPEHIENLVR
                     THEDARGIVAQPEIERDPLNEPIEVIEHQVVESMALQSPRIMLGLKHPVYDLSRRQGV
                     KEDIEMSFFFEMIYGEETNFYQSLLSQDLIDDTFSYQTVIEPTYSFSLITSATTEPEQ
                     LKTLLLDELRARIGTLDDQHAFDLLKRQFIGEYISSLNAPEYIANQSTKFYFDGVSLF
                     ELLNVIDSITLDTMNETVRRRIDMNALVDSRLEIKKP"
     gene            13330..14034
                     /locus_tag="PTC08_000011"
     CDS             13330..14034
                     /locus_tag="PTC08_000011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HDK5681551.1"
                     /translation="MKAIVIGGSGTIGRAITHDLLSNGYEVIVTYHHTPLATLMDEFQ
                     GQPVQFVQLDLSQPVNLEEKLGFVRNLDALIYASGHSLFGMLQDMTDTDIHEAYQVHV
                     FHFIKMTQYFVSQLIQSPHGRIVAISSIWGETGASFETIYSSMKAAQIGFVKSLAKEL
                     ARTSVTVNAIAPGVVAGSMTDGLDHAARTALLEEVPQNRWVDPNEIAHATRFLLSPLS
                     QSVTGTVQRINGGWYC"
     gene            14091..14936
                     /locus_tag="PTC08_000012"
     CDS             14091..14936
                     /locus_tag="PTC08_000012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YmfK family protein"
                     /protein_id="HDK5681552.1"
                     /translation="MITREKREWYLEYQINVNRAGLLGDVSSLLGMMGINIGTINGID
                     QSIRAFIIKSDSEEKIKRFETLLKEIDDISLRVLREPELKDRLAVRHGRYVKQDEHDK
                     KIFRFERDDLGLLVDFMAELFKEEGHKLIGIRGMPRVGKTESIVAGSVSAHKKWLFIS
                     STLIKQTVRSSLIKGEYDKDHVYIIDGAVTARETNPKHQELVKEVMTLPSVKVVEHPD
                     LFVEASDYIMDDFDYIIELRAEENQEIEYEEMKKKTVRSKNNLDFGDTFGGFGDGFGD
                     GFGSL"
     gene            14955..15350
                     /locus_tag="PTC08_000013"
     CDS             14955..15350
                     /locus_tag="PTC08_000013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDK5681553.1"
                     /translation="MRTIGEVLQSKRERLGMTLTELEKRTQIQRETLVDIEQNRFDQF
                     KHPNHIRGFIQKYAQSVNIDGRILMEKHHEELPAVQHQAHVILEQIAQQKEVLTFTQT
                     DQQPKKVAILIGLLTAVTAVLWVLMTLML"
     gene            15392..15976
                     /gene="pgsA"
                     /locus_tag="PTC08_000014"
     CDS             15392..15976
                     /gene="pgsA"
                     /locus_tag="PTC08_000014"
                     /EC_number="2.7.8.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--glycerol-3-phosphate
                     3-phosphatidyltransferase"
                     /protein_id="HDK5681554.1"
                     /translation="MNIPNQITVFRVILIPIFMLFALVDFGMGQVTFLGGQPIRIEFL
                     ISGIIFILASLSDFLDGYLARKWQIVTNMGKFLDPLADKLLVSAALIVLVELGLTNSV
                     VAVIIIAREFAVTGLRLLQIEQGFVSAAGQLGKIKTAVTMVALILILLGEPFSQWIGF
                     SLGQVLLYIGVFFTVLSGIEYFYKGRDVFLQDKK"
     gene            16197..17372
                     /locus_tag="PTC08_000015"
     CDS             16197..17372
                     /locus_tag="PTC08_000015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CinA family nicotinamide mononucleotide
                     deamidase-related protein"
                     /protein_id="HDK5681555.1"
                     /translation="MKVCIIAVGSELLLGQIVNTNAQFVSQKFNEAGHHVLEHIVVGD
                     NAQRLENVTRRALQQYDVLIFTGGLGPTKDDLTKQTVAEVLNKDLVMNQEAMDYIEDY
                     FKQHGKVMTPNNKQQALVIEGAEVLANQVGMAPGIYVRHDNQHIVMLPGPPKELQPMV
                     ENELIPHFSQGGQTIESEVLRFCGIGESQVETELMDLIDAQSNPTIAPLAGTHEVTIR
                     LTASGESKEVTKQLIAPIKQEILKRIGLYYYGSDDMTPERAVLQLQHQTFTVYDQVTD
                     GLLHARLKQEDSQHLLKGYMLHHPQFLDASVAIEDQLYSAALFVQALYDSEQAISILS
                     QDNTVYIGLLAGDSFQVKTIKMTQMRHLQRDRSQNYILITWLNWLKYPENQSLIDQI"
     gene            17511..18554
                     /gene="recA"
                     /locus_tag="PTC08_000016"
     CDS             17511..18554
                     /gene="recA"
                     /locus_tag="PTC08_000016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499795.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HDK5681556.1"
                     /translation="MDNERQKALDTVIKNMEKSFGKGAVMKLGENKDRRVSSVSSGSV
                     TLDHALGVGGYPKGRIIEVYGPESSGKTTVALHAIAEVQKNGGVAAFIDAEHALDPVY
                     AEALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIIIVDSVAALTPKAEIEGEMGD
                     THVGLQARLMSQALRKLSAAISKSKTTAIFINQIREKVGVMFGNPETTPGGRALKFYS
                     SVRLEVRRAEQLKQGQDIVGNRTKIKVVKNKVAPPFKVAEVDIMYGKGISREGELIDL
                     GVQYDIVDKSGAWYSYNGERMGQGKENVKQFLLENPKLEDEIDRKLREKLGIYDGDVE
                     ESEQEETQTLFDE"
     gene            18781..20340
                     /gene="rny"
                     /locus_tag="PTC08_000017"
     CDS             18781..20340
                     /gene="rny"
                     /locus_tag="PTC08_000017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002459258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease Y"
                     /protein_id="HDK5681557.1"
                     /translation="MNLLSLLLILLGIILGVVVGYFIAQNLIYQKQLQAKQTAKDILE
                     QANKEAENLKKEKLIEAKEENQILRERVENELRERRTELQRQESRLLQKEENLERKSD
                     LLDKKDEILEQKESKLEERQQQVDAKESSVQSIIMKHEQELERISGLTQEEARKEQLS
                     RVEDELSQDIAVLVKEKENEAKEKVNQNAKELLATVVQRFAADHTSESTVSVVNLPND
                     EMKGRIIGREGRNIRTLETLTGIDLIIDDTPEAVILSGFDPIRREIAKTALINLVSDG
                     RIHPGRIEDMVEKSRREVDEIIRDAGEHATFELNVHNMHPDLIKILGRMHYRTSYGQN
                     VLKHSIEVAHLSGMLAAELNEDVTLAKRAGLLHDIGKAIDHEVEGSHVEIGVELAKKY
                     GEPETVINAIHSHHGDVEPTSIISILVAAADALSAARPGARKETLENYIKRLERLEEI
                     SENYEGVEKAFAIQAGREIRVIVEPDTIDDLKSHRLARDIKNQIEGELQYPGHIKVTV
                     VRETRAIEYAK"
     gene            complement(20463..20681)
                     /locus_tag="PTC08_000018"
     CDS             complement(20463..20681)
                     /locus_tag="PTC08_000018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5681558.1"
                     /translation="MSIHIDPEKFAELVVSANPSKKLKPEEIAKESIDLYIHAYRMAE
                     RYTNISSNCYDTASALEALKETELNLYR"
     gene            20879..21259
                     /locus_tag="PTC08_000019"
     CDS             20879..21259
                     /locus_tag="PTC08_000019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDK5681559.1"
                     /translation="MTQKIATCDTFSIDVEAVQQSKEEIAASNIEQVSQMFKSIADIN
                     RSKIVLVLCHHNELCVCDIAEILNVTVANASHHLRSLYKNGIVTFRKSGKRAFYRLYD
                     EHIRQLMMISIEHKKEVDDDDSKS"
     gene            21243..23417
                     /locus_tag="PTC08_000020"
     CDS             21243..23417
                     /locus_tag="PTC08_000020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal translocating P-type ATPase"
                     /protein_id="HDK5681560.1"
                     /translation="MIQSRKTYRIEGLSCANCAGKFERNVRGLASVEEAQVNFGASKI
                     YVTGDPTVEELEGAGAFENLKLTLDERKKISANADRSTMAQPTSWFDKVKQFYKAHQS
                     ICVATLFMLLGYISHLMSGENHLMTILLFACSILLSGSALLIRGVKNLVHVEFDMHTL
                     MTIAVIGGAIIGQWGEVAAVVILFAMSEALETFSMDKARQSMQSLMDIAPDEATVLRD
                     GQHVKVPVDDIVIGEKLYIKPGQKIALDGVVVEGRAAVNQAAITGESMPVEKVGGAEV
                     FAGTLNEDGILEVRVTKTAAHTTLAKMIQLVEEAQLNQTPAQAFIEKFARYYTPAIMV
                     IAILVAIVPPVVLHQSFLTWVYQGLAVLVVGCPCALVIATPISIVSSIGNAAKNGVLI
                     KGGIHLEQISRVRALAFDKTGTLTKGHPEVTTVLPLTEMRDDTELIGQIAAIESRSDH
                     PLARAIVRYAETKHHHFDSYDVTDFHSQTGQGVRANVEGRQFIIGQPQMFKMAQSTMK
                     TQIQQLQEQGNTVIIVSVDDVLRLLIAVRDEVREQSQKAIQTLHELGIQHTVMLTGDN
                     EKTARTIAQTLHMSDVKADLMPVDKLNEIEQLKQQYGTVAMVGDGVNDAPALASASVG
                     IAMGGASTDTALETADIALLSDDMSKLPFTYRLSQKTMRMIKANITFAIAIKLLALLL
                     VIPGWLTLWIAVFSDMGATLIVALNAIRLLYVKADNTEVTTE"
     gene            23748..24542
                     /locus_tag="PTC08_000021"
     CDS             23748..24542
                     /locus_tag="PTC08_000021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00282 family metallophosphoesterase"
                     /protein_id="HDK5681561.1"
                     /translation="MRILFIGDIVGKVGRQTISELLPKLKQHYRPTLTIVNAENAAHG
                     KGLTEKIYKQLLREGVDFMTMGNHTYGQREIYDFIHEATRLVRPANFPDEAPGVGMRI
                     LQLNAKKLAVINLQGRSFMPMIDDPFKKADQLIAEAEKEADYIFVDFHAETTSEKNAM
                     AWYLDGRVSAIVGTHTHIQTSDNRILPQGTAYITDVGMTGYYDGILGINRDEVIKRFI
                     TSLPQRHVVPDEGRSVLSGVIIDLKEDGTAKKIDRILINEDHPFEA"
     gene            24694..26454
                     /locus_tag="PTC08_000022"
     CDS             24694..26454
                     /locus_tag="PTC08_000022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:acceptor oxidoreductase subunit alpha"
                     /protein_id="HDK5681562.1"
                     /translation="MKSQLSWKVGGQQGEGIESTGEIFATAMNRKGYYLYGYRHFSSR
                     IKGGHTNNKIRVSTTPVHAISDDLDILVAFDQETIVLNHHEMREDSVILADSKAKPEK
                     PEDSKAQLIVLPFTEVAKELGTTLMKNMVAIGATAALMHLNTDTFESLITNMFEKKGE
                     KVVDLNIQALNEGYRLMQEQMGEVNGDFELEESSGVPHLYMIGNDAIGLGAISAGSRF
                     MAAYPITPASEVMEYMIDNLPKVGGSVIQTEDEIAAATMAIGANYGGVRAFTASAGPG
                     LSLMMEAIGLSGMTETPFVVINTQRGGPSTGLPTKQEQSDLMQMIYGTHGDIPKIVLA
                     PTDAEDAFYLTVEAFNLAEEYQCPVILLSDLQLSLGKQTVKALDHSKIEIRRGATITE
                     DIERDEDDKDYFKRYAVTESGVSPRPIPGVKGGIHHVTGVEHNEEGKPSEAAENRQNQ
                     MDKRMRKTEKLVIPKPVEGTTTHDDADILYLGFISTKGAIQEGTLRLEQQGYHINHLQ
                     IRQLHPFPTEVIQDAVDKAKKVVVVEHNYQGQLANIIKMNVNLGDKLIKQTKYDGTPF
                     LPHEIEDKGLEILNALKERV"
     gene            26455..27321
                     /locus_tag="PTC08_000023"
     CDS             26455..27321
                     /locus_tag="PTC08_000023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:ferredoxin oxidoreductase subunit
                     beta"
                     /protein_id="HDK5681563.1"
                     /translation="MATFKDFRNNVKPNWCPGCGDFSVQAAIQKAAANVGLEPDEVAL
                     ITGIGCSGRLSGYVNSYGVHSIHGRALPLAQGVKMANRDLTVIASGGDGDGYAIGMGH
                     TIHALRRNMNITYIVMDNQIYGLTKGQTSPSSAPGFVTKTTPKGNIEQNVAPLELALS
                     SGATFVAQGFSSDIKALTKIIEDAINHDGFSFVNVFSPCVTYNKINTYDWFKENLTAI
                     DDIENYDVSNKQAALQTVIEHDSLVKGIVYQDTTTPSYESQIDGLAETPLAHQDLNLT
                     EEQFESFTKQFI"
     gene            27580..27879
                     /locus_tag="PTC08_000024"
     CDS             27580..27879
                     /locus_tag="PTC08_000024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-binding protein"
                     /protein_id="HDK5681564.1"
                     /translation="MIDTLMSIQIIPQTPHGEDVIPFVDEAIKVIDESGLNYRVGPLE
                     TTIEGEMSSLLILIQKMNERMVELESPSIISQVKFYHVTEGISIETLTGKYDEMA"
     gene            27983..29533
                     /gene="miaB"
                     /locus_tag="PTC08_000025"
     CDS             27983..29533
                     /gene="miaB"
                     /locus_tag="PTC08_000025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (N6-isopentenyl
                     adenosine(37)-C2)-methylthiotransferase MiaB"
                     /protein_id="HDK5681565.1"
                     /translation="MNEEQRKAGTIDVLAQRDSKEEKDYSKYFNFEHVYQPPSLKDAK
                     KRGKETVQYNRDFQIDEKFRGMGKGRTFLIKTYGCQMNAHDTEVMAGILTALGYTPTE
                     DVNTADVILLNTCAIRENAENKVFGEIGNLKHIKQERPDCLIGVCGCMSQEESVVNKI
                     LKSYQNVDMIFGTHNIHRLPQILEEAYLSKAMVVEVWSKEGDVIENLPKVRQGRIKAW
                     VNIMYGCDKFCTYCIVPFTRGKERSRRPEDIIEEVRDLARQGYQEITLLGQNVNAYGK
                     DIEDLEYGLGDLLADISKIDIPRVRFTTSHPWDFTDRMIEVIAEGGNIVPHIHLPVQS
                     GNDQVLKIMGRKYTRENYLDLVARIKAAMPDVALTTDIIVGYPNETEAQFEETLSLYE
                     AVGFEHAYTYLYSQRDGTPAAKMKDNVPTDVKKERLQRLNRLVGEYSSRALKAYEGET
                     VRVLCEGASKKDEAVLAGYTEKNKLVNFRAPKSVIGKIVDVKIVEAKQYSLNGEFVGV
                     SETTMVTV"
     gene            29534..29911
                     /locus_tag="PTC08_000026"
     CDS             29534..29911
                     /locus_tag="PTC08_000026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RicAFT regulatory complex protein RicA family
                     protein"
                     /protein_id="HDK5681566.1"
                     /translation="MYSREMILESAQKLSASIQSLETIQHYQRIETQIHQNEQIAQYM
                     AELKQNQKQSVNLQNYDKPVAFARSEEKIEEIQTKIDGIPIVNEFKKAQHEANELLHV
                     VIGTLSARIQQENIEAEDDQTHE"
     gene            29966..30475
                     /gene="thiW"
                     /locus_tag="PTC08_000027"
     CDS             29966..30475
                     /gene="thiW"
                     /locus_tag="PTC08_000027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy coupling factor transporter S component
                     ThiW"
                     /protein_id="HDK5681567.1"
                     /translation="MNTRKLTLTALFIAVNVVLSTVIVIPLGAIKAAPVQHFVNVLSV
                     VILGPWYGLAQAFLSSCIRVMFGTGTPFAFPGSMIGVLLGSLFYYVNRHLFVAAIGEV
                     IGTGIIGSLVCIPLAWILNVDHFLIKPLMAAFIVSSMIGASISYALLILLKRRGVLKH
                     LDLNRKYRK"
     gene            31338..33935
                     /gene="mutS"
                     /locus_tag="PTC08_000028"
     CDS             31338..33935
                     /gene="mutS"
                     /locus_tag="PTC08_000028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000073352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair protein MutS"
                     /protein_id="HDK5681568.1"
                     /translation="MSNVTPMMKQYLSIKAQHQDALLFFRLGDFYEMFYDDAITASRV
                     LEITLTKRDAKKDNPIPMAGVPYHSADSYIETLIQNGYKVAICEQMEDPRQVKGMVKR
                     EVVRIITPGTVMEKGGVDDTQNNYILSFVKADGYALSYCDVSTGELKVTHFEDESTLI
                     NEITTIRPNEIVVTEPLSETLQRQLNMITETITVVEQVSDQNYSVNSLSHPLMHQAIQ
                     IVLDYIYDTQKRDMSHIEAAVEYKALDYMKMDYYAKRNLELTESIRLKSKKGTLLWLM
                     DKTKTPMGARRLKQWVDRPLIQQAEIAKRHDAVDQFLHYFIERDTLRDYLTEVYDIER
                     LVGRVSFGNVNAKDLVQLKHSIAQIPAIKALLQSIEHEAIAHFNALEPLDDLLQVLSD
                     SLVDEPPLSVKEGGLFKAGFNEELDQYLDASKNGKQWLAQLQAQERERTGIKSLKISF
                     NKVFGYYIEITRANLSQFDPSAFGYERKQTLSNAERFITDELKEKEAIILGAQDKSIE
                     LEYQLFVALREQVKTYIERLQQQAKIISEIDCLQSFAEIAQQYNYVRPQFSEDKTLKL
                     VDSRHPVVERVMDYNDYVPNDCLLNTEQFIYLITGPNMSGKSTYMRQVAIISIMAQMG
                     AFVPCQSATLPIFDQIFTRIGAADDLVSGKSTFMVEMLEAQKALKYATADSLIIFDEI
                     GRGTSTYDGLALAQAMIEYVAETSQAKTLFSTHYHELTELEQHLPSLKNVHVAADEYQ
                     GELIFLHKVKDGAVANSYGIQVAQLADLPEQVIARAQVILDTFEAHEKAQVTYTSTVD
                     QKSVSPTSVKASTVAEEPPQFEQPTFDLFMSEAEVSEIEFEIKQLNLSQMTPIEALVK
                     LSELQNRLQ"
     gene            33950..35890
                     /gene="mutL"
                     /locus_tag="PTC08_000029"
     CDS             33950..35890
                     /gene="mutL"
                     /locus_tag="PTC08_000029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair endonuclease MutL"
                     /protein_id="HDK5681569.1"
                     /translation="MGKIKTLHTSLANKIAAGEVVERPSSVVKELLENSIDAGATEIN
                     IEVIESGIASIRVVDNGSGILQDDLGLVFHRHATSKLVEDDDLFHIRTLGFRGEALAS
                     IASVAKVTLQTSTDGVAGYEVYAEEGEIISEKPAKARKGTDIRVDALFYNTPARLKYI
                     KSLYTELGKITDIVNRMAMSHPDIRIALSNDGKKILQTNGSGRTNEVMAEIYGMKVAR
                     DLIRIEGDTSDYHLTGYVAKPEHSRSNRHYISLFINGRYIKNFLLNKAVQEGYHTLMM
                     IGRYPIVYLNIEMDPVLVDVNVHPTKLEVRLSKEDQLFDLIVAKIREAFKDQLLIPKN
                     DLKSKYEPKKVLEQFEQQKMAFDQIQAAQTQTSHSNKEMTIDEEPAPYTDVTEPSDTA
                     KTPTTSETNDDYAERQRALLNDMVEAPSPINEVNSTDDSSDGATVSEIQQNHPQPSDK
                     PKRRVPYMEVVGQVHGTYIIAQNDEGMYLIDQHAAQERIKYEYYRDKIGEVNNENQSL
                     LIPLTFNFTKDEQLIIEQHLDPLREAGIFLEPFGGHDYIVDSYPVWFPQENVEEMIKD
                     MIEYVIRHKKVDIAKFREEAAIMMSCKRSIKANHYLKPNEMADLIDQLGEMQDPFTCP
                     HGRPVIINFSNYELERLFKRIQ"
     gene            35902..36435
                     /locus_tag="PTC08_000030"
     CDS             35902..36435
                     /locus_tag="PTC08_000030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000394287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate responsive antiterminator"
                     /protein_id="HDK5681570.1"
                     /translation="MKPHILPAIRSTKDLEKLLKTDYETCVLLDTHIGHLNGIMKLIS
                     QYELKPFMHIDLIKGMSHDEYACEYIIQTYRPRGIVSTKTKVIKKAKALGVVTIFRVF
                     IIDSHALERSIELIQRIEPDYVEVLPGIADKVIQEIHQKTGTPVIAGGLINTPEEVEH
                     AVSSGAAYITTSDKSLW"
     gene            36463..37491
                     /locus_tag="PTC08_000031"
     CDS             36463..37491
                     /locus_tag="PTC08_000031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LD-carboxypeptidase"
                     /protein_id="HDK5681571.1"
                     /translation="MIKPQKLKKGDTIAIVSPSSGLAGEPQVRWRTEQGIENIQTLGY
                     HVKVMDNSLNGIAWNFEHPKERAEILTAAFVDSEVQAILCTIGGYESVRIIPFLDDEV
                     IRQHPKIFIGYSDITPLHLHMYKLGITSFYGPALLTDFAENVELDAYTVDHLFSAIGD
                     TQPIGNIPTSDEVRVFGLRWEEDKRHIAREKMPNGDYIHISGHGTVQGQLIGGCFESL
                     DKLRGTPYFPELEQFKGKILFLETSEVQVDPMSFEETLRAFGLMGIYDVVSGIVLGRP
                     QNGVHQEAYHDKLRLIMKEFHQETLPIIGNASFGHNEPKCTLPYGVQATLSADTLSLS
                     IDEAAVVN"
     gene            37730..38545
                     /locus_tag="PTC08_000032"
     CDS             37730..38545
                     /locus_tag="PTC08_000032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016424956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aquaporin family protein"
                     /protein_id="HDK5681572.1"
                     /translation="MNVYLAEFIGTALLLLMGGGVVANVALKKTNGNGADWIVITVGW
                     GLGVTLGVYAVGQISGAHLNPAVTLALAMNGDFAWAQVPGYIIAQLIGGVFGGMLTWL
                     MYLPHWRATEDKATKLGVFATGPALKNYTANFISEIIGTAVLTSGLLYIGANKFTDGL
                     NPLIVGALIVAIGLSLGGTTGYAINPARDLGPRIAHAILPITGKGGSGWGYAIVPILG
                     PMVGGMLGAVLYRLAFKGIFDVWTIVTLIALVLTLLLGVAMNKKAPKDEIAKI"
     gene            38841..40343
                     /gene="glpK"
                     /locus_tag="PTC08_000033"
     CDS             38841..40343
                     /gene="glpK"
                     /locus_tag="PTC08_000033"
                     /EC_number="2.7.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol kinase GlpK"
                     /protein_id="HDK5681573.1"
                     /translation="MGNYILSIDQGTTSSRAILFNEEGEIVGVAQREFKQHFPKSGWV
                     EHDANEIWSSVLSVMASVLTENNVSANEVKGIGITNQRETTVVWDKETGRPIYNAIVW
                     QSRQTQSICDALKQEGHEQTFRDKTGLLLDPYFSGTKVKWILDKVDGAREKAAKGEIL
                     FGTIDTWLVWKLSGGRAHVTDYSNASRTLMYNIHELKWDDELLELLDVPKAMLPEVKP
                     SSEVYCETIDYHFFGQNVPIAGIAGDQQAALFGQACFERGDVKNTYGTGGFMLMNTGE
                     EAVKSGNGLLTTIAYGIDGKVNYALEGSIFVSGSAIQWLRDGLRMINSAPQSEDYAIR
                     VDSTEGVYVVPAFVGLGTPYWDSDARGAIFGLTRGTEKEHFIRATLESLCYQTRDVIE
                     AMAQDSGIEVNSLRVDGGAVKNNFLMQFQSDLLNIEVERPEINETTALGAAYLAGIAT
                     GFWKDKSEIQRRWKLEKSFEPEMDQKESNRLYKGWKKAVEATQVFKLDEE"
     gene            40470..42140
                     /locus_tag="PTC08_000034"
     CDS             40470..42140
                     /locus_tag="PTC08_000034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate dehydrogenase/oxidase"
                     /protein_id="HDK5681574.1"
                     /translation="MRLSTLKRDTVKKRMQNEAYDLIVVGGGITGAGIALDATARGMK
                     VALVEMQDFAQGTSSRSTKLVHGGLRYLKQLQVGVVAETGKERAIVYENGPHVTTPEW
                     MLLPMHKGGTFGKFSTSIGLAMYDRLAGVKKSERKKMLSKKETSAKEPLVKQDGLKGG
                     GYYVEYRTDDARLTIEVMKKAAEQGADIMNYAKVTNFLYDNKEKVNGVAVVDRLGNET
                     FEIKGKKVVNATGPWVDEVRSADYSKNNKQLRLTKGVHVVIDQSKFPLRQAVYFDTEK
                     DGRMIFAIPREGKAYVGTTDTFYNNDKSKPLVNQEDRDYLVDAINYMFPTVHITDADI
                     ESTWAGVRPLIFEEGKDPSEISRKDEIWEGKSGLLTIAGGKLTGYRHMALEIVDLVEK
                     RLKQEYKLKFKEVDTKHIPISGGDVGGSANFEQFIEDKVAAAKAMNLDTDLARRLATK
                     YGSNVDDLFAIAQAAQHQNTGLPLELYVELVYGVQNELVVKPTDFLVRRIGALYFDID
                     TVLRHKDTVVDVLADLLGYDANVKAVYKQELEEAIQEARHGQHQPAEK"
     gene            complement(42433..42639)
                     /gene="hfq"
                     /locus_tag="PTC08_000035"
     CDS             complement(42433..42639)
                     /gene="hfq"
                     /locus_tag="PTC08_000035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA chaperone Hfq"
                     /protein_id="HDK5681575.1"
                     /translation="MIEKRNIQDEYLEKFKNEGKELTVFLTNGFQLRGTIVDFDQYVI
                     DILSQGRHHLIYKHAISTFLEGTN"
     gene            complement(42632..43588)
                     /gene="miaA"
                     /locus_tag="PTC08_000036"
     CDS             complement(42632..43588)
                     /gene="miaA"
                     /locus_tag="PTC08_000036"
                     /EC_number="2.5.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HDK5681576.1"
                     /translation="MSQNKPFIVAIVGPTASGKTELGVALAKAIDGEVISGDSMQVYQ
                     GMDIGTAKVTPDEMDGIPHHLIDILKPDETYSAYDFQQQAQQLITDITTRGKVPIIVG
                     GTGLYIQSVIYDYQFDGETISPETEQRVAEQMAKLKSYTNEAIHDYLGTFDPISQREI
                     HPNNRKRVERAISYYLSTKKVLSNRKKSTQLTENYDTLLVGIKMSRDTLYSRINSRVD
                     MMLSHGLLDEVQELIELGYESCQSMQAIGYKEIIPVIKNEMPLDEAITLLKQHSRNYA
                     KRQMTWFTNKLNVHWLYREKMSLTSMLSELKPLINKRRNEHD"
     gene            complement(43575..44528)
                     /locus_tag="PTC08_000037"
     CDS             complement(43575..44528)
                     /locus_tag="PTC08_000037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipase"
                     /protein_id="HDK5681577.1"
                     /translation="MVKSEAMKIAVTDGTMIEAKVDRTDYEAVGIVHIFHGMAEHMDR
                     YVTLVDKLNQQGYHVIRHNHRGHGCDVDGIRGHFDSMTQVVQDAFEIQSTLKAQFNPH
                     LPLILIGHSMGSIIARQFVQTYPQAAQGLILSGTGYFPTWYYITNLPLLKIITLVCGK
                     KRRMNWLNQMTTGRFNKNFKPTRTTSDWLSSDKSEVDHFIQDPHTGFLVSNQLIFSVL
                     QTMMRTSRVKNIADMNLELPILLISGKDDPFGANGKGIRRFGKILKRGGIHHITVQLY
                     KNKRHEVLFEKDKETVWRHMLDWMSRQIIKKQKVGERGVTK"
     gene            complement(45279..45752)
                     /locus_tag="PTC08_000038"
     CDS             complement(45279..45752)
                     /locus_tag="PTC08_000038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione peroxidase"
                     /protein_id="HDK5681578.1"
                     /translation="MHLYDIEVPKIDGSTYPLSQYKGDVLLIVNTASECGLTPQFEGL
                     QKLYDTYRDKGFTILGFPSNQFGKQEPGSGKEAATNCQLNYGVTFPMHEKIEVNGDNA
                     HPLYNYLKSQKSGIFGDKIKWNFTKFLVDRDGQVVKRFSPQKTPEHLKQDIEHLL"
     gene            45858..47090
                     /gene="hflX"
                     /locus_tag="PTC08_000039"
     CDS             45858..47090
                     /gene="hflX"
                     /locus_tag="PTC08_000039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase HflX"
                     /protein_id="HDK5681579.1"
                     /translation="MRKTELHSTEKIKETAVLIGVDLYQSHYDFESTMNELNALAYTC
                     NLDVQGQWIQQKNQVDHKYYVGSGKLAEIQDFIEFHDIDVIVANDELTTAQSKNLNAR
                     LGVKIIDRTQLILEIFALRAKSKEGKLQVEYAQLDYLLPRLTGHGKSLSRLGGGIGTR
                     GPGETKLETDRRHIRTRMNEIKRKLAEVEAHRERYRNQREQNRVFQVALIGYTNAGKS
                     SWFNTLTAADTYEQDLLFATLDPKSRQLKINDGFEMVISDTVGFIQKLPTTLIEAFKS
                     TLEEARQADLLIHVVDASHAEYKIQYDTVNEIVQELDMQDIPQVVIFNKKDLFTGTTT
                     PVTQYPSVFVSSKNEADIEKVKNLLFQAIQKQFDFYTAQLPSSAADQLYHLKQHTLVT
                     KLDYDEATDQYHIEGYQK"
     gene            47108..48355
                     /locus_tag="PTC08_000040"
     CDS             47108..48355
                     /locus_tag="PTC08_000040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine gamma-lyase family protein"
                     /protein_id="HDK5681580.1"
                     /translation="MTQLTKLIEEVETTLAPYFKDIETRAFENQARVLDAFHKVKITE
                     ADLVGSTGYGYDDYGRDHLEAVYAETFKAEDALVRPQLISGTHAITVALQSTLKPGDS
                     LMYITGSPYDTLLEVIGINGNGVESLKEYDIHYQEVSLKAGHIDVERVLETIDDTTKV
                     IAIQRSKGYDQRPSINVDEIGDAIRQIKAQYPEMIVFVDNCYGEFVETKEPIEVGADL
                     MAGSLIKNPGGGLAKIGGYIVGRRDLVERCGYRLTAPGIGKEAGASLYALQEMYQGFF
                     LSPHVVSQSLKGALFTSLLLERLNMRTSPRYDVKRTDLIQTVSFDTKEQMIQFCQSIQ
                     HASPINAHFSPEPSYMPGYEDDVIMAAGTFIQGSSIELSADGPIRPPYEAYVQGGLTY
                     EHVKIAVTRAVEKLIKVGLIKLK"
     gene            48531..48899
                     /locus_tag="PTC08_000041"
     CDS             48531..48899
                     /locus_tag="PTC08_000041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016424965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HDK5681581.1"
                     /translation="MDNDTIRRNMPVFPMSVVSRLTELSARQIRYYETHELVIPSRTE
                     GNKRLFSLNDLETLLSIKHLLEKGFNMKAIKEIMLEDSQKTLNDEEERLRKQILVDTT
                     QKPQRDSIPLNRGDLSRFFK"
     gene            48923..50263
                     /gene="glnA"
                     /locus_tag="PTC08_000042"
     CDS             48923..50263
                     /gene="glnA"
                     /locus_tag="PTC08_000042"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glutamate--ammonia ligase"
                     /protein_id="HDK5681582.1"
                     /translation="MPKQHFTKDDIRRFAKEENVRYLRLQFTDILGTIKNVEVPVSQL
                     EKVLDNEMMFDGSSIEGFVRIEESDMYLYPDLDTWVIFPWTAGQGKVARLICDVYTTD
                     HQPFSGDPRSNLKRVLKEMESLGYTDFNLGPEPEFFLFKLDEKGEPTMELNDHGGYFD
                     LAPTDLGENCRRDIVLELEDMGFDIEASHHEVAPGQHEIDFKYADAITACDNIQTFKL
                     VVKTIARKHNLHATFMPKPLFGVNGSGMHFNVSLFKGKENAFYDEKGDMQLTEDACHF
                     IAGIMKHARGYTAVCNPLVNSYKRLVPGYEAPSYIAWSGKNRSPLVRVPSSRGLSTRV
                     EIRSVDPAANPYMALATILQAGLDGIKNKLEVPEPVNQNIYEMNREEREAVGIEDLPS
                     TLYTALKAMRENPIVKDALGEHIYNQFINSKSIEWDYYRTQVSEWEVEQYMKQY"
     gene            complement(50357..51288)
                     /locus_tag="PTC08_000043"
                     /pseudo
     CDS             complement(50357..51288)
                     /locus_tag="PTC08_000043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002493725.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
BASE COUNT        16980 a         8796 c        10948 g        14790 t
ORIGIN      
        1 catcataaaa agacaaaaaa acaacccccg ttaccgcaat taacgagggt accctaataa
       61 taggctgtaa tagtaaaaca tatgttgagc tcgaactcac ttatatgttg ctatgttttt
      121 agctcctaat ctactctcat aaagacggtt aggagttttt tcttttttta atcatagcat
      181 gtgcttgaca taaatacaag caccacgcag gtagaattac aattgacaac aatcaaaaat
      241 aatttcaacc acgtcttttg aaaataaatg aaaaccaatc atcttttcta ctctgtttca
      301 ttgacgcctc ttcctactct cctttataat gatttattga ggataacgct acgatatttt
      361 atcgaaagga ggcacttttt atgaatatgc gtgcagaacg tgttggcgaa caaatgaaaa
      421 aagaattaat ggatattatt aataacaaat taaaagatcc aagagtcggt tttctaacga
      481 ttacagatgt acagccaaca aacgatttat cattagcaaa ggtttattta acagtacttg
      541 gtagtgataa agaacgcgaa aatacattca aaggtcttga aaaggcaaaa ggattcatta
      601 aatcagaaat tggtcagcgt atgcgactta gaattgtccc tgatttgcaa tttgaatatg
      661 atgaatcgat tgaatatggc aaccgtattg aacgattgat tcaagattta aatcataatg
      721 actaacaatg tgcgctagag tgcgtgagat gatctgcaat tgtggagtcc acgtagtcta
      781 gcttatttta tgaaaaggag tgttggtgga tgtatcatgg tattttaccg gtctataaag
      841 aacgagggtt gacaagtcac gatgtcgttt ttaaattgcg caaaatttta aagacgaaaa
      901 aagtcggcca taccgggaca ttagatcctg aagtagatgg cgtccttcct atttgtatcg
      961 gtcaagcgac aaaagtgagc gattatgtga tggaaatggg aaaaacgtat cgcgctgaag
     1021 tgacattagg tttttcaacg acgacagagg atcaaacggg tgacgtcttg gcacgtgaaa
     1081 tcgttacggt tgaccaattc gatgccaatc aagttgatgc agtgttacac tcatttaaag
     1141 ggtggacgac acaaattcca ccaatgtatt cgtctgtgaa agtaaatggc aaaaaattgt
     1201 atgaatacgc acgcaatggt gaaacggtag agcgccctaa acgtcaaatt catatttcgc
     1261 atattgcacg gatttcggac ttaatttttg aaaatgacat cgtacgtttt tcaatagaag
     1321 tgacttgtgg caaagggaca tatattcgaa cactcgcaac ggatattggt cgagcactcc
     1381 atgtaccagc gcatatgtca ttgttgacac ggacgatgag tggtggcttc agtttagacc
     1441 aagcactcac tttagcattg attgaacagt cgcatcatga cgacacactc caaaatcaat
     1501 tattaccact tgcatacggc ttgaaaggac ttccatcttt ccatgttcaa aatgaaagtg
     1561 ataaaatgaa gataaagaat ggacaaaagt ttgctaaagg ttattttaat gtgccatttg
     1621 agcagcaact tgtcatggtt gatagtgaca atgatgatgt attagcaatt tatgaagtgc
     1681 atccatcacg acaagatgaa attaaaccga aaaaggtatt taattaaaag gagacttggt
     1741 tatggaagtt attgagatta cacatcctat tcaagctgaa caatatattc aagaggatgt
     1801 agcaatggcg cttggctttt tcgatgggct acacagaggg catcaagcat tatttgatga
     1861 attagatcgt gtggcaaagg aaaaggatct gaagaaagcg gtcatgactt ttgatccaca
     1921 tccgtcagtc gttttaaatc ctaaacaaaa acgcacgact tatattacgc cgttagatga
     1981 taaaattgaa ttattaggcg aacaaaatat tgattattgt cttgttgtga atttttcttc
     2041 acgatttgcg gaagtgacac ctgatgaatt tgttcaagac tatttagtga aaaatcatgc
     2101 tcgtgttatt attgctggat ttgattttac atttggtaag tatggtaaag ggaatatggc
     2161 gatgcttcaa gaatatcaag cgcaatttga aagtattaca attggtaagc aagatttgaa
     2221 ccgtgaaaaa atttcaacga cagcgattcg tgaagcattg aaaacgggtc atcttgcgaa
     2281 ggcgaatgag caattaggtt accgttatcg aatgaaagga accgtcgtgc aaggtgaaaa
     2341 gcgcggccgt acgattggtt tcccaacagc gaatattgaa ccaagtgatg actatgtttg
     2401 gccaacgctc ggtgtttatg cggtcagtat gacgattggt tcaagtgatc aaatttaccg
     2461 tggtgttgct aacattggtg tgaagccgac gttccacgat gatttacctc aagctgtcat
     2521 tgaagtgaat atttttgatt ttacggaaaa catttatggc gaacgtgtta cgatttattg
     2581 gcaccactac atccgaccag agttgaaatt cgatgggatt gacccactcg ttgcgcaaat
     2641 gaacgatgac aaagcacgtg ccaaacattt attagcggtt gattttggtg acgatgtatc
     2701 atataatgta taagtctaat aaagattagc acacgacctt tatcttggta ggttgaaact
     2761 ccgacgcctg actcagataa aggcacgaaa aatttaaagg aggaaattga caaatggcaa
     2821 tttcacaaga acgtaaaaac gaattaatca aagaataccg tacacacgaa acagacactg
     2881 gttcaccaga agttcaaatc gctgtgttaa ctgcagaaat cactgcatta aacgatcact
     2941 tacgtattca caaaaaagac caccattcac gtcgtggttt attaaaaatg gtaggacgtc
     3001 gtcgtcactt attaaactac ttacgtgaca aagacatcca acgttaccgt gaattaatca
     3061 agtcattagg tatccgtcgt taattttaat cattgcgcac gtgctagtgg cattacagga
     3121 aggagctggg acatttatcg tatccggctc cttttttaac tattaaaaga tgtttatgta
     3181 agatataatt gaaatgtaaa aggctacgaa atgtttaaag aggtaggaga ggagatttat
     3241 aatgtctcaa gaaaagaagg tttttaagac ggaatgggca aaccagccgt taacaataga
     3301 aacaggacaa ctcgcaaaac aagcgaatgg tgctgtactc gtacgctacg gggacacagt
     3361 tgttttgtct acagcgacag catcaaaaga accacgcgat ggcgactttt tcccattaac
     3421 tgtcaattat gaggaaaaaa tgtatgccgc gggtaaaatt ccaggtggct tcaaaaagcg
     3481 tgaaggacgt ccaggtgacg aagcgacatt gactgcacgt ttaatcgacc gtcctatccg
     3541 tccattattc ccagatggct atcgtcatga tgtccaaatc attaatactg tattgagtgc
     3601 ggatcctaac tgttcacctg aaatggcagc gatgatcgga tcgtcaatgg cgttaagtgt
     3661 atcagatatt ccattccaag gcccaattgc gggtgtgaat gtaggctatg ttgatggcga
     3721 atatgtcatt aacccgaatt tagaacaacg cgaaaagtca cgtcttgatc tagaagtagc
     3781 cggtcataaa gacgcggtga acatggttga agcgggtgcg agtgaaatta ctgaagcaga
     3841 aatgttagaa gcaattttat ttggccatga agaaatcaaa cgtttatgtg cattccaaga
     3901 agaaattatt gcgcatttac aacctgaaaa acgtgaattt attcctgaag agaaaaatca
     3961 aacgctcatc gattcagtga cgcaaatgac aaaagatgag aatttaaatg gtgcgattca
     4021 aacgttcgac aaacaagagc gtgacgcgaa tcttgatgca attaaagaac gtattttagc
     4081 gaactttgaa aacgaagaag atcctgaaaa tgaagcatta ttaaaagaag ttggcacaat
     4141 tattaatact ttaattaaag atgaagtacg ccgtttaatt gcagatgaaa aaattcgtcc
     4201 agacggtcgt aaacctgacg aaatccgtcc attatcatca gaagtgggct tattaccacg
     4261 tgcacatggt tcaggattat ttacacgtgg acaaacacaa gcattgtcag tgttaacgtt
     4321 aggctctatt tctgaatatc aaattatcga tggtttaggt gaagaagagc acaaacgttt
     4381 tatgcaccac tacaacttcc cgaacttctc ggtaggtgag acaggtccag tacgtgcacc
     4441 agggcgtcgt gaaattggtc atggtgcgtt aggtgaacgt gcattaagat atattattcc
     4501 agatgagaag acgttccctt atacagtgcg tatcgtaagt gaagtgttag agtctaacgg
     4561 ttcttcatca caagcgtcta tctgtggttc aactttagcg ttaatggacg cgggtgtgcc
     4621 gattaaagca ccagttgcag ggattgcgat gggtcttgtt acgcgcgaag aaagctacac
     4681 gattttaacg gatattcaag gtatggaaga cgcactgggt gatatggact tcaaagttgc
     4741 aggtacgact gaagggatta ctgcgattca aatggacatt aaaatcgacg gcttaacgaa
     4801 agaggtcatt gaagaagcgt tagaacaagc gcgtaaaggt cgtttagcca ttttagagca
     4861 tatgatgcaa acgattgacc aaccaagaaa agaattaagt gcttatgcgc ctaaagtaga
     4921 aatcatgcaa attaaacctg aaaaaatccg tgatgtcatc ggaccaggtg gtaaacaaat
     4981 caacgaaatt attgatgcga cgggtgttaa acttgatatc gaacaagatg gtacagtttt
     5041 catcggttca actgagcaag acatgatcaa tcaagcacgt gcatggattg aaagtatcgt
     5101 tcgtgaagca gaagtcggtc aagtgtatga tgcgaaagta aagcgcattg aaaaattcgg
     5161 tgcgtttgtg gaactgttcc caggtaaaga tgcattagtt catatttcac aaatttcgaa
     5221 cgaacgcatt aacaaagtgg aagatgtatt gaacatgggt gatacactga aagtgaaagt
     5281 gactgagatt gacaaacaag gtcgtgtgaa cgcttctcat aaagtgttgc tttaaaatta
     5341 acaaagcatg acatttaaat agatgaactt aaaaaacaga agtagatgtg acatatgagc
     5401 attgacttct gtttttttgc atagtgagag acaattctaa ggagtgcggt atatttgagg
     5461 aaaataaaca ttttgtcagg tataatcatt cttgtactat tactcggtgg gattttgctg
     5521 gattttttac accactctga actgattgtg gtgatgtata acctgattgc ctttgtcatt
     5581 atgatgttac tttttttaaa tgcatctcgg aattgaggat tgtttagaaa tagttaccaa
     5641 tgcttaaggc taaatataat acgttgatac atatttttta atgtaggagg atcatttgta
     5701 aagcaacatc aatcatttat tgtgtataca aaatcctcaa cctgtcgtcc gagaaacact
     5761 ttaatagtgt acagagtttc cattatccac tataataaaa tatgaatgta aaatggacgg
     5821 gctatattta ttaggaggta aaattttgaa tttagtaaag aagaaaaata aagacatacg
     5881 cattatcccc ctcggtggcg taggagaaat cgccaaaaac atgtatatcg tcgaagtaga
     5941 tgatgaaatg tttatgcttg atgcagggtt aaagttccct gaagatgaaa tgttagggat
     6001 tgatatcgtt attcctgaca tccaatacgt attagaaaac aaacataaat taaaagggat
     6061 tttcttaaca cacggtcatg aacatgcgat tggtgcagtt tcatacattt tagaacaagt
     6121 tgaagcgccg gtttatggtt ctaaattaac gattggttta gtgaaagaaa acttaaaagc
     6181 acgtcaaatt aataagaaaa tccgttatta tgtggtcaat aacgaatctg tcatgcgttt
     6241 taaaggtgtg aatattacat tctttaatac gacgcacagt attccggata gtttaggtgt
     6301 atgtattcat acgtcatacg gtgccatcgt ttatacaggt gagtttaaat tcgaccaaag
     6361 tttacacggt cattatgcac ctgacatgaa gaaaatggct gaattaggcg aggaaggtgt
     6421 gttcgcatta ttaagtgatt ccactgaagc tgaaaaacca ggctacaaca cacctgaaaa
     6481 cgtcattgaa agtcatatgt ttgatgcgtt tgcgaaggtg actggacgtc ttatcgtgtc
     6541 atgttatgca tcgaacttta ttcgcattca acaagtgtta aatatcgcta atagactaaa
     6601 tagaaaagta tcatttttag gccgttcatt agaaagttca tttagtattg cacgtaagat
     6661 gggctatttc aacattccaa aagatctatt aattcctatg agcgaagttg aaaattatcc
     6721 gaaaaatgaa gtgattatca ttgcgacagg gatgcaaggt gaacctgttg aagcgttaag
     6781 ccaaatggca cgtcaaaaac ataaaattat gaacatccaa aaaggggatt ctgtatttct
     6841 tgcgattacc gcttcagcca atatggaggt cattattggt aatactttga atgaacttgt
     6901 acgtgcgggt gcccatatta taccaaacaa caaaaaaatt catgcatcaa gtcacggttg
     6961 tatggaagag ttgaaattaa tgctcaatat gatgaaacct gaatacttca ttccaattca
     7021 aggtgagttt aagatgcaaa tcgcgcatgc aaaacttgcg agtgaagcag gtgtaaatcc
     7081 tgaaaaaatc ttcttagctg aagcaggcga cgttattcat tacgatggtg aagatatgag
     7141 cttgaatgaa aaagtgaatg cagggaatgt gctgatcgat ggtattggtg tcggtgatgt
     7201 cggtaatatt gtattacgtg atcgtcattt acttgcagaa gatggtattt ttatcgctgt
     7261 cgttacgctt gatccaaaga acagaagaat tgcggcgggt cctgaaattc aatcaagagg
     7321 ctttgtttac gtacgtgaaa gtgaagcgtt attgaaagaa gctgaggaga aagtccgtga
     7381 aattgtagaa gctggtttac aagaaaagcg tattgaatgg tctgaaatga aacaaaatat
     7441 gcgtgatcaa gtgagtaaat tactctttga aagtacacgt agacgaccaa tgattattcc
     7501 agtgatttca gaaatatagt tttaaaatca gtgtgaagtt caaacaagaa aacgaatctt
     7561 actctttgaa agccacgcca tttttaaaga ggagattcgc ttttttcatc atacaggttg
     7621 atgacatcat tttttagaaa gtagaaggtg acgaagcatg gcgcaaacca agaaacggaa
     7681 atcccaaacg acgcgcaata gaaagcgtac ttcgaaaaag aaacaaaatg atacgcctat
     7741 gcgatttaca ctcgttattg tgatggcgat tgtcatcatg ttaggcgtgt ttcaactcgg
     7801 actcgttgga attgccattg atagcttttt taattactta tttggtttaa cacgttatct
     7861 tacatacttt ttactcttaa tagcgcttgg ttttatcgca tataacggta aattacctaa
     7921 aacgcgtcga ttgactggtt cgattgtctt acaaattgcg ctgttatttg ttgcgcaatt
     7981 atacttcatg gcaactggcg gtatgagagc gaaacgtgag cctgtgttat cttatgtgtt
     8041 ccaaagttat gatgcggctg agcatatgca atttggcggc gggttattcg gtttttattt
     8101 gatgcatgtg gtgttgccac tcatttcgct tgctggtgtc gttttactta cacttgtgtt
     8161 actcgtttca agtggcattt tattactgaa aaagcgccat cgtgatgtgg caaaagtgtg
     8221 gttggaacaa tttaaacaat caacagcctc gtcatatgaa aaggtgaagg cacatcaatc
     8281 tgaacgacgt gtgacaagaa aagaaaaaaa agaacagaag cgactcgagc gcgaacaaca
     8341 acgtgcagca gagccgaaag atgtgtcgga ttttcctgaa gtcgacattc cagaagagga
     8401 accgactgat tatccttcga ttcctatttt cggtcatcat tctgtagaag tggatgcacc
     8461 aagtcagcca gtgcaaaatg agatgacacc accgacgcaa cccgatatac caaagcgtca
     8521 taaagctgag acagaaacac acagtgaagt agagagaagc ggctcagaag gtagtattac
     8581 tgaagcgggt gcagcagaaa atctacaata cgaaatccca ccactgtcgc tactaaaaga
     8641 accgaaacgt caacaaacga cttctaaaac tgaagttcaa cgtaaaggaa agttactcga
     8701 aacgacatta aaaaactttg gtgtcgatgc gaaagtgacg caaattaaaa ttggaccggc
     8761 agtgacgcaa tatgaagttc aaccggcaca aggtgttaaa gtaagtcgta tcgtcaattt
     8821 acataacgat attgcactcg cacttgccgc taaagatatt cgaattgaag cgcctattcc
     8881 aggtaaatcg gctgtaggga ttgaagtgcc taatcaaaaa gtagcgattg ttacgttaaa
     8941 agaagtattg gatgaaaaat tcccagctaa aaataaatta gaagtggcat taggtcgaga
     9001 tatttcaggt gaaccgatta cagcagaact gaataaaatg ccgcacttat tagtcgcagg
     9061 ttcgacgggg agtggtaaat cagtttgtat taacggtatc attacgagta ttttgttgaa
     9121 tgccaagcca catgaagtca agctcatgat gattgaccct aaaatggtag aattaaatgt
     9181 gtacaacggt attccgcact tattaacacc agttgtcaca aatccacata aagctgcaca
     9241 agcacttgaa agagttgtgg cagaaatgga aagacgctat gatttattcc aacattctgg
     9301 tacgcgaaat atcgaagggt ataatgactt tattacgcga aaaaataaag agcttgaaga
     9361 aaaagaggcg ttattaccgt atattgtcgt cattgtcgat gagttagctg acttaatgat
     9421 ggtagcaggt aaagatgttg aaactgccat tacacgtatt acacaaatgg cacgtgctgc
     9481 agggattcat ttgattatcg caacacaacg tccgtcagtc gatgtcatta ccggcttgat
     9541 taaaaataat atcccatctc gtatcgcatt tgcggtgagt tcgcaaacag actctcgtac
     9601 aatcattgat agtggtggtg ctgagaaact gttaggtaaa ggggacatgc tctttattaa
     9661 aaatggcggt tcgacgagaa cacgtgtcca aggtgccttt ttaagtgacc aagaagtaca
     9721 aacgatcgtt gattacgtcg tggcacaaca aaaagcgaac tatgtaaaag agatggaacc
     9781 agatgcggta acagaaggta gtacagcaag cgaaagtgat gatccgcttt acaaagaagc
     9841 ttatttattc gtacttgaac aacaaaaggc gagtacgtca ctgcttcaac gccagtttag
     9901 aattggttat aatcgtgcat caagaattat ggatgattta gaacgtaatc aagtgattgg
     9961 cccgcaaaaa ggtagtaaac cgagacagat tttagttgat ttaaatggtg gagaggtgta
    10021 acgcatatgt ctgtaaatcc tgatgtgaat attgtaaaag aatggattct taaagaaata
    10081 gaggcagaaa acattaaacc tggcgaatcg ttaccaggtt tattggccat tgcacgtcaa
    10141 ctcgatgtca caacggataa tgtacaagta gccattcatg agcttgtgac cgaacaaatt
    10201 attacacaaa attttgaaga gggggcacgt gttaaaattc cgcaaccgtt tttctaccct
    10261 ttagatgaat tgatgagcat tggccggatg atttctgata aaggttatga aagcggaacg
    10321 gtatttttaa gtcttgatga agaaatcgct tctctcgacg actgtaaagt gatgcaatta
    10381 gaaccgaatt caccgattac agtgattgaa cgtatacgca cagctaatag tcagcctgtt
    10441 gtatattgtt tggataaggt gacaacaaac gtattggctc attttgggac acataatcaa
    10501 caaacgtcca ttttaaaagc gattgaagct gagagtcatc aaacgattgc ttatgctgaa
    10561 actgaaatgg aagccattag ttatgaacct tatatttcag acgcactaga agctgacccc
    10621 caagacgggc tcatgttatt gagacaagtc cattacacag aagatggcac gccgatactc
    10681 tattctttaa attattttaa aagtagccta gtgaagtttc gaacaattcg aaaacgtcta
    10741 taactatatc aaaaccattg ttaaaggagg agttgcatga aacaacttca agattacccg
    10801 gatcaacgta tatccgtttt atcaacaaac aaatttaaaa cgacgacgat gacatttaaa
    10861 ttcatggccc cattagataa aaaaacgatg actcaacgtt ctttgttaag taaattactc
    10921 gtccgtgcca cacaacaatt tccaacagat aaagtattca atcaatatct ctctgaattg
    10981 tatggtgctt atgtcaatag ttacgtgtcg aagtacaaag accgccacgt cattactgtt
    11041 acacttgaaa ttgtaaatga acgttatttg ttagatgatg aatcattgtt tgacaaaggg
    11101 atcgcattat taaaagaggt cattctgaat ccacttgtta aaaatggtgc ctttgatgaa
    11161 acgtttgttg cacaagagaa aagtttattg aagaaaaaac tgacagcgat tgaagataat
    11221 aaatcacaaa ttgcgtattt acgtttactt aagcatatgt ttggtgagca tccttaccgt
    11281 tatatggcag caggcgacct agatgaaatt gatagcatta cagcgacaga cttatatgat
    11341 acatatcgtt cgatgttaaa tgatgactac tgttcagtat acgtggtagg caatgttgag
    11401 gaagaagcta caattcaaca tatacaatca gaatttaata ttcaaccttt tacatatcaa
    11461 gcgacacaat tcggtcaaca tattcagcat gatgcacctg ttaatgaagt gattgaacaa
    11521 gacagtgtag atcaggcaaa attaaacatg ggttttcgtt ttcctaccca atatggtgaa
    11581 aaagattttt atgcatttct tgtgttcaat atgatgtttg gtggagaccc ttcatcagtg
    11641 ttattcaatg aagtccgaga acaaaagagt cttgcttact caattcattc acaaattgat
    11701 ggcaaaaatg gtttcctatt cgtcatgagc ggcgtttcag ccaaagatta ccaattagcc
    11761 aaagaaacga ttattgaggc atttaaccgt tttaaaacag gggactttac agaggacaaa
    11821 atggcattag cgaagaaaat cattttatcg ggacgtaagg aatcgaaaga ccgtccgaaa
    11881 aatatgattg aaatgatgca taatcaattg ttgctcgaag ttccagaaac ggatgaccaa
    11941 tatgaagcac gtatacaagc cgttaaacat gaagacattc aacgtctctg tcaaaatgcg
    12001 catcttgata cgatttatat tttgacaaag gaggatgata cagatgaata aaacatacta
    12061 tcaacaaatt gatgaaacgg tctatcattc tactttggcg aacggcttga acatgttcat
    12121 tattccaaag aaggattttc aaaaaacgtt tgtgacatat acaacgcagt ttggttcatt
    12181 agaccatcgt tttaaaccac atggtgcaga tgaattcgtt tcagtcccag atggtgttgc
    12241 tcatttctta gagcacaagt tgtttgaaaa ggaagaaggc gacttattta cagaatttgc
    12301 cgaacatgat gcgcaagtga acgcatttac aagcttcgac cgtacgagtt atttatttag
    12361 cgcaacaaac catattgacg acaacatttt acgtttatta aaaatggtag agtcacctta
    12421 tttttcagaa gcatcagtag aaaaagaaaa aggcattatt gcagaagaaa ttaaaatgta
    12481 tcaagagcag ccgggatacc gtttgatgtt taatacgtta cgtgcgatgt atcaagatca
    12541 tcccgtacgt gtcgatattg cagggtcagt tgagagcatt tatgaaatta cgaaagacga
    12601 tttatattta tgctatgaaa cgttttacca cccttctaat atggtgctat ttgttgttgg
    12661 tgatgttgat cctgagcata ttgaaaattt agttcgtaca catgaagatg cacgcggaat
    12721 cgtggcacaa ccagagattg aacgtgatcc actcaatgaa cctatcgaag tgattgagca
    12781 ccaagtcgtt gaatcgatgg cccttcaatc gccaagaatc atgctcggct tgaaacatcc
    12841 agtctatgat ttgtctcgcc gtcaaggtgt caaagaagat atcgaaatgt catttttctt
    12901 tgagatgatc tatggtgaag aaacgaattt ttatcagtcg ttattgagcc aagatttaat
    12961 tgatgatacg ttcagctatc aaacagtcat tgagccgaca tacagttttt cattaatcac
    13021 atcggcaacg acagaacctg aacagttaaa aacgttacta ttagacgaat tacgtgcacg
    13081 aatcggtacc ttagatgacc aacacgcgtt cgatttgtta aaacgtcaat ttattggtga
    13141 atatatctcg agcttaaatg caccagaata tatcgcgaat caatccacga agttttattt
    13201 tgatggtgtg agtttatttg aattattgaa tgtgatcgat agtattacgt tagatacgat
    13261 gaatgaaacc gttcgccgtc gtatcgatat gaatgcactt gtcgatagtc gtttggagat
    13321 taaaaagcca tgaaagcaat cgtcatcggt ggttctggaa caataggtcg tgcaataacg
    13381 catgatcttc tttcaaatgg ttatgaagtg attgtgacat atcatcacac tccgttagca
    13441 actttgatgg atgaatttca agggcaacct gtgcaatttg tgcaactgga tttgtctcaa
    13501 cctgtaaatc tcgaggaaaa attaggtttt gtgcgcaatt tagatgcact catttatgcg
    13561 agtggtcata gtttatttgg catgctacaa gatatgacag ataccgatat tcatgaagcg
    13621 tatcaagtcc atgtttttca tttcattaaa atgacacaat attttgttag ccaactcatt
    13681 caaagtccac acggcagaat tgtagcgatt tcgtctattt ggggtgaaac gggggctagc
    13741 tttgaaacga tttattctag tatgaaagcg gcacaaattg gttttgtaaa atcgttggcc
    13801 aaagaattag ctcgtacatc agtgaccgtc aatgcgattg cccctggtgt cgtcgcgggt
    13861 tcaatgacgg atggtctcga tcatgcagca cgtacagcat tgttagagga agtgcctcaa
    13921 aatcgttggg ttgacccaaa tgaaattgca cacgccacgc gctttttatt atcgccatta
    13981 tcgcaaagtg taaccggtac agttcaacgt atcaatggtg gttggtattg ctagtttgat
    14041 ataatgggga ttaaagataa aagccactgt tgacattaag ggggatttta atgattacac
    14101 gagaaaaacg cgaatggtac ttagaatatc aaattaatgt gaatcgtgca gggttattag
    14161 gtgacgtttc gagtttatta gggatgatgg gcataaatat cggaacgatt aacggtatcg
    14221 atcagtccat tcgtgccttt attattaaat cagatagcga agaaaagatt aaacgttttg
    14281 agacattgtt aaaagaaatt gatgacattt cgttaagagt gttacgcgag cctgaattga
    14341 aagatagact tgcagtaaga cacggacgat atgtaaaaca agacgaacat gacaaaaaaa
    14401 tattccgttt tgaaagagat gatttagggt tactcgttga ctttatggca gagttattta
    14461 aagaagaagg acacaaattg atcggtattc gaggcatgcc acgtgtcggt aaaacagaat
    14521 ctatcgttgc gggcagtgtt tcagcgcata aaaaatggtt gtttatcagt tcgacactta
    14581 ttaaacaaac ggtgcgaagt tctttaatta aaggtgaata cgataaagat catgtgtaca
    14641 ttatcgatgg tgctgtgaca gcaagagaaa cgaatccgaa acatcaggaa ctcgtgaaag
    14701 aagtcatgac cttaccatct gtcaaagtag tggaacatcc ggatttattt gttgaagcga
    14761 gtgactatat tatggatgat tttgattata ttatcgaatt gcgtgccgaa gaaaaccaag
    14821 aaattgaata tgaagaaatg aaaaagaaaa cagtcagaag taaaaataat ttagattttg
    14881 gtgatacttt tggtggcttt ggtgacggtt ttggtgatgg attcggttca ttgtaacgat
    14941 ggagggaata acagatgcgg accattggag aagtattaca aagcaaaaga gaacgtttag
    15001 gtatgacgtt aactgaacta gaaaaaagaa cgcaaattca acgagagacc ctcgtggata
    15061 tcgaacaaaa tcgttttgat cagttcaaac atccgaacca cattcgtggg tttattcaaa
    15121 aatatgcaca atctgtcaat atcgatggac gtatactcat ggaaaaacat catgaagaac
    15181 tccctgcagt ccaacatcaa gcccacgtga tattagaaca aatcgcccag caaaaagagg
    15241 tgctaacttt tacacaaaca gatcaacaac ctaaaaaagt ggcgatttta atcggtttat
    15301 tgacagctgt tacagcggta ctttgggtgc tcatgaccct tatgttataa taagcgtatc
    15361 agatatagat tgagtgaaaa gaggagcaaa catgaatata ccgaatcaga ttaccgtctt
    15421 tcgtgttatt ttaatcccta tttttatgtt atttgcactt gtagattttg ggatggggca
    15481 agtgacattt ttgggaggac agccgattcg tattgaattt ttaattagtg gaatcatctt
    15541 tattttggcg tcgttaagtg actttttaga tggttattta gcacgtaaat ggcaaattgt
    15601 tacgaatatg gggaaatttt tagacccact tgcagacaaa ctactcgttt ctgctgcact
    15661 gattgttctc gtcgaacttg gtttaacgaa ttcagtcgtt gcagtcatta ttattgcccg
    15721 tgaatttgca gtgacaggat tacgtttatt gcaaattgaa caaggttttg tcagtgctgc
    15781 gggtcaatta ggcaagatta aaacggcagt gacgatggtt gcattgattt taattttatt
    15841 aggagaacct ttcagccagt ggattggttt cagcttagga caggtgttat tatacatcgg
    15901 tgtctttttc acagtacttt ctggtattga gtatttttac aaaggccgcg acgtattttt
    15961 acaagataaa aaataagcaa tgcacctatt taaaaatgat gatgacaatg aagcaaccat
    16021 cattttttgt aacaatattt cattgattaa taacaaacat gaatggctag ggtcagtttc
    16081 ctagtcattt ttttattctt tttagcgttt ttctttttta taaaatagtg atgtaagata
    16141 aaatgaaatg taatgaatac gacaatccac acgaacgaga gatgggggac gaaaatatga
    16201 aagtatgtat tatcgcagtg ggatcagaac tgctgctagg ccaaattgtg aatacgaatg
    16261 cgcaattcgt atcgcaaaaa tttaatgaag cgggacatca tgtgttagaa catattgtag
    16321 ttggagataa tgcgcaacgt cttgaaaatg tgacaagacg tgctttacaa caatatgatg
    16381 tgctcatatt tacaggggga cttggtccga cgaaagatga tttaacgaaa caaacagtag
    16441 cagaagtgtt gaacaaagac cttgtcatga atcaagaagc aatggattat atagaagatt
    16501 acttcaaaca acatggtaaa gttatgacac cgaacaataa acaacaggct ttagtcattg
    16561 aaggtgcaga agttttagca aatcaagtcg gcatggcgcc aggtatttac gtccggcatg
    16621 acaatcaaca tatcgtgatg ttgcctggac cacctaaaga acttcagcca atggtcgaaa
    16681 atgaattgat cccacacttc tctcaaggtg gtcaaacgat tgaatcagaa gttttacgtt
    16741 tttgcggtat tggcgaatca caagttgaaa cggaactgat ggacttgatt gatgcacagt
    16801 ccaacccgac gattgcgcca ttagcaggaa cgcatgaagt gacaattcgt cttacagcaa
    16861 gtggtgagag taaggaagta acaaagcagt taattgcacc gataaaacaa gaaatattaa
    16921 aacgtatcgg attgtattac tatggctcgg atgacatgac tcctgagcgt gcggttttac
    16981 aattacaaca tcaaacgttt acggtatatg accaagtgac agatgggtta ttacatgccc
    17041 gtttgaagca agaagattca caacatttat tgaaagggta tatgctacat cacccgcaat
    17101 ttttagatgc atctgttgca attgaagatc agctctattc agcggcgttg tttgtgcaag
    17161 cactttatga cagcgaacag gccatcagca tactgtcaca agataacaca gtttatattg
    17221 gattattagc tggcgattca tttcaagtta aaactattaa aatgacgcaa atgaggcatc
    17281 tgcaacgtga cagaagtcaa aattatattt taattacgtg gttaaattgg ttgaaatatc
    17341 ctgaaaacca gtcattaatt gatcaaatat aagtacatgc gttctatttt ggagaaaatg
    17401 cagtccaaaa ataacgaaca aacattcgca aaacacttgt aatttgattt aataccatgt
    17461 atagtagagt taaattaaaa ggaaatttcg atcaagtagg gggtcctaaa ttggataatg
    17521 aacgtcaaaa agcgctagat acagtaatta aaaacatgga aaaatcattt ggtaaaggtg
    17581 ccgtaatgaa actgggcgag aataaagatc gccgtgtttc aagtgtttca agtggttcgg
    17641 taacgctaga ccatgcatta ggggttggcg gctatcctaa aggtcgtatc atcgaagttt
    17701 atggccccga aagttctggt aaaacaacgg ttgctttaca tgccattgct gaagtacaaa
    17761 aaaatggcgg tgttgccgca tttattgatg ccgaacacgc actcgatcca gtttacgctg
    17821 aagcattagg tgtagatatt gataacttat acctttcaca accagaccac ggggaacaag
    17881 gtcttgaaat tgcagaggcg tttgtcagaa gtggcgcagt ggatattatc attgttgact
    17941 cagttgcggc attgactcct aaagctgaaa ttgaaggtga aatgggtgat acgcatgttg
    18001 gtttacaagc gcgtttaatg tctcaagcat tgcgtaaact ttctgcagcc atttcaaaat
    18061 caaaaacaac agctatcttt attaaccaaa ttcgtgaaaa agtaggcgtt atgttcggta
    18121 accctgaaac gacaccaggg ggccgagctc tgaaattcta cagctcagtt cgtttagaag
    18181 tgcgtcgtgc tgaacaattg aaacaaggtc aagatattgt aggtaaccgt actaaaatta
    18241 aagtggttaa aaataaagtc gcaccaccat tcaaagttgc agaagtggat atcatgtatg
    18301 gtaaagggat ttcacgcgaa ggagaattga ttgatttagg tgtacaatac gacatcgttg
    18361 ataaatcagg tgcttggtat tcatataacg gtgagcgtat gggtcaaggt aaagagaatg
    18421 taaaacaatt tctacttgaa aaccctaaac ttgaagatga aattgaccgt aaattacgtg
    18481 aaaaactcgg catttatgat ggtgatgtag aagaatctga acaagaagaa acacaaacgc
    18541 tttttgatga ataacaatgt ctaaaattca tttgaaaagt actgtgttca ataaaaaagc
    18601 gatgttggca ggattcattc attctgtgtt catcgctttt tatttgtaat cacgacagaa
    18661 accttgattt ttcgttgttc aaaacgtaca attgaacttg tatgattctt atttttatcc
    18721 atataatcat atagatttat taacatacag aacgaaatcc tagaaaaagg aggtgtttgt
    18781 gtgaatttat taagcctctt actcattttg ctgggtatca ttctaggagt tgttgtaggg
    18841 tattttatcg cccaaaactt gatttaccaa aagcagttgc aagcgaagca aactgcgaaa
    18901 gatattcttg aacaagcaaa caaagaagca gaaaacctta aaaaagagaa gttaatcgaa
    18961 gcgaaagaag aaaaccaaat tctccgagaa cgtgttgaaa acgaacttag agaacgacgt
    19021 actgagcttc aaaggcaaga atcccgactt cttcaaaaag aggaaaactt ggagcgaaaa
    19081 tctgatctac ttgataagaa ggatgagatt ttagagcaaa aagaatctaa acttgaagaa
    19141 agacaacaac aagtagatgc aaaagagagt agtgttcaat cgataataat gaagcacgaa
    19201 caagaactag aacgcatctc cggtctcaca caagaagaag cacgtaaaga acaattatcg
    19261 cgtgtagaag atgagttgtc acaagatatt gcagtacttg ttaaagaaaa agaaaatgaa
    19321 gcaaaagaaa aagtaaacca aaatgctaaa gagttgctcg ctacagtagt gcaacgtttt
    19381 gctgcagatc atacttctga atcaacagtt tcagtagtaa acttgcctaa tgatgaaatg
    19441 aaagggcgaa ttattggtcg tgaaggtcga aacattcgta cattagaaac gcttacaggt
    19501 attgatttga ttattgatga tacgccagaa gcagttattt tatcaggttt tgacccgata
    19561 cgtcgagaaa ttgcgaaaac agcattaatt aatctagtat cagatgggcg tattcatcct
    19621 ggacgcatag aagatatggt tgaaaaatca agacgtgaag tagacgaaat tattcgtgac
    19681 gctggtgaac atgcaacatt cgaattaaat gttcataata tgcatccaga tttaattaaa
    19741 atattaggtc gtatgcatta ccgtacaagt tacggtcaaa atgttttgaa acattctatt
    19801 gaagttgcac atttgtcagg tatgctcgct gcagaactga atgaagatgt gacattagcg
    19861 aaacgtgcag gtttattaca tgatattggt aaggccattg accatgaagt ggaaggcagt
    19921 cacgtagaaa ttggtgtgga gttagctaaa aaatatggcg agcctgaaac agtgattaat
    19981 gcgatacact ctcatcatgg tgatgtggag ccaacttcta tcatttcaat tttagttgct
    20041 gcagctgatg cattatctgc tgcaagacca ggggcaagaa aagaaacatt agagaattac
    20101 atcaagcgtt tagagcgttt agaagaaatc tctgagaatt atgaaggtgt tgaaaaggcc
    20161 tttgcgattc aagcaggtcg agaaattcgt gttattgtag aacctgatac gattgatgat
    20221 ttaaaatctc accgtttagc gcgagatatt aaaaatcaaa ttgaaggtga attgcaatat
    20281 ccgggtcata tcaaagtgac agtcgttcgt gagacgagag caattgaata tgcgaaataa
    20341 ttgcgtatga aaacgaaaag caagtttctt tattaaaggg tataaagaaa cttgcttttt
    20401 tctgtgcgtt aagtattgct tgttgttcgc attaaaggct catttcaaaa tcatatgatg
    20461 tcttatctat aaagatttaa ttctgtctct ttcaacgctt ccaatgcact tgcggtatca
    20521 tagcaatttg aagaaatatt cgtgtagcgt tctgccatac gataggcgtg aatatacaaa
    20581 tcaatacttt cttttgcgat ttcttcaggt tttaactttt tagacggatt tgcgctcact
    20641 acaagttctg caaatttttc tggatcaata tgaattgaca taaatgataa aacatctcct
    20701 cgtttttgtc ttatacctca cttatgattg aatcgaacca taagtcttcc taaaagtgca
    20761 ttaccctctt cgttatcaat taatcatatt tttcattcaa acgaatgctt gaatgttctg
    20821 tgaaaagaag ttataattta aatataaaaa taatatataa gaaggatatg aagatgttat
    20881 gactcaaaaa attgcaactt gtgatacttt tagtattgac gttgaagctg tacaacagtc
    20941 aaaagaggag attgccgctt cgaatattga acaggtgagt caaatgttta agagtattgc
    21001 cgacattaac cgctctaaaa ttgtcctcgt gctttgtcat cataatgaat tgtgtgtttg
    21061 tgatattgcg gaaattttaa atgtaaccgt tgctaatgcg tctcaccacc tgagatctct
    21121 ttataaaaac ggcattgtga cttttcgcaa atcaggcaaa cgtgcatttt atcgtttgta
    21181 tgatgaacat attcgacaat tgatgatgat atctattgaa cataagaaag aagtggatga
    21241 tgatgattca aagtcgtaaa acttacagaa tagaaggttt atcatgcgcc aattgtgctg
    21301 ggaaatttga aagaaatgtc cggggtcttg cgtcagttga agaggcacaa gtcaattttg
    21361 gtgcttcgaa aatttatgta acgggcgacc caactgtaga agaattagaa ggggcgggcg
    21421 catttgaaaa tttaaaattg acattagatg agcggaaaaa gattagtgcg aacgctgacc
    21481 gaagcacaat ggcgcaaccg acctcttggt ttgataaggt caaacagttt tataaagcgc
    21541 atcaatctat atgtgtagcg acgttgttca tgctacttgg ttacatttca catttgatga
    21601 gcggcgaaaa ccatttgatg acaattttac tattcgcttg ttcgatatta ttaagtggaa
    21661 gcgcgctact catccgtggt gttaaaaatt tagtgcatgt tgaatttgat atgcatacat
    21721 tgatgacgat tgcggttatc ggtggtgcaa tcattggtca atggggagaa gttgcagcgg
    21781 tcgtcatttt atttgcgatg agtgaggcac ttgaaacgtt ttctatggat aaagcacgtc
    21841 agtcgatgca atctttaatg gatatcgcgc cagatgaagc gacagtttta agggacggtc
    21901 aacatgtaaa ggtacctgtg gatgacattg taatcggtga aaagttatat attaaaccgg
    21961 gacaaaaaat tgcgttagac ggtgttgtcg ttgagggccg tgctgcagtg aatcaggccg
    22021 cgattactgg tgagtcgatg ccggttgaaa aagtgggagg tgcagaagtt tttgctggga
    22081 cattgaatga agatggcatc cttgaagtgc gtgtcacgaa aacagcagca catacgacat
    22141 tagcgaaaat gattcaactc gttgaagaag cacaattaaa tcaaacacca gcacaagcat
    22201 tcattgaaaa gtttgcgcgt tattatactc ctgccattat ggttatcgcg atactcgttg
    22261 cgatagtgcc gccagtagtg ttacatcaat cgtttttaac atgggtttat caaggtttgg
    22321 ccgtgcttgt tgtcggctgc ccttgtgcgt tagtcattgc aactccaatt tctatcgtat
    22381 caagtattgg taatgcagca aaaaatggtg tgctcattaa agggggcatc cacctagaac
    22441 aaatcagtcg tgttcgtgcg ttagcttttg ataaaacagg gacactgacg aaggggcacc
    22501 ctgaagtgac cactgttctg ccattaacag agatgcgtga tgacaccgag ctgattggtc
    22561 aaattgcagc tatcgaaagt cgttcggatc atccgttagc acgggcaatt gttcgttatg
    22621 ccgaaacaaa gcatcaccat tttgattcat atgatgtgac agattttcat tcacaaacag
    22681 gccaaggggt gagggcgaac gttgaagggc gtcaattcat cattggacaa ccgcaaatgt
    22741 ttaaaatggc gcaatcgacg atgaaaacgc aaattcaaca attacaagag caaggaaata
    22801 cagtcattat cgtgtcagtg gatgatgtgt tacgtctatt aattgcagtg cgagatgaag
    22861 tgcgtgaaca gtctcaaaaa gcgatacaga cgcttcatga gcttggcatt caacataccg
    22921 ttatgttgac aggagacaat gagaaaacag cacgaacaat tgcgcaaaca cttcacatgt
    22981 cagatgttaa agcagatttg atgcctgttg ataaattaaa tgaaattgaa cagcttaaac
    23041 agcaatatgg gacagttgcg atggtcggtg acggggtgaa tgacgcacca gcactggcga
    23101 gcgcatcagt gggtattgcg atggggggtg cgagtacaga taccgcactt gaaactgcgg
    23161 acattgcact cctcagtgac gatatgtcga agttaccttt tacatatcgt ttgagtcaaa
    23221 aaacaatgcg tatgattaag gcaaatatta cgtttgcaat tgcgattaaa ttattagcgt
    23281 tgttacttgt gattccaggt tggttaacgt tgtggattgc ggtattttct gatatgggtg
    23341 caacattgat tgtcgcttta aatgcaattc gtctcctgta tgttaaagca gataatactg
    23401 aggtgacgac agagtaaatg atatagccgt aatgactaaa aatcttcaaa atggagttag
    23461 cgctgccttg atgaagtatg ataaaaaggt tcgcgtcaac tggcgacgac aattttacgc
    23521 gcatacattg acatcgatgg tgagaacggt acaataaaac gtatcaacat acatgtaaaa
    23581 tcgtgatgtc aagcagttca aacatgacga tgaacaaggg acgtgtcatg acaaaaatgt
    23641 tgatgagacg tctcttttat aatgtttttg catctcccca gtgataaggt tgctatttaa
    23701 aaaacgataa agaatagcga ttaaggggat tagagaggac gaaaaatatg aggattttat
    23761 ttataggtga tattgttgga aaggtcggtc gccaaacgat ttcagagctg ttaccgaaac
    23821 tcaaacaaca ttatcgtcct acgttaacga ttgtgaatgc tgaaaacgca gcacacggca
    23881 aagggttaac tgaaaaaata tataagcagt tgttacgtga aggtgtcgat tttatgacga
    23941 tgggcaatca cacgtatgga caacgtgaaa tttatgattt tattcatgag gcgacacgtc
    24001 ttgtgcgacc agccaatttc ccagatgaag caccaggcgt tgggatgcgt atccttcaac
    24061 ttaacgctaa aaaattggca gtcatcaacc tgcaagggcg tagttttatg ccaatgattg
    24121 acgatccatt taaaaaggca gatcaactga ttgcagaagc tgaaaaagaa gcggattata
    24181 tttttgtcga ttttcatgct gagacgactt cagaaaaaaa tgcgatggcg tggtatttag
    24241 atgggcgtgt gagtgcaatt gtaggtacgc atacccatat acaaacgtca gataatcgca
    24301 ttttgccaca aggaacggca tatattacag atgtcgggat gacgggttat tatgacggta
    24361 tattaggcat taaccgcgat gaagtcatta agcgttttat tacgagttta ccgcaacgcc
    24421 atgttgtgcc ggatgaagga cgaagcgtat tgtcaggtgt cattattgat ttaaaagaag
    24481 atggcacagc gaagaaaatt gatcgcattt taattaatga agatcatcca tttgaagcgt
    24541 aatcatataa atacgttcaa aaagtggctg aattgtgata tatccctatc cgccattagt
    24601 atgaattttt tcaaacccac tattttgtaa agcaaatggt gggttatttt gataaaatat
    24661 tgagtgaatt caaacgtgta ggaggctaaa tctatgaaat ctcaattatc atggaaagtg
    24721 ggaggtcagc aaggcgaagg tatcgaatca acgggtgaaa ttttcgctac tgctatgaac
    24781 cgcaaaggct attatttata cggttatcgt catttctcaa gccgtattaa aggtggtcat
    24841 actaataata aaatccgtgt ttcgacaaca cctgtgcatg ccattagtga tgatttagat
    24901 attctggtag cgttcgacca agaaacaatt gtgttgaacc atcacgaaat gcgtgaagat
    24961 agcgtcattt tggcagatag taaagcaaaa ccagagaagc cagaagatag taaggcgcaa
    25021 cttatcgtcc taccatttac agaagtggct aaagaattag ggacgacttt aatgaaaaac
    25081 atggtagcga ttggtgcaac tgcggcatta atgcacttaa atacggatac ttttgaatcg
    25141 ttaattacga atatgttcga gaaaaaaggt gaaaaagtag tcgacttaaa tattcaagca
    25201 ttaaatgaag gctatcgttt aatgcaagaa caaatgggtg aagtgaacgg agactttgaa
    25261 ttagaagaaa gtagcggcgt acctcacctt tatatgatcg ggaatgatgc gattggttta
    25321 ggtgccattt cagcgggctc aagatttatg gcagcgtatc ctatcacacc agcttcagaa
    25381 gtcatggagt atatgatcga caatttacct aaagtaggcg gctcagtcat tcaaacagaa
    25441 gatgaaattg cagctgcaac gatggcgatt ggtgcaaact acggcggtgt acgtgccttt
    25501 acagcatcag cgggtccagg tttatcatta atgatggaag caataggttt atcagggatg
    25561 actgaaacac catttgtagt cattaatacg caacgtggtg gcccatcgac aggtctaccg
    25621 acaaaacaag aacaatctga cttaatgcaa atgatttacg gtacacatgg tgatattccg
    25681 aaaattgtgc ttgcgccaac agatgcagaa gacgcatttt acctaactgt agaggcattt
    25741 aacttagctg aagaatatca atgtccagtc atcttattaa gtgacttaca actgtcatta
    25801 ggtaagcaaa ctgtgaaagc actcgatcat tcaaaaattg aaattcgtcg aggtgcaacg
    25861 attacggaag acattgaaag agatgaggac gacaaagact acttcaaacg ttatgccgtt
    25921 acagaatctg gcgtatcacc acgtccaatt ccgggtgtta agggtggcat tcaccacgtg
    25981 acaggcgtcg agcataacga agaaggtaag ccgagtgaag cagcagaaaa tcgtcaaaat
    26041 caaatggata aacgtatgcg caagacagaa aaattagtca ttccaaaacc ggtagaaggt
    26101 acaacaacac atgatgatgc ggatatttta taccttggat ttatttcaac aaaaggtgca
    26161 atccaagaag ggactttacg tttagaacaa caaggctacc acattaacca tttacaaatt
    26221 cgacaattac atccattccc aacagaagtc attcaagatg ctgtggataa agcgaaaaaa
    26281 gtcgttgttg ttgaacataa ctatcaaggt caactggcaa atattattaa aatgaacgtg
    26341 aacttaggtg acaaactcat caaacaaacc aaatatgatg gtacaccatt tttaccacac
    26401 gaaattgagg ataaaggttt agaaattttg aatgcattaa aggagagagt gtaattggct
    26461 acgtttaaag attttagaaa taatgtgaaa cccaattggt gtccaggctg tggtgacttc
    26521 tcagtacaag cggctatcca aaaagcagct gcaaacgttg gattagaacc agatgaagta
    26581 gcactcatta cagggattgg ttgttcagga cgtctttcag gttatgtgaa ctcatacgga
    26641 gtccattcca ttcatggtcg tgcattacca cttgcacaag gtgtgaaaat ggccaatcgt
    26701 gatcttactg ttattgcttc tggtggtgac ggtgatggtt acgctatcgg tatggggcat
    26761 acaattcatg cattacgccg aaatatgaat atcacttaca tcgtgatgga caaccaaatt
    26821 tacggcctga ctaaaggaca aacatcacct tcatcagcac caggtttcgt aactaaaaca
    26881 acgcctaaag gtaacatcga acaaaacgtg gcaccgttag agttggcatt atcttcagga
    26941 gcgacatttg ttgcgcaagg tttctctagt gatattaaag cgttaacgaa gattattgaa
    27001 gatgcgatta atcacgatgg tttttcattt gtcaacgttt tttcaccatg tgtcacatac
    27061 aataaaatca atacgtatga ctggttcaaa gagaatttaa ctgctattga tgatattgaa
    27121 aattatgatg tcagcaataa acaagctgca ctacaaactg tgattgagca tgattcatta
    27181 gtgaaaggga ttgtctacca agatacgaca acaccttcat atgagtcaca aattgatggc
    27241 ttagcagaaa ccccattagc acatcaagac ttgaatttaa cagaagagca gtttgagtca
    27301 tttacaaagc aatttatata aaaagtttca tatatttaag cgtattcacg cacactaaat
    27361 atcgtactaa taataaggct agggtcgcac atgtgcctag tcttattttt ttgcatcact
    27421 ttcaaccatt aaatgaaagt taagaaaatt atagtctttt cgtagcttaa aaatagaagt
    27481 caaatcagtg gcaaatacaa gcctatcaac tgaaagacct ttatttttgc aacgtgatgc
    27541 aatcaaagtc ataataaaat gtattaagga ggttttcata tgatagatac gttaatgagc
    27601 attcaaatta tcccacaaac acctcatgga gaagatgtga tcccttttgt ggatgaagcg
    27661 atcaaagtga tagatgaatc aggcttaaat tatcgcgtcg gaccattaga aacaacgatt
    27721 gaaggcgaaa tgagtagttt attaatctta attcaaaaaa tgaacgagcg tatggttgaa
    27781 ctcgaatcac caagcattat tagccaagtg aagttttatc atgtgactga aggtattagt
    27841 atcgaaacgt taacgggcaa gtatgacgaa atggcttaat caattgcaca acttcaatag
    27901 aatttacaag atatcatttt gcactttccc tagattttta atataatgaa ctaatgatat
    27961 atgggcagaa agggttttgc atgtgaatga agaacaaaga aaagctggaa cgattgatgt
    28021 cttagcgcaa cgtgacagta aagaagaaaa agattatagt aaatatttta attttgaaca
    28081 cgtttatcaa ccaccaagtc ttaaagacgc gaaaaaacgt ggcaaagaaa ctgtgcaata
    28141 taaccgtgat ttccaaattg atgagaaatt tcgcggtatg gggaaaggtc ggacattttt
    28201 aattaaaaca tatggttgtc aaatgaatgc gcatgataca gaagtcatgg cagggatttt
    28261 gacagcttta ggttatacac cgacagaaga tgtgaatacg gccgacgtta ttttattaaa
    28321 cacgtgtgct attcgtgaaa atgcggaaaa taaagtgttt ggtgagattg ggaacttaaa
    28381 gcatattaag caagagcgcc cagattgctt aattggtgtt tgtggatgta tgtcacaaga
    28441 agaatctgtt gtgaataaaa ttttaaaatc ataccaaaat gtcgatatga tttttggtac
    28501 gcataatatt caccgcttac cacaaatttt agaagaagct tatttatcta aagcaatggt
    28561 ggtagaagta tggtctaaag aaggcgatgt cattgagaac ttacctaaag tgcgtcaagg
    28621 ccgtattaaa gcatgggtga atattatgta cggttgcgac aaattttgta catattgtat
    28681 tgtgccgttt acacgtggta aagagcgtag tcgtcgccca gaagatatta ttgaagaagt
    28741 gcgtgattta gcacgtcaag gctatcaaga aattacattg ctcggccaaa acgtgaatgc
    28801 atacgggaaa gacatcgaag atcttgagta tggtttaggc gatttattgg cggacatttc
    28861 aaaaattgat attccgcgtg ttcgctttac aacaagccat ccatgggact ttacagaccg
    28921 tatgattgaa gtcattgctg aaggtggtaa tattgtgccg catattcact tgccggtgca
    28981 atcaggtaat gaccaagtgt tgaaaattat ggggcgtaaa tacacgcgtg aaaactatct
    29041 tgatctcgta gcacgtatta aagcagcaat gccagatgtt gctttaacaa cagacatcat
    29101 tgtaggttac ccgaatgaaa cagaagcaca atttgaagaa acgttatctt tatatgaagc
    29161 agtcggcttt gaacatgctt atacgtatct ttattcacaa cgtgacggta cacctgctgc
    29221 taaaatgaaa gacaatgtac cgactgatgt aaagaaagag cgtttgcagc gtttaaaccg
    29281 tcttgtcggt gaatattctt cacgtgcatt aaaagcgtat gaaggtgaaa cagttcgcgt
    29341 attatgtgaa ggtgcaagta agaaagatga agcagtttta gcggggtaca ctgaaaagaa
    29401 caaattagtc aacttccgtg cgccaaaatc tgttatcggt aaaattgtag atgtcaaaat
    29461 tgttgaagcg aaacaatatt cattaaatgg tgaatttgta ggtgtgagtg aaacaacgat
    29521 ggtgacggta tagatgtatt cacgtgaaat gattttggaa tcggctcaaa agttaagtgc
    29581 atccattcaa tcattagaaa cgatacaaca ttaccaacgg attgaaacac aaattcatca
    29641 aaatgagcaa attgcgcaat atatggcaga gttaaagcaa aatcaaaagc aatccgttaa
    29701 tctacaaaat tacgataagc ctgtcgcttt tgcgcgctct gaagaaaaaa ttgaagaaat
    29761 acaaaccaaa atcgatggaa tcccaattgt gaatgaattt aaaaaggcac aacatgaagc
    29821 gaacgaactg ttacatgttg tgattgggac tttatcagct agaattcaac aagaaaatat
    29881 cgaggctgag gacgatcaaa cgcacgaatg atataagtgg atagagtgga taaattgccc
    29941 tcagctctgt cggagagtga taagtttgaa cacacgtaaa ctaacactga ccgctctctt
    30001 tattgcagtc aatgttgtat taagcacagt gattgtcata ccattagggg cgattaaagc
    30061 agcacctgta caacatttcg tgaatgtact cagcgtcgtc attcttggac catggtatgg
    30121 actcgcgcag gcatttttat cgtcgtgcat acgcgtaatg tttggtacgg gtacaccatt
    30181 tgcctttcca ggaagcatga ttggggtctt actcggaagt ttattttact acgtgaaccg
    30241 acacctgttt gtcgctgcta ttggtgaagt gattggcaca ggaattattg gcagtttagt
    30301 ttgtattcca ctcgcttgga ttttaaatgt cgatcacttt ttaattaagc ctttaatggc
    30361 agcgtttatc gtttcaagca tgatcggcgc atccataagt tacgcgttgc tcattttgtt
    30421 gaaacgacga ggcgtattaa agcatttaga tttaaatcga aagtatcgaa aataacaatt
    30481 gaacgatgaa agcagtgtgt gggtaggatt tacttagaag tagaacacat gaaagatgag
    30541 gggctggggg cttaaacaac gcgtttatac tctcagcctt ttatgcttaa ttttatttgg
    30601 aagattgatc ctacctttcg gtttgctgaa ctttccatcg ctttcctagg gggcggctct
    30661 tcaactaaat ttggcttgat tgaagtaaaa attttgtaga agccaaattg gattttccga
    30721 gccaccttga tccctcagga gtctcggaaa gttcttgcaa acctgaatga ttccaccaat
    30781 caaatgataa gctaaagtct gagagtgatt ttggatggga tagaatatag tgagctgaac
    30841 ttcccatcgc gttcctaggg gctgaccctt caactaacca acgcttcgat tgaactgtta
    30901 cattagtgga agcgttggtg gattttcggg agcagtatag aaatctgacg tgcaacaaag
    30961 atttcgtcat actcccccgc taggctgact cgacttctca aaagcatagg cattgagcag
    31021 tcaggcagct acggcgttaa acaactaccg ctcaaaaaat gaagagacaa taatatgatt
    31081 taaacactag gccctcagaa gtcgtgtatg gttcttgcaa tcaaatactt agttaaagtc
    31141 tgagcggatt ttgaatggta cgaaaatgag cactgctaga ttacttaaaa gtgattcaat
    31201 ggtctagaac ggagatccat caattgtttt tttgatgaaa tgcaagtttt ttatgatcat
    31261 tattaatatt catacataga gggctgcttt tgtagcaaag tattacataa actcaaataa
    31321 aggaatgtga gaaatatatg tcaaatgtca cgccaatgat gaagcaatac ttgagtatta
    31381 aagcacaaca tcaagatgct ttactgtttt ttagacttgg tgatttttat gagatgtttt
    31441 atgacgatgc gattacggcg tctcgtgtgc ttgaaattac attgacgaaa cgcgacgcta
    31501 aaaaagataa tccgattcca atggcgggtg tgccttatca ttctgcagat agttatattg
    31561 aaacgttaat tcagaatggg tataaagttg cgatttgtga acaaatggaa gatccgcgcc
    31621 aagtgaaagg gatggtgaaa cgtgaagtcg ttcgtatcat tacgccaggt acagtgatgg
    31681 aaaaaggtgg cgtggatgat acacaaaaca actatatttt aagttttgtg aaggcggatg
    31741 gttatgcgct aagttattgt gatgtgtcca ccggagaatt aaaggtgacg cattttgaag
    31801 atgaaagtac gcttattaat gaaattacga caattcgccc aaatgaaatt gtcgtgactg
    31861 aaccattatc agaaacgcta caacgtcaac tgaatatgat tacagaaacg attactgtcg
    31921 ttgaacaagt ctcagatcaa aattattctg tgaacagttt gtcacatcct ttaatgcatc
    31981 aagcgataca aattgtgtta gattatattt atgatacgca aaaaagagat atgtctcata
    32041 ttgaagcggc tgttgaatac aaggcactcg attatatgaa aatggattac tatgcgaaac
    32101 gtaatcttga gttaacagaa agtattcgtt tgaagtcgaa aaaagggacg ttactttggt
    32161 taatggacaa gacgaaaaca cctatgggcg caagaaggtt gaaacagtgg gttgatcgtc
    32221 cacttattca acaagctgaa attgcgaaac gacatgatgc tgtcgatcaa tttttacatt
    32281 atttcattga gcgtgacacg ttacgtgact atttaacgga agtatacgac attgaaagac
    32341 ttgtcggtcg tgtcagtttt ggaaatgtca atgcgaaaga tttagtgcaa ctcaaacatt
    32401 caattgcaca aattccagcg attaaagcgt tattgcaatc aattgaacat gaagctattg
    32461 ctcactttaa tgctttagaa ccgttggatg acttactgca agtgttgtcg gacagtcttg
    32521 tcgatgaacc accgctttca gtgaaagaag gcggtttgtt taaagcagga tttaatgaag
    32581 aactcgatca atatttggat gcttcgaaaa atggtaaaca gtggttggcg caattacaag
    32641 cacaagaacg tgaacgcaca ggcattaaat ctttaaaaat tagttttaat aaagtcttcg
    32701 gttattatat cgaaattaca cgtgccaatt tatcacaatt tgatccgagt gcatttggtt
    32761 atgagcgaaa acaaacatta tccaatgcag agcgtttcat tacggatgaa ttgaaagaaa
    32821 aagaagcaat tattctcggt gcgcaagaca aatcgattga actcgagtat caattgttcg
    32881 tggcgttacg tgaacaggta aaaacgtata ttgaacgttt gcaacaacaa gcaaaaatca
    32941 tttcagaaat tgactgttta caaagttttg cagaaattgc gcaacagtat aattacgtgc
    33001 gaccacaatt tagtgaagat aaaacgttaa agttagtcga ctctcgtcat ccggttgttg
    33061 aacgtgtgat ggactataat gattatgtgc cgaatgattg tctattaaat acagagcagt
    33121 tcatttattt aattactgga ccgaatatgt caggtaaatc aacgtatatg cgtcaagtgg
    33181 cgattattag tattatggca cagatgggcg cttttgttcc ttgtcaatcc gcaacgttac
    33241 cgattttcga tcaaattttt acacgtattg gtgcggccga tgatttagta tctggtaaaa
    33301 gtacgtttat ggtcgaaatg ttagaagcac aaaaagcatt aaaatatgcg acggctgaca
    33361 gtttaatcat ttttgatgaa attggacgtg gcacttcaac atatgacggc ttagcactcg
    33421 cacaagcgat gattgaatat gttgcagaaa cgtcacaagc aaagacgtta ttttcaacgc
    33481 attatcatga attgacagag cttgaacaac atttgccaag cttgaaaaat gtacacgtgg
    33541 cggcggatga atatcaaggt gaactcattt tcttgcataa agtgaaagac ggtgcagttg
    33601 cgaatagtta cggcattcaa gttgcacaac tcgcagattt accagaacaa gtcattgcac
    33661 gtgcacaagt gattttggat acgtttgaag cgcatgaaaa agcacaagtg acgtatacat
    33721 cgaccgtgga ccaaaagtcg gtcagcccga caagtgtaaa agcatcgaca gttgctgaag
    33781 agccgccaca atttgaacag ccgacgtttg atttatttat gtctgaagct gaagtaagtg
    33841 aaattgagtt cgaaattaag caactgaatc tttctcaaat gacaccgatt gaagcattag
    33901 tgaaattaag cgaactccaa aatagattac aatagaaggt gaagagctta tgggtaaaat
    33961 taaaacgtta cacacttcat tagcaaataa aattgcagcc ggtgaagtgg tcgaacgtcc
    34021 aagttctgtc gtgaaagagc tgttagaaaa tagtatagat gcgggtgcga ctgaaattaa
    34081 tattgaagtc atagaatcag gaattgcctc cattcgtgtg gtcgataacg gctcgggtat
    34141 tttacaagat gatctaggtc ttgtatttca tcgacatgcg acgagtaaat tagtagaaga
    34201 tgatgacctg ttccatattc gtactttagg ttttcgtggt gaggcactgg cgagtattgc
    34261 ttctgtcgct aaggtgacgc tacaaacatc cacggatggt gtggccggtt atgaagtgta
    34321 tgctgaagag ggcgaaatca tttctgaaaa gcctgccaaa gcgcgaaaag ggactgacat
    34381 tcgtgtagat gcactatttt ataatacgcc agcacgctta aaatatatta aaagtttata
    34441 tacggaacta ggcaaaatta cagatattgt caaccgtatg gccatgagtc atccagacat
    34501 tcgcattgcc ttatcgaatg atgggaagaa gattttacag acgaatggtt caggacgcac
    34561 aaatgaagtg atggctgaaa tctacggcat gaaagtcgcg cgtgatttaa tccgcattga
    34621 aggagatacg agtgactatc atttaacagg atatgtcgca aaaccggaac attcaagaag
    34681 taaccgtcat tacatttcat tgttcattaa tgggcgctat attaaaaact ttttgttaaa
    34741 caaagcggta caagaaggct atcacacatt aatgatgatt ggccgttatc caatagtcta
    34801 tttaaatatt gaaatggacc cggttttagt tgatgtgaat gtgcatccga cgaaattaga
    34861 agtacggttg tcgaaagaag atcagttgtt tgatttaatt gtagcgaaaa ttcgtgaagc
    34921 gtttaaagac caattgctca ttccgaaaaa tgatttaaaa tcaaaatatg agccgaaaaa
    34981 agtgctagaa caatttgaac aacaaaaaat ggcgtttgat caaatacaag cagcacaaac
    35041 acagacatcg cattcaaaca aagaaatgac gattgacgaa gaacccgcac catacacaga
    35101 tgtaacagaa ccgtcagaca cggctaaaac accaacaaca tcagaaacaa acgatgatta
    35161 cgctgaacgt caacgtgcat tgttaaatga tatggtggag gcgccatcac ctataaatga
    35221 agtgaactcg actgacgaca gttcagacgg agcaaccgtt tctgaaatac aacaaaatca
    35281 tccacaacca tccgacaaac caaagcgacg tgtgccctac atggaagtgg taggtcaagt
    35341 tcatggcacc tatattattg cacaaaacga tgaagggatg tatttgattg accaacatgc
    35401 agcacaagag cggattaaat atgaatatta tcgagataaa attggtgaag tcaacaatga
    35461 aaaccaaagt ttgctcattc cattaacgtt taactttacg aaagatgagc aactgattat
    35521 tgagcaacac cttgacccgt tacgagaagc aggcatcttt ttagaaccat tcggcggtca
    35581 tgattacatt gtagacagtt atcctgtatg gttcccacaa gaaaacgtcg aagagatgat
    35641 taaagacatg atcgagtatg tcattcgtca taaaaaggtc gacattgcga agtttagaga
    35701 ggaagcagcg attatgatga gttgtaaaag atctattaaa gctaatcact accttaaacc
    35761 aaacgaaatg gcagacttaa tcgatcaatt aggcgaaatg caagatccgt tcacttgccc
    35821 acatggcaga ccggtcatta tcaatttttc aaattatgaa ttagagcggt tatttaaacg
    35881 gattcaataa aggagggcat catgaagcca catattttac cagccatacg atcaacaaaa
    35941 gatttagaaa agttattgaa aacagattat gaaacgtgtg tcctactcga tacgcatatc
    36001 ggacatctca atggcatcat gaaattaatt agccaatatg agttaaaacc gtttatgcat
    36061 atcgatttaa ttaaaggtat gagtcatgac gaatatgctt gtgaatatat tatccaaact
    36121 tatcgtccac gtggtattgt gtcgacaaaa acaaaagtga ttaaaaaggc aaaagcatta
    36181 ggtgttgtaa caatttttcg tgtgtttatt attgatagtc acgcattaga gcgcagtatc
    36241 gaactgattc agcggattga accggactat gtcgaagtgt tgccgggtat tgcagataaa
    36301 gtgattcaag agattcacca aaaaacaggg acacccgtta ttgcaggcgg cttaattaac
    36361 acgccagaag aagttgaaca tgctgtcagt agtggcgctg cttacattac gacaagcgat
    36421 aaatcattat ggtaaatgtt ataaaaacga gggggaattg tgatgataaa accgcagaaa
    36481 ttaaaaaaag gggatacgat tgcgattgtt tctccttcgt caggattggc tggtgaacct
    36541 caagttcgtt ggcggacgga acaagggatt gagaatattc aaacactcgg ttatcatgtc
    36601 aaagtgatgg ataatagttt gaatggcatc gcgtggaatt ttgaacatcc gaaagaacgg
    36661 gccgaaatac ttacagcggc atttgttgat tctgaagtac aagcgatttt atgtacaatt
    36721 ggtggttatg agtcggtgcg cattattccg tttttagacg atgaagtgat acgtcaacat
    36781 cccaaaattt tcatcggtta ttccgacatt acacctcttc atttacacat gtacaaactg
    36841 gggattacct ctttttatgg accggcatta ctcactgatt ttgcagaaaa tgttgaattg
    36901 gatgcatata cagtagatca tctattttcg gcgataggcg acacacaacc gattggcaat
    36961 attccgactt ctgatgaggt gcgcgtgttc ggattgcgtt gggaggaaga caagcgtcat
    37021 attgcacgtg aaaagatgcc taatggtgat tatatccaca ttagcggtca tggtacagtg
    37081 caaggccagc tcatcggtgg atgtttcgag tcgttagata aactgagagg cacaccctat
    37141 tttccggagc tcgaacagtt caaagggaag attttatttt tggaaacgtc agaagtgcaa
    37201 gtggacccta tgagttttga ggaaacatta cgtgcattcg gcttaatggg tatttatgat
    37261 gttgtctctg gaattgtgtt gggacgccct caaaatggtg tacatcaaga ggcgtatcat
    37321 gacaaactcc gtctcattat gaaagagttt catcaagaaa cactgcctat tataggtaat
    37381 gcaagttttg gacataacga accaaaatgt acattacctt atggcgttca agccacatta
    37441 tcagcagata cgttatcgtt aagtattgac gaagctgcgg tagtgaatta aaccttcaat
    37501 cgttgtcaca tttaaatcaa aactaaaaat aattgcgaaa gtacattgtc acagtataaa
    37561 aaatattaat aaatttgtta ataggctcta gagtgttgac aacgctttca cgtcattgta
    37621 atattatctc aagttgatat ttagctagag actaggagac ttctgctcgc gtttgaatgt
    37681 tttttcatgc ggattggagt ctctttctat ttaaagggag gaaaaaagaa tgaacgtcta
    37741 tttagccgaa tttatcggaa cagcattgct cttactcatg ggtggcggtg ttgttgcaaa
    37801 cgtcgctttg aaaaaaacaa atggtaacgg tgcagattgg attgtcatca ctgttggatg
    37861 ggggcttggt gtaactttag gcgtgtatgc tgttgggcaa atttctggcg cgcacttaaa
    37921 ccctgctgta acattagcgt tagccatgaa cggtgacttt gcatgggcac aagtaccagg
    37981 atatatcatt gcacaattaa tcgggggtgt gttcggcggg atgctcactt ggttaatgta
    38041 tttaccacat tggcgcgcaa ctgaagataa agcgacaaaa ttaggtgttt tcgctacagg
    38101 accagcttta aaaaactaca cagcaaactt tatttctgaa attatcggta cagcggtatt
    38161 aacttctggc ttattataca ttggtgccaa taaatttact gacggtttaa acccacttat
    38221 tgtaggtgcg ttgattgttg cgattggtct aagtttaggt ggtacaacgg gttatgcgat
    38281 taaccctgca cgtgacttag gtcctcgtat tgcacatgcc atcttgccaa tcactggtaa
    38341 aggcggtagc ggttggggtt atgcgattgt acctattctt ggaccaatgg taggtggtat
    38401 gttaggtgct gttctttatc gcctggcatt taaaggtatt tttgatgtat ggacaatcgt
    38461 aacattgatt gctttagttc taacattgtt attaggtgtc gctatgaata aaaaagcacc
    38521 taaagacgaa attgctaaaa tttaacgcaa tgcaacattt caaaaagatt tagaaagaat
    38581 tggaatgacg aggtttctat cgcttttcga ttattgatgg agacctggtc attcttgtgg
    38641 aattgagaaa caaccgtgtg ccttatgaga tgttaaaatg aagcatacga tgatgtgatc
    38701 aattgacaca gagccgaatg tttaaagtag gactgataac ggctaaatat ataaagaact
    38761 tttactgaaa aacacatcat gaatgacata taacaagtta ataatgacat agagatgaag
    38821 agttgagagg agacaatatt atgggaaatt acatcttatc tattgaccaa ggtacaacaa
    38881 gctcaagagc gattctattt aatgaggaag gggaaatcgt tggtgttgca caacgtgaat
    38941 ttaaacaaca tttcccaaaa tcagggtggg tagaacatga tgcgaatgaa atttggtcat
    39001 cagttttatc agtcatggcg tctgtattga ctgaaaataa tgtatctgca aatgaagtta
    39061 aagggatcgg tattacgaac caacgtgaaa caacggtagt ttgggataaa gaaacaggtc
    39121 gtccgattta taacgcaatc gtatggcaat ctcgtcaaac acaatcgatt tgtgacgctt
    39181 taaaacagga aggtcatgaa caaacattta gagataaaac aggtttacta cttgatccat
    39241 acttctcagg tacaaaagta aaatggattc ttgacaaagt tgacggtgcc cgtgaaaaag
    39301 ctgcaaaagg cgaaatctta ttcggtacaa tcgatacttg gcttgtttgg aagttatcag
    39361 gtggtcgtgc gcatgtaaca gactattcta atgcgagtcg tacgttaatg tacaacatcc
    39421 atgaattaaa atgggatgac gaattacttg aattgttaga tgttcctaaa gcgatgttac
    39481 ctgaagtgaa accatcaagt gaagtttatt gtgaaacgat tgattatcac ttcttcggtc
    39541 aaaacgtacc gattgcaggt attgctggtg accaacaagc cgcattattc ggccaagcat
    39601 gttttgaacg tggtgacgtg aaaaacactt atggtacagg tggctttatg ttaatgaaca
    39661 caggtgaaga agcggttaaa tctggtaacg gtttattaac aacgattgct tacggtatcg
    39721 atggtaaagt gaactatgcg cttgaaggtt caattttcgt gtcaggttct gctattcaat
    39781 ggttaagaga tggtctccgt atgattaact cagcaccaca atctgaagac tacgcaatac
    39841 gtgttgattc aacggaaggt gtatatgtcg tgccagcatt tgttggttta ggtacaccat
    39901 attgggattc tgacgcacgt ggcgctattt tcggtttaac acgtggtact gaaaaagaac
    39961 actttatccg tgcaacatta gaatcattat gttatcaaac acgtgacgtt atcgaagcga
    40021 tggcacaaga ctcaggcatc gaagtgaata gtttacgtgt tgacggtggc gcagtgaaaa
    40081 acaatttctt aatgcagttc caatcagact tattaaacat tgaagttgag cgtccagaaa
    40141 tcaatgaaac gacagcactt ggcgcagctt atttggcagg tattgcaaca ggcttctgga
    40201 aggataaatc tgaaattcaa agacgttgga aattagaaaa atcattcgaa ccagaaatgg
    40261 atcaaaaaga aagcaaccgt ctatacaaag gttggaaaaa agcagtagaa gcaacgcaag
    40321 tttttaaatt agacgaagaa taagtcgtgt gatatacttg agttaagtta ataacttcac
    40381 gcgagatagt gagagacttt gttcgtacaa cttgatgaaa gtatgtaggc ggagtctctc
    40441 ttttttatga aattaggagg cgaaagtata tgagattatc aactttgaaa agagatacgg
    40501 ttaaaaaacg tatgcaaaat gaagcgtatg acctgatcgt tgtcgggggc ggcattacag
    40561 gtgcaggaat cgctttagac gcaactgcta gaggtatgaa agttgcatta gtggaaatgc
    40621 aagactttgc acaagggaca agttcccgtt caacaaaatt agtacatggt ggacttcgtt
    40681 atttaaaaca attgcaagtc ggcgtagtag ctgaaacagg taaagaacgt gcgattgtat
    40741 atgaaaatgg accacacgta acgacacctg aatggatgtt attgccaatg cataaaggtg
    40801 gtactttcgg taagttctca acttctattg gtttagcaat gtatgaccgt ttagctggtg
    40861 ttaaaaaatc tgaacgtaaa aaaatgttaa gtaaaaaaga aacttctgct aaagaaccac
    40921 ttgtaaaaca agacggctta aaaggtggcg gttactatgt ggaataccgt actgacgatg
    40981 cacgtttaac aattgaagta atgaaaaaag cggcagaaca aggcgctgac attatgaact
    41041 acgcgaaagt gacaaacttc ttatatgaca ataaagaaaa agtaaatggt gttgctgtcg
    41101 tggatcgact tggtaacgaa acattcgaaa ttaaaggtaa aaaagtcgtt aacgctacag
    41161 gcccttgggt agacgaagtg cgcagtgcag actactctaa aaacaacaaa caattacgtt
    41221 taactaaagg ggttcatgtt gttatcgatc aatctaaatt cccattacgt caagcagtgt
    41281 actttgatac agaaaaagac ggtcgtatga tttttgcgat tccacgtgaa ggtaaagcat
    41341 atgtcggaac aactgacaca ttctacaaca acgacaaatc aaaaccactt gttaaccaag
    41401 aagaccgtga ttatttagtg gatgcgatta actacatgtt cccaacagtt catattacag
    41461 atgcagatat cgaatcaaca tgggctggtg tacgaccact tatttttgaa gaaggtaaag
    41521 acccttcaga aatttcacgt aaagacgaaa tctgggaagg taaatcaggc ttacttacaa
    41581 ttgcaggtgg taagttaaca ggttaccgtc acatggcgct tgaaattgta gatttagttg
    41641 aaaaacgtct taaacaagaa tataaattaa aatttaaaga agttgacacg aaacatatcc
    41701 caatttctgg tggtgatgta ggtggtagcg caaacttcga acaatttatt gaagataaag
    41761 tggcagcagc aaaagcgatg aacttagata cagatttagc acgtcgtctt gctacaaaat
    41821 atggttcaaa cgtagatgac ttattcgcaa ttgcacaagc agcacaacat caaaacacag
    41881 gtttaccatt agaactttat gttgaactag tctatggtgt acaaaacgaa ttagttgtta
    41941 aaccaactga ctttttagta cgtcgtatcg gcgcattata cttcgatatc gatacagtac
    42001 ttcgccataa agacactgtt gttgatgtat tggctgactt acttggttac gatgctaacg
    42061 ttaaagctgt gtacaaacaa gaattagaag aagcaattca agaagcaaga catggtcaac
    42121 atcaaccagc tgaaaaataa ttgaaaatca aataaaaaag cgtctgaggt gggatgatca
    42181 tcttaggcgc tttttctgta aaaacaaaag aaaacggtcg atatgataaa catcaaccgt
    42241 tgttctatat tgaatactct taagatagta atgactttct tatgcgagcg aagaaatgaa
    42301 tgaaaagttg aagtggaaca gacttgtaca tctcttccta atttgtgctt gatgcatcaa
    42361 aatatgtaaa atgatgccct cacatcaatt acacatcgtg agtcaagcct gctccacttc
    42421 gattaacatg ttttagttag taccttctaa aaacgtacta atcgcatgtt tgtaaattaa
    42481 atgatgacgc ccctgagaga gtatatcaat tacatattgg tcaaaatcaa caattgtacc
    42541 gcgtaattgg aaaccattcg ttaaaaatac cgtcagttct ttaccctcat ttttaaattt
    42601 ttctaggtac tcatcttgaa tgttacgttt ctcaatcatg ttcatttctc cttttattta
    42661 ttaggggttt aagctcagat aacattgaag taagtgacat cttctctcta tataaccaat
    42721 gaacattaag tttatttgta aaccaagtca tttgtctttt tgcgtaatta cgagaatgct
    42781 gtttcaataa ggtgattgct tcatctaatg gcatttcatt tttaatcacc ggtattattt
    42841 ctttataacc gatcgcttgc atactttgac acgattcata acctaattca ataagttctt
    42901 gcacttcatc caataaacca tgagacaaca tcatgtctac gcgactattt attctggaat
    42961 ataaggtgtc acgcgacatt tttatcccta ctaataatgt atcataattt tcagtcaatt
    43021 gggtactttt cttgcgatta cttaaaactt tttttgtact taagtaatat gaaatggcac
    43081 gttccactct tttacggtta ttcggatgga tttctcgctg tgaaattgga tcaaaagtgc
    43141 ctagatagtc atgtatggct tcatttgtgt atgatttcaa ttttgccatt tgttcagcaa
    43201 cacgctgttc agtttcagga gaaatcgttt caccatcaaa ctgataatcg taaatcacgg
    43261 actgaatata caaccctgta ccacctacaa tgattggtac tttaccacgc gttgtaatgt
    43321 ccgtgattaa ctgttgtgct tgttgttgaa aatcatatgc tgaatacgtt tcatctggtt
    43381 ttaaaatatc aatgagatgg tgggggatac cgtccatttc atccggagtt actttggcag
    43441 ttccgatatc catgccttga taaacttgca ttgagtcccc gctaatcact tcaccatcga
    43501 tagctttagc gagtgcgaca ccgagttccg ttttgccact ggcggttgga cctacaatgg
    43561 caacgataaa gggtttattt tgtgacaccc cgttcaccta ctttttgctt tttaataatt
    43621 tgtcgactca tccagtctaa catatgtcgc catacagttt ctttatcttt ttcaaataaa
    43681 acttcatgtc ttttattttt gtaaagttgt accgtaatat gatggatacc gcctcttttt
    43741 aaaattttgc cgaaacgacg aatgcctttc ccatttgcgc caaacggatc atctttgcca
    43801 gaaatgagta aaattggtaa ttcgagattc atatccgcaa tatttttcac acgtgacgtc
    43861 cgcatcatcg tttgaagtac actaaaaata agttgattag aaacaagaaa accagtatgt
    43921 ggatcttgaa tgaaatgatc gacttctgac ttatcagaac tgagccaatc acttgtcgta
    43981 cgtgtcggtt tgaaattttt attaaagcgt ccagtcgtca tctgattgag ccagttcatt
    44041 cgacgcttct taccacagac gagcgtaatg attttcagta aaggtaagtt ggtgatataa
    44101 taccacgttg gaaaatagcc tgtaccactt aaaataaggc cttgtgcggc ttgcggatat
    44161 gtttgtacaa attgtcgtgc aatgatagag cccatcgaat gcccaattaa aattagaggt
    44221 agatgaggat tgaattgggc tttcaacgta ctttgaattt caaaagcatc ttgaacgact
    44281 tgtgtcattg aatcaaaatg accgcgaata ccatcgacat cacagccatg ccctcgatga
    44341 ttgtgacgaa tgacatggta gccttgttga tttaacttat caactaatgt cacgtagcga
    44401 tccatatgtt cagccatgcc gtgaaaaata tgtacgatac caactgcttc ataatcagtc
    44461 cgatccactt tcgcttcaat catcgtccca tcagtcactg caattttcat agcttctgat
    44521 tttaccattt ttttcacctc tctagttcaa atcacttact tcaactttac cacatctatc
    44581 agtttgaaac acattaaaac acacttgcaa tatataactt catgaacgaa ataataatat
    44641 acaatataat gaaactatca taagaaatag aggggttcag taggcaatat catgcagttg
    44701 taaatgggta taaattttta tattaaccat tgacaataag agagtagggc accaataata
    44761 aaaactaaag gggcgatggt gaggcaaaca ttagcacgac atattttaca tagagcgagt
    44821 gtcattgaat gtccggttac taacattcat cttcaaaagg ggttatattt tacgataggg
    44881 ttcacattgc aacatgatcg gaaacttact agagattgat tcaaacaaaa tgaaatacaa
    44941 gtgtggctgt atagtcctat tgtgccaaat gtttatgcat aataggaagc atatcgcaaa
    45001 agaatgatta cagacgaagg agaactatgt gaagtattga aaactgaccg catcaatagg
    45061 ataatcgacg ttttaattca agtggatcca tttaaacttg tgaaaatcag tcaacaacat
    45121 cccttttcgt aacaacttga aagcgaaata ataatcaacg ttcggtatac caattttccg
    45181 atattgagaa agtttttagt acagatacat gtatcaaaca ttaaaaaaca tcactgcttt
    45241 caacgtacat aacatgaaag cgtgatgttt tcttctgtct ataataaatg ctcgatatct
    45301 tgctttaaat gttctggtgt tttttgtggt gaaaagcgtt taacgacttg accgtcacga
    45361 tcgactaaaa acttagtaaa attccattta attttgtcgc cgaagatgcc agacttttgc
    45421 gatttaagat agttataaag tggatgagca ttgtcgccgt tcacttcgat tttttcatgc
    45481 atcggaaatg tcacgccata gttcaattgg caattcgtcg ctgcttcttt accactacca
    45541 ggttcttgct taccgaactg attacttgga aaacctaaaa ttgtaaatcc tttgtcacga
    45601 taagtatcat aaagtttttg taatccttca aattgtggtg tcaatccaca ttcgcttgct
    45661 gtattcacaa tgagtaggac atcaccttta tattgtgaga gtgggtatgt agaaccatca
    45721 atttttggga cttctatatc atataaatgc atcgtcttca cctctaaatc taatatagca
    45781 caattagcac gtatagtctt aattcacaca ctatgataga atacgtgaag atatgtcaaa
    45841 tagaaaacgg tgataatatg cggaaaacgg aacttcactc tactgaaaaa ataaaagaaa
    45901 cggcggtact gatcggtgtt gatttgtatc agtcgcatta tgattttgaa agtacgatga
    45961 atgaattgaa tgcgttagct tatacgtgta atttagatgt tcaagggcaa tggatacagc
    46021 agaaaaatca agtggaccat aaatattatg tcggtagtgg taagttagca gagattcaag
    46081 atttcattga atttcatgat attgatgtga tcgtagcaaa tgatgaattg acaacagcac
    46141 agtcaaaaaa tttaaatgcg cgactcggtg tgaaaatcat tgatcgaaca caacttattc
    46201 ttgaaatttt tgcgttaaga gcgaaaagta aagaagggaa gctccaagtc gaatatgccc
    46261 aactagacta tttgttacca cgcttaacag ggcatggtaa aagcttatcc cgtctcggtg
    46321 ggggcatcgg gacgcgtggt ccaggtgaaa cgaaactcga aacagatcgt cgtcatattc
    46381 gaacacggat gaatgaaatt aagcgtaaat tagcagaagt ggaagctcat cgagagcgtt
    46441 atcgtaacca gcgcgaacaa aatcgagtgt ttcaagtcgc gctcatcggc tacacaaacg
    46501 caggaaaatc atcatggttt aatacgttaa cagcagctga cacgtacgaa caagatttac
    46561 tctttgcgac actcgacccc aaatcacgtc aacttaaaat taatgatgga tttgagatgg
    46621 tcatttcaga tacagtcggt tttattcaaa agctaccgac gacgttgatt gaagcattta
    46681 agtcgacatt agaagaagcg cgacaagcag atttgctcat tcatgtcgtt gatgcgagtc
    46741 atgcagaata taaaattcaa tacgatacag tgaatgaaat cgtacaagag cttgatatgc
    46801 aagatatccc tcaagtcgtc atctttaata aaaaagactt atttacaggt acaaccacgc
    46861 ctgtcacaca gtatccatct gtatttgtct catcaaaaaa tgaagcagat attgaaaaag
    46921 tgaaaaactt actctttcaa gcgattcaaa aacaatttga cttttataca gcacaattgc
    46981 caagctcagc agcggaccaa ttgtatcatc ttaaacaaca tacgttagtc acaaaattag
    47041 attacgatga agcaacagat caatatcaca ttgaaggtta tcaaaaataa tagaaagaag
    47101 cggaatcatg acacaattaa ccaaacttat tgaagaagtc gaaacaactt tagcccctta
    47161 ttttaaagat atcgaaacac gtgcatttga aaatcaagcg cgtgtcttag atgcttttca
    47221 taaagtcaaa ataacggaag ccgatcttgt tgggtctaca ggatatggct atgacgatta
    47281 tggacgtgac catttagaag cggtgtatgc tgagactttt aaagctgaag atgccctcgt
    47341 acgtccacag ctcatttcag ggacacatgc gattactgtg gctttacaaa gtacgcttaa
    47401 accaggtgac agtttgatgt acattacagg aagcccttac gatacgttat tagaagtgat
    47461 tggtatcaat ggtaacggtg ttgaaagctt aaaagaatat gacattcact atcaggaggt
    47521 ctcattaaaa gcaggtcata ttgatgtgga acgggtttta gagactattg atgacactac
    47581 gaaagtgatc gcgattcaac gttcaaaagg gtacgatcag cgtccgtcga ttaatgttga
    47641 tgaaatcggt gatgccattc gacagatcaa agcgcaatat cctgaaatga ttgtatttgt
    47701 agataactgt tacggtgaat ttgtcgagac gaaagaaccg attgaagtcg gcgcagattt
    47761 aatggctggg tcactcatta aaaatcctgg cggcggtcta gcaaaaatag ggggttatat
    47821 cgtcgggcgt cgcgatctag tcgaacgttg tggttatcgt ttaactgctc cgggtatcgg
    47881 taaagaagca ggtgcctcac tgtatgcatt gcaagagatg taccaaggct ttttcttaag
    47941 tccgcatgtc gtgagtcaaa gtttaaaagg ggcattattt acaagtttat tgttggaacg
    48001 attgaatatg cgtacatccc cacgctatga tgtgaagcga acagatttaa ttcaaaccgt
    48061 ttcatttgat acaaaagaac aaatgattca attttgccaa agcattcaac acgcatcacc
    48121 tattaatgcc cactttagtc cagaaccaag ctatatgccg ggttacgaag atgatgtcat
    48181 tatggcagcg gggactttca tacaaggttc ttcaattgaa ttatctgctg atggaccgat
    48241 tcgcccgcca tatgaagcat acgtacaagg tggcttaaca tatgaacatg taaaaattgc
    48301 cgttacgcgt gccgttgaaa aattaattaa agtcggtctc atcaaattaa aataggtata
    48361 ttttacactt ttgctagaat tgacacatca aaatcgaggt ctgaattgtc agaaatgttg
    48421 tgatttcggg ctttgaaaca ctcatgtcag gttttctgac acatttttga aatgtccatt
    48481 cgggtatgct atggttatat caagttcaaa aagtcaagga gatgtaggag atggataacg
    48541 atacaattcg ccgcaacatg cctgtatttc cgatgagtgt tgtcagtcgt ttaacggaac
    48601 tgtccgcgcg acaaattcgt tattatgaaa cacatgaact tgtaatacct tcgcgcacag
    48661 aggggaacaa acggcttttt tctttgaatg atttagaaac gttactttca atcaagcatt
    48721 tattagaaaa agggtttaat atgaaagcca tcaaagaaat catgttagag gatagccaaa
    48781 aaacgcttaa tgatgaagaa gagcggttaa gaaagcaaat actcgtagat acgacgcaaa
    48841 aaccgcaacg tgattcgata ccattgaatc gtggagattt atcgcgcttt tttaaataac
    48901 tgatactgga ggacattttt caatgccaaa acaacacttt actaaagatg atattagacg
    48961 ctttgccaaa gaagaaaatg tacgctattt acgtttacaa ttcactgata ttttaggaac
    49021 aattaaaaac gtggaagtac cagtaagcca attagaaaaa gttttagaca acgaaatgat
    49081 gtttgacggt tcttcaattg aaggtttcgt acgtattgaa gaatcagaca tgtacttata
    49141 tccagacctt gacacttggg tgattttccc atggacagct ggacaaggga aagtcgcacg
    49201 cttaatttgt gacgtttata caacagatca tcaaccattt tcaggtgacc ctcgtagtaa
    49261 cttgaagcgt gtattaaaag aaatggaatc attaggttat acagatttca acttaggacc
    49321 tgaaccagaa tttttcttat ttaagttaga tgaaaaaggc gaaccaacaa tggaattaaa
    49381 cgatcacggt ggttatttcg acttagcccc aacagattta ggtgaaaact gtcgtcgtga
    49441 catcgtgtta gaattagaag atatgggctt tgacatcgaa gcttctcacc acgaagtagc
    49501 accaggtcaa cacgagattg actttaaata tgcagacgcg attacagcat gtgacaacat
    49561 tcagactttc aaattagtcg taaaaacaat tgcacgtaaa cataacttac atgcaacatt
    49621 tatgccaaaa ccattattcg gtgtaaacgg aagcggaatg cacttcaacg tttcattatt
    49681 caaaggtaaa gaaaatgcct tctacgatga aaaaggcgac atgcaattaa ctgaagatgc
    49741 atgccacttc atcgcaggta ttatgaaaca tgcacgtggt tacacagcag tatgtaaccc
    49801 acttgttaac tcatacaaac gtttagtacc tggttatgaa gcaccaagtt atatcgcttg
    49861 gagtggtaaa aaccgttcac cattagtacg tgtaccaagc tctcgtggct tatctacacg
    49921 tgtagaaatc cgctcagttg acccagcagc aaacccatac atggcattag caacaatctt
    49981 acaagcaggt cttgacggta ttaaaaacaa attagaagta ccagaaccag ttaaccaaaa
    50041 catctatgaa atgaatcgtg aagaacgtga agcagtaggt attgaagact taccatcaac
    50101 actttacaca gcattaaaag caatgcgtga aaacccaatc gtaaaagacg cactaggtga
    50161 acacatctat aaccagttca tcaactcaaa atctattgaa tgggactact atagaacgca
    50221 agtaagtgaa tgggaagtag agcagtatat gaagcagtat taatacgtag aaccctcgag
    50281 gctattggct ttgagggttt ttcatttgca ccagtttctg ctttttatgt gaattgggtg
    50341 caaagtgggt acagacttat ccaaaaaggt tgctgtcatt aataaatttt tcaaagttct
    50401 cttttgcctt atgattcatt ttttcagtca catgactata cacttgctcg gtgactgcca
    50461 tcgttttatg tccgagccgt tcttgaataa ctttcattgg gacatcactt tctaacaaca
    50521 gcgtcgcatg cgtatgtctt aacttgtgaa tgctcaactt gttttctttt cctaataatt
    50581 tgccggtcac atgcatcatg gtattgtgtg ttgtacttcg tggaagcggg tcaccaaatg
    50641 cattacagaa tataaagtca tgagttgtat tataaacatc ttcattaacg attcgattcg
    50701 cattttgaag gtatttcaat ttagttaatg ctttcgctaa atcatcagta atataaatcg
    50761 ttctatgttc tttgtttttc gttgtattcc atcggtcgtg cttttggtca taagatttgg
    50821 tgatagataa tgttttatct ttactattgt aatcagacca ttgcagcgca ttagcttcat
    50881 caactcgtat tgcagtttca atcattgttc taaacatata gtattggtgt atgtctcttt
    50941 tcttaaccat ttctaaaaac ggtttgattt gttctttagg caaatattgc gctttttgtg
    51001 gctcacttaa atctttgtgt ttgagttcaa tgccgtcaca cggattaaag tgaattaagc
    51061 gatcatacac agctctttgt aacgctcgtt ttagaaatga atgcgttttt ttgataggga
    51121 tatccccgta aaattacagt actcacattt tgggaaactt ttcattttct atcgtacttt
    51181 caattaactt atcaatgcgc caaattttaa ataataatct aacccttcat caaggtgata
    51241 atttttattc tcttgtatgc ctttgtttaa tgaattttca atttcgataa catcagaatt
    51301 attttgaacg actaattaca gtgtactaaa agaaaatcga aaggaatcac aaaagacaag
    51361 gtgaaacagc agacacaggt aaaggatacg tgtaataaag atacattaca aaaagtgaaa
    51421 gaggtgttga ataaatgaat ataagaaaag ctaaagttag acaagaagaa tttgaattca
    51481 ttctttaagt tgacgctgaa atggtgaaga gata
//
LOCUS       DANHOL010000002        41985 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.002, whole genome shotgun sequence.
ACCESSION   DANHOL010000002 DANHOL010000000
VERSION     DANHOL010000002.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 41985)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 41985)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..41985
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.002"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            38..2212
                     /locus_tag="PTC08_000044"
     CDS             38..2212
                     /locus_tag="PTC08_000044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-glycerol:glycerophosphate
                     glycerophosphotransferase"
                     /protein_id="HDK5681583.1"
                     /translation="MNNLLTVIIPTFNAESYIEETIKSLKKQTYPYFNLIIINDGSTD
                     RTDSKLQSALEMYGKEVEYIKLNQNLGHAYARNAGISKVRTPYFMFLDADDTLMPYTV
                     ETYMNYVSQSDLVFSKIDNFTLNLPIQNLDSALVIEQGDVRGNEALILKQHSASNFVF
                     RTDIVKQFDIAFDTTLTHYADWPFLIDYLKHISTYTLMQGLPFYQRGEVYDPFLKQPF
                     SNHSFTDFFPEYVRAFKVALERSFNGNIQQFLLNHMLTTIRKEMDPSHKNVQQRYIQT
                     QHLLSDVASILRPLIKKDKSLLLKIEMLLLGRKLYKLAWKTNQFRYFIRLMKSILLRR
                     PHYHLAKYRLFNSPKSVQNNTIVFESFGGKNYSDSPKYVYEYMKKTYPQLNYYWIFKD
                     INDTTIPNDIQKIQKGSSDYYKIFKKARVWVSNSRLPLYLEKKPNQTYIQTWHGTPLK
                     RLANDMKQVRLPETTTELYKRNFYAATRRWDYLISPNPYSTEIFQSAFWMAPNKILET
                     GYPRNDILVNHANDTILLQSIKEELNIPKDKKVLLYAPTWRDDEYKEAGHYTFDLPFD
                     LQQFYEQFGDTHVILLRMHYFISNQLSLKDYEDFAIDVSNYNDISRLYLISDCLITDY
                     SSVMFDYGILKRPQLFFPYDIEKYATELRGFYIDYHNDLPGPIYTDPDALIEGLKNIE
                     LIRETYQDQIEAFHQRFCSMENGRAAQYIGDMIYNEIQKSSD"
     gene            complement(2786..3475)
                     /locus_tag="PTC08_000045"
     CDS             complement(2786..3475)
                     /locus_tag="PTC08_000045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HDK5681584.1"
                     /translation="MIKLEHITVQYKEVTALDDVSLAVGPHEIVGIVGESGSGKSTLA
                     HVMLGELRAQRGQVTSTFQRVLPILQHASYAFNPKMTIARALNEALAYEASQRQAHQH
                     YRDELMASMGLSHELMKRYPNALSGGQLQRFNVIRTLMLQPDLLICDEITANLDVIAE
                     HRMAQQLKRHVERTHCAMVVISHDLAFLQKWVSRIVVMYQGRVVDAFPIEALFDEARD
                     DYTKALLSIYE"
     gene            complement(3468..4244)
                     /locus_tag="PTC08_000046"
     CDS             complement(3468..4244)
                     /locus_tag="PTC08_000046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDK5681585.1"
                     /translation="MNKLLNLNNLTVRQGERHVIESLDMNLYASKVNVLIGESGAGKS
                     ILIKALLGALPEHFEMTYDEWHYQGQRVTSLKPYLGKQVGYISQDYTHSFNDHTPIGK
                     QLIGIYRQHYKVSRQEAAHQVQKALQWVGLDHLDLRKRYRFMLSGGQLERVLIASVMM
                     LEPTLIIADEPTAALDAVTGQQIMTLLHHLAEAHDVTLWVVTHNLTHVKRFSDYLYVL
                     QHGRIVDHGDDIYFKSANIHPYSALLFEHRSQLKQGESYD"
     gene            complement(4237..5061)
                     /locus_tag="PTC08_000047"
     CDS             complement(4237..5061)
                     /locus_tag="PTC08_000047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDK5681586.1"
                     /translation="MMKQLRQLPKMVWVCALYVVVLIIAQFSVSMQAALEVKLSDQFL
                     PISSMHWLGTDDYGRDLFARLIIGARYTLLVSLVTIVMTVVIGVPIGMIAGFLKGKVE
                     KTIMRIVDIGLSIPEFVLIIAMASLLKPSIWNIVWAMVLLRWMTYTRLTRTIVASIRH
                     MDYIRMAKLYRVPTYRMMLHHFVPHVLPSILVVATVDFGKNILYISSLSFLGLGAQPP
                     SPEWGAMLNAGRDFMTSNPILLFAPAVMIAVTILIFQLTGDALRDHFTQEEHRGHE"
     gene            complement(5058..6044)
                     /locus_tag="PTC08_000048"
     CDS             complement(5058..6044)
                     /locus_tag="PTC08_000048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDK5681587.1"
                     /translation="MQIKRFVRAFVKMIIILWVLSTITFILMKSTPGDPVNQILHVGE
                     SNISQSTIEATRAQYGLNDAWFVQYFRWIGQIVQFDFGTSYQTGRPVLQEIVFYAPPT
                     ITIAFFTIIMVMVTALPLGVVAARHPNGKLDRIIRAVTSVTVSIPSFFLGIILLHIFA
                     LHFKILPVSGFGSPAQLVLPVIAMSIGMSAYYVRLMRANVMDLYRSREVTASRLRGLS
                     ERYIFMTDILKPALVPVVTILGLSIGSLIGGTVVIENVFGIPGIGRFLVDSIRARDYP
                     VIQGIVLMLGIIVVLSNLMSDTIVLFLDPKQRYLKTDKGDAHMSTSTYEVSQ"
     gene            complement(6034..7530)
                     /locus_tag="PTC08_000049"
     CDS             complement(6034..7530)
                     /locus_tag="PTC08_000049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDK5681588.1"
                     /translation="MKLKYSLAVLTTTSLLLASCGTESGDRNADEKVLDIEMPLKTTS
                     IAPYETDVPVRAGALESLFKVSKEGEVQPWLAKDFKQVSSEKLELTVKDDVKFQNGEK
                     LTGQKVKESLEQALKESDFVKSTLPIKSIEAVGQKVTITTKEAYPELASELANPYVAI
                     FDADAKTDIDAKPVGTGPYQIKDYQRAQKITLDRNDNYWHGKPKLDGVTVTYQEDGNA
                     RVSHLQSGEADLITDVPVNRVKQLEDKGDTKVSHVSGYRTQMVIYNLHSDKMTHDVRE
                     AMDKIIDRKGLAKDVSNGYAKPATGPFNDNLDFIDNHKVKKQDIEGAKKLMEDAGYSD
                     AHPLKIQLATYEGRPELPKMAQVIQSDAKKAHIDIEIRNVDDIEGYLEDRSQWDATMY
                     SFGTIPRGDTGYFFNQAFHEDGSSNKGAYKNKEVTEMIDTLNHTVDKAQRESLSNDII
                     DKAAQDIPASYITYNDTVDGMNKDVTHFKATPEGIYLVDDKVDIQDAN"
     gene            complement(7634..8362)
                     /locus_tag="PTC08_000050"
     CDS             complement(7634..8362)
                     /locus_tag="PTC08_000050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="epoxyqueuosine reductase QueH"
                     /protein_id="HDK5681589.1"
                     /translation="MIQAEHILEKMKNQKINYDKVLRKMIVNWERENERPSILLHSCC
                     APCSTYTLEFLTEYADVSIYFANPNIHPKNEYLRRARVQEQFVHDFNERTGNNVRYIE
                     APYEPHEFMKMAKSRGLTEEPEGGARCSACFGMRLEMVAEAAVELGYDYFGSAITLSP
                     KKNAQLINEIGLDVQQLYDVKYLPSDFKKNKGYERSITMCQDYDIFRQCYCGCVFAAQ
                     QQGIDFKTINQQAKLFLEHLENKN"
     gene            complement(8549..9178)
                     /locus_tag="PTC08_000051"
     CDS             complement(8549..9178)
                     /locus_tag="PTC08_000051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDK5681590.1"
                     /translation="MEFMDVFEKWAERYDETVFNTGNDNEYEDVFDGYTVMLEGVVAL
                     SSGRVLEIGAGTGNLTQRLIHQEFDVTAIDPSEDMRTIANQKEGIHVLDGHFLNIPVD
                     AHFDTIVSTFAFHHLNHVSKREALTYLKSFLTDGGQVILVDTLFESEADKARMIETYR
                     DKGYVNLVEDLETEYYPFKDELTSIVEAVGGKAEFERLNIFAWRVRITF"
     gene            complement(9564..12398)
                     /locus_tag="PTC08_000052"
     CDS             complement(9564..12398)
                     /locus_tag="PTC08_000052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhgE/Pip domain-containing protein"
                     /protein_id="HDK5681591.1"
                     /translation="MKNAIKLFLTDIKKIAKTPGAMVLILGLAILPSFYAWFNLEATW
                     DPYSNTDGIKIAVVNEDKGDTVRNKKINVGNQIEETLRKDDHFDWQMVSREKADRELK
                     MGKYYAAIYIPEKFTHQVTGIVRKDPQQAEVEYKVNQKLNAIAPKMTDAGSSEIVRNA
                     NKKFNETVTKALLDEANRIGIKLEDQLPNYHKVRDGIYAANNALPKIEKFRKILIYLD
                     ENQDQIDQYADKFRALDQYKDDAVTATERLNQLNASIPAINERAKLIVSLNQAMPDIE
                     RVLQVASGVPNHFPEINDGVDRAIAGTDQALVKLNEIQQLLPAVEQRVNVLQNRVDRG
                     RVVNQAVGENARNATTTTPQSTRDTAYHTAAMSTTTQGDSTNVPAGHIISPADAQTMT
                     TAYGDTLQQVNQAVTQQFKATSADLDTAENLSYGILSAKDPKQFESPLNHLIARMNNA
                     TKTIRDYRDYLANIEKSEGVDFSDAQSRLKTVQEDIEQRTKRLNALKDAISAGNSGQA
                     EAADVLDSLSKAKDQLNAVGKYLRGDFTQTLRDISDRLGAALNQGATTLDNVQQRLNQ
                     LNSAIRQGQQFLTEGQQRLHQLSDTLPRVEAAYINAMKAAQAYFPQFRQKVAEASNFV
                     ENDLPRVEGRVSDATATVNEKLPEAFAQYDRLRNILDTNQPKAKETLHRLAEFARNDL
                     PQVEEDLQKADGIFKQLDKENTIEDLIDLLRNDLKKQAGVIASPVDLQKENVFPVKDY
                     GSASTPFYTALAIWVGALLLVSLLSVHNKHPELKPYLTIRETYLGKMGLFLLMNIIQA
                     TIVSIGDIVILKASIESVPLFIAISMYSALIFTTIVYTLVSVLGNPGKALAIVLLVLQ
                     IAGGGGTFPIEVTPQFFQSIHPFLPFSYSIDALREAVGGPVPQILTYKLTMLTVFGVG
                     FFLVGLIGKPYLDPLAQGLAEKAEKSDVLE"
     gene            12727..14802
                     /locus_tag="PTC08_000053"
     CDS             12727..14802
                     /locus_tag="PTC08_000053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidase domain-containing protein"
                     /protein_id="HDK5681592.1"
                     /translation="MNKKFIYTGLLSTALLIPSVTPQWAVAATPQTENGPKNPKVDNH
                     DQDVASDETRDDRKKQSQSSDKKETTKRESSKTSEKTTSQQHDSKKADLFDITSPLDS
                     QLKSSLSPHTDWFGQLFHSTLNETTDAPQHTYPAPTNDATSMPKQAQSSTPENRDFFE
                     QLQAILSGGEDSKNDTTTSTDDALSSDQATTASPSTEQRDNDQENVTPSHNTDTSNEQ
                     PSTEDATTSEKSKATSEGTSEVPPVNDDSTTEKPSTTVDAPDTEDKQTENHAPSTRDD
                     ATSDQQTKKNQNDAVIDALLDEYSEKAEQTHHAYQQQKEANEPSSTSKSPKHEAQVSD
                     PDTFKSSREQAPKQSYQNEADRKQTRQTTLFETIPDSDTSTNDAGTMRVVPQSSTREF
                     INDIAKDAHDIGQQEDLYASIMIAQAILESDSGRSELSRDPYFNLFGIKGSYHGESAH
                     FKTLESDGKQLYEIDAAFRKYPDHKASLQDYADLIKGGIDGNPNIYEDVWKSHSSSYH
                     DAASALVGTYATDPQYDQKLEALIEAYDLTRFDQDDMPDLLAEKDDNETAKSDGGAFK
                     PFAISADSPYPYGQCTWYVYNRMAQFDIHISGTMGNAADWTYSALTQGYSVSSKPKVH
                     SAVVFNPNELGADRYYGHVAFVEKVNRDGSIVISESNVKGLGVISFRTIDAKDAAQLD
                     YISGDLATE"
     gene            complement(15395..17254)
                     /locus_tag="PTC08_000054"
     CDS             complement(15395..17254)
                     /locus_tag="PTC08_000054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell wall anchor protein"
                     /protein_id="HDK5681593.1"
                     /translation="MTERKSPSSQNMRHRLVKAGTVLLLVGSGLQMPSTLSHEMTAIA
                     QTDATDDLKTLRENADKKVKALQYLNTDYKNEFLALIREYDTSSKNIEVVVDEAEAAN
                     RLAHDAQSDDEIQPELDAIDEKISALKAKVDEGQRESTEARQDVTSTETKSAESEGRE
                     PSTEGESKVKESSSAQTIVAPHHGQQDVSALKDHIKNDVDTLKQDYATQDKQVTPLQG
                     IDSAITRIDHFVSESVDHKSDNYFEEKRQHLQNFEQDIKKRTDISGTEKATLLDDAKT
                     VANQLNAQNDTILTELQQHDDKRAAVESILGEIFNAQEAAERAKQIDVKGKTDQQLAN
                     EIHQQADGLIKTSSDDLLLGMLENNSNTQGLVESILRTRFDKQEAHKIAGEIMQGKPS
                     NAAILDRLKDHFKANGKASGDDILNALINNTDADAEVIESILGGRLNAENAKLIADRV
                     QQDKKKTHQNLKAIEDELSAQANRLLTLRKQLQQIRHNTQTDMNDLFAPLRRIANILG
                     GGLNRDDIHSSGRTNDKLQQLLNRDHSLLGRGGDLFKHDFAPKPNIDPYQAINSQTAS
                     EGFLDGLFDQNGDFNLPNTGEIVKRTWLPLGILVVAIGVLILTVRFHKKTRKQ"
     gene            complement(17391..19313)
                     /locus_tag="PTC08_000055"
     CDS             complement(17391..19313)
                     /locus_tag="PTC08_000055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HDK5681594.1"
                     /translation="MKILAVTSCPNGIAHTYMAQEKLEQAAASLGIDIKVETQGGVGT
                     ENVLTAEEIAAAEGIIIAADRQVDLSRFNGKPLLKESVRAGIHQPEALIQRVVQGEVP
                     VYHSTGQAEASETSSHQSENNKNGMQMVYQHLMNGVSFMVPFIVVGGLLIALALSLGG
                     EKTATQGLVIPDDSFWKPFEKIGALAFSFMVPILAGYIAVSIADKPGLVPGMIGGAIA
                     ADGSFYGSTAGAGFLGGIVAGFLAGYIAKWIKNVKVPKAMAPIMPIIIIPIIASVLVG
                     MIFIFILGAPIAAVFESLTTWLKGMQGANIVILALIIGAMIAFDMGGPVNKVAFLFGS
                     ALIAEGNYSVMGMVAVAVCTPPIGLGLATFIQKRKFNRNEIEMGKASFTMGLFGITEG
                     AIPFAAQDPLRIIPANMIGAMVASVIAALGHVGDRVAHGGPIVAVLGGIDGVLMFIVA
                     VLVGSFVTTALVLTFKKQPTATQAISRTSISTVKANDDTDVEDMLNPQAMIQTATPMD
                     RDKAIDTIINRLVRENYVANAAVLKEAVLAREAESTTALGMHIAMPHAKTNAIRQPII
                     GVLKHDQGVQWESLDGTLPQLVFLIAVPEQSHDTHLKVLQQLSKNLMHDDKRQRLLDT
                     TNEAELYETLQRIIKA"
     gene            complement(19500..20222)
                     /locus_tag="PTC08_000056"
     CDS             complement(19500..20222)
                     /locus_tag="PTC08_000056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HDK5681595.1"
                     /translation="MSHYSTGELANMFGLTKRTIQYYDLQHILKPAYIDDNQYRMYTE
                     HEVEQLRLILVMKSLGLTLKEIKQMLSVDGTLQTVRTLVTRKVEETEAEIRQQQQQLK
                     QMKQMQQMILDSSRAPVKNLSDIEDAMKQKPQHQRLVKHMFLMGTTATLFEVIGIGLS
                     WKYRQLWPAVLGFGSAITVAPKMTHTYYQQVSYMCPNCQQQFKPPYRTWLFAPHTSQT
                     RLLTCPNCGFKGYCTEIYDTTN"
     gene            complement(20252..21217)
                     /locus_tag="PTC08_000057"
     CDS             complement(20252..21217)
                     /locus_tag="PTC08_000057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HDK5681596.1"
                     /translation="MKTYIERDGRTIQKHYLTLNGHRQGIIVESRGTAKPILLVVHGG
                     PGFPLYSFFRAHHIDLTDRYTVVFWDQRGTGMSYTRETVEMADLISDSYQLIQFLRHH
                     FQQEQVYLMCHSFGTIIGTHLAHRYPEYIAAYIGMGQLGDVFGNEQCILQHLIFLAHE
                     ERNQRAIQQLKAIHLTRDFNQDCQYEKARQRYTARYHVGFSSHGYSVWRMFRVMMQTP
                     YYRLMERINIVRGSLSTFEHLTSEMAHTNLNDIAQEITVPFYILQGVHDMQTTYEDSK
                     AFFEHVGSAEKRFYAFQDTAHAPFVDEPEKMIEIMHEIVDRHVTS"
     gene            complement(21843..22172)
                     /locus_tag="PTC08_000058"
     CDS             complement(21843..22172)
                     /locus_tag="PTC08_000058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antibiotic biosynthesis monooxygenase"
                     /protein_id="HDK5681597.1"
                     /translation="MFMAENKLTLQKGTAEATMKRFHRRQGIETIDGFIEMYVTQMNG
                     LKEYDEVKILTVWQSEAAFREWLGSDVFKASHKNVRQHHEEKESPILKNKVSTYQIGY
                     HYEKAHA"
     gene            complement(22775..24163)
                     /locus_tag="PTC08_000059"
     CDS             complement(22775..24163)
                     /locus_tag="PTC08_000059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent succinate-semialdehyde
                     dehydrogenase"
                     /protein_id="HDK5681598.1"
                     /translation="MTKFDVENPSTGEVIKTYAFTEEAEIHHKIERAYEAYLSWREVD
                     AHERSRLLWKWSTLIKENREALAELITLEGGKPYQEALGEVDYAVGYVDWYAEEVKRI
                     YGRTIPANSPDKKILVDKFPVGVVGAITPWNFPAAMITRKMAPALAAGCTIVCKPATQ
                     TPMTTIRLVELAHEAGIPEDAISYILASGKTAGKIFTEHELINKVTFTGSTPIGKKLI
                     EQSAASVKNVTMELGGLAPLIVHKDADIEHAVEQTIKTKFRNAGQTCICANRIYVHED
                     IAEEYEKQLIEQVHALKVGDGMEKDVKIGPLINQKGVDKVLDHIQDAVEHGGQLSREL
                     DDIQALGGNFLKPVVITNVNHDMKCMHEETFGPVAPVMRFADIDEAIHLANDTEFGLA
                     SYFFTNDYRTGLYIYNNLHYGVVGWNDGAPSAPHAPFGGVKESGYGREGGIEGIEPYL
                     ETKYLSIGTKTN"
     gene            24316..24666
                     /locus_tag="PTC08_000060"
     CDS             24316..24666
                     /locus_tag="PTC08_000060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkylphosphonate utilization protein"
                     /protein_id="HDK5681599.1"
                     /translation="MTTAIPNCPQCDSEYTYEDGGLYICPMCAYEWTNDTLEAAAEQA
                     VIRDANGNPLQDGDTVSVIRDLKIKGSSQMIKQGTKVKNIKLVDPEDGHDIDCKIPGF
                     GQIGLKSEVVKKIK"
     gene            complement(24733..25092)
                     /locus_tag="PTC08_000061"
     CDS             complement(24733..25092)
                     /locus_tag="PTC08_000061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS-dependent dihydroxyacetone kinase
                     phosphotransferase subunit DhaM"
                     /protein_id="HDK5681600.1"
                     /translation="MTQIVLVSHSDKIAEGTQELLAQMAQDVNVVAIGGIEGEIGTSF
                     DDISAVLNDINDDAICFFDIGSSEMNLDMAIEMYTGTHRIEKVDAPIVEGSFIAAVAL
                     STGQTIDEAIASVDEAF"
     gene            complement(25089..25670)
                     /gene="dhaL"
                     /locus_tag="PTC08_000062"
     CDS             complement(25089..25670)
                     /gene="dhaL"
                     /locus_tag="PTC08_000062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxyacetone kinase subunit L"
                     /protein_id="HDK5681601.1"
                     /translation="MDVATLKKRLLALKETFETEEEALTELDRAIGDGDHGVNMRRGF
                     EALPDQLDDSSMQALFKTTGMTLMSKVGGASGPLYGFSFVKMAQVANDEIDHDNLVEL
                     LKAFEEAVAQRGKVTLNEKTMYDVIARAREAVEQGETVDLATLQSYADATRDIEATKG
                     RASYFKKDSIGYIDPGAQSSVYILNALIGADEA"
     gene            complement(25693..26655)
                     /gene="dhaK"
                     /locus_tag="PTC08_000063"
     CDS             complement(25693..26655)
                     /gene="dhaK"
                     /locus_tag="PTC08_000063"
                     /EC_number="2.7.1.121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020361079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxyacetone kinase subunit DhaK"
                     /protein_id="HDK5681602.1"
                     /translation="MKKLIQDKTHFLQDMLDGLKITNPNIDVIADTVVVRQHKKTSGV
                     ALVSGGGSGHEPAHAGYVGEGMLDAAVCGEVFTSPTPDKVLEAIKAVDNGDGVLLIVK
                     NYAGDVMNFEMAKDMAAMEDIQVEMVVVGDDIAIDDVEKRRGVAGTVFVHKYAGYLSE
                     RGKKLTELKTEVEALIDQIRTIGMALTPPAVPTTGKYGFDIEESEMEIGIGIHGERGL
                     ERVPVEPVEQIVQRLIEQLKAEVTSDELIVMVNGMGGTPLSELDIVTKYVALQLEQEG
                     KTVKGWFVGDYMTSLDMQGFSLTFVPYDEHILSAFRAPTTSRFF"
     gene            complement(26822..27523)
                     /gene="lrgB"
                     /locus_tag="PTC08_000064"
     CDS             complement(26822..27523)
                     /gene="lrgB"
                     /locus_tag="PTC08_000064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antiholin-like protein LrgB"
                     /protein_id="HDK5681603.1"
                     /translation="MVNHLAIDTPYFGILLSVIPFLIATVLFKKTNGFFLFAPLFVAM
                     VFGVAFLHFTGIPYEKYKIGGDIINFFLGPATISFAIPLYKKRDVLVKHWHRIIGGIG
                     IGTVLALVGIFFVAKALQFGSDIIASMLPQAATTAIALPVSEGIGGIKELTSLAVILN
                     AVIIYALGNKLLKWFHIDDPIARGLSLGTSGHTLGVAAAKELGPVEESMASIAIVLVG
                     VVVVAVVPILTLIFF"
     gene            complement(27516..27950)
                     /gene="lrgA"
                     /locus_tag="PTC08_000065"
     CDS             complement(27516..27950)
                     /gene="lrgA"
                     /locus_tag="PTC08_000065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antiholin-like murein hydrolase modulator LrgA"
                     /protein_id="HDK5681604.1"
                     /translation="MKQKEEKTYSFLHQVLVIASVLFVSSIIESFMPIPMPASVIGLV
                     LLFVLLCTGVIKLGQVEKVGTALTNNIGFLFVPAGISVVNSLDIISASPILIIGLIII
                     STILLLVFTGFASQILMRMTTKDKVATPPRTKAKVKGAHSHG"
     gene            complement(28750..29484)
                     /locus_tag="PTC08_000066"
     CDS             complement(28750..29484)
                     /locus_tag="PTC08_000066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor LytR"
                     /protein_id="HDK5681605.1"
                     /translation="MRALIVDDEPLARNELIYLLNRIGGFDVLDEAENVSETIEALLV
                     NEYDLVFLDINLMNENGIELGKKIQKMKAPPAIVFATAHDQFAVQAFELNATDYIMKP
                     FDQSRIAQAVAKVRAQQEKYEDMHVPHSAVKVTQPLPIEIGERIHMLNPVDVIGISVN
                     QGVTTIYTTQGEYETHEPLSAYEKRLDEAQFIRIHRSNVINRQHIEAIEHWFNSTYMV
                     TLTDGVKMQVSRSYMKKFKQAMGLKL"
     gene            complement(29488..31239)
                     /locus_tag="PTC08_000067"
     CDS             complement(29488..31239)
                     /locus_tag="PTC08_000067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014373763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HDK5681606.1"
                     /translation="MFNLTILLLERVGLIIILAYILMNSKYFKHTMQQRQAWASKWQL
                     CIVFSLFALLSNFTGIVIKNGDILAGSIYFQLDDNVSLANTRVLTIGVAGLVGGPFVS
                     VFVGILSGIFRLYMGGAEAYTYLISSLFIGLISGYYGRQALEQHQYPTIARSALIGGM
                     MEIVQMICIFSFAQDKQYAMDLIALIGLPMIVVNSAGTAIFMSIISSTLKQEEQMRAV
                     QTHDVLELTNQTLPYFKEGLNEDSAKHVAMIIKDLMKVSAVAITNRHDILAHVGAGSD
                     HHIPKKEIITHLSKAVLQTGELKEVHTKEEIGCTHPHCPLHAALVIPLKMHGKVTGTL
                     KMYFTNPTNLTFVERQLAEGLAEIFSSQIELGEAEMQSKLLKDAEIKSLQAQVNPHFF
                     FNAMNTISALVRIDSEKARELLLELSHFFRSNLQGSRQNTITLEKELSQVTAYLSLEQ
                     ARFPGRFDVTFDVPQKVQQASVPPFLIQILVENAVKHAFPNRKKGNTIKVGARLKDAQ
                     QLYIEVSDNGRGIPPDKLTQLGQKVVESESGTGSALENLNLRLKGLFSEQAALHFDSD
                     DTGTCVWCTLPYQQKED"
     gene            complement(31714..32892)
                     /gene="deoB"
                     /locus_tag="PTC08_000068"
     CDS             complement(31714..32892)
                     /gene="deoB"
                     /locus_tag="PTC08_000068"
                     /EC_number="5.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopentomutase"
                     /protein_id="HDK5681607.1"
                     /translation="MTVPFQRVHLIVMDSVGIGEGPDAKDFNDEGSHTLKHTLEGFDQ
                     KLPNLEKLGLGNIAPLPVIDAVDHPLAYYTKLSEASVGKDTMTGHWEIMGLNIMQPFK
                     VYPEGFPEELVQEIEQLSGRKVVANRPASGTQIIDEWGEHQMKTGDLIVYTSADPVLQ
                     IAAHEDVIPLEELYDICEKVRELTKDPKYLIGRIIARPYVGEPGNFTRTSNRHDYALK
                     PFGKTVMNTLKENDYDVIAIGKINDIYDGEGVTEAVRTKSNMDGMDQLMNIVNKDFKG
                     LSFLNLVDFDALYGHRRDKPGYAQAIKEFDNRLPELMDALHEDDLLIITADHGNDPTA
                     PGTDHTREYIPVIMYSPKFKGGQALEGDTTFSSIGATIADNFGVTLPEFGRSYLNELK
                     "
     gene            complement(32926..33588)
                     /gene="deoC"
                     /locus_tag="PTC08_000069"
     CDS             complement(32926..33588)
                     /gene="deoC"
                     /locus_tag="PTC08_000069"
                     /EC_number="4.1.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribose-phosphate aldolase"
                     /protein_id="HDK5681608.1"
                     /translation="MNFEKYIDHTLLKPESTRAQIDKIIEEAKAYHFKSICINPTHIA
                     YAAEKLADSDVLVCTVIGFPLGANTTETKVFETEDAIRKGADEIDMVINIGALKDQRY
                     DDVQKDIEAVVKAAEGKTVKVIIETALLTEEEKVKASELTKAAGAHFVKTSTGFSTGG
                     ATPEDVKLMKDTVGESVEVKAAGGVRNLEDFKAMIDAGATRIGASAGVQIMQGLEVDS
                     DY"
     gene            33919..34728
                     /locus_tag="PTC08_000070"
     CDS             33919..34728
                     /locus_tag="PTC08_000070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase regulatory
                     subunit"
                     /protein_id="HDK5681609.1"
                     /translation="MGQPFIQNKQYEIDFLKLATANDFEPIETAFIETLVWDELSPDD
                     LKQMKERSVWQADDTLFALRNDFTDQLVRYYQHYQLNHSAVAYTGPIVRHHQVQTQLG
                     LECYRPHIQEMYHAFETFQQFISQHLQDEIQYVVIGHYQLIDLLLEYQAEREQLLTWV
                     EQRNISALKSALGMSHPLVRLLLTPTHQQLELLNTLYPHDHVIIRSLNRWQTYFKSLH
                     IDTIHLDITPQAPRSYYKETFIHAHLQNSGRTLSGGYYNGPLEGFGLGLTL"
     gene            34744..35358
                     /locus_tag="PTC08_000071"
     CDS             34744..35358
                     /locus_tag="PTC08_000071"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HDK5681610.1"
                     /translation="MLTIALAKGRLLKSFIAYLESQGQNDLAAQLKSRERQLQIKVSP
                     FHFLFVKGNDVPIYVEQGIADIGITGSDILNEAQYDVNQLLALPFGQCHFSVAAFDET
                     TDYRKVATSFPKTARDYFKATGRDVELIELSGSIELACVIGMVDGIVDIVQTGTTLRS
                     NGLVEKEHITDIQAQLITNRQSFFTQSSEIDAFINMLGVSLIDR"
     gene            35348..36607
                     /locus_tag="PTC08_000072"
     CDS             35348..36607
                     /locus_tag="PTC08_000072"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HDK5681611.1"
                     /translation="MIVNSQTFLQQFETTETFNPEIHAQVTAICDRVRREGDLALHDY
                     NQQFDGIKVEALEVPQADIAAAYHNIDEDLRHALEHSFRRIRDYQTQIKYENQYATPE
                     LYEVYHPIERVGIYVPGGKASYPSTVLMTATLAKVAGVKNISVVTPPQQNGVAPSVLA
                     ACHIAGVDHVYQVGGAQSIAALAYGTETIPKVDKIVGPGNQYVAYAKKALYGEVGIDQ
                     IAGPSEIALIIDDTCNLEAVVYDVFAQAEHDEMAGTFVISTDLALLESLESRIQQTLN
                     GAPRHDILKVSLKDNHYLIHATDFEDSCHVMNTIAPEHASIQTAQPENYLPHIHYVGS
                     LFLGGYAPEAIGDYIAGPSHVLPTQRTARFQHGLSVNDFLTKHTVIHLSEATYEKTYR
                     DAARIAQDEQLYHHQKSLEIRQRGDNA"
     gene            36604..37617
                     /locus_tag="PTC08_000073"
     CDS             36604..37617
                     /locus_tag="PTC08_000073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate aminotransferase family
                     protein"
                     /protein_id="HDK5681612.1"
                     /translation="MIRMNKNESPIKPLSTEALTELIEKCDYHLYPDVAYDRFRKAYA
                     QYYGNTFTREQITCGNGSDELIQKLMLIMPDGPCLTLNPDFFMYQDYARQVDRDIQFV
                     DATPELSFPVETVLDKIEAVQPSFFILSNPHNPTGHRFDESYLLAVANRMKQLGGYLV
                     IDEAYIDFSTPLDIALEDHILVMRTLSKAYAMAGLRLGVLIGTEKTIQLVRQIEHPYP
                     LSALTMAIGIQLFENQADTEAFIAHQRHLSSRLKAILQQYASPHMTIYPSETNFVLTA
                     GPQAMALGRHVEQHGFLPRFYNDPSEATMAGFVRYSIATEAQLDRFEQVVKEWSERHD
                     ISN"
     gene            37601..38182
                     /gene="hisB"
                     /locus_tag="PTC08_000074"
     CDS             37601..38182
                     /gene="hisB"
                     /locus_tag="PTC08_000074"
                     /EC_number="4.2.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazoleglycerol-phosphate dehydratase HisB"
                     /protein_id="HDK5681613.1"
                     /translation="MTYQINRETKETKIAIELSEVQETSHIDTGVGFLDHMLTLLSFH
                     SGLYFNIHVDGDTWVDDHHTTEDIGIVLGQLLLQLTRDKKHFERYGQQYLPMDETLAR
                     AVVDISGRPYLNFNASFSKEKVGQFDTELVEEFFRALVINARLTVHIDLLHQGNTHHE
                     IESVFKAFARALKQALRPSQEARIPSSKGVIES"
     gene            38179..38754
                     /gene="hisH"
                     /locus_tag="PTC08_000075"
     CDS             38179..38754
                     /gene="hisH"
                     /locus_tag="PTC08_000075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HDK5681614.1"
                     /translation="MIVIVDYGLGNILNVQRAVQHLGYDVVVSRDPAVIERAEQLILP
                     GVGHFKDAMQAIDRYELAPLLKRQQKPIIGICLGMQLLYAFSDEGHVPGLGFFEGHVR
                     AIDTPYTVPHLGWNQLKSDVPSLNKDVYYVHTYQAPMNDDVVAYTDYGTQIPGIVQRG
                     PYIGIQFHPEKSGNYGLDILAQALKGGWQHD"
     gene            38747..39451
                     /locus_tag="PTC08_000076"
     CDS             38747..39451
                     /locus_tag="PTC08_000076"
                     /EC_number="5.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-(5-phosphoribosyl)-5-((5-
                     phosphoribosylamino)methylideneamino)imidazole-4-
                     carboxamide isomerase"
                     /protein_id="HDK5681615.1"
                     /translation="MIKIWPAIDLIEGKSVRLTEGDYSTSEAMTRSAKDSIQFYNQFE
                     SVDRIHIIDLIGAKAQRAIEMDYIQQLIQASDKPIEVGGGIRDEATLRRYFDSGVDYC
                     IVGTQAITNTAWLAEMSQLFPGKIYVSVDAYRTAIKINGWTEDAALDLFDYVAQIETF
                     PLGGVIYTDISKDGKLAGPNFEITAQLAQATSLPVVASGGIRDRQDLERLEASGVTAA
                     IVGKAANQSTFWEGLS"
     gene            39448..40212
                     /gene="hisF"
                     /locus_tag="PTC08_000077"
     CDS             39448..40212
                     /gene="hisF"
                     /locus_tag="PTC08_000077"
                     /EC_number="4.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HDK5681616.1"
                     /translation="MIKKRIIPCLDVKDGRVVKGIQFKGLRDIGDPVDLAMYYNEAGA
                     DELVFLDISKTERGHALTLDIIQQTAEQLFIPLTVGGGIASLDDISDLLKHGADKVSL
                     NSAALNNPELIRQASEKFGRQCICIAIDSQYDPKLDDYFCCTHGGKKRTDKRVYDWVQ
                     EVESLGAGELLVTSMDFDGMKQGFDLKHLNGIAERVNIPIIASGGGGKARHFTELFTQ
                     TPVSAGLAASILHDKETTVHEIKQELENGGVPVRWP"
     gene            40203..40832
                     /locus_tag="PTC08_000078"
     CDS             40203..40832
                     /locus_tag="PTC08_000078"
                     /EC_number="3.5.4.19"
                     /EC_number="3.6.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008296451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphoribosyl-AMP
                     cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE"
                     /protein_id="HDK5681617.1"
                     /translation="MALKPDFSKGLLPVILQDVDTKQVLMLGYMNEEAFQKTVEEEVA
                     WFYSRSKGRLWKKGESSGHIQKVKDMYLDCDQDTLLLFVEPMGPTCHTGAQSCFGTEG
                     GFKVQQLEETVATRAQEADSGSYTQYLLNEGKEKITKKFGEEAFEVVIAAMKDDRDEL
                     IAESADVLYHLFVLLQAQDVTFAEVEALLGERHEKRNNFKGERQDIEEW"
     gene            complement(40946..41947)
                     /gene="argF"
                     /locus_tag="PTC08_000079"
     CDS             complement(40946..41947)
                     /gene="argF"
                     /locus_tag="PTC08_000079"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002508858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HDK5681618.1"
                     /translation="MKAFKGKSLLKTKDFDAEALMTLIDFSMALKHKKQHHLPHPFLK
                     GKNIALIFEKPSTRTRAAFSVAAHDLGAHVDYYEKGDIHLGVKESIADTAQVFGRMYD
                     GIEFRGYHQSDVEELSQHSGVPVWNGLTNEWHPTQMIADFMTIKEHFGALENRTLTYV
                     GDASNNVAHDLLVTGAILGVNIHIAAPENLQPHLDVQTIAHQYAEQSGGNIMITENVQ
                     QAVYHTDVLYTDVWVSMGTDESEWGTRIENMLPYQINDTLLVQADNPDLIVMHCLPAF
                     HNLETTTSQKLYDQFGLEALEITDSIFNGPNSVVFEQAENRLHAIKAIMAATLGELF"
BASE COUNT        12332 a         9287 c         7618 g        12748 t
ORIGIN      
        1 agcagtatac aaaatatatg taaaaatgag gaagtttatg aataatttat taactgttat
       61 catccctaca tttaatgctg aatcctatat agaagagaca ataaaatcac taaaaaagca
      121 aacataccca tactttaacc tcattatcat taatgacgga tcaacagatc gaaccgattc
      181 caaattacag agtgccttgg agatgtatgg taaagaggta gaatatatca aacttaatca
      241 aaatttggga catgcttatg ctagaaacgc tggtatatct aaagtacgca caccttattt
      301 catgttccta gatgctgatg acactttaat gccttataca gtagaaacat acatgaatta
      361 cgtaagtcaa tctgatctgg tattctcaaa aattgacaat tttacgttaa accttcccat
      421 tcaaaacctt gactctgcac ttgtaataga gcaaggtgat gtacgtggta atgaagcact
      481 tattttaaaa caacattctg cttctaattt cgtgtttcgc acagacatag taaaacaatt
      541 tgatatagca tttgacacaa ctttaaccca ttatgctgat tggccttttt taatcgatta
      601 cttaaagcat atttcgactt atactttaat gcaagggctc cctttttacc aacgcggtga
      661 ggtgtatgac ccttttctaa aacaaccatt ttctaatcat tctttcacgg acttttttcc
      721 ggaatatgtt cgtgcattta aagttgcgtt agaaagaagt tttaatggta atattcagca
      781 atttttgctc aatcacatgc tcacaacaat tcgcaaagag atggatccta gtcataaaaa
      841 cgtccaacag cgctatattc aaacacagca tttgttaagc gatgtagcta gtatacttcg
      901 tcctttgata aaaaaagata aatccctgct tctcaaaatt gaaatgcttt tacttggtcg
      961 aaagttgtat aaactagcat ggaaaacaaa tcagttccga tatttcattc gtcttatgaa
     1021 gtctatccta ttacgacgcc ctcattatca tcttgcaaaa tatcgattat tcaactcgcc
     1081 taaaagcgtc caaaataata cgattgtatt cgaatcattt ggcggaaaaa attatagtga
     1141 tagtcctaaa tatgtgtacg aatatatgaa gaaaacgtat cctcagctca attattactg
     1201 gattttcaag gatataaacg atacaactat tccaaatgat atacaaaaaa ttcaaaaagg
     1261 aagctcagat tattataaaa ttttcaaaaa agcgcgtgta tgggtttcta actctagact
     1321 tccactatat ctagaaaaaa agccaaatca aacatatatt caaacgtggc atggcactcc
     1381 tctgaaacga ctcgccaatg atatgaaaca agtgcgtcta cctgaaacta caacagaact
     1441 atataagagg aatttttatg ctgcgactcg tcgttgggat tatttgattt cacccaatcc
     1501 atattctact gaaatctttc aatctgcatt ctggatggca ccgaataaaa ttttagagac
     1561 agggtatcca cgtaacgata ttttagtgaa tcatgcgaat gatactatac ttctacaaag
     1621 tatcaaggaa gagcttaaca ttcctaaaga taaaaaagtg ttattgtacg caccaacttg
     1681 gcgtgacgat gaatataaag aagcaggtca ctacacgttc gatttgcctt ttgacctaca
     1741 acaattttat gaacaatttg gagatacaca cgttatttta ttaagaatgc attactttat
     1801 ttcgaatcaa ttgtcactta aagactacga agattttgcg attgatgtat cgaattataa
     1861 tgatatttca agactatatt taattagtga ctgtttgatt acggattact cttcagtcat
     1921 gtttgattat ggtattttga agcgtccgca actgttcttt ccttatgata ttgaaaaata
     1981 tgcgacggaa ttacgtggct tttatatcga ctatcataat gacctgccag gccctattta
     2041 tacagatcca gatgcattaa ttgaaggatt gaaaaatatt gaactgattc gcgaaacata
     2101 tcaagaccag attgaagcct ttcaccaacg tttttgttcg atggaaaatg ggcgtgcggc
     2161 tcaatatatt ggtgacatga tatacaatga gattcagaaa agttcagatt aataaagttc
     2221 ccacattgat aataataaac aattgctatt ttgggctcgc gttcctaggg gctgcccttc
     2281 aactaactaa cgcgtgattg aactgttaca ttgaaggagg cgttggtgga ttttgggagc
     2341 agtacagaaa tctcatgtgc aacaaagatt tcgtcgtatt gcccccgcaa ggctgactag
     2401 acttctcaaa aacatgcgcc ttgagaagtc agacagctac tgcgatatac aataaccact
     2461 gttaaagtta aatgacgtta ttttgctttt tacataatcc ctcaagagtc tcgccccttt
     2521 tagcaatttg acacttaagt atgatagaca atgcgggcag acttttaatt tgaagataat
     2581 caattttttt atcttttgtt aatctaagtt aaactcatgt tctcatattc taacttccac
     2641 ttataaaata caaaaagctg agatgacgtc attgtgatct cagcttcttt catgtatttc
     2701 agttttcctc ttaattcatt ttaacgacat ccaaccacgg tgaatgagtt gatcatacgt
     2761 aacgttttac ctgacgcatc gtcatctact cataaatcga caacaacgct ttcgtataat
     2821 catcgcgtgc ctcatcaaac agcgcttcta ttggaaaagc atcgacgaca cgcccttgat
     2881 acatcactac aattcgtgag acccattttt gtaaaaaggc caagtcatgg gaaatgacaa
     2941 ccatggcaca gtgtgtccgt tcgacatgtc gttttaattg ctgagccatg cgatgttctg
     3001 caatgacatc taaatttgca gtaatctcat cacaaattaa caagtctggt tgcaacatta
     3061 atgtgcgaat gacattgaaa cgttgcaatt gtcctccact caatgcattc ggataccgct
     3121 tcatcaattc atgagacaat cccatcgacg ccatcaattc atcacgataa tgttgatgtg
     3181 cttgacgctg tgatgcctca taagctaacg cctcatttaa tgcacgcgct atggtcatct
     3241 taggattaaa tgcgtaactg gcatgttgta aaatcggcag gacacgttga aatgtcgatg
     3301 tgacctgacc tcgttgggcg cgcaattcac ctaacatcac gtgcgctaat gtagattttc
     3361 cagacccact ttcaccgacg atacccacga tttcatgcgg gccgactgct aatgacacat
     3421 catctaaagc ggtcacctct ttatattgca cggtgatatg ttctaattta atcatatgat
     3481 tcaccttgtt ttaactgact tcgatgttca aataacaacg cactgtacgg atggatgttt
     3541 gctgatttga aatagatatc gtcaccatgg tccacaatac gcccatgttg caacacatac
     3601 agataatcac tgaatcgttt cacatgggtt aagttatgtg tcacgaccca taacgtcacg
     3661 tcgtgtgctt cagcaagatg atgcagtaac gtcatgattt gctgccctgt cacagcatct
     3721 aatgcggcag taggttcgtc tgcgataatg agtgtcggtt ctaacatcat gacgctcgca
     3781 atcaggacgc gttccagttg ccctcctgac agcatgaagc gataccgttt gcgcaaatcg
     3841 aggtggtcta atcccaccca ttgcaacgct ttttgaactt ggtgcgccgc ttcttgacgc
     3901 gacaccttgt aatgctgacg ataaatccca atgagctgct tcccaatcgg cgtatggtca
     3961 ttaaaactat gtgtataatc ttgtgaaata tacccgactt gtttacctaa atacggcttc
     4021 aatgacgtga ccctttgtcc ttgataatgc cattcatcgt acgtcatttc aaaatgttcc
     4081 ggtaaagcac cgagtagcgc cttaatcaat atacttttcc ccgcaccact ttcaccaatc
     4141 aagacgttca cttttgaagc ataaaggttc atatcgagac tttctatgac atgacgttca
     4201 ccttggcgta ctgttaagtt gtttaggttt aataacttat tcatgtccac gatgctcctc
     4261 ttgtgtaaaa tgatcgcgta acgcatcgcc agtcaattgg aaaattaaaa ttgtcacggc
     4321 tatcatcacg gcaggcgcaa acagcagtat cggattggaa gtcataaaat cacgacctgc
     4381 atttaacatc gcgccccatt caggtgatgg cggttgtgcc cctaatccta aaaatgatag
     4441 cgatgaaata tagagaatgt ttttcccgaa atccaccgtc gctaccacta aaatagacgg
     4501 caaaacatgt ggaacaaaat gatgtaacat catgcgatac gttggaacac gatacaattt
     4561 cgccatacga atataatcca tatgacgaat actcgccaca atcgtacggg tcaatcttgt
     4621 atacgtcatc caacgtaaca acaccatcgc ccagacgata ttccaaatac tcggtttcaa
     4681 caaacttgcc attgcaataa tgagcacaaa ttctgggata ctgagaccga tatcaacaat
     4741 gcgcatgatt gttttttcga ctttcccttt taaaaagccc gcaatcatac cgataggcac
     4801 accgataaca actgtcatga cgattgtcac caaactcacg agtagcgtat agcgtgcacc
     4861 gataataagg cgtgcgaaca agtcacgtcc atagtcatct gtccctagcc aatgcatcga
     4921 actgatcggt aaaaactggt cgctcaactt cacttctaac gcggcttgca tggaaacaga
     4981 aaattgtgca atgatgagta ccacgacgta cagcgcacat acccatacca ttttcggtaa
     5041 ttgtcgtaac tgtttcatca ttgcgacacc tcgtatgttg acgttgacat gtgtgcatca
     5101 cctttgtcag ttttcagata gcgctgtttc ggatctaaaa agaggacaat cgtgtcactc
     5161 atcaaattag acagcactac gattatacct aacatgagta caatcccttg aatgaccgga
     5221 taatctcttg cccgaatact atcgactaaa aaccgcccaa tccctggaat accgaacaca
     5281 ttttcaatga cgactgtacc accgattaag ctcccaatag aaagtcctaa aatggttaca
     5341 acagggacga gtgccggctt taaaatgtca gtcataaaaa tataacgctc cgataaacct
     5401 cttaatcgtg aggcggtcac ttcacgacta cgatataaat ccatgacatt ggcacgcatt
     5461 aaacgcacgt aatacgcact cattccgatg ctcatcgcaa tgaccggtaa caccaattgt
     5521 gcaggtgaac cgaaacctga cacgggtaaa attttaaaat gcaacgcaaa aatgtgtagt
     5581 aaaattattc ctaaaaagaa cgacggaata ctcactgtca ccgatgttac ggcgcgtatt
     5641 atccgatcaa gtttaccatt cggatgacgt gctgcgacaa cccctagagg aagcgcagtc
     5701 accatcacca tgataattgt gaagaacgca atcgtaatcg ttggcggtgc ataaaagaca
     5761 atttcttgaa ggactggacg acctgtttga taacttgtcc caaaatcgaa ctgtacaatt
     5821 tgtcctatcc aacgaaaata ttgaacaaac cacgcatcat tcaaaccata ttgtgcacgt
     5881 gttgcctcta tagtcgattg tgaaatattg gattccccaa catgcaaaat ttgattgact
     5941 gggtcgcctg gtgtactttt catcaaaata aacgtaatgg tcgacagcac ccataggatg
     6001 ataatcattt ttacgaaagc gcgcacgaaa cgcttaattt gcatcttgaa tatcaacctt
     6061 atcatcgact aaataaatgc cttctggtgt tgccttaaag tgcgtcacat ctttattcat
     6121 gccatctact gtatcgttat acgtaatgta acttgctgga atgtcttgtg cagctttatc
     6181 aataatgtca tttgagagcg actcacgttg cgctttatct acagtatgat tcaatgtgtc
     6241 gatcatttct gtcacttctt tatttttgta tgccccttta ttgcttgaac catcttcatg
     6301 gaacgcttga ttgaagaagt aacctgtatc cccacgtgga atcgtaccaa aactatacat
     6361 cgtcgcatcc cattgtgagc gatcttctaa gtagccttca atatcatcga cgttgcgaat
     6421 ttcaatatca atatgtgctt ttttggcatc agattgaatg acttgtgcca ttttaggaag
     6481 ttctgggcga ccttcatatg ttgcaagttg aattttgagt ggatgtgcat cactataacc
     6541 ggcatcttcc attaactttt ttgcaccttc aatatcttgt tttttcactt tatggttgtc
     6601 aataaagtct aaattatcat taaatggacc cgttgcaggt ttcgcataac catttgacac
     6661 atctttcgcc aaccctttac gatcaataat tttatccatg gcttctcgaa catcatgcgt
     6721 cattttgtca ctatgtaagt tgtaaatcac catttgtgta cggtagccag aaacgtgcga
     6781 cacttttgta tcacctttat cctcgagttg tttcactcga tttacaggga cgtccgtaat
     6841 taaatccgct tcacctgatt gtaaatgact gacacgtgca ttaccatctt cttgatatgt
     6901 cacagtcaca ccatcaagtt taggttttcc atgccagtaa ttatcattac gatcaagcgt
     6961 aatcttttga gcgcgttgat aatctttaat ttgataaggg cctgtaccga ctggcttcgc
     7021 atcaatgtct gtttttgcat ccgcatcgaa aatagcgacg tacggattgg cgagttcaga
     7081 agcgagctct gggtaagcct ctttcgtagt aatcgttact ttttgaccaa ccgcttcaat
     7141 agatttaatc ggtaacgttg attttacaaa atcgctctct ttcaatgctt gttctaaact
     7201 ttctttcact ttttgtcctg ttaatttttc accattttgg aactttacat catctttaac
     7261 cgttagttcc aatttttcag aagagacctg tttaaagtct ttagccaacc aaggctgtac
     7321 ttctccctct ttggatactt tgaataaaga ctctagtgcg cccgctctaa cagggacatc
     7381 tgtttcatat ggagcaatcg atgtcgtttt caaaggcatc tcaatatcta acaccttttc
     7441 gtcagcattg cggtcccccg attctgtacc acaacttgcc aacaataatg atgttgttgt
     7501 taaaacagcg agtgaatatt tcaatttcat acgataagcg ccttctttct ctataattag
     7561 cctaactcac tatcaccgct aatattatat cagaaaaatt ttcgtcatat aaaactattt
     7621 attttggtta tccttaattt ttattttcta aatgttctaa aaatagcttt gcttgttggt
     7681 taatggtttt gaaatcaata ccttgttgtt gagcagcaaa cacacagcca cagtaacatt
     7741 gacggaaaat gtcataatct tgacacatcg taattgaacg ttcatagcct ttatttttct
     7801 taaagtcact cggtaaatat ttcacatcat acaattgttg cacgtctaaa ccaatttcat
     7861 taatcaactg tgcatttttc ttcggtgata atgtaatcgc actaccaaaa taatcatagc
     7921 caagttctac cgccgcttct gccaccattt ctaaacgcat accaaaacat gccgaacatc
     7981 tcgcaccgcc ttcaggttct tctgtcaaac cacgagattt cgccattttc ataaattcat
     8041 gcggctcata tggcgcttcg atatagcgga cattgttgcc tgttctttca ttaaagtcat
     8101 gcacaaactg ctcttggaca cgtgcacgtc gcaagtattc atttttggga tgtatgttcg
     8161 gattcgcaaa ataaatggac acatccgcgt attccgttaa aaactctaac gtataggtac
     8221 tacatggtgc acaacaacta tgtaacaaaa tggaaggacg ctcattttca cgctcccaat
     8281 tgacaatcat cttacgtaaa actttgtcgt aattgatctt ttgatttttc attttttcta
     8341 aaatgtgttc cgcttgaatc ataggactcc cccacttcga attcttatct cttttcaata
     8401 aaacaaatat atcacaaaat ttcttacaat gtatggccat tttcatcaac aaaaaagcag
     8461 tcatccaaca cgacatcgga tcactgctat actgataatg cgagatatgc cacactaacc
     8521 agttcaaata ttcatattac tcaacatcct aaaacgtgat acgcacacgc catgcaaata
     8581 tattcaatcg ttcaaattca gctttgccac ccactgcttc aacaattgaa gtgagctcat
     8641 ctttaaaagg atagtattcc gtctctaaat cctcgactaa attgacatag cccttatcac
     8701 gatacgtctc aatcatgcgc gctttgtctg cctcagactc aaacaatgta tcaacgagaa
     8761 tcacttgacc cccgtctgtt aaaaatgact tcaaataagt cagcgcctct cgtttactaa
     8821 catgatttaa gtgatgaaag gcgaatgtag acacgattgt atcgaagtgt gcgtcaacag
     8881 gaatattcaa aaagtggcca tctagcacat gtatgccttc tttttgattc gcaatcgtcc
     8941 gcatgtcttc tgaaggatca atggctgtga catcgaactc ctgatggata agccgctgtg
     9001 ttaaattacc tgtgccggca ccaatctcaa gtacacgtcc cgatgataat gcaaccacgc
     9061 cctctaacat tactgtgtag ccgtcaaaca catcttcata ctcattgtca ttaccagtgt
     9121 taaataccgt ttcatcataa cgctctgccc atttttcaaa cacgtccata aactccatga
     9181 ttatcccctt ttcaattcct agtatttcga tatgtattat atactaatca acaactattg
     9241 ccaacctcaa aaagaagaaa atacaattaa ctacaaattc taaaaataaa aaagcacagt
     9301 gcaaaaggct tcacaccctt tgcactgcac ttgctataat gaaacattga cgactcaaca
     9361 aagaatcgtg ttttgaaaga tcactgtcat acaaaatctt tgttgcacat gagatttctg
     9421 tactgttccc caaatccact aacgcttctt ttataacagt tcaattaagc gttagttcgt
     9481 tgagagatcg gcgcctcgga aagcgcagca cggttcagca atcgtaatta ccaccaaaaa
     9541 ccacatgcct gatttcaaaa acattattcc aatacgtcgc tcttctcggc cttttccgct
     9601 aatccttgtg ctaatgggtc taaatacggc ttccctatca agcccactaa gaagaaacca
     9661 acaccaaata cagtaagcat cgtcaactta tacgttaaaa tttgtggcac aggtccaccc
     9721 actgcttctc tcaatgcatc aatactgtat gagaatggca agaatgggtg aatactttgg
     9781 aaaaattgtg gtgtcacttc aattgggaat gttccgccac ccccagcgat ttgtaataca
     9841 agcaagacga tagccagtgc tttacctgga tttcctaata ctgatactaa tgtatacaca
     9901 atcgttgtaa atatcagtgc agaatacata ctaatcgcaa taaaaagtgg cactgattca
     9961 atcgatgctt tcaaaatcac aatatcccca atagagacga tcgtcgcttg tatgatattc
    10021 attaataaga aaagtcccat tttacctaga tatgtttcgc gaatggtcaa atatggtttt
    10081 aactctggat gcttattgtg cactgacaac aagctgacaa gtaacaatgc gccgacccaa
    10141 attgccaatg ccgtatagaa tggtgtactc gctgaaccat aatctttaac tgggaaaaca
    10201 ttctcttttt gtagatcgac tggactggca atgacaccgg cttgtttttt caggtcattc
    10261 cgcaataagt caattaaatc ttctatcgta ttctctttat cgagttgttt aaaaataccg
    10321 tctgcctttt gcaaatcttc ttcaacttgc ggcaaatcat ttcttgcaaa ttctgccaaa
    10381 cgatgtaatg tttctttcgc ttttggttga tttgtatcta aaatattgcg caaacggtca
    10441 tattgtgcga atgcttctgg taatttttca ttcactgtgg cagtcgcatc agaaactcgt
    10501 ccttccactc ttggtaagtc attttctaca aagttggatg cttcagcgac cttttgacga
    10561 aattgtggaa agtaagcttg ggctgctttc atcgcattaa tatatgctgc ttccacgcga
    10621 ggtaacgtat cacttaattg gtgtaagcgt tgttgccctt cagttaaaaa ttgctgccct
    10681 tgtcgtatcg cactgtttaa ctgattcaga cgctgttgta cattgtctaa agtcgttgcc
    10741 ccttgattca atgctgcgcc caacctgtca gaaatatccc gtagtgtttg tgtaaaatct
    10801 cctctaaggt attttccaac agcgtttaac tgatcttttg ctttagatag actatccaat
    10861 acatctgcag cttctgcttg accagagttg cctgctgaga tagcatcctt taatgcattc
    10921 aaacgttttg ttcgttgttc aatatcttct tgcactgttt tgagtcgtga ttgggcatct
    10981 gaaaaatcga caccttcact tttttcaatg tttgctaaat aatctctata atcacgaatc
    11041 gttttcgtcg cgttattcat acgtgcaatg aggtggttta acggcgattc aaattgtttt
    11101 ggatctttgg cgctcaaaat accgtaactt aagttttctg ccgtatctaa atcagcggac
    11161 gtcgctttaa attgttgtgt taccgcttga ttcacttgct gcaatgtatc cccataagcc
    11221 gtcgtcatcg tttgcgcatc tgctggtgaa atgatgtgac ccgctggaac gttggtacta
    11281 tctccttgtg tcgtcgtact cattgctgcc gtatgatatg ccgtatctcg tgtactttgc
    11341 ggtgtggttg tagtcgcatt tcgcgcattt tctcctacag cttgatttac tactcttcca
    11401 cggtccacgc gattttgaag tacattcaca cgttgttcta ctgcaggcaa tagctgttga
    11461 atttcgttca gtttaacaag tgcttgatct gtacctgcaa tggcacggtc caccccatcg
    11521 ttaatctctg ggaaatgatt aggcacacca cttgccactt ggagcacacg ctcaatgtct
    11581 ggcatcgctt gatttaatga cacaataagt ttggcacgct cgttaatggc tgggatgctc
    11641 gcgttcagtt gatttaaacg ctcggttgct gtcactgcat catctttata ttgatctagt
    11701 gctctaaatt tgtccgcata ttgatcgatt tggtcttgat tttcatctaa ataaatcaat
    11761 attttacgga acttttcgat ttttggcaat gcattattcg ccgcataaat gccatctctg
    11821 actttgtgat agttgggcaa ttggtcttct agtttaatgc caatacgatt tgcttcatct
    11881 aataaagctt tcgtcaccgt ctcgttaaat tttttgttcg catttctcac tatttcactt
    11941 gagccagcat ccgtcatttt aggtgcaatc gcgttcagct tctgattcac tttatattcg
    12001 acttcagctt gttgagggtc tttacgcaca attccagtca cttgatgcgt gaatttttct
    12061 ggaatataaa tcgccgcata atattttccc atttttaatt cccgatccgc cttttctcga
    12121 ctcaccattt gccaatcaaa atggtcatct ttacgcaaag tctcttctat ttgattccca
    12181 acgttaattt ttttattgcg caccgtatcg cctttatcct cgttgacaac tgcaatttta
    12241 atgccgtctg tattcgaata cggatcccaa gtcgcttcga ggttgaacca cgcataaaaa
    12301 gaaggcagta tcgctaaccc taaaatcagc accatcgctc caggtgtttt agcaattttt
    12361 ttaatatccg tcagaaaaag tttgatggca ttcttcattt tttcacctca atattttgtg
    12421 aaacacttta ttatttactt tcattcatgt aatataaaat atgtataaca attgcaaaat
    12481 ttcgttgttt tcatttttaa gttaacacgc atcaacgaaa tgcaagacat cttttagtat
    12541 aacaagttct ttagcatttt gtataccttt gtataaacgg aatgcttttg atagtgatga
    12601 atcaaacacg ttaatctcac atcacgtcac ttccccttgt gacccgagtc gtgccattat
    12661 cattgtgcat ttcaacccta ttttacacat caatcactgc gcttttttta agaaaggagt
    12721 cttaaattga ataagaaatt catttataca gggttgttaa gtactgcatt gctcatccct
    12781 tctgtcacac ctcaatgggc tgttgcagca acacctcaaa ctgaaaatgg acctaaaaat
    12841 ccaaaagtgg ataatcatga tcaagatgtc gcgtcagacg aaacacgtga cgaccgtaaa
    12901 aagcaatctc aatcatcaga taaaaaagaa acaacgaaac gagaatcatc gaaaacaagt
    12961 gagaaaacaa cttcgcaaca acatgattca aaaaaggctg accttttcga cataacatcc
    13021 cctttggatt cacagttgaa atcgtctttg tcgcctcata cagattggtt tggccaactg
    13081 tttcattcta cattaaatga aacaacagac gcgcctcagc atacatatcc agcaccaaca
    13141 aatgacgcga catcaatgcc aaaacaagcg caatcatcga cgcctgaaaa tcgagacttt
    13201 ttcgagcaac ttcaagcgat tctgagcggt ggtgaagaca gcaaaaatga tacgacaact
    13261 tcaactgatg acgcattatc atcagaccaa gcaacaacgg catcaccttc aactgaacag
    13321 cgagacaatg accaagaaaa tgttacacct tcacacaaca cggatacttc gaatgaacag
    13381 ccctcaactg aagatgcgac aacttcagaa aaaagcaaag ctacatcaga aggcacatcg
    13441 gaagtaccac ctgtgaatga cgatagtaca actgaaaagc catcaacaac ggtagatgca
    13501 ccggataccg aagataaaca aacagaaaac catgcgccat caactcgtga cgacgcgact
    13561 tcggatcaac aaactaaaaa aaatcaaaat gatgcggtga ttgatgcact gttagacgaa
    13621 tatagcgaaa aagctgaaca aacgcatcat gcatatcaac aacaaaaaga ggctaatgag
    13681 ccatcttcaa cgtcaaaatc gccaaaacat gaagcgcaag tttctgaccc tgacactttc
    13741 aagtcatcac gagaacaagc gccgaaacaa tcctatcaaa acgaggcaga tagaaagcaa
    13801 acacgtcaaa cgacactgtt tgaaacaata cccgattctg atacgtctac aaatgatgca
    13861 ggaacaatgc gtgtcgtccc gcaatcatca acacgtgagt ttattaatga cattgcgaaa
    13921 gatgcacatg atatcggtca acaagaagac ctctatgcct ctatcatgat tgctcaagcg
    13981 attttagaat ctgactctgg tagaagtgaa ttatcacgtg atccttattt caacttgttt
    14041 ggtattaaag gcagctatca cggagaaagc gcacatttca aaactttgga atcagacggc
    14101 aagcaattgt atgaaatcga tgctgctttc cgaaaatacc ccgatcacaa agcgtcctta
    14161 caagattatg cagatttaat taaaggaggc atcgatggta atccgaatat ctatgaagac
    14221 gtttggaaaa gccatagttc tagttatcac gatgccgctt cagcactcgt tggtacatat
    14281 gcgacagatc cacaatatga ccaaaagtta gaagctttaa ttgaagcgta cgatttaacg
    14341 cgttttgacc aagatgacat gccagattta ttagctgaga aagatgataa cgaaactgcg
    14401 aaaagcgatg gcggtgcttt caaaccattt gccatatctg cagactcacc gtatccgtat
    14461 ggacaatgta cgtggtatgt gtacaatcgt atggcacaat ttgacattca catttcaggt
    14521 acaatgggaa atgccgctga ttggacttat tctgcactta cacaaggtta tagcgtatca
    14581 agcaagccaa aagtacacag tgcagtagta tttaatccga atgaattagg tgcagatcgt
    14641 tattacggtc acgtcgcctt cgttgagaaa gtgaatcgtg atggttccat cgttatatca
    14701 gaatctaatg tcaaaggact gggtgtcatt tcattccgta caattgatgc aaaagatgcc
    14761 gcacaattag attacattag cggtgactta gcaactgaat aaagaatttt actcatgctg
    14821 ttttatttaa aaagtggtag aggcaaggac attaagttat ccccgcctct accacttttc
    14881 aggttttgct ttatttatat ttattaaaca gtcaaaaaat aaggatgaat tggacataaa
    14941 aattggatac tattggtttt cttgatttca taaacttgca ctcaatttca atattttaat
    15001 atcagatttc ccagaaggct gagacgcctg tgggaatacg tgcatactgc tgacaatgac
    15061 ctcttttctt taatagcggt tactgtttat cgcagtagct ctctgacttc tcaatgttta
    15121 cacttttgag aagccgagtc agccttgcgg ggacaatacg acgaaacctt tgtgacacat
    15181 gatatttctg taatgctccc aaaatccatt aacagctcaa caaatgtacc cgtttaatca
    15241 agcgtttgtg cgttgaaggg gcaccccttt ggaaagggaa gccttaatgg caatcaaaac
    15301 cataaagcat tgaggacaag ttaaacaaaa tatcgtatca atcgcatcaa aaatttttat
    15361 ctctcctccc cttatttatg catagttttc gtgcttattg tttgcgtgtt tttttatgaa
    15421 atctcaccgt taagatcagt acaccgattg caacgactaa aatacccaac ggtagccaag
    15481 tccgcttcac tatttcacct gtattcggta aattgaaatc gccattttga tcaaataaac
    15541 catctaaaaa accttctgat gccgtttgac tattaatcgc ttgatatgga tcgatattcg
    15601 gctttggcgc aaaatcatgt ttgaataaat caccaccacg acctaacaac gaatgatcac
    15661 gatttaacag ttgctgcaat ttgtcattcg tacgacctga agagtgaatg tcgtcacgat
    15721 ttaaaccacc accgagaata tttgcaatac gacgcagcgg tgcaaacaag tcattcatat
    15781 ctgtttgcgt attatgacgg atttgttgca attgcttccg taacgttaac aatcgattcg
    15841 cttgcgcact aagttcgtct tcaatcgcct ttaagttttg atgtgtcttc tttttatctt
    15901 gctgtacacg atcggcaatc aattttgcat tttctgcatt aagacggccc cctagaattg
    15961 attcaatcac ttcagcatct gcatccgtat tattaattaa cgcatttaaa atatcatctc
    16021 cactcgcctt accattcgct ttaaaatggt ctttcaagcg gtcgagtatc gctgcatttg
    16081 aaggcttgcc ttgcatgatt tcgccggcaa ttttgtgcgc ttcttgtttg tcaaagcgtg
    16141 ttcgtaaaat gctttccact agaccttgtg tatttgaatt attttccaac attcctaaca
    16201 ataaatcatc actcgacgtt ttgataagtc cgtccgcttg ttgatgaatt tcgtttgcca
    16261 attgttgatc tgttttacct ttaacatcta tctgtttcgc acgttcagcc gcttcttgtg
    16321 cattaaaaat ctcacctaat atcgattcaa ctgctgcacg tttatcgtca tgctgttgaa
    16381 gttcagttaa aatcgtatca ttttgcgcgt tcagttggtt ggctaccgtt ttcgcatcat
    16441 caagcaaagt cgccttctca gtcccagaaa tgtccgtacg ttttttaatg tcttgttcaa
    16501 agttttgtaa atgttgacgt ttttcttcaa aataattgtc agacttgtga tccacgcttt
    16561 ctgaaacgaa atggtcaatg cgtgtgattg cactgtcaat gccctggagt ggtgtcactt
    16621 gcttgtcttg cgttgcatag tcttgtttaa gtgtatcgac atcgttctta atatggtctt
    16681 tcagtgcgct cacatcttgt tgaccatgat gaggtgctac aatcgtttgt gctgaagatg
    16741 actcctttac tttgctctcg ccttcagtgg atggctctct tccttctgat tcagcactct
    16801 ttgtctctgt tgacgttaca tcttgacgcg cttcagttga ttctcgttga ccttcatcaa
    16861 cctttgcctt taacgcgcta attttttcat caatggcatc taattcaggt tgtatttcat
    16921 cgtccgattg agcgtcatga gctagacgat tggctgcttc tgcttcgtca acaaccactt
    16981 caatattttt tgacgacgta tcatattcac gaattaacgc aagaaattca tttttataat
    17041 ccgtatttaa atattgtaac gctttcactt ttttatctgc attttcacgt aatgttttca
    17101 aatcatcagt cgcatctgtc tgagctatcg ctgtcatttc gtgtgacaat gttgaaggca
    17161 tttgcagtcc actaccaacc aataaaagga cagtaccagc tttgactaaa cgatgacgca
    17221 tgttttgaga tgaaggggat tttcgttctg tcatgccatc attcctttct ataacatgtg
    17281 tctattatag cgcgtattga acacttttta aataaagata agttctattg caaattgaaa
    17341 ataagcaaaa agcaagagac tgagtcaccc ccagcctctt taagtcccag ttatgctttg
    17401 atgatacgtt gtaatgtctc gtataattcc gcttcattcg ttgtgtctaa caatcgttgt
    17461 cgtttgtcat catgcattaa gtttttcgac agttgttgca acacttttaa atgcgtatca
    17521 tgactttgtt ccggtacagc aattaaaaag acgagttgtg gcaatgtacc gtctaaactt
    17581 tcccattgta ccccttgatc atgtttaagt acaccaataa tcggttgacg tatcgcattt
    17641 gttttcgcat ggggcatcgc gatgtgcata ccgagggctg tcgtcgattc ggcctcacgt
    17701 gcgagtacag cctcttttaa caccgcagca tttgccacat agttttcacg cactaaacga
    17761 ttaattatcg tatcaatggc tttgtctcta tccataggcg ttgctgtttg aatcattgct
    17821 tgtggattca acatatcttc tacgtctgta tcgtcatttg ccttcactgt ggatattgat
    17881 gttctagata tcgcttgagt tgctgtcggt tgctttttaa atgttaacac gagtgctgtc
    17941 gtgacaaagc taccgactaa tactgcgacg ataaacatga gcaccccatc gatgcctcct
    18001 aataccgcaa caataggtcc accgtgcgca actctatcac cgacatgacc cagtgcagca
    18061 atgaccgaag ccaccatcgc accgatcata ttcgccggaa taatacgtaa tggatcttgt
    18121 gccgcaaatg gaatcgcacc ttctgtaatc ccgaagagtc ccatcgtaaa tgaagctttc
    18181 cccatttcaa tttcattacg gttgaattta cgtttttgaa taaatgtcgc aagtccgagt
    18241 ccaatcggcg gcgtacagac tgctactgcg accatcccca tgacgctgta gttgccttct
    18301 gcgattaaag ccgaaccaaa taaaaatgca actttgttca ctggaccacc catgtcaaac
    18361 gcaatcattg caccgataat taaagctaaa atgacaatgt ttgccccttg catccctttc
    18421 agccaagtcg tcaaagattc aaaaactgct gcaatgggcg cacctaaaat gaaaataaaa
    18481 atcatgccga cgaggaccga cgcaataatt ggaataataa taatcggcat aatcggcgcc
    18541 atcgcttttg gcactttaac atttttaatc catttcgcaa tataacctgc taagaaaccg
    18601 gcaacgatac cgcctaaaaa gccagcaccc gcagtactac cgtaaaagct accgtccgct
    18661 gcaatcgcac caccgatcat ccctggcacg agacctggct tatcagcaat actcaccgca
    18721 atgtaaccgg ccaatatcgg taccataaag ctaaacgcta atgcaccaat tttttcgaac
    18781 ggtttccaaa atgaatcatc gggaatcact aaaccttgtg tcgctgtttt ttcaccacct
    18841 aatgacaatg ccaatgcgat gagtaaccca ccgacaacga taaatggcac cataaaggaa
    18901 accccattca ttaaatgttg ataaaccatt tgcatgccat ttttgttatt ctcgctttgg
    18961 tgtgaagatg tctcacttgc ttcagcttgc cctgtcgaat gatacaccgg tacttccccc
    19021 tgcaccacac gttggattaa ggcttccggt tgatgaatac ctgctctgac actttctttc
    19081 aggagcggct taccattaaa ccgtgataaa tccacttgtc tatctgcggc aataataata
    19141 ccctctgcag ctgcgatttc ttcagctgtt aatacatttt ctgtaccgac acccccttgc
    19201 gtttccactt taatatcaat accgagtgac gctgcggctt gttctaactt ttcttgtgcc
    19261 atatatgtat gcgcaatacc gtttggacaa gatgtaactg cgagtatttt catacgaatg
    19321 cttcctccct tcacaaaatt catacacctc catcttatcc gcttcatcca tgcaattcaa
    19381 cgtgtttttg aagcgcttac aaattttcac agccgatgca cattccattt taaaaacgag
    19441 acaaaaagca agtgcgcaac attatcagac tcgcatgtca cgcactcaat cctcattatt
    19501 taattggttg tatcgtaaat ttctgtacaa tatcctttga agccacagtt cgggcaagtc
    19561 aacagtcttg tttgagacgt atgcggtgca aataaccatg ttcgatatgg cggtttaaac
    19621 tgctgttggc aatttggaca catgtaactg acttgctgat agtacgtatg tgtcattttt
    19681 ggggctactg taattgcact tccaaatcct aaaacggctg gccataattg acgatatttc
    19741 caactcaagc caataccaat cacttcaaat aatgtggctg tcgttcccat caaaaacatg
    19801 tgtttcacga gacgttgatg ttgtggtttt tgtttcatcg catcttcaat gtcagataga
    19861 tttttaacag gtgcacgtga tgaatccagt atcatctgtt gcatttgctt catttgtttc
    19921 agttgctgtt gttgttgtcg tatttccgcc tcagtttctt ctacttttcg tgtcactaaa
    19981 gtacgtaccg tttgaagtgt tccatccact gacaacattt gcttaatctc tttaagcgtg
    20041 agacctaatg acttcatcac taaaattagg cgcaactgtt ccacctcatg ctctgtatac
    20101 atgcgatatt gattatcgtc tatataggca ggttttaaga tgtgttgaag atcataatac
    20161 tgaatggttc tttttgtaag tccaaacata ttcgcaagtt cacctgtcga ataatgtgac
    20221 atcgatttca cctccatact tcatgtatag cctatgacgt cacgtgacgg tcaacaattt
    20281 catgcataat ttcgatcatt ttttcaggct catcgacaaa tggggcgtgc gcagtatctt
    20341 gaaaagcgta aaaacgtttt tctgcagaac cgacatgctc aaaaaaagct ttactgtctt
    20401 cgtaagtcgt ctgcatatca tgaacacctt gtaaaatata aaatggcacc gttatttcct
    20461 gggcaatatc atttaaattg gtatgcgcca tttcgctcgt caaatgttca aatgtggata
    20521 aactgcctct cacaatatta attctttcca tgagacggta ataaggcgtc tgcatcatta
    20581 cccgaaacat gcgccaaacc gaatagccat gactcgaaaa gccgacatgg taacgcgcag
    20641 tataacgttg tcttgctttt tcatattgac aatcttgatt aaagtcccgt gttaaatgaa
    20701 tcgctttgag ttgctggatc gcacgttgat tgcgttcttc atgcgctaaa aatatcaagt
    20761 gctgcaaaat acactgttca ttgccaaaca cgtctccgag ctgacccatg ccaatatacg
    20821 cggcaatata ttcagggtaa cgatgcgcga ggtgcgtgcc aataatcgta ccgaatgagt
    20881 gacacatcaa atacacttgt tcttgttgaa aatgatgccg taaaaattga atcagttgat
    20941 acgagtcaga gattaaatcc gccatttcaa ctgtttcacg ggtataagac atacctgtgc
    21001 cacgttgatc ccaaaataca actgtataac gatcagttaa gtcaatatga tgtgctctaa
    21061 aaaaggaata aagcggaaat cctggcccgc catggactac gagtaatatc ggtttagctg
    21121 tgcctcttga ttcaacaatg attccttgtc gatggccatt taatgtcaaa tagtgtttct
    21181 gaattgtacg tccatctcgt tctatatatg ttttcatttc tacacctcgc atctttagat
    21241 atcattataa tctattttga gcgatttgta gtatttctag gttaaggaaa ggacaatcat
    21301 acaaaaaatc aaaacacaaa aacaggctag gacattattt tcctagcctt tatctattca
    21361 ttaaagatta tcaaacagca taaaaaagaa gatgaattgg ataaaaaatt gatgctattg
    21421 cttttcttaa ttccataaac ttgccctatg ttactgtatt tgatgtaaga ttgcccggaa
    21481 ggctgagact cccgagggat aagttaaagg ctaaacaacg tcatttaact ttaaaagtgg
    21541 ctaccgttta acgcagtagc tgtctgactt ctcaatgcgc atgcttttga gaagtctagt
    21601 cagccttgcg ggggcagtac aacgaaatct ttgttacaca tgagatttct gtactgctcc
    21661 caaaatccaa ttcggctacc accaaatgta cactataatc aagccgaatt gagttgaagg
    21721 gccagcccct aggaaagatc agccataaag gcaatcaaaa accaatcgta gcgagagggc
    21781 aagttaaaca aaatattgca tcaatagcat caaatttttt attccattcc ctttccatct
    21841 atctatgcat gtgctttttc ataatgataa ccaatttggt atgtagacac tttattcttc
    21901 aaaatcgggc tttctttctc ttcatgatgc tgcctaacat ttttatgtga cgctttaaac
    21961 acatctgagc ctaaccattc acgaaacgca gcctcagatt gccaaaccgt taaaattttc
    22021 acttcatcat attcttttaa accattcatt tgtgttacat acatttcgat gaatccatca
    22081 atcgtctcaa taccttgacg acggtggaat cgcttcattg ttgcctcagc tgtgcctttt
    22141 tgtaatgtca acttgttttc tgccataaac attggacttc atctcctttt acgcattcgc
    22201 cctgattgcg actgcaccct tattgtatct atctccaaat gaggtacctt gattgtcaat
    22261 tcgatacaga tccactgttc aattgataac ttctttcatt atagttgata aagattatca
    22321 ttatcaacta gaattttgtg attcacctat ttttaaattt ttttgtcaga taatgcaacc
    22381 cgattgaata tatgataacc caacagaaaa cacctataat gaatacaacg gtataaaaat
    22441 gatacaaata aaagcctaag ctccaaacaa ataatatagc tatcatcatt tccgtccaaa
    22501 tcaaccatcg tctacgaaca gtatcacgat tgcgttcatc aatttgttca aagtcgatat
    22561 tggcaatcaa aacatctaat ttaaacatat gaatcacgag caaaattata aaaagaaaac
    22621 ctaaaatggc aagtgaaata atcattgagc taatcctttt ttatacgatt ttagttaata
    22681 aaagcataac ataaataaag aatttaaagg aaggttcgat aataaaaaga ccggaagatg
    22741 tgttctccca gcctttagtt gattcaatca atcgttagtt agtttttgta ccgattgaga
    22801 ggtatttagt ctctagataa ggttcgatgc cttcaatacc accttcacgg ccgtaaccac
    22861 tctctttcac accaccaaat ggcgcatgcg gtgcggatgg tgcaccgtca ttccaaccta
    22921 cgacaccgta atgtaagttg ttgtatatat aaagtcctgt acgataatcg tttgtgaaga
    22981 agtaagatgc caatccaaat tctgtatcat tcgctaaatg aatcgcttca tcaatatcag
    23041 caaaacgcat tacaggcgct actggaccga atgtttcttc gtgcatacat ttcatatcat
    23101 ggttaacatt cgtaatgact actggtttta agaagttacc acctagcgct tgaatgtcat
    23161 ctaattcacg tgataattga ccgccatgtt caaccgcatc ttgaatgtga tcgagcactt
    23221 tatcgacgcc tttttggtta atgagtggtc caattttcac atctttctcc ataccgtccc
    23281 ctacttttaa ggcatggact tgttcaatga gttgtttttc gtattcttct gcaatgtctt
    23341 cgtgtacata aatacggttg gcacaaatac aagtttggcc tgcatttcta aatttggttt
    23401 taatcgtttg ttcgactgca tgttcaatgt cggcatcttt atgcacgatg agtggtgcca
    23461 gaccgccgag ttccattgtg acatttttta cagatgctgc tgattgttcg attaactttt
    23521 taccgatggg tgtagagcct gtgaatgtca ctttgttgat cagttcatgt tcagtgaaaa
    23581 tttttcctgc tgttttacca cttgctaaaa tgtatgaaat cgcatcttca ggaatgccag
    23641 cttcatgtgc taattcgact aaacgaatcg tcgtcatggg cgtttgtgtc gctggtttac
    23701 atacgattgt acaacctgct gcgagcgcgg gtgccatttt acgtgtaatc attgcagctg
    23761 ggaagttcca cggtgtaatg gcccctacaa ccccaaccgg aaatttatcc actaaaattt
    23821 tcttatctgg cgaattagcc ggaatcgttc taccgtaaat gcgcttcact tcttcagcat
    23881 accaatccac ataaccaaca gcgtaatcca cttcacctaa tgcttcttga taaggcttgc
    23941 ccccttcaag tgtaatcagt tctgctaatg cttcacggtt ctctttaatt aaagttgacc
    24001 atttccataa taaacgtgaa cgttcatgcg catcgacttc acgccatgat aaatatgctt
    24061 catacgcacg ttcaatttta tgatgaattt cagcttcttc tgtaaatgca taagttttaa
    24121 taacttctcc tgttgaaggg ttttctacat caaactttgt catcttccat ccctctttct
    24181 tttagttagt gaccgtatga cacgtcattg cgtctcatac aattatcgta acatgtcgtt
    24241 aaatttgtta catacttttc actcagaatg tgttagatta gatttatatt tttaatgaaa
    24301 gtagttgatt ctaacatgac aaccgcaatc ccaaactgtc cgcagtgtga ttctgaatat
    24361 acttacgaag atggcggact ttacatttgc ccgatgtgtg cgtatgaatg gacaaacgat
    24421 acactcgaag cagctgctga acaagccgtc atccgtgatg caaatggtaa tccacttcaa
    24481 gatggtgaca cggtgtcagt cattcgcgac ttaaaaatca aaggcagttc tcaaatgatt
    24541 aaacaaggaa cgaaagtaaa aaatattaaa ctcgttgacc ctgaagacgg ccacgatatc
    24601 gactgtaaaa ttcctggttt tggacaaatt ggtttaaaat ctgaagttgt gaaaaaaatt
    24661 aaataacgtt aaaaaatagg acaacattgt cgtgcgatac gcgctcaagc tgtcctattt
    24721 ctatagatgt tattaaaatg cttcgtcgac agatgcaatg gcttcatcta tcgtttgacc
    24781 tgtcgataag gcaactgccg caatgaaact gccttctaca attggggcat ccactttttc
    24841 aatacgatgt gtccccgtat acatttcaat cgccatatcc aaattcattt ctgatgaacc
    24901 aatatcaaaa aagcaaatcg catcatcgtt tatatcattt aacactgcgg aaatgtcatc
    24961 aaaagacgta ccaatttcac cttcgatccc accaatcgca acgacattca catcttgtgc
    25021 catttgtgca aggagttctt gtgtaccttc tgcaatttta tcactgtgac tcactaaaac
    25081 gatttgtgtc acgcttcatc agctcctatc agtgcattta aaatgtaaac actactttgt
    25141 gcaccagggt caatataccc gattgagtct tttttaaaat atgaagcacg gcctttcgtc
    25201 gcttcgatat cacgtgtcgc atccgcatat gattgtaacg tcgctaaatc gacagtctca
    25261 ccttgttcta ccgcttctct cgcacgtgca atgacgtcat acattgtttt ttcatttaaa
    25321 gttactttac cgcgttgggc tacagcttct tcaaatgctt ttaacaattc gactaagttg
    25381 tcatgatcaa tctcatcatt tgcgacttgc gccattttaa caaaactaaa accgtataat
    25441 ggtccagacg cgccgcccac ttttgacatg agcgtcatac ctgtcgtttt gaataaagct
    25501 tgcatcgagc tgtcgtctaa ttggtcagga agcgcttcaa aaccacgtcg catattcaca
    25561 ccgtggtccc cgtcaccaat cgcacggtct aactctgtca aagcctcttc ttctgtttca
    25621 aatgtttctt ttaatgcaag taatcgtttt tttaaagttg ctacgtccat cttggaaacc
    25681 tcctggatta tgttaaaaaa atcgacttgt tgtaggtgcg cgaaatgctg ataatatgtg
    25741 ttcatcataa ggaacaaatg ttaatgaaaa gccttgcata tcgagtgatg tcatataatc
    25801 acctacaaac catcctttta cagtctttcc ttcttgttct aactgtaatg cgacatattt
    25861 cgtcacaata tctaattctg ataatggtgt accgcccatg ccattgacca tgacaatcaa
    25921 ttcatcgctt gtcacttcgg ctttcaattg ttcaatcaaa cgttgcacaa tttgttctac
    25981 cggttcaact ggtacacgtt ctaacccacg ttcaccgtga ataccaatgc cgatttccat
    26041 ttcactctct tcaatatcga aaccatactt acctgtcgtt ggtacagcag gcggtgttaa
    26101 tgccatccca atcgtacgaa tttgatcaat caatgcttcg acttcagttt tcagctctgt
    26161 taatttctta ccacgttctg ataaataacc ggcatattta tgaacaaaga ccgttcccgc
    26221 aacaccgcga cgtttttcaa catcatcaat cgcaatgtca tcacctacga cgaccatttc
    26281 gacttgaatg tcttccatcg ctgccatatc tttagccatt tcaaagttca tgacgtcacc
    26341 tgcgtaattt ttaacaataa gtaatacacc gtctccattg tccaccgctt taatagcttc
    26401 taacacttta tccggtgtcg gcgaggtaaa cacttcacca cataccgcag catctaacat
    26461 accttcacct acatagcctg catgtgcagg ttcgtgacca ctgccgccac cagaaactaa
    26521 tgcgacacca gacgtttttt tatgctgacg tacaacgacc gtatctgcaa tgacatcaat
    26581 gttcggattt gtaattttca acccgtctag catgtcttgc aaaaagtgcg tcttatcctg
    26641 gattaacttt ttcatttgct caccttctat cctattttct tctattataa attttacaat
    26701 gaaaacgttc acgcaaaaac tattgtgata tatttgacaa ttctgtatac aaaaaagttg
    26761 tacagacgcg cattccaact tacacgtact gtacaacatt ttttatgcta ttgaattgtg
    26821 tctagaagaa gataagtgtc aaaatcggaa caactgctac aacgacaacc ccaaccagta
    26881 caatcgcgat gctcgccatt gactcctcta ctggtcctaa ttcttttgct gccgctacac
    26941 ctaacgtatg tccgctcgtt cctaaagata agcctctcgc aatcggatca tcaatgtgga
    27001 accatttcaa taatttatta cctaacgcat aaataatgac cgcatttaaa ataaccgcta
    27061 atgatgtcaa ctctttaata ccgccaatgc cttctgatac aggtagtgca atcgctgttg
    27121 ttgctgcttg cggaagcatg gatgcgataa tgtcactacc gaattgaagt gcttttgcga
    27181 caaagaaaat accaacaagt gccaatacag taccaatccc aataccgccg ataatacggt
    27241 gccaatgttt caccaagaca tcacgctttt tgtataaagg aatcgcaaat gaaattgtcg
    27301 ctggtccgag gaagaaatta atgatatccc caccaatttt atacttttca tatggaatac
    27361 ctgtaaagtg taagaacgct actccgaaaa ccatcgcaac aaagagtggt gcgaataaga
    27421 aaaagccatt tgttttctta aaaagtacag ttgcgattaa aaatggaatc actgataata
    27481 aaataccgaa atacggtgtg tctatagcga gatgattaac catgtgaatg cgctcctttc
    27541 actttcgctt tcgtacgcgg cggtgttgct actttatctt tcgtcgtcat acgcattaaa
    27601 atttgtgacg caaagcctgt aaatacaagt agtagaattg ttgaaataat aatcaagcca
    27661 ataatgagaa tcggacttgc actaataatg tctaatgaat ttacaactga aatcccagca
    27721 ggcacgaata aaaagccaat attattcgtt aacgctgtgc ctactttttc aacttgaccg
    27781 agcttgatca cacctgtaca taataaaacg aacaataata cgagccctat cactgatgcc
    27841 ggcataggaa tcggcataaa tgattcaata atacttgaaa caaacaacac tgatgcaatc
    27901 actaacactt gatgtaaaaa actatacgtt ttctcttctt tttgtttcac ttttacaacc
    27961 tcccgtgcgt ctctgattga cttcattata ttatgaaaaa attcacatat gccgttttca
    28021 tcgcgaaatg caaaaaaaga ggcgtgaaat acaaaatcac acccttgtcc aacaaccaca
    28081 ctatttaaat gtcatatagt ggcgcaaagc atactttttt aaaatcactc aactttcagc
    28141 aattcgaacc tgttcccttt cacttaacac tatataaggc ggcaaatagt tgaccggtgt
    28201 catcgcctcg gaaagcgcaa cacgattcaa gatctcgcac tatcctttct ctcctcgaat
    28261 actgaagggg ggtaggcttt gtttcatgag gtgcagtttc gttctaatca tttcaaccca
    28321 ccattgacca gcttgaggca cttacccaga ctgcaagaat cgtgcaagac tcccgaggga
    28381 taaaataaat atctaaatat gatttctact ctttaatagt ggttcctgtt tatcgcagta
    28441 gctgtctgac ttctcaatgc gctcgctttt gagaagtcta gtcagccttg cgggggcagt
    28501 acgacgaaat ctttgttaca catgagattt ctgtaccgct cccaaaatcc aatttgtctt
    28561 ccatcctgcg tacatctcaa ccaagccgaa tttagttgga ggggcagccc cttggaaagc
    28621 gcagcacgat tcagcagtca acgattaccc caaaaccaca aatgtatctt caagtatttc
    28681 taaaatacca ctcatgaaat caaagagtga gacacatcaa accgactgtc tcactcctca
    28741 tcattccact cacagcttta aacccatcgc ctgcttaaac ttcttcatat acgaccgact
    28801 cacctgcatc ttcaccccat ccgtcaacgt caccatgtac gtcgaattaa accaatgctc
    28861 aatcgcctca atatgctgtc gattgatcac attcgaccga tgaatccgaa taaactgtgc
    28921 ctcatccaat cgcttctcat acgcactcaa cggctcatgt gtctcatact caccttgcgt
    28981 cgtataaatc gtggtcacac cttgattgac cgaaatacca atcacgtcaa cagggttcag
    29041 catatgaata cgctcaccaa tttcaatcgg taaaggttgc gttactttca cagctgaatg
    29101 tggcacgtgc atgtcttcgt acttttcctg ctgtgcacgc acttttgcca cagcttgcgc
    29161 aatgcgagat tgatcgaatg gcttcataat ataatctgtc gcattcagtt caaacgcctg
    29221 taccgcaaat tggtcatgcg ctgtcgcaaa tacaatcgca ggcggtgctt tcatcttctg
    29281 tattttttta cctaattcaa tcccattttc attcattaaa ttaatatcta aaaacaccaa
    29341 atcatattcg tttactaata acgcttcaat cgtttcgctc acattttccg cttcatctaa
    29401 aacatcaaat cctccgatac gattcaataa atatatcaat tcattacgcg cgagtggttc
    29461 atcatcaaca attaatgcac gcatgactta atcctccttc tgttgataag gtaacgtaca
    29521 ccatacgcac gtccctgtgt catcactatc aaaatgtagc gcggcttgct cactgaacaa
    29581 accttttaat cttaaattta aattttctaa agcactaccc gttcctgact ctgactcgac
    29641 cactttttgg cccaattgcg tcaatttatc tggtggaatc ccacgtccat tgtcactcac
    29701 ttcaatatag agttgttgcg catcttttaa tcgtgccccg actttaattg tgttgccctt
    29761 tttacggttt ggaaacgcat gtttgaccgc attttccact aagatttgaa ttaaaaatgg
    29821 tggcacagat gcttgttgca ccttttgtgg tacatcaaaa gtcacatcaa atcgccctgg
    29881 aaaacgcgct tgttcgagtg ataaataagc cgtcacttga cttaactctt tctctaaagt
    29941 gattgtgttt tgacgcgaac cttgtaaatt tgaacgaaag aaatggctca actcgagtaa
    30001 taattctctc gctttttcac tatcaatacg tactaatgct gaaatcgtat tcatcgcatt
    30061 aaaaaagaaa tgcgggttca cttgtgcttg aagggattta atctccgcat ctttcaacaa
    30121 cttactttgc atctctgctt ctcccagttc gatttgacta ctaaaaatct ccgccaaacc
    30181 ttctgccaac tgtcgttcga caaacgttaa attggtcgga ttcgtaaagt acatttttaa
    30241 cgtccctgtc actttcccat gcattttaag tggaatcact agcgcggcat gcagtggaca
    30301 atgcggatgc gtgcaaccaa tttcctcttt cgtatgcact tctttaagct caccagtttg
    30361 tagtaccgct ttagataaat gcgtaataat ctctttttta ggaatgtgat ggtcactccc
    30421 cgcccccaca tgtgccaaaa tgtcatgtcg attcgtaata gcgacggccg atactttcat
    30481 caaatcttta ataatcatcg ccacgtgttt tgcggagtct tcattgagcc cctctttaaa
    30541 ataaggcaac gtttgattgg tcaattctaa tacatcatgt gtttgaacgg cacgcatttg
    30601 ttcttcttgc ttcaaagttg aactgatgat agacataaaa atcgctgtac ctgcactatt
    30661 aacgacaatc atcggcagtc caatcaaagc aatcaagtcc atcgcatact gtttgtcttg
    30721 ggcgaacgaa aaaatacaaa tcatctggac aatttccatc ataccaccga tcaatgcact
    30781 tctcgcaatc gttggatatt ggtgttgttc gagcgcttga cgtccataat atccagaaat
    30841 aagtccaata aatagggaag aaattaaata tgtatatgct tctgcaccac ccatataaag
    30901 gcgaaaaata ccagataaaa tgccgacaaa tacgctgaca aaagggcctc ctaccagtcc
    30961 tgcgacaccg attgtcagca cacgtgtatt cgctaaagaa acattatcat ctaattgaaa
    31021 ataaatgctc cccgctaaaa tatcgccatt tttaatgacg atacccgtaa agttagacaa
    31081 cagcgcaaag aggctaaaga cgatacacaa ttgccacttt gatgcccatg cttgtcgctg
    31141 ttgcatcgta tgcttgaagt attttgaatt cattaaaatg tacgccaata taataatgag
    31201 tccgacacgc tccaacagta atatcgttaa attaaacatc gattttggct ccttttgcaa
    31261 tgatgagact ttttgaaact ttattctagt ttatcacaac acaacaaaca tgcccgatag
    31321 atagaatgac taatttttta cagttacaat gatttaatat agaaaattac gccacgatct
    31381 aacttttgtc agataataac ggtgctgtat gtgtgagtgt tttttataaa agatgattaa
    31441 gcaggggttt ctacatgttt tgtactgtga tgccttccag ttgatgtgtt tacaatgggg
    31501 atgtcaactt ccttcaatcc ttactgccgt taaagatatt ccttttaaaa cattgattcc
    31561 taccatatta acaaaaatat aaacgattga taatataata agtgactttg tataaataaa
    31621 gttcaagccg gtagttcacg tccatttaac acttaacatt caaaataaaa aagcagccga
    31681 cacctattta caggtatcag ccacttctct caattatttc aattcattta aatagctacg
    31741 tccaaactca ggcaatgtta cgccaaagtt atcggcaatt gttgcaccga ttgaactaaa
    31801 tgttgtatcg ccttctaatg cttgtccgcc tttaaacttc ggactataca tgatgactgg
    31861 aatgtactca cgtgtatgat ctgtccccgg tgctgttggg tcattcccgt ggtccgctgt
    31921 aataatcaat aaatcgtctt catgcaatgc atccatcaat tctggtaagc gattatcaaa
    31981 ttctttaatc gcttgtgcat agcctggctt atcacgacgg tggccatata atgcatcaaa
    32041 gtcaactaag tttaaaaagc ttaatccttt aaagtctttg ttgacgatat tcatgagttg
    32101 atccatgcca tccatattac ttttcgtacg tacggcttca gttacacctt caccatcata
    32161 aatatcgtta attttaccaa tcgcaatgac atcatagtca ttttctttta acgtattcat
    32221 cactgtttta ccaaatggct tcaaggcata atcatgacgg ttacttgtac gtgtgaagtt
    32281 accgggttcg ccaacatatg gacgcgcaat gatacgtcca attaaatatt tcggatcttt
    32341 tgtcagttca cggacttttt cacaaatgtc atacaactct tctaacggaa tgacatcttc
    32401 gtgtgcagca atttgaagca cagggtcagc agaagtatag acgattaagt ctcctgtctt
    32461 catttgatgt tcgccccact cgtcaataat ttgtgtaccc gatgctgggc ggtttgcgac
    32521 aactttacgg cctgaaagtt gttcgatttc ttgaactaac tcttctggaa aaccttctgg
    32581 atacactttg aacggttgca taatgttcaa gcccataatt tcccagtggc ctgtcatcgt
    32641 gtctttaccg actgacgctt cacttaattt tgtataatac gctaaaggat gatcaacagc
    32701 gtcaatcact ggtaatggcg caatattccc taagcctaac ttttcaaggt ttggtaactt
    32761 ttgatcaaat ccttcaagcg tatgttttaa agtgtgtgag ccttcatcgt taaagtcttt
    32821 agcgtctggg ccctctccaa tcccaactga atccatcaca attaaatgaa cgcgttgaaa
    32881 aggtactgtc atcttaatca ctcccacatt tattgaattc tttgattaat aatctgaatc
    32941 tacttctaaa ccttgcataa tttgtacgcc ggcacttgca ccgatacgtg ttgcacctgc
    33001 atcaatcatt gctttgaagt cttctaagtt acgtacgcca ccagctgctt tcacttctac
    33061 tgattcgccg actgtatctt tcattaactt cacatcttca ggtgtagcgc cacccgtaga
    33121 gaagcctgtt gatgttttca cgaaatgggc acctgctgct ttagttagtt cagatgcttt
    33181 tactttttct tcttcagtta aaagtgctgt ttcgataatg accttaactg ttttaccttc
    33241 tgcagcttta acgaccgctt caatatcttt ttgcacgtca tcataacgtt ggtcttttaa
    33301 tgcaccaatg ttgatcacca tgtcaatctc atctgcgcct ttacggatcg catcttctgt
    33361 ttcaaatact tttgtttccg tcgtgttcgc acctaatggg aaaccgatca ctgtacatac
    33421 gagcacatct gaatctgcta atttttctgc agcataagcg atgtgtgttg ggttaataca
    33481 aatcgatttg aaatgatatg cttttgcttc ctcaataatt ttgtcaattt gtgcacgtgt
    33541 tgattctggt tttaacaacg tgtgatcaat atatttttcg aaattcatac ggaacgctcc
    33601 ttattgatat aatttcttga ccctctcaat tatacaatta gatgcttcaa aatacgattt
    33661 ttttattttg agtcgattgc gataaattgg taatgaatat gtgcaacgca tgctcgtgct
    33721 tgaaccatta tggcatggca tattgccgtg tacaaatcga acaattttga gacagtctga
    33781 tgatgatgac ggcaagtagc cgaaactaaa aataaaatat tcagaaaaat gtgttgaaat
    33841 ctgaaaatct ctgtgctacc attgtcatat tctattcaaa tactttaact tggtagagaa
    33901 cgaaagcgag ggtggataat gggacaacct ttcatacaaa ataaacaata tgaaattgac
    33961 tttttaaagt tagcaacagc caatgatttc gaaccaattg agactgcttt tatcgaaaca
    34021 ctcgtgtggg atgaactgtc tccagatgat ttaaaacaaa tgaaagagcg cagtgtgtgg
    34081 caggcagatg atactttgtt tgctttacgc aatgatttca ccgatcaact tgtgcgctat
    34141 tatcaacatt atcaactcaa tcattccgct gtggcttata cggggccgat tgtgcgacac
    34201 catcaagtcc aaacacaact tggtctggaa tgttatcgcc cacatattca agaaatgtac
    34261 catgcttttg agacgttcca acaatttatc tcgcaacact tacaagatga aattcaatat
    34321 gtcgtgattg ggcattacca gctcatcgat ttattgcttg agtatcaagc tgaacgtgaa
    34381 cagctactga catgggttga acagcgtaat atttcggcac tcaaatccgc tcttggcatg
    34441 agtcatccgc tcgtacggtt attactcaca ccgacacatc agcaactgga acttttaaat
    34501 acgttatatc cacatgatca cgtcattatt cgcagtttga atcgttggca aacatacttc
    34561 aaatcgcttc acatcgacac gattcatctg gatattacac cgcaagctcc acgttcatac
    34621 tataaggaga cgtttattca tgcacacctt caaaacagtg gtcgaacgct atcaggaggc
    34681 tattataacg ggccactaga gggtttcggt ttagggttaa cattataacg aggaggaatc
    34741 actgtgctta cgatcgcatt agctaaaggt cgcctgctca aaagttttat cgcctattta
    34801 gaatcacaag gtcaaaacga tttggcagca caattaaagt ctagagaacg ccagcttcaa
    34861 attaaagtat cgcctttcca ttttttattc gtcaaaggca atgacgtccc tatctatgtc
    34921 gaacaaggca ttgctgatat tggcattaca ggcagtgata ttctcaacga agcgcaatac
    34981 gacgtcaatc aactgcttgc acttcctttt ggccaatgtc acttttcagt cgcagcattt
    35041 gacgagacaa cggactatcg caaagtcgca acttcttttc ctaaaacagc aagagattat
    35101 tttaaagcga caggacgtga tgtcgaactg atcgaattat ccggctctat cgaacttgct
    35161 tgtgtgattg gcatggtcga cggcatcgtt gacattgttc aaacagggac gacattgcgt
    35221 tcgaacgggt tagtcgaaaa agaacatatt acagatattc aagcgcaact cattacgaat
    35281 cgacaaagtt ttttcaccca atcatcagaa attgatgcat ttattaacat gttaggagtg
    35341 tcgctcattg atcgttaata gccaaacctt tttacaacaa ttcgaaacaa cagaaacatt
    35401 caatcctgaa attcacgcac aagtcactgc catttgtgac cgcgtgcgac gtgaaggaga
    35461 cctagcatta catgactata atcaacaatt tgatggcatc aaggtggagg cgttggaagt
    35521 gccacaagct gacattgcag cagcgtacca caatatagat gaagatttac gtcacgcact
    35581 tgagcatagt ttccgaagaa ttcgagatta tcaaacgcaa atcaaatacg aaaaccaata
    35641 cgcgacacct gaactttatg aagtgtatca cccgattgaa cgtgtcggta tatatgtgcc
    35701 aggcggtaaa gcgagctacc cttccactgt gttaatgacg gccacactcg cgaaagtagc
    35761 cggtgtgaaa aacatcagtg tcgtcacgcc gcctcagcag aatggtgttg caccgagtgt
    35821 actcgcggca tgtcatattg ctggtgtgga tcatgtgtat caagtcggcg gtgcacaaag
    35881 tattgcagca ctcgcttatg gtacagaaac catcccgaaa gtcgataaaa ttgtcggtcc
    35941 aggtaatcaa tatgtcgcct atgcgaaaaa agcattgtat ggcgaagtcg gtatcgatca
    36001 aattgcggga cccagtgaaa ttgcattgat aattgatgat acatgtaact tagaagcagt
    36061 tgtctatgat gtatttgctc aagcagaaca tgatgaaatg gcggggacat ttgtcatttc
    36121 aacagatttg gcattgctcg aaagtttaga aagccgtatc caacaaacac ttaacggtgc
    36181 accacgtcat gacattttaa aagtcagttt gaaagataat cactatctca ttcacgcgac
    36241 tgattttgaa gacagttgtc acgtgatgaa tacaattgca cccgagcatg catcaattca
    36301 aaccgcgcag cctgaaaact atttgccaca tattcactat gtcggcagcc tattcttagg
    36361 tggctatgcg ccggaagcga ttggagacta tattgcggga ccgagccacg ttctacctac
    36421 acaacggaca gcccgctttc aacacggttt atcggtcaat gactttttaa caaaacatac
    36481 ggtgattcac ttatcagaag caacctatga aaaaacgtat cgagatgccg cacgtatcgc
    36541 tcaagatgaa caactgtatc accaccaaaa atcattagaa attagacaaa gaggtgacaa
    36601 cgcatgattc gtatgaacaa aaatgaaagt ccgatcaaac cactatcgac agaagcatta
    36661 accgaactca tcgaaaagtg tgactatcac ctctatcctg acgtggcgta tgatcgtttt
    36721 cgtaaagctt atgcgcaata ctacggtaat actttcacac gcgaacaaat cacttgtggc
    36781 aatggctctg atgaactgat tcaaaagtta atgctcatca tgccagatgg accatgttta
    36841 acgctcaacc ccgacttttt catgtatcaa gattacgcgc gccaagtgga ccgcgatatt
    36901 caatttgtgg atgctacacc agagttatct tttccagttg aaaccgtatt ggacaagatt
    36961 gaagcggtac agccgagttt cttcatatta agtaatccac acaatccgac tggtcaccgt
    37021 tttgatgaaa gttatttgct ggccgttgcc aatcgcatga aacaactcgg aggctatctc
    37081 gtcattgatg aagcgtatat tgatttttca acaccgctcg atattgcgtt agaagatcac
    37141 attttggtca tgcgcacatt gtcgaaagct tatgcgatgg ctgggttgcg tctcggtgtg
    37201 ttaattggca cagaaaaaac gattcaactt gttcgacaaa ttgaacaccc ttacccgctc
    37261 agtgcgctca caatggcaat cggtattcaa ctattcgaaa accaagcaga cactgaagca
    37321 ttcattgcac accaacgtca tttaagctca cggttgaaag ctatattaca acaatatgcc
    37381 agtccacata tgacgattta tccgagtgag accaactttg tgctaactgc tggacctcaa
    37441 gcaatggcac tcggacgcca tgtggaacaa cacggctttc tcccacgttt ttacaatgac
    37501 ccatctgaag caacgatggc aggatttgtc cgctattcca ttgcgacaga agcccagcta
    37561 gaccgttttg aacaagtcgt caaagaatgg agtgaacgtc atgacatatc aaattaaccg
    37621 tgaaacgaaa gaaactaaaa ttgccattga actttcagaa gtgcaagaaa caagtcatat
    37681 cgatacaggt gtcggctttt tagatcatat gttgacacta ctcagctttc acagtggcct
    37741 gtacttcaat attcatgtcg atggcgatac gtgggtggat gatcaccata caactgaaga
    37801 tatcggtatc gtactcggtc aattattgtt acaactgacg cgcgataaaa aacatttcga
    37861 gcgttacggc caacaatatt taccaatgga tgaaacatta gcccgtgctg ttgtcgatat
    37921 tagtggacgt ccttatttaa actttaatgc gtcattcagt aaagaaaagg tcgggcagtt
    37981 tgatacagag ttagttgaag aattttttag agcgttagtc atcaatgcgc gactcacggt
    38041 acacatcgat ttactgcacc aaggcaatac acaccatgag attgaatcag tattcaaagc
    38101 gttcgcccgc gccttaaaac aagcattgcg cccatcacaa gaagcacgta tcccttcgtc
    38161 taaaggtgtg attgaatcat gattgtcatt gtagattacg gattaggcaa tattttaaat
    38221 gtccaacgtg ccgtacaaca tctcggctat gatgtcgtcg tctcacgtga tcctgcagtc
    38281 attgaacgtg ccgaacagct cattttacca ggggtcggtc attttaaaga cgccatgcaa
    38341 gccattgacc gttatgaact ggcgccatta ttgaaacgac aacaaaagcc cattattggt
    38401 atctgtctcg ggatgcaatt gctctatgct tttagcgatg aaggtcatgt ccctgggctc
    38461 ggctttttcg aaggtcatgt tcgtgcgata gacacgcctt acacagtgcc tcatctcggt
    38521 tggaatcagt taaaaagcga cgtcccgagt ttaaataaag acgtctatta tgtgcatacg
    38581 taccaagcgc cgatgaatga cgatgttgtc gcctatacag attacggcac tcaaattcct
    38641 ggtatcgtcc aacgcggtcc atatatcggc attcaatttc accctgaaaa aagtgggaat
    38701 tatggcttgg acatcttagc acaagcatta aaaggaggat ggcaacatga ttaaaatttg
    38761 gcctgccatt gatttaattg aaggtaaaag tgtgcgcttg accgagggag attacagcac
    38821 ttcagaggcg atgacgagaa gcgcaaaaga cagtattcaa ttttacaatc aattcgaaag
    38881 tgtcgaccgc attcacatta tcgacctcat cggcgccaaa gcacaacgcg cgattgaaat
    38941 ggattatatt caacaactca ttcaagcgag tgataaacca attgaagtcg ggggtggcat
    39001 tcgtgatgag gctacgttgc gacgctattt tgattcaggt gtcgattact gtattgtcgg
    39061 cacacaagca attacgaata cagcatggct cgctgaaatg agtcagttat ttcctgggaa
    39121 aatttatgta tccgtcgatg catatcgcac agcaatcaaa attaacggtt ggacagaaga
    39181 tgctgcgtta gacttatttg actacgtcgc tcaaatcgag acattcccgt taggtggcgt
    39241 tatttacaca gatatttcga aagatggtaa attagcaggt ccgaactttg aaatcaccgc
    39301 tcaacttgca caagcgacat cgttacctgt cgtcgcatca ggaggcattc gtgatcgaca
    39361 agatcttgaa agacttgaag cttcaggtgt tactgctgca attgttggta aagctgcaaa
    39421 tcaaagcaca ttttgggagg gattaagttg attaaaaaac gaatcattcc ttgcctcgat
    39481 gtgaaagatg gccgcgtcgt aaaaggcatt caatttaaag gtttaaggga catcggtgac
    39541 cccgttgatc tagccatgta ctataacgaa gccggtgccg atgaactcgt ctttttagat
    39601 atttccaaaa ctgagcgggg ccatgcttta acgttagaca ttatccaaca aactgccgag
    39661 caactgttta tcccattaac ggtcgggggt ggcattgctt cactcgatga catttctgat
    39721 ttgttaaagc atggtgccga caaagtatca cttaattcag cagcactcaa taaccctgaa
    39781 ctcatccgtc aagcgagcga aaagtttgga cgacaatgca tttgtatcgc catcgacagt
    39841 caatatgatc caaagttaga tgattatttc tgttgtacac acggcggtaa aaagcgcact
    39901 gataaacggg tgtatgattg ggtccaagaa gtcgaatcac tcggggctgg tgagcttctc
    39961 gtcacaagca tggattttga tgggatgaaa caaggctttg accttaaaca tttgaatggg
    40021 attgctgaac gcgtcaatat tccaattatt gcgtcggggg gtggtggcaa ggcacgtcac
    40081 tttaccgaac ttttcacaca aacccctgtc tcagcaggac ttgcggcaag tatattacac
    40141 gacaaagaaa cgactgttca cgaaatcaaa caagaactcg aaaatggagg tgtgcctgtc
    40201 agatggcctt aaaaccagat ttttcaaaag gattactccc tgtcatttta caagatgtcg
    40261 atacaaaaca agtgttgatg ttaggttata tgaatgaaga agcgttccaa aaaacggtag
    40321 aagaagaagt cgcttggttt tattcgcgct ccaaaggtcg tctatggaaa aaaggcgaat
    40381 cttcaggaca cattcaaaaa gttaaagata tgtatttaga ttgcgatcaa gatacattat
    40441 tgctgtttgt cgaaccgatg ggcccaacat gccacaccgg tgcacagagt tgttttggaa
    40501 cagaaggtgg ctttaaagtg caacaacttg aagaaacggt tgcaacacgt gcacaggaag
    40561 cagatagtgg ctcgtataca cagtacttac tcaatgaagg taaagagaaa attacgaaga
    40621 agtttggtga agaagcattt gaagtcgtga ttgcggcgat gaaagatgat cgtgatgaat
    40681 tgattgcgga aagtgcggat gtattgtatc acttgttcgt attacttcaa gcgcaagatg
    40741 tgacatttgc agaagtggaa gcgttgttgg gggaacggca tgagaagcgt aataatttta
    40801 aaggtgaacg tcaagatatt gaagaatggt aggttgcgta cattgtcgta acattcagat
    40861 tgctgaacca ttctgacctc agtctccatg ataaaaccct cattccagtg tgatgatgaa
    40921 cattgggatg agggtttttt tattcttaaa ataattcgcc gagtgttgca gccataatcg
    40981 ctttgatcgc atgcaaacgg ttttctgctt gttcaaagac aacagagttt ggaccgttga
    41041 atattgaatc tgtaatctct aacgcttcta atccgaactg gtcataaagt ttttgactcg
    41101 tggtcgtttc taagttatga aacgctggta aacaatgcat gacgatgagg tctgggttgt
    41161 ctgcttgaac aagaagcgta tcattaattt gataaggcaa catgttttcg atgcgtgtgc
    41221 cccactcact ttcatctgtc cccatcgata cccagacgtc tgtatagagt acatccgtat
    41281 gatagacggc ttgttggaca ttttcagtaa tcatgatatt cccgcctgat tgctctgcat
    41341 actggtgggc aatggtttga acatcaagat ggggttgtaa attttctggt gcggcgatat
    41401 gaatattgac gcctaatatt gcccctgtca caagtaaatc atgtgccaca ttgtttgacg
    41461 catcaccgac atacgttaat gtgcgatttt ctaatgcgcc aaaatgttct ttgatagtca
    41521 taaagtctgc aatcatttgt gtcggatgcc attcattcgt caaaccattc catacaggca
    41581 cacccgaatg ttgacttagc tcttctacat ctgactggtg gtagccacga aactcgatac
    41641 catcatacat acgtccgaaa acttgcgctg tatcggcaat cgattctttg acccctagat
    41701 gaatatcccc tttttcataa taatccacat gtgcacctaa atcatgtgcc gctacgctga
    41761 atgctgctct tgttcgtgta gagggctttt caaaaataag cgcaatgttt ttccctttca
    41821 aaaacggatg tggcaagtga tgctgcttct tatgttttaa cgccatcgaa aagtcaatta
    41881 acgtcattaa agcctcagca tcaaaatcct ttgttttcaa taaacttttc cctttgaaag
    41941 ccttcagttt ctttaaagta gtcgtgtacg tcccatcttc atcac
//
LOCUS       DANHOL010000003        38621 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.003, whole genome shotgun sequence.
ACCESSION   DANHOL010000003 DANHOL010000000
VERSION     DANHOL010000003.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 38621)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 38621)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..38621
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.003"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(153..2747)
                     /locus_tag="PTC08_000080"
     CDS             complement(153..2747)
                     /locus_tag="PTC08_000080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfhO family protein"
                     /protein_id="HDK5681619.1"
                     /translation="MKKQKQKSHLSRVLIVFIAACLVGCIVYVPVAFRFIHDGIIYSG
                     NGDGFKQMMPFQRFLYEHFSHLRSLYDNGFGLGGDYFTDLAYYYTTSPMMYVNFIFVG
                     LGQWLLHINPSDIAFWPGNQIFTAYLRCVITFLAAYGMFRQFKLERFYCYLGAILYAT
                     STVVYYFNFTWSFFGDILIYLPLSIWGIERFFRSRRIGLFIIAIALTLFSNFYFSYYE
                     AIILTVYLVYRMIWPHRDDQVGRWQKLYLLIPAVLCSLCIAVLGFLTGVRSFLNNDRQ
                     TNDVFISPIIDFSQKYHIFTNGFYITVTFIALVALFSFKLYRHYHYKMVAIFTWILLI
                     GSFSPYFDSAFNGFSFPQRRWVYILALTTSALIALWLKYLTELTIQSFLQSLIPIAVL
                     AIATVFFSRGAMWWMLVSVIILMVVAYHIYQRRPLTGWMQGVMLLLFIVQQFILLLNY
                     HHNNIAPYQSTMDDMKAPNYHSATLQQQIDTIKHDQSPLQRIDYMSTYAVNSSMIYDF
                     NGVALYSSIFDGNIFDYYDRQMQINMEYDSNSTYRLLGDRENLYALWGVTDRIKDAPD
                     RTMPYGMKKVQTIQDDNHAWIHSHQTIDYPSAHLTSRVYDAKDLKSPLDREQAMLQGV
                     VLHHQQANETFQANPNLLSTATVTPRDASMNGKILTVHEKDGGVNIDLPQNVKARYND
                     YYVEMDIELLSPNQPHYLKLDDFYQRRTKLNYAYRRFITPITVRVPVRDTMQLKLKQG
                     DYRFELKGIYGEDYSTLKRAASEVEPVQIEQDRQHIHAHFKTDKDQYLVLPIPYRQGL
                     HAEVNGEPRPVLQGNGLMTVVPVEKGDRDVTVTYSLPYWHILSLLTILGVVGAIVYRW
                     WLRRTIKY"
     gene            complement(2744..5353)
                     /locus_tag="PTC08_000081"
     CDS             complement(2744..5353)
                     /locus_tag="PTC08_000081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfhO family protein"
                     /protein_id="HDK5681620.1"
                     /translation="MRRYIQPISFIVLFLCMSLIGHAYILYRFFADGLLFTGPNDGME
                     QMVPIQMFLYEKWSEGTFFYATDFGLGGDFFTDLSYYFSTNFIFILTAGITWLLSITH
                     LVDSKDMMYWFTQAWVVSILKCTGAMIGTYYYARQLKLQHVSSVVFAVLFAMSPLYFR
                     FTVYWPFFSDVFILLPLLLLSIERFLKSGQLGLFIIMTAISFANNFYFAYYQVLMGLI
                     YYNLRMFHAHPDDQKRGMKTVLPLGVAAVLGVGSSLFFFFHGARSFFNNQRIPFEGDI
                     PFIELFNENTNLFYDNYLIVISFVVIQALLSFKLYRHFYFRLFAILSILTIIAAFIPY
                     VDSIFNGFSAPQKRWHYLLAFVTSGLVATYVQHFKSLSRLTYSLTAIPAMAVVFISAY
                     VYDRVVWWVGLIPIVFLIGLLVLTIARHDNKPRHFVTVSFACALIILQFAISAVFIKN
                     QVFHTDHEKRANTFYAQASLYNTPLQQSLVDQMNTEKHEDERIDWRVNEQDNTPMYQH
                     FKGLSLYSSIFDRQLIEFYYRYLMINLKEESVSRYQSTGSRSNIASLLSVRYLMEKDY
                     QHQQPANFEKVHQYGQYVIYENQYPLPAVRVSHQYYNGEDLTTPIDREHAMLDGVVLD
                     HQGQTYPKKAQNLIHEVEMTTYDAQWTRSDTLTVTELNGGVTLQLPETLREQYEDFYL
                     VVYFKRNAPDSNSTLDVSGYKNHRLFNNSKYRTGQNTLLYRVQPDNNGQIHLGISPTG
                     SYQFNIQCLYGEDYDTLKRAYHNQAPHHYEAHQGKIKVQLAEHSGGVAVINIPYRKGM
                     TAIVDGHAVTPQKVNGMMTGIKIGPHAKQIVIHYRPPYFNTMVVLSIISIISSIIYSR
                     WYQHKQSRKSEKH"
     gene            complement(5373..5756)
                     /locus_tag="PTC08_000082"
     CDS             complement(5373..5756)
                     /locus_tag="PTC08_000082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GtrA family protein"
                     /protein_id="HDK5681621.1"
                     /translation="MVNSARFFEIFRFVLVGGINTLNYYIVYLILLRLFDVHYLISHI
                     VGFIFSFVVSFYLNCYFVYKVRPTLKKFLAFPLTQVVNMGTQTLLIFIFVDLMHFNAA
                     LAPFVGLIVTIPITYILSKFILKDR"
     gene            5984..6856
                     /gene="ylqF"
                     /locus_tag="PTC08_000083"
     CDS             5984..6856
                     /gene="ylqF"
                     /locus_tag="PTC08_000083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase YlqF"
                     /protein_id="HDK5681622.1"
                     /translation="MVIQWYPGHMAKAKREVTEQLKKVDVVFELVDARIPFSSRNPMI
                     DEVIQQKPRVVIFNKKDMTNLKEMEKWYAFFREKGAYPVAVDAKHGKGLKNVEAAAIE
                     ATREKFEREKVKGLKPRAIRAMIVGIPNVGKSTLINKLANRSIAQTGNKPGVTKQQQW
                     IKVGKSLQLLDTPGILWPKFEDQLIGKKLSLTGAIKDSIVHLDEVAIYGLEFLIEHDY
                     EALLAHFKIDVPRDAEMLDWFDAIGRKRGLLQRGNEVDYEAVIEALIYDIRNAKIGTY
                     CFDLYSEWQAETDA"
     gene            6849..7634
                     /locus_tag="PTC08_000084"
     CDS             6849..7634
                     /locus_tag="PTC08_000084"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HDK5681623.1"
                     /translation="MRKGKTIQAIKAELQHLTSLEELAQHPDFQDERKGVQQAFVQRQ
                     RQLEKIALQQQKYRDMCIYETEILNVQPEALICGVDEVGRGPLAGPVVASAVILQPGH
                     DFVGINDSKQLSVTQRNLLNTSLKEQVRAWAVGVATPEEIDEHNIYVATQIAMYRAIE
                     NLSVTPTHYLIDAMKLDHLTAPQQAIIKGDAKSVSIAAASIIAKVYRDDLMAEYAKQY
                     PGYDFAQNAGYGTQKHLDSLKQYGVTPIHRKTFEPIKSMVSKF"
     gene            7726..8001
                     /locus_tag="PTC08_000085"
     CDS             7726..8001
                     /locus_tag="PTC08_000085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5681624.1"
                     /translation="MDETLRKLYKVLVHFEEKEVEITEDEAKLKKIKEEIEENLNISI
                     EDEQQADLIRLLKEHQFVVESTEDEQKIVQVPMDDDTQISFQVNDEG"
     gene            8263..9429
                     /gene="sucC"
                     /locus_tag="PTC08_000086"
     CDS             8263..9429
                     /gene="sucC"
                     /locus_tag="PTC08_000086"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006190114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-forming succinate--CoA ligase subunit beta"
                     /protein_id="HDK5681625.1"
                     /translation="MNIHEYQGKEIFRSMGVAVPEGRVAFSAEEAVEKAKELDTDVYV
                     VKAQIHAGGRGKAGGVKIAKSLSEVEAYANELLGKVLVTHQTGPEGKEVKRLYIEEGA
                     NIQKEYYVGFVIDRATDRVTLMASEEGGTEIEEVAAKNPEKIFKETIDPVIGLAPYQA
                     RRIAFNINIPKESINKAVKFLIALYNVFIEKDCSIVEINPLVLTGEGDVLALDSKINF
                     DDNALFRHKDIVELRDLEEEDPKEIEASKYDLSYIALDGNIGCMVNGAGLAMATMDTI
                     NHFNGNPANFLDVGGGATKEKVTEAFKIILGDDNVKGIFVNIFGGIMRCDIIAEGIVA
                     AVKEVELTLPLVVRLEGTNVKEGKQILKDSGLAIEPANTMAEGAQKIVKLVNEA"
     gene            9451..10356
                     /gene="sucD"
                     /locus_tag="PTC08_000087"
     CDS             9451..10356
                     /gene="sucD"
                     /locus_tag="PTC08_000087"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit alpha"
                     /protein_id="HDK5681626.1"
                     /translation="MSVFVDKNSKVIVQGITGSTALFHTKQMLEYGTQIVAGVTPGKG
                     GQVVEGVPVFNTVEEAKKETGGNVSVIYVPAPFAADAILECIDAELDLAICITEHIPV
                     IDMIKVKRYLEGKKTRLIGPNCPGVITSDETKIGIMPGYIHKKGHVGVVSRSGTLTYE
                     AVHQLTEEGIGQSTAVGIGGDPVNGTNFIDVLEAFNNDDDTKAVVMIGEIGGTAEEEA
                     AEWIKANMTKPVVGFIGGQTAPPGKRMGHAGAIISGGKGTAAEKIKTLNECGVKTAAT
                     PSEIGSTLIEAAKEAGIYESLLTVK"
     gene            10595..11482
                     /gene="dprA"
                     /locus_tag="PTC08_000088"
     CDS             10595..11482
                     /gene="dprA"
                     /locus_tag="PTC08_000088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-protecting protein DprA"
                     /protein_id="HDK5681627.1"
                     /translation="MKQLLLLLLYAGFSTQQIQSCYPKLCALTGNLPQRIQAFKSMLS
                     HMSQFHLQQKLIRLDMLNIHTIEATLHEHQIVPIMIDEPLYPPLLKEIYDPPLILFCK
                     GRLELLQHSTNSLGIVGARQHTAYTPQALETLFNTFQHFPLTIISGLAHGTDALAHHY
                     AIRHDLSTIGVLGFGHFHHYPKNTQALRQRMEQHHLTLSEYPPYTPIAKFRFPERNRI
                     ISGLSKGILITEAKEKSGALITLDQALEQNRNVYVLPGDMFNVHTKGNMLRVKEGAEI
                     VLCAQDILKDYANLNVNAL"
     gene            11566..13635
                     /gene="topA"
                     /locus_tag="PTC08_000089"
     CDS             11566..13635
                     /gene="topA"
                     /locus_tag="PTC08_000089"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002453083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I DNA topoisomerase"
                     /protein_id="HDK5681628.1"
                     /translation="MADNLVIVESPAKAKTIEKYLGKKYKVIASMGHVRDLPRSQMGV
                     DVEHDYEPKYITIRGKGPVVKDLKRHAKKAKKVFLASDPDREGEAIAWHLANILELED
                     SKENRVVFNEITKDAVKESFKHPRGIEMDLVDAQQARRVLDRLVGYNISPVLWKKVKK
                     GLSAGRVQSVALRLVIDRENEIRNFKPEEYWSIEGEFRYGKSKFNAKFLHYKDKPFKL
                     ATKDDVTVITKALDGNQFTVSNVTKKEKTRKPANPFTTSTLQQEAARKLNFKARKTMM
                     VAQQLYEGIDLKRKGTIGLITYMRTDSTRISKDAQNEAKQFIESEYGSAYLSKVTKKG
                     KQGDQDAHEAIRPTSTLRTPAEMKDYLTRDQYRLYKLIWERFVASQMAPAILDTVAVD
                     LTQNDVKFRANGQTIKFKGFMTLYVETDDDKGKEKENRLPKLEVGNEVLATKIDPAQH
                     FTQPPPRYTEARLVKTLEELKIGRPSTYAPTIDTIQKRNYVKNESKRFVPTELGEIVH
                     EQVKEYFPAIIDVDFTVNMETLLDKIADGDVAWKKVVGDFFNSFKQDVERAEKEMEKV
                     EIKDEPAGEDCEVCGNPMVIKMGRYGKFMACSNFPDCRNTKAITKPIGVTCPKCKKGD
                     VVERKSKKNRIFYGCSNYPECDFATWDKPIGRDCPKCQHYLAENKKGRATQVVCSNCD
                     YKEEVQK"
     gene            13663..14967
                     /gene="trmFO"
                     /locus_tag="PTC08_000090"
     CDS             13663..14967
                     /gene="trmFO"
                     /locus_tag="PTC08_000090"
                     /EC_number="2.1.1.74"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FADH(2)-oxidizing
                     methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))-
                     methyltransferase TrmFO"
                     /protein_id="HDK5681629.1"
                     /translation="MTSVNIVGAGLAGSEAAFQLAERGIHVNLYEMRPVKQTPAHHTN
                     QFAELVCSNSLRGNALTNAVGVLKEEMRRLDSLIIAAADHARVPAGGALAVDRHDFAG
                     YITEKLRNHPNVTVSNEEVTSIPEGPTIIATGPLTTEPLAKEIVALTGKDQLYFYDAA
                     APIIEKDSIDMDKVYLKSRYDKGEAAYLNCPMTKEEFDRFYEAALAAEVAPMNDFEKE
                     KYFEGCMPFEVMAGRGEKTLLFGPMKPVGLEDPKTGKRPYAVVQLRQDDAAGTLYNIV
                     GFQTRLKWGAQKEVIRLIPGLENVDIVRYGVMHRNTFINSPEVLSEIYEFKNRKNLFF
                     AGQMTGVEGYVESAASGMIAGINLAHRMLGKADVVFPRETMLGSMAYYISHATNNKNF
                     QPMNANFGLVPPLEQRIKDKKERYETLANRALEHLDHFKQTL"
     gene            15088..15978
                     /gene="xerC"
                     /locus_tag="PTC08_000091"
     CDS             15088..15978
                     /gene="xerC"
                     /locus_tag="PTC08_000091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017464326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine recombinase XerC"
                     /protein_id="HDK5681630.1"
                     /translation="MKQIQEQFLDMLKRERFFSDHTLKAYHDDLVQFNRFLAQEQLSL
                     TAFKYIDARNYLQTLYDMGLQRTTVSRKISTLRSFYAFWMTQDNEIVNPFVQLVHPKK
                     ERYLPTFFYTEEMEALFQTVMQDAHKGLRDRVILELFYATGIRVSELVSLKTEDVDLE
                     MCWIKVLGKGGKERIVPFGEFCRQSIEQYLAEFAPIQNVQHPYLITNLKGQPITERGV
                     RYVLNDIVKRTAGVTSIHPHKLRHTFATHLLNEGADLRTVQSLLGHVNLSTTGRYTHV
                     TNQQLRNVYLQAHPRAKKGE"
     gene            15985..16527
                     /gene="hslV"
                     /locus_tag="PTC08_000092"
     CDS             15985..16527
                     /gene="hslV"
                     /locus_tag="PTC08_000092"
                     /EC_number="3.4.25.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015365078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease subunit HslV"
                     /protein_id="HDK5681631.1"
                     /translation="MSSSIHATTIYAVRHNGGAAMAGDGQVTLGEKVIMKQTAKKVRK
                     LYNGKVIAGFAGSVADAFTLFEKFEAKLQQYSGNLERSAVELAKEWRGDKQLRQLEAM
                     LIVMDKEHILVVSGTGEVIAPDDDLIAIGSGGNFALSAGRAFKRHASHLSAREMAYES
                     LKVASDICVFTNDHITVEEL"
     gene            16542..17951
                     /gene="hslU"
                     /locus_tag="PTC08_000093"
     CDS             16542..17951
                     /gene="hslU"
                     /locus_tag="PTC08_000093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease ATPase subunit HslU"
                     /protein_id="HDK5681632.1"
                     /translation="MDRNAIKFTPKDIVDRLNEYIVGQEEAKKKVAIALRNRYRRSLL
                     DDEVKQEIAPKNILMMGPTGVGKTEIARRMAKIVGAPFLKVEATKFTEVGYVGRDVES
                     MVRDLVDVAVRLVKDQKKANVVEAATQKANDKLVKLLVPSLKKKASQNTNNPLESLFG
                     GAIPNFGQHNEEDEEEPPTEDIKTKRSEIRVQLLNGQLEEEKVKVKVEQDPGALGMLG
                     TNQNEQMQEMMNQLMPKKKVEKELPVKTARKILVDQFADEMIDHETANQEALDLAEQM
                     GIIFIDEIDKVATSNQNSGQDVSRQGVQRDILPILEGSVVKTKYGTVSTEHMLFIGAG
                     AFHVSKPSDLIPELQGRFPIRVELQDLSVDDFVRILKEPKLSLIKQYEMLLKTEEVVV
                     NFTDEAIYRLAEMAYHVNQETDNIGARRLHTILEKMLEDLSFEAPNMPHAQVDITPQY
                     VDDKLKTISTNKDLSEFIL"
     gene            17971..18744
                     /gene="codY"
                     /locus_tag="PTC08_000094"
     CDS             17971..18744
                     /gene="codY"
                     /locus_tag="PTC08_000094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-sensing pleiotropic transcriptional
                     regulator CodY"
                     /protein_id="HDK5681633.1"
                     /translation="MSLLSKTRELSSLLQKHKGISVDFKDVAQTISKVTVTNVFIVSR
                     RGKILGSSLNELLKNERIIKMLEDRHIPEKYTEKLMHVYETLSNISIDDELSVFPPEN
                     ESVFKDSKTTVFPIIGGGERLGTLVLGRVSDEFEDNDLILGEYAATVIGMEILREKHS
                     EIESEARDKAAISMAINSLSYSEKEAIDHIFEELGGKEGLLIASKVADRVGITRSVIV
                     NALRKLESAGVIESRSLGMKGTFIKVKKEAFLDELSRTE"
     gene            18911..19708
                     /gene="rpsB"
                     /locus_tag="PTC08_000095"
     CDS             18911..19708
                     /gene="rpsB"
                     /locus_tag="PTC08_000095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002448842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HDK5681634.1"
                     /translation="MAVISMKQLLEAGVHFGHQTRRWNPKMKKYIFTERNGIYIIDLQ
                     KTVKKVEEAYNFVKQVSEEGGKVLFVGTKKQAQESVKAEAERAGHYYVNQRWLGGILT
                     NYKTISKRVQRISEIEKMEEDGTFDVLPKKEVVELKKEYDRLIKFLGGIREMKSMPQA
                     LFVVDPRKERNAIAEARKLNIPIVGIVDTNCDPDEIDYVIPANDDAIRAVKLLTGKMA
                     DAILEGQQGVSNEEVAAEQDIDLTEDETAEGESTEATENTEATVESN"
     gene            19798..20676
                     /locus_tag="PTC08_000096"
     CDS             19798..20676
                     /locus_tag="PTC08_000096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Ts"
                     /protein_id="HDK5681635.1"
                     /translation="MAISAKLVKELRERTGAGMMDCKKALEATDGDIEKAIDYLREKG
                     IAKAAKKADRIAAEGITHVEVKGNEAVIVEINSETDFVARNEGFQQLVKEIANQILDT
                     KAATVEELNETTLPNGKKVSEHMTEAISTIGEKLSLRRFEIRTKTDNDAFGAYLHMGG
                     RIAVLSVVEGTTDEDAAKDVAMHIAAINPKYVSSEQVSEEELNHEREVLKQQALNEGK
                     PENIVEKMVEGRLRKYLQEICAVDQNFVKNPDQTVEAFLKSKGGKLVDFVRYEVGEGI
                     EKRQENFADEVKGQMK"
     gene            20828..21550
                     /locus_tag="PTC08_000097"
     CDS             20828..21550
                     /locus_tag="PTC08_000097"
                     /EC_number="2.7.4.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000057332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HDK5681636.1"
                     /translation="MTETSKYKRVVLKLSGEALAGDKGFGINPMIIKSIAEQVAEVAK
                     MDTQIAVIVGGGNIWRGKTGSDLGMDRGTADYMGMLATVMNALALQDSLEQLDCDTRV
                     LTSIEMKQVAEPYIRRRAIRHLEKNRVVIFAAGIGNPYFSTDTTAALRAAEVEADVIL
                     MGKNNVDGVYSADPKVDPNAKKYDRLTYIQLLQEGLQVMDSTASSFCMDNNIPLKVFS
                     IMEEGNIKRAVQGEDIGTIITK"
     gene            21568..22122
                     /gene="frr"
                     /locus_tag="PTC08_000098"
     CDS             21568..22122
                     /gene="frr"
                     /locus_tag="PTC08_000098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011275941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome recycling factor"
                     /protein_id="HDK5681637.1"
                     /translation="MKEIIQDAKTRMKKSTENLSRELAQINAGRANSNLLAGVQVDYY
                     GAPTPVQQLASINVPEARLLVVSPYDKTSLADIEKAIIAANLGVNPTSDGDVIRIMVP
                     ALTEERRKEIVKEVKKTGENAKVSIRNIRRDANDTLKRQEKDGDISEDELRNGSDEVQ
                     KITDSSIKEIDQLVADKEKDIMSV"
     gene            22366..23127
                     /locus_tag="PTC08_000099"
     CDS             22366..23127
                     /locus_tag="PTC08_000099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoprenyl transferase"
                     /protein_id="HDK5681638.1"
                     /translation="MFKKFMKKNDTQNHIEALDLHNIPEHIAIIMDGNGRWAKQRKMP
                     RIKGHYQGMQTIKTITRAASDLGVKYLTLYAFSTENWSRPDEEVNYIMGLPVNFLNTF
                     LPELIEKNVRVETVGFIDELPEKTIQAIEEAKIKTADNTGLTLIFAINYGGRAEIVHG
                     IQTLMKEMRHASDQDIDALTEQHFQKYLMTRDYPDPELLIRTSGEQRVSNFLIWQLSY
                     SEFIFNSKMWPDFDEEELKACIKTYQSRQRRFGGL"
     gene            23142..23924
                     /locus_tag="PTC08_000100"
     CDS             23142..23924
                     /locus_tag="PTC08_000100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002459284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HDK5681639.1"
                     /translation="MKVRTITTIVALIVFLPILLIGGSTWMYFTFLLALIALKELLNM
                     NRIQLLSIPGLLSALALVIMMLPQDFGEWVIVLQQKSLIAMSFIILSYTVMSKNRFSF
                     MDSAFCLMSVAYVGIGFMYFYVTREAGLEFILFGLLIVWLTDTGAYIFGRLLGKRKLW
                     PTISPNKTIEGFIGGLICSLIVPLAFMFFVDFDYPMVGLLLITVVLSMFGQLGDLVES
                     GFKRHFGVKDSGRLLPGHGGILDRFDSFMFVLPLMNIFLIQM"
     gene            23941..25071
                     /locus_tag="PTC08_000101"
     CDS             23941..25071
                     /locus_tag="PTC08_000101"
                     /EC_number="1.1.1.267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016910764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate reductoisomerase"
                     /protein_id="HDK5681640.1"
                     /translation="MKNIAILGASGSIGQQAIDVIERHPENFNLIAFTVGKNIDFAIE
                     VIQKFNPEIVAVQEESAVAQLKPYHSHIVSGREGLIEVATYNKNDLVLNSLLGSVGLE
                     PTMKAIEVGKDIALANKETLVVAGELVMAHARQHGINILPVDSEHAAIFQCLNGEEMR
                     KVKNVVITASGGSFRDLTRDQLASVTVEDALNHPNWSMGHKITIDSATMMNKGFEVIE
                     AKWLFDLDIDQIQTILHKESIIHSMVEFVDTSVMAQLGTPDMRMPIQYAFTYPERIEH
                     QAPSLNLAEVAQLNFKPMDFDRYRCLQYAYDALRIGGTMPVVLNAVNEVAVAKFLNRE
                     IAFLDIEKIIEREMAAHEVIQNPTLEQILELDYYYKTKEYEV"
     gene            25078..26358
                     /gene="rseP"
                     /locus_tag="PTC08_000102"
     CDS             25078..26358
                     /gene="rseP"
                     /locus_tag="PTC08_000102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RIP metalloprotease RseP"
                     /protein_id="HDK5681641.1"
                     /translation="MLITLIAFIIVFGVLVFVHEFGHMYFAKRAGIMCPEFAIGMGPK
                     IFSFRKDETLYTIRLLPVGGYVRMAGDGMEEQPVQPGMHVRIKTNDANEVTHIILDDQ
                     HKFQQIEALEVKQVDLTEDLFIEGITADDDARHRFNIAEKAFFVQNGSLIQIAPRHRQ
                     FTHKKPYQKFLTLFAGPLFNFILAFVLIIGLAYYEGVPVPKIAQVGEKSPAQQIGLQK
                     GDEIKKIGNHAIHRFNDVKKQLEATEGKPTTIVIERDGKTIEKEFSPKKVEIQTTKTT
                     KQTDYQLGFMPERERSLFEPLLFGIQQTIEYGKIIFVAVASMIASIFTGDFSFDMLNG
                     PVGIYKNVDTVVKTGIINLISWTAVLSVNLGIMNLLPIPALDGGRILFVIYEAIFRKP
                     ANKKAETVIIAAGAVFVLIIMVLVTWNDIQRYFL"
     gene            26383..28086
                     /locus_tag="PTC08_000103"
     CDS             26383..28086
                     /locus_tag="PTC08_000103"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HDK5681642.1"
                     /translation="MKQSKVFIPTLREVPAEAEAISHQLLLKAGLIKQNAAGVYSYLP
                     VATRVIHKISDIIRQEMERIDAVEVVMPVLQQSELWKESGRWDAYGMELMRLRDRNQR
                     EFALGPTHEEVVTSLVRDELRSYKQLPLTLFQIQTKFRDEKRPRFGLLRGREFIMKDA
                     YSFHTDEESLMETYQNMYNAYSTIFKRVGLNVRPVVADSGAIGGNHTHEFHALSAIGE
                     DTIVYSDNSDYAANIEKAEVTYYETTNTAEALQPLEKVETPNVKTAQELADFLGQPLE
                     NIIKTMVFKVNGAFILLLVRGHHEVNDVKIKDYFKTDDVAMATDDEIRNLLGASPGSL
                     GPVTDRDVKVYADQFVQSLRNLAIGANEDGYHYVNANVERDFQIEGYGDFRFILEGEP
                     LADGSGPAQFAEGIEVGQVFVLGEKYSEAMKATVLNQQGREQNLTMGCYGIGVSRTLS
                     AIIEQHHDDNGIIWPKSVTPFDVHLISVNPKKDEQRACADRLYDQLLGTYDVLYDDRN
                     ERAGVKFNDADLIGIPVRVVVGKNASEGIVEVKRRDTGDSEDVHVNDLVTHLEKLYEQ
                     I"
     gene            29003..33310
                     /locus_tag="PTC08_000104"
     CDS             29003..33310
                     /locus_tag="PTC08_000104"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001251777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PolC-type DNA polymerase III"
                     /protein_id="HDK5681643.1"
                     /translation="MTLQNQEKFKILLKQVNMLDHFDQDFIDQGQLTRVDVSPKSRKW
                     TFHIRLPRLLKYEDYAVFTHAMKESFQHIADVDWKITVNDVSQQDEYLLKYLGDCIEQ
                     TQLSPKVKGQLKQKRMIVSGDVVKILVQNDIEGNHFKKVCNGSLVRAMQRCGFNIQKV
                     VFETDESGHDEDLASLEAHIQEEDELSAREATAKIEKMKEQRAQQDDEVAVERCQIGK
                     PIQVENVRPIESIIEEEFKVAIEGVIFDINLKELKSGRHIVELKVTDYTDSLVLKMFT
                     RKNKNDLDHFKSLKEGQWVRAQGRIEEDMFIRDLVMMMSDIEAIKRTPKMDKAAEKRV
                     EFHLHTSMSQMDGVTHIGDYVAQAAQWGHDAIAVTDHNVVQAYPDAHAAAEKHGIKMI
                     YGMEGMLVDDGVPIAYKPSDIMLQDATYVVFDVETTGLSNQYDKIIELAAVKVKNGEI
                     IDKFERFSNPHEKLTETIKNLTHITDDMLKDAPEIEEVLTEFKAWVGDAIFVAHNASF
                     DMGFIDTGYERLGFGPSANAVIDTLELSRTINTSYGKHGLNFLAKKYGVELTQHHRAI
                     YDTEATAYIFVKMLAQLKALDVHNHQDINKKLSNEDAYKRARPQHVTLIVQNQTGLKN
                     LFKIVSASLVQYYYRTPRIPRSLLDEHREGLLVGTACDEGEVFTAVMQRDQSEVERIA
                     KYYDYIEVQPPALYQDLLDRDLIRDNETLVEIYERILKVGETNQIPVIATGNAHYLHE
                     HDAIARRILIASQPGNPLNRSTLPEAHFRTTDEMLDAFHFLGEERAHQIVVENTRALA
                     ERIEKVVPIKDKLYTPNMEGANEEIREMSYRHAKQLYGEELPQIVIDRLEKELESIIG
                     NGFAVIYLISQRLVKKSLEDGYLVGSRGSVGSSFVATMTEITEVNPLPPHYICPSCKK
                     SEFFDDGSVGSGFDLPDKTCECGTEMIKEGQDIPFETFLGFKGDKVPDIDLNFSGEYQ
                     PKAHNYTKVLFGEEYVYRAGTIGTVAEKTAFGFVKGYLNDQGIHKRGAEVDRLVKGCT
                     GVKRTTGQHPGGIIVVPDYMDIFDFTPIQYPADDQSSSWMTTHFDFHSIHDNVLKLDI
                     LGHDDPTMIRMLQDLSGIDPKTIPVDDQQTMRIFSSPEALGVTEEEILAKTGTFGVPE
                     FGTGFVRQMLEDTKPTTFSELVQISGLSHGTDVWLGNAQELIRSGTCTLSSCIGCRDD
                     IMVYLMYAGLEPSLAFKIMEAVRKGKGLTEEFEQVMKENNVPDWYMDSCKKIKYMFPK
                     AHAAAYVLMAVRIAYFKVHHPLYYYASYFTVRASDFDLITMVKDKDSIRQTVKDMYAR
                     YMDLGKKEKDVLTVLEIMNEMAHRGYRMQPVNLEKSQAYEFIIEGDTLIPPFVAVPGL
                     GENVAKRIVEAREEGPFLSKEDLNKKAGVSQKIIEYLDSLGSLPNMPDKAQLSIFDM"
     gene            33435..33902
                     /gene="rimP"
                     /locus_tag="PTC08_000105"
     CDS             33435..33902
                     /gene="rimP"
                     /locus_tag="PTC08_000105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020363146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimP"
                     /protein_id="HDK5681644.1"
                     /translation="MSKVTEQVETIIQPVLDELNFELVDVEFAKEGRDHYLRIAIDKP
                     GGVDLNDCTLASERISEVMDEQDPIPQAYYLDVSSPGAERPIKNEKDFQNAIEQPIFV
                     SLYAPIEGDKEWLGHLKSVTEDAITMEVKVKAKTKTITIPRDKIAKARHAVML"
     gene            33923..35101
                     /gene="nusA"
                     /locus_tag="PTC08_000106"
     CDS             33923..35101
                     /gene="nusA"
                     /locus_tag="PTC08_000106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusA"
                     /protein_id="HDK5681645.1"
                     /translation="MESNELLLATEYLEKEKKIPREVLVDAIEAALITAYKKNYDSAR
                     NVRVELNLDSGTFRVISRKEVVEEVFDHREEIDLSTALVKNPAYEIGDIYEEDVTPKD
                     FGRVGAQAAKQAVMQRLRDAEREILYEEFIDKEDDIMTGVIDRVDHRYVYVNLGRTEA
                     VLSEAERSPNETYLPNERIKVYVNKVEQTTKGPQIFVSRSHPGLLKRLFEQEVPEIFE
                     GTVEVKSVAREAGDRSKISVYSENPDIDAVGACVGAKGARVEAVVAELGGEKIDIVQW
                     SEDPKVFVRNALSPSQVIDVIVDEENQSTTVIVPDYQLSLAIGKRGQNARLAAKLTGW
                     KIDIKSETDAKALGIGEKETTTVETEPVAMTAEELDLEATTDEHIEDNASLEDESKEN
                     "
     gene            35113..35400
                     /locus_tag="PTC08_000107"
     CDS             35113..35400
                     /locus_tag="PTC08_000107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlxR family protein"
                     /protein_id="HDK5681646.1"
                     /translation="MKKKKIPMRKCILSNEMKPKKEMIRVVKNKEGEISADVTGKMPG
                     RGAYVSKDIALIERAQQAHKLEDYFKASEESLEPVYKEIIRLIYREEIPTK"
     gene            35397..35702
                     /locus_tag="PTC08_000108"
     CDS             35397..35702
                     /locus_tag="PTC08_000108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlxQ family RNA-binding protein"
                     /protein_id="HDK5681647.1"
                     /translation="MNEQQFLNFLGLAMRAGKVKTGESVILTEVKKRRLKLVLIASDA
                     SESTKNNIINKCNSYQTPYRIVSNRNDLGDALGKGARVNVGITDQGFAKKLMSMIDE"
     gene            35719..37875
                     /gene="infB"
                     /locus_tag="PTC08_000109"
     CDS             35719..37875
                     /gene="infB"
                     /locus_tag="PTC08_000109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HDK5681648.1"
                     /translation="MSKQRIYEYAKDLNIKSKDVIDELKKTGIEVSNHMQTLEDDQVK
                     ALDKVFKKNQAPKQQKEQKNTQSNHKNQKQGNNQKQGNNQKQGNNQKQGNNQQQKGKN
                     NGPKQNKKNNKGNKNKKQNKKNAPQQPSEPKELPSKITYTEGITVGELSDKLGVDSSE
                     IIKKLFLLGIMANINQSLDIEALELVASDYGVELEEEVVIDDNDLSIYFEDVEEDEDA
                     IVRPAVVTIMGHVDHGKTTLLDSIRNTRVTEGEAGGITQHIGAYQITNNGKKITFLDT
                     PGHAAFTTMRARGAQVTDITILVVAADDGVMPQTIEAINHAKEADVPIIVAVNKIDKP
                     TANPDRVMQELAEYNLIPEDWGGDTIFVPLSALSGEGIDDLLEMLILVSEVQELKANP
                     NKAAVGTVIEAELDKSRGPAASLLVQNGTLNVGDALVVGNTHGKVRAMVNDLGKRIKT
                     AGPSTPVEITGLSDVPQAGDRFVVFKDEKKARRIGEAREQENIIQQRQESKNVTLDNL
                     FEQMKQGEMKDLNVIIKGDVQGSVEALAASLMKIDVEGVNVRIIHTATGAINESDVTL
                     AHASNGIIIGFNVRPDAGAKRAADAENVDMRLHRVIYNVIEEIESAMKGMLDPEFEEK
                     VIGQAEVRQTFKVSKVGTIAGSYVTEGKITRDAGVRVIRDGVVLFEGELDTLKRFKDD
                     VKEVAQGYECGITVAKFNDIKEGDIIEAFVMVEVER"
     gene            38090..38329
                     /locus_tag="PTC08_000110"
     CDS             38090..38329
                     /locus_tag="PTC08_000110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5681649.1"
                     /translation="MEKLLKDFFITFIIGVAGILLMYWIGYVPPNPRIFNVVDKITVT
                     HFFENRIYDNWLMIAFLFALVVTVFDVGSSKKEDK"
BASE COUNT        13001 a         6444 c         8420 g        10756 t
ORIGIN      
        1 gataaaaaaa tatttgtttg gtgaatttgg aatgtgcgat agggaatgta tgataaatca
       61 aaagcgatgc ctcgacttaa ctcaatagta gctaaaattt gtgaatttgc tcaattctaa
      121 catactgagt cgacgaagca tcgcgcattc ggttaatatt tgattgttcg acggagccac
      181 cagcgataaa cgatggcacc tacaacacct aatatagtca gcaggcttaa aatatgccaa
      241 tatggtagtg aataggtcac cgttacgtca cgatcccctt tttcgacagg cacaacggtc
      301 attaagccat tgccttgaag tacaggtctt ggttcaccat tgacttcagc gtgtaaacct
      361 tgtctgtaag gtatcgggag tacaaggtat tggtctttgt ctgttttgaa atgtgcatgg
      421 atgtgttgac gatcctgctc aatttgtacg ggttcgactt ctgaagcggc tcgtttaagc
      481 gtactgtaat cttcgccgta aatgccttta agctcaaaac gataatcacc ttgttttaac
      541 ttcagttgca tcgtgtcacg aaccggtaca cgcacggtaa ttggtgtgat aaaacgacga
      601 taggcatagt tgagtttggt acgacgttga taaaagtcat ccagttttaa atagtgcggt
      661 tgattcggtg ataacagttc gatgtccatc tctacataat agtcgttgta ccgtgctttt
      721 acattttgag gtaaatcgat attcacacca ccgtcttttt cgtgaacggt taaaatttta
      781 ccattcatcg atgcatctcg aggtgtcact gtcgctgtgg ataacaagtt tggattcgct
      841 tggaatgttt cattggcttg ttgatgatgg agtactacac cttgtaacat tgcttgttca
      901 cgatctaacg gtgattttaa atctttggca tcataaacac gtgaggtcag atgtgcgctt
      961 ggataatcga ttgtttgatg cgaatggatc caagcatggt tgtcatcttg aatcgtttgc
     1021 acttttttca ttccatacgg cattgtacgg tcgggtgcat ctttaatacg gtctgtcaca
     1081 ccccataatg catataaatt ttcacggtca cctaataaac gataggtact gttactgtca
     1141 tattccatgt taatttgcat ttgacggtca tagtaatcaa aaatattgcc gtcgaaaatg
     1201 ctagaataca atgcgacccc attaaagtcg taaatcatac tagagttcac agcgtaagtg
     1261 ctcatataat cgatacgttg taacggtgac tggtcatgct ttatcgtatc gatctgctgt
     1321 tgtaaagttg cactatgata attcggtgct ttcatatcgt ccatcgtcga ctgatacggg
     1381 gcaatattgt tgtgatgata gttcagtaat aaaatgaatt gttgcacgat aaagagtaat
     1441 aacatgacgc cctgcatcca acctgtcagt ggacgacgtt ggtaaatatg atatgcaaca
     1501 accattaaaa tgatgacact gacaagcatc caccacatgg ctccgcgtga aaagaatact
     1561 gttgcaatcg caagtaccgc aatcggaatg agtgattgta gaaatgattg tatagtcaac
     1621 tcggtcaaat atttgagcca taatgcgatt aatgcacttg ttgttaatgc aaggatatac
     1681 acccaacgac gctgggggaa tgaaaagccg ttaaatgcac tgtcaaaata gggtgaaaac
     1741 gaaccgatta acaaaatcca agtgaaaatc gcgaccattt tgtaatgata atgacgatac
     1801 agcttgaacg aaaacagtgc gacgagtgca ataaacgtca ctgtaatgta aaaaccattt
     1861 gtaaagatat ggtacttttg agaaaagtcg ataatcggtg aaataaaaac atcattcgtt
     1921 tgacgatcat tatttaaaaa tgaccggaca ccggttaaaa aacctaacac tgcgatacac
     1981 aaactacaaa ggacagctgg aatcagtaaa tacaattttt gccagcgacc gacttgatca
     2041 tcacgatgcg gccaaatcat gcgataaact aagtacactg ttaaaataat tgcttcataa
     2101 taactaaagt aaaagttaga aaataatgtt aatgcaattg cgataataaa taatccgatg
     2161 cgccgacttc tgaaaaagcg ttcaattccc caaattgaaa ggggtaagta aattaatata
     2221 tcgccaaaaa atgaccatgt aaaattaaag taatagacca cagtagaagt ggcataaagg
     2281 atggcaccta aatagcaata aaagcgctcg agtttaaatt gacgaaacat gccataagcg
     2341 gcaagaaatg taatgacaca tcgcaaatac gccgtgaaaa tttggttgcc tggccaaaat
     2401 gcaatgtcac tcggattgat atgtaatagc cattgcccga gacctacaaa aatgaagttc
     2461 acatacatca tcggtgaggt cgtgtaatag taggcgaggt ctgtaaaata atcaccaccg
     2521 agtccaaaac cattgtcata aagcgagcgg agatgagaaa aatgttcata caaaaagcgt
     2581 tggaaaggca tcatttgttt aaaaccatcg ccgtttccac tataaatgat gccgtcatgt
     2641 atgaaacgaa acgcgaccgg tacgtatacg atacatccga cgaggcaggc cgcaataaag
     2701 acgattaaaa cgcgtgataa atgacttttt tgtttctgtt ttttcaatgt ttttcactct
     2761 ttctcgattg tttatgttga taccagcgac tgtaaatgat gctgctgata atagagataa
     2821 tggacaagac gaccatcgtg ttgaaataag gtggccggta gtgaatgaca atttgtttcg
     2881 catgcggccc aattttgatc cccgtcatca tgccattgac cttttgtggt gtgacagcgt
     2941 gtccgtcaac gatagcggtc atacctttac gataagggat attgatgacc gccacacccc
     3001 cagaatgttc ggctaactga actttaatct ttccttgatg tgcttcatag tgatgagggg
     3061 cttgattatg atatgcccgt tttaacgtat cgtaatcttc accgtataaa cattgtatat
     3121 tgaattggta cgatcctgtt ggtgatatac cgagatgaat ttggccattg ttgtcaggtt
     3181 gcacacgata cagcaaagtg ttttgacctg tacgatattt cgaattgtta aataggcggt
     3241 gatttttata gccactgaca tcgagtgtgc tattactatc tggcgcatta cgtttaaaat
     3301 agacaacaag ataaaagtct tcgtactgtt cgcgcaatgt ttctggaagt tgcagcgtca
     3361 caccgccatt cagttcagta actgttaacg tatctgagcg cgtccattgg gcatcatagg
     3421 tcgtcatttc aacttcatga ataaggtttt gcgctttttt aggatatgtt tgaccttgat
     3481 gatctaatac gacgccatct aacatcgcat gttcacgatc aatcggtgtc gttaaatctt
     3541 ccccgttata atattgatgg ctcacacgta cagcaggtaa tggatattga ttttcgtata
     3601 tgacatattg cccatattga tgcacttttt caaaattcgc aggttgctgg tgctgatagt
     3661 ctttttccat aaggtagcgc acggacaaaa gactcgcaat gtttgagcgg cttcctgtag
     3721 attgataacg gctgacagac tcttctttta agttaatcat taaatagcga taataaaatt
     3781 caatgagctg tcggtcgaaa atactcgaat ataaacttaa ccctttaaaa tgttgataca
     3841 tcggtgtatt atcctgctca ttcacacgcc aatcgatgcg ttcatcttcg tgtttttcgg
     3901 tattcatttg gtcgaccaac gactgctgta aaggtgtatt gtacaaactg gcctgtgcat
     3961 aaaacgtatt ggcacgtttt tcatgatctg tatggaaaac ttgattttta ataaacactg
     4021 ccgatatcgc aaattgtaag ataatgagtg cgcatgcaaa gcttactgtt acgaaatgac
     4081 gaggcttatt atcatgacgt gcaatcgtta agacaagtaa tccgatgaga aatacgatag
     4141 gaatgagacc aacccaccag acgacccgat catacacgta tgcactgatg aaaacgacag
     4201 ccattgccgg tatcgcggtt aagctatatg taaggcgtga taatgatttg aaatgttgta
     4261 cataagtcgc aactaaacca cttgtcacaa atgctaataa gtaatgccaa cgcttttgtg
     4321 gtgctgaaaa gccgttgaaa atactgtcca catacggtat aaatgctgcg ataatggtta
     4381 aaatgctcag tattgcgaac aatctaaagt aaaagtgacg gtacaatttg aatgagagta
     4441 acgcttgaat cacgacaaat gaaatgacga ttaaatagtt gtcataaaaa agattcgtat
     4501 tttcattgaa cagttcaatg aatggaatgt caccttcaaa agggatacgt tgattgttga
     4561 aaaagctacg tgccccatga aagaaaaaga ataaacttga accgacacct aaaacagctg
     4621 caacgccaag tggtagaaca gttttcatgc ctcttttttg atcatcagga tgtgcgtgaa
     4681 acatgcgcag gttatagtaa atgagtccca tcaacacttg ataataggcg aagtaaaaat
     4741 tgttcgcaaa agaaatcgct gtcatgataa taaatagacc taactgacct gatttcaaaa
     4801 aacgttcaat actgagcaag agtaatggta ataaaataaa tacatcacta aaaaaaggcc
     4861 agtacacggt gaatcggaaa taaaggggcg acatggcgaa taacaccgca aatacgaccg
     4921 atgagacgtg ttgaagtttt aactgacgtg catagtaata cgttccaatc atggcaccgg
     4981 tacattttaa aattgaaaca acccatgctt gggtgaacca atacatcatg tctttagaat
     5041 ctacaagatg tgtaatggat aaaagccatg tgatgcctgc agttaaaata aatatgaagt
     5101 ttgtcgaaaa ataatacgat agatctgtaa aaaaatcacc gccaagtcca aaatcggtgg
     5161 catagaaaaa ggtaccttca gaccattttt cgtataaaaa catctgaatc ggtaccattt
     5221 gttccatacc gtcattagga cccgtaaata acagaccgtc tgcaaaaaaa cgatacaaaa
     5281 tataagcatg ccctataagt gacatgcata aaaataaaac aataaagctg atgggttgaa
     5341 tgtaacgtct cataatccga acctcacttt gattatcgat ctttaagaat aaacttagat
     5401 aaaatataag taatcggtat cgtaacgatg agtcctacaa acggtgcaag ggctgcgttg
     5461 aaatgcatga ggtccacaaa aataaaaatg agtaacgttt gtgtccccat attgaccact
     5521 tgtgtgagtg gaaaggctag aaatttcttt aacgtcggtc gtactttata gacaaagtaa
     5581 caatttaaat agaaagaaac gacgaacgaa aaaatgaaac cgacaatatg gctgatgagg
     5641 taatggacat caaataaacg caataatatt aagtatacga tataataatt cagtgtatta
     5701 ataccaccga ctaatacaaa acggaaaatt tcaaaaaaac gtgctgagtt caccatttaa
     5761 tatacctacc tttattcaac gatatgtgat tgtaaatagc tattgacgat aaagttgatt
     5821 atacttaaag tggtgtatat caaattttgt tatacaatac atgatgcgga tgctttaatt
     5881 cgtcatgcaa tatcatatgt ttatatcttt aaaactaaca attaatataa catataacat
     5941 taaaaaaaac gatttggaag aataattaag aggagttaaa actatggtga ttcaatggta
     6001 tccaggtcat atggccaaag cgaaacgaga agtaacggaa caactgaaga aagtggatgt
     6061 ggtctttgaa ttagttgatg cacgcattcc ttttagttca agaaacccta tgattgatga
     6121 ggtgattcaa caaaaaccac gcgtcgtcat tttcaataaa aaagatatga ccaatttaaa
     6181 agaaatggaa aaatggtatg cgttttttag agaaaaaggg gcttatcctg tagccgttga
     6241 tgcgaaacat ggtaagggct tgaaaaatgt agaagcggct gcgattgaag caacacgtga
     6301 aaagtttgaa cgtgaaaaag taaaagggtt aaaaccgaga gccatacgcg caatgatcgt
     6361 cggtatccct aatgtgggga aatcgacttt gattaacaag ttagcgaacc gttcgattgc
     6421 acaaacaggg aataagccgg gtgtaacgaa acaacagcaa tggattaaag tgggcaaatc
     6481 tttacagttg ttagatacac cggggatttt atggccaaaa tttgaagacc aactgattgg
     6541 taaaaagctg agtttaacag gtgcaattaa agatagcatc gtccatttag atgaagtggc
     6601 gatttacgga ttagaatttc tcattgaaca tgattatgaa gcattgctcg cccattttaa
     6661 aattgatgtc ccgcgagatg cagaaatgct ggattggttt gatgcgatag gacgtaaacg
     6721 tgggctgtta caacgtggaa atgaagtgga ttatgaagcg gtcattgagg cactgattta
     6781 tgacatcaga aatgcaaaaa tcgggacata ttgctttgac ttatattctg agtggcaggc
     6841 tgagacggat gcgtaaagga aaaacaattc aagcgattaa agcagaattg caacacttga
     6901 cgtcgttaga ggagttagcg caacatcctg atttccaaga tgaacgaaaa ggggtccaac
     6961 aagcttttgt gcaacgtcaa cgtcaacttg aaaaaatagc gttacaacaa caaaaatatc
     7021 gtgacatgtg tatatacgaa acagaaattt taaatgtgca accagaggca ttgatttgtg
     7081 gtgtagatga ggttggacgc gggcctcttg ctggacctgt cgtcgcaagt gcagtcattt
     7141 tacagcccgg acatgacttt gtaggtatta acgactccaa acagttgtct gtcacacaac
     7201 ggaatttgtt gaacacgtca ttaaaagagc aagtgcgtgc ttgggcagtg ggggttgcaa
     7261 cacctgaaga aattgacgaa cacaatattt atgtggcaac acaaatcgcg atgtaccgtg
     7321 cgattgaaaa tttgtcagtc acaccgacac attatttaat tgatgcgatg aagctcgatc
     7381 atttgactgc accacaacaa gcgattatta aaggagatgc gaagagtgtg tccatcgctg
     7441 cagccagtat tatcgcaaaa gtgtatcgtg atgacttgat ggcagaatat gcaaaacaat
     7501 atcctggtta cgattttgca cagaatgctg gttatggtac acaaaaacat ttagatagtt
     7561 tgaaacaata cggcgtgaca cctattcaca ggaagacttt cgagcctatt aaatcaatgg
     7621 tttcaaagtt ttaaacgaaa tagatcagca tataaaaagt tttcaaaaag ttagaattat
     7681 gttttactag tagtaatttc taataaagaa aggaataaga aactcatgga tgaaacatta
     7741 cgaaaattat ataaagtgct cgtacacttt gaagaaaaag aagttgaaat tactgaagat
     7801 gaagcgaagt taaagaagat taaagaagag attgaagaga atttgaatat ttcgattgag
     7861 gatgaacagc aggcggattt gattcgtttg ttgaaggagc atcagtttgt ggtggagtca
     7921 actgaggatg agcaaaagat tgtgcaagta ccgatggatg atgatacaca aatttcgttc
     7981 caggtgaatg atgagggtta gtgtatcata ggctaggatg aggcggagtt gtttccgttt
     8041 tgtcctattt tttattttag gaacattttg tttgcgttaa actctgtgtg ctaaaaaata
     8101 atttttatca tttgatatct gctgaaacaa tgtgttgaat gtgatgaaag aagtgttagc
     8161 ctttataaaa catcgtgata cgagagggaa tctgtttaca atagcgctta catttcctat
     8221 aattgtactt gaacttaacc ttaagaaaca ggaggatgga gtatgaatat ccatgagtat
     8281 caaggaaaag aaatttttcg ctcaatgggc gtagcagtac cagaagggcg tgtggctttt
     8341 tctgctgaag aagctgttga gaaagcgaaa gagttagaca cagatgtata tgttgttaaa
     8401 gcgcaaatcc atgcgggggg acgtggtaaa gctggtggtg tgaaaatcgc taagtcttta
     8461 tcagaagttg aagcatatgc aaatgagttg cttggaaaag ttctcgtgac acaccaaaca
     8521 ggtcctgaag gtaaagaagt gaagcgtctt tacattgaag aaggtgccaa tatccaaaaa
     8581 gaatattatg tcggctttgt tattgaccgt gcgacagacc gtgtgacttt aatggcgtct
     8641 gaagagggtg gcactgaaat tgaagaagtt gcagcgaaaa accctgaaaa aatcttcaaa
     8701 gaaacaattg atccagtgat tggtttagcg ccttatcaag cacgccgtat cgcgtttaac
     8761 atcaatattc ctaaagaatc aattaacaaa gcggttaagt ttttaattgc tttatataat
     8821 gtgttcattg aaaaagattg ttcaatcgtt gaaattaatc cacttgtttt aacgggtgaa
     8881 ggtgatgttt tagcacttga ctctaaaatc aactttgatg acaacgcatt attccgtcac
     8941 aaagatatcg ttgaattacg cgatttagaa gaagaagatc caaaagaaat tgaagcttct
     9001 aaatacgatt tatcttatat tgcattagac ggtaatatcg gttgtatggt gaacggtgca
     9061 ggtttagcga tggcaacaat ggatacgatt aatcacttta atggtaaccc agctaacttc
     9121 cttgacgtag gtggcggtgc aactaaagaa aaagttactg aagcgttcaa aatcatttta
     9181 ggcgatgaca acgttaaagg tattttcgtt aatatctttg gtggtattat gcgttgtgat
     9241 attatcgctg aaggtattgt agcggcagta aaagaagtgg aattaacatt gccattagtt
     9301 gtacgtcttg aaggtacaaa tgttaaagaa ggtaaacaaa tcttaaaaga ctcaggttta
     9361 gcaattgaac cagcgaatac aatggctgaa ggtgcacaaa aaattgttaa acttgtaaac
     9421 gaagcgtaag gaaaggatgg gacaactaca atgagtgtat ttgtagataa aaattcaaaa
     9481 gtaatcgtac aaggtattac agggtcaact gcccttttcc atactaagca aatgttggaa
     9541 tatggtacgc aaattgttgc aggggtaaca ccaggtaaag gtggacaagt tgttgaaggc
     9601 gtacctgttt tcaatactgt tgaagaagcg aaaaaagaaa ctggcggcaa cgtatctgtt
     9661 atttacgtac cagcgccatt tgcagctgat gcgattttag aatgtatcga cgctgaatta
     9721 gacttagcca tttgtattac tgaacatatt cctgttattg atatgattaa ggttaaacgt
     9781 tatcttgaag gtaaaaagac gcgtttaatt ggaccaaact gcccaggtgt catcacttca
     9841 gatgaaacga aaattggtat tatgccagga tacatccaca aaaaaggcca tgtcggcgtt
     9901 gtttcacgct ctggcacttt aacatatgaa gcggtacatc aattaactga agaaggtatc
     9961 ggccaatcta cagctgtagg tatcggtggg gacccagtta acggtacaaa ctttatcgac
    10021 gtgttagaag cattcaacaa tgatgatgac acgaaagctg ttgtgatgat cggtgaaatt
    10081 ggtggtacgg cagaagaaga agctgctgaa tggattaaag cgaacatgac caaacctgtt
    10141 gtcggcttca tcggtggtca aacagcacct ccaggaaaac gcatgggtca cgctggtgca
    10201 atcatttcag gtggtaaagg gacagctgca gaaaaaatca aaacattaaa tgaatgtggc
    10261 gttaaaacag cagcaacacc ttctgaaatc ggttcaactt taattgaagc cgctaaagaa
    10321 gcaggtattt acgaatcatt actgactgtt aaataattga atttcaatac aaacatcagc
    10381 ggtgtgtcag gcaactgaac tgatacaccg cgattttgaa gctattcata catgggctgt
    10441 taatgtatca tcactaacag ggcgtgtgat gatagcttga ttttgatatc cttttttatt
    10501 cccctttaaa catgccgttt atgtttggca caacttcttt tattttccgc atcatccatc
    10561 acgcttattc tacatcaaga ggtgaccact acgtatgaaa caattactac tattattact
    10621 gtacgctgga ttttcaacac aacaaatcca atcctgttac cctaaacttt gtgctttaac
    10681 aggaaatcta cctcagcgca ttcaagcctt caaatcaatg ctttcacaca tgtcgcaatt
    10741 ccatttacaa caaaagctca tacgactcga tatgcttaat attcatacga ttgaagcgac
    10801 gttacatgaa catcaaattg tcccgattat gatagacgaa ccgctttatc caccactgtt
    10861 aaaagaaatt tatgatcccc cgttgatttt attttgtaaa ggacgacttg aactgcttca
    10921 acattctact aatagtcttg gcattgtagg cgcaaggcaa catacagcat acacgccaca
    10981 agcgcttgaa acacttttta acacatttca acattttcca ctaacgatta tttcagggct
    11041 ggcacacggt acagacgcac tcgcacatca ttatgcgatt cgacatgact tgtccacgat
    11101 cggtgtgctc ggttttgggc attttcatca ttatcctaaa aacacacaag cattacgcca
    11161 gaggatggaa caacatcatt tgactctaag cgaatatcca ccttacacgc ctattgctaa
    11221 atttagattt cctgaacgca atcgcattat tagtggtttg tcgaaaggaa tacttatcac
    11281 tgaagcaaaa gaaaaaagtg gcgcgctcat tacgttggat caggcattag aacaaaatcg
    11341 taatgtttat gtactgccgg gggatatgtt caacgtgcat acgaaaggta atatgctacg
    11401 tgtcaaagag ggggcagaaa ttgtattatg tgcccaggat atattgaaag attatgcaaa
    11461 tttaaatgtt aacgctttgt gaaataaata caaaagattg acaaatataa aaataaccgt
    11521 ttatcattta tctttgtaaa cagaaaaagc aagggggtaa ctactttggc agataatctt
    11581 gtcattgttg aatcgcctgc aaaagcgaaa acaatagaaa aatatttagg caaaaaatac
    11641 aaagtgattg catcaatggg tcatgtgaga gatctaccac gtagtcaaat gggtgtagat
    11701 gttgaacatg actatgaacc taaatatatt actatccgag gtaaggggcc agttgttaaa
    11761 gatttgaaga gacatgcgaa aaaagcaaaa aaagtttttc tcgcaagtga ccccgatcgt
    11821 gaaggtgaag caattgcatg gcacttggca aacattttag aactagaaga tagtaaagaa
    11881 aatcgcgtgg tttttaacga gattacgaaa gacgctgtaa aagaaagttt taaacaccca
    11941 cgcggtatcg aaatggattt agtcgatgcg caacaagctc gacgtgtatt ggaccgttta
    12001 gtaggttata atatttctcc tgtattatgg aaaaaagtaa aaaaaggttt atcagctgga
    12061 cgtgtacaat ctgtagcatt acgtcttgtg attgaccgtg aaaatgaaat tcgtaacttt
    12121 aaacctgaag aatattggtc gattgaaggc gaatttcgtt atggaaaatc aaagtttaat
    12181 gccaagtttc ttcattataa agataaaccg ttcaagttag cgacgaaaga tgatgtgaca
    12241 gtcattacga aagcgttaga cggtaatcaa ttcacagtat ctaatgtgac gaaaaaagaa
    12301 aaaacacgta aacctgccaa cccatttaca acctccactt tgcaacaaga agcggctcgg
    12361 aaattaaatt tcaaggcgcg taaaacgatg atggtggcac aacaacttta tgaaggtatt
    12421 gacttgaagc gtaaaggtac aattgggctt attacttata tgagaacgga ttcgacccgt
    12481 atttcgaaag atgcgcaaaa tgaagcgaaa caatttatcg agtcagaata tggtagtgcg
    12541 tatttatcta aagtgacgaa aaagggtaaa caaggtgacc aagatgccca tgaagcgatt
    12601 cgtccaacga gtacgttaag aacacctgct gagatgaaag actatttaac acgtgatcaa
    12661 tatcgcttgt ataaattgat ttgggaacgc tttgtggcga gtcaaatggc acctgcaatt
    12721 ttagatacgg ttgctgtcga tttaacacaa aatgatgtga aatttagagc aaacggtcag
    12781 acgattaagt ttaaaggttt tatgacactg tatgttgaaa cagatgatga caaaggtaaa
    12841 gaaaaagaaa atcgtttgcc aaagcttgaa gtcggtaatg aagtgttggc gactaaaatt
    12901 gatccggcac aacactttac acaaccgcca ccacgctata cagaagcacg tctcgttaaa
    12961 acattagagg aacttaaaat cggtcgtcct tcaacatatg cgccaacgat tgatacgatt
    13021 cagaagcgta attacgtgaa gaatgaaagt aaacgtttcg tcccaactga attgggagag
    13081 atcgtgcatg aacaagtgaa agagtacttc cctgcgatta ttgatgtcga tttcactgtg
    13141 aacatggaaa cgttactcga taaaattgcg gatggcgatg tggcttggaa aaaagtggtg
    13201 ggtgactttt tcaatagctt taaacaagac gttgaacgcg cggaaaaaga aatggaaaag
    13261 gttgaaatta aagacgaacc cgcaggcgaa gattgtgaag tgtgtggcaa tccaatggtc
    13321 attaaaatgg gacgctacgg taagttcatg gcatgttcta atttccctga ttgtcgtaat
    13381 acgaaagcga ttacgaaacc gattggtgtg acatgtccga aatgtaaaaa gggcgatgtc
    13441 gttgaacgta aatctaagaa aaaccgtatt ttctatggtt gttcaaatta tccagagtgc
    13501 gattttgcta cttgggataa accgattggc cgtgattgtc cgaaatgtca acattacttg
    13561 gcagagaata aaaaaggacg tgcgacacaa gttgtatgtt cgaattgtga ttataaagaa
    13621 gaagttcaaa aataatatgt gtattaaagt gaggtaaaaa ccatgacatc tgttaatatt
    13681 gtcggcgctg gtttagcagg gtctgaagca gcatttcaat tggcggaacg tggcattcac
    13741 gtgaaccttt atgaaatgcg accagtgaaa caaacaccgg cgcatcatac gaatcaattt
    13801 gctgaactcg tatgttccaa ttcattaaga gggaacgcgc ttacgaatgc tgtcggtgta
    13861 ttaaaagaag aaatgcgccg tttagattca ttgattattg cagcagcgga tcatgcccgt
    13921 gtacctgcgg gtggtgcgtt agctgtagat cgccatgact ttgcaggata tatcactgaa
    13981 aagctaagaa atcatccgaa tgtgactgtg agtaatgaag aggtgacgtc tatccctgaa
    14041 ggtccaacga ttatcgcgac cggtccatta acgacagaac cacttgcgaa agaaatcgtt
    14101 gcattaacag gcaaagacca actgtatttc tatgacgcag ctgcaccgat tattgaaaaa
    14161 gactctatcg atatggataa agtgtatttg aaatcacgtt acgataaagg tgaagccgct
    14221 tatttaaact gtccaatgac taaagaggag tttgaccgtt tttatgaagc cgcgctcgca
    14281 gctgaagtcg caccgatgaa tgatttcgaa aaagaaaagt attttgaagg ttgtatgccg
    14341 tttgaagtga tggcaggcag aggtgaaaaa acgttactgt tcggaccgat gaagccagtc
    14401 ggattagaag acccaaaaac tggaaaacgt ccttatgctg tcgttcaatt aagacaagat
    14461 gatgctgcag ggactttgta caacattgta ggtttccaaa cgcgtttgaa atggggcgca
    14521 caaaaagaag tgattcgtct tattccagga cttgaaaacg tcgatattgt aagatatggc
    14581 gtgatgcacc gtaacacatt tatcaactct ccagaagtgt tgagtgagat ttatgaattt
    14641 aaaaatcgca aaaacttatt ctttgcaggt caaatgacag gcgtggaagg ttacgtggaa
    14701 agtgctgcaa gtggtatgat tgcgggaatt aacttagcgc atcgtatgtt aggtaaagca
    14761 gatgtcgtct tccctcgtga aacaatgctc ggtagtatgg cgtattacat ttcacatgca
    14821 acgaacaata aaaatttcca accgatgaat gcgaactttg gtctcgtacc gccgcttgaa
    14881 caacgtatta aagataaaaa agagcgttat gaaactttag caaatcgtgc attagaacat
    14941 ttggatcact ttaaacagac gttgtaatga aactgtaatt aatggcaaaa taagcaaaat
    15001 tttgataaat ataaaaattc aatgtataat caatgcagtt cccctcatca ttatgctaca
    15061 atgctaatga tggaggggtt ttttgaattg aaacaaatcc aagagcaatt tttagatatg
    15121 ttaaaaaggg aacgtttttt ctcagaccac acgttgaagg cttatcatga tgatctcgtc
    15181 caatttaatc gatttcttgc acaagaacaa ttatcgctca cggcattcaa atatatagat
    15241 gcaagaaatt atttacagac gctttatgat atgggacttc aacggactac agtatctcga
    15301 aaaatatcta cattacggag tttttatgca ttttggatga cgcaagacaa cgagatagtg
    15361 aatccatttg ttcagttggt ccacccgaaa aaagaacgat atttgccaac gtttttttat
    15421 actgaagaga tggaagcctt gtttcaaacg gtcatgcaag acgcacacaa aggtttgaga
    15481 gacagagtga ttttagagtt gttttatgca acaggaattc gtgtttctga attagtgtct
    15541 ttaaaaacag aagacgttga ccttgaaatg tgttggatta aagtgttggg taagggtggc
    15601 aaagaacgta tcgtaccttt tggagaattt tgtagacaaa gtattgaaca gtatttggcg
    15661 gagtttgcac cgattcaaaa tgtacagcac ccatatttaa ttacgaattt aaaaggtcag
    15721 ccgattacag aacgaggtgt gcgttatgtg ttaaatgata ttgtcaaacg tacagcgggt
    15781 gtcacatcga tacatccaca taaactgcga catacatttg cgacacattt gttgaatgaa
    15841 ggggcagacc ttagaactgt tcaaagtcta cttggacatg ttaatttatc aacaacagga
    15901 cgttacaccc atgtgacgaa tcaacaatta agaaatgttt atttacaggc acatccacgt
    15961 gcgaaaaaag gagagtaatc atacatgagt tcatcaatac atgcaacaac gatatatgca
    16021 gtgagacata atggtggcgc agcgatggca ggtgatggcc aagtcacttt aggtgaaaaa
    16081 gtgattatga aacaaactgc caaaaaagta agaaagctat ataatggcaa ggtcattgca
    16141 ggttttgctg gtagcgtggc agatgctttt acactttttg aaaaattcga agccaaatta
    16201 caacaatata gcggtaatct tgaaagatca gctgtagaac ttgcgaaaga gtggcgtggc
    16261 gacaaacaat tacgtcaact ggaagcgatg ctcattgtga tggataaaga acatatcctc
    16321 gtcgtgagcg ggacaggtga agtcattgcg ccggatgatg atttgattgc aatcggttca
    16381 ggtggcaatt ttgcgttaag tgccggtcgc gcgtttaaaa gacatgcatc acacttaagc
    16441 gcacgtgaaa tggcatatga aagcttgaaa gtagcctcag acatatgtgt attcacgaat
    16501 gaccatatca cagtggaaga actttaatgg aggtatcgag catggatcgt aatgcgatta
    16561 aatttacacc caaagatatt gtagatcgat taaatgaata tattgtaggt caagaagaag
    16621 ctaagaagaa agttgccatt gcattgagaa atagatatcg tcgtagtttg cttgatgatg
    16681 aagtgaaaca agaaattgca cctaaaaata ttttgatgat ggggccgaca ggtgtaggga
    16741 aaactgaaat tgcacgccgt atggccaaaa ttgtcggtgc accgttttta aaagtagaag
    16801 caacgaaatt cactgaggtg gggtacgtcg gtcgcgatgt tgaaagtatg gtccgagacc
    16861 tagttgacgt tgctgttcgt ttagttaaag atcagaaaaa agcaaatgtt gttgaagcag
    16921 cgacacaaaa agcgaatgat aaattagtga aattgcttgt gccgagttta aagaaaaaag
    16981 caagtcaaaa taccaacaat ccattagagt ctttatttgg tggcgccatc ccgaactttg
    17041 gacagcacaa cgaagaagat gaggaagaac caccaacaga agatattaaa acaaagcgct
    17101 ctgaaattcg tgtacagtta ctgaacggac agcttgaaga agagaaagtt aaagtgaaag
    17161 tagagcaaga cccgggcgct ctaggtatgc tcggcacgaa ccaaaatgag cagatgcaag
    17221 aaatgatgaa tcaactgatg ccgaagaaaa aagttgaaaa agaattgccg gtgaaaacag
    17281 cacgtaaaat tttagttgac caatttgctg atgagatgat tgatcacgaa acagcgaacc
    17341 aagaagcact tgatttagca gagcaaatgg gtatcatttt tattgatgaa attgataaag
    17401 ttgcaacgtc aaatcaaaat agtggtcaag atgtttcgag acaaggggta cagcgtgaca
    17461 tcctgcctat ccttgagggt agcgtagtta agacgaaata tggtactgtt agtacggaac
    17521 acatgctttt tattggcgct ggagcttttc atgtatcgaa accaagtgat ttaattccgg
    17581 agctacaagg acgttttcca attcgcgtag aattacaaga tttatcagta gatgattttg
    17641 tacgtattct taaagaaccg aaattgtcct taattaagca atatgaaatg ttattgaaaa
    17701 cagaagaggt tgttgtgaac tttacagatg aagccattta tcgactggcg gaaatggcat
    17761 atcatgtcaa ccaagaaacg gacaatatcg gtgcgcgtcg tctgcatacg atattagaaa
    17821 aaatgttaga agacttgtct ttcgaagcac ccaatatgcc gcatgcacaa gtggacatca
    17881 caccacaata tgttgatgat aaattaaaaa cgatttcgac aaacaaagat ttaagcgaat
    17941 ttattttata agaaaaaaag gagtaatgac atgagcttat tatcgaaaac aagagaattg
    18001 agtagtttgt tacaaaaaca taagggcatc tcagtagatt tcaaagatgt tgcacaaaca
    18061 attagtaaag tgactgtaac taatgtgttc attgtttctc gtcgcggtaa aatattaggt
    18121 tctagcttaa atgaattact taagaacgaa cgtattatta aaatgttgga agaccgacat
    18181 atccctgaaa aatataccga aaagttaatg catgtttatg aaacgttatc taacatttca
    18241 attgatgatg aattatctgt attcccacca gaaaatgaat cagtatttaa agattcaaaa
    18301 acaactgtat tcccaattat tggtggtggc gaacgtctag gtacactcgt tttaggacgc
    18361 gtgtctgacg agtttgaaga taatgacctc atacttggtg agtatgctgc aacagtaatc
    18421 ggtatggaaa tattgcgtga aaaacattca gaaattgaat ctgaagcacg tgataaagca
    18481 gcaatttcta tggcgattaa ctcattatct tattcagaaa aagaagcaat tgatcatatt
    18541 tttgaagaac ttggtggtaa agaaggttta ctgattgctt ctaaagtagc tgaccgcgta
    18601 ggtattacac gttcagtgat cgttaacgca ttaagaaaat tagaaagcgc gggcgtgatt
    18661 gagtctcgtt cactcggtat gaaagggaca ttcattaaag ttaaaaaaga agcattttta
    18721 gacgagttat ctcgcacaga ataaatggct tgacttgttg caatttgtca catcttgtga
    18781 tatattaata tgcggctgaa aaagtcaaaa cacacacgtg catcaaagta taagagggtg
    18841 cgataaggtt atttatcgtt tttatacgag tggacgtggc ggatgtaaac caataggagg
    18901 aatttatatt atggcagtaa tctcaatgaa acaattatta gaagctggtg ttcacttcgg
    18961 tcaccaaaca cgccgttgga acccaaaaat gaaaaagtac attttcactg aaagaaatgg
    19021 catctatatc atcgacttac aaaagacagt gaaaaaagtt gaagaagctt acaactttgt
    19081 taaacaagtt tctgaagaag gcggtaaagt tttattcgta ggtacgaaaa aacaagcgca
    19141 agaatcagtg aaggctgaag cagaacgtgc tggccactac tatgtcaacc aaagatggtt
    19201 aggcggaatc ttaacaaact acaaaacaat ttctaaacgt gttcaacgta tttctgaaat
    19261 tgaaaaaatg gaagaagacg gtactttcga tgtacttcct aaaaaagaag ttgtagaact
    19321 taaaaaagaa tatgaccgtt taattaaatt cttaggcggt attcgtgaaa tgaaatcaat
    19381 gccacaagca ttattcgtag ttgacccacg taaagagcgt aatgcaattg cagaagcgcg
    19441 taaattaaac attcctatcg taggtattgt tgatacaaac tgtgatccag atgaaattga
    19501 ctacgttatc ccagcgaacg atgacgcaat ccgtgcggtt aaattattaa ctggtaaaat
    19561 ggcggacgca atcttagaag gtcaacaagg tgtatcaaac gaagaagtgg ctgctgaaca
    19621 agacatcgac ttaacagaag atgaaacagc agaaggcgaa tcaactgaag cgacagaaaa
    19681 cactgaagca actgttgaat ctaactaaga cgcatcttga aatgggtgat aagataaata
    19741 tgcttatcac ctttttttaa aataaattaa gcatttttta aattggagga attatgaatg
    19801 gcaatttcag ctaaacttgt taaagaatta cgcgaaagaa ctggcgcggg tatgatggac
    19861 tgtaaaaaag ctttagaagc aacagatgga gatatcgaaa aagcgattga ctaccttcgt
    19921 gaaaaaggta ttgccaaagc agctaaaaaa gctgaccgta ttgcagctga aggtatcaca
    19981 catgttgaag tgaaaggtaa tgaagcagtt atcgttgaaa tcaactctga aacggacttc
    20041 gttgctcgta acgaaggttt ccaacagctt gtaaaagaaa ttgctaacca aattcttgat
    20101 acaaaagcag caactgtaga agaattaaat gaaacaacat taccaaatgg taaaaaagtt
    20161 tctgaacata tgactgaagc aatttcaaca atcggtgaaa aattaagctt acgtcgtttc
    20221 gaaatcagaa ctaaaactga taacgatgca ttcggtgctt atttacacat gggtggtcgt
    20281 attgcagtac tttctgttgt tgaaggtaca actgatgaag acgcagcgaa agacgttgca
    20341 atgcacatcg cagcaatcaa ccctaaatat gtatcttctg agcaagtaag cgaagaagaa
    20401 cttaaccacg aaagagaagt tttaaaacaa caagctttaa atgaaggtaa accagaaaac
    20461 atcgttgaaa aaatggttga aggccgttta cgtaaatatt tacaagaaat ttgtgcagtt
    20521 gatcaaaact tcgttaaaaa ccctgatcaa acagttgaag cattccttaa atctaaaggt
    20581 ggcaaacttg ttgacttcgt acgttacgaa gtaggtgaag gcattgaaaa acgccaagaa
    20641 aactttgctg atgaagttaa aggacaaatg aaataattaa cacggttttg tataagaaag
    20701 aagacacctt tcgtgtcctc cttagcatga cttcaatgca tgattgaagc cgtgtacaag
    20761 gaagatacct attgtgtctt ctttacttgt attgttttac atattacgaa tagagaggtt
    20821 aaaaataatg actgaaactt ccaaatataa gcgagtagtt ttgaaattaa gcggagaagc
    20881 actagcagga gataaaggtt ttggtattaa tccaatgatt attaagagta tcgcagaaca
    20941 ggtggcagaa gtagctaaaa tggacactca aattgctgta atcgtaggcg gtggtaacat
    21001 ttggcgtggg aaaacaggta gcgatttagg tatggatcgt ggtacagctg actatatggg
    21061 gatgttagca actgtcatga atgcattagc tttacaagat agtcttgagc aattggattg
    21121 cgacacacgt gtattaactt caatcgaaat gaaacaagtt gccgagccgt acattcgtcg
    21181 tcgtgcaatt cgtcacttag agaaaaaccg tgtcgttatt tttgcagctg gtattggaaa
    21241 cccttatttc tcaacagaca caactgcagc attacgtgca gccgaagtgg aagcagatgt
    21301 gattttaatg ggtaaaaaca atgtggacgg cgtttattca gcagatccta aagttgaccc
    21361 aaatgctaaa aagtatgatc gcttgactta tatccaacta ttacaagaag gtttacaagt
    21421 aatggattca acagcctctt cattctgtat ggacaacaat ataccgttaa aagtcttctc
    21481 tattatggaa gaaggcaata ttaaacgtgc tgttcaaggt gaagatatcg gtacaatcat
    21541 tacaaaataa tatagaggtg cgaaacaatg aaagaaatta ttcaagatgc aaaaacgcgt
    21601 atgaaaaagt caactgagaa tttatctcgt gaattagctc aaatcaatgc gggccgtgcg
    21661 aactcaaact tactagcagg tgttcaagtc gattactatg gtgcgcctac gcctgtacaa
    21721 caacttgcaa gtattaacgt tcccgaagca cgtttactcg ttgtatctcc atatgacaaa
    21781 acgtctttgg ctgacattga aaaagcaatc atcgcagcaa atttaggggt taacccaacg
    21841 agtgatggtg atgtcattcg tattatggta cctgctttaa ctgaagaacg tcgtaaagag
    21901 attgttaaag aagtgaaaaa aacgggtgaa aacgcgaaag tttctatccg taacattcgt
    21961 cgtgatgcga acgatacgtt aaaaagacaa gaaaaagatg gcgatatttc tgaagatgag
    22021 ttacgtaacg gatctgacga agtgcaaaaa attactgata gttcaatcaa agaaatcgat
    22081 cagttagtgg cagacaaaga aaaagatatc atgtcagtct aaatcgcgct gtcattcacc
    22141 ttatcatgtt ggcttaatct atgtaaggtg tgtgaactca gtccaattta ataggaagac
    22201 tgtagaaaaa gtttgtctac ttttaagctg taccgaatac gactttggta cagttttttt
    22261 ctttgtttat tcaatgcggg tattgagtgt gataaaatgg tagataattg tacgcttatg
    22321 agattataat attttaagag acgaaatagg ctcggaggaa cacgcatgtt taagaaattt
    22381 atgaaaaaaa atgacactca aaaccatatc gaagcgctcg atctacataa tatacctgaa
    22441 cacattgcaa ttattatgga tggcaacggg cgttgggcga aacagcgtaa aatgccaaga
    22501 attaaagggc attatcaagg catgcaaacg atcaaaacaa ttacgcgtgc ggcaagtgat
    22561 ttaggggtta agtatttgac cctttatgct ttttcaacgg agaattggtc gcgaccggat
    22621 gaagaagtca actacatcat gggcttacct gttaattttt taaatacgtt tttgccagaa
    22681 ttgattgaga aaaatgtgag agtcgaaacg gttggcttta ttgatgaatt gccagaaaaa
    22741 acgattcagg cgattgaaga agcgaaaatt aaaacagctg acaatacggg attgacttta
    22801 atatttgcga ttaattacgg tggtcgtgcg gagattgttc atggtattca aacattgatg
    22861 aaagagatgc gtcatgcgtc tgatcaagat atcgatgcgt taacagaaca acattttcaa
    22921 aagtatctca tgactcgtga ttatcctgat ccagaattat tgattcgtac gtctggggaa
    22981 caacgcgtta gtaatttcct gatttggcaa ttgtcgtaca gtgaatttat ttttaattct
    23041 aaaatgtggc cagattttga tgaggaagag ttaaaagcat gtattaaaac atatcaatca
    23101 cgacaaagaa gatttggagg attgtagata ggagtagtgg gatgaaggtt agaacaatca
    23161 caacgatagt ggcactcatt gtttttttac ctattttgct cattggtgga tcaacatgga
    23221 tgtattttac atttttactt gcattaattg cgttaaaaga acttttaaac atgaatagaa
    23281 tccaattatt gtcaatacct ggtcttttga gtgcattggc attagtcatt atgatgctcc
    23341 cgcaagattt tggggagtgg gttatcgttt tgcaacaaaa atcactgatt gcgatgagtt
    23401 ttattatttt aagttataca gtgatgtcaa aaaatagatt tagctttatg gactctgcct
    23461 tttgtttgat gtctgtcgca tacgtaggta ttggttttat gtatttttat gtaacgcgag
    23521 aagcagggtt agaatttatc ttattcggat tactgattgt atggttgaca gatactgggg
    23581 catacatatt tggacgcctt ttaggaaaac gtaaattatg gccaacgatt agcccgaaca
    23641 aaacgattga aggatttatc ggtgggttaa tttgtagttt aattgtgcca ctggcattta
    23701 tgtttttcgt tgattttgat tatccaatgg taggactctt actcatcacc gtcgtattga
    23761 gtatgttcgg acaattgggc gatttagtag aatcagggtt caaacgtcat tttggtgtca
    23821 aagattcagg acgtttacta ccaggacatg gtgggatttt agaccgcttt gacagcttta
    23881 tgttcgtatt acctttaatg aatattttct taattcaaat gtaaagagaa gtgagaaatg
    23941 atgaaaaata tcgctatttt aggtgcgtca ggctcaattg gtcaacaggc tattgatgtc
    24001 attgaacgtc atcctgaaaa ctttaattta attgcattca ctgtaggaaa aaacattgat
    24061 tttgcaattg aagtgataca aaaatttaat cctgagattg ttgctgtaca ggaagaaagc
    24121 gcagttgcac aattaaaacc ttatcacagt catattgtca gtggtcgtga agggttaatt
    24181 gaagttgcga cttacaataa aaatgattta gtgttaaatt cattgctagg tagcgtaggg
    24241 cttgaaccga cgatgaaagc aattgaagta gggaaagata tcgcattagc caacaaagaa
    24301 acgttagtcg ttgcaggtga attagtgatg gcacatgcgc gtcaacatgg gatcaatatt
    24361 ttaccagtag actcagaaca tgctgcgatt tttcaatgtt taaatggcga agagatgcgc
    24421 aaagtgaaaa acgtggtcat tacggcaagt ggtggttcat tccgtgactt gacacgtgat
    24481 caattggctt cagttacggt ggaagatgcc ttaaatcacc cgaactggtc tatgggtcat
    24541 aaaattacga ttgattctgc aacgatgatg aataaaggct tcgaagtgat tgaagcgaaa
    24601 tggctgtttg acttagatat tgatcaaatt caaaccattt tgcataaaga aagtatcatt
    24661 cattcaatgg tcgaatttgt tgatacgagt gtgatggcac aattaggtac gccagatatg
    24721 cgcatgccga ttcagtacgc tttcacatac cctgaacgta tagagcatca agcgccatca
    24781 ttaaaccttg cagaagtagc gcaattgaat tttaaaccta tggactttga tcgttatcgc
    24841 tgtttacaat atgcgtatga tgcactgcgt atcggtggta cgatgccggt cgtattaaat
    24901 gctgttaatg aagtagcagt ggctaagttt ttaaaccgag aaattgcctt tttagatatt
    24961 gaaaaaataa tcgaacgtga aatggccgca catgaggtca ttcaaaatcc aactctggaa
    25021 caaattttag aattagatta ttactataaa acaaaagaat atgaggtgta agaaactgtg
    25081 ctcataaccc ttattgcatt tattattgtc tttggtgtac tcgtatttgt acatgaattt
    25141 ggtcatatgt atttcgcgaa acgtgcgggc attatgtgtc ctgagtttgc gattggtatg
    25201 ggtccaaaga tttttagttt tcgaaaagat gaaacacttt atactattcg tttgttgccg
    25261 gtaggtggct acgtgcgtat ggcgggagac gggatggaag agcaacctgt tcaacctggt
    25321 atgcatgtga gaatcaaaac aaatgacgcg aatgaagtga cgcacatcat tttagatgat
    25381 caacataaat ttcaacagat cgaagcgcta gaagtgaaac aagtcgattt aactgaggac
    25441 ttatttattg aaggtataac ggctgatgat gatgcacgtc atcgttttaa cattgctgaa
    25501 aaagcattct tcgtacaaaa tgggagtttg atccaaattg caccacgaca tcgtcagttt
    25561 acgcataaaa agccgtatca aaagttttta acactttttg ctggtccatt attcaacttt
    25621 attttagctt ttgtgttaat tatcggtttg gcgtattatg aaggtgtccc tgtgcctaaa
    25681 attgcgcaag ttggagaaaa atcaccagcg caacaaattg gcttgcaaaa aggtgatgaa
    25741 attaaaaaaa tcggtaatca tgcgatccat cgttttaatg atgtgaaaaa gcaacttgaa
    25801 gcaacagaag gcaagccgac aaccatcgtc attgaacgtg acggtaaaac gattgaaaaa
    25861 gaattctcac cgaaaaaagt agaaattcaa acgacaaaaa caactaaaca aacagattat
    25921 cagctgggtt ttatgcctga aagagagcgt tcgctgtttg aaccgcttct attcggtatc
    25981 caacagacga tagaatacgg taaaattatt ttcgttgctg tagccagtat gattgcgagt
    26041 atttttacag gtgactttag ttttgatatg ttaaatggtc cagtcggtat ttacaaaaat
    26101 gtcgatacgg tagttaaaac gggaattatt aacttaatca gttggacggc cgtattaagt
    26161 gtgaatttgg gaattatgaa tttattaccg attcctgcac tggatggtgg gcgtatttta
    26221 ttcgtgattt acgaagcgat atttagaaaa cctgctaata aaaaagcaga aacagttatt
    26281 attgcagcag gtgcggtttt tgtattaatc atcatggtgc tcgtcacttg gaatgatata
    26341 caacgttatt tcttatgata ggacaaggag gaacaatcta ggatgaagca atcaaaagtt
    26401 tttattccaa cattgagaga agtacctgct gaagctgagg caataagcca tcaattgtta
    26461 ttaaaagcag ggttaattaa acaaaatgct gcgggggtat acagttattt gccagtagca
    26521 acacgtgtca tccataaaat ttcagatatt atccgtcaag aaatggaacg tattgacgca
    26581 gtagaagttg tgatgccggt attgcaacaa tctgaactat ggaaggaatc aggacgttgg
    26641 gatgcttacg gtatggaatt gatgcgttta cgtgatcgca accaacgtga atttgcatta
    26701 gggccaacac atgaagaagt cgtaacatca ctcgtacgcg acgaattacg ttcatacaaa
    26761 cagcttccat taacgttgtt ccaaattcaa acaaaattcc gtgatgaaaa gcgtccacgt
    26821 ttcggtttat tacgtggtcg tgaattcatt atgaaagatg cgtattcttt tcacactgat
    26881 gaagaatcac tcatggaaac gtatcaaaat atgtacaacg catacagcac aattttcaaa
    26941 cgcgttggct taaatgtgcg cccagttgta gcagattcag gtgcgattgg tggaaatcat
    27001 acacatgaat tccatgcatt aagtgccatt ggtgaagata cgattgtata tagcgataac
    27061 agtgattatg ctgcgaacat tgaaaaagct gaagtgacat attatgaaac gacaaacact
    27121 gctgaggcat tacaaccgtt agaaaaagta gagacaccta atgttaaaac ggcgcaagag
    27181 cttgcagact ttttaggcca accgttagaa aatatcatta agacgatggt ctttaaagtg
    27241 aatggcgcgt ttattttatt actcgttcgt ggtcatcatg aagtgaatga cgttaaaatt
    27301 aaggattact ttaaaacaga tgatgtcgct atggcaacgg atgatgaaat tcgtaattta
    27361 ttaggtgcat caccaggttc attaggccct gtgacagatc gagatgtcaa agtatatgca
    27421 gaccaattcg tgcaatcatt acgcaactta gcgattggtg caaatgaaga tggttaccat
    27481 tacgtgaatg caaatgttga gcgtgatttc caaattgaag gttatggcga tttccgtttc
    27541 attcttgaag gcgagccatt ggcagatggt tctggcccag cgcaatttgc ggaaggtatc
    27601 gaagtgggtc aagtgttcgt actcggtgaa aaatattctg aagcgatgaa agcgacggtg
    27661 ttaaatcaac aagggcgtga acaaaactta acgatgggtt gttatggcat tggtgtctca
    27721 agaacattga gtgcgattat tgaacaacac catgatgata acggtattat ttggccgaaa
    27781 tcagtgacgc catttgatgt ccatttaatt tcagtgaatc ctaaaaaaga cgaacaacgt
    27841 gcatgtgcag atcgattgta tgatcaatta ttaggtactt atgatgtatt gtatgatgac
    27901 cgaaatgagc gtgcaggtgt gaaatttaac gatgcagact taataggtat tccagttcgt
    27961 gtcgttgtcg gtaaaaatgc atcagaaggt atcgtagaag tgaagcgtcg tgatactggc
    28021 gacagtgaag atgtgcatgt gaacgattta gtgacacacc ttgaaaaatt atacgaacaa
    28081 atttagtagc tatcatgact gaatttgtta taatacgatt aatcgttgaa caatgtgaag
    28141 tatgatggat gaacatttga tattttgttt ttattggttg ttcacttggg ctcgcattcc
    28201 taggcgcctc acttccacta accaacgctt gtatgaatta ttatattctt gaagcgttgg
    28261 tggattttca gtttcggctc tatgcctcag gagtctcgcc cagattcata atacaatcag
    28321 tccagatgaa tcatcatcgt ttgctgtttc aataaaattt gaaatatcat ggttgtcaat
    28381 gtatttcaca attttaactg atatcatttg aggaatagca aagttaacgc cttggacagt
    28441 tcttacaaac atagaaagtg ttattgaaat tcaaaagtgg atagggtgaa gtgatgcatt
    28501 gttgataacg cgaatagccc tagtgcagtg taaggcttaa attgatttta gaggctggga
    28561 cattcagttt gtccagcctt ttctattgtt ttcatgtaca tgtgtaaaat taaaatgcac
    28621 aatcaaatta ttattaatgg aaaccaaatt tttgatactc aattgagctt aattccaact
    28681 ttttgatttc attgattagt ggtccttggt atcaaattgc taaaatggat gagactctcg
    28741 agggatcagc tgaaccggaa aatccaccaa cgcttcaaca atgtaatagt tcaattaagt
    28801 gttggttagt tggaggtttc agtccctggg aaagcgaatc catggcggca attgtaatca
    28861 atatagcaat catatcaaaa tagataagtt tagcaattaa aagaacagca aatctaaaaa
    28921 tgaaccgatc gtattcatga aaattgttca acattaatga atccaacgca tacacggcaa
    28981 ttcaaataag gtggttagaa aattgacatt acagaatcaa gaaaaattta agattcttct
    29041 taaacaagtg aatatgttag accattttga tcaagacttc attgatcaag gccaattgac
    29101 acgtgtagat gtatccccaa aatcacgaaa atggacgttt catattcggt tgccacgatt
    29161 gttaaaatat gaagattatg cagtctttac ccatgcgatg aaagaaagct tccaacatat
    29221 tgcagatgta gattggaaaa ttacggtcaa tgatgtgtca caacaagatg aatatttact
    29281 gaaatattta ggtgattgta tagaacaaac acaattgtcg cctaaagtga aagggcaact
    29341 aaaacaaaaa cgtatgattg tctcaggtga tgttgttaaa attctcgtcc aaaatgatat
    29401 tgaggggaac catttcaaaa aagtgtgcaa cggcagctta gtgcgcgcga tgcaacgatg
    29461 tggttttaat attcaaaaag ttgtatttga aacagatgaa agtggtcacg acgaagattt
    29521 agcatcatta gaagctcata ttcaagagga agatgaacta agtgcacgcg aagcaactgc
    29581 taaaattgaa aaaatgaaag aacaacgtgc acaacaagat gatgaagtgg ccgtcgaacg
    29641 ttgtcaaatt ggtaagccga ttcaagttga aaatgttcga ccgattgaat cgattattga
    29701 agaagagttt aaggtggcaa ttgaaggtgt cattttcgac attaatttaa aagagttgaa
    29761 aagtggccgt cacatcgttg aattaaaggt gacagactat acggattcac tcgtacttaa
    29821 aatgtttaca cgtaaaaaca aaaacgactt agaccatttc aaatcattaa aagaaggtca
    29881 atgggtgcgt gcacaaggtc gtattgaaga agatatgttc attcgcgacc tcgtgatgat
    29941 gatgtctgac attgaagcga ttaaacgcac accaaaaatg gataaagctg cggaaaagcg
    30001 tgtagaattc catttgcata catcaatgag tcaaatggat ggtgtgacgc atattggtga
    30061 ttatgtcgca caagctgcac aatggggaca tgatgcgatt gcagtaacgg atcataacgt
    30121 cgtacaagct tatcctgatg cacatgctgc agctgaaaag catggtatta aaatgattta
    30181 tggaatggaa ggcatgctcg ttgatgatgg tgtgccgatt gcgtataaac cgtcggatat
    30241 tatgctccaa gatgcgacat atgttgtatt tgacgtcgag actaccggat tatccaatca
    30301 gtacgataaa atcatcgagt tggccgccgt gaaagtgaaa aatggtgaaa ttattgataa
    30361 gttcgaacga tttagtaatc cgcatgaaaa gttaactgaa acgattaaaa acttgacgca
    30421 tattacagat gatatgttaa aagatgcgcc tgaaattgaa gaagtgctta ctgaatttaa
    30481 agcatgggta ggcgatgcga ttttcgttgc acataatgca tcgttcgata tgggctttat
    30541 cgataccggt tatgaacgtc tcgggtttgg tccttcggca aatgcggtta ttgatacact
    30601 tgagttgtca cgtacgatta acacaagtta tggcaaacac ggcttgaact ttttagctaa
    30661 aaaatatggc gtggagctca cacaacatca ccgtgcgatt tatgatacgg aagcaacagc
    30721 ttatattttc gtgaagatgt tggcgcaatt aaaagcgtta gatgtgcaca accaccaaga
    30781 tatcaacaaa aaattatcga atgaagatgc ttataaacgt gcacgcccgc aacacgtcac
    30841 attaattgtg caaaatcaaa ccggtcttaa aaacttgttt aaaattgtca gtgcgtctct
    30901 cgtgcaatat tattaccgta caccacgtat tccacggtca ttactagatg aacatcgtga
    30961 aggcttgtta gtcggtaccg catgcgatga aggtgaagta tttactgccg tcatgcagcg
    31021 agatcaatct gaagttgaac ggattgcgaa atattatgat tatattgaag tgcaaccgcc
    31081 tgctttgtac caagatttac tagatcgtga cttgattcgt gataatgaaa cgcttgtcga
    31141 aatttatgaa cgtattttaa aagtgggaga aacgaatcaa attccagtaa ttgcgacagg
    31201 caatgcccac tatttacatg aacatgatgc gattgcacgt cgtattttaa ttgcctctca
    31261 acctggtaac ccgttgaacc gttcgacgtt accagaagca cattttagaa cgacggatga
    31321 aatgttagat gcttttcatt tcttaggtga agaacgtgcg caccaaatcg tcgttgaaaa
    31381 tacgcgtgcg ttggcagagc gcattgaaaa ggtcgttcca attaaagata aactgtatac
    31441 gcccaatatg gaaggcgcaa atgaagaaat tcgtgaaatg agttatcgtc atgcgaaaca
    31501 gttgtacggt gaagaattac cacagattgt gattgaccgt ctagagaaag agctagaaag
    31561 tattatcggt aacggatttg cggttattta tttaatttcg caaagactcg ttaaaaagtc
    31621 attagaagat ggctatttag taggttctcg tggttcggtc gggtcaagct ttgttgcgac
    31681 aatgacggaa attacagaag tgaacccact gccaccgcat tacatttgtc caagttgtaa
    31741 aaagagtgag tttttcgatg atggttcagt cggttcaggc tttgacttac ctgataaaac
    31801 gtgtgaatgt ggcacagaga tgatcaaaga aggacaagat attccgttcg aaacgttctt
    31861 aggctttaaa ggggataaag tccccgatat cgacctgaac tttagtggtg aatatcaacc
    31921 gaaagcacat aactatacaa aagtcttgtt cggtgaagaa tatgtttatc gtgccggaac
    31981 aattggtact gtcgctgaaa aaacggcatt tggtttcgtg aaagggtatt taaatgatca
    32041 aggcattcat aaacgtggtg ctgaagtgga tcgtctcgtg aaaggttgca caggtgttaa
    32101 acgtacaact ggtcagcacc caggtgggat tatcgtggtt ccagattata tggacatttt
    32161 tgactttaca ccgattcaat atccagcaga cgatcaaagt tcaagttgga tgacgacgca
    32221 ctttgacttc cattcgattc atgataacgt tctgaaactt gatattctcg ggcacgatga
    32281 tccaacgatg attcggatgt tgcaagactt gtcaggtatc gatccaaaaa cgattcctgt
    32341 tgacgatcaa caaacgatgc ggattttcag ttctccagaa gcgcttggtg taacagaaga
    32401 ggaaatttta gcgaaaaccg gaacgttcgg tgtgccagaa tttgggacag gtttcgtacg
    32461 tcaaatgtta gaagacacga aaccgacgac attttcagag cttgtacaaa tttcaggact
    32521 gtcacatggt accgatgtat ggttgggtaa tgcacaagaa ctgattcgta gtggaacttg
    32581 tacgttatcg agctgtatcg gttgtcgtga cgatattatg gtgtacttaa tgtacgctgg
    32641 tttagaaccg tcactcgcct ttaaaattat ggaagcagta cgtaaaggta aaggcttaac
    32701 agaggaattt gaacaagtga tgaaagaaaa taacgtgcca gattggtata tggattcatg
    32761 taagaaaatt aaatacatgt tcccgaaagc gcacgcagca gcttatgtgc taatggctgt
    32821 acgtatcgct tatttcaaag tgcatcatcc actttattat tatgcaagtt actttactgt
    32881 ccgtgcgtca gactttgatt taattacgat ggtgaaagac aaagacagta ttcgtcaaac
    32941 tgtaaaagat atgtatgcac gttacatgga tttaggtaaa aaagaaaaag atgtattgac
    33001 cgtgctagaa attatgaatg aaatggcgca tcgtggttac cggatgcaac ctgtcaactt
    33061 agagaaaagt caggcatatg agttcattat tgaaggtgat acattaattc cgccattcgt
    33121 tgctgtgccg ggtcttggtg aaaacgtagc gaaacgtatt gttgaagcgc gtgaagaagg
    33181 accgttctta tcgaaagaag atttgaacaa aaaagctggt gtgtcacaaa aaatcattga
    33241 atacctcgat agtttaggct cattaccgaa tatgcctgac aaagcacagt tgtctatctt
    33301 tgatatgtag agataaattt gtcggaagat gcaatctatg gtataatgat gttgcttata
    33361 aaattagact caagtgggaa gagtgggtgt tacccgctct tttctatttg tttgtcagtc
    33421 ataagggggc tcgtatgagt aaagttacag agcaagttga aaccataata caacctgtcc
    33481 ttgacgaatt gaactttgaa ttagtagacg ttgagtttgc taaagaaggt cgcgatcatt
    33541 atttgcgtat cgccattgat aaaccgggtg gcgtcgattt gaatgattgt acactcgcat
    33601 cagaacgcat tagtgaagtg atggatgaac aagatccgat tccacaagcg tattatttag
    33661 acgtgtcatc accaggtgca gaacgtccaa ttaaaaatga aaaagacttt caaaatgcga
    33721 ttgaacaacc gatctttgta tcgttatatg caccgattga aggtgacaaa gaatggttag
    33781 gtcatttgaa atcagtcact gaagatgcca ttactatgga agtgaaagtc aaagcaaaga
    33841 cgaaaaccat cacgattcca cgtgataaaa tcgctaaagc acgtcacgca gttatgcttt
    33901 aaagacgtaa ggaggaaaat gagtggaaag taacgaatta ttattagcaa cggaatattt
    33961 agaaaaagag aaaaaaattc ctagagaagt tttagttgat gcaattgaag cagctttaat
    34021 tacggcatat aagaaaaact acgacagcgc acgtaatgtc cgtgttgaat taaatttaga
    34081 cagcgggaca ttccgagtga tttctcgtaa agaggttgtc gaagaagtgt ttgatcaccg
    34141 tgaagaaatt gatttatcga cagcattagt aaagaatcca gcgtacgaaa ttggggatat
    34201 ttatgaagaa gatgtgacac cgaaagactt tggtcgtgtc ggtgcacaag cagctaaaca
    34261 agctgtcatg caacgtttac gtgatgcaga acgtgaaatt ttatacgaag agttcatcga
    34321 taaagaagat gacattatga caggtgtgat cgaccgtgtg gaccatcgtt atgtttatgt
    34381 gaatttagga cgtacagaag cagtattatc tgaagcagaa cgtagcccga atgaaacgta
    34441 tcttccaaat gaacgcatca aagtgtatgt gaataaagtg gaacaaacga caaaagggcc
    34501 tcaaattttt gtatcacgta gccatccagg tttattaaaa cgcctttttg aacaagaagt
    34561 gcctgaaatt tttgaaggta ctgtggaagt gaaatctgtt gcgcgtgaag cgggagaccg
    34621 ttcgaaaatt agtgtgtact cagaaaatcc agatattgat gcagttggcg catgtgtggg
    34681 tgcgaaaggt gcacgtgtag aagcggttgt ggctgaatta ggtggcgaaa aaatcgatat
    34741 cgttcaatgg agtgaagatc cgaaagtatt cgtacgtaat gcattgagcc cgtcacaagt
    34801 gattgatgtg attgtagacg aagaaaatca atcgacgact gtaatcgttc cagattatca
    34861 actgtcatta gcaatcggca aacgtggtca aaacgcacgt cttgctgcaa aattaacagg
    34921 ttggaaaatc gatattaaat cagaaacaga tgcaaaagcg ttaggtatcg gtgaaaaaga
    34981 aacaacaact gttgaaactg aacctgtagc gatgacagct gaagagctgg atttagaagc
    35041 aacgacggat gaacacattg aagacaatgc aagcttagag gatgaaagta aagagaatta
    35101 ggagggattt ttatgaaaaa gaaaaaaatt cctatgcgaa aatgtatttt atctaatgag
    35161 atgaaaccta aaaaagagat gattcgtgtt gtcaaaaata aagaaggcga aatttcagct
    35221 gacgtaacag gaaagatgcc gggacgcggg gcttacgttt caaaagacat cgctttaatt
    35281 gaaagggcac aacaggcgca caaattagag gattatttta aagcgtcaga agaatcactt
    35341 gaacctgttt acaaagaaat tatacgtctg atctatagag aagagattcc gacaaaatga
    35401 atgaacaaca atttttaaac tttttaggtt tggcgatgcg tgcgggaaaa gtgaagacag
    35461 gcgaatctgt catccttact gaagtgaaaa agcgtcgttt aaaacttgtg ctcatcgcaa
    35521 gtgacgcgtc tgagagtacg aaaaataata tcatcaataa atgtaacagt tatcaaacac
    35581 cttatcgcat tgttagtaac cgtaacgatt taggagatgc attaggtaaa ggtgcacgtg
    35641 tcaatgtcgg tattactgat caagggtttg caaaaaagtt gatgtcaatg atagatgaat
    35701 aatgttagga gtggtttaat gagtaaacaa agaatttatg agtatgccaa agatttaaat
    35761 attaaaagta aagatgtaat tgatgagtta aagaaaacgg gaatcgaagt gtccaaccac
    35821 atgcaaactt tagaagatga ccaagtgaaa gcgttggata aagtattcaa aaaaaaccaa
    35881 gctccgaaac aacaaaaaga gcaaaaaaat actcaatcaa atcacaaaaa ccaaaaacaa
    35941 ggtaacaacc aaaaacaagg taacaaccaa aaacaaggta acaaccaaaa acaaggcaac
    36001 aatcagcaac aaaagggtaa aaataacggc cctaaacaaa acaagaaaaa caacaaaggc
    36061 aataaaaaca aaaagcaaaa caagaaaaat gcaccacaac aaccaagtga acctaaagaa
    36121 ctgccatcaa aaatcactta cactgaaggt attacagtgg gtgaattatc agacaaactc
    36181 ggcgtagatt catcagaaat tattaaaaag ttattcttgc ttggcattat ggcgaacatc
    36241 aaccaatctt tagatattga agcacttgaa ttagttgcat ctgattacgg tgtggaactt
    36301 gaagaagaag tggtcattga tgataacgac ttgtcaattt attttgaaga cgttgaagaa
    36361 gatgaagacg cgatcgtacg tccagcagtt gtgactatca tgggacacgt tgaccatggt
    36421 aaaacgacat tgcttgactc aattcgtaat acacgtgtta ctgaaggaga agcaggcggt
    36481 atcacacaac atatcggtgc ttaccaaatt acgaacaatg gcaaaaaaat cacgttctta
    36541 gatacgccag gacacgccgc ttttacaaca atgcgtgcgc gtggtgctca agtgacagac
    36601 attaccattt tagttgtcgc tgctgatgat ggtgtgatgc ctcaaacaat tgaagcgatc
    36661 aaccatgcga aagaagcaga tgtgccaatt atcgttgcag tcaacaaaat tgataagcca
    36721 acagcgaacc ctgaccgtgt gatgcaagaa ctagcggaat acaacctcat ccctgaagac
    36781 tggggtggcg atacgatttt cgtaccacta tcagcgttaa gtggtgaagg tattgacgat
    36841 ttacttgaaa tgcttatctt agtttctgaa gtacaagaat taaaagcgaa cccgaataaa
    36901 gcagcagtcg gtacagtcat cgaagctgaa ttagacaaat cacgtggtcc tgccgcttca
    36961 ttacttgtcc aaaacggtac attaaatgtc ggcgatgcac ttgtagtcgg taacacacat
    37021 ggtaaagtcc gagcaatggt gaacgacctc ggtaaacgta ttaaaactgc aggtccatca
    37081 acaccagttg aaatcactgg tttaagcgac gtacctcaag caggtgaccg cttcgtcgta
    37141 ttcaaagacg agaaaaaagc acgtcgtatc ggtgaagcac gtgaacaaga aaatattatt
    37201 caacaacgtc aagaaagcaa aaacgtaaca ttggataact tgttcgaaca aatgaaacaa
    37261 ggtgaaatga aagacttgaa tgtcatcatc aaaggtgacg tacaaggttc agtggaagca
    37321 ttagccgcgt cattaatgaa aattgatgtt gagggcgtaa acgtgcgtat tattcataca
    37381 gcaacaggtg caatcaacga atctgacgtg acattagcac atgcctcaaa cggtatcatt
    37441 atcggcttta acgtccgtcc agatgcaggg gcaaaacgtg cagcagacgc tgaaaatgtc
    37501 gatatgcgtt tacaccgtgt catttataac gtgattgaag aaatcgaatc cgcaatgaaa
    37561 ggcatgcttg atcctgaatt tgaagaaaaa gtcatcggtc aagcagaagt acgtcaaaca
    37621 ttcaaagtat cgaaagtcgg tacaatcgcc ggtagttatg tcactgaagg taaaatcaca
    37681 cgtgacgcag gtgtccgtgt tatccgtgat ggtgtcgtat tatttgaagg cgaattagat
    37741 acattgaaac gtttcaaaga cgatgtgaaa gaagttgcac aaggttacga atgtggtatc
    37801 acagtagcga aattcaatga tattaaagaa ggcgatatta ttgaagcatt tgtcatggta
    37861 gaagtagaaa gataatgaac tgaatgaaac ctccttgagt ctatgatggg ttgaaggagg
    37921 ttttgttatg taaaaaatgg cgcatgaatt ttaaattgtt tttcattcac ttgcttattg
    37981 ttgttacttt agcgtttata tgcacctttt aaaagtagca aaaaactaaa actttattcc
    38041 tttaaatttt aaacttttgt ataataaaga caaacaaagg aggacgttga tggaaaagtt
    38101 attaaaagat tttttcatca cttttatcat cggtgtggct ggcatattat taatgtactg
    38161 gatcggttac gtgccaccga atccgcgcat attcaatgtt gtagataaga ttactgtaac
    38221 gcatttcttt gagaatcgca tttatgacaa ttggctcatg attgcatttt tatttgccct
    38281 tgttgtcact gtgtttgatg tagggagttc aaagaaagag gataagtaaa taaagcgtca
    38341 ggatccggta atgactttac atatgtagaa tgagttagaa ggtgtagaaa tacatctgtt
    38401 ttgatagtac gttgcaaaac tgacaaagat tcgagacttg gatattaagt gatccgagtc
    38461 ttttaatggt tattgtattt ataaaattac actgtggccc tcaatatact ttcaaaataa
    38521 atgcaatgcg cgtataatac atctataaaa acataggagc ctatgagtca tatgttttca
    38581 cctacagctt gctaaatttg taatagtagg gggtgataca t
//
LOCUS       DANHOL010000004        35826 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.004, whole genome shotgun sequence.
ACCESSION   DANHOL010000004 DANHOL010000000
VERSION     DANHOL010000004.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 35826)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 35826)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..35826
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.004"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            <1..902
                     /locus_tag="PTC08_000111"
     CDS             <1..902
                     /locus_tag="PTC08_000111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDK5681650.1"
                     /translation="AMDTIIMDAITPDVERYIYKIDYWLTNLALAFGALMGGILYHNN
                     KSTLFFIAFLIFILVFLSLLRWLPKETHVTEKRSLSMHPFNVLKSYEQVFKDRRFMVM
                     TLGSSIMMMGELSASSYIAIRLKAEFNTISVAFFNIDGVKLYSLLMIVNTIVVITCTY
                     FVTKIILKLSVKKSLILGLIFYVIGYASITYLNEFYSLILLMFIATIGEIIYSPILDE
                     QRFKIIPENKRGTYSAFNALGFNLSELIARLGIILGVYLSSIGMGIYMFIFLSIGAFF
                     IYLSIYGNFKLQTPSQNKVESIE"
     gene            complement(1088..1516)
                     /gene="tnpA"
                     /locus_tag="PTC08_000112"
                     /pseudo
     CDS             complement(1088..1516)
                     /gene="tnpA"
                     /locus_tag="PTC08_000112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011066964.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS200/IS605 family transposase"
     gene            complement(1726..2685)
                     /locus_tag="PTC08_000113"
     CDS             complement(1726..2685)
                     /locus_tag="PTC08_000113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HDK5681651.1"
                     /translation="MKRIMITGALGQIGTELVARCREIYGNENVLATDIREPEANSIV
                     AAGPFEILDVTDADKMVQLVESFKPDTLMHMAALLSATCEQNPLLAWNLNMGGLVNAL
                     EAAREYNLQFFTPSSIGAFGPDTPKKNTAQVTIQRPNTMYGVNKVSGELLCDYYFTKF
                     GVDTRSVRFPGLISYVKEPGGGTTDYAVDIYFQAVREGKYTSYIQKDTYMDMMFMDDA
                     IDAIIQLMEADGGKLIHRNAYNLSAMSLEPEMIKEAIQAHIPDFKLTYDVDPVRQDIA
                     ESWPDSIDTSCARGEWGFNPQYDLEKMTVRMLEGIREKESHKA"
     gene            complement(2893..4083)
                     /locus_tag="PTC08_000114"
     CDS             complement(2893..4083)
                     /locus_tag="PTC08_000114"
                     /EC_number="2.3.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002479459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine C-acetyltransferase"
                     /protein_id="HDK5681652.1"
                     /translation="MVQQLNDFLDENLNHLKENGLYNEIDTVEGANGPEIQINGKKYI
                     NLSSNNYLGLATNEDLKTAAKNAIDSHGVGAGAVRSINGTLDLHDELESTLAEFKGTE
                     AAVAYQSGFNCNMAAISAVMNKNDAILSDELNHASIIDGCRLSKAKIIRVNHSDMDDL
                     RQKAKEAVESGQYNKVMYITDGVFSMDGDVAKLPEIVEICEQYGIMVYVDDAHGSGVM
                     GKGAGTVKHFGLQDKVDFQIGTLSKAIGVVGGYVAGSQKLIDWLKAQSRPFLFSTSLA
                     PGDTKAITEAVKKLMASTELHDRLWENANYLKEGLSRLGFDTGQSETPITPVIIGDEK
                     KTQQFSKRLMEEGIYVKSIVFPTVPRGTGRVRNMPTAAHTTEMLDQALEVYARVGKEL
                     GIIE"
     gene            4193..5380
                     /locus_tag="PTC08_000115"
     CDS             4193..5380
                     /locus_tag="PTC08_000115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HDK5681653.1"
                     /translation="MTDWFQLAYDKEQEMVQTRRYLHQNPELSFQETKTHAYILQRLQ
                     QLNFEIEEKVGRNGIIARITGDESGSTIALRADFDALPIEDLKEVPYRSQVPGVMHAC
                     GHDGHTTILLTVAELLHAHQTQLKGTVVLIFQYGEEVMPGGAQEMIADNALMGVDKIY
                     GNHLWSGYPTGTIHTRPGPMMAQPDEFNITIHGKGGHGAKPHETIDPIVILAEFILSA
                     QKIVSRTLDPVKQAVISFGKIEAGEADNVIPDTATCRGTVRTFETDVQAHIYHKMDLL
                     LQGLALANDITYTFDYIKGYLPVYNHEASAEIVKNAAHALNFRYQESDLMMVGEDFSF
                     YLKARPGAFFLTGCGSAQKGTDWPHHSPHFDIDEDAMKYAVSTFMKILELEGIFKDEL
                     KRT"
     gene            5966..6670
                     /gene="budA"
                     /locus_tag="PTC08_000116"
     CDS             5966..6670
                     /gene="budA"
                     /locus_tag="PTC08_000116"
                     /EC_number="4.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017636624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate decarboxylase"
                     /protein_id="HDK5681654.1"
                     /translation="MGDILYQHGTLGTLMAGLLEGTATIQDILKQGDAGLGTLAGSDG
                     EVIFIDGQAFHANAQNEFTQLTGEELTPFATITRFRAHHTFKTTNQSAQHALSQVRTK
                     MRSQNAFSAVKITGTFQHMHVRMMPGQTPPYRRLIESAQQQPEYTRSNISGTLIGFYT
                     PELFHGIGAGGFHIHFADDARTFGGHVLDFHIEAANVEIQDFETLTQHFPVNYRSFTE
                     AEIDYEDINEEIREVE"
     gene            complement(6782..7969)
                     /gene="tuf"
                     /locus_tag="PTC08_000117"
     CDS             complement(6782..7969)
                     /gene="tuf"
                     /locus_tag="PTC08_000117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HDK5681655.1"
                     /translation="MAKEKFDRSKEHANIGTIGHVDHGKTTLTAAIATVLAKHGDSVA
                     QSYDMIDNAPEEKERGITINTSHIEYQTDKRHYAHVDCPGHADYVKNMITGAAQMDGG
                     ILVVSAADGPMPQTREHILLSRNVGVPALVVFLNKVDMVDDEELLELVEMEVRDLLSE
                     YDFPGDDVPVIAGSALKALEGDAQYEEKILELMEAVDTYIPTPDRDSDKPFMMPVEDV
                     FSITGRGTVATGRVERGQIKVGDEVEIIGLTEESSKTTVTGVEMFRKLLDYAEAGDNI
                     GALLRGVAREDINRGQVLAAPGSITPHTKFKAEVYVLSKDEGGRHTPFFSNYRPQFYF
                     RTTDVTGVVNLPEGTEMVMPGDNVEMEVELISPIAIEDGTRFSIREGGRTVGSGVVTN
                     IEQ"
     gene            complement(8151..10232)
                     /gene="fusA"
                     /locus_tag="PTC08_000118"
     CDS             complement(8151..10232)
                     /gene="fusA"
                     /locus_tag="PTC08_000118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017804675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HDK5681656.1"
                     /translation="MGRDFSLKNTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETH
                     EGASQMDWMEQEQDRGITITSAATTAEWKNHRVNIIDTPGHVDFTVEVERSLRVLDGA
                     VTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKIGANFDYAVSTLHDRLQANAA
                     PIQLPIGAEDEFSAIIDLVTMKCFKYTNDLGTEIEETEIPEDYRERAEEAREALIEAV
                     AETNESLMEKIFEEQEITVDELKDAIRQATTDVEFYPVLCGTAFKNKGVQLMLDAVID
                     YLPSPLDVKPIVGHRADDPDEEVIAKADDDAEFAALAFKVMTDPYVGKLTFFRVYSGT
                     LTSGSYVKNSTKGKRERVGRILQMHANSREEISTVYSGDIAAAVGLKDTGTGDTLCGE
                     KNDIILESMEFPEPVIHLSVEPKSKADQDKMTQALVKLQEEDPTFKAHTDEETGQVII
                     GGMGELHLDIIVDRMKKEFNVEANVGAPMVSYRETFKSSAAVQGKFSRQSGGRGQYGD
                     VHIEFTPNETGAGFEFENAIVGGVVPREYIPSVEQGLKDAMENGVLAGYPLIDVKAKL
                     FDGSYHDVDSSEMAFKIAASLALKEAAKKCDPVILEPMMKVTIEMPEEYMGDIMGDVT
                     ARRGRVDGMEPRGNAQVVNAYVPLSEMFGYATSLRSNTQGRGTYTMYFDHYAEVPKSI
                     SEEIIKKNKGE"
     gene            complement(10375..10845)
                     /gene="rpsG"
                     /locus_tag="PTC08_000119"
     CDS             complement(10375..10845)
                     /gene="rpsG"
                     /locus_tag="PTC08_000119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013054923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HDK5681657.1"
                     /translation="MPRKGSVPKRDVLPDPIHNSKLVTKLINKIMLDGKRGTAQRILY
                     SAFDLVQERSGRDAMEVFDEAINNIMPVLEVKARRVGGSNYQVPVEVRPERRTTLGLR
                     WLVNYARLRGEKTMEERLANEILDAANNTGGAVKKREDTHKMAEANKAFAHYRW"
     gene            complement(10926..11339)
                     /gene="rpsL"
                     /locus_tag="PTC08_000120"
     CDS             complement(10926..11339)
                     /gene="rpsL"
                     /locus_tag="PTC08_000120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015912363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HDK5681658.1"
                     /translation="MPTINQLVRKPRQSKTKKSDSPALNRGFNSQKKQFTKLNSPQKR
                     GVCTRVGTMTPKKPNSALRKYARVRLSNNIEINAYIPGIGHNLQEHSVVLVRGGRVKD
                     LPGVRYHIVRGALDTSGVDGRMQSRSLYGTKKPKK"
     gene            complement(11435..11689)
                     /locus_tag="PTC08_000121"
     CDS             complement(11435..11689)
                     /locus_tag="PTC08_000121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal L7Ae/L30e/S12e/Gadd45 family protein"
                     /protein_id="HDK5681659.1"
                     /translation="MSNEKVTRFDKQAYVVGLKETLKALRNQRVNKLIIGEDVNVHLL
                     ARVLSFANQNMIPIEFFSSRQALGEYVGINVKATVVALLK"
     gene            complement(11867..15487)
                     /gene="rpoC"
                     /locus_tag="PTC08_000122"
     CDS             complement(11867..15487)
                     /gene="rpoC"
                     /locus_tag="PTC08_000122"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HDK5681660.1"
                     /translation="MIDVNKFHYMKIGLASPEKIRSWSYGEVKKPETINYRTLKPEKD
                     GLFCERIFGPTKDWECSCGKYKRVRYKGMICDRCGVEVTKSKVRRERMGHIELAAPVS
                     HIWYFKGIPSRMGLLLDMSPRALEEVIYFASYVVVDPGPTGLEKKTLLSEAEFRDYYD
                     KFPGQFTAKMGAEGIKDLLEEINLDEELKMLRDELESATGQRLTRAIKRLEVVESFRN
                     SGNNPAWMILDVLPIIPPEIRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGA
                     PGIIVQNEKRMLQEAVDALIDNGRRGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGK
                     RVDYSGRSVIAVGPNLKMYQCGLPKEMALELFKPFVMKELVQREIATNIKNAKSKIER
                     TEDEVWDVLEDVIIEHPVLLNRAPTLHRLGIQAFEPTLVEGRAIRLHPLVTTAYNADF
                     DGDQMAVHVPLSKEAQAEARMLMLAAQNILNPKDGKPVVTPSQDMVLGNYYLTLERKD
                     AVNTGMMFNDTNEVIKAYANGHVHLHTRIGVQASSFNNPTFTEEQNRKILTTSVGKVI
                     FNEIIPDSFAYINEPTATNLEKSTPDKYFVDASELGEGGLAEYFENTELVPPFNKKFL
                     GNIIAEVFNRFSITDTSMMLDLMKDLGFKYSSKAGITVGVADIVVLPDKQEILDESEK
                     LVERVQKQFNRGLLTEEERYNAVIEIWTNAKDRIQAKLMKSLDKTNPIFMMSDSGARG
                     NASNFTQLAGMRGLMAAPSGKIIELPITSSFREGLTVLEYFISTHGARKGLADTALKT
                     ADSGYLTRRLVDVAQDVIVREEDCGTDRGLLVSDIKEGTEMIEPFIERIEGRYSKETV
                     RHPETDEIIIRPDELITPEIAKEITDAGIEEMYIRSAFTCNTRHGVCEKCYGKNLATG
                     EKVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVAGSDITQGLPRIQEIFEARNPKGQ
                     AVITEIEGVIDNITVGKDRQQEIVVKGANETRSYLASGTSRLKVEIGQSVARGEVLTE
                     GSIEPKNFLSIAGLTATEEYLLKEVQKVYRMQGVEIDDKHVEVMVRQMLRKVRIIEAG
                     DTKLLPGSLVDIHNFTDANREAFKERKRPATAKPVLLGITKASLETESFLSAASFQET
                     TRVLTDAAIKGKRDDLLGLKENVIIGKLIPAGTGMKRYSKVDIEKDEVTQPGLENQVT
                     VE"
     gene            complement(15722..19276)
                     /gene="rpoB"
                     /locus_tag="PTC08_000123"
     CDS             complement(15722..19276)
                     /gene="rpoB"
                     /locus_tag="PTC08_000123"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HDK5681661.1"
                     /translation="MAGQFVQYGRHRKRRNYARISEVLELPNLIEIQTKSYDWFLKEG
                     LLEMFRDISPIEDFTGNLSLEFVDYRLGEPKYDLEESKNRDATYAAPLRVKVRLIIKE
                     TGEVKDQEVFMGDFPLMTETGTFVINGAERVIVSQLVRSPSVYFNEKLDKNGRVNYDA
                     TVIPNRGAWLEYETDAKDVVYVRIDRTRKLPLTVLLRALGYSTDQEIIELIGDNEYLR
                     NTLEKDSTENTEQALLEIYERLRPGEPPTVENAKSLLYSRFFDPKRYDLASVGRYKAN
                     KKLHLKHRLFNQKLAEPIVNTETGEIVAEEGTVLDRRKLDEIMDVLETNANAQVYELP
                     NSIIDEPVEIQSIKVYVPNDDEERTTTVIGNAFPDSEVKCITPADIVASMSYFFNLLH
                     GIGYTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMSIQDTDSITPQQLINI
                     RPVIASIKEFFGSSQLSQFMDQANPLAELTHKRRLSALGPGGLTRERAQMEVRDVHYS
                     HYGRMCPIETPEGPNIGLINSLSSYARVNEFGFIETPYRKVDIETNTITDQIDYLTAD
                     EEDSYVVAQANSRLDENGRFIDDEIVCRFRGNNTTMAKEKMDYMDVSPKQVVSAATAC
                     IPFLENDDSNRALMGANMQRQAVPLLNPESPFVGTGMEHVAARDSGAAVISKYRGRVE
                     HVQSSEILVRRLVEENGQEVDGTLDRYPLAKFKRSNSGTCYNQRPIIAKGDIVEKGEI
                     LADGPSMELGEMALGRNVVVGFMTWDGYNYEDAVIMSERLVKDDVYTSIHIEEYESEA
                     RDTKLGPEEITRDIPNVSENALKNLDDRGIVYVGAEVKDGDILVGKVTPKGVTELTAE
                     ERLLHAIFGEKAREVRDTSLRVPHGAGGIVLDVKVFNREEGDDSLSPGVNQLVRVYIV
                     QKRKIHVGDKMCGRHGNKGVISKIVPEEDMPYLPDGRPIDIMLNPLGVPSRMNIGQVL
                     ELHLGMAAKNLGIHVASPVFDGANDDDVWSTIEEAGMARDGKTVLYDGRTGEPFDNRI
                     SVGVMYMLKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA
                     AYTLQEILTYKSDDTVGRVKTYEAIVKGENISRPSVPESFRVLMKELQSLGLDVKVMD
                     EQDNEIEMRDLDDDDIPDRKVNMQPSSVPESQKEFNEQ"
     gene            complement(19489..20097)
                     /locus_tag="PTC08_000124"
     CDS             complement(19489..20097)
                     /locus_tag="PTC08_000124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDK5681662.1"
                     /translation="MSHYYDAHPDAATDEKEITYAYQQHQLHLTTDAGVFSRDQVDFG
                     SDLLVHTFLNAHPPGQKKTIVDVGCGYGPIGLMLAKVAPHDHITMLDVNHRALGLAEK
                     NAQRNQLSNVTIQESDGLSQVANETQHYVVTNPPIRAGKQVVHQIFVDAHRVLEANGE
                     LYVVIQKKQGMPSAKKKMEVVFGNVESIKNSKGYHILKSVKS"
     gene            complement(20175..20540)
                     /gene="rplL"
                     /locus_tag="PTC08_000125"
     CDS             complement(20175..20540)
                     /gene="rplL"
                     /locus_tag="PTC08_000125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001273587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12"
                     /protein_id="HDK5681663.1"
                     /translation="MANQEQIIEAIKEMSVLELNDLVKAIEEEFGVTAAAPVAVAGAA
                     GGDAAAEKTEFDVELTSAGSSKIKVVKAVKEATGLGLKDAKELVDGAPSIIKEAMPKE
                     EAEKLKAQLEEVGASVELK"
     gene            complement(20581..21081)
                     /locus_tag="PTC08_000126"
     CDS             complement(20581..21081)
                     /locus_tag="PTC08_000126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="HDK5681664.1"
                     /translation="MSGIIEAKKQQVDVIADQLKGSVSTVVVDYRGLTVAEVTELRKQ
                     LREANVQYKVYKNTMLRRAAEKAGIEGLDEFLTGPTAVAFTTEDVVAPAKVIAGFAKE
                     HEALEIKSGIMEGSVITADEVKTVGSLPSHEGLVSMLLSVLQAPMRNFAYAVKAVGES
                     KEENAE"
     misc_feature    complement(21131..21271)
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00557"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="ribosomal protein L10 leader region; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /db_xref="RFAM:RF00557"
     gene            complement(21369..22064)
                     /gene="rplA"
                     /locus_tag="PTC08_000127"
     CDS             complement(21369..22064)
                     /gene="rplA"
                     /locus_tag="PTC08_000127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019468572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HDK5681665.1"
                     /translation="MAKKGKKYQEALNKVDRQALYTVEEAIRLAQETSIANFDASVEV
                     AFRLGIDTRKNDQQIRGAVVLPHGTGKSQRVLVFAKGDKIAEAEAAGADYVGDAEYVN
                     KIQQGWFDFDVVVATPDMMGEVGKLGRVLGPKGLMPNPKTGTVTMDVKKAVEEIKAGK
                     VEYRAEKAGIVHASIGKVSFETEKLVENFKTLQDVLTKAKPSSAKGTYFKSVAVTTTM
                     GPGIKVDTATFKL"
     gene            complement(22256..22678)
                     /gene="rplK"
                     /locus_tag="PTC08_000128"
     CDS             complement(22256..22678)
                     /gene="rplK"
                     /locus_tag="PTC08_000128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012664221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="HDK5681666.1"
                     /translation="MAKKVEKVVKLQIPAGKANPAPPVGPALGQAGVNIMAFTKEFNA
                     RTQEQVGLIIPVEIYVYEDRSFTFITKTPPAAVLLKKAAGIEKGSGEPNKNKVATVTK
                     DQVREIANTKMPDLNAADEEAAMRIVEGTARSMGIVVE"
     gene            complement(22843..23391)
                     /gene="nusG"
                     /locus_tag="PTC08_000129"
     CDS             complement(22843..23391)
                     /gene="nusG"
                     /locus_tag="PTC08_000129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001832303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusG"
                     /protein_id="HDK5681667.1"
                     /translation="MSEELGAKRWYAVHTYSGYENKVKKNLEKRVESMNMTEQIFRVV
                     IPEEEETQVKDGKAKKQMKKTFPGYVLVELVMTDESWYVVRNTPGVTGFVGSAGAGSK
                     PNPLLPDEVRFILKQMGMNEKSIDVEVELGEQVRITSGPFASQVGEIHEIEADKFKLT
                     VLVDMFGRETPVEVEFDQIEKL"
     gene            complement(23410..23589)
                     /gene="secE"
                     /locus_tag="PTC08_000130"
     CDS             complement(23410..23589)
                     /gene="secE"
                     /locus_tag="PTC08_000130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002509413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecE"
                     /protein_id="HDK5681668.1"
                     /translation="MPKKESFFQGVKSEMEKTSWPTGPELVKYTTIVVMTVLFFLLFF
                     WGLDIGIGQLIEMIK"
     gene            complement(23607..23750)
                     /gene="rpmG"
                     /locus_tag="PTC08_000131"
     CDS             complement(23607..23750)
                     /gene="rpmG"
                     /locus_tag="PTC08_000131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002451211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HDK5681669.1"
                     /translation="MKKVPLNCEKCGNRNYHVPKSPNVTERLILKKFCVKCNTHTLHK
                     ESK"
     gene            complement(23822..24394)
                     /locus_tag="PTC08_000132"
     CDS             complement(23822..24394)
                     /locus_tag="PTC08_000132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HDK5681670.1"
                     /translation="MAQIPNPNDIVSETIQRAQQQQPEAIEKLVHHIERIARKSFGDF
                     SVAQADCDDLVQDVVLAIYQKIQSEQFYFGVPFEHYIKRTIYRRKLDYRRKKLTHQRI
                     FEDYVDGYAISYRTQLAEQQRHSHEYLHYIQDTLQQTLQQLSAFEMRVLDYLIAEWRP
                     AEIARELNVSDKKVYNALYRIRQKLKSLLT"
     gene            complement(24471..24995)
                     /locus_tag="PTC08_000133"
     CDS             complement(24471..24995)
                     /locus_tag="PTC08_000133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002433453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NYN domain-containing protein"
                     /protein_id="HDK5681671.1"
                     /translation="MKDYYVIIDGYNMIGQSQKLSRVAKESLEEAREQLLIEISNYSA
                     VTKGKIVCVFDAYDRGTPQSEYEYHGVHVVFTKEHETADSFIERYVYNIYNKHTTHIT
                     VVTSDMSEQHAIFGTGAYRLSSREMWRHLKENKESVTKSMDEFGEMKPRTRIQLSEEL
                     LSEFEKIRRGKSRD"
     gene            complement(24999..25748)
                     /gene="rlmB"
                     /locus_tag="PTC08_000134"
     CDS             complement(24999..25748)
                     /gene="rlmB"
                     /locus_tag="PTC08_000134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (guanosine(2251)-2'-O)-methyltransferase RlmB"
                     /protein_id="HDK5681672.1"
                     /translation="MDLEIIVGRHAVREAVISGHTINKILIQEGIKKQQIEEILKVAK
                     SSKLVVQTVPKSKLDQLANAPHQGVAAFVAPYEYADLNQFLAEQAQKEGLSTVLILDG
                     LEDPHNLGSILRTADATGVDGIIIPKRRSVSLTQTVAKASTGAIQHVPVIRVTNLSQT
                     MDVLKDKGYWIAGAEASNATDYRQMQADMPLAIVIGSEGQGMSRRVKEKCDFYIKIPM
                     VGHVNSLNASVAASLMMYEVFRKRQPIGGDK"
     gene            complement(25754..26155)
                     /locus_tag="PTC08_000135"
     CDS             complement(25754..26155)
                     /locus_tag="PTC08_000135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mini-ribonuclease 3"
                     /protein_id="HDK5681673.1"
                     /translation="MDKPTNAKLLNPLSLAYVGDAVLDQYVRTYIILKLQSKPNRLHQ
                     EAKRFVSAKSQAVTLEHLIAQDWFNEEELAVVKRGRNAKSYTKAKNTDVQTYRKSSGL
                     EAIIGFLYLEHQEERLEALLKVIVENVEERR"
     gene            complement(26148..27548)
                     /locus_tag="PTC08_000136"
     CDS             complement(26148..27548)
                     /locus_tag="PTC08_000136"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000631968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HDK5681674.1"
                     /translation="MITLYNTLTRQKEVFQPIEPGKVKMYVCGPTVYNYIHIGNARPA
                     INYDVVRRYFEYKGYEVNYVSNFTDVDDKLIKRSQELGETVPEIAERYIQAFYEDTEA
                     LNVKKATSNPRVMDHMDDIIKFIKKLVDEGYAYESGGDVYFRTRQFEDYGKLSHQSID
                     DLKVGARIEQGENKEDALDFTLWKKAKPGEISWESPFGEGRPGWHIECSVMAFEKLGP
                     TIDIHAGGSDLQFPHHENEIAQSEAHNHETFANYWMHNGFINIDNEKMSKSLGNFILV
                     HDIIKEVDPDVLRFFMISVHYRSPINYNLELVEAARSGLERIRNSYQALTERETVATD
                     LTNDATMLTQIDAILTQFETVMDDDFNTANAITAWYDLVKLANKYLLEDNTSTQVIQR
                     FKEVFAIFSDVLGVPLTSNHVEGLLDEEIERLIEERNAARQAKDYARADEIRDQLKAQ
                     NIILEDTPQGVRYKRG"
     gene            complement(27532..28197)
                     /gene="cysE"
                     /locus_tag="PTC08_000137"
     CDS             complement(27532..28197)
                     /gene="cysE"
                     /locus_tag="PTC08_000137"
                     /EC_number="2.3.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine O-acetyltransferase"
                     /protein_id="HDK5681675.1"
                     /translation="MLFEGGVKVFRRMMDDVKMVFEQDPAARSTIEVITTYAGLHAVW
                     SHLIAHRLYQKKRYVLARAISQASRFFTGIEIHPGAKIGRRLFIDHGMGVVIGETCTI
                     GDNVTIYQGVTLGGTGKEKGKRHPDIGDNVLIAAGSKVLGNIKVHSNVNIGANSVVLQ
                     DVPSYSTVVGIPGRIVKQDGRRIGKTFDHLNLPDPIYEQLKQLERQLEQTKNGEIKDD
                     YII"
     gene            complement(28585..30039)
                     /locus_tag="PTC08_000138"
     CDS             complement(28585..30039)
                     /locus_tag="PTC08_000138"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000415154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HDK5681676.1"
                     /translation="MSNRVRVRYAPSPTGYLHIGNARTALFNYLFAKHYDGDFVIRIE
                     DTDSKRNLADGESSQFDNLKWLGLDWDESVDKDKGYGPYRQSERGEIYQPLVEQLLAE
                     DKAYKCYMTEEELEAERQEQIARGEMPRYGGKHAHLTEEERQQFEAEGRKPAIRFRVP
                     QNKTYTFDDMVKGPVTFESDNFGDWVIVKKDGVPTYNFAVAVDDHYMEISDVIRGDDH
                     ISNTPKQLMIYETFGWEPPRFAHMTLIVNEQRKKLSKRDGQILQFIEQYRDLGYLPEA
                     LFNFIALLGWSPEGEEEIFSKDEFIKIFTEKRLSKSPAFFDKQKLEWINNQYMKEKDA
                     ETVFEMTLPHMIKAGLLPESPSEAELDWGRKLVALYQEQMSYAGEIVPLSELFFRDEK
                     ELDEASQEVLNGEQVPQLMTALYGKLEALENFEAAEIKKIIKEVQKETGIKGKQLFMP
                     IRVAVTGQMHGPELPNTMEVLGQDKVLRRIQSLL"
     gene            complement(30116..30595)
                     /locus_tag="PTC08_000139"
     CDS             complement(30116..30595)
                     /locus_tag="PTC08_000139"
                     /EC_number="4.6.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 2,4-cyclodiphosphate
                     synthase"
                     /protein_id="HDK5681677.1"
                     /translation="MFRVGLGYDVHAFDATRPLIIGGIEVPHTHGLKGHSDADVLLHA
                     ITDAMLGACALGDIGKLFPDTDPQFKDADSKKLLTEAYAEVQKEGYVINNIDATIIAE
                     KPKFRPYIDEMRAIIAGLFAVDIKRVNVKATTSEKLGFTGRQEGIAAQAIVSLTATT"
     gene            complement(30588..31286)
                     /gene="ispD"
                     /locus_tag="PTC08_000140"
     CDS             complement(30588..31286)
                     /gene="ispD"
                     /locus_tag="PTC08_000140"
                     /EC_number="2.7.7.60"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 4-phosphate
                     cytidylyltransferase"
                     /protein_id="HDK5681678.1"
                     /translation="MSNYHVIIPAAGKGSRMGRPYNKLFIEVAGRRVLEHTLSVFQSD
                     VQCEGIHLAIHERDRDQLEVLTGPFSKVKSLVVGGETRQDSIHQVLQNVEFTNDDIVL
                     VHDGARPFVTHDTIHEVTAAIRTYGAAIVGVKAKDTIKRVSDQFVTETLDRATLWQVQ
                     TPQGATFELLASAYDHAKTQQMMGTDDASLIEAYGQRIYMVEGDYDNIKLTTEEDLTY
                     AEAILEKRSRHHHV"
     gene            complement(31287..32348)
                     /locus_tag="PTC08_000141"
     CDS             complement(31287..32348)
                     /locus_tag="PTC08_000141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PIN/TRAM domain-containing protein"
                     /protein_id="HDK5681679.1"
                     /translation="MDFIKLLVIVSYIIIGSVLGILLIPAVMIDFNVSHPPMMENSYV
                     TSIMGVAIMFLLFGWFIPRIAYAMKDLEQFVLGYSAIEIIFATIGLFMGLLISVMISF
                     ILEFIGTDLINRIVPILLTLSLSYLGFQFGLKKRDEMLLFLPENMARSMAINARNAVP
                     KIIDTSAIIDGRILKIMEAGFIDGEILIPQGVINELQVVADANDSIKRDKGRRGLEIL
                     SAIHLSKHPTRIIHPQRTHQDIDDLIVRLAQHYRAHVITTDYNLNKVCSIQGIKVLNV
                     NDLSDAIRPEVHQGDRFDLMITKVGKEPGQGVGYLDDGTMVVVDDAKQYVNETITLEV
                     ISMLQTASGRIIFAKKVEA"
     gene            complement(32367..33737)
                     /gene="radA"
                     /locus_tag="PTC08_000142"
     CDS             complement(32367..33737)
                     /gene="radA"
                     /locus_tag="PTC08_000142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499080.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="HDK5681680.1"
                     /translation="MAKTKTIFECTACGYQSPKWMGKCPNCGAWNSMEESFEQKTASP
                     KHGVRAQKTSSAKIQKLDDIKQELAPRIQTNSGELNRVLGGGIVEGSLVLIGGDPGIG
                     KSTLLLQMCAALSKEKRVLYITGEESLNQTKIRADRLDEDASQLNVFAETDLMVIHEA
                     VKKVEPDLIVVDSIQTIYHPEISSAPGSVSQVRESTQSLMHIAKQMNVATFIVGHVTK
                     EGQIAGPRLLEHMVDTVLYFEGDEHHAYRILRAVKNRFGSTNEMGIFEMKQSGLKSVL
                     NPSEMFLEERTTNVAGSTIVATMEGTRPLLIEVQALVTPTTFNNPRRMATGIDHNRLS
                     LLMAVLEKKEGYLLQQQDAYIKVAGGVKLSEPAVDLGIVIATASSFKDQAVDGLDCYI
                     GEVGLTGEVRRVSRIEQRVQEAAKLGFKRVIIPKNNIGGWHFPEGIEVIGVTSVNEAL
                     KYALKN"
     gene            complement(34124..34870)
                     /locus_tag="PTC08_000143"
     CDS             complement(34124..34870)
                     /locus_tag="PTC08_000143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDK5681681.1"
                     /translation="MKKAKSFLYLTQLNTRRIFRDFKYVLLIIALPMFFYVIYSEIFP
                     QNAAVNGISWKEYSLISLICFGIMGNAINLLGTKVANEKNDNWYAYLKVSVINPNAYM
                     MSYLFSYFLISFIFSVAMILLGYFYNDIHIAFYKLVEIVILLNVFSFAFLFLALIIGQ
                     LGSAAQPIGTIVYLLLSFLGGLWIPVDAMPKHMQAFAEILPSYRYGHIGWSILSEGCI
                     HIEDVLYLIGYAILFFIIFLVLSKVNGKNK"
     gene            complement(34857..35561)
                     /locus_tag="PTC08_000144"
     CDS             complement(34857..35561)
                     /locus_tag="PTC08_000144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDK5681682.1"
                     /translation="MGNIFEINDVSKTFGKNKVLDAVDLSVNQGEIVGLLGLNGQGKS
                     TLIKIVLGLLKQNSGKVIKNIDFKQQCGVVLQEVAMPEKMKVKEWLELLKSYSEHQQD
                     TDDILKEVDLVKEKNQYCTRLSGGQKRRLQYAAALVNCPQFLVLDEPTTGMDVASKEL
                     FWEHVRSKVEEEKMSVLLISHDLEEIAAFATRIVILHKGKIVLNEQVEVLFNTFDHKG
                     DKLKKIFKEKVLYEKG"
     gene            complement(35576..>35826)
                     /locus_tag="PTC08_000145"
     CDS             complement(35576..>35826)
                     /locus_tag="PTC08_000145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5681683.1"
                     /translation="ELFLLISFTEDVKRDFNLDIEKMLDAYDIHESIDINNGEQAYTY
                     KENLSVIYLSPKFLMNSIPPVNEEAIRITQQMIQKIIR"
BASE COUNT        10027 a         7836 c         6214 g        11749 t
ORIGIN      
        1 ccgcaatgga taccattatt atggatgcaa tcacacctga tgttgaaagg tacatttata
       61 aaattgatta ttggttgacg aatcttgcat tagcatttgg tgctttaatg ggggggatac
      121 tttatcataa taacaaatcg acacttttct ttattgcatt tttgattttt atacttgtat
      181 ttctttcttt attaagatgg ctcccaaaag agacccatgt gactgaaaaa cgatcacttt
      241 caatgcaccc tttcaatgtt ttaaaaagtt atgaacaggt attcaaagat cggcgtttta
      301 tggtgatgac cttagggtct agcattatga tgatgggcga actatctgcg tcttcgtata
      361 ttgctattcg tttaaaagca gaatttaata ctatttcggt tgcttttttt aatatagacg
      421 gcgttaaatt gtattctctt cttatgattg tgaatacaat tgttgtgatt acatgtacat
      481 atttcgtgac aaaaattatt ttaaaactct cagtcaaaaa atcattaata cttggtctca
      541 tattttacgt catcggctat gcgagtataa cctatttaaa cgagttttat tcactcattt
      601 tattgatgtt catagctacc attggagaaa tcatttattc cccaatttta gatgagcagc
      661 gcttcaaaat cattccagaa aataaaagag gcacatattc tgcttttaat gcattgggtt
      721 ttaatttgtc agaactcatt gcacgattag ggattatttt aggtgtttac ctctcctcta
      781 taggcatggg catctatatg tttatttttc taagtatcgg tgcttttttc atctatcttt
      841 caatatatgg gaactttaaa cttcaaaccc cttctcaaaa taaagttgag tccatagagt
      901 aactttttat gaccatcaga agatattgct ttctacaatg tttacaattc ttctggctga
      961 atcaaaccct ctgtgtgaac gggtggtttg ttcttcggct gaaatcctct gttactgacc
     1021 atcccttgta agggcactga gaagagcagc caactgtact actttctcag caccccttaa
     1081 aagggttcta tttttttctc aaccttttgt tctcttcccc tgtaaatgaa tctatatatt
     1141 ccatcattgt gcgtttttct gctacgatat cctcttgtaa ttgatttcga atgtgttctt
     1201 ctattacctt tttatttctt acaaccgtat ctacataaaa tcctttgcac taaaattttc
     1261 tatccccata tctatatttc aaatgtacat gtctatcaaa aatcattaaa ctacttttac
     1321 cttttaaata tcctactaat tgagaaacac ttagttttgg tgggatactc accagcatgt
     1381 gtatatgatc tttacatgct tcagcttcta ttatttctac accttttctt tcacatagtt
     1441 gtctcagaat taaacctata tctcttttta atttcccata tattatttgt cttctatatt
     1501 taagtgcaaa aactatgtga tacttacaat tctgttatta acaaaaacta gaacaacagc
     1561 gaagtgcatc atgtcctagt ttttcatttt caacaacttt ttattggaat gagaaaaaat
     1621 ctgcgcctct ctttatatcc ttacccgtat ctatcttgta tggtgttgaa aaccttttat
     1681 caaagctgaa ccctatcaac ttattcttta tctacgtctc ttcgtttatg ctttatgact
     1741 ttctttttca cgaatacctt caagcatacg gactgtcatt ttctccaagt catactgtgg
     1801 attaaagccc cattcgccac gtgcacaact cgtatcgata ctatctggcc aactttccgc
     1861 gatatcttga cggactggat caacatcata cgttaattta aagtctggaa tatgtgcttg
     1921 aatcgcttcc ttaatcattt caggttcaag actcatcgca ctcaagttat aggcattgcg
     1981 atggatgagt ttgccaccat ctgcttccat taattgaata atcgcatcaa tcgcatcatc
     2041 cataaacatc atatccatat acgtgtcttt ttgaatatag ctcgtatatt taccttctct
     2101 cacggcttgg aaataaatat caaccgcata atccgtcgtg ccaccacccg gctctttaac
     2161 gtatgaaatg agccctggga atcgcacgct acgagtatcc acaccaaact tagtaaagta
     2221 atagtcacat aacaattctc ctgatacttt gttgacgccg tacattgtat ttggacgttg
     2281 aatggtcact tgtgctgtat ttttcttagg tgtgtctggt ccaaacgcac cgattgaact
     2341 tggtgtaaaa aattgtaagt tgtattcacg tgctgcttct aatgcgttca ctaaaccacc
     2401 catgtttaag ttccatgcga gtaacgggtt ttgctcacac gtcgctgata acaatgccgc
     2461 catgtgcatc aacgtgtctg gtttaaatga ttccactaat tgaaccattt tgtctgcatc
     2521 tgtgacatca agaatttcaa atggtcccgc tgccacaata gaattcgctt ccggttcacg
     2581 aatatctgtc gctaacacat tttcattgcc gtagatttca cgacatctcg caaccaattc
     2641 cgttccaatt tgccctaacg caccggtaat cataattctt ttcatcatct tccatctcca
     2701 atctgtttct ctcatgtgga catatgtatt ctatgtacaa tcattccatg tcatatacac
     2761 tcagattata tcacttaagc gctttcttgt acacgtatca tatacattaa aatacagtag
     2821 aacccgtaaa acttcaaata aaaataaaaa gaggcagccc accctcagat gcactccctc
     2881 tacttactta tgctattcga taatgccgag ttctttaccg acacgcgcat acacttctaa
     2941 tgcttgatct aacatttctg ttgtatgtgc agcagttggc atgttacgta cacgacccgt
     3001 accacgcgga actgttggga acacaatcga tttcacgtaa atgccttctt ccatcaaacg
     3061 tttactgaat tgttgtgttt tcttttcatc cccaataatc acaggtgtaa tcggtgtttc
     3121 agattgacct gtatcaaagc ctaggcgtga taagccctct tttaagtaat tcgcattttc
     3181 ccataaacgg tcatgcaatt ctgttgaagc cattaacttt ttaactgctt cagtaatcgc
     3241 ctttgtatct ccaggcgcta atgaagttga gaataagaat ggacgtgatt gcgcttttaa
     3301 ccaatcaatc aatttttgtg aacccgcaac ataaccgcca acaacaccaa tcgcttttga
     3361 taatgtaccg atttggaagt cgactttatc ttgcaagcca aaatgtttca ccgttcctgc
     3421 acctttaccc atcacacctg aaccgtgtgc atcgtctaca tacaccataa tgccatattg
     3481 ttcacaaatt tcgacgattt caggtaattt tgcaacgtcg ccgtccatac tgaagacacc
     3541 gtcagtaatg tacatcactt tgttgtattg tcccgattca acagcttctt tcgctttttg
     3601 acgtaaatca tccatatctg aatggttcac acgaataatt ttcgcttttg ataaacgaca
     3661 cccatcaata attgatgcat ggttcaattc atcagataag atcgcatcat ttttattcat
     3721 cacggctgaa atagctgcca tgttacagtt aaagcctgat tgatatgcga cagctgcttc
     3781 tgtccctttg aactccgcta acgttgattc taactcatca tgtaagtcta atgtcccgtt
     3841 gattgaacgt accgcaccag caccgacacc atgtgaatca atcgcgtttt tagcagcagt
     3901 ttttaaatct tcatttgtcg ctaagcctaa atagttgttt gatgacaaat tgatatattt
     3961 cttgccgtta atttgaattt ctggcccatt tgcaccttca actgtatcaa tttcattata
     4021 cagtccattt tcttttaaat gattcaaatt ttcatcaaga aagtcgttta attgttgtac
     4081 cacctgaatt tcccctttca cttttaaatc tccttaatca taacgcattt tgaacaaact
     4141 taaaagcagg tgtataataa atgccataat caaattgaag gagagaacaa gcgtgacgga
     4201 ttggttccaa ttggcttatg acaaagaaca ggagatggtt caaacacggc gctatctgca
     4261 tcaaaatcct gaattgtcat ttcaagaaac aaaaacacat gcctatattt tgcaacgact
     4321 tcaacaatta aattttgaaa ttgaggaaaa agtaggacgc aacggtatta ttgcacgaat
     4381 cacaggggat gaatcaggtt caacaattgc attacgtgcg gattttgatg cactcccgat
     4441 tgaagattta aaagaggtgc cttatcgttc tcaagttcca ggtgtcatgc atgcgtgtgg
     4501 tcatgacggc catacgacga ttttattgac cgtcgctgaa ttactacatg cgcatcaaac
     4561 tcaattaaaa ggaacagtcg tcttaatttt tcaatatggt gaagaagtga tgcctggcgg
     4621 tgcgcaagaa atgattgcag ataacgcctt gatgggtgtc gataaaatat atggcaatca
     4681 tttatggagc ggttatccga ctgggacgat tcacacacga ccaggtccga tgatggcaca
     4741 acctgacgaa tttaacatca ctattcacgg taaaggcggt cacggggcta aaccacacga
     4801 aacgattgat ccgattgtca tccttgcaga gtttatttta agcgcacaaa aaatcgtttc
     4861 tcgtacatta gatcctgtca aacaagccgt aatttctttc ggtaaaattg aagccggtga
     4921 agcagataat gtgattcctg atacagcgac ttgtcgtggc accgtgcgca ctttcgaaac
     4981 agatgtccaa gcccatattt atcacaagat ggatttgtta ctccaaggac tcgcgctcgc
     5041 taacgacatc acttatacat ttgactacat taaaggctat ttacctgttt acaaccacga
     5101 agcatcagca gaaatcgtta aaaatgctgc tcatgcgttg aacttccgat accaagagtc
     5161 cgatttaatg atggttggtg aagacttttc attttattta aaagcaagac ctggcgcatt
     5221 tttcttaact ggttgtggta gcgctcaaaa aggcacggat tggccacatc acagtccgca
     5281 ttttgatatt gacgaagatg cgatgaaata cgccgtgagc acatttatga agattttaga
     5341 acttgaaggg atattcaaag atgaactgaa aagaacatga cgaagatagg atacaaaaag
     5401 ttttgatgct attgctgcaa tcatttcgtt taactttccc tctctctatg atttatattt
     5461 ttgattgcct tcacggcttc gcgttccgag gggttggtcc ttcaacgcac taacgcttga
     5521 ttaaactgtt atatgggttg aggtgttatt ggattttggg agcagtacag aaatctcatt
     5581 tacatcaaat atttcgtcgc actgcctccg catggctgat tcgacttctt aaaagtgtag
     5641 acattgagaa gtcatacagc tactgcgata aacagtaacc actattaaag agaagagata
     5701 actgtcagca gtttgcacgc attccctcag gagtcttagt gtactgggca gtttgatatc
     5761 aaatacagcg aaactgagcc caagtttatc aaatcaagaa agccatagta tcaattttgt
     5821 atcccattcg cactcatttt ccaacagttt taaaatcatt aataaataat caatctataa
     5881 ttcgttgaaa tggggctggg aaaacttgat gtcccggctc cgtttccttt tctctataaa
     5941 atttcacact gaaaggaatg ttacgatggg agatatactc tatcaacatg ggacactggg
     6001 tacactcatg gcaggattat tagaaggcac tgcaacaatt caagacatcc tcaaacaagg
     6061 tgatgcgggt ttaggcacgt tagctggatc ggatggtgaa gtcattttta tagacggcca
     6121 agcatttcac gccaatgcgc aaaacgaatt cacgcaactc actggagaag aactgacgcc
     6181 tttcgcgacg atcacacgat tccgagcaca tcatacgttt aaaacgacca atcaatccgc
     6241 acaacatgca ttatcacagg tccgcaccaa aatgcgtagt caaaatgcct tttcagcagt
     6301 caaaatcact ggaacatttc aacatatgca tgtgagaatg atgccgggac agacccctcc
     6361 ataccgtcgc ttaattgaat ccgctcagca acaacccgag tatacacgat ccaatatttc
     6421 aggcacactc attggctttt atacacccga actgtttcat ggcattggcg ctggtggctt
     6481 tcatattcac tttgccgatg atgcacgaac attcggtgga catgtattag attttcacat
     6541 tgaagcagct aacgtcgaaa ttcaagattt tgagacgctg acacaacatt ttccagtcaa
     6601 ttatcgttct ttcacagagg ctgaaattga ttatgaggat attaatgaag aaattagaga
     6661 agttgagtaa agttttaaag cagtgtctaa aaattgacgc aaatatcccc cttttcaact
     6721 ttacaggcta taaaaaagag ctggccgagg ccaactcttt tttatctata tttgtgatag
     6781 attattgttc gatgttagtt acaacgcctg atcctacagt acgtccacct tcacgaattg
     6841 agaaacgagt accgtcttcg atagcgattg gagaaattaa ttcaacttcc atttcaacgt
     6901 tatcgccagg cattaccatt tcagtacctt ctggtaagtt tacaacacca gttacgtcag
     6961 tagtacggaa atagaattgt gggcggtagt tagagaagaa tggtgtatga cgaccacctt
     7021 cgtcttttga taatacgtaa acttccgctt taaattttgt gtgtggtgtg attgaaccag
     7081 gagcagctaa tacttgacca cggttgatgt cttcacgtgc aacaccacgt aataaagcac
     7141 caatgttgtc accagcttca gcgtagtcta ataacttacg gaacatttct acaccagtaa
     7201 cagttgtttt agaagattct tcagttaaac cgatgatttc tacttcgtca ccaactttga
     7261 tttgaccacg ttcaacacga ccagtagcaa ctgtaccacg accagtgatt gagaatacgt
     7321 cctcaacagg catcatgaat ggtttgtctg agtcacggtc tggagttgga atgtaagtgt
     7381 ctacagcttc cattaattct aagatttttt cttcgtattg tgcatcgcct tctaaagctt
     7441 ttaatgctga accagcgatt acaggtacgt catcacctgg gaagtcgtat tcagataata
     7501 agtcacgtac ttccatttct actaattcta ataattcttc gtcgtctacc atgtcaactt
     7561 tgtttaagaa tacaactaat gctggtacac caacgttacg tgataaaaga atgtgctcac
     7621 gagtttgtgg cattggacca tcagcagcag atactactaa gataccaccg tccatttgag
     7681 cagcaccagt gatcatgttt ttaacatagt cagcgtgtcc tgggcagtca acgtgtgcat
     7741 agtgacgttt gtcagtttgg tactcgatgt gtgaagtatt gattgtgata ccacgttctt
     7801 tttcttctgg agcgttgtca atcatgtcgt atgattgtgc aactgagtca ccatgttttg
     7861 ctaatacagt tgcgattgca gctgttaaag ttgttttacc atggtcaacg tgaccgatag
     7921 taccaatatt ggcatgttct tttgagcgat cgaatttttc ttttgccatt atgaaatctc
     7981 tcctctttga ttaagaatta ttatttttat atctctcatg aaagttactc accaacatga
     8041 gatagataat gttatttcct ttataaatca tttcttggaa aaaatcaatt taaaaaccag
     8101 tcgctatttg agttaccctc aagggcgacg tgtcaaacta agatgatgaa ttattcacct
     8161 ttgttctttt taatgatctc ttcagaaatt gatttaggta cttctgcata gtgatcgaag
     8221 tacatagtgt aagtaccgcg accttgcgtg ttagaacgta atgaagttgc gtaaccgaac
     8281 atttctgaaa gtggtacata agcgttaaca acttgtgcgt taccacgtgg ttccatacca
     8341 tctacacgtc cacgacgagc agtaacgtca cccatgatgt cacccatgta ttcttcaggc
     8401 atttcgatag tgactttcat catcggttct aagataactg gatcacattt tttagcagct
     8461 tctttaagtg ctaaagatgc agcaattttg aaggccattt cagatgaatc gacatcatgg
     8521 tatgaaccat caaataattt agctttaaca tcgattaatg gataaccagc taatacacca
     8581 ttttccattg cgtctttaag accttgttca actgatggga tgtattcacg aggaacaaca
     8641 ccaccaacga tagcgttttc gaattcgaaa cctgcgcctg tttcatttgg tgtgaattca
     8701 atgtgaacgt caccatattg accacgacca ccagattgac gagagaattt accttgaacg
     8761 gctgcagaag atttgaatgt ttcacggtaa gataccattg gggcacccac gtttgcttct
     8821 acattaaatt ctttcttcat acggtcaaca atgatgtcaa ggtgaagttc acccatacca
     8881 ccaatgataa cttgaccagt ttcttcatct gtgtgcgctt tgaaagtagg gtcttcttct
     8941 tgaagtttca caagcgcttg agtcatttta tcttggtctg cttttgattt aggttcaact
     9001 gataagtgaa taactggctc tgggaattcc attgactcaa ggatgatgtc atttttctct
     9061 ccacaaagtg tatcacctgt accagtgtct ttaagaccta cagctgctgc gatatcacca
     9121 gaatatacag tgctgatttc ttcacgtgag ttggcgtgca tttgtaaaat acgacctaca
     9181 cgttcacgtt tacctttagt tgagttttta acgtatgaac ctgaagttaa agtaccagag
     9241 taaacacgga agaaagttaa tttaccaacg taagggtcag tcataacctt aaatgctaat
     9301 gcagcgaatt ctgcatcgtc gtccgcttta gcgataactt cttcatcagg atcatccgca
     9361 cgatgaccaa cgattggttt aacgtctaaa ggtgatggaa ggtagtcaat tactgcgtct
     9421 aacattaatt gaacaccttt gtttttgaat gctgtaccac aaagtactgg gtagaactca
     9481 acatctgttg ttgcttgacg gattgcgtct ttaagctcat caacagtgat ttcttgttct
     9541 tcaaagattt tttccattaa gctttcattt gtttcagcaa cagcttcaat caatgcttca
     9601 cgtgcttctt cagcgcgctc acgatagtct tcaggaattt cagtttcttc aatttcagtt
     9661 cctaaatcgt tcgtgtattt gaaacatttc attgttacta agtcaatgat agctgagaat
     9721 tcatcttcag caccgattgg taattgaatt ggtgcagcat tggcttgtaa acggtcatgt
     9781 aaagtgctta cagcgtaatc gaagttagca ccgattttgt ccattttgtt tacaaatacg
     9841 atacgaggta caccgtaagt tgttgcttga cgccaaactg tttcagtttg aggttctaca
     9901 cctgattgcg cgtcaagaac tgttaccgca ccatcaagta cacgcaatga acgttcaact
     9961 tctacagtga agtctacgtg cccaggtgtg tcgatgatgt ttacacggtg atttttccat
    10021 tcagcagttg tagccgctga agtgatcgta ataccacggt cttgctcttg ttccatccag
    10081 tccatttgtg aagcaccctc atgtgtttca ccaattttgt ggatacgtcc agtgtaataa
    10141 agaatacgtt cagtcgtcgt cgttttacca gcatcgatgt gcgccatgat accgatatta
    10201 cgagtgttct ttaaagaaaa atctcttccc atgggtattc tttctccttc cagaatatag
    10261 gattatatga ttagatatag ctttacccta agcatgtata gaactgttca atcaacggct
    10321 aaaaagcagg ttgatggcac tatacagaaa ttgctcaggg aattcgcaaa tatcttacca
    10381 gcggtagtga gcgaatgctt tgttcgcttc agccattttg tgagtgtcct cacgtttctt
    10441 aactgcacca ccagtgttgt tagctgcgtc taagatttcg ttagctaaac gctcttccat
    10501 agttttttca ccacgaagac gcgcatagtt tactaaccaa cgtaaaccta aagtagtacg
    10561 acgctctgga cgaacttcta caggtacttg gtagtttgaa ccacctacac ggcgagcttt
    10621 aacttcaagt actggcataa tattgttgat tgcttcatcg aaaacttcca ttgcatcacg
    10681 accagaacgt tcttgaacta agtcgaatgc tgagtaaaga atacgttgag cagttccacg
    10741 cttaccatct aacataatct tgttgattaa ttttgttact aacttagagt tgtgaattgg
    10801 atctggtaac acatctcttt taggtactga tcctttacga ggcataatac aagtcctccc
    10861 ttcctattat agtatatttg atttctttca tcatgattaa atgagatttt tacaatcttt
    10921 taatcttatt ttttaggttt tttagtaccg tataatgaac ggctttgcat acgaccgtca
    10981 acacctgacg tatctaatgc accacgaacg atatggtaac gcacaccagg taagtctttt
    11041 acacgtccac cacgtacaag tacaacactg tgttcttgta agttgtgtcc gataccaggg
    11101 atgtatgcgt tgatttcaat gttgtttgat aaacgcacac gcgcatattt acgtaacgct
    11161 gagtttggtt ttttaggagt cattgtaccc acacgtgtac atacgccacg tttttgtgga
    11221 gaattcaatt tagtgaattg tttcttttga ctgttaaaac ctctatttaa agctggtgaa
    11281 tcagattttt tagttttgct ttgtcttggt ttacgtacta attggttaat agtaggcatt
    11341 caagtttcct cctctcttca tttcttaatc ccacacatcc aggtggttca tttttgggtt
    11401 aaataaaatt tagtaagcat catacttact aatctcactt gagcaaagca acgactgtcg
    11461 cctttacatt tataccaaca tattctccaa gtgcttgtcg acttgagaag aattcgatag
    11521 gtatcatatt ttgattggca aagcttaaca cgcgcgcgag caaatgcaca ttcacatctt
    11581 cgccgataat cagtttgttt acgcgttgat tacgaagcgc ttttaacgtc tccttaagac
    11641 caaccacgta ggcttgtttg tcaaagcgtg tgactttttc attagacatt tacatatcct
    11701 ccaaagtact gcttgcatca acctttacta tattatcatt ttagcaaatc gttcgtcaac
    11761 agttattcga aaatattctg tgattttgtt gaagattttc acagtcagtt cgaacaagaa
    11821 gtcaccgata ttgatgactt ctgttcaact cactggaaat gaaaagttat tccacagtca
    11881 cttgattttc aagacctggc tgtgtcactt catccttttc aatatcaact ttactgtaac
    11941 gtttcatacc tgtacctgca gggattaact taccgataat aacgttctct ttaagaccga
    12001 gaagatcatc acgtttacct ttaatcgctg cgtcagttaa gacacgtgtt gtttcttgga
    12061 atgatgctgc agataagaag ctttctgttt caagagacgc ttttgtaata ccaagcaata
    12121 ctggtttggc agttgctgga cgtttacgct ctttaaacgc ttcacggttt gcatctgtga
    12181 agttgtggat gtcaacaagt gaacctggta ataatttcgt gtcaccagct tcaatgatac
    12241 gcactttacg taacatttga cgtaccataa cctcaacgtg tttgtcgtcg atttctacac
    12301 cttgcatacg gtaaactttt tgtacctctt taagtaagta ctcttctgtt gctgttaaac
    12361 cagcgataga caggaagttt ttcggctcga ttgaaccttc cgttaagact tcaccacgtg
    12421 caactgattg accgatttcg actttcagac gtgatgttcc tgatgcaagg taagaacgtg
    12481 tttcgttagc acctttgaca acgatttctt gttgtctgtc tttacctact gtgatgttat
    12541 caatgacacc ttcaatttca gtaatcactg cttgaccttt agggttacgt gcttcgaaaa
    12601 tctcttggat acgaggtaaa ccttgcgtga tatcgcttcc ggctacccca cctgtatgga
    12661 acgtacgcat tgttaactgt gtacctggtt caccgattga ttgtgcagcg atagttccga
    12721 ctgcttcacc gacttctact ttttcaccag ttgctaagtt tttaccgtaa catttttcac
    12781 atacaccgtg acgtgtgtta catgtaaatg cagagcggat gtacatttct tcaatacctg
    12841 catccgtaat ctctttcgca atttcaggtg taatcaattc atccggacga atgatgattt
    12901 cgtctgtctc tggatgacgt actgtttctt tagaataacg accttcaata cgttcgataa
    12961 atggttcgat catttctgta ccttctttga tatctgaaac gagtaaacca cgatccgtac
    13021 cacagtcttc ttcacgtacg ataacgtctt gagcaacgtc aacgagacga cgtgttaagt
    13081 aacctgagtc ggcagtctta agtgctgtat cggcaagacc tttacgcgca ccgtgagtag
    13141 agataaagta ctctaatacc gttaaacctt cacggaatga tgatgtgatt ggaagttcga
    13201 taattttacc tgatggcgcg gccattaaac cacgcatacc agcaagttgc gtaaagttag
    13261 aggcgttacc acgggcacca gagtcactca tcatgaagat tgggttcgtc ttatcaagag
    13321 acttcatcaa tttcgcttgg attctatctt tcgcatttgt ccaaatttca ataaccgcat
    13381 tgtaacgttc ttcttctgtt aataaaccac ggttaaattg tttttggacg cgttcaacta
    13441 atttctcaga ctcgtctaaa atctcttgtt tatccggtaa taccacgatg tcagctacac
    13501 caactgtaat acctgctttt gaagaatatt tgaaacctaa gtctttcatt aagtcaagca
    13561 tcatagacgt atctgtaatg ctgaagcgat tgaacacttc tgcgataatg tttcctaaga
    13621 attttttgtt gaatggtggc acaagttcag tgttttcaaa gtactcagct aagccacctt
    13681 ctccaagttc agatgcatca acgaaatatt tatcaggtgt actcttttct aagttcgtcg
    13741 ctgttggttc gttaatgtat gcaaatgaat ctggaataat ttcgttaaag atcactttac
    13801 ctacagaagt tgttaagatt ttgcgatttt gctcttcggt aaatgttggg ttgttgaatg
    13861 atgacgcttg aacaccgata cgcgtatgca agtgaacgtg tccattcgca taagctttaa
    13921 tcacttcatt tgtatcattg aacatcatac ccgtattgac tgcatcttta cgctctaatg
    13981 ttaagtagta gttacctaaa accatgtcct gagacggtgt cacaactggt ttaccatctt
    14041 tagggttcaa gatgttttga gcggcaagca ttaacatacg tgcttcagct tgtgcttctt
    14101 ttgataaagg tacgtgaacc gccatttggt caccatcaaa gtcggcgtta taagctgtag
    14161 ttacaagtgg gtgtaatcgg atcgcacggc cttcaactaa agtcggctcg aacgcttgga
    14221 tacccaatct gtgtaatgtt ggtgcacggt taagtaatac tgggtgttcg ataatcacat
    14281 cttctaatac atcccaaact tcatcttctg tacgctcaat tttacttttc gcgtttttga
    14341 tgtttgtcgc aatttcacgt tgtacaagtt ctttcatgac aaacggcttg aacaattcta
    14401 atgccatttc ttttggtaga ccacattgat acattttcaa gtttggtcct accgcgataa
    14461 ctgaacgacc agaatagtct acacgtttac caagtaagtt ttgacggaaa cgaccttgtt
    14521 tacctttcaa catgtgtgaa agtgatttaa gcggacggtt acccggacct gttaccggac
    14581 gaccacgacg accgttatcg attaatgcgt caacagcttc ttgtaacata cgtttttcgt
    14641 tttgtacgat gatgccaggc gcacccaaat ctaataaacg ttttaaacgg ttgttacggt
    14701 tgatgacacg acgatataaa tcatttaagt cacttgtcgc aaaacggcca ccatcaagtt
    14761 gtaccattgg acggatctca ggtggaataa ttggtagtac atctaaaatc atccacgctg
    14821 ggttgttgcc agagttacgg aatgattcca caacttctaa acgtttaatg gcacgtgtta
    14881 aacgttgacc agtcgcagat tctaactcat cacgaagcat tttcaactct tcatctaagt
    14941 tgatttcttc taataagtct ttaatccctt ctgcacccat tttggcagta aattgaccag
    15001 ggaatttgtc atagtaatca cggaattctg cttctgaaag taatgttttc ttctctaaac
    15061 ctgttgggcc tggatcaacc acaacgtatg aagcaaagta aatcacttct tctaatgcac
    15121 gtggtgacat gtctaataag agacccatac ggcttggaat ccctttgaag taccaaatgt
    15181 gagacacagg tgctgctaac tcaatgtgtc ccatacgttc acgacgtact tttgattttg
    15241 taacttcaac accacaacgg tcacaaatca tacctttata gcgtacacgt ttatatttcc
    15301 cacaactaca ttcccagtct tttgttggtc cgaaaattct ttcacagaaa agaccatctt
    15361 tttctggttt taacgtacgg tagttaattg tttctggctt tttgacctca ccatatgacc
    15421 aagaacgaat tttttcaggt gaagcgagtc ctattttcat gtaatggaat ttatttacat
    15481 caatcaagga gcctacctcc tttagtttaa attaactgtg ctagttgatt gatttacaat
    15541 ttatcttaaa aatgttgcag tatcgggcat gcatcgaaac ccaacccctc tcgttggatt
    15601 ccgagcacat tgccgaaacg attaatcgca catcacactt gttgcattca aagtgtgatg
    15661 tttgaataca aacgcaagct tcatcaagcg tttctattcc gcttaatcta tctacaattc
    15721 atcattgttc gttaaattct ttttgtgatt ctggaacact tgacggttgc atgttgactt
    15781 tgcgatctgg aatatcatca tcgtctaagt cacgcatttc aatttcgtta tcttgttcgt
    15841 ccatcacttt aacgtcaaga cctaaacttt gtaattcttt catcaataca cggaatgatt
    15901 ctggaacact tggtcttgag atgttttcac ctttaacgat agcttcgtaa gttttcacac
    15961 ggcctactgt gtcgtctgat ttgtatgtga gaatttcttg taatgtgtat gccgcaccgt
    16021 atgcttcaag tgcccatacc tccatctcac caaatctttg tccaccgaat tgtgctttac
    16081 caccaagcgg ttgttgtgta acaagtgagt aaggtcctgt agaacgtgcg tgaagcttgt
    16141 catcaaccat gtgtgcaagt ttcaacatgt acatcacacc tacagagata cggttgtcga
    16201 atggttcacc tgtacgtcca tcgtaaagaa cagttttacc atcacgtgcc atacctgctt
    16261 cttcaattgt agaccatacg tcatcatcgt tcgcaccatc gaatactggt gatgcaacat
    16321 ggattcctaa gtttttagct gccataccta agtgaagctc taaaacttgt ccgatgttca
    16381 tacgagatgg tacaccgagt gggttcaaca tgatatcgat tggacgaccg tctggtaagt
    16441 acggcatgtc ttcttcagga acaattttag agatgacacc tttgttaccg tgacgaccac
    16501 acattttgtc ccctacatga attttacgtt tttgaacaat gtacacacgt acgagttggt
    16561 tgacacctgg tgaaagtgaa tcatcgcctt cttcacgatt gaacacttta acatcaagta
    16621 caataccgcc agcgccatga ggtacacgta atgatgtatc acgaacttca cgtgcttttt
    16681 caccaaagat ggcatgtaat aaacgttctt cagcagttaa ttccgttaca cctttaggcg
    16741 ttactttacc tactaaaatg tcgccgtctt taacttctgc accaacgtaa acgatacctc
    16801 gatcatctaa gtttttcagt gcattttcag atacgtttgg aatatcacgc gtaatttctt
    16861 caggtccaag tttagtgtca cgtgcttcag attcatactc ttcaatatga atagacgtat
    16921 acacatcgtc tttaactaaa cgttcgctca tgataacggc atcctcgtag ttgtaaccgt
    16981 cccaagtcat gaaaccaacg acaacgttac gacctaatgc catttcacca agttccattg
    17041 aaggaccatc agcaaggatt tcaccttttt ctacaatgtc accttttgca atgattggac
    17101 gttggttata acatgtacca gagtttgaac gtttgaattt cgctaatgga taacgatcta
    17161 acgtaccatc gacttcttga ccgttttctt caactaaacg acgtactaaa atttcgcttg
    17221 attgcacatg ttcaacacga cctcgatatt tagaaatcac agcagcgcct gagtcacgtg
    17281 cagcaacgtg ttccatacct gttcctacaa atggagattc agggtttaac aatggtaccg
    17341 cttgacgttg catgttcgca cccattaacg cacggttaga gtcatcgttt tctaagaatg
    17401 ggatacacgc tgtcgcagca gatacaactt gcttcggtga tacgtccatg tagtccattt
    17461 tttctttagc cattgttgtg ttgttaccac ggaagcgaca cacaatttca tcatcaataa
    17521 agcgaccgtt ttcatcaaga cgtgagttcg cttgtgcgac aacgtaactg tcttcttcat
    17581 cagcagttaa gtagtcgatt tggtcagtga tcgtgtttgt ttcgatatcg actttacgat
    17641 atggtgtttc gataaagcca aattcgttca cacgtgcata acttgataat gagttgatta
    17701 aaccaatgtt tggaccctca ggtgtttcga ttggacacat acgaccatag tgagagtagt
    17761 ggacgtcacg tacttccatt tgtgcacgtt cacgcgtcaa accaccaggt cctaatgctg
    17821 atagacgacg tttgtgtgtc aactcagcaa gtgggttcgc ttggtccatg aattgagata
    17881 attgagagct accaaagaac tctttaattg acgcaattac tgggcgaata ttaattaatt
    17941 gttgcggtgt gatagaatct gtatcttgga ttgacattct ttcacgtacc acacgttcca
    18001 ttcttgataa accgatacgg aattggtttt gtaacaactc acctactgaa cgtagacgac
    18061 ggttaccaag gtggtcgata tcgtctgtgt aaccaatacc atgtaataag ttgaagaagt
    18121 atgacataga tgccacaata tcagccggtg taatacattt tacttctgaa tctgggaatg
    18181 cattaccgat aactgttgtt gtacgttctt catcatcatt tggtacataa actttaatag
    18241 actgaatttc tacaggctca tcaatgatac tatttggaag ctcatagact tgtgcattcg
    18301 cgtttgtttc aagaacgtcc ataatttcat ctaatttacg acgatctaaa acagtgccct
    18361 cttcggcaac aatttcacct gtttctgtat taacgatagg ttcagctaat ttttgattga
    18421 ataggcggtg ttttaaatgt aattttttgt ttgctttata acgtccaacg cttgctaaat
    18481 cataacgttt agggtcaaag aaacgtgaat ataataagct ttttgcgttt tctacagttg
    18541 gtggttcacc cggacgtaaa cgttcataaa tttcaagtaa cgcttgttct gtattttctg
    18601 tgctatcttt ttctaatgta ttacgtaaat attcgttatc cccaattaat tcaatgattt
    18661 cttggtctgt tgaataacct aacgcacgta ataatactgt taatggtaac tttctcgttc
    18721 tgtcgatacg cacataaacg acatcttttg catctgtttc gtattccaac caagcaccac
    18781 ggttaggaat cactgtcgca tcataattca cgcgtccatt tttatctaac ttttcattga
    18841 agtatacaga tggtgaacga actaattgtg atacgataac acgttctgcc ccgttaatca
    18901 caaaagtacc cgtttctgtc atcaatggga aatcacccat aaatacttct tgatctttca
    18961 cttcgcctgt ttctttaatg attaaacgaa ctttcacacg taatggcgcc gcataagtag
    19021 catcacggtt ttttgattct tctaaatcat acttcggttc acctaatcta taatcaacaa
    19081 attctaatga aagattaccc gtgaagtctt caataggaga aatatcacgg aacatttcta
    19141 ataaaccttc ttttaagaac caatcatacg atttcgtttg aatttcaatt aagtttggta
    19201 actctaaaac ttccgaaatt cttgcgtagt ttctacgttt acgatgtctt ccatattgga
    19261 caaattgacc tgccaaacag attcacccct caaaaattgt gcgaacactt ttcagccctc
    19321 atcatgtaac aagacaaaaa gaaaacggta gcacataaaa cgatgacacc attttctatt
    19381 ctataagtct tattttgaaa tgttacaatg aaactttaac cgtaaaagta cacacttatt
    19441 gaacataatt atttcatctt acgactatac cataaacaag cattaaaatc aagatttaac
    19501 gctttttaaa atatgatagc ccttactatt tttaattgat tcgacattgc caaaaacaac
    19561 ttccattttt ttcttcgcgg atggcatgcc ttgtttcttt tgaatcacga cgtacaattc
    19621 accatttgct tcaagaacac gatgcgcatc aacgaaaatt tgatggacca cttgcttccc
    19681 tgcacgaata ggcgggtttg tgacaacata atgctgtgtc tcgttagcaa cctgtgataa
    19741 gccatcactt tcttggattg tcacattcga tagttggttg cgctgtgcat ttttctctgc
    19801 caaacctaat gcacgatgat tgacgtctaa catggtaata tgatcgtgtg gcgcgacttt
    19861 agcgagcatt aatccgatag gtccataacc acaccctaca tccactatcg tcttcttttg
    19921 acctggagga tgtgcattca aaaatgtgtg aacgagcaga tcagagccaa agtcgacttg
    19981 atctcgagaa aaaacgcctg catctgtagt gagatggagt tgatgttgtt gatatgcgta
    20041 tgtaatttct ttttcgtctg ttgctgcatc gggatgtgca tcatagtaat gactcatagg
    20101 cgttgcacct ctttattgtt taatattcaa aaacccgcta ttacgtaata gcgggttttt
    20161 cacttatcaa tgaattattt taattctact gaagcgccaa cttcttctaa ttgagcttta
    20221 agtttttcag cttcttcttt aggcatagct tctttgatga tgcttggcgc accgtcaact
    20281 aattctttag cgtcttttaa gcctaaacca gttgcttctt taactgcttt aacaactttg
    20341 atttttgatg atccagctga agttaattca acgtcgaatt cagttttttc tgctgctgcg
    20401 tctccgcctg ctgcacctgc tactgcaact ggtgctgctg cagttacacc aaattcttct
    20461 tcaattgctt ttactaagtc gtttaattct aaaactgaca tttctttaat tgcttcaatg
    20521 atttgctctt gattagccat gtttattttc ctccaattga ttaatttttt aattgattaa
    20581 ttattctgcg ttctcttctt tgctttctcc aacagcttta accgcataag cgaagttgcg
    20641 cattggtgct tgtaatacag aaagaagcat agatacaaga ccttcgtgtg atggtaatga
    20701 accaacagtt ttcacttcgt cagcagtgat gacactacct tccatgatac ctgatttgat
    20761 ttctaaagct tcgtgttctt tagcgaatcc agcgataact ttagctggtg caaccacatc
    20821 ttcagttgtg aatgcgactg ctgtaggacc agttaagaac tcgtctaagc cttcaatacc
    20881 agctttttca gctgcacgac gtaacattgt gtttttgtac actttgtact gaacatttgc
    20941 ttcacgtaat tgcttacgta attctgttac ttctgctact gttaaaccac ggtagtcaac
    21001 aactactgta gaaacagaac ctttaagttg atcagcaatc acatcaactt gttgtttttt
    21061 cgcttcaatg attccagaca ttttgacacc tccatagata agttttgggt gcttttataa
    21121 ttaagtggac acttaaatta aaaaaacact ttttacccac ggcaaaaagt gcttgaatgc
    21181 gttaacgttc aagtccattt tagcctcggt aggatgttgt tttaagttct ttatgaactc
    21241 ctactgtctt aggtaaaata ttcaacagaa tttaatataa aggttttcgc gtcattcgtc
    21301 aacctttttt atattttatg atgcacttaa tgattaaact aagtgtcaat cattaagtgc
    21361 gcattgaatt atagtttgaa agttgcagta tctactttga taccaggacc cattgtagtt
    21421 gtcactgcaa cagatttgaa gtaagtacct ttagctgaag atggttttgc ttttgttaac
    21481 acatcttgta aagttttgaa gttttcaact aatttttcag tttcaaatga aactttaccg
    21541 atagaagcgt gaacgatacc tgctttttca gcacggtatt caactttacc agctttgatt
    21601 tcttcaacag cttttttaac gtccattgtt actgtaccag ttttagggtt tggcattaaa
    21661 cctttaggtc ctaatacacg acctaattta ccaacttcac ccatcatgtc tggtgttgca
    21721 acaacaacat caaagtcgaa ccaaccttgt tggattttgt ttacgtattc agcatcgcct
    21781 acatagtcag cacctgctgc ttctgcttca gcaattttat cacctttagc gaatactaat
    21841 acacgttgtg atttaccagt tccgtgtggt aatactactg caccacggat ttgttgatcg
    21901 tttttacgtg tatcgatacc taaacggaat gcaacttcta ctgatgcatc gaagttagcg
    21961 atagacgttt cttgagctaa acgaattgct tcttctacag tgtaaagtgc ttggcgatca
    22021 actttattta aagcttcttg atacttttta ccttttttag ccattttttg tcctccttta
    22081 gtggttttat cggaatgtcc tcccacgtta acttgcctta atagcaagtt gagcgcagat
    22141 agccctttgc gtcaatacgc acagaatgat gaaatatgtc attaatcata ggcctacctg
    22201 cgttcgtttt cgaaaattta tcgtatcatt ttgttaattg tcaatatgtt gatcattact
    22261 caacaacaat acccatacta cgtgcagtac cttcaacgat acgcatagct gcttcttcgt
    22321 cagcagcgtt taagtcaggc attttagtgt tagcaatttc acgtacttga tctttagtta
    22381 cagttgcaac tttgtttttg tttggttcac cagaaccttt ttcaatacct gctgcttttt
    22441 taagtaaaac tgctgcaggt ggtgtttttg taatgaatgt aaatgaacgg tcttcatata
    22501 cataaatttc aactggaata attaaaccca cttgttcttg tgtacgtgcg ttaaattcct
    22561 ttgtgaaagc cataatgttc acaccggctt gacctaatgc aggaccaact ggtggtgctg
    22621 ggtttgcttt acctgctgga atttgtaact taactacttt ttctactttt ttagccacga
    22681 tgtgcacctc cttgatatcg tgatgtggtc acagggctca tttttgccct cccactctta
    22741 acatttcgtg acgaaatgta gcgctatgaa tgcgcgacct cgttattata acatttgcgt
    22801 taacttaata caacacattt tttgtaacat attatactac aattaaagtt tttcgatttg
    22861 atcgaattca acttctacag gcgtctctct tccgaacatg tctacgagaa ccgtcaattt
    22921 aaacttgtcc gcttcaattt cgtgtatttc accgacttga cttgcgaacg gtccagaagt
    22981 aatgcgcact tgttcaccta actcaacttc aacatcgata gatttttcgt tcattcccat
    23041 ttgtttcagg atgaaacgga cttcatctgg taacaatgga ttcggttttg accctgcacc
    23101 tgctgatcct acgaaacctg tcacaccagg tgtatttcta acgacgtacc aagattcgtc
    23161 agtcatcaca agttcaacta aaacataacc cggaaatgtt ttcttcattt gttttttcgc
    23221 tttaccatct ttaacttgtg tttcttcctc ttctggaatg acgactctaa agatttgctc
    23281 tgtcatattc attgattcga cacgtttttc taaattcttt ttaactttgt tttcgtaacc
    23341 agagtaggta tgtactgcat accaacgttt tgcacctagc tcttcagaca tgctgacaac
    23401 tcctcgttcc tattttatca tttcaattaa ctgaccaatt ccgatatcta aaccccagaa
    23461 aaacaacaag aagaacaata cggtcataac tacaattgtt gtatacttaa caagctcggg
    23521 ccctgttggc caacttgttt tttccatttc ggatttaacg ccttggaaga aactttcttt
    23581 tttcggcata attaattccc ctccaattat ttggattctt tatgaagtgt atgcgtatta
    23641 catttcacac aaaacttttt cagtattaat cgctccgtca cgttcggtga tttcggtacg
    23701 tgatagtttc ggttgccaca tttctcacaa tttaacggca cttttttcaa catttctcac
    23761 cttgcttcta taataccagt ttactataca taagtttaca ttcaattgtc aaaccacttt
    23821 cttatgtgag gagacttttc aatttttgac gaattcgata cagcgcatta taaactttct
    23881 tatctgaaac attcagttca cgtgcaattt ctgcaggtcg ccattctgca ataaggtaat
    23941 ctagcacgcg catttcaaat gcactcaact gttgaagtgt ctgttgtaac gtgtcttgaa
    24001 tataatgaag atattcgtga ctatggcgtt gctgctcggc caactgtgtt cgataactga
    24061 ttgcatagcc atcgacgtaa tcttcaaaaa tgcgctgatg ggtcagtttt ttgcgtcgat
    24121 agtcaagttt acgccgataa atggtccgct taatgtaatg ttcgaatgga acaccaaaat
    24181 aaaactgctc gctttgtatt ttttgataaa ttgcgagaac aacgtcttgt actaaatcat
    24241 cacaatctgc ttgggctaca ctaaaatcac caaaactttt tcgcgcgata cgctcaatat
    24301 ggtgaaccaa cttttcaatt gcttcgggtt gttgctgttg cgcacgttgt atggtttctg
    24361 aaacaatatc gtttggatta gggatttgtg ccatgaaact tttcctcacc ttcgaccaat
    24421 gatgtcttat catatctgtc aaaggtgtct ctctacaact tgcaaaacga ttaatctcga
    24481 gacttgcccc gtcttatttt ttcaaattca gataacaact cttctgatag ctgaatacgt
    24541 gtacgcggct tcatttcacc aaattcgtcc atcgatttgg tcacactctc tttgttctct
    24601 tttaaatggc gccacatttc tcttgaggat aaacgataag cacctgttcc aaaaatggca
    24661 tgttgttcac tcatatcact cgtcaccacc gtaatatggg tcgtatgctt attataaata
    24721 ttatagacat agcgttcgat aaaactatct gctgtttcgt gctcttttgt aaatacgaca
    24781 tgcaccccgt gatactcata ttcagactgt ggtgtgccac gatcataagc atcaaacaca
    24841 cacacaattt taccttttgt cactgcacta tagttggaaa tttcgatgag caattgttct
    24901 ctcgcttctt ctaaactttc tttagcgaca cgactcaatt tttgggactg accaatcatg
    24961 ttataaccat ctatgattac gtaatagtcc ttcatcattt acttgtcacc gccgataggt
    25021 tgacgtttac gaaacacttc atacatcatc aaactcgctg cgaccgatgc atttaaactg
    25081 ttcacatggc caaccattgg aattttaatg taaaagtcac atttctcttt cacacgacga
    25141 ctcatccctt gaccttcact gccgatgaca atcgctaaag gcatatcggc ttgcatttga
    25201 cgataatctg tcgcattgct cgcttctgca cctgcaatcc aatacccttt gtctttcaac
    25261 acatccatcg tttgcgacaa gtttgtcaca cgaatcacag gcacatgctg aattgcacct
    25321 gttgacgctt tcgctactgt ttgcgtcaag ctaaccgaac gacgtttagg aataataatc
    25381 ccatccacac ctgtcgcatc agccgttcgt aaaatagaac ctaagttgtg tggatcttct
    25441 aacccatcta aaatcaacac ggtggacaag ccttcttttt gcgcttgttc tgctaaaaat
    25501 tgattcaagt ctgcatattc atatggtgca acgaatgccg caacaccttg atggggtgca
    25561 ttcgcaagtt gatctaattt tgattttggg accgtttgga caacgagttt tgatgatttc
    25621 gcaactttta aaatttcttc aatttgttgc ttcttaatcc cttcttgaat taagatttta
    25681 ttaatcgtat gtcctgatat gactgcttct ctcactgcat gacgccccac aataatttcc
    25741 aagtccatgg atttcaacgc ctttcttcaa cattttcaac aatcactttt aacaatgctt
    25801 ctaatcgttc ttcttgatgc tctaaatata aaaagccaat gatcgcttct aaaccagaac
    25861 tttttcgata ggtctggaca tctgtgttct tcgctttcgt ataacttttc gcatttcgtc
    25921 cacgcttcac aaccgcaagt tcctcttcat tgaaccaatc ttgcgcgatt aaatgttcta
    25981 gcgtcactgc ctggctttta gctgatacaa atcgtttagc ctcttgatgc agacgattcg
    26041 gtttactttg aagctttaaa ataatatacg tacggacata ttgatcaagc accgcatccc
    26101 cgacataagc gagcgacagt gggttgagta gtttggcatt tgtcggctta tccacgttta
    26161 tatctcacac cttgtggcgt atcttctaaa atgatgtttt gggctttcaa ttgatcacgt
    26221 atttcgtcag cacgtgcata atcttttgct tgacgtgcag cgttacgttc ttcaatcagc
    26281 cgttcaatct cttcgtcgag taacccttct acatggtttg aagttaacgg cacacctagc
    26341 acatcactaa agatcgcgaa cacttcttta aaacgttgaa tcacttgtgt tgaagtattg
    26401 tcttctaata aatatttatt cgcgagcttc actaaatcgt accaagctgt aatcgcattt
    26461 gctgtgttga agtcatcgtc catcactgtc tcaaactgcg tcaaaatcgc atcaatttgt
    26521 gttaacatcg ttgcgtcatt tgttaagtcc gtcgccacag tttcacgttc cgtcaatgct
    26581 tgataactat tgcgaatacg ttccaaacca cttctcgctg cttcaacaag ttctaaattg
    26641 tagttgattg gacttcgata atgaacacta atcatgaaaa agcgtaatac atctgggtcc
    26701 acttctttaa taatgtcatg gactaaaatg aagtttccta aagacttact cattttttca
    26761 ttatcaatat taataaaacc gttgtgcatc cagtagttcg caaacgtctc atggttatgc
    26821 gcttctgact gtgcaatctc gttttcgtga tgtgggaatt gcaaatcgct tcccccagca
    26881 tgaatatcaa tcgtagggcc gagcttttca aaggccatta ctgaacattc aatatgccac
    26941 cccggacggc cttcaccgaa tggactctcc caactaattt cacctggttt cgcttttttc
    27001 catagtgtga agtcgagtgc atcttctttg ttttcgcctt gctcgatacg tgcaccgact
    27061 ttcaaatcat caatcgactg atggctcaac ttaccataat cttcaaattg acgcgttctg
    27121 aaataaacgt cgccaccact ttcatatgca taaccttcat caactaactt tttaataaat
    27181 ttaataatgt catccatatg atccatcacg cgcggattcg acgtcgcttt tttaacattc
    27241 agggcctctg tatcttcata aaaggcttga atgtaacgtt ccgcaatctc tggaactgtt
    27301 tcgcccaact cttgtgaacg tttaatcaat ttatcatcaa cgtcagtaaa gtttgagacg
    27361 taattcactt cataaccttt atattcaaaa taacgacgga ccacgtcata gttaatcgct
    27421 ggacgtgcgt tcccaatatg gatgtaattg tacacagttg ggccacacac atacattttc
    27481 acttttcctg gttcgatagg ctgaaacact tctttttgac gtgttaatgt attatataat
    27541 gtaatcatct ttaatctctc catttttagt ttgttcaagt tgtcgttcta gttgtttgag
    27601 ttgctcataa attggatctg gcaagttaag atgatcgaat gtcttaccga tacgtctacc
    27661 atcttgcttc acaatacgtc ctggaatacc taccaccgta gaataacttg gaacatcttg
    27721 aagcacgacc gaattagcac cgatattaac atttgaatgc accttaatat tacctaacac
    27781 tttagaacct gctgcgataa ggacgttatc accaatgtcg ggatgacgct tccctttttc
    27841 tttaccagtt ccacctaacg tcacaccttg atatatcgtc acattgtcac caatagtaca
    27901 tgtttcgccg atgaccaccc ccataccatg gtcaataaat aaacggcgcc caattttagc
    27961 acctggatga atttcaatac ctgtaaaaaa tcgtgaagct tgagaaatcg ctcttgcaag
    28021 tacataacgt ttcttttgat ataagcggtg tgcaatcaaa tgactccaaa ccgcatgtaa
    28081 acccgcataa gttgtaatca cttctatcgt tgagcgtgct gctggatctt gttcaaatac
    28141 cattttgaca tcatccatca tacgtcggaa cactttaacc cctccttcaa acagcatgac
    28201 aatacttatt cttgtaaact aactgaaaaa cgactttcac ggacaaccca ctccttggct
    28261 tcattgtcct ccttaaaaag tgtgatcaga attgaaaaaa acacctctaa catgtcatat
    28321 gtcagaggtg cgatatgtgc acggttccac tcttaattag tacatgttca aagcttaaac
    28381 tttgcatcca tatactcact caattggtta ttcaactctc atcctaaagg tgcattcaac
    28441 aaactttgtg gtgcactctc accaaccgta cactctctga ttcacacgct gtttgcttac
    28501 ttgtccttta ttctattcaa atccacttta atagtagtcg attttcaaag tgatatcaag
    28561 tacgaaaatc gaacataccc ttttttataa taaactttga atacgacgaa gcactttatc
    28621 ttgtcctaat acttccattg tgttcggtaa ttcaggtcca tgcatttggc ctgttactgc
    28681 aacacggatt ggcataaata attgctttcc tttaatgcct gtttcttttt ggacttcttt
    28741 gatgattttt ttaatctcag ccgcttcaaa gttttctaaa gcttctaact taccgtataa
    28801 tgctgtcatc aattgtggca cttgttcacc gttcaatact tcttgcgatg cttcgtccaa
    28861 ctctttttca tcgcggaaga acaactcaga taacggtaca atttcacccg catagctcat
    28921 ttgttcttga taaagcgcaa ctaacttgcg accccaatct aactccgctt ctgatggtga
    28981 ctctggtaat aagcctgctt tgatcatatg cggcaatgtc atttcaaata ctgtttccgc
    29041 atctttttct ttcatatatt ggttgttaat ccactctaat ttttgtttat cgaaaaatgc
    29101 tggtgatttt gataaacgct tttcagtgaa gattttgatg aattcgtctt tagagaaaat
    29161 ctcttcttca ccttctggag accaccctaa caatgcgata aagttaaata acgcttctgg
    29221 taaatagcct aaatcgcgat attgctcaat aaattgtaaa atttgaccgt cacgtttact
    29281 taatttttta cgttgttcat taacgattaa agtcatatgc gcaaagcgtg gtggttccca
    29341 accaaatgtt tcgtaaatca ttaattgttt aggtgtgtta gaaatgtggt cgtcaccacg
    29401 aatgacgtca gaaatttcca tgtagtgatc gtccacggct actgcaaagt tatatgttgg
    29461 tacaccgtct tttttcacga tgacccagtc gccgaagttg tcagattcaa atgtgacagg
    29521 ccctttcacc atatcatcaa acgtatatgt tttattttgc ggcacacgga aacggattgc
    29581 tggcttgcgt ccttctgctt caaactgctg acgttcttct tcagtcaagt gtgcatgttt
    29641 cccaccgtaa cgcggcattt caccacgtgc gatttgttct tgacgttctg cctctaattc
    29701 ttcttcagtc atataacatt tatacgcttt atcttctgct aataactgct cgactaaagg
    29761 ttggtaaatt tcaccacgtt ctgattggcg ataaggtcca tagcctttat ctttgtctac
    29821 agattcgtcc caatccaaac ctagccactt caaattatcg aactgtgatg attcaccgtc
    29881 cgctaagtta cgtttagaat ctgtatcttc aatacgaatg acaaaatcac catcgtaatg
    29941 tttcgcgaat aaatagttaa ataatgccgt acgtgcgttc ccaatatgca aatagcctgt
    30001 tggacttggt gcatatctta ctctcactcg gttactcatt tcgttcactc ctgtttcatt
    30061 gttcaattgt tatattatag catgtcatcc ccatttatgc atatcacagc ttaggttaag
    30121 ttgttgccgt taatgacaca atcgcttgag cggcaatccc ttcttgacgc cctgtaaaac
    30181 ctaacttttc gctcgtcgtc gctttcacat tcacacgctt aatatcgaca gcaaaaagac
    30241 ctgcaatgat tgcgcgcatc tcatcgatat aaggtcggaa tttcggtttt tccgcaataa
    30301 tcgttgcatc aatattatta atgacataac cttctttttg aacttctgcg tacgcttctg
    30361 ttaataattt tttcgaatct gcatctttaa attgtggatc cgtatctgga aatagcttac
    30421 ctatatcacc taatgcacat gcccctaaca tcgcatctgt aatcgcatgt aacaagacat
    30481 ctgcatcact atgccctttc aaaccatgcg tatgtggcac ttcaatcccg ccaataatta
    30541 aagggcgtgt cgcatcaaat gcgtgcacat cgtatcctaa tccaactcta aacatgatga
    30601 tgtcgactcc ttttttctaa aattgcttct gcatatgtta aatcttcttc agtcgttaat
    30661 ttaatattat cataatcccc ttcaaccata taaatgcgtt gaccgtaagc ttcaattaac
    30721 gaggcgtcgt ccgtccccat catttgttgc gtttttgcat ggtcataggc tgaagcaagc
    30781 agttcaaatg tcgcaccttg aggcgtctgc acttgccata aagtcgcacg atccaatgtt
    30841 tccgtcacaa attggtcgga cacgcgttta atcgtatctt ttgccttcac accgacaatc
    30901 gccgccccat atgttcgaat ggcagccgtt acctcatgaa tcgtgtcatg cgtgacaaac
    30961 gggcgtgccc catcatgcac aaggacaatg tcatcattcg tgaactcaac gttttgcagc
    31021 acttgatgaa tactatcttg acgtgtctca ccgccaacga ctaaactttt tacttttgaa
    31081 aatggtcctg ttaatacctc aagttgatcc cgatctctct cgtgtatcgc caaatgaatg
    31141 ccttcacact gtacatcgga ttgaaaaacg gaaagcgtat gctctaacac acggcgcccc
    31201 gcaacttcaa tgaacagttt attatacgga cgtcccatac gactgccttt gcctgctgct
    31261 ggtataatga cgtgataatt tgacatttat gcttccacct tcttcgcaaa aataattcgc
    31321 cctgatgcag tttgtaacat actgattact tcaagtgtaa tggtttcatt cacgtattgc
    31381 tttgcatcat ccacgaccac cattgtgccg tcatctaaat aaccgacacc ttggccaggc
    31441 tctttcccaa cttttgtaat catcaagtca aaacgatcgc cttgatgcac ctcaggtcga
    31501 atcgcatcag ataggtcatt gacatttaac actttgattc cttggatgct gcatactttg
    31561 ttcaagttat aatccgttgt aatcacgtgc gcgcgataat gttgcgctaa ccttacaatt
    31621 aagtcgtcaa tgtcttggtg tgtacgttgc gggtgaataa tacgtgtcgg gtgtttcgac
    31681 agatgaatcg cacttaaaat ttctaaacca cggcgccctt tatcacgctt aatactatca
    31741 ttcgcatccg cgacgacttg caactcatta atgacacctt gaggaatgag aatttcgcca
    31801 tcaataaatc ccgcttccat aatttttaaa atacggccat caataatcgc actcgtatca
    31861 ataattttcg gcacagcatt gcgggcatta atcgccatcg aacgcgccat attttctggt
    31921 aaaaacaaca gcatttcatc acgttttttt agaccaaatt gaaaaccgag ataacttaaa
    31981 cttaatgtaa gtaggatagg gacgatacgg ttaatcaaat ccgttccaat aaactcaaga
    32041 ataaaggaaa tcatgacaga tatgagtagc cccataaaca aaccaatcgt tgcgaagata
    32101 atttcaatag cactataccc caacacaaat tgctctaaat ctttcatcgc atacgcaata
    32161 cgggggataa accaaccaaa caataaaaac atgatagcaa cacccatgat cgacgtcaca
    32221 taactattct ccatcattgg aggatgactg acattaaaat caatcatgac agcagggatt
    32281 aagagtatgc ctaacacact accaataata atataagaca caatcactaa taatttaata
    32341 aaatccacct ctatcatccc tcctttctaa ttttttaatg cgtatttcaa tgcttcattg
    32401 acagaagtca cgccaatcac ttcaatacct tctgggaagt gccatccgcc aatattgttt
    32461 ttagggataa tcacacgttt aaagcccaat tttgctgctt cttgcacacg ttgctcaatg
    32521 cgcgaaacac ggcggacctc accagtcaat ccaacctcgc caatataaca atcgaggccg
    32581 tctactgctt ggtctttaaa actagaagct gtcgcaatga cgatacctaa gtcgacagca
    32641 ggttcagaga gtttgacgcc ccctgccacc ttaatgtaag catcttgttg ttgtaataaa
    32701 taaccttctt ttttctctaa caccgccatt aacaaactga ggcgattatg gtcaatacct
    32761 gtcgccatac gtctcggatt attgaacgtc gtcggtgtga caagcgcttg tacttcaatt
    32821 aacaatggtc gtgtcccttc catcgttgcg acaattgtcg aacctgcaac attggtcgtc
    32881 cgttcttcta aaaacatttc tgacgggtta agcacgcttt ttaaacctga ctgtttcatt
    32941 tcaaaaatac ccatttcatt cgtagagcca aaacggtttt tcaccgctct taaaatacga
    33001 tacgcatgat gttcatcacc ttcaaaataa agcaccgtat ccaccatatg ttcaagtaaa
    33061 cgcggccccg cgatttggcc ttctttcgtc acatggccta caataaacgt cgcaacattc
    33121 atttgtttag cgatgtgcat caagctttgt gtactttcac gaacttgaga tacagagcca
    33181 ggcgccgaac tgatttcggg atggtagatc gtctgaatag agtccactac aattaaatca
    33241 ggttcgacct ttttcaccgc ttcatgaata accattaagt ccgtttccgc aaacacgttg
    33301 agttgactcg catcttcatc caaacgatcc gctctaattt tagtttgatt gagtgattcc
    33361 tcaccagtaa tatagagcac ccttttctct ttagataaag ccgcgcacat ttgaagtaac
    33421 aatgtggact tccctattcc tggatcgcca ccaatcagca cgagtgaccc ttctacaata
    33481 ccgccaccga gcacacggtt taattcacca ctattcgttt ggatacgtgg cgcaagctct
    33541 tgtttaatgt catcgagctt ttgtattttt gctgaacttg ttttttgcgc ccgtacaccg
    33601 tgtttaggac tcgcagtttt ttgttcaaaa gattcctcca ttgaattcca agcaccacaa
    33661 tttggacatt tccccatcca tttaggcgat tgataaccac aggccgtaca ttcaaaaatt
    33721 gttttcgttt ttgccactca gacacctcca tctcgtcata taacatatct attttatact
    33781 tgaaaaatgt ttctgacaaa tgttgccctt tatcatttaa acgcttcaaa tatccgttct
    33841 catcgaaaca cactatccaa ttataaataa tatacagcaa atacttaaaa atgtagcctg
    33901 tacaacacaa aacaggaaat agaaagctca aataaccagc tctatcatca gtaaaataaa
    33961 ctacaacgca cttgacgcac taaagacaaa gacaaaagac gattacaact gacatagcaa
    34021 aggctatacc ccatttgtaa ccgtcccttt tttgtttcta ttttaaatac agcgtaggtc
    34081 cattgcagtc aatcgcatga cttgtgccat tgaataaaat agtttattta tttttgccat
    34141 tcaccttcga tagcactaaa aagatgatga agaaaagtat cgcataacct attaaatata
    34201 aaacgtcctc aatatggata cacccttcac ttaaaatgct ccatccaata tgcccgtatc
    34261 gatatgaagg taatatctca gcaaaagctt gcatatgttt cggcatcgca tcgacaggaa
    34321 tccatagccc ccctaaaaaa gacaaaagca aataaacaat ggtacctatc ggctgcgcgg
    34381 ctgaaccgag ttggccaatg attaaagcta aaaataaaaa tgcaaaactg aaaacattca
    34441 acaatatcac gatttctacc agtttataga aggcgatatg aatgtcatta taaaaataac
    34501 ctaacaaaat cattgcgacg gaaaagatga aagatataag aaagtatgag aataagtaac
    34561 tcatcatata ggcattcgga ttaatgacag acactttaag atatgcatac cagttatcat
    34621 ttttttcatt tgctaccttt gttccaagta aattaatcgc gtttcccatt ataccaaagc
    34681 agatcagaga aatgagtgag tattccttcc aactgatacc attgactgct gcattttgtg
    34741 gaaaaatctc agaatatata acatagaaaa acattggcaa tgcgataatt aataaaacat
    34801 acttaaaatc cctaaatatt cttcgcgtat tgagttgagt taagtataga aatgatttag
    34861 cctttttcat ataaaacttt ctccttaaaa attttcttca acttgtcacc tttatggtca
    34921 aaggtattga ataaaacttc tacctgctca ttcaacacta ttttaccttt atggagaatc
    34981 acgattcttg tagcgaaggc ggctatttct tctaaatcgt gactaatcaa caacacactc
    35041 atcttttctt cttcgacttt cgagcgaacg tgttcccaaa ataactcttt agaagcaacg
    35101 tccatgcctg tcgttggttc atcaagcact aaaaactgag ggcaattcac tagagctgct
    35161 gcatattgta gtcttctttt ttgtccccct gataagcgcg tgcaatattg atttttttcc
    35221 ttcactaaat cgacttcttt taatatgtca tctgtatctt gttgatgctc tgagtaactt
    35281 tttaaaagct ctaaccattc tttcactttc attttttcag gcattgccac ttcttgtaac
    35341 acaacaccac attgttgttt gaaatcgata ttttttatca ccttacctga attttgtttg
    35401 agtagaccta gcactatttt aatcagtgtg gattttccct ggccattcaa ccctaaaaga
    35461 cctacaattt caccttgatt gaccgacaag tcaacagcat ccagcacttt gtttttacca
    35521 aaagttttac tcacatcatt aatttcaaat atattgccca tattattcaa actccttaac
    35581 ggattatctt ttgaatcatt tgttgcgtaa tccgaatagc ttcttcatta actggaggga
    35641 tagaattcat taaaaattta ggggaaagat aaatcactga aagattttct ttatacgtat
    35701 aagcctgttc tccgttattg atatctattg attcatgaat atcgtatgca tctaacattt
    35761 tttcaatgtc taaattaaaa tcccgtttca cgtcttctgt aaaggaaata agtagaaaca
    35821 attcaa
//
LOCUS       DANHOL010000005        35316 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.005, whole genome shotgun sequence.
ACCESSION   DANHOL010000005 DANHOL010000000
VERSION     DANHOL010000005.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 35316)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 35316)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..35316
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.005"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            98..3547
                     /locus_tag="PTC08_000146"
     CDS             98..3547
                     /locus_tag="PTC08_000146"
                     /EC_number="6.4.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate carboxylase"
                     /protein_id="HDK5681684.1"
                     /translation="MKRIHKLLVANRGEIAIRIFRAATELNIKTVAIYSKEDMGSLHR
                     YKADESYLVGENLGPAESYLNIEQIIKVAKEANVDAIHPGYGFLSENMQFAQRCAEEG
                     IVFIGPHVEHLDMFGDKVKARATAIKADLPVIPGTDGPVAGFEEAQTFAEKAGFPLMI
                     KATSGGGGKGMRIVREPSELQEAFTRAKSEAEKSFGNSEVYIEKFIDQPKHIEVQVMG
                     DEAGNIIHLYERDCSVQRRHQKVVEVAPSVSLPDNLREQICEAAVDLMRQIQYVNAGT
                     VEFLVSGNEFYFIEVNPRVQVEHTITEMITGVDIVKTQILIADGQLLHDDAIAMPQQS
                     DIRTLGYAIQCRITTEDPTQDFMPDTGRIVAYRSSGGFGVRLDAGDAFQGAEISPYYD
                     SLLVKVSTHAISYKEAREKMARSLQEMRIRGVKTNIPFLRNVIQHAKFASGDYTTKFL
                     EEAPELFTIKTSRDRGTKTLEYIGNVTINGFPSVEKRPKPHFEKPHIPTTDTKAIASL
                     SGTKQLLDAKGPDAVTAWVKAQEDVLLTDTTFRDAHQSLLATRVRTHDLLKIAPETAQ
                     VMKDNFSLELWGGATFDVAYNFLKENPWERLEKLRKAIPNVLFQMLLRASNAVGYRNY
                     PDNVIQKFIAESADAGIDVFRIFDSLNWLEQMKVANEAVQKAGKISEGTICYTGDILN
                     PERSNIYTLDYYVKLAKELEREGFHMLAIKDMAGLLKPRAAYELIGELKAAVDLPIHL
                     HTHDTSGNGILTYKEAIEAGVDVIDTAVAAMSGLTSQPSSNSLYYAMSGFERNIRMDI
                     EGHETLSHYWDAVRPYYSDFESDMKSPHTEIYQHEMPGGQYSNLRQQAKSLGLGERFS
                     EVKDMYRRVNFLFGDIVKVTPSSKVVGDMALYMVQNELDETSVIEQGHKLDFPESVVS
                     FFRGDIGQPVNGFNETLQRVILKGQQPLTARPGEYLAPIDFEALREELQEKQQAQVTE
                     QDLISYALYPKVYEQYMQTYEMFGNVSKLDTPTFFFGMRNNEKIQIEIDKGKILIVEL
                     KTITEPDENGVRTVFFDMNGQARRIQVKDENIQTSHLAKMKADKSNPNHIGAQMPGTI
                     IEVNVAEGDQVEAGQSLIISEAMKMETTVQAPFKGTISKIYVAANDSVETQDLLIEIE
                     PEV"
     gene            complement(3685..4599)
                     /locus_tag="PTC08_000147"
     CDS             complement(3685..4599)
                     /locus_tag="PTC08_000147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme A synthase"
                     /protein_id="HDK5681685.1"
                     /translation="MFKKRNLKWLAVVTTLIMTWVQLGGALVTKTGSEDGCGSDWPLC
                     HGALLPQNLPIETIIELSHRAVSGLSVIFVTWLVITSWKNIGHIKEVKPLGVISIGFL
                     LVQALIGAAAVMWQQNDYVLALHFGISLISFSSVFVLTLIIFDMDKKYEANKVHIRKP
                     LQRYTWLMTIVVYLTIYTGALVRHTDSSLAYGAWPLPFNDIVPHDVHDWVQLTHRLMA
                     MVAFFIIMFTYIHAVKHYPTMRTIHYGYTVSFILIILQVLTGALSIVTNVNLIIALLH
                     ALFITLLFGMISYFILLILRTNRGDQQA"
     gene            4811..5722
                     /locus_tag="PTC08_000148"
     CDS             4811..5722
                     /locus_tag="PTC08_000148"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protoheme IX farnesyltransferase"
                     /protein_id="HDK5681686.1"
                     /translation="MSKSEVVSQTSGRITYKELKQIIKLGLVQGNLIPSFAGAWLAIV
                     MTHHAFLAAIPQIIVMIIGSTLVMGGACALNNFYDQDIDRLMPSKQNRPTVNNRISDR
                     HLLLLSFGMMVVGEILLFMLNMQAGVIGLVGIVGYVSFYSIWSKRHTTWNTVIGSVPG
                     AVPPLIGWVAIEGHLSLMAWALFLVVFCWQPIHFYALAIKRKDEYATARIPMLPSVKG
                     FSRTRVGMFLWLIALLPLPFLMQDLGVVFVVLATLLNVGWIALGLTSFKSSANETKWA
                     TKMFIYSLNYLVLFFALVVVISLIQLI"
     gene            5750..6211
                     /locus_tag="PTC08_000149"
     CDS             5750..6211
                     /locus_tag="PTC08_000149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002457433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF420 domain-containing protein"
                     /protein_id="HDK5681687.1"
                     /translation="MNVPILPTLSTTCIVISAILVAIGWRLIWKRQIERHKKTMLWAA
                     IFAVVFFTIYASRTIFIGNTAFGGPDSVKVYYTIFLVFHITLATVGAVLGLIQIFTGL
                     KDRYSVHRKIGPVASVIWFFTAITGVAVYILLYVLYPGGETTSLIKATFGL"
     gene            6854..7924
                     /locus_tag="PTC08_000150"
     CDS             6854..7924
                     /locus_tag="PTC08_000150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCP-like extracellular protein"
                     /protein_id="HDK5681688.1"
                     /translation="MRRKLIKVLAVLLLVGFLVYLFYSPQLEFDVLENPNRANHQQPE
                     KPKNVNQNEGQNPPLESGVGTYIGKSLNQITSQFGTPDRIYSFQQGYRKYIYKGDKRY
                     IIFAVKDDKVKSVYVTGKNTEKLTGPIKINEQASDLFDKFSINTEPQFKVNGQTYHYE
                     LSDKDVKTQALIQFDDTFAQVFIDQQKNKVLGLRYLDKEALADMNPYAQNNEETTSQE
                     TEASEEEGARPADQNVNERLTLYELTNEMRQLNERQPLKVNDTLENVATVDLFNYGNQ
                     KNTEFTEENLINLMKQTPLNYQSVSQNVGYNFNDVPTLVHSWINSDVHRSRMLNAKYV
                     EMGGEVQYQYYMLIFLEKGENA"
     gene            7926..8366
                     /locus_tag="PTC08_000151"
     CDS             7926..8366
                     /locus_tag="PTC08_000151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlbF family regulator"
                     /protein_id="HDK5681689.1"
                     /translation="MYDEPLMQVLDQTDDLADQIRQSDLFITYQKAKQALVEDREAQR
                     LYGQFLKSKINYDEVQRFGRYHPDYQEVMLTTRRLKREYEMHDTVVAFKQSETALQQL
                     LDEIVTMIATSVSEHVKIDAGTPLFEALTTGGGCATGATCQCRV"
     gene            complement(8431..9363)
                     /locus_tag="PTC08_000152"
     CDS             complement(8431..9363)
                     /locus_tag="PTC08_000152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphodiester phosphodiesterase"
                     /protein_id="HDK5681690.1"
                     /translation="MTRKSQILKGMLFGAVSMVTGAVLLQKTTKTPTLRTIPSFFSGQ
                     APYLFSHRGGMGERPESTALAFDYSVQMQLTGFETDIRISKDEQVIVFHDAEVDRTTN
                     GSGPVSAHTLDALKALDAGYHFKDINGDRPYQNHPDAKILTMGELLSRYPEQLVNIDI
                     KDHPDSYEGQIAAQRLYDVIVQHEAKSRVLVTSFYREQIERFHKISQGTVAIGASQAE
                     VTEGILKLYSGLKHFYHGKAQTFQMPTHFHGIPLVQPKLIQWLNNTNRMPGYYDVNSV
                     DLMHHLLSLGVHTIVTDRPSLGRQFLTAYRQQQP"
     gene            9457..9702
                     /locus_tag="PTC08_000153"
     CDS             9457..9702
                     /locus_tag="PTC08_000153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020444660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlbG family protein"
                     /protein_id="HDK5681691.1"
                     /translation="MDIIQRENIIIYLKNMKHERHIRKYGHIVYTNSQQKYVSMYVNQ
                     KDIDDVVTRLMKLKYVIRVVGSPYKDLKQEYPKEANE"
     gene            complement(9705..10094)
                     /locus_tag="PTC08_000154"
     CDS             complement(9705..10094)
                     /locus_tag="PTC08_000154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002457429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5681692.1"
                     /translation="MQQSFIVLGHGLTDLYEFKTLIEYNHERIDRIVFFHTPKSTHQL
                     TSVAIIMQPTEGRKFQAMYIMLDALRYPYPESNRKYELIQSYAAPYHIEMVGVDVHAP
                     DDYPELDLYFNYLKSVLRLQHWIPALE"
     gene            10157..10708
                     /gene="rsmD"
                     /locus_tag="PTC08_000155"
     CDS             10157..10708
                     /gene="rsmD"
                     /locus_tag="PTC08_000155"
                     /EC_number="2.1.1.171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(966)-N(2))-methyltransferase
                     RsmD"
                     /protein_id="HDK5681693.1"
                     /translation="MRVIAGKHKSKSLETLEGRNTRPTMDKVKEGIFNSLHTVEGLGL
                     DLFAGSGSLGIEALSRGMDKVIFVDQNIRAVKVIQHNLKKLDLTHQAEVYKNNADRAL
                     KALNKREIQFDLIFLDPPYEKGLIDEALKSIHQFDLLKQNGIIVCEYSHRESIDTSLF
                     EEVKRYHYGLTDTCVLKKGESHG"
     gene            10701..11192
                     /gene="coaD"
                     /locus_tag="PTC08_000156"
     CDS             10701..11192
                     /gene="coaD"
                     /locus_tag="PTC08_000156"
                     /EC_number="2.7.7.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HDK5681694.1"
                     /translation="MVNTKAVIPGSFDPITKGHIDIVERSADRFDELHVCVLRNSSKK
                     GTFTVEERLELIEKSVAHLPNVYVHSFSGLLVDFCDEIGATTIIRGLRAVSDFEYELR
                     ITSMNKKLNDKVETLYMMSSTDYSFISSSMVKEVAQYDADISEFVPKHVEEALLKKFK
                     LDK"
     gene            complement(11526..12662)
                     /locus_tag="PTC08_000157"
     CDS             complement(11526..12662)
                     /locus_tag="PTC08_000157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase"
                     /protein_id="HDK5681695.1"
                     /translation="MKSVAMITEYHPFHHGHLYHAQQSKKLSQSDVAIAIMSGQFMMR
                     GLPAMYNKFKRAQMATVGVDLVVEMPLVGSLSSSDIFAQTGVKVADYLQTDVLSFGSE
                     SGDLSQLEHAAQQLIQLEQTSAFQTAIKSGKSYARIAAETLQSDLLSTPNNILAIAYL
                     KQLHLQRSSMQPMTVTRAHAQHHDSEMHHTSIASGTAIREGIMSGDRTWQKMVPEQNI
                     PLMTIPFHDQQRLFDLIKFAILQHTPETLKQIYTMSEGFENRLYRAALSATDYTTFMH
                     ALKTKRYTYTHIQRILMNVLLHFQYADVTEDVHAVRVLAMTPQGQRYLKYLKVHFPER
                     RIVTSIHRETAKLFPNEVKATNIYNVLTGDTMTDFNTPVYIRKR"
     gene            12789..13328
                     /locus_tag="PTC08_000158"
     CDS             12789..13328
                     /locus_tag="PTC08_000158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF177 domain-containing protein"
                     /protein_id="HDK5681696.1"
                     /translation="MKWSITQLRKYQGQPFKFNQTVTFNHLIQNLDLLDLSPIDIEGE
                     LIVKSNEVVATMHLTGQYKMACARTLVPVDVPLDATTTEVFDLDGLYEDEDDEHYHLV
                     TNGMIDLREIAEEIVMLEKPMRVVADDSDQMLTGGQGWEVIDEDNLDNDPSQDESHVN
                     VDPRLQKLQQLYDDSNHAR"
     gene            13385..13558
                     /gene="rpmF"
                     /locus_tag="PTC08_000159"
     CDS             13385..13558
                     /gene="rpmF"
                     /locus_tag="PTC08_000159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019469283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HDK5681697.1"
                     /translation="MAVPKRRTSKTRKNKRRTHFKLAVPGMQECPNCGELKLSHRVCP
                     NCGSYKGEEVVSK"
     gene            13672..14418
                     /locus_tag="PTC08_000160"
     CDS             13672..14418
                     /locus_tag="PTC08_000160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA methyltransferase"
                     /protein_id="HDK5681698.1"
                     /translation="MEAITSIQNPKIKNYNKLKKKKERDKQGLAILEGFHLIEEAVES
                     QIKVTQLFMIEPSRVPTELIEAAEEVYEITQKVAETLSGTVTPQGIFAIIEKPQVDVT
                     AAKQVLILDRIQDPGNLGTMIRTADAAGLDLIVMTKGTADVYQDKVLRASQGSVFHIP
                     IQYVDDMSAWMSSFKGPIYGTALQDATTYHQVASQQDTFALILGNEGEGVAMDLLAHT
                     TQNLIIPIYGQAESLNVAVAAGILMFYLKG"
     gene            14827..15897
                     /gene="pheS"
                     /locus_tag="PTC08_000161"
     CDS             14827..15897
                     /gene="pheS"
                     /locus_tag="PTC08_000161"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HDK5681699.1"
                     /translation="MVQNEAMIQIKNEAMTDIEQAQDEKALQDVKVKYLGKKGQVTGL
                     MKQMKDLPKEDRPAYGQRVNEVRQAIEGAVAERQTLLAEAQLNQQLAEESIDVTLPGR
                     TVATGAQHPLTRTVEEIEDLFLGLGYEIVTGFEVEQDYYNFEALNLPKSHPARDMQDS
                     FYITEEVLLRTHTSPVQARTMEQRNGQGPVKIICPGKVYRRDSDDATHSHQFTQIEGL
                     VVDENIKMSDLKGTLELLAKSLFGADREIRLRPSYFPFTEPSVEVDVSCFKCKGKGCN
                     VCKHTGWIEILGAGMVHPNVLEMAGFDSKKYSGFAFGMGPDRIAMLKYGIEDIRHFYT
                     NDIRFLNQFKAVEDRGEQHVNI"
     gene            15884..18289
                     /locus_tag="PTC08_000162"
     CDS             15884..18289
                     /locus_tag="PTC08_000162"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HDK5681700.1"
                     /translation="MLISKEWLETYVDLDVSIEALAERITRTGIEVDDIQDFTKEIKN
                     LVVGYVEEIAQHPDADKLNICQVNIGEETPVQIVCGAPNVGAGQTVIVAKVGGRLPGG
                     IKIKRAKLRGQVSEGMICSLQEIGLPSNVVPKKFEDGIYQFATAIEPGTDALKALYLD
                     DQMMEFDLTPNRSDALSMIGTAYEAAALYDKQVRKPETTVTAQPKAAHETLTVKVEDT
                     TQVPYYSARVVENVQIAPSPEWMQARLMKAGIRPINNVVDISNYVMLEYGQPLHMFDK
                     DHIGSNDIVVRLAHENEKMTTLDDQERELLSSDIVITNGQQPIALGGVMGGDFSEVTP
                     ETKNVIVEGAIFNPVAIRHTSRRLNLRSESSSRFEKGIATEFLDEAVDRACFLLETLA
                     QGQVLDGRVTDGDLGALVTDITITADKVNRTVGFDLTEADIVRVFEQLGFNTEITNND
                     IHVKVPSRRRDITIEADLIEEIARIYGYDNIPSTLPVFEDVTSGALTDRQRKTRVVKR
                     TLEGAGLSQAITYSLVDRERATAFTTTTHQTVELLMPMSEAHSTLRQSLIPHLIDATQ
                     YNVARKNQDIALYEIGNVFFGQEGQTLPEQVEYLSGIMTGEYVSNPWQGKKEVVDFYL
                     VKGIVERIADQLALRFEYETTQIDGLHPGRTAAVTLNGEAIGFIGELHPTVAKTYDLG
                     RTYVFELNYEKIMQQSVGYINYQPIPKFPGVTRDIALVVASEVRAASLVHTIHQNGGA
                     ILKDARVFDVYEGEHMEAGKKSVAIRLTYLDENNTLTEEQVTKVHQAILAVLEAQGAT
                     LRG"
     gene            complement(18401..18994)
                     /locus_tag="PTC08_000163"
     CDS             complement(18401..18994)
                     /locus_tag="PTC08_000163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkylmercury lyase"
                     /protein_id="HDK5681701.1"
                     /translation="MNFTQGLTEAENDLRLEMIHYICDNPETPLKVKPEYQTLINKNV
                     VVAENGELISIYPISLKATNKKVYTNQNTSPVFAMCAIDAIGVHYTIHSNITIESEDE
                     LMHTPIHFEMKDGHIINRNEHDIFVLYKDVLKKENCNVDCCPYIHFFTSEQNALEYLK
                     QVQYTGPYQILNLDEANETAKALFRYQPVECGRCCQS"
     gene            complement(19786..20724)
                     /locus_tag="PTC08_000164"
     CDS             complement(19786..20724)
                     /locus_tag="PTC08_000164"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HIII"
                     /protein_id="HDK5681702.1"
                     /translation="MTNIVKKLNANEIEQLLKHLHPDTQDLPTGMRARAKYEGVTISI
                     YNSQKVMFQGKNAEALWRKLIDHSERKSPAKSKSKKKPVTSTQYIRYNAHSCIGSDEA
                     GSGDYFGPLTVCACYVSAQHIPILKELGVDDSKRLTDKKIVALAEQLVTFLPHSLLVL
                     DNPKYNERKQLGWSQVKMKAVLHNECIKNVLKKVDATEVDYIVIDQFAKQEVYEHYAL
                     GAIPERQKTQFETKGESKSLAIAAASIISRYAFVKHMDQLSKRYRMEILKGASHKVDV
                     TAAKVIEKYGLEVLDGMSKSHFSNRNKALALVNSKR"
     gene            20867..21133
                     /gene="zapA"
                     /locus_tag="PTC08_000165"
     CDS             20867..21133
                     /gene="zapA"
                     /locus_tag="PTC08_000165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapA"
                     /protein_id="HDK5681703.1"
                     /translation="MGEFKNRINVTINDQNYTILGEDDPERIRYVADLVDGKIRELGR
                     RNAGLDSVRKAVLTAVNVMHELVLLEEENALLREEIQRLKHRGH"
     gene            21135..21656
                     /locus_tag="PTC08_000166"
     CDS             21135..21656
                     /locus_tag="PTC08_000166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CvpA family protein"
                     /protein_id="HDK5681704.1"
                     /translation="MYLLFIIIVLLLFAMTGFHRGWNVSALHLGSTFFSLWVAAQFYQ
                     PLSHYFRLFIPYPRTVAYDTQFAMDIAQPEVRFNYVIVFLLLVMIVKTMLYFVIGSFN
                     GVFALQRLGWSSRIIGACLACCSGIIFIHFTCYVTALYPNEMMQYALAQSQVAQWFIN
                     GIPFLSEFTLNLK"
     gene            21729..23438
                     /gene="polX"
                     /locus_tag="PTC08_000167"
     CDS             21729..23438
                     /gene="polX"
                     /locus_tag="PTC08_000167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase/3'-5' exonuclease PolX"
                     /protein_id="HDK5681705.1"
                     /translation="MTKKDVIRLLEEIATYMELKGENAFKVSAYRKAVQSLEADERTM
                     DQIDDVTELKNIGKGVGEVINTFLETGDSPTLNALKKEVPSGLIPLLKIKGLGSKRIA
                     RLYQELNITDKDSFQKAAENHEISALDGFGKKTEEKYLEAIRELGAKKDAYPIDTMKG
                     LNTLITKHLQSIEAIERFEVAGSFRRKKEMSKDLDYIISTNDPLEVQQQLLAIPEKVE
                     EVAVGKTKVSLELAFDDETIGVDFRLIEPAAFYHTLQHFTGSKEHNIRIRQIAKQTNE
                     KVSEYGIEQPDGSLLQFDSEAAIYEHFGVKWMAPSMREDGTEFDKDLSEIVTLDDING
                     DIHMHTTASDGAFSLREMVEANIEKGYQFMCITDHSQSLRVANGLSVDRLLKQNEEIK
                     KLNQAYPEIDIYSGTEMDILPDGRLDYDDEVLAQLDYVIAAIHQSFNQSEEEIMKRLE
                     AACRNPYVRHIAHPTGRIIGRRDGYAPNMTKLIELCRETGTVLEINANPKRLDLSAEV
                     LRQNPGLKVTINTDAHHVDHLNFMNYGIATAQKGFVKKEDVVNAMSRQAFKQFITQPK
                     SVE"
     gene            23454..25802
                     /locus_tag="PTC08_000168"
     CDS             23454..25802
                     /locus_tag="PTC08_000168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease MutS2"
                     /protein_id="HDK5681706.1"
                     /translation="MKQKTLEILEFNKVKSLIEQEVISDLAIEKVKQLAPSSDYETVV
                     HQMDEVDEISRIYNQYRLPSMSGLSRVQPYIKRSQIGGTLNVQELNAIKTLIQVQNQF
                     KTFYNQLVEDEETVNYEILDGQMQQLPVLTHLYQSIHQKCDTQDLFDSASMELQAIRS
                     RIAKTNQRVRAQLDRMVKSTSNQKKLSDAIVTVRNERNVIPVRAEYRQDFNGIVHDQS
                     ASGQTLYIEPSAVVELNNQISRLRSEEATEVQRILAELTAEVAEEAEACLISEQVMGH
                     LDFLIGKARYAAKIKGTKPTFAVERQVYLPKAFHPLLDRDTVVANTIEFESSIQTVII
                     TGPNTGGKTVTLKTLGLIILMAQSGLLIPTLDGSQLSVFDNVFCDIGDEQSIEQSLST
                     FSSHMKTIVNILEEANDKSLILFDELGAGTDPSEGAALAMSILDHVHGMGALVMATTH
                     YPELKAYSYNREGVMNASVEFDVDTLSPTYKLLMGVPGRSNAFDISKRLGLGLKIINH
                     AKSMIGQDEQEINEMIASLEKNAKRVDDQRIELDRLVREASQIHNDLSRAYEQYQNME
                     SRLIEEAKDKANQRVKAAMEEADDILKSLRDMRDQKGAEVKEHELIDQRKRLEDQYEA
                     KSIKQNVQKQKWDEIKAGDEVKVLSYGQKGEVLEVLSDEEAVVQMGIIKMKLPLSDLE
                     KKEKAKEQPKKVVTRTNRSTVKMELDLRGYRYDEAMVALDQYLDQAVLSNYEDVYIIH
                     GKGTGALQKGVQQHLKRHKSVATYRGGMPSEGGFGVTVATLK"
     gene            25881..26195
                     /gene="trxA"
                     /locus_tag="PTC08_000169"
     CDS             25881..26195
                     /gene="trxA"
                     /locus_tag="PTC08_000169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HDK5681707.1"
                     /translation="MAIIEVKDSNFDEQIQSGVKLVDFWATWCGPCKMIAPVLEDLAV
                     DYEGKADILKLDVDQNQATAAKFEVMSIPTLIVFKDGQPVDKVVGFQPKENLAQVLDK
                     HV"
     gene            26462..28249
                     /gene="uvrC"
                     /locus_tag="PTC08_000170"
     CDS             26462..28249
                     /gene="uvrC"
                     /locus_tag="PTC08_000170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HDK5681708.1"
                     /translation="MEETQSRIKQKLGVLPMEPGCYLMKDRQNQVIYVGKAKKLRNRV
                     RSYFTGAHDTKTTRLVREIVDFEYIVTSSETESLLLELNLIKKYQPRYNILLKDDKSY
                     PFIKITKERHPKLIVTRTVRKGSGKYFGPYPNAYSAHETKKLLDRIYPFRKCDKMPDR
                     LCLYYHIGQCLGPCVYPVQQEEYGRMTKEITDFLNGEDKTILKNLEEKMIKASENLEF
                     EQAKEYRDLIQHVNNLTKKQKIMSVDQTVRDVFGYHVDKGWMCIQVFFIRQGNLIERE
                     ATMFPLQQTPEEEFYTFIGQFYQLNQHFLPKEVHIPKQLDVEMVHTVVDTNIVTPQRG
                     QKKQLVDMANKNARISLENKFELIARDESRTVKAIEQLADAMGIQIPIRIEAFDNSNI
                     QGVDPVSAMVSFVDGKPDKKGYRKYKIKSVEGPDDYKSMQEAVRRRYTRVLNEGLPLP
                     DLIIVDGGKGHMSSVADVLENELGLDIPIAGLAKNDKHQTSELLYGETAQVVPLKKNS
                     QAFYLLQRIQDEVHRFAITFHRQTRQKTGLRSILDQVEGIGPKRKTKLLRTFGSIKKM
                     REASVETLQEAGLPKKTAEVLFKALQEEG"
     gene            28413..29024
                     /locus_tag="PTC08_000171"
     CDS             28413..29024
                     /locus_tag="PTC08_000171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase cytochrome b558 subunit"
                     /protein_id="HDK5681709.1"
                     /translation="MAHSKNQFYLRRLHSLLGVIPLGGFLLVHLLVNHQATQGVEAFN
                     KAASMMESLPFLYALEIIMIYIPILYHAVYGVHIAFTASHNIGHHSYMRNWMFLFQRI
                     SGILTFIFVMIHMWQTRIQKFFGQEVNYDMVHDIVSNPIWLVFYIICIIAVVFHFSNG
                     LWSFLVTWGILQSPKSQKVFTWVSLVIFLVISYIGVSAILAFV"
     gene            29057..30823
                     /gene="sdhA"
                     /locus_tag="PTC08_000172"
     CDS             29057..30823
                     /gene="sdhA"
                     /locus_tag="PTC08_000172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019835741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase flavoprotein subunit"
                     /protein_id="HDK5681710.1"
                     /translation="MAEKKIIVVGGGLAGLMSTIKAAEQGAHVDLFSIVPVKRSHSVC
                     AQGGINGAVNTKGEGDSPWVHFDDTVYGGDFLADQPPVKAMTEAAPQIIHLLDRMGVM
                     FNRTAEGLIDFRRFGGTLHHRTAFAGATTGQQLLYALDEQVRSYEVDGLVTKYEGWEF
                     LGIVKDDENAARGIVAQNITTSEIQSFGSDAVIMATGGPGIIFGKTTNSMINTGSAAS
                     IVYQQGVKYGNGEFIQIHPTAIPGDDKLRLMSESARGEGGRIWTYKDGKPWYFLEEKY
                     PDYGNLVPRDIATREIFDVCVNQKLGINGENMVYLDLSHKDPHELDVKLGGIIEIYEK
                     FTGDDPRKVPMKIFPAVHYSMGGLYVDYDQMTNIDGLFAAGECDFSQHGGNRLGANSL
                     LSAIYGGTVAGPNAVKYVENIEKSYVDMDDSMYQKRVDEEQARFDKLLNMKGSENAYK
                     LHRELGEIMTANVTVVRHNDKLLETDKKIVELMKRYQDIDMEDTSQWSNQAVFFTRQL
                     WNMLVLARVITIGAYNRNESRGAHYKPEFPERNDDEWLKHTLAEYKGPDAPPAFTYKP
                     VDVSLIPPRKRDYTSKSKGGKK"
     gene            30823..31638
                     /gene="sdhB"
                     /locus_tag="PTC08_000173"
     CDS             30823..31638
                     /gene="sdhB"
                     /locus_tag="PTC08_000173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase iron-sulfur subunit"
                     /protein_id="HDK5681711.1"
                     /translation="MAETQEKQQTSQQVQNSTSNKTIKLIIKRQKDQNSSPYEESFEI
                     PYRENMNVIAALMEIRRNPINTKGEKTTPVTWDMNCLEEVCGACSMVINGKARQSCSA
                     IIDQLEQPIRLEPMTTFPVIRDLQVDRTRMFDNLKRMKAWVPIDGTYDLGPGPRMPEK
                     KRQTAYELSKCMTCGVCLEVCPNVTKTNSFVGAQAISQVRLFNLHPTGAMTKDERLDA
                     LMDQGGLQACGNSQNCVQACPKGIPLTTSIAAMNRETSFHMFKSFFGSDHEVE"
     gene            31889..32686
                     /gene="racE"
                     /locus_tag="PTC08_000174"
     CDS             31889..32686
                     /gene="racE"
                     /locus_tag="PTC08_000174"
                     /EC_number="5.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate racemase"
                     /protein_id="HDK5681712.1"
                     /translation="MDRPIGVMDSGVGGLTVAKEIMRQLPNETIYYLGDVARCPYGPR
                     DQEEVKKFTIEMANYLVQYDIKMLVIACNTATAVALEPLQEQLKIPVIGVIEPGARTA
                     IMTTKNQNVLVLGTEGTIKSEAYRTHIKKINPHVDVYGVACPGFVPLVEEMKYKDPTI
                     TNIVIHQTLKSWRQTEADTVILGCTHYPLLYQPIFDYFGKTKTVISSGLETAREVSAL
                     LTFSHEHAHYTPQPKHRFFANGEVRHMTYIIQEWLKIDAEVERIQLG"
     gene            32698..33282
                     /locus_tag="PTC08_000175"
     CDS             32698..33282
                     /locus_tag="PTC08_000175"
                     /EC_number="3.6.1.66"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XTP/dITP diphosphatase"
                     /protein_id="HDK5681713.1"
                     /translation="MADIVIASSNQGKINDFKVIFSEDNVIGINEMIEDFDVEETGTT
                     FEENARLKSEAAAKLLNATVIADDSGLEVAALNGEPGVYSARYAGVQKSDEANIEKVL
                     KGLENEENRAARFVCVISMTTATGETTTFKGTVEGEITLSQIGENGFGYDPIFLIPER
                     QKTMAQLTAEEKSEISHRRKAIDQLKAYIEGEEK"
     gene            33279..33788
                     /locus_tag="PTC08_000176"
     CDS             33279..33788
                     /locus_tag="PTC08_000176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfcE family phosphodiesterase"
                     /protein_id="HDK5681714.1"
                     /translation="MKKLIILSDNHSETGILYDVYQQHEDADAFFHLGDSEFKYDDTE
                     LSLFHRVKGNMDFYPEFPDNQVTSVGSHRIFFTHGHLYSVNSSRQQLAQAAIAHEAII
                     ALYGHTHVAKYEQIHGVHVINPGSISQSRSDIEETYAEIILEGTDSFVNFRNRHHDII
                     DKVTFQIEE"
     gene            complement(33979..34044)
                     /locus_tag="PTC08_000177"
     CDS             complement(33979..34044)
                     /locus_tag="PTC08_000177"
                     /inference="COORDINATES: protein motif:HMM:NF033428.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="epsilon family phenol-soluble modulin"
                     /protein_id="HDK5681715.1"
                     /translation="MFIIDLIKKVIEFLKGLFGNK"
     gene            34697..35236
                     /locus_tag="PTC08_000178"
                     /pseudo
     CDS             34697..35236
                     /locus_tag="PTC08_000178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500659.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="CHAP domain-containing protein"
BASE COUNT        11589 a         6019 c         7471 g        10237 t
ORIGIN      
        1 atcattttta caccagaatc ttttaatcac acctcattta ttgatataat agagattgta
       61 tttttagaat tttcccacta ttaaggaggt tcacttcatg aagcgtatac ataaattatt
      121 agtcgctaac cgcggtgaaa ttgctattcg aatttttcga gccgcaacag aattgaatat
      181 taaaacggta gctatttatt ctaaggaaga tatggggtca ttacaccgat ataaagcgga
      241 cgagtcttat ttagtcggtg aaaacttagg tccagcagaa agttatttga atattgaaca
      301 gatcattaaa gttgctaaag aggcaaatgt tgatgccatc caccctggtt atgggttttt
      361 gagtgaaaat atgcagtttg ctcaacgctg tgctgaagag ggaattgttt ttatcggtcc
      421 acatgtcgaa catttagata tgtttgggga taaagtgaaa gcacgtgcca ctgcaattaa
      481 agctgatttg cctgtgattc caggtacaga tggccctgtg gcaggatttg aagaggcaca
      541 aacgtttgcg gaaaaagccg gctttccgtt gatgattaaa gcaacaagtg gcggtggcgg
      601 taaagggatg cgtatcgtca gagaaccatc tgaattacaa gaggcgttca ctcgtgctaa
      661 atctgaagca gaaaagtcat ttggcaatag tgaagtgtat attgaaaaat ttattgatca
      721 accaaaacat attgaagtac aagtgatggg tgacgaagcg ggcaacatca ttcaccttta
      781 tgaaagagac tgctcggttc aacgccgtca tcaaaaagtg gttgaagtag ccccatcagt
      841 cagcttacca gataatttgc gcgaacaaat ttgtgaagcg gctgtcgatt taatgcgcca
      901 aattcaatac gtgaatgcag gaacggttga atttttagtt tctggcaacg aattttactt
      961 tattgaagtg aatccacgtg tacaagttga acataccatt acggaaatga ttacgggtgt
     1021 cgacattgtt aaaacacaaa ttttgattgc agatggccag ttattacatg acgacgcgat
     1081 tgcaatgccg caacaaagtg atattcgcac gttaggttac gcaattcaat gccgtattac
     1141 gactgaagat ccaacgcaag atttcatgcc ggatacaggg cgtatcgtgg cctaccgatc
     1201 gagtggaggg ttcggtgtcc gtttagatgc tggcgatgca ttccaagggg cagaaatttc
     1261 accgtattac gattcactac tcgttaaagt gtctacgcat gcaatcagtt ataaagaagc
     1321 aagagaaaaa atggcacgct ctcttcaaga aatgcgtatt cgtggtgtga aaacgaatat
     1381 tccattttta cgtaatgtga ttcaacatgc caagtttgct tcgggtgatt acacgacgaa
     1441 atttttagaa gaggcaccag agttattcac aattaaaacg tcacgtgata gaggtacaaa
     1501 aacgttagaa tatatcggga atgtaacaat taacggcttt ccaagtgttg aaaaaagacc
     1561 gaagcctcat ttcgagaaac ctcatattcc gacgacagat acgaaggcga ttgcttcatt
     1621 aagtggtacg aaacaattac ttgatgcaaa agggcctgat gccgtaacag catgggtgaa
     1681 agcacaagaa gacgtattgc tcactgatac gacattccgt gatgcacatc aatctttgct
     1741 cgcaacacgt gtgagaacgc atgatttact caaaattgcc ccagaaactg cacaagtgat
     1801 gaaagataac ttctcacttg aattatgggg tggcgcgacg tttgatgtcg cctataattt
     1861 cttgaaagaa aatccatggg aacgtctcga aaaattaaga aaagccattc cgaatgtgtt
     1921 attccaaatg ttattacgtg cttctaatgc agtcggttat cgcaattacc ctgacaatgt
     1981 cattcaaaag tttattgcgg aaagtgccga tgcagggatc gacgtcttta gaatatttga
     2041 ctcattgaac tggttagaac aaatgaaagt cgctaacgaa gcagtccaaa aagccggtaa
     2101 aatttctgaa ggaacgattt gttatacagg tgatatttta aatcctgaac gttctaatat
     2161 ttatacgttg gactactatg taaaactcgc gaaagagcta gagcgtgaag gtttccatat
     2221 gttagcgatt aaagatatgg caggattatt gaaaccaaga gccgcctatg agttaatcgg
     2281 tgaattgaaa gcagctgttg acctgccgat tcaccttcat acacacgata cgagcggtaa
     2341 cggaatcctc acttataaag aagcaatcga agcgggcgtt gacgtcattg atacggcagt
     2401 tgcggcaatg tcaggtttaa caagtcaacc aagtagcaat tcattgtatt atgccatgag
     2461 tggctttgaa cgtaatattc gtatggatat tgaaggccat gaaacacttt cgcattattg
     2521 ggatgcagta cgtccgtatt atagtgattt tgaaagtgat atgaagtcgc cacatacaga
     2581 aatttatcaa catgaaatgc cagggggcca atattctaac ttacgacaac aagcgaaaag
     2641 tttaggactc ggtgaacgtt tcagtgaagt gaaagacatg taccgacgtg tcaacttcct
     2701 cttcggtgat attgtgaaag tgacaccatc atcaaaagta gtcggcgata tggcgctcta
     2761 catggtacaa aatgaattgg atgaaacgtc tgtaatcgag caaggccata agttagattt
     2821 ccctgaatct gtggtctctt tctttagagg cgatattggt cagccagtga atggatttaa
     2881 cgagacattg caacgggtca ttttaaaagg ccaacaacca ttaactgcac gtcccggtga
     2941 atatttagca ccgattgatt tcgaagcttt acgcgaagaa ttacaagaaa agcaacaagc
     3001 tcaagtgacg gaacaagact taatcagcta tgcattgtat ccaaaagtgt acgaacaata
     3061 tatgcaaact tatgaaatgt ttggcaatgt ttcaaagtta gatacaccaa cattcttctt
     3121 cggtatgcgt aacaacgaga aaattcaaat cgaaattgat aaaggtaaaa ttttaatcgt
     3181 tgagttgaaa accattacag aacctgatga aaatggtgtg cgtactgtat tctttgatat
     3241 gaatggtcaa gcgcgtcgta ttcaagtgaa agacgaaaat attcaaacgt cccatttagc
     3301 gaaaatgaag gcagataaga gcaatccaaa ccatatcggt gcacaaatgc cgggtacgat
     3361 tattgaagta aatgtcgctg aaggagatca agttgaagcg gggcaatcac tcattattag
     3421 tgaagcaatg aagatggaaa caacagtaca agcgccgttt aaaggaacga tttcaaaaat
     3481 ttatgtggct gcaaacgata gcgtcgaaac ccaagattta ctcattgaaa ttgaaccaga
     3541 agtatagagg taaatttgga agattaacga taaaaccgac atttattatt ttatccagga
     3601 tatggaaacc cgaataacaa agcaatcaaa aagacatcaa acaacgattt ttgctgtttg
     3661 atgtctttta aaacttgtat cattttaagc ttgttgatct ccacgattcg tacgtaggat
     3721 taacaagatg aaatagctaa tcataccgaa cagtaacgtg ataaataacg catgaagtaa
     3781 agcgatgatt aaattcacgt tagtcacgat agagagtgcc cctgttaaaa cttgtaaaat
     3841 aattaaaata aagctcactg tataaccgta gtgaatcgtt ctcattgttg gataatgttt
     3901 gactgcatgg atatacgtga acataatgat gaaaaacgct accatcgcca tcagtctgtg
     3961 tgtcagttga acccagtcat gtacatcatg aggcacaata tcgttaaatg gtaatggcca
     4021 tgcaccgtat gcaagacttg aatctgtatg tctgacaagt gcgccagtat aaatcgttaa
     4081 atatacaaca atggtcatca accacgtata gcgctgcaat ggcttacgga tatggacttt
     4141 attggcttca tattttttgt ccatgtcgaa aatgattaat gtcaacacga aaacggacga
     4201 gaagctaata agggaaatgc cgaaatgaag tgccaataca taatcatttt gttgccacat
     4261 gacggcagca gcgccgatta aagcttgaac gagtaaaaag ccaatgctaa tcacacctaa
     4321 aggctttact tctttaatat gccctatgtt tttccaagat gtaatcacaa gccatgtcac
     4381 aaaaattaca gataatccag atacagctct gtgactcaat tcaataattg tttctatcgg
     4441 taggttttgt ggtaataatg cgccatgaca tagcggccaa tctgaaccac aaccatcttc
     4501 agaacctgtt tttgttacga gtgcaccacc aagctgaacc caagtcataa tcaacgtcgt
     4561 tacgacagca agccacttta ggtttcgctt tttaaacaat ctcaaacacc tcattatgta
     4621 tcaaagttaa ataatcgcta ttcatcaata ccacccacat tataacaaaa actgaactaa
     4681 aaaatgtgaa tttatcatga cgttttttga atgtcgttaa agtgtcacaa atttttctta
     4741 tttaacctag tcattcacga cgctttcata tatcataaat gtatatgtta ttttaagggg
     4801 gagggaactg atgtccaaat cagaggttgt atcacaaact tccggtcgta ttacttataa
     4861 agagctgaaa caaatcatta agttaggtct tgttcaaggc aacttaattc catcatttgc
     4921 gggcgcatgg ttggctatcg tcatgacaca tcatgcattt ttagctgcta ttccacaaat
     4981 tattgtgatg atcataggtt ctacgttagt aatgggcgga gcatgtgcat tgaacaattt
     5041 ctatgaccaa gatattgatc gattaatgcc aagcaaacaa aatcgaccaa ctgttaacaa
     5101 tcgtatttca gatcgtcatt tattgttatt aagctttggt atgatggtcg ttggtgaaat
     5161 attattgttc atgttgaata tgcaagcagg tgttattgga ctcgttggta tcgttggtta
     5221 tgtctcattt tattccattt ggtcaaagcg acatacgaca tggaatactg tgataggcag
     5281 tgtgcctgga gcggtaccac cattaatcgg ttgggttgca attgaaggtc acttaagttt
     5341 gatggcctgg gcattatttt tagttgtgtt ttgttggcag cccattcatt tttacgcgtt
     5401 agcaattaaa cgtaaagatg aatatgcaac tgcacgtatt ccaatgttac catctgttaa
     5461 aggtttttcg cgcacacgtg tcggcatgtt tttatggttg atcgcattat taccacttcc
     5521 atttttaatg caagatttag gtgtcgtctt cgtcgtttta gccacgttac tgaacgtcgg
     5581 atggattgca ttagggctta caagttttaa atcgtcagcg aatgaaacaa aatgggcaac
     5641 aaaaatgttt atttactcat taaactatct tgttctattt tttgcacttg ttgtcgtgat
     5701 ttctttaata caattaattt agaagatcta cgagtgagga atgaataaaa tgaatgtacc
     5761 tattttacct acgttaagta caacttgtat tgtaattagt gccattttag tcgctatcgg
     5821 ttggcgcctc atctggaagc gtcaaattga gcgtcataaa aaaacgatgc tgtgggctgc
     5881 tattttcgca gttgtctttt ttacaattta tgcgagtcgt actatcttta ttggtaatac
     5941 agcatttgga ggaccagatt cagtaaaagt ttattacacg attttcttgg ttttccacat
     6001 tacactagca acagtggggg cagtacttgg tttaatccaa atttttacag gtttaaaaga
     6061 tcgttacagc gttcaccgta aaatcggacc tgtcgcatca gtgatttggt tttttacagc
     6121 gattacaggt gtagcggtat atattttact ttatgtgctt tatcctggtg gcgaaacgac
     6181 gtcgcttatt aaagcaacat ttggtttata ataaaaaagc aacagatggg aaatcattct
     6241 gttgcttttt tatttgcaca ttgaagtcaa tcatttgatg aatcattgat atgaatagag
     6301 ccaatttaaa agtaagtgtt ttctatttta atttcgctca atatcgttaa aaacaaaaaa
     6361 gaggtaaaac gcagccgcat gttttactgt aaacagtttc cataaccata caattaattg
     6421 taaatcaaaa ggcttttaaa aacctggaaa aatcatagtg aataaataag ggattgttta
     6481 taaagtcagt catcaagcta ttttgagatt ctaattaaat gtgtagaatt tatagagcgt
     6541 atgaggtata tagtgctgac atttagagct caactgtcat tgtacttcaa ttgaagcata
     6601 tgacaaggtg atgaagtttg atatgcgtgt atgacaaaat ttcgacgtct attttgttaa
     6661 tagtagaaag tctttttcaa cagtgatacg ataaagtgaa atcagtggat tggttatttt
     6721 ttaactttgc ccattcacaa agtggttgaa tgttttataa tgaaaagtga gttttaaagt
     6781 cggataagtc aatatgaacg attttatcta tattaattga aataaaacga taatgaaaat
     6841 gaggggggaa cgtatgcgaa gaaaattgat taaagtatta gcggtgttgt tattagtcgg
     6901 ctttttagtc tatttatttt attcccctca acttgaattt gatgtactag aaaacccaaa
     6961 tcgcgccaat catcaacaac ctgaaaagcc taaaaatgtg aaccaaaatg aggggcagaa
     7021 tccgccattg gaaagtggtg tcggaacgta tatcggcaaa tcacttaatc aaatcacatc
     7081 acaatttgga acaccggatc gcatttattc ttttcagcaa ggctatcgta aatacattta
     7141 taaaggtgac aaacggtata ttatttttgc ggttaaagat gacaaagtga agtctgttta
     7201 tgtgacgggc aaaaatacgg aaaaattaac ggggcctatt aaaattaatg aacaagcgtc
     7261 cgatttgttt gataaatttt caatcaatac agagcctcaa tttaaagtga atggacaaac
     7321 gtatcattac gaactatcgg ataaagacgt taaaacacaa gctttaatcc agtttgatga
     7381 tacatttgcg caagtgttta tagatcaaca aaaaaataaa gtactcggat tacgctattt
     7441 agataaagaa gctttggcag atatgaatcc gtatgcacaa aataatgaag aaacgacgtc
     7501 tcaagaaaca gaagcatcag aagaagaagg agcgcgtcct gcagatcaaa atgtgaatga
     7561 gcgactcacg ttatacgaat taacgaatga aatgcgtcaa ctgaatgaac gtcaaccttt
     7621 aaaagtgaat gatacgcttg aaaatgtcgc aacggttgat ttgtttaatt atggtaatca
     7681 aaaaaatacg gaatttacag aagagaattt gattaatttg atgaaacaaa caccacttaa
     7741 ctatcaatct gtttctcaga atgtagggta taactttaac gatgtcccta cgttggtaca
     7801 cagttggatt aattcagatg ttcaccgttc acgtatgctc aatgcaaagt atgttgaaat
     7861 gggtggagaa gtccagtacc aatactatat gttaatcttt ctagagaaag gggagaacgc
     7921 gtaacatgta cgatgaaccg ttgatgcaag tacttgatca aaccgatgac ttagccgatc
     7981 aaattcgcca atctgatttg tttattactt atcaaaaagc aaaacaagct ttagtggaag
     8041 atcgagaagc acaacgatta tatggtcagt ttttgaaaag taagattaat tatgatgaag
     8101 tgcaacgatt tggacgttat caccctgatt atcaagaagt gatgctaacg acgagacgac
     8161 tgaagcggga atatgaaatg catgatactg ttgtcgcatt taagcaaagt gaaacggcac
     8221 ttcaacaatt attggatgag attgttacga tgattgcgac aagcgtatca gagcatgtca
     8281 aaatcgatgc gggaacgccg ttgtttgaag cgttaacgac aggtggggga tgtgctacag
     8341 gtgcgacgtg tcaatgccga gtttaagtaa atgaaaattg aatatatcat aaaagtggtt
     8401 aggaaatatt atcctaacca cttcactgta ttaaggctgt tgttggcgat aggcagtgag
     8461 aaactgacga ccgagtgatg ggcgatctgt cacgatagta tgcacaccta gcgacagaag
     8521 atggtgcatt aaatcgacac tattaacgtc ataatagccc ggcattcgat tcgtgttgtt
     8581 caaccattga atcagcttcg gttgaacgag cggaatacca tggaagtgtg ttggcatttg
     8641 gaatgtttgc gcttttccgt gataaaagtg tttcaaacct gaataaagtt ttaaaatgcc
     8701 ctctgtcact tcagcttggc ttgccccaat tgctacagtt ccttggctaa ttttatggaa
     8761 acgttcaatt tgttcgcgat aaaaacttgt gacgagcacc cgtgatttag cttcatgttg
     8821 tacaatgaca tcgtataagc gttgagcagc aatttgtcct tcatagctat ctggatgatc
     8881 tttaatatca atattcacaa gttgttcagg gtaacgcgac aaaagctcac ccattgttaa
     8941 aatttttgca tctgggtgat tttggtaagg acggtcgccg ttaatatctt taaaatggta
     9001 acccgcatct aacgctttca atgcatcaag tgtatgtgcg ctaacgggcc cagaaccatt
     9061 tgttgtacga tccacttcag catcgtgaaa gacaatcact tgttcgtctt tagaaatacg
     9121 aatatctgtt tcgaaaccag tcaattgcat ctgcacagaa taatcaaatg ccagtgcagt
     9181 tgactcagga cgttcaccca tgccaccacg atgactgaat aggtaaggcg cttggccact
     9241 aaaaaatgac ggtatcgttc gaagtgtagg tgtttttgta gtcttttgaa gtaatacggc
     9301 accagtcacc atggaaacag caccgaatag cattcctttt aaaatttgcg atttgcgtgt
     9361 catagtctaa tacctcctat agaataaagt gatacttatg ctttccgtag ttagcggcac
     9421 atggtacgat aataatgtga aattcgaggt gaaaaaatgg atatcataca acgtgaaaat
     9481 ataattattt atcttaaaaa catgaagcat gaacgtcata ttcgaaaata tggtcacatt
     9541 gtctatacga attcacaaca aaaatacgta tcgatgtatg tgaatcaaaa ggatattgac
     9601 gatgtggtga cgcgcctgat gaaactgaaa tatgtcattc gcgtggtcgg ctcaccttat
     9661 aaagatttga aacaagaata tccaaaagaa gcaaatgaat aaccttattc cagtgcggga
     9721 atccaatgtt gcaagcgtaa tacacttttt aaatagttaa agtataaatc aagctcagga
     9781 tagtcatcgg gtgcatggac atctacaccg accatttcga tatggtaggg tgctgcatat
     9841 gattgaatga gctcatattt acgattgctt tcgggataag gataacgcaa ggcatctaac
     9901 atgatataca tggcttgaaa cttacgccct tcagtaggct gcataatgat cgccacagat
     9961 gtcaattgat gtgtggactt tggtgtatgg aaaaagacga tgcgatcgat acgttcatga
    10021 ttatattcaa tgagcgtttt aaattcgtac agatccgtca atccgtgtcc taaaacgata
    10081 aaagattgtt gcatttgggt tcctcctctt aaaacaaagt atattaaaaa tgaaatcgga
    10141 ttggaagtgt aaaaacatgc gtgtcatcgc aggaaaacat aaaagtaaat cactcgaaac
    10201 attggaaggg cgcaatacga gaccgacgat ggacaaagtg aaggaaggta tttttaatag
    10261 tttacataca gttgaagggc tggggcttga tttgtttgct ggaagtggca gtttaggcat
    10321 tgaagcactt tctcgaggga tggacaaagt cattttcgtc gatcaaaaca tccgtgctgt
    10381 taaagtaatt caacacaatt taaaaaagtt agacttaaca catcaagctg aagtatataa
    10441 aaataatgca gaccgtgcgt taaaagcgtt gaataaacga gaaattcagt tcgatttaat
    10501 ttttcttgat ccaccatacg aaaaaggatt aattgatgaa gcgctgaaaa gtattcatca
    10561 atttgattta ttaaagcaaa atggtatcat cgtgtgtgag tatagccatc gtgaatccat
    10621 tgatacttca ctttttgaag aagtcaaacg ctatcactat ggtttaactg acacttgtgt
    10681 tttgaaaaaa ggagaaagtc atggttaata cgaaagctgt tattcctgga agttttgacc
    10741 ctattacaaa aggacatatc gatatcgttg aaagaagtgc cgaccgtttt gatgaattgc
    10801 acgtctgtgt attacgaaac agtagtaaaa aagggacgtt tacagtggag gaacgcttgg
    10861 aattaattga aaagtccgtc gcgcatttac cgaatgtgta tgtgcattcc ttcagtggct
    10921 tattagtaga tttttgtgac gaaattggtg caacaacgat cattcgtgga ttgcgtgcgg
    10981 tcagtgactt tgaatatgag ttgagaatta cttcaatgaa taaaaagttg aatgacaaag
    11041 tagaaacctt atatatgatg agttcgacag actattcctt cattagttcg agtatggtga
    11101 aggaagtcgc acagtatgat gcggatattt ctgaatttgt gccgaaacat gtagaagagg
    11161 cgttgttgaa aaagtttaag cttgataagt aaaatggaaa cgaatgaccc agatattgct
    11221 tttgagaaaa caatagaagt atacggttaa ttaagcatta aaaagatggt gagacatcat
    11281 taagatctta ttcggtaaaa ggtcaaattg tcatcactat caaatgtatt gtgccaaaat
    11341 aagtttggat tttgattatg ctaatacgat tgatatatat taggaagggc taggtaaaaa
    11401 atattttttg cctctagccc ttttcttacg atttaagaat acaatgcgtt gacagtctga
    11461 attaaaatag ttgaagttga tgccgaaaat aaaacatatt taaggcagca tgatatttta
    11521 atgatttaac gcttgcgaat atacacaggt gtattaaagt cggtcatagt atcgcccgtt
    11581 aaaacgttat aaatatttgt tgctttcact tcgtttggaa atagctttgc cgtctcacga
    11641 tgaatcgatg tgacgatgcg gcgttctgga aaatgtactt ttaaatattt caagtagcgt
    11701 tgcccttgag gcgtcatcgc caatactctc acggcatgga cgtcttcggt aacatcagca
    11761 tattgaaaat gcaacaacac attcattaaa atacgttgaa tatgggtata agtataacgc
    11821 ttcgttttta atgcgtgcat aaaagttgtg taatctgttg ctgacaacgc tgcacggtat
    11881 aaacgatttt caaaaccttc actcatcgta taaatttgct ttaatgtttc aggtgtatgt
    11941 tgcaaaatcg caaatttaat caaatcgaat aaacgctgtt gatcgtgaaa tgggatggtc
    12001 attaaaggta tgttttgttc aggtaccatt ttttgccatg tccgatcgcc actcatgatg
    12061 ccttcgcgaa tcgctgtacc actcgcgatg gaggtgtgat gcatttcgga atcgtggtgt
    12121 tgggcgtgtg cacgcgttac ggtcatcggt tgcatgctac tgcgttgtaa gtgcaattgc
    12181 ttcaagtagg cgatagccaa aatgttattc ggtgtactta ataggtcgct ttgcaatgtt
    12241 tccgctgcga ttctggcata acttttccct gatttgattg ctgtttgaaa agcggatgtt
    12301 tgctcgagtt gaatgagttg ttgcgcggcg tgttctaatt gtgataggtc accgctttca
    12361 cttccgaaac ttaacacatc agtttgtaaa tagtctgcta ctttaacacc ggtttgagcg
    12421 aaaatgtcac tcgatgatag tgagccgact aatggcattt cgactactaa atcaacacct
    12481 actgtagcca tttgtgcacg tttaaatttg ttgtacatcg cgggcaaccc acgcatcata
    12541 aattggccac tcatgatggc aattgcaacg tcactttgag aaagtttttt actttgttgc
    12601 gcatgataga gatggccgtg atgaaaaggg tgatactctg taatcattgc gacacttttc
    12661 atttgcattc tgtcctttcg tgtctcatta tgaatattgt atcagaactt aagatgttaa
    12721 gaaaaaatct tgacaactta actatcaata gttaaaataa attttgtgct tgttagaggt
    12781 gaagccatat gaagtggtca ataacacaat tgagaaaata ccaaggacaa ccttttaaat
    12841 ttaatcagac cgtaacgttt aaccatctga ttcaaaactt ggatttatta gacttgtcac
    12901 cgattgatat cgagggtgag ttgattgtta aatcgaatga ggttgttgcg acaatgcatt
    12961 taactgggca gtataagatg gcgtgcgcgc gtacgttagt gcctgtagat gtgccgttgg
    13021 atgcaacaac aacggaagtg tttgatttag atggtttgta tgaggatgag gacgatgaac
    13081 attatcatct tgtcactaat ggtatgattg atcttcgtga aattgccgaa gagattgtta
    13141 tgcttgagaa accaatgcgt gtcgttgcgg atgacagcga tcaaatgctt actggtggtc
    13201 aaggttggga agttattgac gaagataatt tggataacga cccatctcaa gatgaatcac
    13261 atgtgaatgt cgatccaagg cttcagaaat tacaacaatt atacgatgat agtaatcatg
    13321 cacgctaagt tttttgaact acgatgcgtc aaatgaatcg aataaaaggg aggatgaact
    13381 aaccatggca gtaccaaaaa gaagaacttc taaaacaaga aaaaacaaac gccgtacaca
    13441 ttttaaatta gcagtaccag gcatgcaaga atgcccaaac tgtggtgaat taaaattatc
    13501 tcaccgtgta tgtccaaact gtggttcata caaaggtgaa gaagtcgttt ctaaataata
    13561 gactttttac agtaactgga tattaatgta aaataggact ggaacaatca ctgttccagt
    13621 cctatttttt gagcagtaca tgaacataag atgaaatgag atgaacccaa aatggaagct
    13681 attacatcga tacaaaatcc taaaattaaa aattataata aattaaaaaa gaaaaaagaa
    13741 cgcgataagc aagggcttgc aattctagaa ggatttcatt taattgaaga agcggtcgaa
    13801 agtcaaatta aggtgacgca attgtttatg attgagccga gccgtgtgcc gacagaactc
    13861 attgaagcgg cagaggaagt atacgaaatt acgcaaaaag tcgctgaaac attatcagga
    13921 actgtcacac ctcaagggat atttgcaatc attgaaaagc cgcaagttga tgtcactgca
    13981 gcaaaacaag tgttaatttt agatcgtatt caagacccag gtaacctcgg cacgatgatt
    14041 cgtacggctg atgcagcagg gttagactta atagtgatga cgaaaggaac tgctgatgtc
    14101 taccaagata aagtattacg tgctagtcaa ggtagcgtct ttcacattcc aattcaatat
    14161 gtagatgaca tgtcagcttg gatgtcatcg tttaaaggac caatatatgg gactgcgctc
    14221 caagatgcaa cgacgtatca tcaagtcgct agccaacaag atacatttgc actcatcctc
    14281 ggcaatgaag gggaaggtgt cgcgatggat ttattagcgc atacgacaca aaacttgatt
    14341 attccaattt atggacaagc tgagagttta aatgttgccg tcgctgcagg gattttaatg
    14401 ttttatttaa agggttagac tttgggttga cccttgatga acgcatgtat ataatagacg
    14461 tattaacaat tcaacaaact gctgataaaa agacgtaaac tattatcggg attgttcagg
    14521 gaggtctggc ataaactgtg agttggactc aatctacata gtttttttca cctttttagc
    14581 tacttaaaga gatttaagtc ggaagtaaaa tccgttatca atatgaattc agagtgtatg
    14641 tgtcttggat acataaaact gggtggtacc acggaagaga tttcgtccca atagtgcggg
    14701 cggagtcttt tttatttgtg tgcgctgtga ttgagggcaa aagacatatc cgacaattga
    14761 caaaaatgaa gtgcgataaa gaggtttcag tatgaatggc gttaaagaat taaaggagga
    14821 atgacaatgg tgcagaatga agcaatgatt caaatcaaaa atgaagcaat gactgatatt
    14881 gaacaagcac aagatgaaaa agcgttacaa gatgttaagg tcaaatattt aggtaaaaaa
    14941 ggtcaagtga caggtctgat gaaacaaatg aaagacttgc cgaaagaaga cagacctgca
    15001 tatggccaaa gagtcaatga agtgcgtcaa gcgattgaag gggcggttgc tgaacgtcaa
    15061 acgctacttg ctgaagcaca attaaatcaa caattagcag aagagtcgat cgatgtgaca
    15121 ttaccagggc gtacagtcgc aacgggagca caacatcctt taacacgtac agttgaagaa
    15181 attgaagact tatttttagg tttaggttat gaaattgtaa caggatttga agtggaacaa
    15241 gattactaca acttcgaagc actcaactta ccgaaatcac atccagcgcg cgatatgcag
    15301 gacagttttt acattactga agaagtattg ttacgtactc atacgtcacc cgtacaagcg
    15361 cgtacaatgg agcaacgtaa tggtcaaggc ccagtgaaaa tcatttgccc gggtaaagta
    15421 tatcgacgtg actctgacga cgcgacacat agtcatcaat ttacacaaat cgaagggctc
    15481 gtggtcgacg aaaacattaa aatgagtgat ttaaaaggaa cactcgaatt attagcgaaa
    15541 tcactgtttg gtgcagatcg tgaaattcgt ttacgtccaa gttatttccc atttactgaa
    15601 ccgtctgtgg aagttgacgt gtcatgtttt aaatgtaagg gtaaaggctg taacgtgtgt
    15661 aaacatactg gctggattga aattttagga gcaggtatgg tacatccgaa cgtacttgaa
    15721 atggcaggct ttgattcgaa aaaatattca ggttttgcgt ttggaatggg gcctgatcgt
    15781 atcgcgatgt tgaagtatgg tattgaagat atccgtcatt tctatacgaa cgatatccgt
    15841 ttcttaaatc aatttaaagc agtagaagat agaggtgaac aacatgttaa tatctaaaga
    15901 atggttagaa acatatgttg atttagatgt ttcaattgag gcgttggcgg aacgtattac
    15961 gcgtacagga attgaagttg atgatattca agactttacg aaagagatta aaaatttagt
    16021 ggtcggttat gttgaagaaa ttgcacaaca tccagatgca gataaactta acatttgcca
    16081 agtgaatatc ggtgaagaga cccctgtaca aattgtttgt ggtgcgccga acgtaggtgc
    16141 aggtcaaaca gtcatcgtcg caaaagtagg cggtcgttta ccaggcggta ttaaaattaa
    16201 acgtgctaaa ttacgtggcc aagtatctga aggtatgatt tgttcgcttc aagaaatcgg
    16261 tctgccaagc aatgttgtac cgaaaaagtt tgaagatggc atttatcaat ttgcgactgc
    16321 tattgaacca ggcacagatg cattaaaagc gttatattta gatgatcaaa tgatggaatt
    16381 tgatttaaca ccgaaccgtt ctgatgcatt aagtatgatt ggaacagctt acgaggcagc
    16441 tgccttgtac gataagcaag ttcgcaaacc agaaacaaca gtgacagcac agccgaaagc
    16501 agcgcatgaa accttgacgg tcaaagttga agatacgaca caagttccat actacagtgc
    16561 acgcgtcgtt gaaaatgtcc aaatcgcacc gtcacccgaa tggatgcaag cgcgtttaat
    16621 gaaggcaggc attcgtccaa ttaataacgt tgtcgatatt tcaaactatg tcatgttaga
    16681 atacggtcaa ccattgcaca tgtttgacaa agatcacatt gggtcaaacg atattgtcgt
    16741 tcgactcgct catgaaaatg aaaaaatgac aactttagat gatcaagaac gcgaattatt
    16801 atcaagcgat atcgtcatta ccaatggtca acaaccgatt gcacttggtg gtgtgatggg
    16861 tggcgatttc tctgaagtaa caccagaaac taaaaatgtt atcgttgaag gggcgatttt
    16921 caacccagtt gcgattcgtc atacatcacg tcgtttaaac ttacgtagcg aatcatcaag
    16981 tcgtttcgaa aaaggcattg cgactgaatt tttagatgaa gctgttgatc gtgcatgttt
    17041 cttacttgaa acattggcac aaggtcaagt gttagacggc cgtgtgacag acggtgattt
    17101 aggtgcatta gtcacagata ttacgattac agcagataaa gtaaatcgta cagtcggctt
    17161 tgatttgaca gaagcggata tcgtgcgtgt atttgaacaa cttggcttta acactgaaat
    17221 tacgaataac gacattcatg taaaagtccc atcgcgtcgt cgcgatatta cgattgaagc
    17281 ggatctaatt gaagaaatcg cacgtattta cggttacgat aacattccat cgacgttacc
    17341 agtatttgaa gatgtaacaa gtggtgcact gactgaccgt caacgtaaaa cacgtgtcgt
    17401 gaaacgtaca ttagaaggtg cgggtctatc acaagcgatt acgtattcat tagtggatcg
    17461 tgaacgtgca accgcattta caacaacaac gcatcaaacg gttgaactgt tgatgccgat
    17521 gagtgaggcc cattcaacat tacgtcaaag cttaattcca catttaattg acgcaacgca
    17581 atataacgtt gcgcgtaaaa atcaagatat tgcactttat gaaataggaa atgtcttttt
    17641 cggtcaagaa ggccaaacat taccagaaca agtggaatat ttaagtggga ttatgacagg
    17701 tgaatatgta tctaatccat ggcaaggtaa aaaagaagtg gttgattttt atcttgtgaa
    17761 aggtattgtc gaacgtattg ctgaccaact cgcattacgt tttgaatatg aaacaaccca
    17821 aatcgatggt cttcacccag gtcgtactgc agcagtgacg ttaaatggtg aagcgattgg
    17881 ttttatcggg gaattacatc caactgtagc gaaaacatat gatttaggcc gtacgtatgt
    17941 ttttgaactc aattacgaaa aaatcatgca acagtcagtc ggttatatta actatcaacc
    18001 gattccgaaa tttccgggcg tgacacgtga cattgcactt gttgtagcgt cagaagtacg
    18061 tgccgcaagc cttgttcata cgattcatca aaatggtggt gcaattttaa aagatgcccg
    18121 tgtatttgat gtttatgaag gtgaacatat ggaagcaggc aaaaaatcag tagccattcg
    18181 tttaacttac ttagatgaaa ataatacatt aacagaagaa caagtgacaa aagttcatca
    18241 agcgattctt gcagtgttag aagcacaagg tgcaacatta cgtggataaa aaacgataac
    18301 agggaacacc aagtaacgat tgaagttact tggtgttttt tgagttgtct cgttatatcg
    18361 aaaattgatg tatttcaaat gataacctta actgtacatg tcatgattga caacagcgac
    18421 cacattccac tggctgatat cgaaataatg cctttgctgt ttcattcgct tcatctaaat
    18481 ttaatatttg ataaggtccc gtatattgaa cttgtttaag atattctagg gcattttgct
    18541 cgcttgtaaa aaagtgaata taaggacaac agtcaacatt gcaattttct ttttttagca
    18601 catctttgta taaaacaaaa atgtcgtgtt catttcgatt gatgatatgt ccgtctttca
    18661 tttcaaagtg gatgggtgtg tgcatcaact cgtcttcact ctcaatcgtg atattcgaat
    18721 gaatcgtata atgcacacct atcgcatcaa tcgcacacat tgcaaatact ggcgacgtat
    18781 tttgatttgt gtatactttt ttattcgttg ctttaagtga aatcggataa atagaaatca
    18841 attcaccatt ttcggcaacc acaacatttt tgttgatgag tgtttgatat tcaggcttta
    18901 ctttaagtgg tgtttctggg ttgtcgcaaa tatagtgaat catctcaagt cttaagtcat
    18961 tctctgcttc agttaaaccc tgggtaaaat tcaagtcaat ccctcaaatc gtaattattt
    19021 cgatttatta tatatggaaa cacactttga agtaaaatat aaacgtccaa acgagcaaag
    19081 aaagtataaa ttttgatacg caaaaagcag aaatgaataa aattgaaaaa tcgtctatca
    19141 aaacgtaaaa gtgaatcaat gatcatagta ttcgaaagca aaccagatac acagtgaatc
    19201 aaagaggtaa gtattaaagt catcaacatg tcgcaaaaac agaaaagcac cgacaaatat
    19261 aaacatgact caaaaatcaa gaaggtgtag aaggcacgga tcatatacaa taaaagagag
    19321 ggtatctgca atagaaaaag tagtgtaggt tgagaaaaat agtaaccgaa agaaaaccag
    19381 atgcacactg aatcaaaggg gtaaggatta gagttatcca catgtcgaaa aaacagaaaa
    19441 gtaccaaaga ttgcaagaat cgcgcaagac tcctgagggg acgcgtgcat actgctagca
    19501 gtcacttctt tactttaaaa gtggctaccg tttaacgtag tagctgtctg acttctcaat
    19561 gcgcatgctt ttgagaagtc tagtcagcct tgcgggggca gtacaacgaa atcttagtta
    19621 cacatgagat ttctgtactg ctcccaaaat ccaattcggc ctcgaacaag tatctatttt
    19681 aattaagccg aattgagttg aagggccagc ccctaggaaa gcgcagcgcg attcaaacag
    19741 tctaaggttg caacgcctac tgtcaacaaa tgttcataac cacaattaac gctttgaatt
    19801 caccagtgcc aacgctttat ttcgattact aaaatgactt ttactcattc catcaagcac
    19861 ctcaagccca tacttctcaa tcacctttgc cgcagtcaca tccaccttat gactcgcccc
    19921 tttcaaaatt tccatacggt aacgcttcga caactgatcc atatgtttca caaacgcata
    19981 ccgtgaaatg atactcgccg ccgcaatcgc caaagatttc gactcaccct tcgtctcaaa
    20041 ttgcgttttc tgacgttctg gaatcgcacc tagcgcataa tgttcataaa cctcttgttt
    20101 cgcaaactga tcaataacaa tataatccac ttcagttgca tccacttttt tcaatacatt
    20161 tttaatacat tcattatgta aaacagcctt cattttaact tgtgaccagc ctagttgttt
    20221 gcgttcatta tatttcgggt tatccaatac gagtaaagaa tgaggtaaaa atgtaacgag
    20281 ttgctcagct aaggcaacaa tttttttatc agttaaacgt ttggaatcat ctacacctaa
    20341 ttctttcaat ataggaatat gctgtgcaga aacgtaacac gcacatactg ttaatggtcc
    20401 gaaataatca ccgctacctg cctcatcact gccgatacaa ctatgtgcat tgtaacgaat
    20461 atactgtgtc gatgtgacgg gtttcttttt cgatttcgac ttcgcagggg acttcctttc
    20521 agagtggtca atcagtttac gccataacgc ttctgcattt ttaccttgaa acatgacttt
    20581 ttgtgaattg taaatactga tcgtgacccc ttcatatttc gcccgtgcgc gcatgccagt
    20641 agggagatct tgcgtgtcgg gatgaaggtg ctttaaaagt tgttcaattt cgtttgcatt
    20701 taacttttta acaatatttg tcatccaata ccctctcttc tatttttact ttaaaatggt
    20761 aacatagaat cgataagacg ggaacaatga atgatacaca aataagccta actcgtgtat
    20821 aatgtaccat gatcaaacaa aaagataata aggctaggtg agtgaaatgg gtgagtttaa
    20881 aaaccgaatc aatgtaacga ttaatgatca aaactatacg attttagggg aagatgaccc
    20941 tgaacgcatt cgttatgtcg ctgacttagt cgatggtaaa attcgagagt tgggacgtag
    21001 aaacgcagga ctggattctg tgcgcaaagc tgtactaact gcggtcaatg tgatgcatga
    21061 actcgtgtta ttagaagaag agaatgcact gttacgagaa gaaattcaac gtttaaaaca
    21121 tagaggacac taatgtgtat ctactattta ttatcattgt cttactgctt tttgcaatga
    21181 caggatttca tagaggttgg aatgtcagtg cgttgcattt gggaagtaca tttttttctt
    21241 tgtgggttgc agctcaattt tatcaaccac tcagtcatta ttttaggttg tttattcctt
    21301 atccacgaac tgtcgcatac gatacccaat ttgctatgga tattgcgcaa ccagaagtgc
    21361 gattcaatta tgtcatcgta ttcctgttgc tcgtgatgat tgtaaaaacg atgctgtatt
    21421 ttgtgattgg cagctttaat ggtgtgtttg cattgcaacg cctcggatgg tccagtagaa
    21481 ttataggcgc atgtctcgct tgttgttcgg gcatcatttt tatccatttt acttgttatg
    21541 tcacagcatt gtatccgaat gagatgatgc aatatgcact tgcacaatca caagtggctc
    21601 aatggtttat taatggcatt ccatttttat cagaatttac attgaatttg aaataaaaca
    21661 gacgaatgag gctgagacgg atatgtgttg tcacatggtt tcaccctctt ttttaatgag
    21721 gtgatgagat gactaagaaa gatgttattc gtttattaga agaaatcgcg acttatatgg
    21781 agttaaaggg agaaaatgcg ttcaaagtct ctgcatatcg taaagctgtc caaagtttag
    21841 aagcagatga acgcacaatg gatcaaattg atgatgtaac agaattaaaa aatattggta
    21901 aaggtgtagg cgaagtcatt aacacatttt tagaaacagg tgactcacct acactgaatg
    21961 ctttaaaaaa agaagtgcca agtggattaa ttccattatt gaaaattaaa gggctcggca
    22021 gtaaacggat tgcacgactc tatcaagaac tcaatattac ggataaagat tcatttcaaa
    22081 aagcggctga aaaccatgaa ataagtgcat tagacggctt tggtaagaag actgaagaaa
    22141 aatatttaga agccattcgt gagttaggtg cgaaaaaaga tgcgtaccca atcgacacga
    22201 tgaaaggatt aaacacgctg attacaaaac atctacagtc gatagaagcg attgaacgtt
    22261 ttgaagtggc aggcagtttt cgtcgtaaga aagaaatgag taaagattta gactatatta
    22321 ttagtacaaa tgatccgctt gaagttcaac aacaattgtt agcgatacct gaaaaagtgg
    22381 aagaggttgc tgtaggaaaa acgaaagtat ctctggaact ggcttttgat gatgaaacaa
    22441 ttggtgtgga ctttcgccta attgaacctg ctgcattcta tcatacgttg caacatttta
    22501 caggttctaa agagcataat attcgaatac gtcaaattgc gaaacaaacg aacgaaaaag
    22561 taagtgaata cggcatcgaa caaccggatg gctctttgtt acaattcgat agtgaagcgg
    22621 cgatttatga acattttggt gtgaaatgga tggcgccaag tatgcgcgaa gatggtacag
    22681 aatttgataa agatttatca gaaattgtca cactcgatga tattaatggg gatattcata
    22741 tgcatacgac tgcgagtgat ggtgcgtttt cattaagaga aatggtagaa gcaaatatcg
    22801 aaaaaggcta ccaattcatg tgtattacag accattcaca aagcttacgt gtggcgaatg
    22861 gtttgtctgt ggaccgttta ttgaaacaaa atgaagagat taaaaaatta aaccaagcgt
    22921 acccagaaat tgatatttat tcaggtacgg aaatggatat tttgcctgat ggtcgattag
    22981 attacgatga tgaagtgctc gctcaactcg attatgtcat tgcggcgatt catcaaagtt
    23041 tcaatcaatc ggaagaagag attatgaagc gattagaagc cgcatgtcgc aatccttatg
    23101 tacgtcatat tgcacatccg actggtcgaa ttattgggcg tcgtgatggt tatgcgccga
    23161 atatgacgaa gttgattgag ctctgtcgcg aaacagggac cgtgcttgaa atcaatgcga
    23221 acccgaaacg tttagattta agtgcggaag tgttacgaca aaatccaggt ttgaaagtaa
    23281 cgattaatac agatgcgcac catgtcgacc atctcaactt tatgaattat ggtatcgcta
    23341 cagcacaaaa aggcttcgtc aaaaaagagg acgtggtgaa tgcgatgtct cgacaagcat
    23401 ttaaacaatt tattacgcaa cccaaatctg ttgaatagaa attgagggat tggatgaaac
    23461 aaaaaacgtt agaaatattg gaatttaata aagtgaagtc attgattgag caagaggtca
    23521 tcagtgattt agcgattgaa aaagtaaaac aattagcgcc atcgtctgat tatgagacgg
    23581 tcgtccatca aatggatgaa gtggacgaaa tttcacgaat ctataatcaa taccgtttgc
    23641 caagtatgag cggtttgtca cgcgtgcaac cgtatattaa gcgttcgcaa attggtggga
    23701 cattgaatgt gcaagaactg aatgcgatta aaacgttaat tcaagttcaa aaccagttta
    23761 aaacatttta taaccaactt gttgaagatg aagaaacggt caattatgag attttagatg
    23821 ggcagatgca gcaattacct gtattaacgc atttatacca atcgattcat caaaaatgtg
    23881 atacgcaaga cttattcgat tctgcaagta tggagttaca ggcgattcgg agtcggattg
    23941 ctaaaacgaa tcaacgtgtt cgtgcacaat tagatcgtat ggtgaagtcg acaagtaatc
    24001 agaaaaagtt atccgatgcc attgtgacag tgagaaatga gcgcaatgta attcctgtac
    24061 gtgcagaata tcgccaagat tttaacggga ttgtgcatga tcaatctgct tcaggtcaaa
    24121 cactttatat cgaaccttct gcagtcgtcg agttgaacaa tcaaattagt cgtttacgca
    24181 gtgaggaagc aacggaagtt caacgcatac ttgctgagtt aacggccgaa gtagcagaag
    24241 aagcagaagc atgtttgatt tctgaacaag tgatggggca tttagatttt ctgattggta
    24301 aagcgcgtta tgctgctaaa attaaaggga cgaagccgac atttgcagta gagcgccaag
    24361 tgtatttacc gaaagcattt cacccgttgt tggaccgaga cacagttgta gcgaatacga
    24421 ttgaatttga gtcttctatt caaactgtta ttattaccgg tccgaataca ggtggtaaaa
    24481 cagtcacatt aaaaacatta ggcttaatta ttctaatggc acagtctggt ttgttaattc
    24541 caacactaga tggcagccag ttgagcgtgt ttgacaacgt cttttgtgac attggcgatg
    24601 aacagtcgat tgaacaatca ttgtctacat tttcgtctca tatgaaaacg attgtaaata
    24661 ttttagaaga agccaatgat aagagcttga ttttatttga tgagcttggt gctgggactg
    24721 atccaagtga aggtgcggcc cttgcgatga gcattttaga tcacgtgcac ggtatgggcg
    24781 cgcttgttat ggccacgacg cactatcctg aattgaaagc atacagttac aatcgtgaag
    24841 gtgtcatgaa tgcaagtgtg gaatttgatg tggatacgtt aagcccgact tacaagcttt
    24901 taatgggtgt gccaggacgt tcaaatgcgt ttgatatttc gaaacgttta ggtctcggct
    24961 tgaaaatcat taatcatgcg aaatctatga tcggtcaaga tgaacaagaa attaatgaaa
    25021 tgattgcgtc actcgaaaaa aatgcgaaac gtgtggatga tcagcgtatt gaacttgatc
    25081 gactggtccg tgaagcttca caaattcata acgacttatc acgtgcatat gaacaatatc
    25141 aaaacatgga atcccgttta attgaagaag caaaagataa ggcgaatcag cgtgtcaaag
    25201 cagcgatgga agaagcggat gatattttga aatcattacg tgatatgcgc gatcaaaaag
    25261 gtgcagaagt gaaagaacat gagctcattg atcaacgtaa acgcctagaa gatcaatatg
    25321 aagcgaaatc cattaaacaa aatgtgcaaa agcaaaaatg ggatgaaatt aaagcaggcg
    25381 acgaagtcaa ggtgctttct tacggtcaaa aaggagaagt gcttgaagta ttgagtgatg
    25441 aagaagcggt cgttcaaatg ggcattatta aaatgaaatt accattaagt gaccttgaga
    25501 aaaaagaaaa ggctaaagag caaccgaaaa aagtggtcac acgtacgaat cgttctactg
    25561 taaaaatgga actggattta agaggctatc gttatgatga agcgatggtg gcacttgatc
    25621 agtatctcga tcaagctgtg ctcagtaatt atgaagatgt ttacattatt catggtaaag
    25681 ggacgggagc attacaaaaa ggcgtgcaac aacatttgaa acgtcataaa agtgtggcta
    25741 cgtacagagg cggcatgcca agtgaaggtg gatttggtgt tacagtcgca acattgaaat
    25801 aattgagcaa tgataatgaa atcatgcata caatttgtta taattttaac atcaaacgat
    25861 atttaaggag gaaacttcct atggcaataa tagaagtgaa agattccaat tttgacgaac
    25921 aaattcaatc aggtgttaag ttagtagact tttgggcaac ttggtgtggc ccatgtaaaa
    25981 tgattgcacc tgtattagaa gacttagcag ttgactacga aggtaaagct gacattttaa
    26041 aattagatgt tgaccaaaac caagcaacag cagcaaaatt tgaagtaatg agtattccaa
    26101 cattaatcgt atttaaagac ggtcaacccg tggacaaagt tgttggattc caaccaaaag
    26161 aaaacttagc acaagtatta gataaacacg tataatctca tattcacttt tataaaaata
    26221 aatgaattta aatagttaga gtatcaaatt acagttattt tattaaatgg aaagcgcagt
    26281 cggtgataag tgactccgcg tgcttgttaa atatgaagtg aatcaccgtt gtgggagtga
    26341 aacagtcatt gaagtattgc gatgatgttc gtttcactcc ttttcgttgt ttataatgat
    26401 gatggtgtta tttgaaaatg agcttgttta aggtaggaga tgtaaagaag gtgaatgatg
    26461 catggaggag acccaaagtc gaattaaaca aaagttaggt gtgttaccaa tggagccggg
    26521 ctgctattta atgaaagacc ggcaaaacca agtcatctat gttggcaaag cgaaaaagct
    26581 acgcaatcgt gtgcgttctt attttacagg tgcacatgat acaaagacga cacgtttagt
    26641 tcgagagatt gttgattttg aatatatcgt cacttcaagt gaaacggaat cattgttgct
    26701 tgagctgaat ttaattaaaa aatatcaacc gcgctataat attttactta aagatgacaa
    26761 aagttatccg tttataaaaa tcacgaaaga acgtcatcca aaattgattg tgacgcgaac
    26821 agtgcgtaaa ggaagcggaa aatattttgg tccttatccg aatgcctact ctgcacatga
    26881 aacgaaaaag ttattagatc ggatttatcc atttcgaaaa tgtgataaaa tgccggaccg
    26941 tttatgcttg tattatcata ttgggcaatg tttaggacca tgtgtttatc ccgttcagca
    27001 agaggaatat ggacgcatga cgaaagaaat tactgatttt ttgaatggtg aagacaaaac
    27061 gattttaaaa aatttagaag aaaaaatgat taaggcgagt gaaaatctag agtttgaaca
    27121 agcgaaagag tatcgcgatt taattcaaca cgtgaataat ttgacgaaaa aacaaaaaat
    27181 tatgtctgtc gatcaaacgg tgcgagatgt atttggttat cacgtcgata aaggttggat
    27241 gtgtattcaa gtattcttta ttcgacaagg gaatttgatt gaacgtgaag caacaatgtt
    27301 tccgttacaa caaacgcctg aagaagagtt ttatactttt atcggacaat tttatcagct
    27361 aaatcaacat tttctaccta aagaagtgca tattccgaaa cagctagatg tagaaatggt
    27421 gcatactgtt gtggatacaa acatcgtcac accgcaacgt ggacagaaaa agcaattggt
    27481 cgatatggcc aataaaaatg cacgtatatc attagagaat aaatttgaac tgattgcgcg
    27541 tgatgaatcc cgtacggtaa aagcaattga acaacttgct gatgcgatgg gaatacagat
    27601 accgattcgt attgaagcct tcgataactc caatatccaa ggtgtggatc cggtttcagc
    27661 aatggttagc tttgtggacg ggaaaccaga taaaaaaggg tatcgtaaat ataagattaa
    27721 atctgttgaa ggaccagatg attataaatc aatgcaagaa gccgtacgtc gccggtacac
    27781 acgtgtgttg aatgaagggt taccgttgcc agacttaatc atcgttgacg gtgggaaagg
    27841 tcatatgtcg agtgtggcag atgtccttga aaatgaactt ggtctagaca ttccaattgc
    27901 aggacttgca aaaaatgata aacaccaaac ttcagaattg ttatatggag aaactgcgca
    27961 agtcgtccca ttaaagaaaa atagtcaagc gttctattta ttacaacgca ttcaagatga
    28021 agtgcaccga ttcgcgatta cttttcatcg tcaaacacga caaaagacgg gattgcgttc
    28081 gattttggat caagttgaag gcatcgggcc aaagcggaaa acaaaattat tgcgtacatt
    28141 tggttcaata aaaaaaatgc gcgaagcatc tgtagagaca ctacaagaag cgggattgcc
    28201 gaaaaaaacg gcggaggtcc tttttaaagc attacaagag gaaggctaga taaatttggt
    28261 atgagaatca ttctcatacc caaatttgtc acaattaatg ttacaataat agagagttga
    28321 tttctttttt ttatatgata tgcaaacgtt ttctcgatag tcaattacaa aaagaaatca
    28381 aaaaattaat agtatcgcag gggggacttc ctttggcaca ttcaaagaac caattctacc
    28441 ttagacgttt acattcttta cttggtgtca ttccgttagg tggcttttta ctcgttcact
    28501 tattggttaa ccatcaagca actcaagggg tggaagcatt taataaggcg gcaagcatga
    28561 tggagtcgct accattttta tatgctttag agattatcat gatttatatt ccaattttgt
    28621 atcatgcagt ctatggcgta catatcgcgt ttacagcgag ccacaacatc gggcatcatt
    28681 cgtatatgcg aaattggatg ttcttgtttc aacgtatttc gggcatttta acgtttattt
    28741 tcgtaatgat tcacatgtgg caaacacgta ttcaaaagtt ttttggtcaa gaagtgaact
    28801 acgatatggt acatgatatc gtatcgaatc cgatttggtt agtgttctac atcatatgta
    28861 tcattgcggt cgtattccat ttctctaatg gtttatggtc atttttagta acttggggca
    28921 ttttgcaatc accaaaatca caaaaggtat tcacttgggt atcccttgtc atcttccttg
    28981 tgatttctta tatcggtgta agtgcaattt tagctttcgt ataaacgttt aatcatttca
    29041 ggggagtgac aattctatgg cagagaagaa aattattgtt gtcggaggcg gtcttgccgg
    29101 tttaatgtca acaattaaag cagcggagca aggggcacat gttgatttgt tctcaattgt
    29161 tccagtaaaa cgctctcact cagtatgtgc acagggcggt attaacggag cggtaaatac
    29221 aaaaggtgaa ggtgactctc cgtgggttca ttttgatgac actgtttacg gtggggactt
    29281 cttagcggat caaccgcctg ttaaagcaat gactgaagca gcaccacaaa tcatccattt
    29341 attagaccgc atgggtgtca tgtttaaccg tacagctgaa ggacttatcg atttccgtcg
    29401 tttcggtgga acattacatc acagaactgc attcgctggt gcgacaacag gtcaacaatt
    29461 attatatgca ttagatgaac aagtgcgtag ttatgaagtg gatggacttg tgacgaaata
    29521 tgaaggatgg gaatttttag gtatcgttaa agatgatgaa aatgcggcgc gtggtattgt
    29581 tgcgcaaaac atcacaactt ctgaaattca atctttcggt tctgatgcag tgattatggc
    29641 aactggtggt ccaggtatta tttttggtaa aacgacaaac tctatgatca atacaggatc
    29701 agctgcgtct atcgtatatc aacaaggggt aaaatatggt aacggtgagt ttatccaaat
    29761 tcacccaaca gcaattcctg gtgacgataa attacgttta atgagtgaat cagcacgtgg
    29821 tgaaggtggc cgtatttgga cgtataaaga cggtaagcct tggtatttct tagaagagaa
    29881 gtatcctgat tatggtaacc tcgttcctcg tgatattgcg acacgagaaa ttttcgatgt
    29941 ttgtgtgaat caaaagctcg gtattaacgg tgaaaacatg gtataccttg acttatcaca
    30001 caaagatcca catgaattag atgtaaaatt agggggtatc atcgaaattt acgaaaaatt
    30061 cacaggtgac gatccacgta aagtaccaat gaaaatcttc ccagcagtac actactcaat
    30121 gggtggtctt tatgtagatt atgatcaaat gacgaacatt gatggtttat ttgcggcagg
    30181 ggaatgtgat ttctcacaac atgggggtaa ccgtttaggt gccaactcat tattatcagc
    30241 tatttatggt ggtactgttg caggacctaa tgctgtgaaa tatgtagaaa acattgaaaa
    30301 atcttacgtt gacatggatg atagcatgta tcaaaaacgt gtggatgaag aacaagcacg
    30361 ttttgacaag ttgttaaaca tgaaaggttc tgaaaatgca tataaattgc atcgtgaact
    30421 tggtgaaatt atgactgcga atgtgacggt tgttcgtcat aatgacaaat tgttagaaac
    30481 tgacaagaaa attgttgaat tgatgaaacg ttaccaagat attgatatgg aagatacatc
    30541 gcaatggagt aaccaagctg tattcttcac acgtcaattg tggaacatgc ttgtgttggc
    30601 gcgcgtaatc acaatcggtg cttataatcg taatgaatct cgtggtgcgc actataagcc
    30661 ggaattccca gaaagaaatg acgatgagtg gttaaaacac acattagctg aatataaagg
    30721 gccagatgca ccaccagcat ttacgtacaa acctgttgat gtcagcttaa tcccacctcg
    30781 taaacgtgac tacacaagta agtcaaaagg gggtaaaaaa taatggcaga aacacaagag
    30841 aaacaacaaa catcacaaca agttcaaaat agcacttcaa ataaaacaat taagttaatt
    30901 attaaacgac aaaaggatca aaattcatca ccatatgaag aatcttttga aattccttat
    30961 cgtgaaaata tgaatgtcat cgcagcatta atggaaattc gtcgtaaccc aatcaataca
    31021 aaaggtgaaa aaacaacacc ggtaacatgg gatatgaact gtttagaaga ggtctgtggt
    31081 gcatgttcaa tggtcattaa tggtaaagcc cgtcaatcat gttcagcgat tatcgatcaa
    31141 ttagaacaac cgattcgtct tgaaccgatg acgacattcc cagtcattcg cgacttacaa
    31201 gtagatcgta cgcgtatgtt tgacaacttg aaacgtatga aagcatgggt gccgattgat
    31261 ggtacgtatg acttaggtcc tggtccacgt atgccagaaa aaaaacgtca aacagcttac
    31321 gaattatcaa aatgtatgac atgtggggta tgtttagaag tatgtccaaa cgtcacaaaa
    31381 accaatagtt tcgtcggtgc tcaagccatt tctcaagtgc gtttgtttaa cttacatccg
    31441 actggtgcaa tgacaaaaga cgaacgttta gatgcgttaa tggatcaagg tggtttacaa
    31501 gcttgtggta actcacaaaa ttgtgtgcaa gcttgtccga aaggtattcc gttgacaact
    31561 tctattgcag cgatgaaccg tgaaacatca ttccatatgt tcaaatcatt ctttggttct
    31621 gatcatgaag tagaataagt atattaaaat ggcgcatgtt cttaatagag catgcgttat
    31681 ttttatgaaa aaagtcaatt tcgtatgcaa gtgtgtaaaa gaagagtcaa tcatatatca
    31741 atatatatcc tattatgagt gtaatgaata tcaataaata tttaaaatgg tatctttcag
    31801 tgtagtttta cggaatgtca gattgttcaa cttcatatta gatgtgataa aataaaaagc
    31861 aataatgaac acgaatagga tgaaagagat ggatagacca attggagtta tggattcagg
    31921 ggtcggggga ctcacagtag caaaagaaat tatgagacaa ctccccaatg aaaccattta
    31981 ttatttaggg gatgtcgctc gttgcccata cggtcctcga gatcaagagg aagttaaaaa
    32041 atttacaatc gaaatggcca attatttagt acagtatgat ataaaaatgc ttgtcatcgc
    32101 atgtaatacg gcaacagctg ttgcattgga gcccttacaa gaacagttga aaattccagt
    32161 tatcggcgtt attgaacccg gtgcgagaac agcaattatg acgactaaaa atcaaaatgt
    32221 cctcgtactt ggtacagaag gaacgattaa atcagaagct tatcgtacgc atattaaaaa
    32281 aattaacccg catgtcgatg tatacggtgt ggcatgtcca gggtttgtac cattagtaga
    32341 agagatgaag tacaaagacc cgacgattac aaatatcgta attcaccaaa cattgaaaag
    32401 ttggcgtcaa acagaagcag atacggtcat tttaggatgt acacattatc cgttactcta
    32461 tcaaccgata tttgattact ttggaaagac gaaaaccgtt atttcatcag ggttagaaac
    32521 agcgagagag gtcagtgcac tccttacatt tagtcatgaa catgcgcact acacgcctca
    32581 gccaaaacat cgcttttttg cgaacggtga agtacgtcat atgacttata ttattcaaga
    32641 gtggctcaaa atagacgctg aagttgaaag aattcagcta ggataggaga ggtagatatg
    32701 gcagatatcg tcattgcatc atcaaatcaa gggaaaatta atgattttaa agtcattttt
    32761 tctgaagaca atgtcattgg aatcaacgag atgattgaag attttgatgt tgaagaaaca
    32821 ggcacgacat ttgaagaaaa tgcccgcttg aaatcagagg cagccgcaaa gttactgaat
    32881 gcaacggtga ttgctgatga tagtggctta gaagttgctg cattgaacgg cgaacccggc
    32941 gtctattcag cacgttatgc aggggtacaa aaaagtgacg aagcgaatat tgaaaaagtg
    33001 cttaaaggat tagaaaatga agagaaccgt gcagcccgtt ttgtttgtgt gattagtatg
    33061 acgacagcaa ctggagaaac aacaacgttt aaaggcacgg ttgaaggaga aatcacgtta
    33121 agtcaaattg gtgaaaatgg ttttggatat gatccgattt tcttaattcc tgaacgccaa
    33181 aaaacaatgg cccaactgac tgccgaagaa aaatcagaaa tcagtcatcg tcgtaaagcc
    33241 attgaccaat taaaagcata tattgagggt gaggagaaat gaaaaagctt atcatcctga
    33301 gtgacaatca ttcagaaaca ggtattttat atgatgtgta ccaacaacat gaagacgcag
    33361 atgcattttt tcatttaggt gattcagaat ttaaatatga tgacacagag ttaagtctat
    33421 tccatcgtgt gaaagggaat atggactttt atcctgaatt tcctgacaat caagtcacat
    33481 cggttggtag tcatcgtata tttttcacgc atggacacct ctatagcgtt aacagttcac
    33541 gtcaacaact tgcacaagcc gcaattgcac atgaagcaat cattgccttg tatggtcaca
    33601 cgcatgtcgc aaaatatgaa caaattcatg gtgtacatgt gatcaatccg ggaagtattt
    33661 cacaatcacg gagcgatatt gaagaaacgt atgctgaaat tatactagag ggtacagaca
    33721 gttttgtgaa tttccgcaat cgtcaccatg acatcatcga taaagtgaca tttcaaatag
    33781 aggaataaat tattgagcag tacagttttg ggattcagac ctatcactgt attgcttttt
    33841 aattgatgaa aacaaagcca ccctactaac gattcatatg aaatgaaacg tagtagggtg
    33901 acgttagagg tgagaatcgg aatgaagata tgtatctcca ttagtatgat tcagcctcaa
    33961 actcagtcaa acgatgtctt atttgttacc gaataaacct ttcaagaatt cgataacttt
    34021 tttgattaag tcgatgataa acatgtcgat tcacctccta atgtttgatt aatgtcatta
    34081 taaatcacgt aaggcattaa tttttgaaaa gtcctcaagt tgtttaaatt cattcgcaac
    34141 tgtttaaata atgaaaagta cagacagttg tgcatgccga aatgtccgaa aaatgaaagg
    34201 cttccgttta ttttagtgtt gctaccatga tgaagacgtt gaatatcaat aaggattcga
    34261 aaaatttttg gaaaatggat gattaaatgg cttcaatgat ccttttagcg gatttaattt
    34321 taaaagtcgc aatatcgaga aaatagagac gtgttaagat tttattttct tcttaccatt
    34381 actgacacgc ctatcaactg atttctttga tgatgcataa agttcttcat caatttactg
    34441 tgtccgtttc ttagtctagc atcaattcac ctcatttttc tgaacttctc tcgatgtaag
    34501 atgtaatcaa atgctcaacc atgttcgaca tacttctgtt ttttagcgag ttccttcaac
    34561 ttgtctcaat tatcttttga aactataacg ctaattctcg tgttagtaat ctttatcatt
    34621 tttatgacct cacaaataat gtagcacagt gactacactt ttaaaaaaat agaaattagt
    34681 gcttgtatag tacatcgtac cgcaagtggg tgatgtggca gtatatagag acggtattta
    34741 taaacaatac ggcccgtact gtttacaatg gtggtaatac gaatcagttt ttaattttag
    34801 agcaaaattt tgatggcaat gcaaacatga ccgcaacatt aagatgaaca attactatgg
    34861 aggtacgcat tttatccgcc ctcattacaa aagcgagaat accacttcta aaatcgctaa
    34921 taaaatcact ccaccatcac atagtgctgc aagtaactca gctagtaaga ttaccagtgg
    34981 aagtagagcg ccttatcacc tcaaatggtc aaaaggtgct tattttaatg cgaaagtgga
    35041 tggtctaggt gctacatcag caacgcgata cggtgacagc cgtggtactt atcaatttaa
    35101 tgtaggacaa gctgaatatg tagcaggtac tttaatttat gtatttgaga ttattgatgg
    35161 ttggtgtcgc atctattgga ataatcataa tgaatggatc tggcatgaaa gactaatcgt
    35221 taaagaagtt ttttaattgt aagttgggac tatccctata tggattgcct tttttgtgtg
    35281 ttaggaaatg acgttttagt ttcttaatgc tataca
//
LOCUS       DANHOL010000006        33698 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.006, whole genome shotgun sequence.
ACCESSION   DANHOL010000006 DANHOL010000000
VERSION     DANHOL010000006.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 33698)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 33698)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..33698
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.006"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(37..945)
                     /locus_tag="PTC08_000179"
     CDS             complement(37..945)
                     /locus_tag="PTC08_000179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AEC family transporter"
                     /protein_id="HDK5681716.1"
                     /translation="MTENFLMILLLIALGYILKRIGYINGKDSRVISTLVLNVTLPSV
                     VIVNLNHVNLTPSLVVLPVMMILYGVVTKVLIVLMFIKYSNEVRGTVAMMMAALNIGI
                     FAYPLVQQIWPEQGLLYFGMADIGGAIVMFGLTYFAASYFKQVGGGFNPKQILWNMLK
                     SVPLMTYIIMLVLNILQWHLPHTAIRFFDILGHANLPLSMILLGVLMDFRLERRFLPL
                     TLKYLVLHYGFGALFGTLVYFFLPVDDAMIKTTLQLIWLLPVGVASLSYAVQFKYRTL
                     PVIAMASNVTIVISIVILYLYQFWFV"
     gene            1052..1222
                     /locus_tag="PTC08_000180"
     CDS             1052..1222
                     /locus_tag="PTC08_000180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5681717.1"
                     /translation="MDLEQQLQELKMDYVRLQGDLEKRESTSQQVDPLIQQLEQIEQQ
                     IAEVRRQLRENL"
     gene            1292..1609
                     /gene="mspA"
                     /locus_tag="PTC08_000181"
     CDS             1292..1609
                     /gene="mspA"
                     /locus_tag="PTC08_000181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane stabilizing protein MspA"
                     /protein_id="HDK5681718.1"
                     /translation="MLAYLILLPLMYLVVAYISIFKMRIMMPKLLRVIMGLLLIIVVA
                     TSLVYYPASTWWVFVVLILLIGNVEITAFKHSKNDEKGVRILNMMSLFILVIYIVLVA
                     VFI"
     gene            complement(1749..2906)
                     /locus_tag="PTC08_000182"
     CDS             complement(1749..2906)
                     /locus_tag="PTC08_000182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HDK5681719.1"
                     /translation="MAYTTILSEIPDSYFGKTVGQKIEHGPLPLINLAVGIPDGDTPP
                     EIIKALQEAIVKPANQKYLAFQGKDAFRQAIVDFYQRQFNVTLDPDKEVCLLYGTKNG
                     LVALPTCVIEPGDEVLLPDPGYTDYDAGVRLARGIPKPLKLSPERHYIPDWNEVDTTN
                     TKLIYLTYPNNPTGSVATLEFFQETIDRFKNTSIKIVHDFAYQAFGFDQPNPSILQAD
                     GAKSSAIEVFSFSKGYNMSGYRVGFAVGNEEMIANLRKYHTHTQAGMYGALQDACTVA
                     LNACDHELKKQNDIFRKRRDKIEAALNEAAIPHEPIKGGIFLWLQCPEGFSSDAFIQH
                     LLQEQSILAAPGHPFGEEGEGYVRLSFAIDEIQLDEAIARLVSLKPLYHQA"
     gene            complement(3110..6262)
                     /locus_tag="PTC08_000183"
     CDS             complement(3110..6262)
                     /locus_tag="PTC08_000183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HDK5681720.1"
                     /translation="MVKKLIDFSLSNKFAILLMVFLVILGGVYASFKMRLELLPDTEP
                     PMLTITTPMPGATSETVMKEISDPIDEEIRGMAGVTSVKTQSLSNASMVTVNFDESTD
                     MDKAEQDIEKALKKVGLPDEAQTSDIKRNSMNAFPVVAYSILHDKDDVKVSTKAVKEQ
                     LIPKLQMIDGVQRATVNGQIERKVTIKFNDAKLQKAGLNAKQVSDYIEGATKESPLGL
                     FQFGDTEKSVVVDGQYASVDALKNMQIPLALASQSSGNSTQGQQDGGASERGHATSGQ
                     VSLNNPQSAQAVALSDLAEVKLSDERESISRTNGQDAVDVQIVKTQGANTVAVANDVN
                     QTIQDFVKAHPELKSVKIMDTSKPIKDSLNTMIEKALLGSIVAVIVIMLFLRNVRMTA
                     ISIVSIPLSLLIAMVALKLTDVSLNILTLGALTVAIGRVIDDSIVVIENIYRRLSRQD
                     ESLSGDGLIVSATKEVFIPIMSSTLVTIVVFAPLAFVTGSVGEMFRPFAYAITFSLLA
                     SLLVSITIVPVLGSIFFKHGLKRKPKSELGTVGRGYRKVLNWSLNHKWTVIILSTAIL
                     IGSIALGSMKIGTSFISTGEDKFMALTYTPKPGETKQKVLSHAEEVEKYLLGNQHVRH
                     VQYSVGGASPVDPTGSTNNMALMVEYDSDTPNFDQEPERVLKHIKTYHHDGEWKNLDM
                     GTGATSNTLNVEVTGPSTAAIEGTVKAIQQKMSQVPGLTNVKSDLTETYQQYEVKVNP
                     NEAAKTGMTAGQLAMMLNQNIPDMTVSKVKDQNQTYDVVVQQEKDTDWTKEKLENTPV
                     PSPTGDNRKLSDIATLKTTSTPNALVKKGGDYVSTVSATISGEDVGSISQKVMKQLNE
                     LDKPSDVHTSLGGTNEDIQEAFSQLMIAMLAAIIIVYLVLVLTFKGALAPFTILFALP
                     YTVIGVVLALIITGETLSVPSMIGLLMLIGIVVTNAIVLIDRVITNEKAGLPMKEALL
                     EAGGTRIRPILMTAIATIGALIPLLFGQDSSVLISKGLAATVIGGLLSSTLLTLIVVP
                     VIYEILFTLKAKLTRRKKKA"
     gene            complement(6481..7761)
                     /locus_tag="PTC08_000184"
     CDS             complement(6481..7761)
                     /locus_tag="PTC08_000184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020220115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid II:glycine glycyltransferase FemX"
                     /protein_id="HDK5681721.1"
                     /translation="MKRMNITDQEHDAFVKAHPNGDLLQLTKWGDTKKLTGWYAKRIA
                     VGENGELKGVGQLLFKKIPRTPFTLCYASRGFVVDYTNTVAVKALLSEAIQVAQSEKA
                     YTIKIDPDVEVDQGMTVVQDLLKMGFKHKGFKEGLAKDYIQPRMTMITPINQSDEALI
                     QSFENRNRSKVRLALKRGTKVERKGREDLKIFADLMKETGERDGFLTRDVSYFETIYD
                     ALHPDGDAELFLVKLEPTPVLAELKVEQQHLQTEMDTLAEKDQNNKKVQNKLKDAVQK
                     MNKNQALIDDMTQLERTHPEGIYLSGALLMFAGHKAYYLYGASSNHYRDFLPNHHMQF
                     KMMQFAREKGATTYDFGGTDHNPDKDSSHYGLWAFKKAWGTRLSEKIGEFDYVLNPIV
                     YKAVEQFKPQLTQLKIKLVRQIKSIQQRKGQKNA"
     gene            7878..8132
                     /locus_tag="PTC08_000185"
     CDS             7878..8132
                     /locus_tag="PTC08_000185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5681722.1"
                     /translation="MRQLILLLLSIINIIFIVYTFVFHIGIDYLSLRIIFVAFSLVVG
                     IYSVLLHETKQQLLLSVIEAIIALLHIVLIISAVYSVVYA"
     gene            complement(8123..8890)
                     /locus_tag="PTC08_000186"
     CDS             complement(8123..8890)
                     /locus_tag="PTC08_000186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HDK5681723.1"
                     /translation="MIDIEFDHVIHYIDGLNQFEFPGKYLEIQSGGQHENLGTYNRLV
                     QIDLSYIELIDIYHQGKMKQQSKTDVGKHSFATSIMENGYRQGFKKICFRTHDIEQLK
                     VQFEARGLETVGPVEMTRENKKGQTIQWRLLYVANHQFDVIMPFFIEWHASDETREAD
                     LQEHFHQHLTLDMITVNTYQRQTMVDHWKQWFDMEEVESSDRYTILQSPAKKIKFKVM
                     EDKEDGIEAVQFIDQTIDAPIAFRTRGARYQFIPPHA"
     gene            9064..9510
                     /locus_tag="PTC08_000187"
     CDS             9064..9510
                     /locus_tag="PTC08_000187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020220116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HDK5681724.1"
                     /translation="MEPSILFDHFTKLYRPYIKLVHPLLDEHQLYPAQWLVMKDIAIN
                     PGTTLVQISKRRSIEKPTTRKILKALDAQGWLLIRPGEMDKREKHLYLSESGQAIHQK
                     LKLQIGQLQQQVIEPLQLSDDEIARATDILEQLYQSLLAQLQNDEM"
     gene            10006..11877
                     /locus_tag="PTC08_000188"
     CDS             10006..11877
                     /locus_tag="PTC08_000188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease"
                     /protein_id="HDK5681725.1"
                     /translation="MKSKLITSTLVLGLLTTGTIFQDLAAQAETTSSTLIHDIQGAGH
                     TSPLKDQRVEKVPGIVTYIYKANNSYYFHLQTPDAQKDNNPATSEGIIVFAGKEKPNV
                     KVGDLIHVSGTVREYAIEGYAEKQQTDLPLTEIDARPDQAGQITVQKTHQPLPQPVKI
                     KKIPQQIASPQHFSVFKPDTYAVDFWEALEGMRVEFGDVRSVGPQDHGEVFTVLNQTR
                     RETKNGGILLKPDNANGQRIAFKMNDDNKRAQDFNIVTGDRFKGPLIGYVNYGFQNYK
                     VNIDLKEMQQAYVKGKAQPKGTTLKPSENKLTVASYNLENFSNDVKSSSDDKAQKLAN
                     GIVNHMKQPDIVGVTEVQDNNGPNKGSSDASASYKRLIQAIKDAGGPTYRYVNIDPEN
                     NVDGGQPDANIRVGFLYNPERVTFNDHIPAGDATTSVAYENNQLTRNPGRIAPQDPAF
                     EDVRKSLAAQFDFKGQQVIAIANHWKSKRGDDGLFGSHQPVRLTSEPQRVEIAHRIGE
                     FTAQVQQQNPNAAIISVGDYNDFQWSKPLKTFESYGLTNKVKDVPKNKRYSYVYQGNT
                     QTLDHILVSEHLKRQTKLDMIHVNSDFTDMAGRASDHDPILAQIDFTKQINKQKKQK"
     gene            complement(11954..12976)
                     /gene="moaA"
                     /locus_tag="PTC08_000189"
     CDS             complement(11954..12976)
                     /gene="moaA"
                     /locus_tag="PTC08_000189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP 3',8-cyclase MoaA"
                     /protein_id="HDK5681726.1"
                     /translation="MADQILDKLGRPIRDLRISVTDRCNFRCDYCMPKEIFGDDYVFL
                     PKNQLLSFEEIVRITKLYAQLGVKKVRITGGEPLLRRDLHQLIAQITQIEGIEDIGLT
                     TNGLLLKKHGQKLYDAGLRRINVSLDAIEDRVFQAINNRDIKATTVLEQIDYAISIGL
                     KVKINVVVQKGVNDHQILPMVRYFKDKAVTIRFIEFMDVGNDNGWDFSKVVTKDEMLA
                     MIASEFDIEPVSPKYYGEVAQYYRHVGSQAQFGLITSVSDSFCSSCTRARLSSDGKFY
                     GCLFSTGSGFDIRGLLRSGMDDAEILSQLKALWHIRDDRYSDERTAETVAKRQQKKIN
                     MNYIGG"
     gene            complement(12993..13598)
                     /gene="mobA"
                     /locus_tag="PTC08_000190"
     CDS             complement(12993..13598)
                     /gene="mobA"
                     /locus_tag="PTC08_000190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor guanylyltransferase MobA"
                     /protein_id="HDK5681727.1"
                     /translation="MKAIILAGGHSERFGSPKAFAKINGTTFYHKLVQTLQATNMFNE
                     ILISTNEQLFSQFQHDTVVVDEPKHRDKGPLAGIYSVMSRDTDEDLYFVISVDTPMVT
                     QKAISHLYQFMVANLIEEHLDIAGFMDDARPIPTIAFYHKRVLPIIENVLQSDDLSMK
                     HVYDQVSTDWLEANTIGSPRYWYQNVNYQQDLAALEAELAK"
     gene            complement(13608..13841)
                     /locus_tag="PTC08_000191"
     CDS             complement(13608..13841)
                     /locus_tag="PTC08_000191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001832421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MoaD/ThiS family protein"
                     /protein_id="HDK5681728.1"
                     /translation="MKVLYFAEIKELVNRSEDVFHFDYAVPVADLTTLLYQTYPVIQG
                     KKFQVAINEEFARAEDLIQPYDVVALIPPVSGG"
     gene            complement(13838..14296)
                     /locus_tag="PTC08_000192"
     CDS             complement(13838..14296)
                     /locus_tag="PTC08_000192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein MoaE"
                     /protein_id="HDK5681729.1"
                     /translation="MKQFEVTTQPLEPEKYRAYTLNEKQGAVVVFTGHVREWTKGVRT
                     EYLEYEAYVPMAEKKLAQIGDEITERWPGTIIAIGHRIGALQISDIAVCISVSSPHRK
                     DAYAANEYAIERIKEVVPIWKKEIWEDGAEWQGHQRGYHDDAVNKGGLST"
     gene            complement(14302..14778)
                     /gene="mobB"
                     /locus_tag="PTC08_000193"
     CDS             complement(14302..14778)
                     /gene="mobB"
                     /locus_tag="PTC08_000193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-guanine dinucleotide biosynthesis
                     protein B"
                     /protein_id="HDK5681730.1"
                     /translation="MIIQVVGFKDVGKTTLMEKLVAYVKRLGYAVVTIKHHGHAGEDI
                     KLPADHLDHMRHFNAGADQSIVQGHQYIESVQSADEMPLRTLIDECVTIKKSIIFVEG
                     YKHEHYDKVIVYRNEAEYAQLQQLSNVKFAIKRDATTSDEHALFAWLTEWIEMNEG"
     gene            complement(14775..16034)
                     /locus_tag="PTC08_000194"
     CDS             complement(14775..16034)
                     /locus_tag="PTC08_000194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HDK5681731.1"
                     /translation="MPVEKRHPIPVSEAIQRVMKQNIEMKTTTVNIYESEGYILAEDI
                     VATYDIPRFDKSPYDGFAVRSVDTVGASSDNRIQFKVIDHIGAGSVSTKQLEAGQAVR
                     IMTGAEMPQGADAVIMLEQTVETAEGFTIRKPFESLENVSIKGEETATGDVVLTKGQR
                     INAGVVAVLATFGYVDVPVFQKPTVAIIATGSELVDIDAPLEPGKIRNSNGPMIDALL
                     RKERIEAELYKIQQDDFDSSLAVVKKAFDEHDIVITTGGVSVGDFDYLPDIYKALNAD
                     VLFNKVAMRPGSVTTVAVSEGKYLFGLSGNPSACYSGFELFVKPAMYHMMHAEKCYPS
                     MVRATLMEDFKKANPFTRFIRANVVLTGREATVRPSGFNKSGAVVSIAHSNAMIVLPG
                     GTRGFEQGHDVQVILTSSEAYQRESSL"
     gene            16105..16590
                     /gene="moaC"
                     /locus_tag="PTC08_000195"
     CDS             16105..16590
                     /gene="moaC"
                     /locus_tag="PTC08_000195"
                     /EC_number="4.6.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic pyranopterin monophosphate synthase MoaC"
                     /protein_id="HDK5681732.1"
                     /translation="MSEFTHLNAQGHAKMVDVSDKQVTKRTAIARSSIQVNTTIYEQI
                     TQNTNKKGNVLNTAQIAGIMAAKNTSSIIPMCHPLALTGIDVDFDWDTSEKQYILHIT
                     TTVSTNGKTGVEMEALTAASVTALTIYDMCKAVDKGMVIGETYLVQKTGGKSDFNRTS
                     D"
     gene            complement(16850..17350)
                     /locus_tag="PTC08_000196"
     CDS             complement(16850..17350)
                     /locus_tag="PTC08_000196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein MoaB"
                     /protein_id="HDK5681733.1"
                     /translation="MHTNVKLERPIRCAVLTVSDTRTTETDKGGQSVQTLLQTADFEV
                     EIQHYMIVKDELTAIQSTVQQWLTGDVDVIVTTGGTGIAPRDVTIEAVTPLLDKEIEG
                     FGELFRYLSFTEDVGTRALLSRAVAGTAKRTLIFCLPGSTGAVKLALNRLILPELTHL
                     VYEMNK"
     gene            complement(17366..18376)
                     /locus_tag="PTC08_000197"
     CDS             complement(17366..18376)
                     /locus_tag="PTC08_000197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ThiF family adenylyltransferase"
                     /protein_id="HDK5681734.1"
                     /translation="MMMGEERYSRQVLYKGIGPGGQQKINAKAILIVGMGALGTHLAE
                     GLVRAGIGKLIIVDRDYIEHSNLQRQTLFTERDADESVPKVMAAKDMLQAIRRDVHIE
                     AYIAHVDRDFLETHVPTVDLILDATDNFETRMLINDAAYYYRVPWIYGGVVQSTYVSA
                     PFIPGQTPCFQCLVPQIPSLNLTCDTVGVIQPAVTMTTSFQLRDAFKILTETPFEPKL
                     TYGDIWEGTHFAFDMRRLQREACPTCGHQPSYPYLNARTSTYAALCGRDTIQYHHPEL
                     TFERLKSFLDAREMPYKSNGYLLQFKFENSRIVAFQDGRLLIHGLKDIDAAQVMIHKL
                     FG"
     gene            complement(18662..19267)
                     /locus_tag="PTC08_000198"
     CDS             complement(18662..19267)
                     /locus_tag="PTC08_000198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HDK5681735.1"
                     /translation="MLNLQINMTINERHIGLQIQSNQPKIYAIQGVSGIGKTTLLNVI
                     AGICNPDYGKIEINGRVLTDTEQQRHVPIRERHIGYLFQDYQLFPHMTVLDNITFMIR
                     LNTHIANLMKHLNIEHLKHVYPERCSGGEKQRVALARALSMRPEILLLDEPFSSLDEG
                     TRKESMDLVKQVFDEWHIPIIFVTHSKWEADTLADEVIVIE"
     gene            complement(19268..19939)
                     /gene="modB"
                     /locus_tag="PTC08_000199"
     CDS             complement(19268..19939)
                     /gene="modB"
                     /locus_tag="PTC08_000199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter permease subunit"
                     /protein_id="HDK5681736.1"
                     /translation="MPDLTPFWISIRVAFVSTVIVFILGITLARIMYYRKSKWTHLIE
                     SIILLPIVLPPTVLGFLLLMFFSVDHPVGHLLTDILGIKVVFTWVGAVVASVIVSFPL
                     MYQHTVQGFRNINPRMLNTARTMGASERKIFFKITLPLSKRAIISGTMLAFARAIGEF
                     GATLMIAGYIPGKTNTLPLEIYFLVQQGREHQAWLWVLVLVSFAISIIGTMNMMNQER
                     YREVD"
     gene            complement(19949..20722)
                     /gene="modA"
                     /locus_tag="PTC08_000200"
     CDS             complement(19949..20722)
                     /gene="modA"
                     /locus_tag="PTC08_000200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter substrate-binding
                     protein"
                     /protein_id="HDK5681737.1"
                     /translation="MKRWVGLLMVIGLFAVILSACGQKGTQSDDKKSTSEQPLVISAA
                     ASLTDVTKVLEKEFHKAHPNISVSFNYGGSGALREQIDKGAPVDVFMSANTKDVDMLK
                     EKGKVRHTYDYAHNKLVLIRRKGSDIQSIDQLGDNDQLAIGEVKSVPAGKYAKTYLED
                     QNKWSSVENHIVYAKDVREVLNYVKKGNAQLGFVYQTDLYVGKTPHDGVEKVLDAPLK
                     TPIVYRMGTVTDTEAANAWYDFMKSNTAQRILKDYHFEK"
     gene            complement(20813..22312)
                     /gene="galT"
                     /locus_tag="PTC08_000201"
     CDS             complement(20813..22312)
                     /gene="galT"
                     /locus_tag="PTC08_000201"
                     /EC_number="2.7.7.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose--hexose-1-phosphate
                     uridylyltransferase"
                     /protein_id="HDK5681738.1"
                     /translation="MANAAHVYQFADAIIAYGDYEAGDRIYVVNQILSRLKADDIALL
                     DTEHDIQPQAPIEIVNLLIEDAIERGAFEDILSAREQLEATLMDLITPKPSTVNREFY
                     KRYQLSPEAATDYFYQLSHLNHYIKEEAIAKNIVYHVPTAYGDFEITINLSKPEKDAK
                     QIEREKNAPESFYPKCAICMENEGYYGTMTSAARSNHRIVQMQINGEAWGFQYSPYLY
                     FNEHSILLSREHTPMLINQATFENLLDFVKQFPHYTIGSNADIPVVGGSILSHNHYQA
                     GRHTFPMALAPIERAFELKDFPTVHAGIVKWPMSVIRLMATDTEQLIEASEWIRHQWE
                     SYSDASVQVKAYSDSGERHHTVTPIARFRDGRYEMDIVLRDNQRTEEFPDGLFHPHQD
                     VQHIKKENIGLIEVMGTAILPGRLKNELQNVIAFLNGDETVDLGVHTAWAQDMKEEYD
                     FGTDDAEAIVRQEVGYKFERVLQDAGVFKRDEAGQVAFQRFIATLNVKN"
     gene            complement(22325..23317)
                     /gene="galE"
                     /locus_tag="PTC08_000202"
     CDS             complement(22325..23317)
                     /gene="galE"
                     /locus_tag="PTC08_000202"
                     /EC_number="5.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 4-epimerase GalE"
                     /protein_id="HDK5681739.1"
                     /translation="MSMLVLGGAGYIGSHCVDQLVEAGYDVVVVDNLVKGHREAVHAD
                     ARFYEGDVRNREFLNDVFEKEDIEGVFHFCAYSLVGESVEYPLEYFNNNVYGLQVLLE
                     VMREHDVQHIIFSSTAAVYGEPEAVPIDETSQKLPTSPYGESKLVMEKMMRWCHEAYG
                     VNYAALRYFNVAGAKENGAIGEDHHPETHLIPVVLQVALGQRDELKMFGDDYDTPDGT
                     PIRDYLHVTDLISAHILAYDYLKAGGESGAFNLGTNHGYSVKEILNAAREVTGRDIPA
                     VVAPRRAGDPSKLVASSDKAKALLKWQPQHDDIHEIIRTAWEWHQKHPNGYENV"
     gene            complement(23333..24499)
                     /locus_tag="PTC08_000203"
     CDS             complement(23333..24499)
                     /locus_tag="PTC08_000203"
                     /EC_number="2.7.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactokinase"
                     /protein_id="HDK5681740.1"
                     /translation="MQNLTQTFKNIFNGEPTLSAFAPGRINLIGEHTDYNGGFVFPAA
                     IELGTYGVGRLRDDRKIQLYSVNFESAGVMAFDLDHLDYNAEHQWANYPKGMIRYLVE
                     QFPEINRGFDIVVEGNIPNGASLSSSASIELLTGHLVTTLFGIEMERLELVKMGQRVE
                     NEFIGVNSGIMDQFIVGFGKKDHAILLDTNTLEYHYVPTEFGDYKISIMNTNKRRELA
                     ESKYNERRSECERALAQLQNYLDVQSLGEISVAQFEKYGDKIDDDVLRRRAKHAISEN
                     ERTKKAYEVLQAHDFEAFGQLLNASHASLKDDYEVTGLELDTLAEAAQQVDGVLGARM
                     TGAGFAGCAIALVHKDKIADLEAKVTKAYTETVGYAPSFYHVDIANGVRTLEEK"
     gene            complement(24542..25576)
                     /locus_tag="PTC08_000204"
     CDS             complement(24542..25576)
                     /locus_tag="PTC08_000204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020220286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HDK5681741.1"
                     /translation="MMASIREIAKEAGVSPGTVSRVLNEDPSLSVATKTRQRIIEIAN
                     ARNYTKQKRLTRQIQIVTHASKEKEMIDPYYRELRLAIEKEVKHLNLTLKKTIRTNTL
                     TSIEQLQQVEKAGSVIVIGPFKQSVIQQLYTYNARLILINQIDAPNHIDAVSSDLYDS
                     MQVLLESLQQQHVGKVAYVGGETKVRDVGQTHDTVADARQRAYIDWCAQTNAEELYYP
                     SNWERHNGLEIGQRIAQSGALPQVVITGNDVLAVGVLQGLQQAQIRVPEDVQLVSFND
                     SEITQYTAPMISSVRIPIEEFGRQAVRLAQDQMKGQRQVAIHMQLNTYLNYRESFLKA
                     VSVDSQMDKQ"
     gene            25735..26532
                     /gene="fdhD"
                     /locus_tag="PTC08_000205"
     CDS             25735..26532
                     /gene="fdhD"
                     /locus_tag="PTC08_000205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase accessory
                     sulfurtransferase FdhD"
                     /protein_id="HDK5681742.1"
                     /translation="MSPDFKTNQPIVRFENGVLFETEDDYVTEVPLTIMVNREEFATV
                     ICSPNQLEELVLGFLASEGVILKRDELKSLEIDERRGYAHVEITSSIHDRVQLSTKRL
                     VASCCGKSREFYFQNDAAIAKTSMSNLQLTPSQILSMMARLQAQSRVFKATGGLHNAA
                     ISDGNAFYIHRQDIGRHNALDKLYGYCIQRHIGVRDKVLIFSGRISSEILIKAAKIGV
                     GMIISKSAPTTLAVQLAHDLNITAIGFVRDDYFNIYSHPERVKQAEM"
     gene            complement(26610..27383)
                     /locus_tag="PTC08_000206"
     CDS             complement(26610..27383)
                     /locus_tag="PTC08_000206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDK5681743.1"
                     /translation="MEVQMSDIYSEGDIYSKDDDVTIYMTPTTPLTYDNNKWVYHQMP
                     DVTQFKADMKRQQSLHADHGVLTHLKFEFPENVKPNIDIMQLLRAEGFQVGNLELYMI
                     EAADLRQLTGPSLEIEPVTIKNMADYMHVYEPLSIQFGADYIKESAQALLTNLKKDTR
                     ALQPYIAYENAQPVGIMNVIETERTVELDGFAVAEAARGRGVGSRMQAFMGEIARERP
                     VILVADAEDTAREMYMKQGYTFVSFQYSALKELTVSVSY"
     gene            complement(27406..27966)
                     /locus_tag="PTC08_000207"
     CDS             complement(27406..27966)
                     /locus_tag="PTC08_000207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin transporter BioY"
                     /protein_id="HDK5681744.1"
                     /translation="MNTKFLVYTALMTAIIAVMGFIPAIPLPFIPVPIVLQNVGIFLA
                     GILLGRRYGTLSVIVFLLLVFMGAPLLSGGRGGYGVFVGPSVGFLIMYPIAAFLIGWM
                     RDKYFETLDFKRTFAIIVIFGVVLLDLVGAIVMGFVIHMPLSKAIYLSLTFLPGDLVK
                     AAIASLIAIALFNNPVVSRIMQQLAK"
     gene            complement(28047..28910)
                     /locus_tag="PTC08_000208"
     CDS             complement(28047..28910)
                     /locus_tag="PTC08_000208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HDK5681745.1"
                     /translation="MKKIAFDIGGTYIKSAIIDENRQLQDYDKVRTPVNENDAIINYV
                     EARLQRYIQEHQLQAVAVGISTAGAVDRKARTIAYANPNILNYTGTNFVDKLSAYVQE
                     LVVYNDVDAALLGELDEREVDYESAFCLTLGTGIGGSYYQRNVGLLTGIRHRPNQIGY
                     LLYDPETKTQYEQRASTEALKQLLMRENYPHQNIQQLFEEAENGDATARHYIQQWARE
                     VARGIAEIQIVYDPELIIIGGGVSAQGDVLLRYILPELKRYLPEDYGHAKVEVAQLQN
                     HAALLGAVAEL"
     gene            complement(28891..29562)
                     /locus_tag="PTC08_000209"
     CDS             complement(28891..29562)
                     /locus_tag="PTC08_000209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FadR family transcriptional regulator"
                     /protein_id="HDK5681746.1"
                     /translation="MAEMLSRSGKSLKQTVVQKIKDYIIAESLQVGDKLPTERKLAES
                     YQVSRSVVREALSYLENTGVTESVQGRGTLVKAQDITPLIEGFLFSFQVSHGNLKDLM
                     MLRLTFELAAIDIIERKQAPLTSIAESLVDDVQAFNVSADQKFHESILTAVDSSLFQQ
                     MSAVVQAYFYQTPIETSHEENVRSMTEHRNIYEALKDGNFSLAKALLTQHLMRGAEFY
                     EKDSF"
     gene            29720..30601
                     /locus_tag="PTC08_000210"
     CDS             29720..30601
                     /locus_tag="PTC08_000210"
                     /EC_number="4.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylneuraminate lyase"
                     /protein_id="HDK5681747.1"
                     /translation="MHENLKGLYAALLVPFDENGQVKEQGLRAIIRNAIDEQQLDGLY
                     VNGSSGENFLMNTEQKKEVFRITKDEAKDDIRLIAQVGSLDLNEAIELGQYATELGYD
                     SLSAVTPFYYPFTFEEIRDYYFAIIEATQNNMIVYSIPGLTGVNISIQQFEELFQNDK
                     VIGVKYTAPDFYLLERLRQAFPDKLIFSGFDEMLVQAAISGVDGAIGSTFNVNGRRIR
                     QIFEHAQNGSVEEAYRIQHDTNDIIETVLSMGLYPTLKAILAEKGIDTGVPKAPFHPF
                     NEAHRDALKTLINQYQL"
     gene            30743..32269
                     /locus_tag="PTC08_000211"
     CDS             30743..32269
                     /locus_tag="PTC08_000211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020220283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:solute symporter"
                     /protein_id="HDK5681748.1"
                     /translation="MGTIGFGFWNWIALILYLLIMLGVGAYFTKRAGKDTDSFFKASG
                     RLPSWVVGFSIYATTLSAITFMSTPEKSYLTDWSYIAGNIAIVAIIPLLIHFYIPFFK
                     KLKITSAYEYLEARFNPAVRVIGSVLFILFHLGRVAIVIYLPTLAITAVSNINPYLVA
                     SLVGVLCIIYTFLGGFEGVVWSDFIQGVILLGGALVIIITGIVHIDGGFGTVLNEAVS
                     NHKLISADNWKMNAAAAAIPIIFLGSIFNNLQQYTASQDVVQRYQASESLKETSHSIW
                     TNGVLALISAPLFYGMGTVLYVFYATHTALPKDFNTSSIVPYFILTEMPPFIAGLMIA
                     AIFAAAQSTISSSLNSIAACFSVDIKQRFFGIKSDATEVRMARVTTVVTGLIGMLISL
                     YLIAADSNDVWDLFLLITGLFGVPIAGIFAVGIFTKRTHGVGVIIGIFVAVIVSYFLQ
                     GQGIGGAGSPFYISIIAFMTAFIVAYIASLIIPTPKKDISGLTIFDKHGAITYVRKTK
                     "
     gene            complement(32710..33633)
                     /locus_tag="PTC08_000212"
     CDS             complement(32710..33633)
                     /locus_tag="PTC08_000212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDK5681749.1"
                     /translation="MKRLLLPLLVCMLILAACGQNDNQSSEKETKAFNLKTAKGEEKI
                     DIPKDPKRIVVMAPTYAGGLKYLDANIVGVSDQVDQSPVLAKQFKDVDKVGAEDVEKV
                     ASLKPDLIITYNTDKNTDKLKKIAPTIAFDYAKYNYLEQQEAMGDIVGKSDEVKKWKA
                     DWEKQTAQDSKDIKAHLGDDTSVTIFEDFDKKIYAYGKNWGRGSEVLYQAFGLQMPKA
                     LDDATKKEGWTEVPKEEVGKYAGDVIITAKAKDAAQPEFQKTAMWQNLEAVQNKYAFN
                     VDSSVYWYNDPYTLDVTRKDLKKQLLALPTN"
BASE COUNT         9786 a         7409 c         5942 g        10561 t
ORIGIN      
        1 aaagaggcag ggacactgat ttcccaagcc tcttttttat acgaaccaaa attgatacaa
       61 atataaaatc actatactga ttacaatcgt aacgttactc gccatcgcaa tcaccggtaa
      121 cgtccgatat ttaaactgaa ccgcatatga cagtgatgca accccaacag gtaacaacca
      181 aatgagctgt aatgtcgttt tgatcatcgc atcatctacg ggtaagaaga aatagacgag
      241 cgttccgaat agtgcaccaa aaccataatg taacacgaga tatttaagtg ttaacggcaa
      301 aaagcgacgt tctaatctaa agtccattaa aacaccaagt aaaatcatcg aaagtggtaa
      361 gttggcatgg cctaaaatgt cgaagaaacg aattgctgtg tggggtaaat gccattgaag
      421 aatattgagt actaacatga taatatatgt catcaacgga acagatttca acatgttcca
      481 taagatttgc ttaggattaa aaccgccacc tacttgtttg aaataactcg cagcgaaata
      541 cgtgaggcca aacatcacga ttgccccacc gatatcggcc atcccaaaat acaacaaccc
      601 ttgctcaggc caaatttgtt ggactaacgg atatgcaaaa ataccaatgt tgagtgctgc
      661 catcatcatt gcgacagttc cccgcacttc attactatat tttatgaaca tgagtacaat
      721 aagcactttt gtcacaacac catataaaat catcatcaca ggtaatacga cgagtgatgg
      781 cgtcaaatta acatgattta aattgacgat aacgacagac ggcaaggtca cattgagcac
      841 taacgtcgaa atcacgcgac tgtccttccc attaatataa ccgatgcgct ttaggatgta
      901 ccctagtgca attaataata atatcatcaa aaaattctct gtcatgatac atcccccttt
      961 gaaacaactt gcttttatat tactgtaaaa cgttttaatt aagcaatgtt aacgtgctat
     1021 aatgaaaagg attgatataa ggaggtgccc tatggattta gaacagcaat tacaagagct
     1081 taaaatggac tacgtacgat tacaaggtga tttggaaaaa cgcgagtcca catctcaaca
     1141 agtcgatcca ctgattcaac aacttgaaca aattgaacaa caaattgctg aagtacgtag
     1201 gcaacttcga gaaaatcttt aaaaggagcc attcaactct aacttaatca acatttgact
     1261 tcactagcaa gatatagaaa ggatgtactt catgttagct tacttaatct tattacccct
     1321 catgtatttg gttgttgcct atattagcat ttttaaaatg cgtattatga tgccgaagtt
     1381 attaagagta attatggggc tattactcat cattgtcgtt gcgacttcac tcgtctatta
     1441 tcctgcatca acctggtggg tatttgttgt cttaatttta ttaatcggta atgttgaaat
     1501 tacagcattc aaacattcta aaaatgatga aaaaggtgta cgtattttaa atatgatgag
     1561 tcttttcatt ctcgttattt atatcgtact ggttgcagtt tttatttaaa actgccactt
     1621 acatatgcat atcatgtcca tgaagagcta acgttgcgtc tcagtcatag cgcaccgtta
     1681 gttttttgta tataactaaa caaaaaggac cgatgtgaca ttatgtcatg tcaccagccc
     1741 tcttttttct atgcttgatg ataaagtggc ttcaatgaga cgagtcgcgc aatggcttca
     1801 tctaattgta tttcatcaat cgcaaaagat aaccgcacat agccctcccc ttcttcacca
     1861 aaaggatgcc ccggtgctgc caaaatagat tgttcttgca ataaatgttg aataaaggca
     1921 tcgctggaaa aaccttctgg acattgcaac cataagaaaa tacccccttt aatgggttca
     1981 tgcgggatgg ctgcttcatt caaagctgct tctattttat cgcgtctttt cctaaatatg
     2041 tcattttgtt ttttcagttc atgatcacat gcatttaatg cgaccgtaca tgcatcttgt
     2101 aacgccccgt acatgccggc ttgggtatgt gtgtgatact tccgaagatt cgcaatcatt
     2161 tcctcgttac cgaccgcaaa accaacacga tacccggaca tattataacc ttttgaaaat
     2221 gaaaaaacct ctatagcaga tgatttcgca ccgtctgctt gaagaatact cgggttcggt
     2281 tgatcgaatc caaatgcttg atacgcaaaa tcatgcacaa ttttgataga ggtgttttta
     2341 aaacggtcaa tcgtctcttg gaaaaactca agcgttgcga cagaaccagt cggattgttc
     2401 ggatacgtta aatagatgag ttttgtattt gtagtatcca cttcattcca atctggtatg
     2461 taatgacgtt caggtgataa ttttaatggt ttaggtattc cccttgcgag tcgcacgcct
     2521 gcatcataat ctgtgtagcc tggatcgggt aataacactt cgtcacctgg ctcaatgaca
     2581 cacgtcggca atgcaacaag cccatttttg gtgccataca acaaacaaac ttctttgtcc
     2641 ggatccaaag taacattgaa ttgccgttga taaaaatcaa caatcgcttg tctaaaggcg
     2701 tctttccctt gaaaggctaa atatttttga ttggcgggct tcacaatcgc ttcctgtaac
     2761 gcttttataa tttcaggggg tgtgtcgcca tcaggtatac caactgccaa attaatcaat
     2821 ggtaatggcc catgttcaat tttttgtcct actgttttgc caaaataact gtccggtatt
     2881 tcactcaaaa ttgttgtata tgccatcgtc ttcctcctta catatcttta tttttatatg
     2941 gaaatcgtta tacctataaa gagaaagggc tgagacaaag tcatatacat atcctgtctc
     3001 aaccctcttg cttatgttta aggtattccg tgtcttgcct gacgaaccga cttattttat
     3061 tgaggataat ggtttcatct tacataatga accgctttac gtcaatggtt tatgccttct
     3121 ttttacgtcg tgttaacttc gcttttaacg taaacaaaat ttcataaata acaggcacga
     3181 caataagtgt gagcaatgtt gatgataaca aaccaccgat aactgtcgcc gcaagtcctt
     3241 tcgaaataag cacagaactg tcttgaccga ataacaacgg aattaatgca ccaattgtcg
     3301 ctatcgctgt cattaaaata ggccgtatcc gtgtgccgcc cgcttctaat agcgcttctt
     3361 tcataggtaa accggctttt tcatttgtaa tgacacggtc aataaggaca atcgcgtttg
     3421 tcacaacgat accaattaac ataagtagac caatcatact tggtacagat aatgtttcac
     3481 cagttataat taacgccaaa acgacaccaa taaccgtgta tggcagtgcg aataaaatcg
     3541 taaatggtgc aagggcccct ttgaatgtca gaacaagtac gagatagacg ataatgattg
     3601 ccgctaacat cgctatcatc aattgtgaaa aggcctcttg aatatcctca ttcgtcccac
     3661 ctaatgacgt atgcacatca cttggtttat caagttcatt taactgtttc atcacttttt
     3721 gagaaatcga gccaacatct tcaccagaaa tcgtcgccga aacagtgctg acataatcgc
     3781 cacctttttt cacgagtgca ttcggtgtgg atgtcgtttt taacgtcgca atgtcactca
     3841 acttacgatt atccccagtt ggagaaggaa ccggcgtatt ttctaacttt tctttcgtcc
     3901 aatccgtgtc tttttcttgt tggacaacga catcataagt ttggttttga tctttcactt
     3961 tcgaaaccgt catatctgga atgttttgat tgagcatcat cgccagttga cccgctgtca
     4021 tccctgtttt tgctgcttca tttgggttca ctttcacttc atattgttga tacgtttctg
     4081 ttaaatccga cttcacattc gttaaaccag gcacttgaga cattttttgt tgaatcgcct
     4141 tcactgtgcc ttcaatcgct gcagtagacg gtcctgtcac ttctacattt aacgtgttag
     4201 acgtcgcccc tgtacccata tctaagtttt tccactcacc gtcatgatga tatgtcttaa
     4261 tatgtttcaa cacgcgttca ggttcttgat caaagttcgg tgtatcagaa tcgtactcga
     4321 ccattaacgc catgttattc gtagagccag tggggtcaac aggtgatgcg ccacccacgg
     4381 aatattgcac gtgacgaaca tgttgattgc cgagcaaata tttttcgact tcttctgcat
     4441 gtgataatac tttttgcttc gtttcacctg gttttggtgt ataggttaat gccataaact
     4501 tatcttcacc cgtactaatg aagctcgttc caattttcat actccctaat gcaatactac
     4561 caattaaaat ggctgtactt aaaatgatga cagtccattt atggtttaaa ctccaattca
     4621 atacttttcg atatcctcgt ccaactgtac cgagctcaga tttcggttta cgtttcaagc
     4681 catgtttaaa gaaaatggaa ccgagtactg gcacgattgt aattgataca agtaatgaag
     4741 caagtaaact aaacgtaatc gcgtaagcaa acggtctaaa catttcgcca accgaacctg
     4801 tcacaaatgc aagtggtgca aatacgacga ttgtcactaa tgtggatgac ataatcggaa
     4861 tgaacacttc tttcgtcgca gatacgatga gcccatctcc tgataatgat tcgtcttgac
     4921 gtgacagtcg gcgatagata ttttcgatga cgacaataga atcatcaatg acacgaccaa
     4981 tcgcaactgt aagcgcacct aatgtcagta tgtttaatga gacatctgtc agttttaacg
     5041 ccaccattgc gatgagtaaa gacaatggaa tcgaaacaat cgaaatcgct gtcatacgta
     5101 catttcttaa gaacaacatg atgacaatca ctgccacgat agatccgagg agcgcttttt
     5161 caatcatagt atttagtgaa tctttaatcg gcttagaagt atccataatt ttgaccgatt
     5221 taagttctgg atgtgctttc acgaaatctt gtatcgtttg gtttacatcg ttagcgactg
     5281 caaccgtatt ggccccttgc gttttaacga tttgaacatc gacagcatct tgaccgttcg
     5341 ttctagaaat cgattcacgc tcatctgata acttcacttc ggcaagatca cttaacgcaa
     5401 ccgcttgtgc actttgtgga ttgtttaaag atacttgacc tgacgttgca tgccccctct
     5461 ctgatgcacc cccgtcttgt tgtccttgtg tgctattacc tgaagactgt gatgcaagtg
     5521 ctaacggaat ttgcatattt ttgagtgcgt caacggaagc atattgccca tcaacgacga
     5581 cagacttttc tgtatcacca aattggaata aacctaatgg agattctttt gtcgcacctt
     5641 caatatagtc agacacttgt tttgcattga gccctgcctt ttggagtttc gcatcattga
     5701 actttatcgt cactttacgc tcgatttgcc cattcactgt ggcacgttgc accccgtcaa
     5761 tcatttgtaa tttcggaatc aactgttctt taacagcttt ggtacttact ttcacatcgt
     5821 ctttgtcatg taaaatcgaa tacgccacga cagggaaagc attcattgaa ttacgtttaa
     5881 tgtctgacgt ttgtgcctcg tctggtaaac ccaccttttt cagcgctttt tcgatatctt
     5941 gttccgcttt atccatatcc gtactttcat caaaattgac cgtaaccatg gaggcgttag
     6001 ataaagattg tgttttaaca cttgtgaccc ctgccatccc ccgtatttct tcatcaatcg
     6061 ggtcactgat ttctttcatg acggtttcag aagtggcacc cggcatcggt gttgtaatcg
     6121 tcaacatcgg tggttcagta tcaggcaaca attctaacct cattttgaaa cttgcataga
     6181 cgcctccgag tatgacaagg aataccatca ataaaatggc aaacttgttc gataacgaga
     6241 aatcgattaa ttttttaacc acacgtatct ctccctttga aatgactttg ctacatcatt
     6301 atttcagttc gtaaaaatgt aacctttcca ttgaatatat atgatacaac gacacgtttc
     6361 gttctatcac acttaaaagg tgacacgaat aagcacctac gagatatgta aatgcataac
     6421 gtgccacctt ctctgttttc ctttgttgta cactttggaa ttacaccacg tttaacttat
     6481 ttatgcgttc ttttgccctt tacgttgttg tatcgatttg atttgacgca ccaatttaat
     6541 tttaagttgt gtcaattgcg gtttaaattg ttcgaccgct ttatacacaa tagggttgag
     6601 tacatagtca aattccccaa ttttctcgct caaacgtgta ccccacgcct ttttaaacgc
     6661 ccacaaaccg taatgacttg aatctttgtc tggattatga tctgtccctc caaaatcata
     6721 agtcgtcgca cctttttcac gcgcaaattg catcatttta aactgcatgt gatggttggg
     6781 taaaaagtca cgataatggt tagatgaagc accgtaaaga taatacgctt tgtggcccgc
     6841 aaacatcagt aatgcccctg ataaataaat gccctctgga tgcgtccgtt caagttgtgt
     6901 catatcgtca atgagtgctt ggtttttatt cattttttgc actgcatctt ttaacttatt
     6961 ttgaactttt ttattgtttt gatctttttc ggctaacgta tccatttcag tttgtaagtg
     7021 ttgttgttct acctttaact cggctaagac aggtgtcggt tcaagtttca ctaagaacaa
     7081 ttccgcgtca ccgtcgggat gaagcgcatc ataaatcgtt tcaaaataag aaacatcacg
     7141 tgttaagaag ccatcacgct cacctgtttc tttcattaaa tccgcaaata ttttcaagtc
     7201 ttcgcgacct ttacgttcca ctttcgttcc acgcttcaat gccagtctca cttttgagcg
     7261 attgcggttt tcaaagcttt gaattaacgc ttcatctgac tgattaattg gggtaatcat
     7321 cgtcatacgt ggttgaatgt aatctttagc caagccctct ttaaaccctt tatgtttgaa
     7381 gcccattttt aataaatctt gtacaactgt catcccttga tcaacttcta catctgggtc
     7441 aattttaatc gtgtacgctt tttcactttg agcaacttga atcgcttcgg atagtaacgc
     7501 cttcaccgcg acggtattcg tataatccac aacgaaaccg cgtgaagcat aacaaagcgt
     7561 aaaaggtgtg cgaggaatct ttttaaagag tagttgtccc acacctttca actcaccgtt
     7621 ttctcctaca gcaatacgtt tcgcatacca acctgttaat tttttcgtat cgccccattt
     7681 tgtcaattgt agtaaatcac cattcggatg cgctttaaca aatgcatcat gttcttgatc
     7741 ggttatattc atgcgtttca tttctcgttt aaaactcctt ttagttatcg tctactctta
     7801 ttttctagta taatcaatga cacatccgat tgaaacgtta cagaacagat gtattaatcc
     7861 aaactggagg tctcgttatg cgtcaattga ttttactctt actctctatc attaatatca
     7921 tctttatcgt ttacacattt gtatttcata tcggtatcga ctacttaagt ttacgcatta
     7981 tctttgtcgc gttttcatta gttgttggga tatacagtgt gctactccat gaaacgaaac
     8041 aacaactctt gctatcagtc atagaagcca tcattgcact gttgcatatt gtgctcatca
     8101 ttagtgccgt atacagcgtt gtttatgcgt gaggtggaat aaactgatat cttgcgcctc
     8161 ttgtacgaaa agcgataggt gcatcaatgg tttgatcgat aaattgaaca gcttctatcc
     8221 cgtcttcttt atcttccatc actttaaact tgattttttt cgcagggctt tggaggattg
     8281 tgtagcggtc tgaagattca acttcttcca tatcaaacca ttgcttccaa tgatccacca
     8341 ttgtttggcg ttgatatgta ttgactgtaa tcatatctaa agtcaaatgt tgatgaaaat
     8401 gctcttgtaa atcagcttct cgtgtttcat ctgacgcgtg ccactctata aaaaagggca
     8461 tgattacatc gaactgatgg ttggctacat acaacagtcg ccattgaatc gtttgtccct
     8521 ttttattctc tcttgtcatt tcaaccggcc ctaccgtttc aagccctcgc gcttcaaatt
     8581 gtacttttaa ttgttcaata tcgtgcgttc taaaacaaat ctttttaaat ccttgtcgat
     8641 aaccattttc cataatcgac gtcgcaaacg agtgcttacc gacatctgtt ttagactgtt
     8701 gtttcatttt cccttgatga tatatatcta tcaattcaat ataagataaa tcgatttgga
     8761 cgagacgatt ataagtccct aaattttcat gttgaccacc tgattgaatt tccaaatatt
     8821 tcccaggaaa ctcgaactga tttaatccat caatgtaatg aatcacgtga tcaaattcta
     8881 tatctatcat ttatgcgctc actcccaatt ctcatgccat aatattattt taccaaatat
     8941 ttgttgtgaa atctcgatat aacacgcact gcatttttgc tttgacaagc aggcatttat
     9001 ccaacaactt tcacatgaag tgttataata tgctttaaga acctattcag aaaggagtct
     9061 cgtatggaac cttcaatatt atttgatcat ttcaccaagc tttaccgtcc ctatattaaa
     9121 ctcgtccacc cattacttga tgaacaccaa ctctaccccg cacaatggtt agtgatgaaa
     9181 gatatcgcaa tcaatcctgg tacaacactc gttcaaattt caaaacgccg ttcgattgaa
     9241 aaaccgacga cgcgaaaaat tttaaaagcg ttagatgcac aaggttggtt attgattcgc
     9301 ccaggtgaaa tggataagcg agaaaagcat ctctatttat ctgaatccgg tcaagcgatc
     9361 catcaaaagt taaagttaca gattggccaa cttcagcaac aagtaatcga accgctccaa
     9421 ctttcggacg atgagattgc acgtgcaaca gatattttag aacagttgta tcagtcgtta
     9481 ctcgcacaac ttcaaaatga tgaaatgtaa tatgactttg gaatgagata caaaaatttt
     9541 tgatgctatt gatgcagaat tcttgttaaa cttgccctca ttattgaatt caagaagtga
     9601 ctgctagccg tatacacgaa ttcccacagg agtctcagcc ttccggggaa tctcacatta
     9661 aatccaggaa agtaagggca actttatgaa accatgaaaa acaatagcat caattttttt
     9721 gtcttattca tcctcatttt cgatgagttg attagtataa agtaaaaaca aaaaagtagc
     9781 tagctatcgg gtaaacttga tgtctcatct tttttcaacg gcttagatga tgtcataccc
     9841 tttctttttt tgctgtttat cgaaaatcgt cattatttta acccctcaac gccatcgtct
     9901 tttcacgcta ttgtcttttt tatcaattca tcaaattttt acaatattgt tatagttgtt
     9961 ttggtatact taacgcgtaa acaatatttt taaggaggca atctattgaa aagcaaatta
    10021 ataacttcaa ctttagtttt aggtcttctc acgacaggca caatattcca agatttggct
    10081 gcacaagctg aaacgacatc ctcaacactg attcatgata ttcaaggtgc gggtcataca
    10141 tcacctttga aagatcaacg cgttgaaaaa gtaccaggta ttgtgactta tatttataag
    10201 gccaacaact cctattattt ccatctccaa acaccagacg cgcaaaaaga caacaatcct
    10261 gcaacttctg aaggcattat cgtctttgcc ggtaaagaga aacctaacgt taaagtcggt
    10321 gatctgattc atgtttcagg tacggtccgc gaatatgcga ttgaaggtta cgcggaaaaa
    10381 caacaaacag atttaccatt gactgaaatt gatgcacgtc cagatcaagc gggccaaatc
    10441 accgttcaaa aaacgcatca acctttacct caaccggtaa aaatcaaaaa aatcccgcaa
    10501 caaatcgctt ctcctcaaca tttttctgtt ttcaaaccgg atacatatgc agttgatttt
    10561 tgggaagctt tagaaggcat gcgtgtagag tttggcgatg tccgcagtgt tggtcctcaa
    10621 gaccacggcg aagtgtttac agtgctcaat caaactcgtc gagaaacgaa aaatggtggt
    10681 atattattaa agcctgataa tgccaatggt caacgtatcg cctttaaaat gaatgatgac
    10741 aacaagcgcg cacaagattt taacattgtg acgggggatc gcttcaaagg gcctttaatt
    10801 ggttatgtga actacggttt tcaaaattat aaagtcaata tcgatttaaa agagatgcaa
    10861 caagcgtatg ttaaagggaa agcacaacct aaaggaacga cattgaaacc gtccgaaaat
    10921 aaactgactg tagcatcata caacttagaa aacttttcaa atgacgttaa aagttcaagt
    10981 gatgataagg cacagaagct cgcaaatggt atcgttaacc atatgaaaca acctgacatt
    11041 gtcggcgtca cagaggttca agataacaac ggaccgaata aaggcagttc tgatgcctct
    11101 gcttcatata aacgtctcat tcaagctatt aaagatgctg gtggtccgac atatcgttat
    11161 gtcaatatcg atcccgaaaa caatgtagat ggcggtcaac ctgatgctaa tattcgtgtc
    11221 ggctttttat acaatcctga gcgcgtaaca tttaatgacc acattccagc gggagatgcc
    11281 acaacgagcg tcgcgtatga aaacaaccaa cttacacgaa atcccggtcg tatcgcacct
    11341 caagatcctg cttttgaaga tgtacgtaaa tcattagctg ctcaatttga ctttaaaggt
    11401 caacaagtca ttgcgattgc taaccattgg aaatcaaaac gcggagatga tggtttattc
    11461 ggcagtcatc aaccggttcg attaacttcc gaaccacaac gcgtagaaat cgcacatcgt
    11521 attggtgaat ttacagcgca agttcaacaa caaaacccta acgccgccat tatttcagta
    11581 ggcgattata atgatttcca atggtcaaaa ccacttaaaa cttttgagtc atatggttta
    11641 acgaacaagg taaaagatgt acctaaaaac aagcgctatt catatgtcta tcaaggtaat
    11701 acgcaaacgc tcgatcacat tttagtatcg gaacatttaa aacgccagac gaaacttgat
    11761 atgattcacg taaatagcga cttcactgat atggctggcc gtgcaagtga tcacgaccca
    11821 atcctcgctc aaattgactt tactaagcaa attaacaagc agaaaaaaca gaagtaacca
    11881 ttgatgcaaa aaaagctggg acgatgaaat tcccagcttt ttctactatt tatatcaacg
    11941 gatgttctaa agtttatcca cctatataat tcatattaat cttcttctgc tgtctctttg
    12001 ctactgtttc tgctgttcgt tcatcagaat aacgatcgtc gcgaatatgc cacaatgctt
    12061 tcaattgtga caaaatttcg gcatcatcca tcccacttct caatagccct cgaatatcaa
    12121 agccgcttcc ggtactgaat aagcaaccat aaaatttacc atctgaggat agacgtgctc
    12181 gcgtacagct cgaacaaaat gaatccgata cacttgtaat cagtccaaac tgagcttgac
    12241 ttccgacatg gcgataatac tgtgcgactt caccataata tttcggagat accggttcaa
    12301 tgtcaaattc actcgcaatc atcgccaaca tctcatcttt agtgacaact ttactaaaat
    12361 cccaaccgtt atcattaccc acatccataa attcaataaa gcgaatcgtg acggctttat
    12421 ctttaaaata acggaccatt ggcaaaattt gatgatcgtt gacacctttt tgaacgacaa
    12481 cgttaatttt aactttcaaa ccaatactga tggcataatc gatttgttca agcactgtcg
    12541 tcgccttaat atcacggttg ttaatcgctt gaaatacacg atcttcaatt gcatctaaac
    12601 tgacattaat gcgacgtaac ccagcatcat acagtttttg accgtgcttt ttcaataata
    12661 agccattagt cgtcaagcct atatcttcaa tgccttcaat ctgtgtaatt tgggcgatta
    12721 attgatggag gtcacgacgt agtagcggtt caccacccgt aatcctcact tttttaacac
    12781 ctaattgtgc atataacttt gtgatacgta caatttcttc aaaagataac aattgatttt
    12841 tcggcaaaaa tacataatcg tcaccgaaaa tttcttttgg catgcaataa tcgcaacgaa
    12901 aattacatct atcagttacg gaaatgcgca aatcgcgaat gggtctgccc aatttatcta
    12961 gtatttggtc tgccatattg cgcctccttt tcttatttcg ctagttctgc ttctaatgct
    13021 gccaaatctt gttgataatt cacattttga taccaatagc gcggactccc aatcgtattc
    13081 gcctctaacc aatctgttga tacttgatca tacacatgtt tcatactcag atcatccgac
    13141 tgtaaaacat tttcaataat aggcaacaca cgtttatgat aaaaagcaat ggtcggtatc
    13201 ggacgtgcat catccataaa accggcgatg tctaaatgtt cttcaatgag atttgcaacc
    13261 ataaactgat acagatggct gattgctttt tgtgtgacca tcggcgtatc aacagaaatg
    13321 acaaaataaa gatcctcatc tgtatcacgg gacatcacac tataaatacc ggcgagtggt
    13381 cctttatctc ggtgtttcgg ttcatctaca acgaccgtgt catgttgaaa ttgagaaaat
    13441 agttgttcat tcgtactaat taaaatctca ttgaacatgt tcgtcgcttg taacgtttgg
    13501 acaagtttat gataaaacgt cgtcccatta attttcgcaa atgctttcgg tgagccaaat
    13561 ctctctgaat gcccacctgc gagtataata gctttcatga ctaatgttta acctccactg
    13621 actggcggaa tcagtgcaac cacgtcgtat ggctgaatga gatcttccgc gcgtgcaaac
    13681 tcttcattga ttgcaacttg aaattttttc ccttgaatga cgggataggt ttggtataaa
    13741 agtgttgtta aatcagcaac aggcaccgca taatcaaaat gaaatacatc ttctgagcga
    13801 ttcacaagtt ctttaatttc tgcaaagtat aacaccttca cgttgaaagt cctcctttat
    13861 tgacagcatc gtcgtgataa ccacgttgat gaccttgcca ttctgcgcca tcttcccaaa
    13921 tttctttttt ccaaattggg acgacctctt taatccgttc aatcgcatat tcatttgcag
    13981 cataggcatc tttacggtga ggtgatgata cgctaataca aactgcaata tcagaaattt
    14041 gaagcgcacc aatacgatga cctatcgcaa tgatggtacc aggccaacgc tccgttattt
    14101 catcaccaat ttgcgctagt ttcttttcag ccataggaac atacgcttca tattctaaat
    14161 actctgtgcg gacacctttc gtccattcac ggacatgccc tgtaaacaca accaccgcgc
    14221 cttgtttttc atttaatgtg tatgcgcggt atttttctgg ttctaacggt tgtgttgtca
    14281 cttcaaattg tttcaaccca atcacccttc gttcatttct atccactcag tgagccacgc
    14341 aaataacgca tgctcatctg acgttgtagc atctctttta attgcaaatt tcacattcga
    14401 caactgttga agttgcgcat attctgcttc attgcgatac acaatcactt tatcgtaatg
    14461 ttcatgtttg taaccttcaa cgaatatgat acttttttta atggtaacac attcatcaat
    14521 taaagtccgt aacggcattt catcagcact ttggacactt tcaatatact ggtggccttg
    14581 cacaatactt tgatccgctc cagcattaaa atggcgcata tgatccaaat ggtcagccgg
    14641 caacttaatg tcctctccag catgaccatg gtgtttgatc gttaccacag catagcctaa
    14701 acgtttcaca tatgccacta acttttccat aagcgtggtt ttaccaacat ctttaaaccc
    14761 taccacttgt ataatcataa gctactctca cgttgatacg cttctgatga tgttaatatc
    14821 acttgtacgt catgaccttg ttcaaatcca cgtgtacctc ctggtaaaac aatcatggca
    14881 ttactatgcg caatggacac aactgcacct gacttgttga aacctgatgg acgtactgtc
    14941 gcttcacgtc ctgtgagtac tacattggca cgaataaaac gtgtaaatgg attcgccttt
    15001 ttaaagtctt ccatcaacgt cgcacgcacc atacttggat aacatttttc agcatgcatc
    15061 atgtggtaca ttgctggttt aacaaataat tcaaagccag aataacaagc tgaaggattt
    15121 cccgacaagc cgaataaata tttgccttct gatactgcga cagtcgttac actacctggt
    15181 ctcatcgcaa ctttattaaa taacacatca gcgtttaatg ccttataaat atctggtaaa
    15241 taatcaaaat ctcctaccga cacaccacct gttgttatga caatatcgtg ttcatcaaat
    15301 gcttttttga cgacagctaa actactgtca aaatcatctt gttgaatttt atatagttca
    15361 gcttcaatac gttctttacg caataatgca tcaatcatcg gtccgtttga attacgaatt
    15421 ttacctggtt ctaacggagc atcgatatca acgagttcgc tacccgtcgc aatgatggct
    15481 actgtcggtt tttgaaatac aggaacgtca acataaccaa aagtggccag aactgcaaca
    15541 acgcccgcat taatccgttg acctttcgtt aaaacaacat cacccgtcgc agtttcttca
    15601 ccttttattg acacattttc gagtgactca aacggcttac gaatcgtaaa accttctgca
    15661 gtttccaccg tttgttcgag catgataacg gcatctgcac cttgtggcat ttcagcacct
    15721 gtcatgatac gtacggcttg tcctgcttca agttgcttcg tcgacacact acctgcaccg
    15781 atatggtcaa ttactttaaa ttggatacgg ttgtcactcg aagcaccgac agtatcgaca
    15841 cttctcaccg caaaaccatc gtaaggggat ttatcaaaac gcggaatatc atatgtggca
    15901 acgatatctt cggcgagtat gtaaccttca ctttcataga tgttcactgt cgtcgttttc
    15961 atctcgatat tttgtttcat aacacgttgt atcgcttccg acacggggat aggatgtctt
    16021 ttttctactg gcatgatgaa ccactcctaa caaaatgaaa aattcatgct atactatcct
    16081 tgcattcaag taaggaggaa taacatgtct gaatttacac accttaatgc acaaggtcat
    16141 gcaaaaatgg tagatgtttc tgacaaacaa gtcacgaaac gtacagccat cgcacgttca
    16201 agcattcaag ttaataccac gatttatgaa caaattacgc aaaatactaa caaaaaagga
    16261 aatgttttaa ataccgcaca aatcgcaggg attatggcag ctaaaaatac gtcgtctatt
    16321 attccaatgt gccatccgtt agcactgaca gggattgatg tcgattttga ttgggacact
    16381 tctgaaaagc aatacatttt gcacattaca acgacagtgt ctacaaacgg caaaaccggt
    16441 gtggaaatgg aagccttaac tgccgcttct gtcactgcgt taaccattta tgatatgtgt
    16501 aaagccgttg ataagggaat ggtcatcggt gaaacttacc tggttcaaaa aacgggcggt
    16561 aaatccgact tcaatcgcac atccgactaa atcgcatcca tctgtaaacg gacgggacat
    16621 cattactttt gcaactttac tatgctaaat gaaaagtgct atatggaatg aaaaatcaaa
    16681 tacgatatga ttaggctgaa atttttgtcg ttttttcttt tcaaaagttt gccctaattg
    16741 atttacagtc tttgatattc aattgctaaa atgggcgaga ttcttgatgg aatacgtatc
    16801 tatagtggca tttgtagcat tcaaaatagt tgtcaataag ggcatgcctt tatttattca
    16861 tttcataaac taaatgtgtg agttcgggta atatgagtcg attcagcgct aattttacag
    16921 cacctgttga tcctggcaag caaaagatta acgttcgttt cgctgtacct gcaacagctc
    16981 gagataacaa ggcacgtgtc ccgacatctt ctgtaaagct taaataacga aacaactcac
    17041 caaatccttc aatttcctta tctaataaag gtgtgactgc ttcaatcgtc acatctctcg
    17101 gtgcaattcc tgttccgcca gtcgtcacaa tgacatcgac atctcccgta agccattgtt
    17161 gcactgttga ctgaatggca gtcagttcat ctttaacaat catataatgt tgaatttcca
    17221 cttcaaaatc tgccgtttgt aataatgttt gaacgctttg accgccttta tctgtctcag
    17281 tcgttcgtgt atcggaaacg gtcaatactg cacaacggat aggtcgctct agtttaacgt
    17341 tcgtatgcat ggaatcactc cttcattagc cgaataattt atgtatcatc acttgtgctg
    17401 cgtcaatatc ttttaaaccg tgaatgagca gacgaccatc ttgaaaagcg acaatacgtg
    17461 aattttcaaa tttaaattgt aataaatagc cgttggactt gtagggcatc tctcgcgcat
    17521 ctaaaaatga ctttaatcgt tcaaacgtca gttctggatg atgatattgt atcgtatcgc
    17581 gaccacataa agcggcataa gtagacgttc gtgcatttaa atacggatag ctcggttgat
    17641 gaccacacgt tgggcaagct tcacgctgca accgtcgcat gtcaaacgca aaatgtgtcc
    17701 cctcccatat atcgccataa gttaatttag gttcaaatgg agtctcggtt aaaattttaa
    17761 aggcgtctct caactgaaaa cttgtcgtca tcgtgacagc tggttgaatg acccctaccg
    17821 tatcacaagt gaggttgaga gagggtattt gtggaactaa acattgaaaa caaggcgttt
    17881 gtccaggaat aaatggtgct gaaacatagg tactttgtac gacgccgcca taaatccaag
    17941 gcacccgata ataatacgct gcgtcattga tgagcatgcg tgtttcaaaa ttgtctgtcg
    18001 catccaaaat taaatcaact gtcggcacat gtgtttctaa aaaatcacga tccacatgtg
    18061 caatgtaagc ctcaatgtgt acatcacgac gtatcgcttg gagcatgtct tttgcggcca
    18121 tcactttcgg tacactttca tccgcatcac gttccgtaaa taacgtctgc cgttgtaaat
    18181 tagaatgctc gatatagtca cgatccacaa tgatgagctt cccgattcct gcgcgcacta
    18241 atccttccgc aagatgtgtg cctaatgcgc ccatacctac aatgagtata gctttcgcat
    18301 tgattttctg ttgccccccc ggccctattc ctttgtataa aacttgccta gaatatcgtt
    18361 cttcacccat catcataatc ctctccacaa tactattttc aattatacgg atttttcgaa
    18421 agggactcaa cggattgaaa cggctgattc ccctattcat cgcaaggtaa aacgatgaaa
    18481 tcgtaagtgc tgattcccta tatattaaag cagcgaacca aagtagttac aagcatgcct
    18541 ttgatccgct tttaaaatga tttttatttt ctactatgtt gatgtcttat ctgaacaact
    18601 gagcctcgca gttcctaaat ctaccacatt ttcacatgta cgacgttgac atcagggggt
    18661 ctcattctat cacaatgact tcatcagcta atgtgtctgc ctcccatttc gaatgtgtca
    18721 caaaaatgat tggaatatgc cactcatcaa aaacctgctt caccaagtcc atgctttctt
    18781 tgcgcgtccc ttcatccaaa cttgaaaatg gctcgtctaa taataatatt tctgggcgca
    18841 tacttaatgc tcttgctagt gcgacacgtt gcttttcccc acccgaacaa cgctctggat
    18901 aaacatgctt caaatgttcg atattcaaat gtttcatcaa atttgcaata tgtgtgttca
    18961 aacgtatcat aaaggtaatg ttgtccaaca cggtcatatg cggaaacaat tgatagtctt
    19021 gaaacaaata accgatatga cgttcgcgaa taggaacgtg tcgttgttgc tccgtatcag
    19081 tcaatacacg tccattaatt tcaattttgc cataatctgg attacaaata cctgcaatga
    19141 cgttcaataa agtcgttttc ccaatccctg acacaccttg aatagcataa attttgggtt
    19201 gattactttg aatttgaaga ccgatgtgac gttcgttaat ggtcatattg atttgaaggt
    19261 ttaacaatta atccacctca cgataacgct cttgattcat catattcatt gtacctatga
    19321 tactaattgc aaaagacact aaaacgagta cccatagcca tgcttgatgt tctctaccct
    19381 gttgaactag aaagtatatt tctaacggca acgtattggt tttaccagga atgtatcccg
    19441 caatcatgag ggtcgcccca aattcaccaa tcgcacgtgc aaaggcaagc atcgttcctg
    19501 aaatgatggc acgtttcgac aaaggtaacg tgattttgaa aaatattttt cgttcagaag
    19561 cccccatcgt tcgagcagta ttcagcatac gcgggttgat attgcgaaaa ccttggaccg
    19621 tatgttgata catgagcggg aaactgacga tgactgaggc cacaacagct ccaacccatg
    19681 tgaacacgac tttaatccct aaaatgtcag tgaggagatg ccccacagga tggtccaccg
    19741 aaaaaaacat gagtagtaaa aagcctaata cggtcggtgg taagacgata ggtagcagta
    19801 taatactttc aatcagatgt gtccatttcg attttctata atacatgata cgtgcgagtg
    19861 ttattccaag gataaatacg ataactgtac tcacgaaagc cactctaatg gatatccaaa
    19921 aaggcgttaa gtcaggcata acaatcacct atttttcaaa atgataatct tttaaaatac
    19981 gttgtgcagt gttacttttc ataaagtcat accaagcatt tgccgcttca gtatcagtca
    20041 cagtacccat gcgataaaca attggtgtct ttaatggcgc gtccaaaact ttttctacgc
    20101 catcatgcgg tgttttaccg acgtataaat ctgtttgata gacaaaaccg agctgtgcat
    20161 ttcctttctt gacatagttt aacacttctc gcacgtcttt cgcatacacg atatgatttt
    20221 caactgatga ccacttgttt tgatcttcta aataggtttt cgcatatttc cctgctggca
    20281 cggattttac ctcaccgatt gctagctgat cgttatctcc cagttgatca atgctttgaa
    20341 tgtcactgcc tttgcgacgg attaatacca atttgttatg tgcgtaatca tatgtatgtc
    20401 gcactttccc tttttctttt aacatatcga cgtctttcgt attcgctgac atgaacacgt
    20461 ccacaggcgc ccctttgtca atttgttcac gtaatgcacc agaaccacca taattaaatg
    20521 acacactaat gttgggatgt gctttgtgga actctttttc taatactttc gttacatctg
    20581 ttaaacttgc tgccgcagaa atgaccaatg gttgttcgga tgtcgatttt ttatcatccg
    20641 actgcgtacc tttttgccca cacgcagata aaatgacagc gaaaagcccg ataaccatta
    20701 acaagccaac ccaccttttc atatgtcgca cctcctcaat tgctttttta cgttaaaaat
    20761 acgctcgaaa tcagtatatc aaatttcgaa cgtattttga gtcgattcct atttagtttt
    20821 taacatttaa cgttgcaata aaacgttgaa aggcaacttg acccgcttca tctcttttaa
    20881 agacccctgc atcttgaagg acgcgttcaa atttataacc gacttcttga cgcacaatcg
    20941 cttcagcatc atccgtacca aagtcatact cttctttcat gtcttgtgcc catgcagtat
    21001 gcacaccaag gtctaccgtt tcatcgccat ttaaaaatgc aatcacattt tgcaattcat
    21061 tttttaaacg tcccggtaaa atcgctgttc ccatcacttc gattaaacca atgttctctt
    21121 ttttaatatg ttgaacatct tggtgcggat ggaatagacc gtccggaaac tcttctgtac
    21181 gctgattatc acgtaacacg atatccattt cgtatcggcc atcacggaat ctcgcaatcg
    21241 gtgtcaccgt atgatgacgt tctcctgaat cactatacgc tttcacttgc acactcgcat
    21301 cactgtaact ctcccattga tgacgtatcc attcgcttgc ctcaattaac tgttccgtat
    21361 ctgtcgccat taaacgaatg acactcatcg gccatttgac gataccagcg tgtacagttg
    21421 gaaagtcctt taattcaaag gcgcgttcga ttggtgccag tgccattgga aaagtatggc
    21481 gtcctgcttg ataatggttg tgcgataata tcgaaccacc aacaacagga atatcggcat
    21541 tcgatccaat cgtatagtgt ggaaattgct ttacgaaatc aagcaagttt tcaaatgttg
    21601 cttgattgat taacatcggt gtatgttcac gagataacaa aatgctatgc tcattaaaat
    21661 acagatatgg agaatattga aacccccatg cttcaccatt aatttgcatt tgcacaatac
    21721 gatgattcga acgtgccgca gaagtcatcg tgccatagta gccttcattt tccatacaaa
    21781 tcgcacactt tggataaaag gactcaggtg catttttctc tcgctcaatt tgttttgcat
    21841 ctttttcagg ttttgataaa ttgatcgtaa tctcaaaatc accatacgct gtcggcacgt
    21901 gataaacgat atttttcgca atcgcttctt ctttaatgta atgattcaga tggctcagtt
    21961 gataaaaata atctgtcgct gcttctggcg aaagttgata acgcttataa aattcacgat
    22021 tcactgtcga aggtttcggc gtgattaaat ccatcaaagt cgcttctaac tgttcacgcg
    22081 ctgacaaaat atcttcaaac gctcctcgct caattgcatc ttcaatgagt aaattcacga
    22141 tttcaatcgg cgcttgcggt tgaatgtcat gttcagtgtc taaaagtgca atatcgtctg
    22201 cctttaaacg tgacaaaatt tggttgacga cataaatacg gtcccccgct tcatagtcac
    22261 catacgcaat aatagcatct gcaaattgat acacatgtgc tgcgtttgcc ataatgaacc
    22321 tcctttagac attttcgtag ccattcgggt gtttttggtg ccattcccaa gcagtacgga
    22381 taatttcatg aatatcatca tgttgtggtt gccacttcaa taacgctttc gctttatcac
    22441 ttgaagcgac taatttactt ggatcacccg cacgtcttgg tgcaacaact gccggaatgt
    22501 ctcgacccgt cacttcgcgt gcagcattta aaatttcttt gactgagtat ccgtgatttg
    22561 tccctaaatt gaacgcacca ctttcaccac ccgcttttaa ataatcgtac gccaaaatat
    22621 gtgctgaaat taaatctgta acatgtaaat agtctcgaat tggcgttccg tctggtgtat
    22681 cgtaatcatc accaaacatt ttcaattcat cacgttgacc taatgcgact tgaaggacaa
    22741 caggaatgag gtgggtttct ggatgatgat cttcaccaat cgcaccgttt tctttagccc
    22801 ctgcaacatt aaagtaacgt aacgcagcgt agttcacacc atacgcttca tgacaccacc
    22861 gcatcatttt ttccatcaca agtttacttt caccgtaagg actcgttggt aatttttgtg
    22921 acgtttcatc aataggaact gcttcaggtt ccccgtaaac tgcagctgtt gaactaaaaa
    22981 taatatgttg aacatcatgt tctcgcatca cttcaagtaa cacttgcaat ccataaacat
    23041 tgttgttgaa atattcaagt ggatattcta ctgattcacc gactaacgaa taggcacaga
    23101 aatggaacac gccctcaatg tcctcttttt cgaaaacgtc atttaaaaat tcgcgattac
    23161 ggacgtcccc ttcataaaaa cgcgcatctg catgaaccgc ttcacgatgt cctttgacta
    23221 aattatcaac gacaacgaca tcataaccgg cttcaactaa ttgatcgaca cagtggcttc
    23281 cgatataacc cgcaccacct aatacaagca tagacatact ccatacactc ctttattttt
    23341 cctctaaagt acgtacaccg tttgcgatat ctacatgata gaacgacggt gcatacccta
    23401 ccgtttccgt atatgcttta gtcacctttg cttcgaggtc agcaatttta tctttgtgta
    23461 ctagcgcaat cgcacatcct gcaaagcctg cacctgtcat acgtgcccct aacacaccgt
    23521 cgacttgttg tgccgcttct gctaatgtat ctaactctaa tcctgtcact tcataatcat
    23581 cttttagtga cgcatgagac gcatttaaca attgaccaaa cgcttcgaaa tcatgtgctt
    23641 gtaatacttc gtacgctttt tttgtacgtt cattttctga aatggcatgt ttcgcgcggc
    23701 gtcgaagcac atcatcatca attttgtctc catatttttc aaattgtgct actgaaatct
    23761 cacctagtga ttgcacatca agataatttt gtaattgagc taatgcacgc tcacattcac
    23821 ttcgacgttc gttatatttc gactctgcaa gttctcggcg tttgtttgta ttcataatcg
    23881 agattttgta atcaccaaac tctgtcggta cgtagtgata ctctaacgta ttcgtatcta
    23941 acaaaatcgc atggtccttt ttaccaaatc cgacaataaa ttgatccata atccctgaat
    24001 tcacaccgat aaattcattt tcgacacgtt gtcccatttt cacgagttca aggcgctcca
    24061 tttcaatacc gaataaagtc gtcacaaggt gtcctgttaa taactcgata gacgcagatg
    24121 atgataaact tgcgccattc gggatgttac cttcaacaac gatgtcaaag ccacggttaa
    24181 tctccggaaa ttgctcaact aaataacgaa tcattccttt tggatagttc gcccactgat
    24241 gttcagcatt gtaatctaaa tggtctagat cgaacgccat cacacctgct gattcaaaat
    24301 tcactgagta aagttgaatc ttacggtcgt cacgtaaacg cccaacacca tatgttccta
    24361 attcgattgc tgctggaaat acaaagccac cattgtaatc tgtatgttcg ccaattaaat
    24421 tgatacgccc tggtgcaaaa gctgacaatg ttggttctcc gttaaaaata tttttaaatg
    24481 tttgagttag gttttgcata tctcacaccc caaagtcttt atagtaaaca acaaatacag
    24541 tttactgttt atccatttga ctgtcaactg agaccgcttt caaaaaactt tcccgatagt
    24601 ttaaatacgt attcaactgc atatgaatcg cgacttggcg ttgtcctttc atttgatctt
    24661 gtgctaaacg caccgcttga cgaccaaact cctcaatagg aatacgaacg cttgaaatca
    24721 tcggcgctgt atattgcgtt atttcagaat cattaaagct gactagttgt acgtcttcag
    24781 gtacacgtat ttgcgcttgt tgtaaccctt gcaatacgcc tactgcaagc acatcattgc
    24841 cagtaatgac gacttgtggt agcgcgccag actgtgcaat tcgttgccct atttctaggc
    24901 cattgtgacg ctcccaattt gacggataat aaagttcttc tgcatttgtt tgtgcacacc
    24961 aatcaatata ggcgcgttgt ctcgcatcag caaccgtatc atgcgtttga cccacatcac
    25021 gcacctttgt ttctccacca acgtatgcca ctttgccgac atgttgctgt tgaagtgatt
    25081 cgagtaacac ttgcatgctg tcatataaat cagaagaaac cgcatcgata tggttcggtg
    25141 catcgatttg attaattaaa ataagccgtg cattgtatgt ataaagctgt tgaatcactg
    25201 attgtttaaa tggtccaatg acaattacag accccgcctt ttccacttgt tgcagttgtt
    25261 caatcgacgt caatgtattc gttcgaatcg ttttcttcag cgttaaattc aaatgcttca
    25321 cttctttttc aatcgctaat cggagttctc gataatacgg gtcaatcatt tctttttctt
    25381 ttgacgcatg tgtcacaatt tggatttgcc gtgtcagacg cttttgtttt gtataattac
    25441 gtgcattggc aatttcgata atgcgctgtc tcgtctttgt tgcaacagaa agcgaaggat
    25501 cctcattcaa tacacgcgac accgtaccag gacttacacc tgcctctttc gcaatctctc
    25561 taatactcgc catcattcaa cctactctct tcatttgttt actacagttt acttcttttg
    25621 ttttttcttt tcaactctct tcatatttca aattctgtta atatcattgc agaaagttta
    25681 aaattgaaat atacataaaa gcatttgtac gttttttgaa aggaggttgt accattgagt
    25741 cctgacttta aaacgaacca accgattgta cgttttgaaa atggtgtttt atttgaaaca
    25801 gaagatgatt atgtgacaga ggtgccgctc acaatcatgg tgaaccgaga agaatttgcg
    25861 acagtcattt gtagccccaa tcaattggaa gaactagtgc tcggatttct cgcttctgaa
    25921 ggggtcattt taaaacgaga tgagttaaaa tcgcttgaaa ttgatgaacg gcgtgggtat
    25981 gcacacgtag aaatcacatc gtctatacat gatcgtgtgc aactctcaac gaaacgcctt
    26041 gtcgcttcat gttgtgggaa gagccgagag ttttatttcc aaaacgatgc cgccattgcg
    26101 aaaacatcaa tgtccaacct tcaattgaca ccttctcaaa ttttaagcat gatggcacgt
    26161 ttacaagcgc aaagtcgtgt ctttaaagca acagggggct tacataacgc agccattagt
    26221 gacggcaatg cattttacat tcatcgtcaa gatatagggc ggcataatgc actcgataaa
    26281 ctttacggct actgtattca acgacatatt ggggtgcggg ataaggtact catttttagc
    26341 gggcgtatct cctcagaaat tttaatcaaa gccgctaaaa tcggtgtcgg tatgattatt
    26401 tctaaatctg ctccgacgac attagcagtg caacttgccc atgatctaaa cattactgca
    26461 atcggtttcg tgcgtgacga ttactttaac atttacagtc atccagaacg tgtcaaacaa
    26521 gcagaaatgt aaaaaacagg cgctgatgag agctgtctca ccatccgcct gtttattttc
    26581 atttctgttg tcatgtgcga gtacccccat caatacgata ctgaaactgt taattccttc
    26641 agggcactat actgaaaact aacaaatgta taaccttgtt tcatatacat ttctctcgct
    26701 gtatcttcag catcagcaac taaaatgacc ggacgttcac gcgcgatttc ccccataaac
    26761 gcctgcatcc ttgagcccac gccacgtcca cgcgctgctt cagctactgc aaaaccatcc
    26821 agttccaccg ttcgctccgt ttcaatcaca ttcataatgc caacaggttg tgcattttca
    26881 taagcgatat aaggttggag cgcacgcgtg tcttttttca aattcgttag caatgcctgc
    26941 gcactttctt taatataatc tgcgccaaat tgaatagaga gtggctcata gacgtgcatg
    27001 taatctgcca tgttctttat tgtcacaggt tctatctcaa gactcggtcc agtcaactga
    27061 cgtaaatctg ctgcctcaat catatacagc tcaagattac cgacttgaaa accttcagca
    27121 cgtaaaagtt gcatgatatc tatgttcggt ttgacgtttt ctggaaattc aaatttgaga
    27181 tgtgtcaaca ctccatggtc ggcatgaagt gattgttgcc gtttcatatc tgctttaaac
    27241 tgagtcacat ccggcatttg atgatatacc cacttattat tatcataagt cagaggtgtc
    27301 gttggcgtca tataaatcgt tacgtcgtca tctttagaat aaatatcgcc ttcactgtaa
    27361 atatcactca tctgaacttc catttacatc ccctactttc aaggtttatt ttgctaattg
    27421 ttgcatgatt ctcgacacca caggattatt aaacagtgcg attgcaatga gtgatgctat
    27481 agctgcttta actaagtcac ccggtaaaaa tgttaatgat aaatagatcg ctttagacaa
    27541 tggcatatga atcacaaagc ccatcacgat ggcaccgact aagtctaata acaccacccc
    27601 gaagataaca ataatcgcaa aagtacgttt aaaatctaat gtttcaaaat atttatcacg
    27661 catccaacca attaaaaatg cggcgatagg atacatgatt aaaaagccga cactcggtcc
    27721 aacgaagaca ccataaccac cacgtccgcc tgaaagcaat ggcgcaccca tgaatacaag
    27781 taataaaaat acgataacac ttaatgttcc ataacggcgt cctaacaaaa tacctgccaa
    27841 aaagatccca acgttttgga gcacaatcgg tacagggata aatggtaaag gaatagctgg
    27901 aataaaaccc atgaccgcga taatggcagt cattaatgct gtataaacta aaaatttcgt
    27961 gttcaaaatc tttttcctcc taaaaatgat aaaaaacatt tcattccaga ttatagcatt
    28021 aatgtaaata cgatttctat acttgtttac aattcagcaa ctgcaccgag caatgcggca
    28081 tgattttgta attgtgcgac ttcaactttg gcatgaccgt aatcttcagg taaatatcgt
    28141 ttcaactccg gcaaaatata acgtaataac acgtcacctt gtgcagaaac tccgccacca
    28201 ataataatca attccggatc ataaacaatt tgaatttccg caatacctcg tgccacttca
    28261 cgcgcccatt gctgaatata atgtcgtgct gtggcgtctc cattctccgc ttcttcaaac
    28321 agttgctgaa tattttgatg cggatagttt tctctcatta acaattgttt taacgcttca
    28381 gttgaggccc gctgttcata ttgtgtcttc gtttctggat cgtataataa ataaccaatt
    28441 tgatttggac gatgacgtat gcccgttaat aatccgacat tgcgttgata ataactgccg
    28501 ccaatgcctg tacctaaagt taaacaaaac gcactctcat aatccacttc tctttcatcc
    28561 aactccccta acaatgctgc atcgacatcg ttatagacga cgagctcttg aacataggca
    28621 cttagtttat ctacaaagtt tgtgcctgta taattcaaaa tattggggtt ggcgtaagca
    28681 atcgtacgcg cctttctatc tacggccccc gctgttgaaa tacctactgc gaccgcttgt
    28741 agttgatgtt cttgaatata acgttgtaac cttgcctcaa cataattaat aatggcgtca
    28801 ttttcattaa cgggtgtacg cactttatca taatcttgta attgtcgatt ttcatcaata
    28861 atggctgact taatataagt tcctccaatg tcaaaagcta tctttttcat aaaactctgc
    28921 ccctctcatg agatgttgcg ttaacaatgc cttagccaac gaaaaatttc catccttcaa
    28981 tgcttcataa atattgcgat gttctgtcat actccgcaca ttttcttcgt gtgatgtttc
    29041 gataggggtt tgataaaaat acgcttgcac cacggcactc atttgttgaa ataatgatga
    29101 gtccactgca gtgagtatac tttcatgaaa tttttgatca gcagatacat taaacgcttg
    29161 cacatcatcc acaagtgact ccgctattga agttaatggt gcctgtttac gttcaataat
    29221 atcaatcgct gccaattcga aagtcagccg taacatcatt aaatctttta aattaccatg
    29281 agagacttga aaactaaata aaaacccttc aatcagtggc gtaatatctt gtgctttcac
    29341 taatgtgcct cgcccttgta cactttcagt cacaccagtg ttttcgagat aacttaaagc
    29401 ctctcgcact acagagcgac tcacttgata cgactcagct aatttgcgtt cagttggtaa
    29461 tttatcccct acctgtaatg actctgctat aatataatcc ttaatctttt gtacaactgt
    29521 ttgctttaaa cttttaccag aacgacttaa catttctgcc atgctcctta ctaactcctt
    29581 gtgtacagtt tagtacagtt taacataatt gatgagacac gttgtaaaaa tattgacctc
    29641 ttcattgata acgcttacaa ttagattata aattggtcag accaatatta caaacagatg
    29701 atttattgga gggtgtacca tgcatgaaaa tttaaaaggt ttatatgcag ctttactcgt
    29761 cccatttgat gaaaacggac aagtgaaaga acaaggttta agagcgatta tccgtaacgc
    29821 gattgacgaa caacagttag atggcttata tgttaacgga agctcaggcg aaaacttttt
    29881 aatgaatacc gaacaaaaga aagaagtttt ccgcattacg aaagatgaag caaaagacga
    29941 tattcgctta attgcacaag tcggttcatt agatttaaac gaagcgattg aattgggtca
    30001 atatgcgaca gaactcggtt atgattcatt atcagcagtt acaccatttt actatccatt
    30061 cacgtttgaa gaaattcgtg actattattt cgctattatt gaagcgactc aaaacaatat
    30121 gattgtgtac tctattcctg gattaactgg tgtaaatatt tcaatccaac aatttgagga
    30181 gcttttccaa aacgataaag taatcggcgt caaatataca gcacctgatt tttatttact
    30241 cgaacgctta cgtcaagctt tcccagataa gttgattttc tctggttttg atgaaatgct
    30301 cgtacaagct gcgatttcag gcgttgatgg cgcaatcggc tcgacgttca atgtcaatgg
    30361 tcgtcgcatt cgtcaaattt ttgaacatgc tcaaaatggt tcggttgaag aggcttatcg
    30421 cattcaacat gacacgaatg atattatcga aacggtgctg agcatgggct tatatccaac
    30481 attgaaagcc attttagctg aaaaagggat tgatacaggt gtgccaaaag caccattcca
    30541 tccgtttaac gaagcacatc gcgacgcatt gaaaacattg atcaaccaat atcaacttta
    30601 agataatgag actttgaatt aaaaagagtg aagtactaac gataaataga gacagagtta
    30661 tgcttcactc ttttactttg ctatatattg taagcggttt ctaaaaaatc tttatattga
    30721 acattgaaag gggtttgttt ttatgggaac aattggcttt ggtttttgga actggattgc
    30781 tttaattcta tacttattaa tcatgttagg tgttggggcg tattttacga aacgtgcagg
    30841 aaaagatacc gatagttttt ttaaagccag tggccgtcta ccgtcatggg tcgttggatt
    30901 ttctatttat gcgacaactt taagtgcgat tacatttatg tcaacaccag aaaagtctta
    30961 tttaacggat tggtcttaca tagctggtaa catcgcaatt gttgctatta ttccgttact
    31021 cattcatttt tatattccat tctttaaaaa acttaaaatc acttcagctt atgaatattt
    31081 agaagcacgc ttcaaccctg cagtacgtgt gataggttct gtcctattta tattatttca
    31141 tttaggccgt gtagccattg tgatttattt accgacactc gcaattacag ccgtttccaa
    31201 tattaatcct tatttagtcg ctagccttgt cggagtttta tgtattattt atacgtttct
    31261 tggaggtttt gaaggggtcg tatggagtga ctttattcaa ggtgtgattt tattaggagg
    31321 cgcacttgtc attattatta ccggaattgt gcatatcgac ggtggatttg gtacggtttt
    31381 gaacgaagca gtgagtaacc ataaactcat cagcgcagac aactggaaaa tgaacgccgc
    31441 cgctgcagcc atcccaatca ttttcctcgg tagtattttt aataacttgc aacaatatac
    31501 agcaagtcaa gatgttgttc aacgttatca agcgtctgaa tctttaaaag aaacgtcaca
    31561 ttcgatttgg acaaatgggg tgttggctct catttcagca ccactctttt acggcatggg
    31621 aacggtactg tatgtttttt atgccactca tacagcacta ccgaaagatt ttaatacatc
    31681 atcaatcgtc ccttacttta tcttaactga aatgccacca ttcattgcgg gattgatgat
    31741 tgcagcaatt ttcgcggcag cacagtcaac gatttcatca agcttaaact ctattgcagc
    31801 ctgtttctca gtagatatta aacaacgctt ctttggaatt aaaagcgatg caactgaagt
    31861 gcgtatggcg cgtgtaacga ctgttgttac aggactcatt ggtatgctta tctcattata
    31921 tttaatcgcc gcagactcta atgacgtatg ggatcttttc ttattaatta cagggctatt
    31981 cggggtacca attgcaggca tctttgcggt cggtattttc acgaagcgta cacatggtgt
    32041 cggtgtcatt atcggtattt ttgtcgcagt catcgtcagt tatttcttac aaggacaagg
    32101 cattggtggt gcaggctcac cattctacat ctcaattatt gcctttatga cagcgtttat
    32161 cgttgcatat atcgcaagtc tcattatccc aacaccgaaa aaagatattt ctggacttac
    32221 aatttttgat aaacacggtg ccatcacata cgtgcgtaaa acaaaataat tcatctcaca
    32281 aaaaggtatt ccatttcttt tgagttgtgt actcaataga gtgagatacc tttttcattg
    32341 gtggttagac cataagagat aaaagaaagg aaaacttaat ctcccctcct catgcatagc
    32401 attcaatttg aaagcatcaa aacccaccat cactttcaac gctgtatcat ttaatcaaag
    32461 cgttggttag ttgaagcgag gaggtgggaa cgctcctttt ttctccactt attactacca
    32521 aaaagcggta ccactcaatt gagagtagca ccgctttctt attttgccga cccgtccgag
    32581 attcctgagg cattagctga aacggaaaat ccaattcggc ttcctcccta gtacattgaa
    32641 ttgagttgaa gtttcagcgc ctaggaacgc gagtcctaag gtcagcaata gctagaataa
    32701 cgactcatct taattcgttg gtaacgctaa aagttgtttc tttaaatcct tacgagtgac
    32761 atctaatgta tatggatcgt tataccaata cacacttgaa tctacattaa acgcatattt
    32821 gttttgtacc gcttctaaat tttgccacat tgctgttttt tggaattcag gttgtgcggc
    32881 atctttcgct ttcgctgtaa taatcacatc tccagcatat ttgcccactt cttctttcgg
    32941 cacttctgtc caaccttctt tttttgttgc atcgtctaac gctttaggca tttgtaaacc
    33001 gaacgcttgg taaagtactt cactaccgcg tccccagttt ttaccataag cataaatttt
    33061 cttatcaaag tcttcaaaaa tcgttactga tgtgtcatca ccaagatgcg ctttaatatc
    33121 tttactatct tgtgcggttt gtttctccca atccgctttc cattttttca cttcatctga
    33181 cttaccgaca atgtcaccca ttgcttcttg ttgttcaaga taattgtatt tcgcatagtc
    33241 aaaagcaatc gttggtgcaa tttttttcaa tttatctgtg tttttgtctg tgttgtatgt
    33301 aatgatgagg tcaggcttta atgacgctac cttttctaca tcttctgccc ctactttatc
    33361 cacatcttta aattgtttcg caagcactgg actttggtca acttgatcgg acacaccgac
    33421 aatatttgca tcaagatatt ttaaaccacc cgcatacgtc ggtgccatga caacaattcg
    33481 ttttgggtct ttcggaatat cgattttttc ctcaccttta gctgttttga gattgaaagc
    33541 ttttgtttcc ttttcactac tttgattatc gttctggcca catgccgcca aaattaacat
    33601 acataccaat aacggtaata ataatctttt cattcatctt cctccaattg ataatgatta
    33661 tcattattat atagtgtaat gactttggaa tcaatctt
//
LOCUS       DANHOL010000007        33408 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.007, whole genome shotgun sequence.
ACCESSION   DANHOL010000007 DANHOL010000000
VERSION     DANHOL010000007.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 33408)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 33408)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..33408
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.007"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(187..666)
                     /gene="rlmH"
                     /locus_tag="PTC08_000213"
     CDS             complement(187..666)
                     /gene="rlmH"
                     /locus_tag="PTC08_000213"
                     /EC_number="2.1.1.177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020363758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (pseudouridine(1915)-N(3))-methyltransferase RlmH"
                     /protein_id="HDK5681750.1"
                     /translation="MKITILTVGKLKEKYWKLAIAEYTKRLSAYTKIEVVEVPDEKAP
                     ETMSAKEIEQVKEKEGQRILSKIKPQSIVITLEIAGKMLSSEDLAKTLDQRMTQGASD
                     FTFVIGGSHGLHEAVLRRSDFALSFSKMTFPHQMMRVILLEQVYRAFKIMRGEAYHK"
     gene            complement(1381..2163)
                     /locus_tag="PTC08_000214"
     CDS             complement(1381..2163)
                     /locus_tag="PTC08_000214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HDK5681751.1"
                     /translation="MSVLASGSTGNATYVESDKGSLLVDVGLTGKKMEALFEQIDRKI
                     SDLSGILVTHEHSDHIKGLGVLARKYGLPVYANEKTWTCIDKKDSKIPLDQKFVFNPH
                     ETKSIAGFDIESFNVSHDAIDPQFYIFHNNYKKFTMITDTGYVSERMKGMIRGSDAFM
                     FESNHDVDMLRMCRYPWKTKQRILSDMGHVSNEDAAHAMKDVITGQTKRIYLSHLSQD
                     NNMKDLARMSVSQILQAHDIDTVNEVKLCDTDKAIPTPIYTL"
     gene            complement(2186..2965)
                     /locus_tag="PTC08_000215"
     CDS             complement(2186..2965)
                     /locus_tag="PTC08_000215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system regulatory protein YycI"
                     /protein_id="HDK5681752.1"
                     /translation="MNWKRAKSLFIVVFLLVNICLIFVYNDKISKSKISDAEQQNSVN
                     FEQENIKLPKNMPDVSHVKMQLITARSKDFKDEAEKSGKAEARNNGHTLDKEMSESVN
                     VKLDPISHLKPYIDQNIYKGNEYQYHDTSDGKIKYEQTYKGFPIMNNNRAELTFDVKD
                     DTVKSYEQSAMEDILPSKGSNNEPRQVISAHKAIEALYYNQYLKHDQEVENIRLGYYT
                     VVKETNIQVLQANWEIKVKDANGTHTYYVEAISSNPQIIEQ"
     gene            complement(2962..4299)
                     /locus_tag="PTC08_000216"
     CDS             complement(2962..4299)
                     /locus_tag="PTC08_000216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5681753.1"
                     /translation="MRTRELIKSIVLALLVLSSIVLTVMIWNFSPDLTDADNVHTKDA
                     TEAIGTRYDKAFSQVVTPLQLVHIENDDVKGMPANKDVNALMTVFQKHRIIEVEDIQN
                     DDVVLLRNLSNHFVVLDYPSDIPLSMYLNEVIEIPAKVPTNFKFNRLILDVDDAQHVI
                     IYAMQPNHQRAIKLETNLNTKYVQQRIQKMKADLEPYSNVVTNRSTINKATYMYAVKA
                     PKNLKAYRTIFNRINVEDLNAILFDNTPIVRTTNSGNTTYNNNTGVVNYNANRETYDY
                     TNLSEDEHSTRNMNVNLPRAFDFINKHGGFTDDFRLFSANNDRGHIIYQMFLNGRPIF
                     YPNQLNEIRVLWGERGLYEYSRGLLKTNVTIDNGEKPESLPDLEDVRSVLASKGDIDF
                     TKVQQMVIGYRMNPIKGPENSIEIQEGSQFIPTWYIQYDHEWYEYKDGELIET"
     gene            complement(4289..6121)
                     /gene="walK"
                     /locus_tag="PTC08_000217"
     CDS             complement(4289..6121)
                     /gene="walK"
                     /locus_tag="PTC08_000217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell wall metabolism sensor histidine kinase
                     WalK"
                     /protein_id="HDK5681754.1"
                     /translation="MKWLKQFQSLHTKLVIVYVLLIIIGMQIIGLYFTNSLEKEMTET
                     FKTNISQNAKQIELGIEKIYADGNDSGNTQKDIQNLLNEYANRNEMIEIRFIDKDQII
                     IATSKQSNRTIINQKANDSSIQKALSLGQENSDTVLKDYGEGKQRVWIKNMPVVTGDG
                     MIGDIYIESNINQVYDQLSNINQIFIVGTGISLIITVILGFFIARTITKPITDMRNQT
                     VEMSKGNYTQRVKIYGNDEIGELALAFNNLSKRVQEAQANTESEKRRLDSVITHMSDG
                     VIATDRRGRVRIINDMALKMLGKSKEEVSGHFIFDVLDLQDEFSLEELNENNDSVLID
                     INEEEGIIARVNFSTIVQDTGFVTGYIAVLHDVTEQQQIERERREFVANVSHELRTPL
                     TSMNSYIEALEEGAWRDESIAPQFLSVTREETERMIRLVNDLLHLSKMDNETETITKE
                     IVDFNMFINKIINRHEMAAKDTTFVRDIPRETIFTEVDPDKMTQVFDNVITNAMKYSR
                     GEKRVEFHVKHNPVHSRLTIRIKDNGIGIPINKVDKIFDRFFRVDKARTRKMGGTGLG
                     LAISKEIVEAHNGRIWANSVEGQGTSIFITLPCEKIEEGDWDAN"
     gene            complement(6134..6835)
                     /locus_tag="PTC08_000218"
     CDS             complement(6134..6835)
                     /locus_tag="PTC08_000218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HDK5681755.1"
                     /translation="MARKVVVVDDEKPIADILEFNLKKEGYEVFVAYDGNDAVDLIYE
                     KEPDIVLLDIMLPGQDGMEVCREVRKKFEMPIIMLTAKDSEIDKVLGLELGADDYVTK
                     PFSTRELIARVKANLRRHYTQPSQENHMQTNEITIKDIVIYPDAYSIKKRGEDIDLTH
                     REFELFHYLSKHMGQVMTREHLLQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPDY
                     IVTRRGVGYFLQQHD"
     gene            complement(6986..7324)
                     /locus_tag="PTC08_000219"
     CDS             complement(6986..7324)
                     /locus_tag="PTC08_000219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SdpI family protein"
                     /protein_id="HDK5681756.1"
                     /translation="MILFSSCLFLFLLAIAFQHNPPQEINYFIGFRTKKSMKNQKNWE
                     IAQVAFAHQMKVISGYTALCSILLCIVDIVLIVLDNDVLFVASMVTQAIVLIGILLAV
                     YLKVNKKLDT"
     gene            complement(7763..7836)
                     /locus_tag="PTC08_000220"
     tRNA            complement(7763..7836)
                     /locus_tag="PTC08_000220"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(7800..7802),aa:Asp,seq:gtc)
     gene            complement(7843..7917)
                     /locus_tag="PTC08_000221"
     tRNA            complement(7843..7917)
                     /locus_tag="PTC08_000221"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(7882..7884),aa:Glu,seq:ttc)
     gene            8024..8917
                     /locus_tag="PTC08_000222"
     CDS             8024..8917
                     /locus_tag="PTC08_000222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YitT family protein"
                     /protein_id="HDK5681757.1"
                     /translation="MEIQAGSNVAYIKEKPKKPRQFFKRFFFITLGAVLMGIALELFL
                     VPNQLLDGGIVGISIILSHLLGFKLGIFIFILNLPFFFLGYKQIGKTFAISTLYAISI
                     LSVTTIVLHPIDPVINDKFLVTIFGGAVLGIGVGIVLRYGGSLDGTEILSILVHSKLP
                     FSVGEIVMFINFFIFGIAGFVFTWESALFSVVAYFIASKMIDTVLLGFDESKAVWVIS
                     DAYKDIGEAINSRLGRGVTYLKGEGAYTGEDKRVIFCVITRLEEAKLKDIVMEIDEKA
                     FLSIGNVSEVRGGNHRKRDIH"
     gene            complement(9136..10419)
                     /locus_tag="PTC08_000223"
     CDS             complement(9136..10419)
                     /locus_tag="PTC08_000223"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthase"
                     /protein_id="HDK5681758.1"
                     /translation="MSSIVVVGTQWGDEGKGKITDFLAEQADVIARFSGGNNAGHTIK
                     FDGETYKLHLVPSGIFYKDKLAVIGNGVVIDPVALLRELDGLNERGIATDNLRISNRA
                     HVILPYHIQQDELEEARRGDNKIGTTKKGIGPAYVDKAQRMGIRVADLLDKEVFEQRL
                     KENLEYKNDYFQGMFKQDAPSFEDIFETYYAAGQRLAPYVTDTAKVLDDAFVADERVL
                     FEGAQGVMLDIDHGTYPFVTSSNPVAGNVTVGAGVGPTNVSKVVGVCKAYTSRVGDGP
                     FPTELFDEKGHHIREVGREYGTTTGRPRRVGWFDSVVLRHSRRVSGITDLSINSIDVL
                     TGLDEVKICTAYELDGKEITEYPANLNDLKRCEPIFETLPGWTEDITGVRTMEELPDN
                     ARRYLERISELCNVHISIFSVGPDRNQTNVVEKLW"
     gene            complement(10791..12191)
                     /gene="dnaB"
                     /locus_tag="PTC08_000224"
     CDS             complement(10791..12191)
                     /gene="dnaB"
                     /locus_tag="PTC08_000224"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HDK5681759.1"
                     /translation="MDEMYEHNRMPHSHEAEQSVLGAIFLDPELMSSTQEILLPESFY
                     RGAHQHIFRAMMDLNEDGKDIDIVTVLDRLTQEGVVNEAGGPQYLAEITSNVPTTRNI
                     QYYTDVVFKNAVKRKLIHTADSIANDGYNDELDLDTVLNDAERRILELSSTRESDGFK
                     DIRDVLGQVYDNAEQLDQNSGQTPGIPTGYRDLDQMTAGFNRNDLIILAARPSVGKTA
                     FALNIAQKVATHEDQYTVGIFSLEMGADQLATRMICSSGNVDSNRLRTGTMTEEDWNR
                     FTVAVGKLSRTKIFIDDTPGVRITDIRSKCRRLKQEHGLDMIVIDYLQLIQGSGSRAS
                     DNRQQEVSEISRMLKAIARELECPVIALSQLSRGVEQRQDKRPMMSDIRESGSIEQDA
                     DIVAFLYRDDYYNRGDGDDDDDDGGFEPQTNDENGEIEIIIAKQRNGPTGTVKLHFMK
                     QYNKFTDIDYAHADMG"
     gene            complement(12652..13098)
                     /gene="rplI"
                     /locus_tag="PTC08_000225"
     CDS             complement(12652..13098)
                     /gene="rplI"
                     /locus_tag="PTC08_000225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HDK5681760.1"
                     /translation="MKVIFTQDVKGKGKQGEVKDVPVGYANNFLIKNGYAVEATPGNL
                     KQLEQKNKRIEKDKQQELEDAKALKERLAALEVEVKAKSGEGGKLFGSISTKQIAEAL
                     KAQHDIKIDKRKMELPHGIHALGYTNVPVKLHKEVEGTIRVHTVEQ"
     gene            complement(13095..15062)
                     /locus_tag="PTC08_000226"
     CDS             complement(13095..15062)
                     /locus_tag="PTC08_000226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DHH family phosphoesterase"
                     /protein_id="HDK5681761.1"
                     /translation="MNRHSMKKALIVPFLVITVTAIIIVGLSFFFNQWLAFIAAILLF
                     VMLIISVFIFRRFYRYLDRYLDDLSGKISIGSDRAVKTMPLGLIVLNENDQIEWVNPF
                     MSERIERNVISDPINEVYPNILKQLEKAKEIEIADGAYAYRVRYSEKEHILYFIDMTE
                     EATIQQAYDDQQPIIATLFLDNYDEITQNMNDTQRSEINSMVTRVISRWAQEHNVYFK
                     RYSSDQFIAYLNRRILRELEETKFDILSQLREKSVGYRAQLTLSIGVGEGSENLIDLG
                     ELSQSGLDLALGRGGDQVAIKNMNGNVRFYGGKTDPMEKRTRVRARVISHALKDILLE
                     GDKVIVMGHKRPDLDAIGAAIGVTRFAMMNNLEAYIVLNESDIDPTLRRVMDEIDEKP
                     ELKERFVTSDDAWNMMTSRTTLVVVDTHKPEMVIDENILNKANRKVVIDHHRRGESFI
                     SSPLLVYMEPYASSTAELVTELLEYQPTEQRLTRLESTVMYAGIIVDTRNFTLRTGSR
                     TFDAASYLRAHGADTILTQHFLKDDIETYINRSELIRTVKLQENGIAIAHGPDDKIYH
                     PVTVAQAADELLSLDGVEAAYVVARREENLIGMSARSLGEFNVQLTMEALGGGGHLTN
                     AATQLEGVTVEAAIEKLQQAINEQLDRSDES"
     gene            complement(15067..15978)
                     /locus_tag="PTC08_000227"
     CDS             complement(15067..15978)
                     /locus_tag="PTC08_000227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2232 domain-containing protein"
                     /protein_id="HDK5681762.1"
                     /translation="MFSKINPKATLISIVALLVVTLVIHVMPGLAIILACFSFIPGIV
                     LWYQSKHSFGLVALIAIILSTLTGNVFVMTFLIIILVLSMVISQLLIQRASKERILYL
                     TTFVASVLTLSAMMILQTLKKIPYADDLLQPYRAIMHQAAELENLDQQAQEILNNSIQ
                     QLAIQLPGMIVVAIAIYVFITLLIIFPILRKFKVATPVFRPLFFWQMKRSVFIMYALA
                     LLTTITTQPATTPNSIGINFQIVLGFLLVIQGLSFIHFFASIKRMPGALKVILVIVGV
                     LFYPMTRLIGLLDLGLNLKRMIKNDKR"
     gene            complement(16210..17175)
                     /locus_tag="PTC08_000228"
     CDS             complement(16210..17175)
                     /locus_tag="PTC08_000228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HDK5681763.1"
                     /translation="MVNYRVDTLALGAFTTESGETIENLKLQYEYVGYPGQPLVVVCH
                     ALTGNHLTYGTEDNPGWWREIIDGGYMPVHDYQFLTFNVIGSPFGSSSRLTDPNFPQK
                     LTLRDIVRALEKGIEALGHQKIDILIGGSLGGMQVMELLYNQKFEVKKAVILAATEKT
                     SSYSRAFNEIARQAIHLAGEEGLSIARQLGFLTYRSSKSYDARFTPDEVVLYQKHQGD
                     KFKEQFDLQCYLTLLDVLDSHDIHHGRDDVANVFQSLDTKVLTLGFTDDLLYPDDQVA
                     ALGCYFKYHRHFFVPDNVGHDGFLLNFNDWAPYLYHFLKVSRFRR"
     regulatory      complement(17259..17363)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00162"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="SAM riboswitch class I; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="S-adenosylmethionine"
                     /db_xref="RFAM:RF00162"
     gene            complement(17430..17759)
                     /locus_tag="PTC08_000229"
     CDS             complement(17430..17759)
                     /locus_tag="PTC08_000229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AzlD domain-containing protein"
                     /protein_id="HDK5681764.1"
                     /translation="MSMYVFWTIFLAGLGTLLIRITPFVMISRMELSDKVLKWLTFIP
                     ITLFTALVVDGFIQQQEGMMGYTLNWHFIIALIPTLIIAFWTRRLTITVIVGMVSVAL
                     LRIIGLF"
     gene            complement(17756..18448)
                     /locus_tag="PTC08_000230"
     CDS             complement(17756..18448)
                     /locus_tag="PTC08_000230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002498766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AzlC family ABC transporter permease"
                     /protein_id="HDK5681765.1"
                     /translation="MPYTTFKQGIRDCLPTVLGYAGVGFSFGIVSVASGFNILEILLL
                     SLLVYAGAAQFIIIALIAVQTPIWVIVLTAMIVNSRMFLLSMTLAPNFKHDHFIHRIG
                     VGSLLTDETFAVAITPYSKGHTMTYQWMYGLNLLAYLFWALVTVLGGLLGDFFQHPEV
                     FGLDYAITAMFIFLAISQFEGITKSKLRVYLYLVAIVIVMMLLLSLFLPSYLAILLAS
                     TLSATIGMVIDR"
     gene            complement(18765..20045)
                     /gene="serS"
                     /locus_tag="PTC08_000231"
     CDS             complement(18765..20045)
                     /gene="serS"
                     /locus_tag="PTC08_000231"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HDK5681766.1"
                     /translation="MLDIKLFRNEPERVKEKIALRQMDPSVVDEVLALDQQRRDYIQQ
                     TEELKAERNKASQQIAEKKRNKENADDAIKAQREVGEKIKNIDAQLKEADTKLNDILS
                     RIPNLIHDDVPEGEDDSDNVELKRWGTPREFDFEAKAHWDLVESLEMADFDRAARVSG
                     ARFVYLTNDGAKLERALMNFMITMHTTQHGYREMMVPQLVNAKAMYGTGQLPKFEEDL
                     FKVEKEGLYTIPTAEVPLTNYYRDEIVQPGVLPAKFTGQSACFRSEAGSAGRDTRGLI
                     RLHQFNKVEMVRIEKPEDSWDALEEMTSNAEAILEALNLPYRRVILCTGDIGFGASKT
                     YDLEVWLPSYSDYKEISSCSNCVDFQARRANIRFKRDKDAKPEYAHTLNGSGLAVGRT
                     FAAIVENYQNEDGTITVPEALVPFMGGQTVIKPL"
     gene            complement(20363..21865)
                     /gene="hutH"
                     /locus_tag="PTC08_000232"
     CDS             complement(20363..21865)
                     /gene="hutH"
                     /locus_tag="PTC08_000232"
                     /EC_number="4.3.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine ammonia-lyase"
                     /protein_id="HDK5681767.1"
                     /translation="MTLRLTGEQLTIEAIRQFLAYEDKVKVTEEAQVRVERSRAIVER
                     IIANKETVYGITTGFGLFSDVLIDQQKYNQLQVNLIRSHACGIGAPFASNVSLVMMIL
                     RLNTLLKGHSGVTMELVDQLVFFINQRIIPVIPQQGSLGASGDLAPLSHLTLALIGEG
                     KVEYQGEVLDSSEVLKQLNRKPLTLQAKEGLALINGTQAMTAQGVISWIETENLAYQA
                     EWIAALTHQALHGITDAYHEAVHQVRNFEEQTAVARRMSDWLEGSKLTTRQGEMRVQD
                     PYTLRCIPQIHGASFQVFQYVREKLEFEMNAANDNPLIFNEGDKTLVISGGNFHGQPV
                     AFALDFLKLGTSELANVAERRLERLVNPQLNGGLPAFLSPEPGLQSGAMIMQYAAASL
                     VSENKTLAHPASVDSIPSSANQEDHVSMGTIASRHGYQILENTRRVIAIEAIIASQAV
                     EIRGVEQLSPKTREQYEALRKIVPSIQEDRPFHQDIENVAKYLKNLAYQK"
     gene            22215..23030
                     /locus_tag="PTC08_000233"
     CDS             22215..23030
                     /locus_tag="PTC08_000233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-hydrate dehydratase"
                     /protein_id="HDK5681768.1"
                     /translation="MKTLSAVHIPKRKDDTHKGDYGRILLIGGNANLGGAIMLAARAC
                     VYSGSGLITVATHPTNHVALHSRCPEAMVIDINDTKKLTKMIEASDCILIGPGLGLDF
                     KGNNAMTFLLQNIQPHHTLIVDGDAISIVSKLKPEIPACNVIYTPHQKEWERLSGIPI
                     EEQTYETNRAAVDRLGGTVVLKKHGTEIYFENDAYKLEVGSPAMATGGMGDTLAGMIT
                     SFVGQFDNVIDAITSATYTHSYIGDKLSKDMYVVPPSKIIDEIPYAMKQLEEK"
     gene            complement(23282..25918)
                     /gene="gyrA"
                     /locus_tag="PTC08_000234"
     CDS             complement(23282..25918)
                     /gene="gyrA"
                     /locus_tag="PTC08_000234"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase subunit A"
                     /protein_id="HDK5681769.1"
                     /translation="MAETSESRINERNISKEMRESFLDYAMSVIVSRALPDVRDGLKP
                     VHRRILYGLNEQGMTPDKPYKKSARIVGDVMGKYHPHGDLSIYEAMVRMAQDFSYRYP
                     LVDGQGNFGSMDGDGAAAMRYTEARMTKLALELLRDINKDTIDFIDNYDGNEREPSVL
                     PSRFPNLLVNGASGIAVGMATNIPPHNMREVIDGVLSLSHNPDITISELMEDIQGPDF
                     PTAGLILGKSGIRRAYETGRGSVIMRAKAEIESRGGGRDRIVVTEIPFQVNKARMIEK
                     IAELVRDKKIDGITDLRDETSLRTGVRVVIDVRKDANASVILNNLYKQTPLQTSFGVN
                     MIALVNGRPQLINLKQALYHYLEHQKEVVRRRTEYNLRKAKDRAHILEGLRIALDHID
                     EIITIIRESETDKVAMESLQSRFALSERQAQAILDMRLRRLTGLERDKIEQEYNDLIA
                     YIAELEAILADEEKLLELVREELTEIKEKFGDDRRTEIQLGGIDQLEDEDLIPEEQIV
                     ITLSHNNYIKRLPASTYRAQNRGGRGVQGMNTLDDDFVSQLVTTSTHDHVLFFTNKGR
                     VYKLKGYEVPELSRQSKGIPIVNVIELDQDEVISTMIAVKDLDSEEDFLVFVTKKGLI
                     KRSALSNFNRINRNGKIAIKFRDDDELIAVRLTDGEKHILIGTAQASLIRFKETDVRA
                     MSRIAAGVKGIRLRDGDEVIGLDVADDDNQDEILVVTEKGYGKRTSIEDYRLSKRGGM
                     GVKTAKLTERNGRLVCITTVEGDEDLMVVTNQGVIIRMEVSNISVNGRMAQGVRLIRL
                     DEEQYVSTVAKVKKEPEDIEADEHTTASEASDDVEVVVDDVTPGDTIHTEAPEPEVSP
                     ERETLREDFMDRVNEDIENEDE"
     gene            complement(25954..27876)
                     /gene="gyrB"
                     /locus_tag="PTC08_000235"
     CDS             complement(25954..27876)
                     /gene="gyrB"
                     /locus_tag="PTC08_000235"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017636727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit B"
                     /protein_id="HDK5681770.1"
                     /translation="MADVNNSENYGASQIQVLEGLEAVRKRPGMYIGSTSERGLHHLV
                     WEIVDNSIDEALAGYADNIEVVIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVL
                     HAGGKFGGGGYKVSGGLHGVGSSVVNALSETLEVYVHRDGRIHHQAYHKGVPAFDLKQ
                     VGDTDQTGTVIRFKADGTIFQETTVYNYETLQKRIRELAFLNKGIRITLTDERDEENV
                     REDSYHYEGGIKSYVELINENKEPLHDEPVYVHQTRDDIEVEIALQYNSGFATNLLTY
                     ANNIHTYEGGTHEDGFKRALTRVLNNYGTQSKLIKEDKDRLSGEDTREGLTAVVSIKH
                     GDPQFEGQTKTKLGNSEVRQIVDRVFSELFERFLYEHPQVARIIVEKGIMASRARIAA
                     KKAREVTRRKSALDISSLPGKLADCSSKDPSESEIFLVEGDSAGGSTKSGRDSRTQAI
                     LPLRGKILNVEKARLDKILNNNEIRQMVTAFGTGIGGEFDISKARYHKIVIMTDADVD
                     GAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPLYKLTQGKQKYYVFNDRELDKLKEKLN
                     PTPKWSIARYKGLGEMNADQLWETTMNPENRAMLQVTLDDAIEADQTFEMLMGDVVEN
                     RRQFIEDNAVYANLDF"
     gene            complement(27899..29014)
                     /gene="recF"
                     /locus_tag="PTC08_000236"
     CDS             complement(27899..29014)
                     /gene="recF"
                     /locus_tag="PTC08_000236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA replication/repair protein RecF"
                     /protein_id="HDK5681771.1"
                     /translation="MKLKTLQLENYRNYEQISLDCHPEVNILIGENAQGKTNLLESIY
                     TLALAKSHRTTNDRELIRFNAEYAKIEGELNFRHGTMPLTMFITKKGKKVKVNHLEQS
                     RLTQYIGHLNVVLFAPEDLSIVKGAPQVRRRFIDMELGQISRLYLNDLSQYQRILKQR
                     NHYLKQLQLKKTQDTTMLEVLNHQFVEYAVKVTQRRQQFIKELELLAAPIHSGITNER
                     ETLTLQYLPSIKIEDVSQSEDVLIQQVLEDVQHHMEREIERGVSLYGPHRDDLAFQVN
                     GMDAQTYGSQGQQRTTALSIKLAEIELMNQEVGEYPILLLDDVLSELDDARQTHLLST
                     IQHKVQTFVTTTSVDGIDHEIMKDAKVYRITQGNIKQ"
     gene            complement(29011..29250)
                     /locus_tag="PTC08_000237"
     CDS             complement(29011..29250)
                     /locus_tag="PTC08_000237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016425730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S4 domain-containing protein YaaA"
                     /protein_id="HDK5681772.1"
                     /translation="MNGVMNLAEEVIVDGALTLGQFLNYEGIIESGGQAKWFLSEYEV
                     FLNGELETRRGKKLQDGDQLDIPEVGSYIIKFGEQ"
     gene            complement(29370..30059)
                     /locus_tag="PTC08_000238"
     CDS             complement(29370..30059)
                     /locus_tag="PTC08_000238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin domain-containing protein"
                     /protein_id="HDK5681773.1"
                     /translation="MLKKNKWLIIFIVVILVAGIFFSLATFKTSKKGNSGSGETLAAE
                     TQKQPTQGKKDSKVLLVEFGDFKCPYCGDFERNIKPKLEKEYIDNNKVEFRYVNVLIH
                     GEESELGAKAALAVNQYAPDKYWQFHHALFEQQPNNKDDVGSQHWLTDDLIQQQLQKL
                     DLSEQERKQITVAYRDEKGAIAKRAQEDHALAKKEEVPYVPALYVNGKQVEDETDFDA
                     IKNEIDKALEQ"
     gene            complement(30342..31475)
                     /gene="dnaN"
                     /locus_tag="PTC08_000239"
     CDS             complement(30342..31475)
                     /gene="dnaN"
                     /locus_tag="PTC08_000239"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000969809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HDK5681774.1"
                     /translation="MMEFSIQRDYFITQLNDTLKAISPRATLPILTGIKIDATNEGIV
                     LTGSDSEISIEITIPNQVDGQEIINVVEPGSVVLPGRFFVDIIKKLPGKEVKLSTNEQ
                     FQTLITSAHSEFNLSGLDPDQYPLLPQVSSDDALQLPVKVLKNIIAQTNFAVSTSETR
                     PVLTGVNWLIQQNELLCTATDSHRLAVRKLKLEEEIEDKNVIIPGKALAELNKIMTDS
                     EDHIDIFFASNQVLFRVGNVNFISRLLEGHYPDTSRLFPENYEIKLGLNNSDFYHAID
                     RASLLAREGGNNVIKLSTGDTQIELSSTSPEIGTVKEEVTANDVEGGNLKISFNSKYM
                     MDALKAIDNEEVEVEFFGTMKPFILKPKDDDTVTQLILPIRTY"
     gene            complement(31647..32990)
                     /gene="dnaA"
                     /locus_tag="PTC08_000240"
     CDS             complement(31647..32990)
                     /gene="dnaA"
                     /locus_tag="PTC08_000240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016898446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosomal replication initiator protein DnaA"
                     /protein_id="HDK5681775.1"
                     /translation="MSEQEIWDNVLSLCKENVTTVSYDTWLKDTTLYALSRDEAIVIA
                     AQPFIANWLTTNYTKLIKQYLEAVTQQTINTIKFITEEDLQELNVASSSHQSGHSTPV
                     EPVVSGEQFNTNNTFETFVIGPGNRFPHAASLAVAESPANAYNPLFIYGGVGLGKTHL
                     MHAIGHYVLENNPDAKVLYTSSEKFTNEFIQSIRNNDTESFREKYRNIDILLIDDIQF
                     IQKKEQTQEEFFHTFNDLHQNKKQIVISSDRPPKEISTLEERLKSRFQWGLIVDITPP
                     DFETRMAILQKKTEEENLDIPIESLTYIANQIQTNIRELEGALTRVLAYSKLQGKPIT
                     TELTADALKDIIQVTKTKKITIQDIQKVVGEYYGVRIEDFVAKKRTKSIAYPRQIAMY
                     LSRELTDFSLPKIGEEFGGRDHTTVIHAHDKIKKDIDNDPTLRQEIESLEKDIRS"
BASE COUNT         9579 a         7202 c         5841 g        10786 t
ORIGIN      
        1 aaacattctg tataaattgg ataaagtgtt tctaaattta actttgtatt agcaattctg
       61 gtatcaacgt ataaccttat ccattcttta gagccatata aaactactcc agttatcaat
      121 gctgtccata tattattttc cattaattca cctcatatta tattttttac aatctatttt
      181 ttagttttat ttgtggtacg cttcgccccg catgatctta aatgctctat acacctgctc
      241 caacaagatg acgcgcatca tttggtgtgg aaaggtcatt ttactaaacg acaacgcaaa
      301 atcactgcgt cgtaatacgg cctcgtgtag cccatgtgag ccgcctatga caaaggtgaa
      361 gtcacttgcg ccctgtgtca tgcgctgatc cagtgttttg gccaaatctt cagaactcaa
      421 cattttgcca gcgatttcta atgtgatgac gatgctctgt ggtttgattt tacttaagat
      481 ccgctgtcct tctttttctt tcacttgttc gatttctttt gcactcattg tttcgggtgc
      541 tttttcatct ggaacttcga ccacttctat tttggtgtat gcgctgagcc gtttggtgta
      601 ctctgcaatg gcgagtttcc aatatttttc ttttaatttc cctactgtca agattgttat
      661 tttcattttg ccctcctatg tgtatcaatc caaagttatc cacatgttat tcagttaccc
      721 acatctttat ctctattata ccgtttttgt atctcgtttt cacacagaaa tttaaaaatt
      781 gattactata tttggggata agtctgttga tatgtgggta actttgttag taaattggtt
      841 attaacatgt ggattgttta taacttgctt aatttgtgca catacatggg gataacccaa
      901 ttgattcgag tatttttata cacagttatt attgatatcc gtaaaaaaag aggtcagaca
      961 tctaactgtc caaacctctc aagtttattt taattttgct gaaacatgtc attgatagat
     1021 tacaagaatg atgatttagt tggacattca ttgttctttt ttgaatgcca atctgggcga
     1081 gactcctcag ggatatgtga aaactgttaa caagcttctt tttagcttaa cagtggttac
     1141 tgtttcacgc agtagctgtc tgacttctca atgttttact tttgagaagc ccagtcagcc
     1201 ttgcggagac agtactacga aatctttgtt gcacataaga attctgtaca gctctcgaaa
     1261 atccaattta gcttctttca ggtttccctt ccaatcaagc caaattgagt tgagtcaagt
     1321 cccctaggaa acgcgaaccc aagatagcta tcaaaaaaag taaattctga tacttccaac
     1381 ctacaatgta taaatcggtg ttgggatcgc tttatctgta tcacacagct tcacttcatt
     1441 cactgtatcg atatcatgcg cctgcaagat ttgactgaca ctcatacggg ccaagtcttt
     1501 catattattg tcttgtgata aatgagacaa ataaatgcgc ttcgtttgac ctgtaatcac
     1561 gtctttcatc gcgtgtgctg catcttcgtt tgaaacgtga cccatatcac tcagaatacg
     1621 ttgcttcgtc ttccatggat agcggcacat acgcaacata tcgacgtcgt gattgctctc
     1681 aaacatgaac gcatcactgc cacgaatcat ccctttcata cgctctgaca cgtaaccagt
     1741 atctgtaatc atcgtaaact ttttatagtt attatgaaaa atgtagaact gtgggtcaat
     1801 ggcgtcatga gacacgttaa atgattcaat atcaaatcct gcgatagatt tcgtttcatg
     1861 tggattgaat acaaactttt gatctagcgg aattttagag tcttttttat caatacacgt
     1921 ccatgttttt tcgttcgcat atacaggcaa gccatatttt ctcgcaagga cacctaagcc
     1981 tttaatatgg tcactatgtt catgtgtcac aagaatacca ctaagatctg aaatttttcg
     2041 gtcgatttgt tcgaacagtg cctccatttt tttacctgtg agtcctacat cgaccaacaa
     2101 actgccttta tcactttcta catatgtcgc attgccggta ctaccgcttg cgagtacact
     2161 cattcgtatc aagagaccac cctttctatt gttcaataat ttgtggattg gacgaaattg
     2221 cctctacata atacgtatgt gtgccatttg cgtctttcac tttaatttcc cagttggctt
     2281 gcaaaacttg aatattcgtc tctttgacca ctgtataata accgagtcgg atgttttcga
     2341 cttcttgatc atgttttaag tactgattat aataaagcgc ttcgatagct ttatgggcac
     2401 taatgacttg tctaggttca ttattcgacc ctttagacgg aaggatgtct tccattgcag
     2461 actgctcata cgatttaact gtatcgtctt tcacatcaaa agtcagttct gcacgattgt
     2521 tattcataat cgggaagcct ttatacgtct gttcgtattt aattttgcca tcgctcgtat
     2581 cgtgatattg atactcgttg cctttataga tattttgatc gatgtacggc ttcaaatgtg
     2641 aaatagggtc cagtttcaca ttgacacttt cactcatttc tttgtccaat gtgtgcccat
     2701 tatttcgtgc ttctgcttta ccactttttt ccgcttcatc tttaaagtct ttcgaacgtg
     2761 ccgtaatgag ctgcattttg acatggctca catcaggcat atttttcggc aatttgatat
     2821 tttcttgttc aaagttgacc gaattttgct gttctgcatc gctaattttt gatttactaa
     2881 ttttatcatt atacacaaaa attaaacaaa tattaacgag gagaaacacg acgatgaaca
     2941 atgattttgc acgtttccag ttcatgtctc aatcaactcc ccgtctttat attcgtacca
     3001 ctcgtgatca tattgaatat accacgtcgg tataaactgg ctgccttctt gtatttcgat
     3061 actattttcc ggtcctttaa ttggattcat gcgataaccg ataaccattt gttggacttt
     3121 ggtaaaatca atatcacctt tactagccaa tacagaacgc acgtcttcca aatctggtaa
     3181 cgactcaggt ttttcaccgt tatcaatcgt cacgttcgtt tttaataaac cgcgactgta
     3241 ttcatataac ccccgttcgc cccacaaaac acgaatttcg ttcaattgat tcggataaaa
     3301 gatgggacgt ccatttagaa acatttgata aataatatgg ccacggtcat tgttcgcact
     3361 aaataagcga aaatcatctg taaagccacc atgtttatta ataaaatcaa acgcacgtgg
     3421 caagttgaca ttcatattcc gcgtactatg ctcatcttct gacaaattgg tatagtcata
     3481 cgtttcacga ttcgcattgt agttcacgac gcctgtattg ttgttatagg tcgtgttccc
     3541 actattcgtt gtacgcacaa ttggcgtatt atcaaacaga attgcgttca aatcttctac
     3601 gttaatacga ttaaaaatag tccgatatgc ttttaagttt ttcggtgctt tcacggcata
     3661 catatacgtc gccttattaa tcgtactgcg gttcgtcaca acattggagt acggttccaa
     3721 gtccgctttc atcttctgaa tgcgctgttg tacatatttc gtattcaaat tcgtttctaa
     3781 cttaatcgcc cgttgatgat tcggctgcat ggcataaatg atcacatgtt gagcatcatc
     3841 gacatctaaa atcagtcggt taaatttaaa atttgtcggc actttcgcag ggatttcaat
     3901 gacttcattc aaatacatcg acagcgggat gtctgacggg tagtctaaca cgacgaaatg
     3961 attgctcaaa ttacgcaata acacgacatc gtcattttga atatcttcta cttcaataat
     4021 gcggtgtttt tgaaatacag tcattaatgc attcacatct ttattcgctg gcataccttt
     4081 cacatcatca ttttcgatat gcacgagctg cagaggcgtc accacctggc taaacgcttt
     4141 atcgtaacgc gtcccgattg cctctgtcgc atctttcgta tgcacattat ctgcatccgt
     4201 taaatccggc gaaaagttcc aaatcatgac tgtcaataca atactcgata ggacgaggag
     4261 cgctaacaca attgacttaa tcaattctct agttcgcatc ccaatcacct tcctcaattt
     4321 tctcacaagg taatgtgatg aaaatggatg tgccttgtcc ttccacacta ttcgcccaaa
     4381 tacggccgtt atgcgcttct acaatttctt tagagatggc aagacccagt cctgtccctc
     4441 ccatctttct cgtacgtgcc ttatccacac ggaaaaagcg gtcaaaaatt ttgtctactt
     4501 tattaatcgg aatcccaatc ccgttatctt taattcgaat cgttaaacga ctgtggacag
     4561 gattatgttt cacgtggaac tcgacacgtt tctcaccacg cgaatatttc atcgcattcg
     4621 taatgacgtt gtcgaacact tgcgtcatct tatccggatc cacttctgta aatatcgtct
     4681 ctctcggaat atcacgcacg aatgtcgtat ctttcgcagc catttcatgt cgattaataa
     4741 ttttgttgat gaacatatta aagtcaacaa tctctttcgt aatcgtttcc gtttcattat
     4801 ccattttaga caagtgtaac aagtcattca cgagacgaat catccgctct gtctcttcac
     4861 gcgtcacgga taaaaattga ggagcaatcg actcatcacg ccaagcgccc tcttccaaag
     4921 cctcaatata actattcata gacgttaatg gtgtccgtaa ttcatgcgag acattggcca
     4981 caaactcgcg acgttctcgt tcaatttgtt gttgctcagt gacatcatgt agcactgcaa
     5041 tgtaacctgt cacaaagcca gtatcttgca ctatcgtact aaagttgaca cgtgcaataa
     5101 taccttcttc ttcgttaata tcaatgagga cactatcatt attttcattt aattcttcaa
     5161 gtgaaaactc atcttgtaaa tctaatacat caaaaataaa gtgcccggag acttcctctt
     5221 tagacttccc tagcattttc agcgccatat cgttaataat acgcacacgg ccacgtctat
     5281 ctgtcgcaat taccccgtca ctcatatggg taatgaccga atctagacgc cgcttctcac
     5341 tttccgtatt cgcctgtgct tcttgaacac gtttcgacaa gttgttaaac gcgagtgcca
     5401 attcaccaat ttcgtcatta ccataaattt tcacacgttg cgtatagttc cctttagaca
     5461 tctcgactgt ctgatttcgc atatcagtaa tcggcttcgt aatcgtacgc gcaataaaga
     5521 aaccgagaat cactgtaata atgagcgaaa tccctgtacc tacgatgaaa atttggttaa
     5581 tgttgcttaa ctgatcgtac acttggttaa tattcgactc gatataaata tcaccaatca
     5641 taccatcacc agtcactacc ggcatatttt taatccatac acgctgctta ccttcaccgt
     5701 aatcttttag cactgtatcc gaattttctt gccctagcga caatgccttt tgaatagaac
     5761 tatcattcgc tttttggtta ataatcgtac ggttcgattg ttttgatgtc gcaataatga
     5821 tttgatcttt atcaataaag cgaatttcta tcatttcatt acgattggca tattcattga
     5881 gtaaattttg aatatctttt tgtgtattac cagaatcatt accatctgca tatatttttt
     5941 caataccgag ctcgatttgt ttcgcatttt gagaaatgtt tgtcttaaac gtctcagtca
     6001 tttctttttc aaggctattc gtaaagtaca gaccaataat ttgcatacca ataataatca
     6061 acaggacata gacaataaca agtttcgtgt gaagggattg aaattgtttt aaccacttca
     6121 tatttgccat cctctaatca tgttgttgta agaaatatcc aacaccacga cgcgtcacaa
     6181 tatagtctgg atgagaagga tcatcttcaa ttttttcacg taaacggcga atcgtaacgt
     6241 ctacagtacg gacatcaccg aaataatcat aaccccatac cgtttggagt aaatgttcac
     6301 gcgtcatcac ttgtcccata tgtttcgata aataatggaa caactcaaat tcacggtgcg
     6361 tcaaatcaat atcttcaccg cgttttttaa tagagtaagc atctggataa atcacaatat
     6421 ctttaattgt aatttcattc gtctgcatgt gattttcttg actcggttgt gtataatggc
     6481 ggcgtaagtt agctttcaca cgtgcaatta attcacgcgt actaaatggt tttgtcacat
     6541 agtcatccgc accaagctca agaccgagga ctttatcgat ctctgagtct ttagccgtca
     6601 acataataat tggcatttcg aattttttac gcacttcacg gcacacttcc ataccgtctt
     6661 ggccaggcaa cataatatcg agtaacacga tatcaggttc tttttcatag attaagtcga
     6721 ccgcatcgtt gccatcatat gcgacaaata cttcataacc ttcttttttc aaattaaatt
     6781 ctaatatatc cgcaattggt ttttcatcat cgactacgac tacttttctt gccataaaaa
     6841 tgaccccatt tcttaataag tacataatat cggttgctaa ctggcataat cctatacctt
     6901 ataatgtatc actaatataa attgaattct atctatttaa cccattttca tttgtatcat
     6961 aatgggcaaa atccaaccat tcagtttatg tatctagctt tttattgact ttgagataaa
     7021 cggccaacaa tatacctatg agcactatcg cttgtgtcac catcgaagct acaaatagca
     7081 catcgttgtc taaaacaatg agcacgatat ccacgataca taataggatt gaacataaag
     7141 ccgtataacc agaaattacc ttcatttgat gggcaaaggc gacttgagcg atttcccaat
     7201 tcttttgatt tttcatcgat ttcttagtcc gaaacccaat aaagtaattg atttcttgag
     7261 gtgggttatg ttggaacgca atcgctaata agaataaaaa caaacaactt gaaaacagta
     7321 tcatttgcgt tattcactcc ttaatttagt tgtaccataa tcataaacaa acggctacac
     7381 tcacttttaa aaaaggtata ggcgcgctat tgaggaacag aaaaatgggg gatgacattg
     7441 tcattcattc tctaaaaagc ataaaaaaga ctctttacat gtcacctacg caacacgtaa
     7501 agagtcagtt cacactagtg cttaccacca gacacgaaaa ttgagagtaa taatttaatg
     7561 aattcaataa tagccttcac cattaaaaac acctcctcta cacactttca gtatatgcct
     7621 gttgactgta aaaagaggta ttttgcctaa attataatta acactgcata gttgtcataa
     7681 caacgtatta caatcatcag ttaggcaagc ctaactgtct tagaaagaaa aaagtgctca
     7741 ccctattgga tgagcacgtt agcggtcccg acgggaatcg aacccgcgat ctcctgcgtg
     7801 acaggcaggc gtgttaaacc gctccactac gggaccatat catggtgact cctacgggac
     7861 tcgaacccgt gttaccgccg tgaaagggcg gtgtcttaac cgcttgacca aggagccttt
     7921 cttaaacaca agaatgatta tagcatcacc caatcgggtt gacaagattt ttttcggatt
     7981 tttttgtata atttttcata taaagttgtt cagggggtca tttatggaaa ttcaagcagg
     8041 atcgaacgtt gcttacatca aagagaaacc taaaaagcca cgtcaatttt tcaagagatt
     8101 tttctttatt acgttaggcg cagtgttgat gggaatagca ctggagcttt tcttagtacc
     8161 gaatcaattg ctcgatggag gcattgtagg tatttcaatt attctgtccc atttattagg
     8221 attcaaatta gggatattca tctttatact taatttgcct ttcttctttt taggctataa
     8281 acaaattggt aaaacttttg caatctctac tttgtatgcc atctctatct tatccgttac
     8341 gactattgtg ttacacccta tcgatccagt cattaacgat aaatttttag ttacgatttt
     8401 tggcggtgca gtcctaggta ttggtgtcgg cattgtgcta cgttatggtg gctcattaga
     8461 cggtacagag attttatcga ttctcgttca ctcaaaattg cctttttctg tgggcgaaat
     8521 tgtgatgttt attaatttct tcatatttgg cattgctggc tttgtgttca catgggagag
     8581 tgcattattt agtgttgttg cttatttcat cgcctcaaaa atgattgata ccgtcctttt
     8641 aggttttgat gaatccaaag cggtatgggt tattagtgat gcctataaag atattggtga
     8701 agcaatcaat tctcgtctcg gtcgtggtgt gacgtatttg aaaggtgaag gcgcgtatac
     8761 tggagaagat aaacgtgtca ttttctgcgt gattacacgt cttgaagaag caaaattgaa
     8821 agatatcgtt atggaaatcg acgaaaaagc cttcctctca atcggtaacg tttcagaagt
     8881 acgcggtgga aaccatcgta aaagagatat tcattagtga tgtcatattg gttcctcttt
     8941 ttaggatgca cgatgttgtt gtttaaagcc atgcgagtat tttgtgttat ccaacacaca
     9001 tactgaaaat aaaacaacat taaagataaa tcattatagg ccaataaaaa agaccaccaa
     9061 atcattttgg cagtcttttt tattttaggt cagtcttacc gaagcgttgc cggaagactc
     9121 ccctcagtta ttgtattacc ataatttttc tacaacattt gtttgattac gatctggacc
     9181 tacagagaag atagaaatgt gtacgttaca caattcagaa atacgctcta agtaacgacg
     9241 tgcattgtca ggcaattctt ccattgtacg tacgcctgta atatcttctg tccaacctgg
     9301 taatgtttca aaaataggtt cgcaacgttt taagtcgttt aagttcgctg gatattctgt
     9361 gatttcttta ccatctaact cataagctgt acagattttc acttcatcta agcctgttaa
     9421 tacgtcgata gagttaatag ataagtcagt aatcccgctc acacgacgag agtgacgtaa
     9481 caccactgag tcaaaccagc cgacacgacg cggacgacct gttgttgtac catattcgcg
     9541 acctacttca cggatatgat gacctttttc gtcaaataat tctgttggga acgggccatc
     9601 acctacacgt gacgtatacg ctttacatac accgacaact tttgaaacgt ttgttgggcc
     9661 aacacccgcg cctacagtga cgttacctgc gacaggattg cttgatgtaa cgaaaggata
     9721 tgtgccgtgg tcgatatcta acatcacgcc ttgtgcacct tcaaataata cacgttcatc
     9781 tgctacgaaa gcatcgtcta acacttttgc agtatctgtg acgtatggtg caagacgttg
     9841 accagctgca tagtatgttt caaaaatgtc ttcaaatgat ggtgcatctt gtttaaacat
     9901 accttggaag taatcatttt tatattctaa attttctttt aagcgttgtt cgaaaacttc
     9961 tttgtctaat aaatctgcta cacgaatacc cattctttgt gctttatcta cgtatgctgg
    10021 gccaatacct ttcttcgtcg taccaatttt gttgtcgcca cgacgcgctt cttcaagttc
    10081 atcttgttga atgtgataag gtaggatgac gtgtgcgcgg tttgagatgc gtaagttatc
    10141 tgttgcaatg cctctttcat ttaagccgtc taattctcta agtaatgcaa ctggatcaat
    10201 cacgacacca ttgccgatga cagcaagttt gtctttataa aaaataccag atggcactaa
    10261 atgcaatttg taagtttcac cgtcaaattt gattgtatga cctgcattat taccaccaga
    10321 aaaacgtgca atgacatctg cttgttccgc taaaaagtct gtaattttac ctttaccttc
    10381 gtctccccat tgtgtcccaa ctactacgat tgatgacata agagcacctc caagttttct
    10441 caattaacca aactgtattc taccagtatc acatcatgaa tgcaaatcaa aaaacgaaca
    10501 ttgaaaatta gattgtgcgt cacaccattc aagcccctct aaaatagtcg gacccttaca
    10561 accacgtgtt atacaagtgt tattaggctc tttcgcttgt gtccaaaatc ctaacttaca
    10621 tcaaaatcga taagttaata caaagtaaaa accgtacatt aaacagaatt tgttatataa
    10681 catacgtatt ttaagtttaa aattattttt tcttttcggt tgttccatgc aatatcacaa
    10741 ataaaacggt tgatgattga taacaccaac cgttccaagc acacgtccaa ttatcccata
    10801 tccgcatgag cataatcgat atctgtaaac ttattatatt gtttcataaa gtgtagcttc
    10861 actgtaccgg tcgggccgtt acgctgcttc gcgataatga tttcaatttc accattttca
    10921 tcatttgttt gtggttcgaa tccaccatca tcgtcatcat catctccatc gccacggtta
    10981 tagtagtcat cacgatataa gaaagcaacg atatcggcgt cttgctcaat cgaacctgac
    11041 tcacgaatat cactcatcat cggacgttta tcttgtcgtt gttcaacacc acgtgatagc
    11101 tgacttaacg caatcaccgg acactctaac tcacgggcaa tcgctttaag catacgtgaa
    11161 atctctgaca cttcttgttg acggttatct gatgcacgtg aaccacttcc ttgaatcaat
    11221 tgtaagtagt caatcacaat catatccagt ccatgttctt gctttaaacg acgacatttt
    11281 gaacgaatat cggtaatcct cacacctggt gtatcatcaa taaaaatttt cgtccgagac
    11341 agtttaccga ctgccactgt aaatcgattc caatcctcct cagtcatcgt ccccgtacgt
    11401 aaacggttcg aatcgacatt gcccgaacta caaatcatac gtgtcgccaa ttggtctgca
    11461 cccatctcta atgagaaaat gccgaccgta tattgatctt catgtgtggc tactttttgc
    11521 gcaatattaa gagcgaaggc agtcttacct actgaaggtc gcgccgctaa aataatcaaa
    11581 tcattacgat taaagcctgc tgtcatctgg tctaaatcgc ggtaacctgt cggaatgcct
    11641 ggcgtttgac cactattctg atccaattgt tccgcattat cataaacttg tcctaatacg
    11701 tcacgaatat ctttaaaacc gtcactctca cgtgtagaag acagttccaa gatacgacgt
    11761 tctgcatcat tcagcacggt atctaaatct aattcatcgt tatagccatc attcgcaata
    11821 ctatccgcag tgtgaatgag cttacgtttg actgcatttt tgaacaccac gtctgtgtag
    11881 tattgaatat ttcgcgttgt cggtacattc gatgtaattt cagcaagata ttggggacct
    11941 cccgcttcat tcacgacccc ttcttgtgtg agtcgatcca aaacagtcac aatgtcaata
    12001 tctttaccat cttcattcag gtccatcatc gcacggaaaa tatgctgatg cgcaccacga
    12061 taaaatgatt caggcaacaa aatttcttgc gtggacgaca tcaattctgg gtcgagaaaa
    12121 atcgccccca gtacagattg ttccgcctca tgactgtgtg gcattcgatt atgttcatac
    12181 atttcatcca tgccaatgac ctcctcactt tcatgacata tacttaacat attctataat
    12241 aacctaaacc gaatcacaat acatgattca gcatgttcaa aaatgtaaat tgctgatata
    12301 cgcacatgtc ttaaaattca tgaatttaac atacacatca tacgctttat gacttccttt
    12361 tctttatcaa atataagatg taaatcacca cagttgataa accaatagaa gatagcacca
    12421 caatgataag tgacatgatt atttcaaaaa gactgtcttt aggtaaaact ctgataatga
    12481 aggacattgg aatcatagag atcatataaa cccacacata tctttttaat tctttagata
    12541 tattctccat tttatcaaat cctttttaaa ccgcttttac tctatagtat tacaaatgat
    12601 gtatgaaaaa agccggtgac ctctgcacca gctttcttca caaccctatc attattgctc
    12661 tacagtatgc acacgaatcg taccttctac ctctttatgc agtttcacag gcacattcgt
    12721 ataacctaac gcgtgaatac cgtgtggcaa ttccatttta cgtttatcga tcttaatatc
    12781 atgttgcgct ttcaatgctt cagcgatttg tttcgtacta atagaaccga acaatttacc
    12841 gccttcaccc gatttcgctt tcacttcaac ttcaagcgct gctaaacgtt cttttaacgc
    12901 ttttgcatct tcaagctctt gttgtttgtc tttttcaata cgtttatttt tttgttctaa
    12961 ttgtttcaag ttccctggtg ttgcttcaac agcataacca tttttgatta agaagttgtt
    13021 cgcataaccg actggcacgt ctttaacttc accttgtttc cctttacctt taacatcttg
    13081 tgtaaaaatc actttcatga ttcgtcactc ctatccaatt gttcattaat cgcttgttgt
    13141 aacttttcga tagccgcttc aacagtcacg ccctctagtt gcgttgcagc gtttgtgaga
    13201 tgaccgccac cgcccaacgc ttccatagtg agttggacgt tgaattcgcc aagtgaacgg
    13261 gcagacatac caatgagatt ttcttcacga cgcgcaacga catacgccgc ttccacgcca
    13321 tcaagactca acaattcatc tgctgcttgg gctacggtca caggatgata gattttgtca
    13381 tccggaccat gtgcgattgc gataccattc tcttgtaatt tcaccgtacg aatcaactct
    13441 gaacggttaa tatacgtctc aatatcatct tttaagaaat gttgcgttaa gattgtatcg
    13501 gctccatgcg cacggagata acttgctgca tcaaatgtac gcgagcctgt acgcaatgta
    13561 aagttacgtg tatcaacgat gatacctgca tacatcacag tcgattctaa gcgtgttaag
    13621 cgttgttcag tcggttgata ctcgagtagc tctgtgacaa gttctgcggt agagcttgca
    13681 tatggctcca tgtagacgag taacggactt gagataaagc tttcgccacg acggtgatga
    13741 tcaatgacca ctttacgatt ggctttattt aaaatgttct cgtcaatgac catttccggt
    13801 ttatgcgtat caacgacgac aagtgttgta cgagatgtca tcatattcca tgcatcatcg
    13861 gacgtcacaa agcgctcctt caattcaggc ttttcatcga tttcatccat cacacgacgt
    13921 aatgtagggt cgatgtcaga ctcatttaac acgatatacg cttccaagtt gttcatcatc
    13981 gcaaatcggg tcacaccaat cgccgcacca atcgcatcta agtctgggcg tttatgtccc
    14041 atcacgatga ctttgtcgcc ttctaatagg atatctttca acgcatggga aatgacacgc
    14101 gctctcacac gagtacgttt ttccatcggg tcagtcttac cgccataaaa acggacgttg
    14161 ccattcatat ttttaatcgc aacttggtca ccaccacgac ctaacgcgag atcaagacca
    14221 gattgtgaca attcacccag gtcaattaag ttttctgagc cttcaccgac accgatactt
    14281 aaagtgagtt gtgcgcgata accgacactt ttttcacgaa gctggcttaa aatatcaaac
    14341 tttgtctctt ctaattcacg taaaatacga cgattcaaat aagcaataaa ttgatcggaa
    14401 ctataacgct tgaaatacac attatgttct tgtgcccaac gactaatgac acgtgtcacc
    14461 atcgagttga tttcagaacg ttgtgtatcg ttcatatttt gcgtaatttc gtcatagtta
    14521 tctaaaaata atgttgcaat aatcggctgt tgatcatcgt acgcttgttg gatggtggct
    14581 tcttccgtca tatctataaa atacaaaata tgttcttttt ctgaataacg gacacgatag
    14641 gcatacgcac catctgctat ttcgatttct ttcgcctttt cgagttgctt taaaatattc
    14701 gggtacactt cattgattgg atctgaaatg acattccttt caatccgctc tgacatgaaa
    14761 gggttgaccc actcaatttg gtcattttca tttaacacaa tcaaacctag tggcattgtt
    14821 ttgactgcac gatcactacc tattgatatt ttgccactca aatcatctaa ataacgatct
    14881 aaataacgat agaaacgtct aaaaatgaag acactgataa tgagcatgac aaataacagg
    14941 atagcagcga taaacgcaag ccactgatta aagaaaaagg atagacctac aatgatgatt
    15001 gctgtaacgg taatcactaa aaaaggtacg atcaacgctt tcttcattga atgacgattc
    15061 atcttgtcac ctcttatcgt tttttatcat acgttttaaa ttcaacccca aatcgagtaa
    15121 accaatgagg cgtgtcattg gataaaacag tacaccgaca atcactaaaa tcacttttaa
    15181 tgcgccgggc attcttttaa tagatgcaaa gaaatgaata aaacttaaac cttgaatcac
    15241 taataagaac cctaaaacga tttggaaatt aatgccaatg ctgttcggcg tagtggcagg
    15301 ttgtgttgta atcgttgtta ataatgccaa tgcatacata atgaaaactg aacgcttcat
    15361 ttgccagaaa aatagtgggc gaaatacagg tgttgccact ttgaacttac gtaaaatcgg
    15421 gaaaatgatg agcaatgtaa tgaacacgta aatagcaatc gctactacaa tcatccccgg
    15481 caactgtatt gcgagttgtt gaatcgaatt gtttaaaatc tcttgagctt gttgatctaa
    15541 attttctaac tctgcagctt gatgcattat tgcacgatac ggttgcaata agtcgtcagc
    15601 atacgggatt tttttcaaag tttgtaaaat catcatcgca cttaatgtta aaacacttgc
    15661 cacgaatgtc gttaaatata agatgcgctc tttagatgca cgttggatta ataactgact
    15721 gatgaccata cttaaaacta aaataatgat taaaaatgtc atcacaaaaa cgttgcctgt
    15781 gagcgttgag agaataatcg caataagtgc gactaagcca aacgaatgct tagattggta
    15841 ccataaaacg atacctggga tgaaactaaa gcatgccaaa atgattgcta atccaggcat
    15901 aacatgtata actaaagtca ccactaacaa cgccacaatg ctgattaggg ttgctttagg
    15961 attaattttc gaaaacaaag acgccacttc caaactatta tagtctataa attctatttt
    16021 acaggctttg taatatgaat acaatttgcg ccacatgatt tcacgcgtct tacaattgaa
    16081 ttacaaaacg tcactttctt gaacacatta gaaaagctat attttagcta ttatccctaa
    16141 aatatagctt cttgtctagt attcttagtt gacgtaatta taacaaaaat gtaacgtttt
    16201 cgtctaaagt tagcgtctaa atcgtgaaac ttttaggaaa tgatacaggt acggcgccca
    16261 atcattaaaa ttcaataaaa agccatcatg tcctacatta tcaggcacaa agaaatggcg
    16321 atgatatttg aaataacagc ctaacgcagc gacttggtca tctggataca gcaagtcatc
    16381 tgtaaagccg agcgtgagaa ctttcgtgtc taatgattgg aatacgtttg cgacatcatc
    16441 tctaccatgg tgaatgtcat gactgtctaa cacatcaaga agtgttaaat aacattgcaa
    16501 atcaaactgt tctttaaatt tatcgccttg gtgcttttga tataacacga cttcatcagg
    16561 tgtgaagcgg gcgtcataac ttttagagga ccggtacgtt aaaaagccga gttgccgcgc
    16621 gatacttaat ccttcttctc ccgctaaatg gatggcttgt ctcgctattt cattaaacgc
    16681 ccgactataa gaagatgtct tttcagtagc tgctaaaatg actgcctttt tcacttcgaa
    16741 cttttgattg tagaggagct ccattacttg catgccacct aaagagcctc cgatgagaat
    16801 gtctattttt tgatgaccga gtgcttcaat gcctttttcg agagcacgca caatatctcg
    16861 caaggtgagt ttttgtggga agttgggatc tgttaaacga gaactcgacc caaacggact
    16921 accaatgaca ttaaatgtca aaaactggta atcatgaact ggcatgtacc ccccatcaat
    16981 aatctctcgc caccaccctg gattgtcttc tgtcccataa gtgagatggt tacctgtcaa
    17041 cgcatgacat acgacgacga gtggctggcc aggataacct acatattcat actgaagctt
    17101 caaattttca atcgtttcac ctgattctgt cgtaaatgca cctaatgcta atgtgtccac
    17161 gcgataattc accatttcag tctaccctcc ctctaaaaat taaaaaagtt gtacaacctt
    17221 tgacggctat acaacgttta taagtcagtt tttaaatgaa cttatcatcc acataacgtg
    17281 gttggttgta gcaccgtact tataacgata agtggttgct gaagtgtcac tgggccaaat
    17341 ccctcaactt ctcttaataa gcttattttt aataaagtta tgttgtgtct ttaatcatac
    17401 cgcaaaccta tcacgtatgc aaatgattgt tagaataatc cgataattct caacagtgcc
    17461 acactcacca taccgacaat gactgttatc gttaaacgtc tcgtccaaaa agcaatgata
    17521 agcgtcggaa tgagcgcgat gataaagtgc caattcaatg tataacccat catgccttct
    17581 tgttgctgaa tgaacccatc gaccactaat gcagtaaata atgtaatcgg aataaacgtc
    17641 agccacttaa gcaccttgtc agacagttcc atacgtgaaa tcatgacaaa aggtgtgatt
    17701 ctgatgagta aagtcccaag tcctgctaaa aaaatcgtcc aaaatacgta catgctcatc
    17761 ggtcaatcac catccctatc gtcgcactta aagtcgatgc aagtaaaatt gctaaatacg
    17821 aaggtaaaaa caaactgagt agtaacatca taacaatgac gattgcaact aaatagagat
    17881 acacacgtaa tttcgatttc gtaatgccct caaattgtga aattgctaaa aagataaaca
    17941 tcgcagtgat cgcgtagtcc aatccaaata cttctggatg ttggaaaaag tcacctaaca
    18001 atccaccgag cacagtaacc aatgcccaaa ataagtaggc cagtagattt aagccataca
    18061 tccactgata tgtcatcgta tgtcctttcg aataaggcgt gattgcaaca gcaaatgttt
    18121 catccgtcaa taaagaccct acccctatcc tatgtatgaa atgatcatgt ttgaaattcg
    18181 gcgccaatgt catgcttaat aaaaacatac ggctattgac aatcatcgca gtgagcacaa
    18241 tgacccagat cggcgtttgt acggcaatga gcgcaataat aataaattgt gctgcccctg
    18301 cataaacaag taatgagagc agtaatattt ctaaaatgtt gaagcctgat gcgacactca
    18361 caattccaaa tgaaaagcct accccagcat agcctagtac agtagggaga caatcgcgga
    18421 tgccttgttt aaatgtagtg taaggcattg agactccccc ccttgaaaat tattcttatt
    18481 atagtacaac atataccatc tcgctataaa gtcagtctca cctcattcgc ccctcagtct
    18541 aacctaccgt ctaaaaatga tgatattatg ggtttttatg ttaattttag aatattgaga
    18601 taataattga tgaggtgcgt cttattttgt tattttgatt actttttacc ctccccctgc
    18661 cctcttcacg tgctaaaaaa acaggaggtc gtatattaaa aatacgagct cctgatttga
    18721 tttcagctat tctatattgg gttgtttgta acgtccattt tatcttaaag cggtttgata
    18781 actgtttgac cacccatgaa tgggactaac gcttcaggca ctgtaatcgt accatcttca
    18841 ttttgatagt tctctacaat cgccgcaaat gtacgaccta ctgctaaacc tgaaccattt
    18901 aacgtatgtg catattcagg tttggcatct ttatcacgtt tgaaacggat attagcacga
    18961 cgcgcttgga aatctacaca gtttgaacat gaactaattt ctttatagtc actgtagctt
    19021 ggtaaccata cttctaagtc atatgtttta cttgcaccga aaccaatatc gcctgtacat
    19081 aaaatcacac gacggtatgg taagttcaat gcttcaagaa tcgcttctgc atttgatgtc
    19141 atttcttcta aagcatccca agaatcttca ggtttttcaa tacgcaccat ttcaacttta
    19201 ttgaattggt gcagacggat taagccacgt gtatcacggc cagctgatcc cgcttcactt
    19261 ctgaaacatg ctgattgacc tgtaaactta gctggtaaga cccccggctg tacaatttcg
    19321 tctctatagt agtttgtcaa aggcacttca gcagttggaa ttgtgtataa gccttctttt
    19381 tctactttaa acaaatcttc ttcaaattta ggtaattgac ctgtaccgta catcgcttta
    19441 gcattcacta actgtggtac catcatttcg cgataaccgt gttgtgtcgt atgcatcgta
    19501 atcataaagt tcattaatgc acgctctaat ttagcaccgt cattcgttaa ataaacgaaa
    19561 cgtgcaccag acacacgtgc ggcacgatca aagtctgcca tttctagtga ttctactaag
    19621 tcccagtgcg cttttgcttc aaagtcgaac tcacgtggtg ttccccatct tttaagttct
    19681 acgttatcag aatcatcttc accttcaggc acatcatcgt gaataaggtt tggaatacgt
    19741 gataagatgt catttaattt cgtatccgct tcttttaact gtgcatcgat atttttaatt
    19801 ttttctccta cttcacgttg cgctttaatc gcatcatccg cattttcttt attacgtttc
    19861 ttttcagcaa tttgttgaga agctttgtta cgttctgctt ttaattcttc agtttgttgt
    19921 atgtaatcac ggcgttgttg gtctaacgct aacacttcat ctacaactga tggatccatt
    19981 tgacgtaacg caattttctc cttaactctc tctggctcat ttctaaataa tttaatgtct
    20041 aacataagtc gacttccttt cataaagtaa tttaaaaatt taaggaggat gactcaaaat
    20101 aaaaaaccac atccctcaca caagggacgt ggtttgacgt gttgccaccc tatttaacag
    20161 acagaatatg cctgcactct cacaaaagtt aacggtttca cccgaattgt tttcaaaacg
    20221 tgggtagatt tcgtataggt ctgtacattt gttttcaccg accacaaact ctctaattcc
    20281 attgctatac tacttaatcc acaaacaatt atttatttcg atttcacatt taatataaca
    20341 aagaaaattt cgaatagcaa gcttatttct gatacgccag attctttaaa tatttcgcca
    20401 cattttcaat atcttgatga aatggtcggt cttcttgaat cgatggcacg attttacgca
    20461 atgcttcata ctgttcacgt gttttgggtg acaattgttc aacccctctt atttcgactg
    20521 cttgtgacgc aataatcgct tcaatcgcaa tgacgcgtcg tgtattttct aaaatttgat
    20581 agccgtggcg tgacgcaatc gtccccattg atacgtggtc ctcttgattg gcggatgaag
    20641 gaatcgaatc aacactcgcc ggatgcgcca atgttttatt ttctgataca agactcgctg
    20701 ccgcatactg cataatcatc gcaccacttt gcaaacctgg ttctggactt aaaaaagcag
    20761 ggagaccccc attgagttgc ggattgacta aacgttcaag acgacgttcc gcaacgtttg
    20821 ccaattcact tgtcccaagc tttaagaaat ccaaagcgaa tgcgacaggt tgaccgtgga
    20881 agttaccgcc agaaatgacc aatgtcttat caccttcatt aaaaataagc ggattatcat
    20941 ttgctgcgtt catttcaaat tctaactttt cacgaacgta ttgaaacact tggaagcttg
    21001 caccatgaat ttgtggaata caacgcaatg tataagggtc ttgaacacgc atttcccctt
    21061 gacgtgtcgt gagtttggat ccttcaagcc agtctgacat ccgtcttgct acagctgtct
    21121 gttcttcaaa gttacgcact tggtgaaccg cttcatgata agcatctgta ataccatgta
    21181 acgcttgatg tgttaacgcg gcaatccatt ctgcttggta tgccaaattt tcagtttcta
    21241 tccatgaaat gaccccttgt gctgtcatcg cctgtgtacc attaatcagt gccaatcctt
    21301 ctttcgcttg taacgttaaa ggcttacggt tcaactgttt taagacctct gagctatcta
    21361 aaacttcacc ttggtattca actttacctt caccaattaa cgctaaggta aggtgtgaca
    21421 atggcgctaa atcacccgaa gcaccgagag aaccttgttg tgggataaca ggaatgatac
    21481 gttgattgat gaaaaacacc aattgatcca ctaattccat cgtcacgcct gaatgccctt
    21541 tcagtaaagt atttaaacgt aaaatcatca tcacgagcga aacattcgat gcaaaaggtg
    21601 caccgatacc acacgcatgt gaacgtatta aattgacttg taattgatta tacttctgtt
    21661 gatcaatcag tacatcgcta aacaaaccaa accctgttgt aatcccatac acggtctctt
    21721 tattggcaat aatccgttcc acaatcgcac gacttctttc cacgcgcacc tgtgcttcct
    21781 cagtcacttt tactttatcc tcatatgcta aaaactgtcg tatagcctca atcgtcaact
    21841 gctcgcctgt taaacgtaat gtcattgtaa tcctcccatc tccttcatca cgtgacacac
    21901 aaaatgtcta tttctttcaa gtatagtttt aggatatcgt tttcacaata ctttcagcca
    21961 aactcgtaat atggtatcaa attaaccttt taacgtacta aacgaactca cttaaacaaa
    22021 tatcgaaatt taagttactt tttcaaaaaa ataaaagggc tacaaaatag gggaacatgc
    22081 atagtcgctc acgtttgcgt agcgctatca caaagggtca cattgaaacc ttagaatgcc
    22141 tattgacgaa cgagcaaacc aggtataata tatcttgttg taataatgga aattccagat
    22201 aggaggtctc aaacgtgaaa acattgtcag ctgttcacat tcctaaacgt aaggatgaca
    22261 cacataaagg tgactatgga cgtattctgt taattggggg caatgccaat ttaggtggcg
    22321 caatcatgtt agcagcacgc gcttgtgtat acagcggaag tggcttaatt acagtcgcaa
    22381 cgcatccaac aaatcatgtc gcattacatt ctcgttgtcc tgaagcaatg gtcattgaca
    22441 tcaacgatac gaaaaaacta acgaaaatga ttgaagcttc tgattgtatt ttaatcggac
    22501 caggtttagg gttagatttt aaaggtaaca atgcaatgac atttttactg caaaatattc
    22561 aaccccacca cactttaatt gtggatggtg atgcgatttc aatcgtaagc aagcttaaac
    22621 ctgaaattcc agcttgcaat gtcatttaca caccacatca aaaagagtgg gagcgtttga
    22681 gcggcattcc gattgaggaa caaacatatg aaacaaaccg tgcagcagtt gatcgattag
    22741 gtggtacggt cgtgctcaaa aaacacggta cagaaatata ctttgaaaat gacgcataca
    22801 agcttgaagt cggtagccca gcgatggcaa caggcggcat gggtgataca cttgccggca
    22861 tgattacaag ctttgtagga caatttgaca acgtgattga tgcaattaca agtgcaactt
    22921 atacgcacag ttatattggc gataagttgt caaaggatat gtatgtcgta cccccatcaa
    22981 aaattattga tgaaattcct tatgcgatga agcaattaga ggaaaaataa tattttacaa
    23041 atcgtaggaa gaaagactcg gaaacttcaa tgtgatccga gtctatttgt tttaataagg
    23101 aaatcgattg gttattaatg cttctactac acatgtacaa ttcaaacaaa gcggtgtcca
    23161 gttaaaatgc tacccccagg aacgcgccgc atcgttcagc aatctaacgg taacaaggta
    23221 accaaagaaa aagacgatga tctctaaatg acatgagacc atcgcctttt caatttataa
    23281 gttattcatc ttcattttca atatcttcat tcacgcgatc cataaagtct tctctcaatg
    23341 tttcacgttc tggtgatact tctggttctg gggcttccgt gtgaatcgta tcgccaggag
    23401 tcacatcatc gacaacaact tctacatcat cacttgcctc tgatgcggtt gtatgttcat
    23461 ccgcttcgat gtcttctggc tctttcttca cttttgccac tgtcgacaca tattgttctt
    23521 catctaatcg aatgagacgc acaccttgcg ccatacgacc attgacagaa atattagaga
    23581 cttccatacg aatgatcaca ccctggtttg tcacaaccat taaatcctcg tcgccttcta
    23641 cagttgtaat acatacgagt cgaccatttc gttctgtcag tttcgctgtt ttcacaccca
    23701 taccgccacg tttagacaga cggtagtctt ctatcgatgt acgtttaccg taaccttttt
    23761 ctgtcacgac tagaatttca tcttgattgt catcgtctgc aacgtctaaa ccaatgactt
    23821 catcaccgtc tcttaaacgg atccctttca cccctgcagc aatacggctc atcgcacgta
    23881 cgtctgtttc tttaaaacga atgagtgacg cttgggctgt accgataaga atatgtttct
    23941 cgccatctgt tagacgcacg gcaatcagtt catcatcatc acggaatttg atagcaattt
    24001 taccgttacg attaatacgg ttgaagttgc ttaatgctga acgtttaatt aaaccttttt
    24061 tcgttacgaa tacgaggaag tcttcttcag agtctaggtc tttcaccgca atcatcgtac
    24121 taatcacttc atcttgatcg agttcaatca cattaacaat tggaatccct ttagactgac
    24181 gggagagttc cggcacttca taacctttca gtttgtagac acgtcctttg tttgtaaaga
    24241 acaacacatg atcatgcgtg cttgtcgtca ctaactgact tacgaaatcg tcatcaagtg
    24301 tattcatgcc ttgtacgcct cgaccgccac gattttgcgc gcggtatgtt gaagcaggta
    24361 aacgtttaat gtagttgtta tgactcaatg tgataacgat ttgctcttct gggattaaat
    24421 cttcatcttc taattgatca ataccaccga gttgaatttc agtacgacga tcgtcgccaa
    24481 acttctcttt aatctcagtc aattcttcac ggacaagttc taatagcttt tcttcatccg
    24541 ctaaaatcgc ttctaattca gcaatatacg caattaaatc attatattct tgttcaattt
    24601 tgtcgcgttc taagcctgtc agacgtctta aacgcatgtc taaaatcgct tgtgcttggc
    24661 gttctgacag agcaaagcgt gactgtaaac tttccattgc tactttatct gtctctgatt
    24721 cacgaatgat tgtaatgatt tcatcaatgt gatccagtgc aattcttaga ccttcaagaa
    24781 tgtgtgcacg gtctttcgct ttacgcaaat tgtattccgt acgacgacgt acaacttctt
    24841 tttgatgctc taagtaatga taaagggctt gcttcaggtt aatcaattga gggcgtccat
    24901 tgactaaagc aatcatgttc accccaaatg atgtttgaag tggtgtttgt ttatataaat
    24961 tatttaaaat gacgctcgca ttcgcatctt tacgcacatc aatcacgaca cgcacacctg
    25021 tacgtaaact cgtttcatca cgcaaatccg taatgccatc gattttttta tcacgaacta
    25081 attccgcaat tttttcaatc atacgtgctt tattgacttg aaatggaatt tctgtcacga
    25141 caatacgatc acgaccgcca ccacgagatt caatttcagc tttagctctc ataatgacag
    25201 aaccgcgacc tgtttcgtat gcgcgtcgaa tcccactttt accaagaatt aatccggcag
    25261 ttgggaagtc tgggccttga atgtcttcca tcaattcact aatcgtaatg tctggattat
    25321 gacttagact cagtacgcca tcgatcactt cacgcatgtt gtgtggtggg atattggtcg
    25381 ccatcccaac cgcgatacct gaggcaccat tgacgagcaa attagggaaa cgcgatggca
    25441 agacgctcgg ttcacgctca ttaccgtcat agttgtcgat aaaatcaatc gtgtctttat
    25501 tgatgtcgcg taataattct agtgcaagct ttgtcatacg tgcttctgta taacgcattg
    25561 ccgcggcacc atcaccatcc atcgaaccga agttaccttg accatctaca agtggataac
    25621 gatagctgaa atcttgtgcc atacgtacca ttgcttcata aattgacaag tcaccatgtg
    25681 gatggtattt ccccatgaca tcccctacga tacgggcaga ttttttatac ggcttgtcag
    25741 gggtcatccc ttgttcattg aggccataca aaatacgacg atgtacaggt tttagaccat
    25801 ctcttacgtc tggcaaagca cgagatacga taacactcat cgcgtagtct aaaaacgatt
    25861 cgcgcatctc tttgctgata ttacgttcat taattcttga ttcagatgtt tcagccatca
    25921 agatatcctc cttctcattt tccaattctc attctagaaa tccaggttcg cgtatacggc
    25981 attatcttca atgaactgac gacgattttc aacgacatcg cccatcaaca tttcaaaagt
    26041 ttggtctgct tcaatcgcat catccaacgt cacttgcaac atcgcacggt tttctggatt
    26101 cattgttgtc tcccataact gatccgcatt catctcacct aaacctttat agcgtgcaat
    26161 agaccatttt ggcgtaggat tcagtttttc ttttaattta tcgagctcac ggtcattaaa
    26221 cacataatac ttttgcttac cttgcgtcag tttatacaac ggtggttgtg caatatacac
    26281 gtaacccgct tcaatcaacg gacgcataaa gcgatagaag aacgtgagta acaacgtacg
    26341 aatatgcgca ccatcgacat ccgcatcggt cataatgaca atcttatggt agcgtgcttt
    26401 cgaaatatcg aattcgccgc caatgccagt accaaatgcc gttaccattt gacgaatttc
    26461 attgttgttt aaaattttat ctaagcgtgc tttttcaacg tttaaaattt taccacgcaa
    26521 cggtaaaatc gcttgtgtac gtgagtcacg acctgatttt gtagaccccc cggcagagtc
    26581 accctctact aagaaaatct cactttcaga cggatcttta ctcgaacagt cagctaattt
    26641 acctggcaaa cttgaaatgt ccaaagcaga tttacggcgc gtgacttcac gtgctttttt
    26701 agcagcaata cgtgcgcgtg atgccataat ccctttttct acaatgatgc gtgccacctg
    26761 tggatgttca tataaaaagc gctcaaaaag ctctgagaag acacggtcaa caatttgacg
    26821 aacttcagag ttacctaatt ttgttttcgt ttgaccttcg aattgtggat caccatgttt
    26881 aatcgacacg actgctgtta agccttcgcg tgtatcttca cctgataaac gatccttatc
    26941 ttctttaatc aacttgcttt gtgtaccata attgttcaac actcttgtca atgcacgttt
    27001 aaagccgtct tcgtgcgtcc caccttcata cgtgtgaatg ttattcgcat atgtcagtag
    27061 atttgttgca aaaccactgt tgtattgtag tgcgatttcc acttcaatat cgtcacgtgt
    27121 ttgatgaaca taaaccggct catcatgtaa aggctcttta ttttcattta taagctccac
    27181 atacgactta attccacctt catagtgata actatcctca cgcacatttt cttcgtcacg
    27241 ttcgtctgtg agcgtaatac ggatgccttt atttaaaaat gccaattcac gaatacgttt
    27301 ttgtaatgtt tcatagttat aaactgttgt ctcttggaaa atcgtaccgt ccgctttgaa
    27361 acggatgact gttcctgttt gatctgtatc gcctacttgt tttaaatcaa aagcagggac
    27421 acctttatgg tacgcttgat gatgaatacg accatctctg tgcacataaa cctctaatgt
    27481 ttcacttaag gcgtttacta ctgatgagcc cacaccatgt aaaccacctg aaactttgta
    27541 tccaccgccg ccgaacttac cacccgcgtg taatactgtt aaaataactt caactgcagg
    27601 acgtcccatt ttttcttgaa tatcaacagg aatcccacgt ccattatccg taactttaat
    27661 ccaattatcc ttctcaatga ctacttctat gttatcagca tatcctgcaa gtgcttcgtc
    27721 aatactgtta tcgacaattt cccaaacgag atgatgcaga ccgcgttctg aagttgaacc
    27781 aatatacata cctggtcgct tacgtaccgc ttcaagacct tccaatactt gaatctgact
    27841 tgcgccatag ttttctgagt tgttcacatc agccaaaact tccaccttca ctttctgcct
    27901 attgctttat atttccttgt gtaatccgat atacctttgc atccttcata atttcatgat
    27961 caataccatc tactgacgtg gtcgtgacaa aagtttgtac tttatgttga atggtgctca
    28021 aaagatgtgt ttgacgtgca tcatccaact cacttaagac gtcatcaagt aataaaatgg
    28081 ggtattcccc cacttcctga ttcattaatt ctatttctgc taattttatc gaaagtgctg
    28141 ttgtgcgttg ttgaccttga gagccgtaag tttgtgcatc catgccattc acttgaaatg
    28201 ctaaatcgtc acggtgcggt ccatacaaac tcacacctcg ctcaatttca cgttccatat
    28261 ggtgttgcac atcttctagc acttgttgaa ttaagacgtc ctcagactgc gagacgtctt
    28321 ctattttgat gcttggtaaa tattgcagtg tcaaagtttc acgttcattc gtaatcccag
    28381 aatgaatcgg cgcggcaagc aattctaact ctttaatgaa ttgctgccta cgctgagtca
    28441 ctttaaccgc atattctaca aattgatgat tcaatacttc aagcatcgtc gtatcttgtg
    28501 tctttttgag ctgcagttgc ttcaaataat gattacgttg ttttaaaatg cgttgatatt
    28561 gagataaatc attcaaatac aagcgcgaaa tttgaccgag ctccatatca ataaaacgcc
    28621 gtctcacttg tggtgcacct ttgacgatac ttaaatcttc cggggcaaag aggacgacat
    28681 tcaaatggcc aatatactgg gtcaaacgac tctgttctaa atgattcacc ttaacttttt
    28741 tacctttttt cgtaataaac atcgtgagcg gcatcgtgcc atgacgaaaa ttaagctcac
    28801 cttctatttt agcatactca gcattaaagc gaatcaattc tctgtcattc gtcgtacggt
    28861 ggcttttagc gagtgccaaa gtataaatcg attctaataa attggttttc ccttgtgcgt
    28921 tttctccgat taagatattg acctcgggat gacaatcgag gcttatctgt tcataattgc
    28981 gataattttc tagttggagt gttttgagtt tcattgctca ccgaatttga tgatgtatga
    29041 acctacttca ggaatgtcta attgatcgcc atcttgcagt tttttgccac gacgcgtttc
    29101 caattcgcca tttaagaaga cctcatattc gcttaagaac catttcgctt ggcccccaga
    29161 ttcaataatg ccttcatagt ttaaaaattg tcctaaagtt agtgcgccat caacgattac
    29221 ttcctcagcc aaattcatca ctccattcat atttactcac ttatatatta tacattttta
    29281 ttacgaaaat ttcatgctct agaaaggaat tttcacgtaa aagtttcatg tggaacatgt
    29341 gaatctgttt caacggatgt acagctattt tattgttcaa gcgctttgtc gatttcgttt
    29401 ttaatcgcgt cgaaatctgt ctcgtcttca acctgtttac cgttcacata gagtgcgggt
    29461 acgtatggga cttcctcttt tttcgctaat gcatgatctt cttgcgcgcg cttagctatc
    29521 gctccttttt cgtcacgata agctaccgta atttgtttac gttcttgctc actcaaatct
    29581 aatttttgta attgctgttg aattaaatcg tctgttaacc aatgttgact cccaacatca
    29641 tctttattgt taggttgttg ttcaaaaagt gcatgatgaa attgccaata tttgtcaggg
    29701 gcatattgat tcaccgcgag tgctgcttta gcgccgagtt cagattcctc cccatggatt
    29761 aatacgttga cataacgaaa ttcaactttg ttattgtcga tatattcttt ttctaattta
    29821 ggtttgatat tacgttcaaa atctccgcaa tacgggcatt taaagtctcc aaattctacg
    29881 agtaatactt tagaatcttt tttaccttgt gtcggttgct tttgtgtctc tgctgcaagt
    29941 gtttcacctg atccgctatt tcctttcttc gatgttttga aagtggctaa gctaaaaaag
    30001 atacctgcaa cgagtatgac aacaatgaat ataatcaacc atttattttt ctttaacata
    30061 ggtccattcc tccattcatt cgttatatta attatactaa agttaaatca ctttgaataa
    30121 ttacacgtgt aagttcagga aatgacttta aaattttgtc atttttttgc aacacattga
    30181 aatggtgaca ccgctgaaat gctggtggat attgctttta actttgtctc tgagaagttt
    30241 cacatatttt gtgcaaacta ttaggaaaat cttaatgttt tagctaagca ttaaaaaagc
    30301 agttggtctg gtagccaact gctttttata ggtgcgccgg tttagtacgt acggattggt
    30361 aaaataagtt gtgtcacagt gtcgtcatct ttcggtttta aaataaatgg tttcatcgta
    30421 ccgaaaaatt ctacttcaac ttcttcgtta tcgatagcct tcagtgcatc catcatatat
    30481 ttcgagttga aagaaatctt taagttgccg ccttcaacat cattggcagt cacttcttct
    30541 ttaaccgtac caatttctgg tgatgtagaa gacaattcga tttgcgtatc acctgtgctt
    30601 aatttgatga cattattgcc accttcacgc gcaagtaacg acgcacgatc aatcgcatga
    30661 taaaaatcag agttattgag ccctaactta atttcgtagt tttcagggaa taaacgagat
    30721 gtatctggat aatgtccctc taataaacgt gaaataaagt tgacattgcc tactctaaat
    30781 aatacttggt tcgatgcgaa gaaaatatca atatgatctt cactgtcagt cataattttg
    30841 tttaactctg ctaatgcttt accaggaatg atgacatttt tatcttcaat ctcttcttca
    30901 agcttcaact ttcttacagc caagcggtgt gaatcggtcg cagtgcataa taattcattt
    30961 tgttgtataa gccagttcac acctgtcaat actgggcgtg tttctgaggt ggacactgcg
    31021 aaattcgttt gtgcaatgat gtttttcagc acttttactg gtaattgtag tgcatcatca
    31081 cttgaaactt gtggtaaaag tgggtactga tctggatcaa gtccacttaa gttgaattca
    31141 gaatgtgctg aagtaattaa tgtttgaaat tgttcgtttg ttgaaagttt aacttcttta
    31201 cctggtagct ttttaataat gtccacaaag aagcgacctg gtaacacgac tgaacctggt
    31261 tcaaccacgt taataatttc ttgaccatcg acttggttag gaattgtgat ttcgattgag
    31321 atttcagaat cagatcctgt taaaacaata ccttcattcg tcgcatctat tttaatcccc
    31381 gttaaaatgg gtaaagttgc tcttggtgaa atagctttta atgtgtcatt taattgagtg
    31441 ataaaataat ctctttgaat agaaaactcc atcatctata aactcctttc agtcgtttat
    31501 atagttatag ttattaataa attagtaatt atagtcatag gtgctgtgga ttagtggata
    31561 actttaaaaa agtcacgaaa ataaaggtta ttcacatgtg gataacctgt gtatcatgtg
    31621 tacaactttt ccacgttatc cacaaattaa cttcggatat ctttttccaa actttcgatt
    31681 tcttgacgta aagttgggtc attatcgata tcttttttaa ttttatcatg tgcatggatg
    31741 actgttgtat ggtcacgacc accaaattct tctccaattt taggtaatga aaaatctgtt
    31801 agttcacgtg ataaatacat tgcgatttgt cgcggatatg cgatagattt cgttcttttc
    31861 ttagctacaa agtcttcaat acgcacgcca taatattcgc cgacaacctt ttggatatct
    31921 tgaatcgtga tttttttagt tttagtcact tgaataatat cttttaatgc atcggcagtg
    31981 agttctgttg tgatgggttt tccttgaagt tttgaatagg ctaagacacg tgtcaaagca
    32041 ccttcaagtt cacgaatatt cgtctgaatc tgattggcaa tgtaagttaa agactcaatc
    32101 ggaatatcga gattttcttc ttcagttttt ttctgtaaga tcgccatacg tgtttcgaaa
    32161 tcaggtggtg taatgtccac gataagtccc cattggaagc gtgatttaag acgttcttct
    32221 aaagttgaaa tttcttttgg cgggcgatca ctagagatga cgatttgctt cttgttttga
    32281 tgtaaatcgt tgaaagtgtg gaaaaactct tcttgcgtct gttctttctt ttggatgaac
    32341 tgaatatcat caatcaatag aatatcgatg ttacgatatt tttcacggaa tgactcagta
    32401 tcattgtttc gaatcgattg aatgaattcg ttcgtaaact tttcacttga cgtgtaaagc
    32461 actttcgcat ctggattatt ttctaacacg taatgtccaa ttgcgtgcat aagatgcgtt
    32521 tttcctaaac ctacgccccc atagataaag agtggattgt aggcattggc aggtgattcc
    32581 gcaacagcaa gacttgcagc gtgcgggaag cggttaccag gtccaattac aaacgtttca
    32641 aaagtgttgt ttgtattgaa ctgctcacca gacacaacgg gttcaacagg tgtcgaatga
    32701 cctgattgat gagatgacga agcgacatta agttcttgta gatcctcttc agtaatgaac
    32761 ttaatggtgt taatggtttg ttgcgtgaca gcttctaaat attgcttgat cagctttgta
    32821 tagttagtag taagccaatt cgcaataaaa ggctgtgctg caataacgat agcttcatca
    32881 cgagatagag catagagtgt tgtgtctttg agccaagtgt catatgaaac agtagtgaca
    32941 ttttctttac ataagctgag aacgttatcc caaatttctt gttctgacat tttaactcca
    33001 tcttcctaag taaaaatttt tgttatacac aatatcccca cctgtgaatg acgttaatca
    33061 cagggtgtta ataattatcc acaatttaat cacaagctgt ggatgagtac catttgattg
    33121 tgagttattc acaatatatt tgcgtaaatt acatagtatt caacctatgc agaataaggg
    33181 attacaccac ttatccacac aattatactt tttcacaagg ggtgatgtca aacggctgtg
    33241 aatatgttgt tatcatctta agtaacttgt gcacatgaaa atgttatcca caatttgagt
    33301 gacgagggat gtgaataagt ggacaacttt tcaacaacga ttatcgataa ttatgaaaaa
    33361 acccacttga tttacagaga tgattttgtt atattgtagt agttgctt
//
LOCUS       DANHOL010000008        31301 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.008, whole genome shotgun sequence.
ACCESSION   DANHOL010000008 DANHOL010000000
VERSION     DANHOL010000008.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 31301)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 31301)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..31301
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.008"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(70..999)
                     /locus_tag="PTC08_000241"
     CDS             complement(70..999)
                     /locus_tag="PTC08_000241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDK5681776.1"
                     /translation="MLSLLLILGLVAGAVIPVQTSINSRLSRFTQSSLYASAISFTVG
                     TLLLVILNFILNPHLLTAEAFGHYHFDYYWYVGGLMGVIYLTGNMILLPRIGASLTVV
                     TTITGQILMSVLIDTFGWFNVDVQALHVMKVLGIVLLLIGIILMNLQKNAKQLAQSGH
                     NGPWMLVGMIIGFTPPIQTAINSHLGQTLHSPFFASLVSFTVGASALIILTLMLHRHV
                     KIHTTSEQHGPLKWWHFIGGALGVIFVTTNIILTPVIGVTFTLITVMVGQIIMGLLID
                     HFGLFGVPHRHITKQRLLGFMLIIIAIIIIQFN"
     gene            1213..1482
                     /locus_tag="PTC08_000242"
     CDS             1213..1482
                     /locus_tag="PTC08_000242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5681777.1"
                     /translation="MKLKESCDILKEHEIVRVIDDHLFFINVNASSKLEEGQYVEVLN
                     PFKSYKTLARIDEVYEKYAICQKLGKFKIFYGDEVRIRPNYQSNV"
     gene            complement(1823..2038)
                     /locus_tag="PTC08_000243"
     CDS             complement(1823..2038)
                     /locus_tag="PTC08_000243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2922 domain-containing protein"
                     /protein_id="HDK5681778.1"
                     /translation="MNVKTLEITFLDALQKTFKLSLPNIKGTITKEVVQEEAEKLVAL
                     NVLKTMHGPVVKVAGAQVIDKSVIVLF"
     gene            complement(2054..2257)
                     /locus_tag="PTC08_000244"
     CDS             complement(2054..2257)
                     /locus_tag="PTC08_000244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1659 domain-containing protein"
                     /protein_id="HDK5681779.1"
                     /translation="MNINHLTLILTQTTTSAEGKPKKASRRFTQLKTDASHEDLKAFS
                     QMIEKLTGEQYDAIELMTSENIQ"
     gene            2400..2951
                     /locus_tag="PTC08_000245"
     CDS             2400..2951
                     /locus_tag="PTC08_000245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HDK5681780.1"
                     /translation="MNCVDPIREMRDIHRMYDFLQSHSIRDYLFFKFAIHTGVKLVGL
                     LNLKVSQVMHDDGTIIEKWDVSQSQEVSVRIPNSLREELKAYIDAEALIKTDLLFRSK
                     RTQKGLSRQQAYRIINTAAQQLGLEHIGLTTLRKTFAYHAFESGISISMIQKYLGHQT
                     SHETMKFIGVPKKEMDTTIALNL"
     gene            2973..5363
                     /locus_tag="PTC08_000246"
     CDS             2973..5363
                     /locus_tag="PTC08_000246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000060776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4040 family protein"
                     /protein_id="HDK5681781.1"
                     /translation="MMLSGLLLILIVVMGALVISMQWQTTRLPHWIAMLAPIISSIVF
                     IFYTPQVLNHQQIVETIQWFPALDINLILRLDGLGLFFALLISLMGVAVFFYATRYLS
                     HQHDDLPRFYLYLVLFMFSMLGIVLSDNTIILYMFWELTSVSSFLLISYWYDSSESQK
                     GAVTSFMVTVFGGLAMLVGLIMLYFVTGTNVISEQLNQRHDIVGHPLFIPIMLMLLLG
                     AFTKSAQWPFHFWLPKAMAAPTPVSAYLHSATMVKAGIYLLLRYTMLLGLSHAYIYLV
                     TGVGLLTMIFGSMTALKQYDLKGILAYSTISQLGMIMSMVGLGGGIAQATDTHMIKIY
                     AYVLFAAIFHLFNHALFKGTLFMGVGLIDHETGTRDIRKLGGLRRRLPVTMVVMFAAS
                     LAMAGVPLFNGFISKEMFFESLIEAHHLSAFNVPLMIVIALVGWLASIFTFIYALYLI
                     KTTFFGELRIERHVHEPRLMILPATVLALCLPLIFIVPQWIGIHVITPAFRGVVHTEA
                     IVQTAPHLAQWHGFNLPLLMSVTVIVLGIVGVFSVDRLRKRFLSAQENALSVENIFHT
                     SYESLERVSGYGLRHLMNNRLNSYIIVTLLIYFTINVYGLIRAGVPELYDIKVTDYHI
                     FHILLLVTIMLIGFALIFIRQRLTMVILTGGIGYIVTLFFILMRAPDLALTQLVTETI
                     TTVLFIVSFSRLPNVPRGQFNFKKEAVKIAISLMTAITVVGLVFMIQQASALETISVF
                     YHDAYEKSGGKNIVNAILGDFRALDTLAEGLVLIIAGLGIYTLLNFKDRRGQDERE"
     gene            5350..5775
                     /locus_tag="PTC08_000247"
     CDS             5350..5775
                     /locus_tag="PTC08_000247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000661906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="monovalent cation/H+ antiporter subunit B"
                     /protein_id="HDK5681782.1"
                     /translation="MKENDLVLKTVTRIVIFIILTFGFYLFLAGHNNPGGGFIAGLIL
                     SSAFILMFLAFDVAQVLDALPIDFRKLMIIGALVSLTTAIVPVFFGKNILYQADWYVK
                     FPYFGEVHLSTIMFFEAGITLSVVGVVVTTILSLSGGKS"
     gene            5772..6116
                     /gene="mnhC2"
                     /locus_tag="PTC08_000248"
     CDS             5772..6116
                     /gene="mnhC2"
                     /locus_tag="PTC08_000248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter Mnh2 subunit C"
                     /protein_id="HDK5681783.1"
                     /translation="MNIILLIVIGFLVFIGTYMVLSKNLIRIVIGIAIFTHAGNLIIM
                     SMGEYTPQKTEPLIVGSNQNFVDPLLQAIVLTAIVIGFAITAFLLVLVYRTFKVTKED
                     EIDVLTGGEEDE"
     gene            6109..7608
                     /locus_tag="PTC08_000249"
     CDS             6109..7608
                     /locus_tag="PTC08_000249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter subunit D"
                     /protein_id="HDK5681784.1"
                     /translation="MNDNLLAVPILVPLICALFLVILHRQVRLSRRIALGALLISFIV
                     SLIMLIEVMKNGPMTLDFGDWPAPFGIQYVGDPLSLILVTTTFLVVFMIVAFGFGRGE
                     KRASRYYLLSFILFLTTGVVGSFLTADLFNLYVMFEIMLLASFVLVTLGQSVEQLRAS
                     IIYVVLNVIGSWFFLVGIGLLYRQIGTLNFTHIAIRIQELHDPTAIHLVAMSFIVAFG
                     SKAALVLFMWLPKAYAVLNTELAALFASLMTKVGAYALIRFFTLIFNQSGDIVEPLLI
                     VMSCLTMLIGAIGTVAYKDIKKIAAYQVVLSIGFVIFGLGTHTFYGVNGAIFYLVNDM
                     IVKALLFFIIGIIVYTTGYRQYRHLKGLAKKEPWLGVALIIVTLAIGGVPPLSGFPGK
                     LLIFMGAIQHQHYIGLTLMILTSLIGMFSLFRVFFYMYAGNDVKGAEMDYKPIRVNRK
                     TIVMFMTGVTLAMGLFAPIIYKVTEQATNLSMDPHQYEKMVNPELRGGS"
     gene            7609..8091
                     /locus_tag="PTC08_000250"
     CDS             7609..8091
                     /locus_tag="PTC08_000250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001071973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter subunit E"
                     /protein_id="HDK5681785.1"
                     /translation="MRQIGLNVMIAFLWVLFQDEDAFRLTTFVTGYIIGIVVIYIVHK
                     FFDQEFYPKKVWVSIKFLAVYLYQLLTATISITNYVLFKTNQMDPGLVTYETQLDKDW
                     EITFLTILIIITPGSTVIRVNREPSIFLIHAIDTTEKEKKSLLKSIKQYEELIVEVTK
                     "
     gene            8088..8381
                     /locus_tag="PTC08_000251"
     CDS             8088..8381
                     /locus_tag="PTC08_000251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000616642.1"
                     /note="subunit F of antiporter complex involved in
                     resistance to high concentrations of Na+, K+, Li+ and/or
                     alkali; Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HDK5681786.1"
                     /translation="MIEALTQFLLSSALVIFAISLVVVLFRLVKGPTTADRVVAFDAM
                     SAILMSTVGVLSLLFETFSFLDSVLLIAIISFLSSVTISRFIEGGNVFHGDDK"
     gene            8365..8811
                     /locus_tag="PTC08_000252"
     CDS             8365..8811
                     /locus_tag="PTC08_000252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter subunit G"
                     /protein_id="HDK5681787.1"
                     /translation="MAMTNDIIELLAAFLVFAGSLIALVSAVGLVRFRDVFLRIHAAT
                     KASTASVLLTLVGVFIYFIFAQGYYSVRTLLALVFINITAPVGGHLISRAAYRTGAYM
                     YQKNASQQNTDLNKEHLDEEAKRQIRIEKRAKRRKRIYSRLDKDDT"
     gene            complement(9448..10365)
                     /locus_tag="PTC08_000253"
     CDS             complement(9448..10365)
                     /locus_tag="PTC08_000253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002501435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein"
                     /protein_id="HDK5681788.1"
                     /translation="MKRIFAIAILFVLLAACGINKGDESEHKLKIVTTNSILYDMTKN
                     ITGDKAEIHSIVPVGQDPHEYEIKPKDVQALTDADVIIYNGFNLESGNGWFEKALKQA
                     NKSIKDDSVIQASKNVKPIYLKQGEKSEHNIDPHAWLSLGNGIEYVKTIKSALENADK
                     THAKDYDKQGTEYLSKLEKLNKESKDKFNDIPKEKRVMITSEGAFKYFAQQFDVKPGY
                     IWEINTENQGTPEQMKQAVDFVKENHIKNLLLETSVSDKSMKSLGEETGAKIYGTVYT
                     DSIGKKGSDGDSYYKMMESNIKTIHESMQ"
     gene            complement(10365..11204)
                     /locus_tag="PTC08_000254"
     CDS             complement(10365..11204)
                     /locus_tag="PTC08_000254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HDK5681789.1"
                     /translation="MSFVQHLFEYQFLSRAMLTAILVGVVCGVVGCLIILRGLSLMGD
                     AMSHAVLPGVALSFLMNIPMFIGAMVTGMLSSIMIGYISEASKTKKDAAIGITFTTFL
                     ALGIVLISVIHSATDLYHILFGNILAITQYAFHTTLAVSIVVLALILILYRPLKMSTF
                     DPIFSRMSGLNTTMIHYFVMLLLALVIVASVQTVGVILVVALLITPASTAFLFTKKLS
                     TMMIVSSIFSVISSTLGIYMSFKLNLPSGAVIVLISAVLYGLTFGIIKLINLLQKGAF
                     QTS"
     gene            complement(11179..11955)
                     /locus_tag="PTC08_000255"
     CDS             complement(11179..11955)
                     /locus_tag="PTC08_000255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter ATP-binding protein"
                     /protein_id="HDK5681790.1"
                     /translation="MLSIENLNLHLGQKHVLKNISLDLPFNGEMIGIMGPNGSGKSSL
                     IKSIIGELPAKGKVTLNQQPAQQQLTNMTYIPQKSVLDLDFPINVQDLVLTGCYQEIG
                     WFRRVPKAIREKRDTLLKELELYELRKRQLHALSGGQLQRVFIARALMSDSLVYLLDE
                     PFVGIDFKSERIIFEKLQYLKQQGKLILIVHHDLSTAGQYFDRILLLNQSIAFLGDSA
                     EALQPKNIESVFLSRYHQAKKDTPLHRKESAQHVVRSTPL"
     gene            12077..12724
                     /locus_tag="PTC08_000256"
     CDS             12077..12724
                     /locus_tag="PTC08_000256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020220035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent transcriptional regulator"
                     /protein_id="HDK5681791.1"
                     /translation="MLTEEKEDYLKAILSHDGIDTYVSNKTLSRFLNIKPPSVSEMVG
                     RLEKEGYVMTKPYKGVKLSELGLSYTLDVIKRHRLIELFLIEVLNYTWEEVHVEAEVL
                     EHRVSKLFVERLDELLKYPKTCPHGGVIPRDNHFEEIYKIPLLSFEEGDVVTIRRVRD
                     RSELLVFLSSKALSIGDTVKVIAKDDINRLMELENKGEKIVLSYQNAEVIFGEKA"
     gene            complement(13120..14118)
                     /locus_tag="PTC08_000257"
     CDS             complement(13120..14118)
                     /locus_tag="PTC08_000257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HDK5681792.1"
                     /translation="MKNERYSKDNIYLCIGLISLVIVGLLSMMVGSDVIRFSDVIAYF
                     INPSASAYQFTLEVLRLPRITLAILAGTALGLSGLLLQNVLKNPIASPDIIGVTGGAS
                     LSAVLFITWFSHLSIHLLPLFAITGGTVAMFILMSFQMNYQIRPSTLIIIGIALQTVL
                     MGITQGLLLTTKQLSASKAYTWLVGSLYGASFQDSLILCGALLLMTPLLWVIIPRMKI
                     AALNESVATGLGLHIQQTRLLQIIVATLLVSIAISFVGNIGFIGLIAPHIAKTLIRTS
                     TIKQFIMTACIGAISLMVADLISRTLFLPKEVPAGVFIAAFGAPFFIYLLLTVKKL"
     gene            complement(14115..15110)
                     /locus_tag="PTC08_000258"
     CDS             complement(14115..15110)
                     /locus_tag="PTC08_000258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000925002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HDK5681793.1"
                     /translation="MSLKPIHHLFIASACLVIVSFLSLMIGNTLVSLPQLIQALFHFD
                     GQNDVHTLVTGSRASRTIIALLTGAALAVAGLFMQVLTRNAVASPGLFGVNAGAVFFI
                     VTGVTWIRVHSFEALVVMAFVGAILVTILVVGLGMFKQARFTPQRVILAGASISMLFT
                     AFTQGILIMNETNLQGLLFWLSGSVSLRNIWDIPWMIVIILLFLIAGFFMAPHLNILM
                     TSDEIATGLGQNVKRIKWVIVLMISVLAGSSVALAGSIIFVGLIIPNIAKLILPPRYQ
                     LLIPYTALLGSCLMISADIVARVIIRPLELPVGIITGILGALVLIYLMKKGIYRV"
     gene            complement(15127..16110)
                     /locus_tag="PTC08_000259"
     CDS             complement(15127..16110)
                     /locus_tag="PTC08_000259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-siderophore ABC transporter
                     substrate-binding protein"
                     /protein_id="HDK5681794.1"
                     /translation="MNKLLQLLVLPLVLLLVLSACGNSSHKEASDKKADTTTIKHAMG
                     TTEIKGEPKRVVTLYQGATDVAVSLGVKPVGAVESWTQAPQFEYLRDDLKDTKNVGQE
                     PAPNLEEISKLKPDLIVASKVRNEKVYDQLSKIAPTITTDTVYKFKDTTEMMGKALGK
                     EKEAQSLLQKYDDKVKAFQKDAKAKYGDAWPISASVVNFRADQTRIYAGGYAGDILQD
                     LGFKRPEGQQKEVDKGKDIIQLTSKESIPLMDADQIFIFKSDPKAADADLVQKTEQEW
                     TSSTEWKNLDAVKKGHVVDGVDEITWNLAGGYQSSLKLIDDLYEKLDIKKQ"
     gene            16347..17324
                     /gene="sbnA"
                     /locus_tag="PTC08_000260"
     CDS             16347..17324
                     /gene="sbnA"
                     /locus_tag="PTC08_000260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-diaminopropionate biosynthesis protein SbnA"
                     /protein_id="HDK5681795.1"
                     /translation="MIKNEATYDSLLSCIGQTPIVQLQRLFPEHRVLAKLEYMNPGGS
                     MKDRPAKFIIERGLATGEINASTHLIESTSGNLGIALAMIAKIKGLKLTCVVDPKISP
                     TNLKMIESYGANIEMVEEPDEHGGYLMTRIHRVKTLLAETENAYWINQYANDLNWQAH
                     YHGAGTEIVEAVEEPIDYFVAPVSTTGSIMGMSRKIKEHHPNAQIVAVDAKGSIIFGD
                     TPCNRELPGIGASRVPEILNAAEIDDVIHIDDYRSALGCHQLVDQEGIFAGGSTGAII
                     SAIQQLTQKVEPGATIVTILPDRGDRYLDLVYSEKWFEQLKNKQESETY"
     gene            17326..18336
                     /gene="sbnB"
                     /locus_tag="PTC08_000261"
     CDS             17326..18336
                     /gene="sbnB"
                     /locus_tag="PTC08_000261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-diaminopropionate biosynthesis protein SbnB"
                     /protein_id="HDK5681796.1"
                     /translation="MKHPLLYLNRTDIEQAGGAQSQIYVDALTEALTAHANQDFVQPL
                     KPYLRQDAENGHIADRIIAMPSHIGGDHSVSGIKWIGSKHDNPSKRQIERASAVIILN
                     DPETNYPIAVMEASLISSMRTAAVSAIAARHLARPGFENLTIIGCGLIGDKQLQTMLE
                     QFDHIQKVYLYDQFEVASQKMIEKWSAQRPDMTWVQAQSAREAVENGDVVIPCTVTDQ
                     PYIEYDWLRQGAFVSNISIMDVHKEVFIKADKVVVDDWSQSNREKKTIHQLVQDGLFS
                     REQLHAELGQLVTGEKVGREHDDEIILLNPMGMAIEDIASAYFIYQRAQAENIGTTLS
                     LY"
     gene            18348..20123
                     /gene="sbnC"
                     /locus_tag="PTC08_000262"
     CDS             18348..20123
                     /gene="sbnC"
                     /locus_tag="PTC08_000262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="staphyloferrin B biosynthesis protein SbnC"
                     /protein_id="HDK5681797.1"
                     /translation="MVSEHEHNVTRAQQYILKDLVDALLFEDLGGIASTSERLTIQQQ
                     TYLRYEKKGIVLLIPVYYSGLNVYRSNGEAVFHIESKTCMPLTVHELWELFVTMNADL
                     AAEWAHARFAEGLEAAVTELTAQYDGFKASEHPFILSEQFASLKDRPFHPVAKEKRGL
                     TAEDYAVYQAEYHQPLAVQTVAIRKSHVIQGKGATDEQYAQFWGDTLVRCQQALIEKG
                     YDTEDYVIFPVHPWQYEHVLPVQFSAEIKQGIVVLLDVTMGQYLSSSSMRTLIPLAAP
                     FTHLKVPFSMQSLGALRLTPTRYMKNGEAGETLLRDIIAQDTSLNGRVKLCDETVWWS
                     YMNEAQDIFQDQSGHLTMQLRHYPESIKDAQMVTSMASLAAHESTLYERILETDHPTT
                     EQINALFEQVSDAFLKMTLALMKYGVLPELHGQNVLVVFREGHVAEFVLRDHDTVRIF
                     PEWLTAQGFKLPNYAVRKDTPNTLLNEDIETFFAYFQTLAVSVNLYAIVDALVDVFKV
                     SEMELMTQLRQTMQHHIDTIDWLPGTSEEVERIIFTQETWPFKRILLPLLHQRGDGGG
                     SMPSSIGRVPNPMKRTDNHRTNVAT"
     gene            20095..21357
                     /locus_tag="PTC08_000263"
     CDS             20095..21357
                     /locus_tag="PTC08_000263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDK5681798.1"
                     /translation="MIIEQTWRRNFRTLWLGQFMAIAGLTVLVPLLPIYIASLKQLNI
                     FEIQLWSGIAIAAPAITTMLASPLWGKLGDRLSRKWMVLRALFGLGLCLLLMAFCTTP
                     FQFVLVRLLQGLFGGVVEASSAFASGEAPESERGAVLGKLQSAVSAGSLVGPLIGGVL
                     ATVLGFQALLFSIGLITLLMSILGVFFLIETTHTHANTERPQVKKSVRQSMKCLLCTQ
                     LTCRFIIVGVLANFAMYGMMTALAPLVSSVNHVHIDDRAAVGILQSAFWTASMMSAPF
                     WGYFNDKAYVKNVYIIASILCGISVLWQGVATDLWMLGIARVLQGLTYSALIQSVMFV
                     VVNASHHQLKGTFVGSTNSFLVVGQIVGSLSGAIVTSYTAPATTFILMGVIFALSSTL
                     LWTSHIKNQKINPILTGFWEVKEQRAKL"
     gene            21344..23062
                     /locus_tag="PTC08_000264"
     CDS             21344..23062
                     /locus_tag="PTC08_000264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="siderophore biosynthesis protein SbnE"
                     /protein_id="HDK5681799.1"
                     /translation="MQNFKMNKRAEHAALERLLNIYFREKGCSPKKEGTSQWHITLKD
                     DLTLRGKLRYVSSMGHHMYDSAVYLESIGHVSQLTPLEAIRYILEAIAYDETSQTETT
                     IVEAVYQDICNSISRTTRYLDQARRHAPPHQNHYIASEQSLYLGHPFHPTPKSATGFT
                     DEDIEQYAPECHVAFQLHYLAVDPALLVERYVPNYEARVDETVRQLAQIEEDEYTVTY
                     RLLPVHPYQIEVLKQQPTIQQHLANGTIQDLGQRGHVVYPTSSVRTVFVKALNIYLKL
                     PIQVKITNFVRTNDFEQIERTLDAAEIIAAIKPEYETATFKLMFEQGYRALQPDNDAV
                     IDILANSAMIVREGIEQYDSLEEIHVLASLFETMPDEPTSKLGQAWLRSGLSREDWLT
                     VYLNQVIWPMLELFAHTGISLEAHVQNTLVALEEGRPTVCYVRDLEGICVSERIATAQ
                     GMIPHQISADSPVVYTHHEAWHRFKYYVIVNHLGHLVSTLGKATGDEEMLWQTVNRTL
                     ETWQERAEGHDVLMQCLEDLRYNPTFAAKANLMSKLQERGEDPIYIKIPNPISQEEDS
                     IYETTD"
     gene            23046..24800
                     /gene="sbnF"
                     /locus_tag="PTC08_000265"
     CDS             23046..24800
                     /gene="sbnF"
                     /locus_tag="PTC08_000265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="staphyloferrin B biosynthesis protein SbnF"
                     /protein_id="HDK5681800.1"
                     /translation="MKQLIEQVRQRIMQQLVTSLIYEDVVHYEQLPSEDDECDTYTIE
                     GEAVTYRVQLQQSDSFERLRISAPVWRIADGEEAVTLDYAQLLREVRFTFDKDEQKLE
                     DFIIELLQTELKDTQAQRYRAQQSQMSLTAFDDYESYAMEGHMYHPSYKSRLGFTLDD
                     NVRYGPDFRPSFQLQWIAIAPDHVETTVSASVDTVALLQRQLGTETLATFEKTLQQHG
                     HTLETMVLIPVHPWQFEHVIQVEFAEAWMHGEMLWLGTSDEMYVPQQSIRTLTPTDRN
                     KYYLKTPISITNTSTKRVLAPHTIENAAQITDWLKHIQSKDTYLQQHLQTVFLGEVLG
                     HAYHNPTLSEVKQQRIYGALGVIWRENIHHYLALHESAIPFNALYSVDADNRPLIDAW
                     MSKYGVEQWMAQFFSVAVTPLIHMLYHHGIAFESHAQNMMLIHENGWPTRIALKDFHD
                     GVRFKPSLLSEVAQNPRLRDTPEAHRKVNRNSFIETEDVNLVRDFLHDAFFFINIAEI
                     IDFVARQYKLKASEQWTMVRTVIEQYQQQFPNLENYRHFDLFVPTIQVEKLTTRRLRE
                     DVALRLHEVRNPLRRSEV"
     gene            24797..25591
                     /locus_tag="PTC08_000266"
     CDS             24797..25591
                     /locus_tag="PTC08_000266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HpcH/HpaI aldolase/citrate lyase family protein"
                     /protein_id="HDK5681801.1"
                     /translation="MKSLSLKRNLAEGKVQYGLMNSIPDPLVIEIIAASGYDFVVIDT
                     EHVAINDETLAHMIRAAETANIIPIVRVTAAIERDIIKVLDMGAKGIVVPHVNDRETA
                     ERIVKLSRYYPEGMRSLNGGRVARFGEIPLKEAMAEANASICVIAMIENMQGVRAIDE
                     IVQVEGLDMVIEGAADLSQSLGIPWETSHDQLQRAIQHVYTTTTTAGKQFCALPRDDQ
                     QVQRWQQQGVQCFLMGDDRGKLYRHLKHNLAQVKEVTAHDGDSYIS"
     gene            25566..26768
                     /locus_tag="PTC08_000267"
     CDS             25566..26768
                     /locus_tag="PTC08_000267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III PLP-dependent enzyme"
                     /protein_id="HDK5681802.1"
                     /translation="MTAIHTLVKQLKQQGPLCHFIYDMDGLRQHLETVTSQLPDNCEM
                     YYAMKANSESEILAAIQPHVAGFEVASEGEIAKALVHTTAEHVIFGGPGKTDESLRYA
                     IQQGIRRIHVESLYELERLNALLKQENATMSILLRVNLAGPFPAATLHMAGQPTQFGI
                     DETEVDTVIATAQNMPRIQLEGFHFHSISNNLDAALHLQVMTLYFQKAKAWAAQHDFT
                     LQHLNVGGGIGVNYADLNEQFDWTYFTTELSALIEEEGLQNITINFECGRYMVAHIGY
                     YVTEVLDIKRVHGAWFAILKGGTQHFRLPVSWQHNHPFEILPLGEQANQIAPRTIEQQ
                     AVTFVGQLCTPKDVFAKAVEIPALSTGDAVIFIYAGAYGWSISHHDFLSHPHPQCIYW
                     SSEKEGES"
     gene            26765..27529
                     /gene="sbnI"
                     /locus_tag="PTC08_000268"
     CDS             26765..27529
                     /gene="sbnI"
                     /locus_tag="PTC08_000268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional transcriptional
                     regulator/O-phospho-L-serine synthase SbnI"
                     /protein_id="HDK5681803.1"
                     /translation="MKQIYDTLQLIPVDKIDLHEAFEPSRLEKTKESIAKEQHLRHPV
                     LVVKTLFGRYMVIDGVHRFMSLKALGCEVIPVQVIQRTQYSIGSWHHKIPNGAWCEGL
                     TDEELLPWTTEVRDETPFITMCDQQTEHYLYAADLTADKLDIWKKVVNSYSASCNVER
                     VPHSACLCLDSNDILMKYQPLQIGEIEAVVQRGQTVPAGVTRFNIAGRCLNLQVPLHL
                     LKNSNLGNQEQWHTFLQKKIESMRCYTEKIYLIEAE"
     gene            complement(27812..28555)
                     /locus_tag="PTC08_000269"
     CDS             complement(27812..28555)
                     /locus_tag="PTC08_000269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M50 family metallopeptidase"
                     /protein_id="HDK5681804.1"
                     /translation="MHGYSWITSPIPISFILLLCIAGLYLVSRHYAYRPIFSLLDIAL
                     NYIPVLTHEFGHVLFNRLSGGRVRDFVVVTTRRERNATGQQGYAVTASRSRSGHIITT
                     LGGYLMSPIMLILGLYIQSKGQGALFIMLYTLVFIYFTWKTSRKAVPLLIIAFLILIG
                     YLGIQSENLTNYSFIYMLVYHFILGTLLGEIIQSTITIVQLTFARPQPEWDGTALKML
                     TKLPTVFFSSLWIVTNFLAIYYFIQYVLL"
     gene            complement(28629..29048)
                     /locus_tag="PTC08_000270"
     CDS             complement(28629..29048)
                     /locus_tag="PTC08_000270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020220039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nodulation protein L"
                     /protein_id="HDK5681805.1"
                     /translation="MTHMIGHVQNHCYIEPPFYFDDDYNIHLGDNVYVNKHNTWFDIG
                     LFLSTITSKIRPNVQLITVNHPLDPTKRRSGIEQGPKMTIEDDVWIDADVPALPGVTV
                     HQGATVAARRIVTRAVPASTDVADNPTKVIRQLNDTL"
     gene            29421..30242
                     /locus_tag="PTC08_000271"
     CDS             29421..30242
                     /locus_tag="PTC08_000271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WecB/TagA/CpsF family glycosyltransferase"
                     /protein_id="HDK5681806.1"
                     /translation="MAKALPTGHHEGTFPSRDTTVEGTYTFNEKKAQVQVMNVMFDNV
                     TLMDMHQNILKYMHTETKHNLFIVTANPEIVHYASENPLYAQMLKQADFIVPDGTGIV
                     KAARILGQSLQERVPGIEVMETCLNIADLERKKVFLLGATSPVVEKAARRIQRQYPHI
                     DIQTHHGFIDITDQNVIEQVRDFNPDFIFVGMGYPKQEQWIQHNRHHFDHTLMMGVGG
                     SIDVYSGEVKRAPYVWRAMNLEWAYRALTDIKRIHRLKRIPKFVVGVYKQKYLGK"
     gene            complement(30456..31250)
                     /gene="tagH"
                     /locus_tag="PTC08_000272"
     CDS             complement(30456..31250)
                     /gene="tagH"
                     /locus_tag="PTC08_000272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="teichoic acids export ABC transporter
                     ATP-binding subunit TagH"
                     /protein_id="HDK5681807.1"
                     /translation="MNPTVSINEVTKEYRIYRNNKERIKDAIWPKHKNKTFYALKDVT
                     FQAYAGDVIGLVGINGSGKSTLSNMIGGSLTPTHGHIDKTGDVSVIAINAGLNGNLTG
                     MENIEFKMLCMGFKKNEIKALTPEIVEFSELGEFIYQPVKKYSSGMRSKLGFSISATI
                     NPEILVIDEALSVGDQTFTQKSLKKIYEFKEDEKTIFFVSHNLRQVKEFCTKIAWIEA
                     GQLKDFGSVEDVLPKYEAFLKDFKKKSTAEQKAFRQALDENRFVIK"
BASE COUNT         9372 a         5744 c         6737 g         9448 t
ORIGIN      
        1 aaaaagcgtc ctcaaaaaag tgcatgattc acacactttt gagaagacaa tgaatcaaat
       61 agcgtatgct tagttgaact gaatgataat aatcgcaata ataatgagca taaaacctaa
      121 taagcgctgt ttcgtaatat gacgatgtgg tacaccgaat agtccgaaat ggtcgatgag
      181 taagcccata ataatttgtc cgaccatcac agtaataagt gtgaaagtga ccccaatcac
      241 aggcgttaaa ataatattcg ttgtgacgaa aatgacacct aatgccccgc caataaagtg
      301 ccaccatttc aatggaccat gctgctcaga ggttgtatga attttaacgt gtctgtgtag
      361 catcaacgtc aaaataatga gtgctgatgc ccctactgta aatgaaacta atgacgcaaa
      421 gaagggggag tggagtgttt ggcctaaatg actattgatt gctgtttgaa tgggcggcgt
      481 aaaaccaatg atcataccga caagcatcca tggcccatta tgacccgatt gtgccaattg
      541 cttagcgttc ttttgcagat tcatcaaaat aataccgatg agtaataaca caatcccaag
      601 cactttcatc acatgtaacg cttgaacatc tacattgaac caaccgaacg tatcgatcaa
      661 cacactcatc aaaatttgtc cggtaatcgt tgtcacgacg gttaacgatg cgccaatacg
      721 tggtaacaaa atcatattac cggttaaata aatcacgccc atcaatccac caacatacca
      781 gtaataatca aaatggtaat gtccgaaagc ttctgcagtc agtaagtgtg gattgagtat
      841 aaagttgagt atcacgagca ataatgttcc gaccgtaaat gaaatggcag aagcatataa
      901 agaagattgc gtgaaccggc ttaacctaga attaatagag gtctgtacag gaatgacagc
      961 accagctact aaccctaaaa tcagtaagag tgaaagcata atcaaccatc cttttgttta
     1021 actgtgttat cattatagca aaatgtctat gtgatagtgc tatatttgtt tgcgaacaat
     1081 ttcaataggg agacatacag ggtaaaagat gtggtttgaa acctattggt tattataaaa
     1141 cggtaataga ttatagtaaa ttttgcatgt gaatatgtat gatcatcatt ggtaaccgca
     1201 ccatgactaa gaatgaagtt aaaggaaagt tgtgatattt tgaaggaaca tgaaatcgta
     1261 cgtgtgattg atgaccatct cttttttatt aatgttaatg cgtcgtcaaa gcttgaagag
     1321 gggcagtatg ttgaagtgct taatcctttt aaatcttata aaacgttagc acgtattgat
     1381 gaagtatacg aaaaatatgc gatttgtcaa aagcttggga agtttaagat tttttatggt
     1441 gatgaagtga gaattcgtcc gaactatcaa tctaatgtgt aaatatagaa gttacgaaag
     1501 tggcgagaca tcaaattttt gctagcccga gatgatacac atcttaaatt attgtgtcta
     1561 ttcatccgga gttattatga atttgagtgt gcaaagactg gggaatctct ctcggtcttt
     1621 tttatttgtt ttgaatatgt tcggttttga gattaaggag ataccgatag attgatataa
     1681 acgcaaaaaa ggccaggata tttaattttc ctagcctcta tctacttatg gatttgtaat
     1741 tcattaattc gaaatcgaga gtgaattgga tacaaaaatg gatgctattg atttttgatt
     1801 ttcacttctc taacgcgaca tattaaaaca acacaatgac agatttatca atgacttgag
     1861 cgcctgccac tttgacgaca gggccatgca tcgtcttcaa tacatttaat gccactaact
     1921 tttccgcttc ttcttgaact acttcttttg tgattgtccc tttaatgtta ggtaaactta
     1981 atttgaaagt tttttgtaat gcgtctaaaa aagtgatttc taaagtttta acgttcatcg
     2041 taattgctcc tttttattga atattttctg atgtcattaa ttcgatagcg tcatactgct
     2101 cgccagtcaa cttctcaatc atttgactga aagcttttaa gtcctcgtgt gaagcgtctg
     2161 tttttaactg tgtaaagcga cgtgatgctt tcttaggttt tccctctgct gaagttgttg
     2221 tttgcgtcag aataagtgtt aagtgattga tgttcatgtt tctgacctcc tttcactata
     2281 tatatcgaaa tccaacgcaa aaaatcacac ccctcatgag aaaaaatttt gtgaaagttg
     2341 tttaatgtta ctcaaatata gtttataatt aaataagaaa cataaaggag ggggaacgag
     2401 tgaattgcgt ggatccaatt cgtgaaatga gagatattca taggatgtat gattttttac
     2461 aatcccattc gatacgtgat tatttgtttt ttaagtttgc gattcatacg ggtgttaagt
     2521 tagtcggatt attaaattta aaggtcagtc aagtgatgca tgatgatggc actatcattg
     2581 agaaatggga tgtgtctcaa agtcaggaag ttagtgtgcg tatcccgaac agtttaaggg
     2641 aagagttaaa ggcgtatatc gatgctgagg cgttaattaa gacggactta ttatttcgct
     2701 ctaaacggac gcaaaaagga ctgagtcgac aacaagccta tcgcattatt aatacagcgg
     2761 cacagcaatt aggcctcgaa catatcggct tgaccacttt gagaaaaact tttgcctatc
     2821 acgcgtttga atctggcatt tctatttcaa tgattcaaaa gtatctcggg caccaaacgt
     2881 cacatgaaac gatgaaattt atcggtgtgc ctaaaaaaga aatggatacg acaattgctt
     2941 taaacctata aatatagaga aaaggaggcg tgatgatgct tagtggtttg ttacttattt
     3001 tgattgttgt gatgggtgca cttgtcatct caatgcaatg gcagacaaca cgtttaccgc
     3061 attggattgc aatgcttgca cctatcattt catcaattgt gtttattttt tatactcctc
     3121 aagttttaaa tcatcagcaa atcgttgaaa caattcaatg gttccctgca ctagatatta
     3181 acctcatctt gcgcttagac ggactcggtc tattttttgc gctactgatt tcacttatgg
     3241 gtgtggcagt atttttctat gcgacacgct atttatctca ccaacatgat gatttgcctc
     3301 gtttttactt gtatcttgtc ttatttatgt tcagtatgtt gggcattgtc ctctccgata
     3361 ataccatcat tctttatatg ttttgggaat tgacgagtgt gtcatcattt ttattaatta
     3421 gttattggta tgattcttca gaaagtcaaa aaggggcagt gacgtccttt atggtgacgg
     3481 tctttggcgg tttggccatg ctcgtcggat tgatcatgtt gtatttcgtg acgggaacga
     3541 atgtgatcag tgaacagctg aatcaacgtc atgacattgt agggcatcca ttatttatcc
     3601 ctatcatgtt gatgttgttg ctaggcgcgt ttacgaaatc tgcacagtgg ccgtttcatt
     3661 tttggttacc gaaagcgatg gcagctccaa cgccagtgag tgcttatttg cattcggcga
     3721 cgatggtcaa agcaggtatc tacttgttac ttcgctatac gatgttgctc ggattgagtc
     3781 atgcgtacat ttatttggtg acaggcgtgg gcttgctgac gatgatattc ggttctatga
     3841 cagcacttaa acaatatgat ttgaaaggga ttctcgctta ttccactatc agtcagcttg
     3901 ggatgatcat gtcgatggtc ggtctcggcg gtggtattgc acaagcgaca gacacgcaca
     3961 tgattaaaat atatgcgtat gtgctgtttg cggcgatttt ccatttgttc aatcatgcat
     4021 tgtttaaagg gacattattc atgggtgtag gcttaatcga ccatgaaacc ggtacacgtg
     4081 atatacgaaa gctcggtggt ttgagacgcc gcttacctgt gacgatggtc gttatgtttg
     4141 cggcatcatt agcgatggca ggagtcccat tgtttaacgg ctttatcagc aaagagatgt
     4201 ttttcgaaag tttaatagaa gcacatcatt taagtgcgtt taatgtgcca ctcatgattg
     4261 tgattgcatt ggtcggatgg ttggcaagta tttttacatt catttacgcc ttatatttaa
     4321 ttaaaacgac ctttttcgga gagctccgta tagaacgtca tgtccatgaa ccgcgtctga
     4381 tgattctacc tgcgacggtg ttggctctat gtttaccgct catctttatc gtgccacaat
     4441 ggatagggat acatgtgatt acaccagcat ttagaggtgt cgtgcataca gaggccattg
     4501 tccaaacggc accacacctt gcacaatggc atggctttaa tttgccatta ttgatgagtg
     4561 tgacagtgat tgtgctcggt attgtaggtg tgttttctgt tgatcgttta cgcaagcgct
     4621 ttttatctgc tcaagagaat gcattatcag ttgaaaatat tttccatacg tcatacgagt
     4681 cactggagcg tgtatcaggc tatggattac gtcatttaat gaacaaccga ctcaattcct
     4741 acattattgt aacgctactt atttatttca ctattaatgt atacggctta atacgtgcgg
     4801 gcgtaccgga actttatgat atcaaagtga cagattacca catttttcat attctgttac
     4861 ttgtgaccat tatgttgatt ggttttgcgc ttatatttat tcgccaacgt ttaaccatgg
     4921 tcattttaac aggtggtatc ggttatattg tgacattgtt ttttatttta atgcgcgcac
     4981 cggatttagc attaacgcaa ttagtgactg aaacgattac aacggtactg tttattgtga
     5041 gtttttcaag attgccgaat gtcccacgtg gccagtttaa ctttaaaaaa gaagcggtga
     5101 aaatcgcaat ttcattgatg actgccatca cggttgtcgg cttagttttt atgattcaac
     5161 aagcgagtgc attagaaacg atttctgtgt tttaccatga tgcgtatgaa aagtctggtg
     5221 gtaaaaatat tgtgaatgcg attctaggag actttagagc gctcgatacg ttggcagaag
     5281 gtttagtact gattattgca ggcttaggta tttatacgtt actcaacttt aaagatagga
     5341 gaggtcaaga tgaaagagaa tgatttagtc cttaaaacag tcacacgtat tgtcatattc
     5401 atcattttga cattcggttt ttacctcttc ttggcaggtc ataacaatcc gggaggcggc
     5461 tttattgcgg gattaatttt aagttctgca tttatcttaa tgtttttagc ttttgatgtc
     5521 gctcaagtgt tagacgcgct gcccatcgac tttagaaagt taatgattat cggtgcttta
     5581 gtatctttaa cgactgcgat tgttcccgtg tttttcggta aaaatatttt gtatcaggcc
     5641 gattggtacg tcaaattccc gtattttggt gaagtgcatc tttctaccat tatgtttttt
     5701 gaagcgggca tcacattaag tgttgttggc gtcgttgtta caaccattct atcgttgagt
     5761 ggagggaaat catgaatatt atattactca tcgttatcgg atttttagtt tttatcggca
     5821 catatatggt gttatcgaaa aacttgatac gtatcgtgat tggtattgcg atttttacac
     5881 atgcaggtaa tttaatcatt atgagtatgg gtgagtatac gcctcaaaaa accgaaccgt
     5941 taattgtggg gagtaaccaa aactttgtcg acccattgtt acaagcgatt gtgttaactg
     6001 cgatcgtcat tggttttgcg attacggcct ttttactcgt attagtttat cgtacgttta
     6061 aagtaacgaa agaagatgaa attgatgttc taactggagg tgaagaagat gaatgataat
     6121 ttactagccg ttccaattct tgtgcctctc atctgtgctt tatttctagt gattttgcat
     6181 cgacaagtac gtttgtctcg acgtatcgca ttaggtgcgc ttttgatttc gtttatcgtc
     6241 tctttaatca tgttaatcga agtcatgaaa aacggcccga tgacattaga ctttggtgat
     6301 tggccagccc cgtttggtat tcaatatgtg ggagatccat taagcctcat attagtgacg
     6361 acaacctttt tagtcgtttt catgattgtg gcattcggct ttggacgtgg tgaaaaacgt
     6421 gctagtcgct actatttact gtcctttatt ttatttttaa caacaggggt cgtcggttcg
     6481 tttttaacgg cagacttatt caatttatat gtcatgtttg aaattatgtt attagcgtca
     6541 tttgtactcg tcacactcgg tcaatctgta gaacaacttc gtgcgagtat catttatgtc
     6601 gttttgaatg tgatagggtc ttggtttttc ctcgttggca ttggcttgtt gtatcgccaa
     6661 atcgggacat tgaacttcac acatatagcg attagaattc aagaattaca tgatccaacc
     6721 gcaattcatt tagttgcgat gtcattcatt gtcgcatttg gttcgaaagc tgcattagtg
     6781 ctctttatgt ggttgcctaa agcgtatgcc gtgttgaata cagaacttgc cgcattgttt
     6841 gcttcattaa tgacaaaagt aggcgcctat gcactcattc gattctttac ccttattttt
     6901 aatcagagcg gtgacattgt cgaaccctta ctcattgtca tgtcttgttt gacgatgctc
     6961 attggggcaa ttgggacggt tgcgtataaa gatattaaaa aaattgcagc gtatcaggtc
     7021 gtcttgtcga ttggtttcgt catatttgga cttggaacgc atacatttta tggcgtcaat
     7081 ggtgcgatat tttatttagt gaatgacatg attgttaaag cgttattgtt tttcattatt
     7141 ggtatcatcg tttatacgac aggttatcgt caatatcgtc atttaaaagg gctcgccaaa
     7201 aaagaaccat ggctcggtgt ggcgttgatt atagtgacac tagctattgg aggtgtgccg
     7261 ccgttaagtg gttttcctgg gaaattattg attttcatgg gtgcgattca acatcaacat
     7321 tatatcggcc taacattgat gattttaacg agtttaatcg ggatgtttag tttgttccgc
     7381 gtcttctttt atatgtatgc gggcaatgac gtgaaaggtg cagaaatgga ttataaacca
     7441 attagagtga atcgtaagac cattgtcatg tttatgacag gtgtcacttt agcaatgggt
     7501 ctttttgcgc ccatcattta taaagtgact gaacaagcga caaatttatc aatggatccg
     7561 catcaatatg aaaaaatggt gaatccagaa ctgcgaggtg gcagttagat gagacaaatt
     7621 ggtttaaatg ttatgattgc atttttgtgg gtacttttcc aagatgaaga tgcatttcga
     7681 ctcacgacat ttgtgacagg ttacattatc ggtattgtag tcatctatat cgtgcataaa
     7741 tttttcgatc aagaatttta tccgaaaaaa gtatgggtgt ctattaagtt tctggctgtt
     7801 tatttatatc aattattgac ggcaacgatt tcaattacga attatgttct tttcaaaacg
     7861 aatcaaatgg atccaggatt ggtcacatat gaaacacaat tagataaaga ttgggaaatt
     7921 acgtttttaa cgattctcat cattattacg ccgggatcaa cagtcattcg tgtgaatcgt
     7981 gaaccgagca ttttcttaat tcatgcgatt gatacgactg aaaaagagaa aaagagctta
     8041 ctcaaaagta ttaaacaata tgaggagtta atcgtggagg tgacgaaatg attgaggcat
     8101 taacgcaatt ccttttgtca agcgcattag ttatttttgc aatttcgtta gtcgtcgtat
     8161 tatttcgtct tgtcaaaggt ccgactactg cagatcgtgt ggtcgctttt gatgcgatga
     8221 gtgcgatttt aatgtcgaca gtaggggtac tcagtttatt atttgaaaca ttttcatttt
     8281 tagattccgt attgctcata gcgattattt catttttaag ctcggtcaca atttcccgtt
     8341 ttatcgaagg aggcaatgtt tttcatggcg atgacaaatg atatcattga gcttttagca
     8401 gcctttcttg tattcgcggg aagccttatc gcattagtca gtgctgttgg tttagtccga
     8461 tttagagacg tgtttttacg aattcatgcc gcgaccaaag cttcgacagc atcagtacta
     8521 ttaacactcg ttggcgtatt catttacttt atttttgcac aaggttatta cagtgtacgg
     8581 acattgttag cattagtatt tatcaacatt actgcaccag tgggtggtca cttgatctca
     8641 agagccgctt atcgtacagg cgcttatatg tatcaaaaaa atgcctctca acagaataca
     8701 gatttgaaca aagaacactt ggacgaagaa gccaaacgtc aaatccgtat cgaaaaacgt
     8761 gccaaacgcc gtaaacgcat ctattcaagg ttggataaag atgatactta gttaaaagat
     8821 acaaaagtac ccctctctat gaatgagaag cataaaactt caacatcata gagaggggat
     8881 ttttatcatt ctattttgat tgtatgggta atgcatttga aattgctaga atcagtcttt
     8941 gtcgtcagta tagatgacaa atctagacga acctccctag gcagagttaa caaaaaaaac
     9001 acctcatcct caaaagagta atggagtgga taaggataaa ttgttttcaa acaggagcta
     9061 acctagttcg acaagtcaca ctttcaaaag attgtagaac gattctcgct gatatgaatg
     9121 tcttgacgca taagattgca gagcgaggcg agactcctag catatttaga ataaaacgca
     9181 aactccccct ctatagagaa gggggagttc gcatgaaagt actgttagat ttctgccgtt
     9241 ttcataagct attatatttt agaatgacta tggttcaaat tgcaaaaacc gtgcaagact
     9301 cccgagggat agagccgaag cggaaaatcc acccacgcct cctctctgta actttcaatc
     9361 aaagcgttgg ttagttgtag cgaggccctg ggaaagcgca gcacggttca gcaatacggc
     9421 taaagttaac tgtagaattc taaaatatta ctgcatgctt tcatgaatcg tcttaatatt
     9481 cgattccatc atcttataat acgaatcccc atcgctacct ttcttaccga ttgaatccgt
     9541 ataaactgta ccgtaaatct tagcacctgt ttcttcacca agactcttca tactcttatc
     9601 actcacactt gtttcaagca ataagttttt aatatgattc tctttaacaa aatcaacagc
     9661 ttgtttcatt tgttcaggtg taccttggtt ttctgtgtta atttcccaaa tgtatcctgg
     9721 tttcacatca aattgttggg cgaaatattt aaacgcacct tcacttgtaa tcatgacacg
     9781 tttttctttc ggaatgtcat tgaacttatc tttactttct ttattcaatt tttcaagttt
     9841 tgataaatat tcagtgcctt gtttgtcata atcttttgcg tgtgttttat ctgcattttc
     9901 aagtgctgat ttgatggttt taacatattc aatgccatta cctaagctga gccaagcgtg
     9961 tgggtcgata ttatgctctg atttttcacc ttgttttaag taaatcggtt ttacattttt
    10021 agaagcttga atgactgaat catctttaat cgatttgttt gcttgtttca atgctttttc
    10081 aaaccaaccg ttaccacttt caaggttgaa accattgtaa ataatgacat cagcgtcagt
    10141 taacgcttga acgtctttcg gtttaatttc gtattcgtga ggatcttgac caacagggac
    10201 gattgaatga atttcggcct tatcgcctgt aatattttta gtcatatcgt aaagaataga
    10261 gttcgtagtg acaattttta atttatgctc ggattcgtct cctttattga taccacatgc
    10321 agcgagtaac acaaagagaa tcgctatggc gaaaattctt ttcatcatga tgtttgaaat
    10381 gctccttttt gtaatagatt tatgagttta atgatgccaa aagtaaggcc atataacacg
    10441 gctgaaatga gtacgataac ggcaccactt ggtaaattca atttaaaact catataaatg
    10501 cctaacgttg aactgataac actaaatatg ctagaaacaa tcatcatcgt agacaatttt
    10561 ttagtaaata aaaacgctgt tgaagcgggt gtgatgagta aagctaccac taaaatgaca
    10621 ccgaccgttt gaacacttgc gacaataaca agcgcaagta ataacatgac aaaataatga
    10681 atcattgtcg tatttaagcc actcatacga ctaaaaattg gatcaaatgt cgacatttta
    10741 agtggtcggt atagtattaa aatcaatgcg agaacgacta tgctgacggc taatgtagta
    10801 tgaaacgcat attgagtaat cgcaaggatg ttaccaaaaa gaatgtgata taaatcagtg
    10861 gctgaatgaa tcacactaat gagtacaatc cctagtgcta aaaaggtagt gaaagtaatc
    10921 ccaatagcag catctttttt tgtttttgaa gcttctgaaa tatagccaat cataatgctg
    10981 cttaacatcc ccgtaaccat tgcgccaata aacatcggaa tattcattaa aaacgagagt
    11041 gccacacccg gtaagactgc gtgactcatc gcatctccca tcagtgacaa acctcttaaa
    11101 ataatgaggc aaccgacgac accacaaacg acaccaacta agatggctgt taacatcgca
    11161 cgtgataaaa actgatactc aaagaggtgt tgaacgaacg acatgttgtg ccgactcctt
    11221 tctgtgtaaa ggcgtatctt ttttggcttg atggtaacga cttaaaaata cagattcgat
    11281 gtttttaggt tgcaatgctt cagcgctgtc tcccaaaaat gcgatagatt gattcaagag
    11341 aagaatacga tcaaaatatt gtcctgctgt tgaaaggtca tggtgtacaa ttaaaatcaa
    11401 tttcccttgt tgctttaaat attgcaattt ctcaaaaata atccgctcac ttttgaaatc
    11461 gataccgaca aacggttcat ctagaaggta gacgagacta tcagacatca gtgcgcgtgc
    11521 aataaagaca cgttgtaatt gtccgccact caatgcatga agttgtcgtt tccgtaattc
    11581 ataaagttcg agttctttta aaagtgtatc tcttttttct cgaatggctt taggaacacg
    11641 ccgaaaccag ccaatttctt gataacaacc tgtcaaaact aaatcttgta cattaattgg
    11701 aaagtccaaa tccagtacag atttttgtgg aatatacgtc atatttgtca attgttgttg
    11761 tgctggctgt tgattcagcg taacttttcc ttttgcaggt aattctccaa taattgattt
    11821 gatgagggat gattttccgc taccgtttgg tcccataata cctatcattt caccattaaa
    11881 aggtagatct aaagatatgt tttttaggac gtgtttttgg ccaagatgca aatttaagtt
    11941 ttctatagac agcataatta acaccacctt cacttgaaat taggataccc taataaaatt
    12001 atacgataaa ttgaaaattg tcaacatgaa ttcgtttcgt ggtacaataa agtgaatatt
    12061 tgagagaggt gaacatatgt taactgagga aaaagaagac tatcttaaag cgattttgag
    12121 tcatgatggt attgatacgt atgtttcgaa caaaacattg tctcgctttt taaatatcaa
    12181 gccaccgtct gtgagtgaaa tggtaggtcg cttggaaaag gaaggctatg tgatgactaa
    12241 gccgtataaa ggtgttaaat tgtccgagct tggattgtca tatacgttag atgtgattaa
    12301 acgccatcgc ctcattgaac tgtttctcat tgaagtgttg aattatactt gggaagaagt
    12361 acacgtagaa gcagaagtgt tagaacatcg agtgtcgaaa ctctttgttg aacgattaga
    12421 tgagcttcta aaatatccaa aaacgtgtcc tcatggtggt gtgataccgc gtgataatca
    12481 ttttgaagaa atatacaaaa taccgctcct ctcttttgaa gaaggcgatg tcgtgacgat
    12541 tcgtcgtgtg agagatcgtt cggaattgtt agtgttttta tcgagtaagg cgctgtcgat
    12601 tggtgatacg gtgaaagtga tagcgaaaga cgatattaat cgtttgatgg agcttgagaa
    12661 taagggcgag aagattgtgt tgagttatca gaatgcggaa gtgatttttg gtgaaaaggc
    12721 ttagttttat caattcttcg gttatatgat ggagatagtg aatctttgta tattgctaaa
    12781 ccaaccgacg cttttcctag ggctgattcc tcaggagtcg cggttggttt ttgcaatctg
    12841 aggtgtggtg aatctaatcg ttgaaaactt gtaaagtaga aattactgta tttgtttgca
    12901 ttttcaactc aatcacgctt cattttcttt tgtggaagag tggaagttga gtgattacga
    12961 caattagaat tgtgccgtac attctaggag tcttggctca actcagttcg gttgagttaa
    13021 gcaatatcga agtcaaaaaa taataactca cataaaaaaa cggttgtagg agagaagggg
    13081 aatttctcat ctgcaaccgt ttttgtgata tcgtgacgtc tatagttttt tgacagtgag
    13141 taataaatag ataaagaatg gcgcgccaaa tgctgcgatg aatacaccgg ctgggacttc
    13201 tttcggtaaa aagagtgtgc gactgattaa gtcagccacc ataagcgaaa tggcaccgat
    13261 acaagcggtc atgatgaatt gtttgattgt acttgttcga atcagtgttt tagcgatatg
    13321 gggtgcaatc aacccgataa agccaatgtt ccctacaaaa ctaatagcga tggatacgag
    13381 tagtgtcgcg acgataattt gtaacagtcg tgtttgttgt atatgtagac cgagtcctgt
    13441 tgcgacagat tcatttaaag cagcaatttt catgcgtggt atgatgaccc ataacagagg
    13501 tgtcatcaag agcagtgcgc cacataagat gagactgtct tgaaaagaag cgccgtataa
    13561 actcccaacg agccacgtat aagctttaga ggccgagagt tgtttggttg tgagtaatag
    13621 gccttgtgtg atgcccatga gtactgtttg taatgcgatg ccaataatga taagtgtcga
    13681 gggacgaatt tgatagttca tttgaaatga catcaagatg aacatcgcga ccgttcctcc
    13741 cgtgatggcg aaaaggggaa gaaggtgaat gcttaagtgg ctaaaccatg tgataaatag
    13801 tacagcactt aaactcgccc cccctgtgac cccaataata tcaggggaag cgataggatt
    13861 ttttaggaca ttttgtaata atagtccact cagaccgagc gctgtccctg caagaatcgc
    13921 aagtgtaatg cggggaaggc gtaaaacttc taacgtaaat tgataagcac tcgcgcttgg
    13981 attgataaaa tatgcgatga catctgaaaa acgaatgacg tctgatccaa ccatcatgct
    14041 taacaagcct acgatgacaa gactgatgag gccgatgcat agatagatgt tgtctttact
    14101 atagcgctca tttttcatac acggtaaatc cccttcttca taagatatat caatactaaa
    14161 gcgcccaaaa tgcctgtaat aatgcccacg ggtagctcta gcggtcgaat gatgactcgc
    14221 gcaacaatat ctgcactgat cattaagcaa gacccgagta atgctgtgta tggaatcaat
    14281 aactgatagc gagggggcag tatgagtttg gcaatatttg gaatgatgag gccgacaaat
    14341 ataatcgaac cggcaagtgc aacggaactc cctgcaagca cactaatcat caatacgatc
    14401 acccatttga tgcgctttac attttgacct aatcctgtcg caatctcatc gcttgtcatt
    14461 aaaatattga gatgtggtgc catgaaaaat ccggcaatga gaaacaaaag tatgatcact
    14521 atcatccacg gtatatccca aatatttcgc aacgatacag aaccactcaa ccaaaataat
    14581 aagccttgga gattcgtttc gttcataatt aaaatgcctt gggtaaaggc agtgaacagc
    14641 attgaaattg atgcgccggc aaggatgacg cgttgtggtg taaaacgcgc ttgtttaaac
    14701 atgcctaatc cgacgacaag tatcgtgacg agaatagcgc ctacaaaagc catcacgacg
    14761 agtgcttcaa atgagtgaac acgaatccat gtgacgcccg taacgataaa aaagacagcg
    14821 cctgcattga caccgaacag tccaggtgaa gcgaccgcat ttcgtgtgag cacttgcatg
    14881 aatagacctg caactgcaag ggcagcacct gtaagtaggg cgatgattgt tcgagaagca
    14941 cgtgaacctg tcacaagggt atggacatcg ttttggccgt caaagtggaa taacgcctgt
    15001 atcaactgag gcagtgatac aagcgtgttt ccaatcatta ggcttaaaaa cgatacaatg
    15061 acaagacatg cacttgcgat aaataagtga tgtatcggtt taagcgacat aatgtaactc
    15121 cttatgttat tgctttttaa tatcgagttt ttcgtataaa tcgtcaatca atttaagtga
    15181 agattggtaa ccgcctgcta agttccaagt gatttcatct acaccatcaa cgacatgtcc
    15241 ttttttcaca gcgtctaagt ttttccattc tgtgcttgat gtccattctt gttcagtttt
    15301 ttgtacaagg tcggcatctg ctgctttagg atctgatttg aaaatgaaga tttggtcagc
    15361 atccatcaac ggaatacttt cttttgaagt taattgaata atgtctttcc ctttatccac
    15421 ttctttttgt tgaccttcag gacgtttaaa gcctaaatct tgtaaaatat ctccagcgta
    15481 accaccagca taaatacgtg tttggtcagc acggaagttt acgacagaag ctgaaatagg
    15541 ccatgcatca ccatatttgg ctttagcatc tttttggaat gctttcactt tatcatcata
    15601 tttttgaagt aatgattgtg cttctttttc tttccctaaa gctttcccca tcatttcagt
    15661 tgtatcttta aatttataaa ctgtatctgt cgtaatcgtt ggggcgattt ttgacaattg
    15721 atcatatact ttttcgtttc tcactttaga agcaacaatg agatcaggtt ttaattttga
    15781 gatttcttct aagtttggcg caggttcttg accgacattt ttcgtgtctt tcaaatcatc
    15841 tcttaggtat tcaaattggg gtgcttgtgt ccaagattct actgcgccca ctggtttaac
    15901 acctaaagaa actgcgacat ccgttgcgcc ttgatataaa gtcacaacac gtttaggttc
    15961 gcctttaatt tcagtcgttc ccattgcgtg tttaattgtt gttgtatctg ctttcttgtc
    16021 tgacgcttct ttgtgacttg aattgccaca cgcagataag acgagtaata agactaaagg
    16081 taaaacgagt agctgtaaaa gtttattcat gagatgaact ttcctcctat gtatcatcgg
    16141 tattttcaaa aataatgaga atcattatca attaaagtat gtcgaatttc aactcataag
    16201 tcaataataa ttttatcttt tcaacaaaaa ttataaatgt ttgacttata aattgaatat
    16261 caatataatg ccaccataac cgataatgat aatcattctc agttataaaa ctttcatctc
    16321 aattcgatac aaggaggtcg tcgtttttga ttaaaaatga agcaacatat gattcgttat
    16381 tatcttgtat tggccagacg cctatcgtac aactgcaacg attatttcct gaacatcgtg
    16441 ttttagcgaa attggaatat atgaacccgg gtggcagtat gaaggatcgt ccagccaaat
    16501 ttattataga gcgtgggtta gcaactggag aaattaatgc gtcgacgcat ttaatagaaa
    16561 gtacatcagg caatctcggc attgcattag cgatgattgc aaagattaaa ggattaaagc
    16621 taacatgtgt ggtcgatcct aaaatttcac cgacgaactt gaaaatgatt gaaagttacg
    16681 gtgccaatat cgaaatggtg gaagaacccg atgaacatgg tggctatttg atgacacgta
    16741 ttcatcgcgt caaaacattg ttagcggaaa cagaaaacgc gtattggatt aatcaatatg
    16801 cgaatgattt aaattggcaa gcgcattacc acggtgctgg tacggaaatt gtcgaagcgg
    16861 tggaagaacc gattgactat ttcgttgctc ccgtgagtac gacaggtagc attatgggga
    16921 tgagtcgcaa aattaaagag catcatccga atgcgcaaat tgtagctgtg gatgcgaaag
    16981 ggtcgattat ttttggtgat acgccatgta atcgtgaact acctgggatt ggtgccagtc
    17041 gcgtgccaga gattttgaat gcggctgaaa ttgatgacgt gatacatatt gacgattatc
    17101 gatctgcatt agggtgtcat caattagtgg atcaagaagg catttttgca gggggttcga
    17161 ctggtgcgat tattagtgcc atccaacaac ttacgcaaaa ggttgagcct ggcgctacca
    17221 ttgtgacgat tttgccggat agaggcgatc gctatttaga tttagtgtat tcagaaaagt
    17281 ggttcgaaca attaaaaaat aaacaagaaa gtgagactta ttaatatgaa acatccatta
    17341 ttgtatttaa atcgtacgga cattgaacaa gcaggagggg cacagtcaca aatttacgtc
    17401 gatgcattaa cagaagcatt aacggcacat gcaaatcaag attttgtcca accgttgaaa
    17461 ccttatttac gtcaagatgc tgaaaatggt catatcgccg accgtattat tgcgatgcca
    17521 agtcatatcg gtggtgatca ttcagtatct ggaatcaaat ggattgggag taaacacgac
    17581 aacccctcaa agcgacagat cgaacgtgct agtgcggtga ttattttaaa tgatccagaa
    17641 acgaactacc cgattgcggt catggaagca agcttaatca gtagtatgcg tacagcagct
    17701 gtttcagcga ttgcggcacg tcacttagca cggccaggtt ttgaaaacct aacgattatc
    17761 ggttgcggct tgattggtga caaacagctc caaacaatgc ttgaacagtt tgatcatatt
    17821 caaaaggtgt atttatatga tcaatttgaa gtagcatcac aaaaaatgat tgaaaaatgg
    17881 tcagcgcaac gaccagatat gacatgggtt caagcgcaat ctgcacgtga agctgttgaa
    17941 aatggggatg ttgtcattcc gtgtacagta acggatcaac cgtatatcga atacgactgg
    18001 ttacgtcaag gcgctttcgt cagcaacatt tcgattatgg atgtgcataa agaagtgttc
    18061 attaaagcag ataaagttgt cgtagatgat tggtcacaaa gtaatcgcga aaagaaaacg
    18121 atacatcaac tcgttcaaga cggtctattc agtcgagaac agttacacgc tgaactcgga
    18181 caacttgtga caggtgagaa agtcggacgt gaacatgacg atgagattat tttattaaac
    18241 ccaatgggca tggcgattga agacattgcg agtgcgtact tcatttatca acgtgcgcaa
    18301 gctgaaaata taggcacaac attaagtctt tattaggagt ggcatatatg gtaagtgaac
    18361 acgaacacaa tgtaacgcgt gcacaacaat acatattaaa agaccttgtg gatgcgttat
    18421 tatttgaaga tttaggtggc attgcatcga cgagtgaacg attaacgata caacaacaga
    18481 cgtatttacg ttatgagaaa aaggggattg tgttgctcat tccagtttat tacagtggac
    18541 tgaatgtgta tcgctctaat ggagaggcag tgttccatat tgaaagtaaa acgtgtatgc
    18601 ctttgacagt gcatgaattg tgggaattat ttgtcacaat gaatgcagat ttagcggctg
    18661 agtgggcaca tgcgcgcttt gcagagggac tggaggcagc tgtgaccgag ttaacggcac
    18721 aatatgacgg atttaaagcg agtgaacatc cattcatctt gtcagaacag tttgccagtt
    18781 tgaaagacag gccttttcat ccggtcgcaa aagaaaaaag aggattgaca gcagaagatt
    18841 atgctgtgta tcaagcggaa tatcatcaac cattagccgt acaaactgtg gcaatccgaa
    18901 agtcacatgt catacaaggt aaaggtgcga cagatgagca gtacgcacag ttttggggtg
    18961 acacattggt tcggtgtcaa caagcactca ttgagaaagg gtatgacact gaggactatg
    19021 tcatttttcc ggtacaccct tggcaatacg aacatgtctt gccggttcaa tttagcgcag
    19081 agatcaaaca aggtatcgtc gtcttgcttg atgtgacgat gggacaatac ctctcgtctt
    19141 catctatgcg cacattgata ccattagccg cgccgttcac gcatttaaaa gtaccgtttt
    19201 caatgcaatc acttggtgcg ttaagactga cgccaacacg ttacatgaaa aatggtgaag
    19261 caggagaaac gttattgcgt gatattatcg ctcaagatac gtcattgaac ggtcgtgtga
    19321 agttgtgtga tgaaacggtg tggtggtcgt acatgaatga agcacaagat atttttcaag
    19381 atcaatcggg acacctcact atgcagttac gtcactatcc tgagtcaata aaagatgcac
    19441 agatggtcac ttcgatggcg tcacttgctg cacatgagtc gacactctat gaacgcattt
    19501 tagagacgga ccatccaacg actgaacaaa tcaatgcatt gtttgaacaa gtgagcgatg
    19561 catttttaaa gatgacactc gcattgatga aatatggtgt gttgcctgaa ttgcacggtc
    19621 aaaatgtgtt agttgtcttt cgagaagggc atgtggcgga atttgtattg cgagatcatg
    19681 atacggtccg cattttccca gagtggttaa cagcacaagg ctttaaactg ccgaactatg
    19741 cggtgagaaa agatacaccg aacacactat taaatgaaga tatcgaaaca ttttttgctt
    19801 attttcaaac gttagcagtg agtgttaatt tatatgcgat tgtcgatgct ttagttgatg
    19861 tgtttaaagt atctgaaatg gaattgatga cacagttgag acaaacgatg caacatcaca
    19921 tcgatacaat agattggtta cctgggacat ctgaagaagt ggaacgcatt atctttacac
    19981 aagaaacatg gccattcaaa cgcattttac tgccattgtt gcatcaacgt ggtgacggtg
    20041 gtggaagtat gccatcgagt atcggtcgtg tccccaatcc aatgaaaagg acagataatc
    20101 atagaacaaa cgtggcgacg taatttcaga acgctatggc tcggtcagtt tatggccata
    20161 gcgggtttga ccgtgttagt tccattactt ccaatctata tagcgtcgtt gaaacagtta
    20221 aacatttttg aaattcagtt gtggagtggg attgctattg cggcgcctgc aatcacaacg
    20281 atgttagctt ctccgttatg gggaaagctc ggtgaccgac tgagccgaaa atggatggtg
    20341 ttgcgtgcat tgtttggctt agggctatgt ctcttattaa tggctttttg tacgacaccg
    20401 tttcaatttg tactcgtacg cttgttgcaa ggtttattcg gcggcgtggt cgaagcttcg
    20461 agtgcatttg cgagtggtga agccccggaa tctgagcgtg gcgcggtact cggtaaatta
    20521 caaagtgctg tgagtgccgg ctctctcgta ggtccactga ttggcggcgt gctcgcgaca
    20581 gtgctcggtt ttcaagcact cttattctcg attggtctta tcactttgtt gatgagtatt
    20641 ctgggcgtct ttttcttaat tgaaacgaca catacgcacg cgaatacaga acggccacaa
    20701 gtaaaaaaaa gtgtacgaca atcgatgaaa tgtttgttgt gtacgcaact gacttgtcgc
    20761 tttataatcg tcggggtatt agcgaacttt gcgatgtatg gcatgatgac tgctttggcc
    20821 ccattagtga gtagcgtcaa ccatgttcac attgatgatc gtgcggcagt cggaatttta
    20881 cagtcagcgt tttggacagc ttcgatgatg agtgcccctt tttggggtta cttcaatgat
    20941 aaagcttatg tcaaaaacgt atatattatt gcgagtattt tatgtggcat cagtgtgctt
    21001 tggcaaggtg tggcgacaga cctgtggatg ctaggtatcg cacgtgtgtt acaaggttta
    21061 acttatagtg cgctcattca aagtgtcatg tttgtcgttg taaatgcgag tcaccaccaa
    21121 ctgaaaggga cgtttgtagg ctcgacgaat agcttcttag tagttggtca aatcgtcggt
    21181 agcttgagtg gcgcaatagt aacaagttat accgcaccgg cgacgacatt tatcctgatg
    21241 ggcgttattt tcgcattgag tagcacacta ttatggacgt cacacattaa aaatcaaaaa
    21301 atcaacccta tattgacggg tttttgggag gttaaagagc aacgtgcaaa actttaagat
    21361 gaacaaacgc gcggaacatg ctgcgttaga acgactgctc aatatttatt ttagagaaaa
    21421 aggttgtagc cctaaaaaag aagggacgtc tcaatggcac atcactttaa aagatgattt
    21481 gacgctacgt ggaaagttgc gctatgtctc atcaatgggg catcacatgt atgattcagc
    21541 cgtttactta gagagtatcg gccatgtgtc gcaactgaca ccacttgagg caatcagata
    21601 tatacttgaa gcgattgcgt acgatgaaac ttctcagact gagactacga tagtagaagc
    21661 ggtttatcaa gatatatgta acagtatttc acgaacaaca cgttatcttg atcaagcgag
    21721 acggcatgca ccacctcatc agaatcatta tatcgcatca gaacaatcac tttatctggg
    21781 ccatcctttt cacccgacgc cgaaaagtgc tacaggcttt actgatgaag atattgagca
    21841 atatgcgcct gaatgtcatg ttgcgttcca actgcactac ttagcggtgg atccagctct
    21901 attagtcgaa cgttatgtac caaattatga agcgcgtgtt gatgaaactg tgcgtcaact
    21961 tgcacaaatt gaagaagatg aatataccgt aacctatcgt ttactgccag tgcatcctta
    22021 tcaaattgaa gtgctcaaac aacaaccgac gattcagcaa catctcgcaa atggtacgat
    22081 tcaagactta ggacaacgtg gccatgtcgt ttatccgacg tcatctgtgc gaacagtatt
    22141 cgtaaaagcg ttgaatattt atttgaagtt gccgattcaa gttaaaatta cgaattttgt
    22201 gagaacaaat gacttcgaac aaattgagag aacattggat gcggcagaaa ttatagcagc
    22261 gattaaacca gaatatgaaa cggcgacatt taaattgatg tttgaacaag gctaccgcgc
    22321 gctacaacca gataatgatg cggtgataga tattttagcc aatagtgcga tgattgtgcg
    22381 tgaaggcatt gaacagtacg actcattaga agaaattcac gtcttagcaa gcttatttga
    22441 aacgatgcca gatgagccga cgtcaaaatt aggccaagct tggttgcgca gtggattatc
    22501 tcgtgaagat tggctgacag tgtatttaaa tcaagtcatt tggccaatgt tggaattatt
    22561 tgcacataca gggattagtc tcgaagcaca cgtccaaaac acactcgttg cgctagaaga
    22621 agggcgtccg acagtttgtt atgtgcgcga tttagaaggg atttgtgttt ctgaacgtat
    22681 cgccacagca caagggatga ttccgcacca aattagcgca gacagtccgg tcgtgtatac
    22741 gcatcatgaa gcgtggcacc gttttaaata ttatgtcatt gtcaatcatt tgggccatct
    22801 cgtttcaacg ttgggtaaag caacaggtga tgaagagatg ttatggcaaa ccgtgaatcg
    22861 cacattggaa acgtggcaag aacgtgcaga aggtcatgat gtgttaatgc aatgtttgga
    22921 agatttacgt tataatccga catttgctgc gaaggcgaat ttgatgagta aattacaaga
    22981 acgcggtgaa gacccgattt atattaaaat tcctaacccg attagtcagg aggaggacag
    23041 tatttatgaa acaactgatt gaacaagtga ggcaacgtat catgcaacag ttggtcacgt
    23101 cacttatata tgaagacgtg gtgcattatg aacagctacc gagcgaagat gacgagtgtg
    23161 atacgtacac tattgagggg gaagccgtga cgtatcgcgt gcaactgcaa cagtccgata
    23221 gttttgaacg actcaggatc agcgctccag tttggcgtat tgcagatgga gaggaagcgg
    23281 tcactcttga ttatgcgcaa ctgctacgag aggtgcgttt tacatttgat aaagatgaac
    23341 aaaaattaga agactttatc attgaattat tacaaaccga acttaaagac acgcaagcgc
    23401 aacgttatcg tgcacagcaa tcacagatgt cattaacggc atttgatgat tatgaatcgt
    23461 atgctatgga aggccatatg tatcacccaa gttataaatc acggctcggc tttacactgg
    23521 atgacaatgt acgctatggt ccggatttcc gcccctcatt tcaactgcag tggattgcga
    23581 ttgcaccgga tcatgtggaa acgacggtat ccgcgagtgt cgatacagtt gcattgcttc
    23641 aacgtcagct cggtacagag acgttagcaa cgtttgaaaa gaccctccag caacatgggc
    23701 atacccttga aacaatggtg ctcatcccgg tacacccgtg gcagtttgaa catgtcattc
    23761 aagtcgaatt tgcggaagcg tggatgcatg gagagatgct atggctcggg acaagtgacg
    23821 aaatgtatgt gccgcaacag tctattcgaa cactcacacc gactgatcgt aacaaatatt
    23881 atttgaaaac accgatcagt ataacgaata catcaacaaa acgtgtgtta gccccacaca
    23941 cgattgaaaa tgcagcacaa attacggatt ggttaaaaca tattcagtca aaagatacct
    24001 atttacaaca acatttacag acggtatttc taggtgaagt gttaggccat gcgtatcaca
    24061 atccgacctt atccgaggtg aagcaacaac gtatttacgg tgcactcggt gtcatttggc
    24121 gtgaaaatat tcatcattat ttagcattgc atgagtcagc tattccattt aatgctttat
    24181 attcagtaga tgctgataac cgcccactca ttgatgcgtg gatgtcaaaa tacggtgtag
    24241 aacagtggat ggcacaattt ttcagtgtcg cagtgacgcc attgattcat atgctgtatc
    24301 atcacggcat tgcgtttgag tcgcatgcac aaaatatgat gttaattcat gaaaatggct
    24361 ggccaacacg tatagcattg aaagatttcc atgacggggt tcgctttaag ccgagtttgt
    24421 taagtgaggt tgcacaaaat ccacgattac gtgacacacc tgaagcgcat cgcaaagtga
    24481 accgaaactc atttatcgaa acagaagatg tcaatcttgt ccgtgatttt ttacatgacg
    24541 cctttttctt tattaatatt gcagaaatca ttgactttgt tgcacgtcaa tataagttaa
    24601 aagcgtcaga acagtggaca atggtacgta cggtcattga acagtatcaa cagcaattcc
    24661 caaaccttga aaattatcgc cacttcgatt tatttgtacc gaccattcaa gtggaaaaac
    24721 tgacgacacg ccgtttacgc gaagatgtag cattacgtct tcacgaagta cgcaatccgt
    24781 tgaggaggtc tgaagtatga aatctttgtc actgaaacgt aacttagcag aaggaaaggt
    24841 acaatacgga ttgatgaatt cgattccgga tccactcgtc atcgaaatca ttgctgcaag
    24901 tggttatgat tttgtcgtta ttgatacgga acatgtcgca attaacgatg aaacattagc
    24961 gcatatgatt cgtgctgctg agacagccaa tattattccc attgttcgcg ttacagctgc
    25021 aattgaacgc gacattatta aagtgttgga catgggcgcc aaagggattg tggtcccaca
    25081 tgtgaatgac cgcgaaacag cagaacgcat tgtgaagcta agtcgttatt atccagaagg
    25141 catgcgcagt ttgaatggcg gacgcgttgc acgatttggc gaaattcctt taaaagaagc
    25201 gatggctgaa gcgaatgcat cgatatgtgt catcgcaatg atagaaaata tgcaaggcgt
    25261 ccgcgcgatt gatgaaatag tgcaagtaga aggtttggat atggtcattg aaggtgcggc
    25321 tgacttatcc caatcactcg gcatcccttg ggaaacaagc catgatcaac ttcaacgagc
    25381 gattcagcat gtctacacaa ctacgacaac tgcaggcaaa cagttttgcg ctttgccgag
    25441 agatgaccaa caagtgcaac gatggcaaca gcaaggcgtg caatgtttcc tcatgggcga
    25501 tgaccgcggg aaactgtacc gtcatttaaa acacaattta gcacaggtga aagaggtgac
    25561 agctcatgac ggcgattcat acattagtta aacagctcaa acaacaaggc ccgctctgcc
    25621 attttattta tgatatggac gggctacgac aacatctcga aactgtgaca tcacagctcc
    25681 ctgacaattg tgaaatgtat tatgcaatga aggcgaacag tgaatctgag atattagccg
    25741 caattcagcc ccatgtcgcc ggcttcgaag tggcgtcaga aggtgaaatt gcaaaagcat
    25801 tggtacatac gacagcagaa catgtcattt ttggtggacc gggaaaaact gacgaatctt
    25861 tacgatacgc gattcaacaa gggattcgac gcattcatgt tgaaagttta tatgaattag
    25921 agcgattaaa tgcattgctt aaacaagaaa atgcgaccat gtcaattttg ctgagagtga
    25981 atttagccgg accttttcca gctgcgacgt tacatatggc aggtcaaccg acacaatttg
    26041 gtattgatga aacagaagtc gacacggtta ttgcaacagc gcaaaatatg ccacgtatcc
    26101 aattagaagg ctttcacttt cattcgattt ctaacaactt agacgccgcc ttgcatttac
    26161 aagtgatgac gttatatttc caaaaggcaa aagcatgggc agcacaacat gactttacat
    26221 tgcaacacct gaatgtaggt ggtggtatcg gtgtgaatta cgctgactta aatgaacaat
    26281 ttgattggac gtatttcacg acagaactgt ccgctttgat tgaagaagaa ggtctacaaa
    26341 atataaccat caactttgaa tgtggtcgct atatggtggc acatatcggc tattacgtaa
    26401 ccgaagtatt ggatattaag cgtgtgcatg gcgcgtggtt tgctatttta aaagggggca
    26461 cacaacattt caggctgcct gtctcatggc aacataatca cccatttgaa atattgccgc
    26521 taggtgaaca ggcaaatcaa attgcaccaa gaacgattga acaacaggca gtgacgttcg
    26581 tcggtcaatt gtgtacgcct aaagatgtgt ttgctaaagc ggtggagata ccagcgctgt
    26641 ctacaggtga tgcagttatt ttcatatatg ccggtgcgta tggttggtcg atttcacatc
    26701 acgacttttt aagccatccg catccacaat gcatttactg gtcaagtgag aaggagggag
    26761 aatcatgaaa cagatttacg acacattgca actcattcct gtcgacaaga ttgacctcca
    26821 cgaagcattt gaaccgagtc gattagaaaa aacgaaagag agcattgcta aagaacagca
    26881 tttacgtcat ccagtgctcg tcgttaaaac attatttggt cgctatatgg tcattgatgg
    26941 tgtacaccga tttatgagtt tgaaagcact cggctgtgaa gttattccag tacaagtgat
    27001 tcagcgcaca cagtactcca ttggcagttg gcatcataaa attcctaatg gtgcatggtg
    27061 cgaagggtta acggatgagg aactattacc gtggacgaca gaagttcgcg atgaaacacc
    27121 ttttattacg atgtgtgatc aacagaccga acattattta tatgcagcag atttaacagc
    27181 agataaacta gatatttgga aaaaggttgt gaacagttac agtgcgagct gcaacgttga
    27241 acgtgttccg catagcgcct gtttgtgtct cgacagcaat gatatattaa tgaagtatca
    27301 gccccttcaa attggtgaaa ttgaagcagt tgtgcaaaga ggtcaaactg taccagcggg
    27361 tgtcacacgt tttaacattg cagggcgctg tttgaattta caagttccgc tccatttatt
    27421 gaaaaatagc aatttaggta atcaggaaca gtggcataca tttttacaga agaaaattga
    27481 aagcatgcgt tgctatactg aaaagatata tttaatagaa gcggagtaaa gcgcatcatc
    27541 atttatattc attatgaagt aaaaaagctg gggaacaatg acgttttccc agtttttctt
    27601 gtcacccttt gttgagaaag ggttcattga aatctcgccc tttgagatac aatggctcaa
    27661 ataggcgaga cgcttgaggg atgatgttaa aggtcaaagg aatgtcactt aactttaaaa
    27721 gtggttactg tttatcgcac tagctgtctt acgttgtgac atagaaaagt ttcagtcttt
    27781 atccattcat agatttaaga atcatcaata actagaggag gacatattga atgaaataat
    27841 aaatggctaa aaaatttgtg acaatccata agcttgaaaa gaaaacagta ggcagtttcg
    27901 tcaacatttt taacgctgtc ccatcccatt caggctgagg gcgtgcgaat gtaagttgta
    27961 caatcgtaat cgtcgactga ataatttcac ctaacagtgt cccaagtatg aaatgataaa
    28021 cgagcatata aatgaatgaa tagttcgtta aattttcaga ctgaatacct aaatagccaa
    28081 tgagtattaa aaaggcaatg atgagtaacg gaacagcctt tcttgacgtt ttccatgtaa
    28141 agtaaatgaa aacaagagta taaagcataa taaacaatgc gccttgtccc ttactttgga
    28201 tatacaaacc taaaatcaac atgataggcg acatgagata gccacctaat gtcgtgatga
    28261 tatggcctga acgacttcta ctagcggtga cagcgtagcc ttgttggcct gttgcgttac
    28321 gttcacgtct tgttgtaaca acgacaaaat ctcgtacacg tccgcctgat aaacgattaa
    28381 agagcacatg gccaaattca tgcgtcaaga ctggaatata attcagcgca atgtctaata
    28441 atgaaaaaat aggacggtat gcataatggc ggcttacgag gtagaggcct gcgatacata
    28501 aaagtaaaat aaatgaaata gggataggtg aagtaatcca cgaatatccg tgcatagatg
    28561 tcaatccttt cacaaaactt actttctatt ataacgggtc tattgcgtct gaactataga
    28621 cttaagtcct aaagtgtatc attcagttga cgtattactt ttgtaggatt atccgcgaca
    28681 tccgtagatg caggcacagc acgtgtcacg atacgtctag cagcaacggt agccccttga
    28741 tgtactgtaa caccggggag ggcgggcaca tctgcatcga tccatacatc atcttcaata
    28801 gtcatttttg gtccttgttc aatccctgaa cgacgttttg ttggatcaag tggatgattg
    28861 acagtaatca gttgcacatt tggcctgatt tttgacgtta ttgttgataa aaataggcca
    28921 atatcaaacc atgtgttgtg cttattcaca taaacgttgt cacctaaatg aatattgtaa
    28981 tcatcgtcga agtagaacgg tggctcgatg taacaatgat tttgtacgtg acctatcatg
    29041 tgtgtcaaat actgttcgcg ttgtgcgatg tcggtccttg cattgtaggt attgcgagct
    29101 aatgcggctt gttaacggtc atctacgagc gttgcatcgc ttggataata aggtaattca
    29161 ttgattattt tttgttatca gtcataggag cactcccttc ccgtaatgtc gttttaaatg
    29221 atacgcaacg catcaaaaaa gcggacatct aaaacattaa aaataatgta tcatcatttc
    29281 ggactttgga atgaactttc aataaaaagt aggatttagc ttgattttgg tgtaaaatgt
    29341 gttaaagtga catcaatata ttgtaaatac catgtaaaac aaattgaatt gaaattaaat
    29401 gaaagattga aggtgagact atggctaaag cattgcctac tggtcatcat gagggcactt
    29461 ttcctagtcg tgacactaca gtagagggaa catatacgtt taatgagaaa aaagcgcaag
    29521 tccaagtgat gaatgtgatg tttgataatg ttacattgat ggacatgcat caaaatattt
    29581 taaaatatat gcatactgaa acgaaacata atttatttat tgtgacggct aacccagaaa
    29641 tcgtccatta tgcatcagaa aacccattat atgctcaaat gttgaaacaa gcagacttta
    29701 tcgttccgga tgggacaggc attgttaaag ctgctcggat attaggtcaa tctttacaag
    29761 aacgtgtacc gggtattgaa gtaatggaaa catgtttaaa tattgcagat ttagagcgta
    29821 aaaaagtgtt tttacttggc gcaacatctc cagttgttga aaaagctgca cgacgcattc
    29881 aacgtcagta cccacatatc gatatccaaa cgcatcacgg atttatcgat attactgatc
    29941 aaaacgtcat cgaacaagta cgtgatttta atccagactt tatttttgta ggtatgggct
    30001 atccgaagca agaacaatgg attcaacata accgccatca tttcgaccat acattgatga
    30061 tgggtgtggg cggctcaatc gatgtttata gtggtgaagt gaaacgcgca ccttacgtat
    30121 ggagagcgat gaatctagaa tgggcttacc gagcgttgac agatataaag cgaattcacc
    30181 gtttgaaaag aattcctaag tttgtcgttg gtgtgtataa acaaaaatat ttaggtaaat
    30241 agtgtagata atcaaagcgc gcgtcagacc atttcgattg tgattagaag tgggatgaag
    30301 cgcacttttt ttattaagtt cacaataaat acaaaaaatg aggcatagtc tcagttgaaa
    30361 tggggtaaaa attcactgca tcgaccacac aacccataga ttcaacgtta ttgatgcagt
    30421 gtgtgggctg caattattac acgtatacgg aaaagttatt tgatgacaaa gcgattttca
    30481 tctaaagctt gacgaaacgc cttttgttct gcagtcgatt ttttcttgaa atctttcaaa
    30541 aaggcttcat atttaggaag gacatcttcc acagagccga aatctttaag ttgtccggct
    30601 tcgatccaag caatttttgt acaaaattct ttcacttggc gtaagttgtg gctgacaaag
    30661 aagattgttt tttcatcttc tttaaattca taaatctttt tcaaactctt ttgggtaaac
    30721 gtttggtcac ctacagacaa cgcttcgtca atgacaagaa tttctggatt gattgtcgca
    30781 ctgatggaaa agccgagttt cgaacgcatc ccgcttgaat atttttttac gggctgataa
    30841 ataaactcac ctaattcgct aaattcgaca atttcgggtg tgagtgcttt aatttcattt
    30901 tttttgaaac ccatgcacaa cattttgaac tcaatatttt ccatacctgt taagttgcca
    30961 ttgagtccag cgttaattgc gatgacactt acatcgccag ttttatcaat atgcccgtgt
    31021 gtcggtgtga gcgaaccacc aatcatattg ctcaatgtcg atttaccgga gccattaatc
    31081 ccgactaaac cgataacatc acccgcgtag gcttggaatg tgacatcttt gagtgcataa
    31141 aatgttttgt ttttatgttt tggccatata gcatctttaa tacgttcttt attattacga
    31201 taaatacgat attctttagt cacttcgtta atactgacag ttggattcat ctgtgaacag
    31261 tccttacatt gataatattg aaatgaaatt tggtttttgc t
//
LOCUS       DANHOL010000009        30484 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.009, whole genome shotgun sequence.
ACCESSION   DANHOL010000009 DANHOL010000000
VERSION     DANHOL010000009.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 30484)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 30484)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..30484
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.009"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            <1..150
                     /locus_tag="PTC08_000273"
     CDS             <1..150
                     /locus_tag="PTC08_000273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division regulator GpsB"
                     /protein_id="HDK5681808.1"
                     /translation="KKEIEDLRIRVASSRPQDNKSFANQSSNQNNNVDILKRISNLEK
                     AVFGK"
     gene            192..578
                     /gene="rnpB"
                     /locus_tag="PTC08_000274"
     ncRNA           192..578
                     /ncRNA_class="RNase_P_RNA"
                     /gene="rnpB"
                     /locus_tag="PTC08_000274"
                     /product="RNase P RNA component class B"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00011"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00011"
     gene            859..1986
                     /locus_tag="PTC08_000275"
     CDS             859..1986
                     /locus_tag="PTC08_000275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002446454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent RNA methyltransferase"
                     /protein_id="HDK5681809.1"
                     /translation="MYQLLAVCPMGLESIVAREVQDLGYDTRVENGRIYFEGDTSAIV
                     KANLWLRTADRVKLIVGQFEAVTFDSLFEQTKNLPWEQFIPTDGQFPVQGRSLKSKLF
                     SVPDVQAITKKAIVERLKNAHQVSGWLDESGAKYPVEVAILKDKVLLTIDTSGSGLNK
                     RGYRLAQGEAPIKETLAASLVKLANWTGDTPLIDPFCGSGTIAIEACLIAQNIAPGFN
                     RSFISEQWDIIPKGLYDQKRAEADELADYDKEIEIYASDIDPEMVEIAQRNADEVGVG
                     DIIRFEVKDVNTLTINHDGPIGLIGNPPYGERIGDRAEVEEMYRNLGILMQNHPNLSL
                     YIMTSNKEFEYLANRKATKRRKLFNGYIETTYYQYWANKKS"
     gene            2020..2937
                     /gene="rarD"
                     /locus_tag="PTC08_000276"
     CDS             2020..2937
                     /gene="rarD"
                     /locus_tag="PTC08_000276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter RarD"
                     /protein_id="HDK5681810.1"
                     /translation="MYQDKEFKKGILFALLAYVIWGTLPLYWALIHDVDPIETLMYRI
                     VLSLIFMLLLLPIIGQWQRFAQDMAQLKAKPFKLLIIILAGYIVTVNWGTFIYAIDAG
                     FVLQTSLGYYINPLVSILLSMIFFKERFNRLEWVAILFAVLGVVYMTFKVGEFPYISL
                     ILAFSFGIYGLLKKLVPMPALSSITIESLATAPMAIIYLIIVGQTADLSIGWNISTFW
                     LLFSGAVTALPLLSFSEGAIRIPLSLMGFIQYVGPTLIFILGIFVFKEPFNVDQFITF
                     CFIWVGIVIYVISQILKIKKRPQPFQYQN"
     gene            3101..6556
                     /locus_tag="PTC08_000277"
     CDS             3101..6556
                     /locus_tag="PTC08_000277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dynamin family protein"
                     /protein_id="HDK5681811.1"
                     /translation="MQNQEQLDILYKLKKEVEKSDHSAFIHTINQMIKKVYLNHYTMT
                     FVGHFSAGKSTIINRLIGQDILPSSPVPTTSNTALVTIAEAPGITANIEGQKYTQLNS
                     YDDVKQMNRENFHVESIDIRIQSDAFHKGFTFQDTPGVDSNVQSHNMQTEQFLYTSNI
                     VFYTVDYNHVQSALNFQFMKRLNRAGIPVVFVINQIDKHDENELTFQTFQNRVEQSVS
                     EWDIDLLETFYITKFEHPQNQFDALRAFIMEQDQHREAVKDYVARMKQFIHQHQLNYL
                     QHEMDEILERLNIEATQFDQAYQSHQQNEMISEEAQLLNDAVALKHYLKDKRRSIIDN
                     AYIMTHDMRETIRYCLESMTKDFKAAGLFNKKKKTEEERQTRLNELMIALQSKVDHQI
                     IKPMQEDLSFLTRFINDTDLNQRILNQKLTLPTSIITDLYQTQIQITNQYVLTFSNDV
                     MKAIKHYILKELEPLDDTIIDNVHAEEHLVDESNDSSAYTRYIELRNLSQSLKTENYR
                     HYYIHMEDSLDRLIDRTEIQYQVKSNEDNKKDVQQQEDVVTAEKNPINDAQMTQALDI
                     VKNIPLFKSSVKNIEETQERMQHQTVKIGVFGTFSAGKSSLINALLGDNYLTSSPNPT
                     TAATTEIGYGDTYHVTFKTPDMLLQQINDVFELEGQQFDSIEAFLEANIEKLKGRIDK
                     SRLAFIHAIEKNYALYQSYIAEGLKHEIQATDVQKWSAEDEYATFVQTVHLRLPLDWL
                     KDKVIVDSLGLHSNNQRHTNETEKILTTSDLILYVSYFNHAFTDNDKAFIEHMKNINQ
                     LKEQQAFKMVINATDLAENEVDKRAVRDYVADALMQVQMQPEIFSVSSRAALTKGDAG
                     VQQLKASISRFSEVESKHILEAKMYDQLRSIGQSYTQMIEDHTANAEKMQHVKQQLQK
                     MRQTTIFNSESLTAIRQKLINEIEDQMYHLNERLKIQLLDNVKAIYNTQMTNTTSFNE
                     EKRQSTKAYLNQIHQKLYLEQTLMIERIKFFFNLAFQQEMATKIRSFQQYHILLPDIE
                     TIEVAPVDQSFLTISFDDMVNALPKQLTKKNIMQPQVQKQIQADIKDETVTLLQPRLA
                     DLRQALESMLDTLTTQAQQALEQIESQAQREIDTVLAVEVDDALIAQLQVETPKLLTI
                     LNSKD"
     gene            6561..7442
                     /locus_tag="PTC08_000278"
     CDS             6561..7442
                     /locus_tag="PTC08_000278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-3' exonuclease"
                     /protein_id="HDK5681812.1"
                     /translation="MAHKLLLIDGMALLFRHFYATSVHKNFMRNTNGTPTNGTQGFVR
                     HVYSAIRDVEPTHVAICWDMGKATFRNDMFDGYKQNRPAPPEELIPQFDHVQHISESL
                     GFLNIGVENYEADDVIGTLTHAYAQSPDHEVYIITGDRDLLQCVRDNVYVWLIKKGFT
                     EYSKYDRARFELEYQLQPPQLIEVKAFMGDTADGYPGVKGIGEKTAIKLVQQYGSVEE
                     VIANVSQLTPGQQKKIAQNMENLRLSKQLATIELNVPLSIDTLFEQMAHHVELNHVLA
                     VLDEHELFVSKRFVQNL"
     gene            complement(7572..7970)
                     /locus_tag="PTC08_000279"
     CDS             complement(7572..7970)
                     /locus_tag="PTC08_000279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HI family protein"
                     /protein_id="HDK5681813.1"
                     /translation="MAKIYFDAATKGNPGLSACGVVIVTENERYTFTKVLDALDNHSA
                     EWEALLFALEQAQTLAVLNALVFTDSQLIEDAVNREFVKNGRFKPYLERYLQMTHDFE
                     LAFVKWIPRAQNKAANQLAQDALYQALGRS"
     gene            complement(8026..8724)
                     /locus_tag="PTC08_000280"
     CDS             complement(8026..8724)
                     /locus_tag="PTC08_000280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="queuosine precursor transporter"
                     /protein_id="HDK5681814.1"
                     /translation="MYNEWLGLGSFIVTFVLMVVMFRLFGKSGLYAWVAIGTIIANIQ
                     VLKTVDIFTISATLGNVMFASIYLATDILNDIYGRKVAKKAVWLGFSSTFIMIIVMQV
                     SLAFQPSEVDMAQDAMKAIFDVVPRIAFASITAYIIGQHIDVLVFNMIKKVFRSDRTF
                     FIRAYGSTTLSSIVDTALFVMIAFYGSLPNGVVLEIFITTYLLKLLTTVLNVPFGYWA
                     KSLYRRNKIKDDTL"
     gene            8950..9135
                     /locus_tag="PTC08_000281"
     CDS             8950..9135
                     /locus_tag="PTC08_000281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-finger domain-containing protein"
                     /protein_id="HDK5681815.1"
                     /translation="MLTDSEKKAIASIDHLSQQYCEHCLVKAHLRKTKGKTQAHHFCI
                     NACSIGKQIQQLGNALQ"
     gene            9167..10285
                     /locus_tag="PTC08_000282"
     CDS             9167..10285
                     /locus_tag="PTC08_000282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011303095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conserved virulence factor C family protein"
                     /protein_id="HDK5681816.1"
                     /translation="MEIIKVEPTPSPNTMKIILSEKRQDNHSKTYTEVTDSQPHFINA
                     ILQVKGVKSVFHVLDFIAVDKAPKADWETVLPLVTATLNQDQQQSDTTQPEPDTHFGE
                     VKAEVLKFKNIPYQVKLTTPKEEKRQQLSDIFVNAMLEAQKPHDNVVFLRKWETLGVR
                     YGDLDDVMQSVVEEINALYPEHVLNLLVQEAKNTDVTVPQKQYEHVTLETYQQEIDWK
                     ARLRMLKSFPTPTSDDYPLLDYALNEDKVPLRREAVVLLSMIEDRETLPYLYKGLHDK
                     SPAVRRTAGDSLSDLGFKEALPEMEKALDDPQKIVRWRAAMFLFDEGGPEQLVTLKAH
                     QNDPAYEVKLQIEMAITRIENGEAALGSVWKQIANRNQ"
     gene            10310..10750
                     /locus_tag="PTC08_000283"
     CDS             10310..10750
                     /locus_tag="PTC08_000283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BrxA/BrxB family bacilliredoxin"
                     /protein_id="HDK5681817.1"
                     /translation="MNAYDAYMKELAAQMRGELTQNGFESLESEDSVSQYMNNVKDED
                     TTFVVINSTCGCAAGLARPAAVAVAEQNEYKPTNKVTVFAGQDKEATAKMREYIQQVP
                     SSPSFALFKGSELVHFIPREHIEGRDINDIAMDIKDAFDTHCRA"
     gene            11559..12512
                     /locus_tag="PTC08_000284"
     CDS             11559..12512
                     /locus_tag="PTC08_000284"
                     /EC_number="2.1.1.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidylate synthase"
                     /protein_id="HDK5681818.1"
                     /translation="MNPFDAAYHDLCKEILEIGNRRDDRTATGTISKFGHQLRFDLSK
                     GFPLLTTKKVSFKLVATELIWFIRGDTNLRYLLQYNNNIWNEWAFEKYVQSEDYTGPD
                     MTDFGHRAQSDAAFAETYRKEMTKFKQQILTDDDFMKKHGDLGNVYGKQWRNWVSADG
                     QQYDQLKALIEQIKTNPNSRRHIISAWNPTEIETMALPPCHTLFQFYVQDNKLSCQLY
                     QRSADIFLGVPFNIASYSLLTHLIAKECGLEVGEFVHTFGDAHIYSNHLDAVKTQLAR
                     SSFAPPELKINTDRSIFDIEYEDLEIVNYESHPAIKAPIAV"
     gene            12531..13010
                     /locus_tag="PTC08_000285"
     CDS             12531..13010
                     /locus_tag="PTC08_000285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase"
                     /protein_id="HDK5681819.1"
                     /translation="MTLSILVAHDQQRGIGFEGQLPWYLPNDLKHVKKLTTGHTLVMG
                     RATYESIGKPLPYRRNVVITSNPDFKPDGVEVIHSIEEIDAIGDDHIFIFGGQTLFET
                     FIDRVDDMYITVIDDKFQADTFFPPYTFEDWEVTSAVEGTVDEKNKYPHTFLHLTRK"
     gene            13029..13883
                     /locus_tag="PTC08_000286"
     CDS             13029..13883
                     /locus_tag="PTC08_000286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegV family protein"
                     /protein_id="HDK5681820.1"
                     /translation="MQQRIIVTDSTSDLDHAFLKQHNVHIVPLSVTINGESYEDQKDI
                     SSESFSQYLGDSSYDFKTSQPPIGRFVETYEKLGQNGAEIISIHLSSGLSGTYQTAVQ
                     ASEMVDAKVTVIDSKSISFGLGYQLQNAIRWVEEGIPTEEIISKLQNLQKNIKLYVII
                     GQLDQLIKGGRISKTKGLIGNLMKIKPIGSVIDGKLEMIHNARTQNASIKYVLKDLKP
                     FVGDASIKSIGISHAKAKDFMDKFKEKLDETFTVQNFDFGHTTPVISTHTGAGAIGLV
                     VLKDSSDS"
     gene            13901..14425
                     /gene="msrA"
                     /locus_tag="PTC08_000287"
     CDS             13901..14425
                     /gene="msrA"
                     /locus_tag="PTC08_000287"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HDK5681821.1"
                     /translation="MALATLAGGCFWCLVKPFDTFDGVERVTSGYSGGTVENPTYEQV
                     CTNTTGHVEAVQIEYDDNVISYDDILDIYFKTFDPTDKNGQFFDRGDSYRPVIFYHNE
                     AQQQAALNKIDALNQSRIFSDPVVTPVEAYRNFYPAEEAHQDYYKKHPLHYAQYQRGS
                     GRKAFIEKHWGDQA"
     gene            14422..14850
                     /gene="msrB"
                     /locus_tag="PTC08_000288"
     CDS             14422..14850
                     /gene="msrB"
                     /locus_tag="PTC08_000288"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (R)-S-oxide reductase MsrB"
                     /protein_id="HDK5681822.1"
                     /translation="MIKKDKKDLTDLEYLVTQQDGTEPPFQNEYWNHFEKGVYVDKLS
                     GKPLFTSNDKFESDCGWPSFSKAIDDQEIIELVDKSFGMLRTEVRSEGSNSHLGHVFN
                     DGPKDRGGLRYCINSAAIQFIPYEKLESLGYGDLVKLFDK"
     gene            14864..15364
                     /locus_tag="PTC08_000289"
     CDS             14864..15364
                     /locus_tag="PTC08_000289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucose transporter subunit IIA"
                     /protein_id="HDK5681823.1"
                     /translation="MFKKLFGKSEEANKEIQVYAPMTGEYVKIEDIPDPVFAQKMMGD
                     GFGIRPTEGKVVSPITGVVDNVFPTKHAIGLKADNGLEVLVHIGLDTVQLNGEGFETL
                     VNSGDTVKVGDPLVTFDVDYIDQHAKSIVSPVIITNTDQTVAIDIQQVAQLNKGETSV
                     IEVTMK"
     gene            15364..15585
                     /locus_tag="PTC08_000290"
     CDS             15364..15585
                     /locus_tag="PTC08_000290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YozE family protein"
                     /protein_id="HDK5681824.1"
                     /translation="MKDVSFYQFALTVRGRKDDAGQLAEQIFQDLSFPKYDKNFDALS
                     EYIETEGNFTLPMSVFDDLYEEYQEWLQF"
     gene            15636..17165
                     /locus_tag="PTC08_000291"
     CDS             15636..17165
                     /locus_tag="PTC08_000291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HDK5681825.1"
                     /translation="MSHPFSLCHTIKSARVYADHYNANMDLTRRAENRLKDSPNQRKT
                     PRYVSLKTFMLSIILTVLLTGIIIFGFNYFFQQYSKDEKISENAQKLSEVYEILASDF
                     YQKQDKEQLLDEAIHGMTKSLKDPYTEYLSKEKTASFHEDVSGDFVGIGAELQQKGKQ
                     IIITSPMQDSPAEKAGLKPRDELIAIDGKSIKGKTLDAIIPKIRGKKGTEVKLTVKRN
                     GEEKELTVTRDTIHVKSVKYEKHGNVGVFKINKFQEGTAGELKSAIQQAQKSGIKNIV
                     LDLRNNPGGLLDEAVKMANIFLDQDETVVQLEKGDQKESIKTPNAPLEGVKDLKVSIL
                     LNEGSASASEVFAGALHDHKVAKIYGEKSFGKGIVQTTREFEDGSLLKFTEMKWLTPN
                     GHYIHGKGIQPDIPVKGADYENISVIPTKTTYHQGQEDKHVKSIKIGLKALGYDVGTI
                     DEHYNAQLTTAVKQFQQKNDLTANGMFNKETNGVFTERLVEKASSEDLMLEQTLKKVE
                     E"
     gene            17165..17680
                     /locus_tag="PTC08_000292"
     CDS             17165..17680
                     /locus_tag="PTC08_000292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDK5681826.1"
                     /translation="MGLLRKATLQDLDTIEQLTEEAKALMIKDDNPQWDHRYPLKTHF
                     NTDIESGSLFVYDEDDVIQGFIVIDQQAPDWYDTLEWPVDKSQAYVIHRLVASPQYRG
                     TAQALMTFAIALAKEHNIDILLTDTFSQNQRAQRLFDKYGFIKIGEMTSTEFPFDKGK
                     PFYAYYKKLTE"
     gene            17690..18775
                     /locus_tag="PTC08_000293"
     CDS             17690..18775
                     /locus_tag="PTC08_000293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase"
                     /protein_id="HDK5681827.1"
                     /translation="MVKIAFTGGGTVGHVSVNLSLIPTALEKGHEAFYIGSKQGIERE
                     MITSQLPETTYYPISSGKLRRYLSVENLKDVFKVVKGIGDARKVLKRERPDIVFSKGG
                     FVSVPVILAAKSLNIPTIVHESDLTPGLANKIAIKFAKRLYTTFEDTLKYVPHEKSDF
                     VGATIREDLKHGHQQNGYALTGFTPNKKILLVMGGSMGSLKINEAIRRHLDELLQTYQ
                     IIHLTGKGLVASNINQDGYVQYEFVKEELTDLLAITDTVVSRAGANAIYEFLTLRLPM
                     LLIPLGLDQSRGDQIDNAKYFEKQGYATMLDESELSSDTLLLALTELEKNRHQYIQNM
                     ESFTESYTRHDLLEKIIQDALQLEVGA"
     gene            18772..19395
                     /locus_tag="PTC08_000294"
     CDS             18772..19395
                     /locus_tag="PTC08_000294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HDK5681828.1"
                     /translation="MTYWKKISLLIVFTLIFSMIAMFHESRLGKWIDNEVYNLIYASE
                     SFISTAIFFGATQIGEVWAMIALSLVMVALLMLYRYKIEALFFALTMLLSGVSNPILK
                     NIFDRERPTLLRLIDISGFSFPSGHAMGSTAFFGSVIYVAHRILKGKAKSVAMTLSVL
                     MIVLISSSRVYLGVHYPTDIMAGIVGGLFCIVLTQLILRHPLAQTKI"
     gene            19891..20568
                     /locus_tag="PTC08_000295"
     CDS             19891..20568
                     /locus_tag="PTC08_000295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HDK5681829.1"
                     /translation="MKKVLIIEDEQNLARFIELEFKHENYEVEVKYDGVSGLNRALQH
                     DFDLILLDLMLPEMDGLEVCKRLRTQKDTPIIMITAKGEIYDKVTGLDIGADDYIVKP
                     FEIEELLARSRALIRRYSDENVSDTNVVEIDGIKIDKSAFHVTYQSEKLELTKTEFDL
                     LLLLAENKNRVLHREQILDHVWGYESEVETNVVDVYIRYLRNKLKRIDKQKLIETVRG
                     VGYVIRQ"
     gene            20565..21932
                     /locus_tag="PTC08_000296"
     CDS             20565..21932
                     /locus_tag="PTC08_000296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GHKL domain-containing protein"
                     /protein_id="HDK5681830.1"
                     /translation="MKQSTLKTKWTFVTTLITFLIIFIFCLLIIYAISSLLKQNEFDK
                     AERSADDLYNLLETKPMKNITALEFSSVLDNYQKVILYNKSGKKIFENVSTTNVKFTP
                     PFQAYDTRNIKILRTDKGSFIIVSTPINTPYFKGHATIVHSLKEYDDLLNFITYLALT
                     FGLIALFVTASLSYFFSSQITQPINIITEKMTQIRRNGFQEKLEVPTNYEETDALIDT
                     FNSMMMKLENSFNQQRQFVEDASHELRTPLQIIQGHLNLVQRWGKKDPDILEESLNIS
                     IEEMNRITKLVEELLLLTKDDTRSTENQTEKVDVNNEIRSRLHALQQIHPDYQLDFHT
                     SQDFIYLEINSFHLEQILLIFLDNAIKYDTQNKHISIETKLISNQVVIKITDRGLGIP
                     QADQEHIFDRFYRVDKSRSRQQGGNGLGLSIAHKMVTLYHGRISVESEVGYFTTFTIS
                     FDSCG"
     gene            22024..24813
                     /locus_tag="PTC08_000297"
     CDS             22024..24813
                     /locus_tag="PTC08_000297"
                     /EC_number="1.2.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002493623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase E1 component"
                     /protein_id="HDK5681831.1"
                     /translation="MMKNDKQVTEAPVNFGTNLGLILELYDQFLEDPSSVTEDLQVLF
                     STIKDGEATTSSTTESSSGDSTIKRVMRLIDNIRQYGHLEADIYPVNVPERTNIPKLK
                     PEDFNLDQATLENISAEIVSDHFKDIYDNAYEAIERMEERYKGPIAFEYTHINNNKER
                     IWLKRRIETPYKASLNKEEKINLFKLLAHVEGFEKYLHKNFVGAKRFSIQGVNTLVPM
                     ITQTIKRAAEEEISNIQIGMAHRGRLNVLTHVLQKPYEMMLSEFMHTDPMKFLPEDGS
                     LSITSGWTGDVKYHLGGVKTINNHGIEQKITLANNPSHLEVVAPVVTGRTRAAQDQTD
                     YAGKVQTDFSNAMPIIVHGDAAYPGQGVNFETMNLGNLDGFSTGGTLHIITNNRIGFT
                     TDPEDGRSTTYATDVAKGYDVPIMHVNADNVEATIEAIDIAMEFRKAFNKDVVIDLVG
                     YRRFGHNEMDEPTLTNPLPYKQIQKHDTSEVIYGKQLIDEGIMSQDEMDEVMENVQKE
                     MRSAHDKIDKNDKNDNTDMSIPDSIAQPLKSNESELSYDRLKEINDAMFNYPEGFNVF
                     KKLNRILEQRKQPFESEEGLVDWAHAEQLAFATVMQEGTPIRMTGQDSERGTFSHRHA
                     VLHDQENGDTFTPLQHVPDQKATFDIHNSPLSEAAVVGFEYGYNVQNPSSFNIWEAQF
                     GDFANMAQMYFDNFIFSGNAKWGESSGLTFLLPHSFEGQGPEHSSARLERFLQLAAEN
                     NMTICNLSSSANYFHLLRAQAASLGTDAMRPLVVMSPKGLLRNKTVAQPISAFTSGGF
                     EPILPEAHDAKKIKKVILASGKMFIDLKEKLANSPNEAILLIAVERLYPFPEEEIRSV
                     LETLPNLKTVAWVQEEPQNQGAWHYAYPMLRDIIGDQYELTYHGRKHRAAPAEGDGEI
                     HKLVQNNIIENSLNI"
     gene            24828..26105
                     /gene="sucB"
                     /locus_tag="PTC08_000298"
     CDS             24828..26105
                     /gene="sucB"
                     /locus_tag="PTC08_000298"
                     /EC_number="2.3.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyllysine-residue succinyltransferase"
                     /protein_id="HDK5681832.1"
                     /translation="MAEVKVPELAESITEGTIAEWLKQVGDTVEKGEAILELETDKVN
                     VEVVSEEEGTIQELLAEEGDTVEVGQAIAIVGEGGAATSSSDDSKTDSKDASNKSEQK
                     ASDKQEQKEEKSSSDKESQSSPSNERINATPSARRAAREKGISLSEVSGKANDVVRKE
                     DVERGSQQKSTGAAQSKEKEAATPQAPKTPSKPVIREKMSRRKQTAAKKLLEVSNNTA
                     MLTTFNEVDMTNVMALRKRKKDKFMEDHDGTKLGFMSFFTKAAVAALKRYPEVNAEID
                     GDYMVTKQYYDIGIAVSTPGGLLVPNVRDCDKKNFAEIEQEIANLASKARDNKLTLDD
                     MMNGSFTITNGGIFGSMMSTPIINGSQAAILGMHSIITRPVAIDQDTIENRPMMYIAL
                     SYDHRIIDGKEAVSFLKMIKELIENPEDLLLES"
     gene            26304..26543
                     /locus_tag="PTC08_000299"
     CDS             26304..26543
                     /locus_tag="PTC08_000299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5681833.1"
                     /translation="MNRVFIYILIVIGIANIIAQFGFIIASLFGFMHYYPIFQLLGTS
                     LLVLFAIDHLKFNHSKSVYLILGLALITSGVLIKL"
     gene            26608..27432
                     /locus_tag="PTC08_000300"
     CDS             26608..27432
                     /locus_tag="PTC08_000300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HDK5681834.1"
                     /translation="MAQFRSVTLGTKSIDKTIDLFHNMLGMAYDRKGNRVQFGDAQLS
                     PGTRLQFVEIAESIKPKHQHFESVALRTPSNHGIDEYMAILQEHQYAFEGPAQLNGHQ
                     RLQFSDANDQHFNIFSDEANVGVGLGMPSEESSVSPLHQVQGLGPVMLRTQEPAVTMT
                     LLSNLFGFKPIAEYTSPQTNQSVVVMEGEGGGLGAEVHIYQSDTIQIPPYGIVDQLEF
                     TAQHEAEFNDALNQLTHHDIPFQQLKNDQHETRSIRVNDMSGLALILTLAHATKGS"
     gene            27436..27639
                     /locus_tag="PTC08_000301"
     CDS             27436..27639
                     /locus_tag="PTC08_000301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499941.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5681835.1"
                     /translation="MLHETWKTRTPLKKVKVVHTDAKKFTVSDMLTVGETYDVVNETE
                     EYYQIIDNSGHVGGYYKTYFEEV"
     gene            27737..28534
                     /locus_tag="PTC08_000302"
     CDS             27737..28534
                     /locus_tag="PTC08_000302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001831311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MoxR family ATPase"
                     /protein_id="HDK5681836.1"
                     /translation="MVKEFTGYINSDETVLGDAIKLFELNKNILLKGPTGSGKTRLAE
                     TLSEMTELPMHQINCSVDLDAESLLGFKTIKTSDEGHQEIVFIDGPVIRAMREGHILY
                     IDEINMAKPETLPILNGVLDYRRQLTNPFTGEVIKAAPGFKVIAAINEGYVGTLPMNE
                     ALKNRFVVINVNYIDGQTLHDVIKAQSLLQDDSLIDQIIKFNADLRTMTQQGQLSEEA
                     ASIRALIDMSDLATVMPIERAIQRSIIDKLEDEREQQAIMNAVELNF"
     gene            28546..30435
                     /locus_tag="PTC08_000303"
     CDS             28546..30435
                     /locus_tag="PTC08_000303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5681837.1"
                     /translation="MSDRFIMFNDEQLDAMKMMMLQDLARLLLKNPNTQVKVHKFPYY
                     DAINDEVICSSFWAHRPEYVEHTGLKTDVLLATYSYFHMDPQIVNKVVANEEGFNHPK
                     LYRQLFKMMEEMRILNLIERERPRTQKLIQLRKQTRQQYSASQMNVYQTKTLFTDLFF
                     LNLEYSFLRDDFYTIPHIHPDFQPTLEFIYQYLPDAFQLQSSEETMYLTQRIMYQVDD
                     WLDEDMLNEYYHIPRHIYEALCQFTLEDLKRVDTANTDQHNGEKEDDVETEKIESKNI
                     DSKSAGGAYLEMELHEGENSDVLGDDSAREGDSTDDMTDMMSKKGKGSNDTLDDQEGG
                     EQGPSNALLSLKGINQYVDIKWHVPDILPEYIESYRQVQTSVQFEIKDLIQIIKKTID
                     REYQDVRANLTKGRLQRNLVNWFIDDQYKLFYKKADQSRTFDATFTLLIDASASMHDK
                     MDETIKGVVLFHETLKALNVKHEILAFNEDAFDADAQYQPNIIDEIINYHQSTFNTEA
                     PRIMSLTPQDDNRDGVAIRVASDRLLSRSEQQRFLIVFSDGEPSAFNYSQDGILDTYE
                     AVENSRKLGIEVFNVFLSQESITESIEQTIHNIYGQYAIFVEGVEHLPSLLSPLLKKL
                     LLKSF"
BASE COUNT        10439 a         5419 c         5892 g         8734 t
ORIGIN      
        1 aaaaaagaga ttgaagattt acgtattcgt gttgcctcta gtcgaccaca agataataag
       61 agtttcgcaa atcaaagttc aaaccaaaat aataacgtag atattttaaa acgaatttct
      121 aaccttgaaa aagcagtctt tggaaaatag ggattgtttt ttaattgaaa aatgctataa
      181 ttttttgagg atatttcgtg taatcgctat atgttacgac atatagagga aagtccatgc
      241 tcacacagtc tgagatgact gtagtgttcg tgcttgatga aacaataagt caaggcaata
      301 ttcgatattg acggcaacga cctaacctaa gtcttttgat acggttacat tagtttgaaa
      361 gtgccacagt gacgtagctt tattagaaat aatgaaggtg gaacgcggta aacccctcga
      421 gtgagcaatc caaatttggt aggagcactt gtctaacgga attcaacgta tagacgagga
      481 aaagtacagc atacttttca gacagatgat tacaactgaa gtaccagtgt aactagtgca
      541 cgtaatgagt acatcagtac agaacatggc ttatagaaat atctcagact agtcacctta
      601 gggctggaac aaaacgttcc agcccttcag tttgtcttga caactcatga aataagaatc
      661 agtatcaata gagaggactt atctttacta tagacacata gaaatctttt gcgtagcgga
      721 ctgttgaact gaataaagaa tgagaaccca agcgcgcaaa caataaaacc gaatatcgat
      781 aacataataa attaaataaa tataaaaaca atgatgaaaa tttagtacat aaaccaatat
      841 tcaaaaggag gaattttcgt gtatcaacta ttagcagttt gtccaatggg gcttgaatca
      901 atcgtcgcga gagaagtcca ggatttaggc tacgacacac gcgtagaaaa tggacgtatt
      961 tattttgaag gagacacatc tgccatcgtt aaagccaatt tatggttacg cactgcagac
     1021 cgtgtcaaac ttatcgttgg acaatttgaa gctgtaacct ttgattcatt attcgaacaa
     1081 acgaaaaatc taccatggga acaattcatc ccaacagatg gtcaatttcc agtacaagga
     1141 cgtagtttaa aatcaaagtt atttagtgtt cctgatgtgc aggcgattac taaaaaagca
     1201 attgtcgaac gattgaaaaa tgcacatcaa gtgtcaggtt ggttggatga atcaggcgca
     1261 aaataccctg tagaagtcgc tattttaaaa gataaagtct tgttaacaat tgatacatct
     1321 ggctccggtt tgaataagcg cggttaccgt ctggcgcaag gtgaggcgcc gattaaggag
     1381 accctcgctg caagtttagt taagttagcc aattggacag gtgatacacc gcttatagat
     1441 ccattttgtg gttctggaac aattgcgatt gaagcttgtt taattgcgca aaatatcgca
     1501 cctgggttta atcgttcatt tatttcagaa caatgggata tcattccaaa agggctgtat
     1561 gatcaaaaac gtgcagaagc tgatgaactc gccgattatg ataaagaaat cgaaatttac
     1621 gcttctgata tcgatcctga aatggttgaa attgcacaac gcaatgcaga tgaggtcggt
     1681 gtcggtgata ttatccgctt cgaagtcaaa gatgtgaaca cccttaccat taatcacgac
     1741 ggtccaattg gtctaatcgg taacccgccg tatggtgaac gtattggtga ccgtgcagaa
     1801 gttgaagaaa tgtaccgtaa tctcggcatt ctcatgcaaa accacccgaa tttgtcactt
     1861 tacattatga caagtaacaa agaatttgaa tatctcgcaa accgtaaagc tacaaagcgt
     1921 cgtaagttgt ttaacggcta tattgaaaca acttattatc aatattgggc aaataaaaaa
     1981 tcttaagcca ttttaatttt tacgaaaaga gggagtactt tgtatcaaga taaagaattt
     2041 aaaaaaggca ttcttttcgc tttattggct tatgtcattt ggggcacttt gccattatat
     2101 tgggcactca ttcacgacgt cgatccgatt gaaacactca tgtatcgtat cgttttatca
     2161 ctcattttta tgctgctcct tttacccatc atcgggcaat ggcagcgatt tgctcaagat
     2221 atggcgcaac taaaagcgaa accgttcaaa ctattgatta tcattttagc aggctatatc
     2281 gtgacggtga actggggcac gtttatttat gcgattgatg ctggttttgt attacaaaca
     2341 agtttagggt attatatcaa tccgctcgtc agcattttat tatccatgat attttttaaa
     2401 gaacgtttca accgtctcga atgggtggcg attctctttg ctgtacttgg cgtcgtttat
     2461 atgactttta aagtaggcga atttccatat atttcgttaa ttttagcttt ttcatttggc
     2521 atttatggtt tactgaaaaa actcgttcct atgccagcat tgagtagcat taccattgag
     2581 tcactggcga cggcacccat ggcgatcatt tatttaatta tcgttggaca aacagctgat
     2641 ttaagtatcg gatggaatat atcgacattt tggttgctct tttcaggggc tgtgacggca
     2701 ttaccgttac tctcattttc agaaggggcg attcgtattc cgttatcatt aatgggcttt
     2761 attcaatacg tagggccgac gctcatcttt atacttggta tttttgtatt taaagaacca
     2821 tttaatgtcg accaatttat tacattttgc tttatttggg tcggtatcgt gatttatgtc
     2881 atttctcaaa tcctcaaaat taaaaagcgt ccacaaccat tccaatatca aaattaacca
     2941 aaatataagc taacatcgta cattgactgt gcgatgttat tttttgcttt caatctcata
     3001 ttaaaatgcc attattttta atcacggcaa tggcatttat cgccataaac tcatataata
     3061 cttaaataaa gacgtttaaa acaaggggaa tccaatatct atgcagaatc aagaacaact
     3121 ggatatttta tataaactaa aaaaagaagt ggaaaaatct gatcattccg cttttataca
     3181 tacgattaac caaatgatta aaaaggtgta tctaaaccac tacactatga cctttgtcgg
     3241 ccatttttca gcaggtaaat cgacaatcat taatcgtctt atcggccaag acattttacc
     3301 aagttcaccc gttccgacaa cgagtaatac tgcattagta acaattgcag aggcgcctgg
     3361 tattacagcg aacatcgaag gtcaaaagta tacacaattg aattcttatg atgatgtcaa
     3421 acaaatgaac cgcgaaaatt ttcacgttga gtccattgac attcgtattc aaagtgatgc
     3481 gtttcataaa ggttttacat ttcaagatac accaggtgtc gattccaatg tacaatcaca
     3541 caatatgcaa acggagcaat ttctgtatac gagtaatatc gttttctata cggttgatta
     3601 taaccatgta caatccgcgc tgaactttca atttatgaaa cgtctgaatc gtgcaggcat
     3661 tccagtcgtt ttcgttatta accaaattga taaacatgac gaaaacgaac tcacatttca
     3721 aacatttcaa aatcgtgtgg aacaatccgt gagtgagtgg gatattgatt tactcgaaac
     3781 attttatatt acaaagtttg aacatccaca aaatcaattc gatgcgttac gcgcctttat
     3841 tatggaacaa gatcagcacc gtgaagctgt gaaagactat gttgcacgta tgaaacaatt
     3901 tattcatcaa catcaattga actatttaca acatgaaatg gatgaaattt tagaacgact
     3961 caacatcgaa gcgacacaat tcgatcaagc gtatcaatca catcaacaaa atgaaatgat
     4021 cagcgaggaa gcacaattgt tgaatgatgc ggtagcgttg aaacattatt taaaagataa
     4081 acgccgctcc ataattgata atgcgtatat tatgacacac gacatgcgtg aaacgattcg
     4141 ttattgtttg gaaagtatga cgaaggattt taaagccgct ggactgttta ataaaaagaa
     4201 aaaaacagaa gaagaacgtc aaacacgcct taatgaatta atgatagctc ttcaaagtaa
     4261 agttgatcac caaatcatta aaccgatgca agaagatttg tcatttctca cacgttttat
     4321 taatgatacc gatttgaatc agcgtatttt aaaccaaaaa ttgacattac cgacatccat
     4381 tataaccgat ttgtatcaaa cacaaattca aataacgaat caatatgtgt taactttctc
     4441 aaatgatgtc atgaaagcta tcaagcacta tattttaaaa gaactcgaac cacttgatga
     4501 taccattatt gacaatgtcc acgcagaaga gcacctcgtc gatgaatcaa atgatagttc
     4561 ggcgtataca cgttatattg aattgcgtaa cttgtctcag tcgttaaaga cagaaaatta
     4621 tcgtcattat tatattcata tggaagattc gctggaccgt ttgatcgatc gcacagaaat
     4681 tcaatatcaa gtgaaatcaa atgaagataa taaaaaagat gtgcaacaac aagaggatgt
     4741 tgtcacagct gagaaaaacc cgattaacga cgcacaaatg acccaagcat tagatattgt
     4801 caaaaatatc ccattgttta aatcaagtgt aaaaaacatt gaggaaacac aggaaagaat
     4861 gcaacatcaa accgttaaaa taggtgtttt tggtacattc agcgctggta aaagtagttt
     4921 gattaatgca ttattagggg acaattattt gacgagttca cctaacccga caacagcggc
     4981 aactactgag attggctatg gcgatacgta tcacgttacg tttaaaacac cagacatgtt
     5041 gctccaacaa attaatgatg tgtttgaact tgaagggcaa caatttgaca gtatcgaagc
     5101 ctttttagaa gcgaacatag aaaaattaaa agggcgcata gacaaaagcc gtcttgcatt
     5161 tattcatgcg attgaaaaga attatgccct gtatcaatcg tatatcgctg aaggtttaaa
     5221 acatgaaatt caagctactg acgtacaaaa atggagtgct gaagatgaat atgcgacttt
     5281 cgtccaaacg gtgcatttaa gattgccact agattggttg aaagacaaag tgattgtgga
     5341 ctcattaggg ttacattcga ataaccaacg acatacgaat gaaacagaga aaatactgac
     5401 aacctctgat ttaattttat atgtgagtta ttttaatcac gcttttactg acaatgataa
     5461 agcgtttatc gaacatatga aaaatataaa tcagttaaaa gaacaacagg ctttcaaaat
     5521 ggtcatcaat gcaaccgatt tagctgaaaa tgaagttgat aaacgtgctg tgcgtgacta
     5581 tgtagcagat gcgttaatgc aagtacaaat gcaacctgaa attttttctg tatcaagtcg
     5641 tgctgcttta actaaagggg acgccggtgt gcaacaattg aaagcgagca tttcacggtt
     5701 ttcagaggtt gaatccaaac atattttaga agccaaaatg tatgaccagt tacgttctat
     5761 cgggcagtct tacacacaaa tgattgaaga ccatactgca aacgctgaaa aaatgcaaca
     5821 tgttaaacaa caattacaaa agatgcgtca aacaacgatt tttaattcgg aaagtttaac
     5881 tgcaattcgt caaaaactga ttaacgaaat agaagatcaa atgtatcact tgaatgagcg
     5941 tttaaaaatt caattattag ataatgtaaa ggccatttat aatacacaaa tgacgaatac
     6001 aacaagtttc aatgaggaaa aacgacaatc gacaaaagcg tatttgaatc aaatccatca
     6061 aaagttatat ttagaacaaa cattgatgat tgagcgtatt aaatttttct ttaacctagc
     6121 atttcaacaa gaaatggcaa cgaaaattag atcattccaa caatatcaca tacttttacc
     6181 agatattgaa acgattgaag ttgcgcctgt agaccaatca tttttaacga tttcttttga
     6241 tgacatggtc aacgcacttc cgaaacaatt gacaaagaaa aacattatgc agccacaagt
     6301 gcaaaaacaa atacaagctg acattaaaga tgaaacagtg acgttactcc aaccacgatt
     6361 agctgattta cgacaagcgc ttgaaagtat gctcgatact ctcacaacac aggcacagca
     6421 agcactagaa cagattgagt cacaagcaca acgtgaaatc gatactgtgt tagctgtcga
     6481 agtggatgat gcactgattg ctcaactaca agtagaaaca ccaaaattac tgacaatact
     6541 gaattcaaag gactgaaaac atggcacaca aacttttatt aattgatggc atggcgttat
     6601 tatttcgtca tttttatgca acgagtgtac acaaaaattt tatgcgcaat acgaacggca
     6661 caccgacaaa cggcacgcaa ggttttgtga gacatgttta cagtgcgatt cgcgatgttg
     6721 aaccgacgca cgttgcaata tgttgggata tggggaaagc gaccttccgt aatgacatgt
     6781 ttgatggtta taaacaaaat cgtcctgctc cgcccgaaga gcttatccca caattcgacc
     6841 atgtccaaca tatttctgag tcgctaggct ttttaaatat tggcgttgaa aactacgaag
     6901 ctgatgatgt cattgggacg ttaacacatg catatgcaca atcacctgac cacgaagttt
     6961 atatcattac tggggatcgc gatttattac aatgtgtgag agacaacgtt tatgtatggc
     7021 tcatcaaaaa aggatttact gaatatagta agtatgacag agcgcgattc gaattagaat
     7081 atcaattaca accgccacaa ctcattgaag tcaaagcgtt tatgggagac acagcagatg
     7141 gttatccagg tgtaaaaggc atcggtgaga aaacagcgat taaactggtt cagcaatatg
     7201 gctctgttga ggaagtgatt gcgaatgtgt cacagcttac gcctggacaa cagaaaaaga
     7261 tagcacaaaa tatggaaaat ctacgtttgt caaaacaact ggcaacgatt gaattgaatg
     7321 tcccattatc catcgacacg ttattcgagc aaatggcaca tcatgtcgag ttaaatcacg
     7381 tactcgcagt attagatgag catgagttgt ttgtttcaaa acgatttgtt caaaatttgt
     7441 aatcttaaaa ttaaacaaag caaggaaaag agtttagacg atactcgcta acattgattt
     7501 ccttattaaa aaatgtcgaa gcgtgtgaca tgtgtgaaca tgtgcataac acttcgacat
     7561 tttttataac attatgaacg acctaacgct tgatacaatg catcttgagc taactgattc
     7621 gcagctttat tttgtgcgcg tggaatccat ttgacaaatg ccaattcaaa atcatgtgtc
     7681 atttgtaaat agcgctccaa ataaggttta aaacgtccat ttttcacaaa ctcacgattc
     7741 actgcatctt caattagctg tgaatccgta aaaactaatg cattcaaaac tgccaatgtt
     7801 tgtgcttgct ctaatgcaaa cagtaacgct tcccattcag cactatgatt gtctaacgca
     7861 tcgagcactt ttgtaaatgt atagcgttca ttttctgtaa cgataacgac gccacatgca
     7921 cttaatcccg gattgccttt cgttgctgca tcaaaatata ttttagccaa cttcacgaca
     7981 ccacacttaa atgtattttc gtatttaagc ttaccatatc atgtatcata gcgtatcgtc
     8041 tttaattttg ttgcgacgat aaagtgactt tgcccaataa ccgaatggga cgttcagaac
     8101 agttgttaat aattttaata aatacgtcgt gatgaaaatt tctagtacga caccgttggg
     8161 taaactacca taaaaagcaa tcattacgaa aagcgctgta tccacaatcg aactcaacgt
     8221 tgtactccca taggcacgaa tgaaaaaggt acgatctgaa cgaaatactt ttttaatcat
     8281 attaaagaca agtacatcga tatgttgacc aataatgtaa gcggttatgg atgcgaaagc
     8341 gatacgtgga acgacatcga aaattgcttt catagcatct tgcgccatgt caacttcact
     8401 cggttgaaac gcgagcgaaa cttgcatcac gataatcata ataaaagtag acgaaaagcc
     8461 aagccaaacc gcttttttcg cgactttacg accataaata tcatttaaaa tatctgttgc
     8521 aagataaatg gatgcgaaca tcacatttcc taacgttgca gaaatcgtaa atatatccac
     8581 tgttttaagc acttggatgt tggcaataat cgtgcctatc gcaacccaag catacaaacc
     8641 tgatttacca aaaagtcgaa acatcactac catgagtacg aatgtgacga taaacgaccc
     8701 taaacctaac cattcattat acaatttaat gacctcctaa attttgttac agcgggtgtt
     8761 tagaaaccgc tcttcacgat aacttttcca ttataatcaa cagctttata tttttcaata
     8821 gccttccgtt tttatttata ggcatgtcat gtttcttgat gtcgctgaag attaaacgct
     8881 tcaatgtcca tacaaatcat gttacgatag ttcatattgt acacactata tttaaaagag
     8941 gtgacttacg tgctaacaga ctctgagaag aaggccattg cttcaatcga tcatttatct
     9001 caacaatatt gtgaacattg cttggttaaa gcgcaccttc gaaagacaaa agggaaaaca
     9061 caagcacatc acttctgtat caatgcgtgt tcaatcggca aacaaattca acaattaggc
     9121 aatgcgctac aatgagggct gtagtacatt gacgaggagg tttaacatgg aaattattaa
     9181 ggtcgaacct acgcctagtc cgaatacgat gaaaattatt ttatccgaaa aaaggcaaga
     9241 taatcattca aaaacttata cggaagtcac agatagtcag ccacacttta tcaacgccat
     9301 attacaagtt aaaggtgtga aatctgtctt tcatgtatta gattttattg ccgttgataa
     9361 agcacctaag gcagactggg agactgtgtt acctctcgtt acggcgacac tcaaccaaga
     9421 ccaacaacaa agcgacacaa cgcaacctga accggatact cattttggtg aggttaaagc
     9481 ggaagtactt aagtttaaaa acattcctta tcaagtgaaa ctgacaacac ctaaagagga
     9541 aaagcgtcaa caattgagcg acatattcgt caatgcgatg ctcgaagcac aaaaaccgca
     9601 tgataatgtt gtctttttac gtaaatggga aacattaggt gtccgttatg gcgatttaga
     9661 tgacgtcatg caaagtgttg tagaagaaat caatgcgctt tatcctgaac atgttttgaa
     9721 tctactcgtg caagaggcga aaaatactga tgttacagtg ccacagaaac aatatgaaca
     9781 cgtgacatta gaaacatatc aacaagaaat tgattggaaa gcacgattac gtatgttgaa
     9841 gtctttccca acacctacaa gtgatgacta tccattactt gattatgcct taaatgagga
     9901 taaagtgcca ttacgccgtg aagcagtcgt attgcttagc atgattgaag atcgagaaac
     9961 tttgccatac ttatataaag ggctgcacga caaaagtcct gcagtgagac gaacagctgg
    10021 tgatagttta agtgatttag gctttaaaga ggctttacct gaaatggaaa aagctttgga
    10081 tgatccacaa aaaattgtgc gatggcgtgc agcgatgttt ctttttgatg aaggtggacc
    10141 agaacagctg gtaacactca aagcgcatca aaacgatcca gcttatgaag tgaagttgca
    10201 aattgaaatg gccattacac gtatcgaaaa cggggaagca gcacttggat cagtgtggaa
    10261 acagatcgca aatcgtaatc aataaatcaa tacaagggag cactataaaa tgaacgcata
    10321 tgatgcttat atgaaagaac tcgctgctca aatgagaggc gaattgacac aaaatggttt
    10381 tgaaagttta gaaagtgaag attccgtttc acaatatatg aacaatgtca aagatgaaga
    10441 tacaacattt gttgtgatta attcaacttg tggctgtgca gctggtttag cacgtcctgc
    10501 agctgtggct gtagcagaac aaaatgaata taaaccaacg aataaagtca ctgtttttgc
    10561 aggtcaagat aaagaggcga ctgcaaaaat gcgtgaatac attcaacaag tgccttcaag
    10621 tccttcattt gcattattca aagggtcgga gctcgttcac tttattccac gtgaacatat
    10681 cgaaggccgt gatattaatg acatcgcgat ggacattaag gacgcattcg acacacattg
    10741 tcgcgcataa tgaacaagga gctggggcat taagtttcct cagctccttt actatatttt
    10801 gttatttatg ccaaggggtt aggatgagac ataaaaaaaa ttaaacctca atccattcat
    10861 agattgatga ttcattaata actttaaagc agtcggaaaa tgagactgaa tgagatagaa
    10921 aaaaattgat gctgttgttt ttttattttc ataaacttga cctcattttc actgtatttg
    10981 atataagatt gccgagaagg ccgaaactca cgagtgaatg cgtggtggat acttctaact
    11041 gtcacttctt tactataata gcgaatgttg tttatcgcag tagttgtctg acttctcaat
    11101 gctatcgctt ttgagaaatc tcaacagcca tactggggca gtacaacaaa atctttattt
    11161 cacatgagat ttctgtactg ctcctaaaat ccaattcggc ttccatcaaa tgaacacttc
    11221 aatcaagctg aactaagttg aagggttagc ccttaggtaa gtggatccat gaaagcaatc
    11281 aaaaattaca aatcatagtg aggacaagtt taactaaaat attgcatcaa tagcatcata
    11341 attgttgatg tcccaatcct ttttttacac ttctaaatca atagatagtg ttttcgacaa
    11401 aaggtgtcta ttcacatcat tttaacattt acaaggtaga gatactgaat atattcggat
    11461 tctgtagcta tacacttata cctgcgcata cgttgatatc gctttgaaaa tggcgtaaaa
    11521 tcgtctatta tagatactaa gagaaagagg tgaatgtcat gaatccgttt gatgcagctt
    11581 atcacgattt atgtaaagaa atattagaaa ttggcaatcg acgtgatgac cgaacagcta
    11641 cgggaacaat ttcaaaattt ggacatcagt tgcgttttga cctttcaaaa ggcttcccat
    11701 tgttaacaac aaaaaaagtt tcttttaaac ttgttgcaac tgaattgatt tggtttattc
    11761 gtggtgatac gaatttaaga tatttattac aatataataa caatatttgg aacgaatggg
    11821 cttttgaaaa atatgtacaa agcgaagatt acacagggcc agatatgact gactttggtc
    11881 atagagcaca aagtgacgcg gcatttgctg aaacttatcg caaagaaatg acaaagttta
    11941 aacaacagat tttaactgat gatgatttta tgaaaaagca cggggattta ggcaatgttt
    12001 atggtaagca atggcgtaac tgggttagtg cagacggtca acaatacgat caattgaagg
    12061 cactaattga acaaattaaa acgaatccta actcacgtcg tcatatcatt agtgcttgga
    12121 atcctactga aattgagaca atggcgttac ctccttgtca tacactcttt caattttatg
    12181 tacaagataa taagctaagc tgtcaactct atcaacggag cgccgacatt tttttaggtg
    12241 tcccgtttaa tatagcgagc tatagcttat taacacattt aattgcgaaa gaatgtggcc
    12301 ttgaagtagg cgaatttgtc cacacatttg gtgatgcaca tatttacagc aaccatttag
    12361 acgctgtgaa aacgcaatta gcacgttcaa gttttgcgcc gccagaatta aaaatcaata
    12421 cagatcgttc tattttcgac attgaatatg aagatttaga gattgtaaat tatgaatctc
    12481 atccagcgat taaagcacct atcgcggtat aaacaaaaag gagtaatcat atgacattat
    12541 ctattttagt cgcacatgac caacaacgtg gcattggctt tgaaggacag ttaccatggt
    12601 acttacccaa tgacttaaag catgttaaaa aactgacaac tggacataca cttgtaatgg
    12661 gacgcgcgac atacgaatcc attggtaaac cgttacctta tcgtagaaat gttgttatta
    12721 cgagtaatcc tgatttcaaa ccagacggcg tggaggtcat tcatagcatt gaagaaattg
    12781 atgcgattgg cgatgaccac atctttattt ttggcggtca aacgttattc gaaactttta
    12841 ttgaccgtgt tgacgatatg tatatcactg ttatcgacga caaattccaa gcagatacat
    12901 ttttcccacc atacacattt gaagattggg aagtgacatc tgctgtagaa ggcaccgtgg
    12961 atgaaaagaa taaatatccg cacacttttt tacatctcac tcgaaagtaa ttattggagg
    13021 ttagcattat gcaacaacgt attattgtta cagattctac atctgactta gatcacgctt
    13081 ttctgaagca acacaatgtc catattgttc cgttgagtgt tacaattaac ggagaatctt
    13141 atgaggatca aaaggacatt tcatctgagt ctttttcaca atatttagga gacagtagct
    13201 atgattttaa aacgagccaa cctccaattg gaagatttgt agaaacctat gaaaaactag
    13261 gtcaaaacgg tgctgaaatt attagtattc atctttcatc ggggttaagt ggcacgtatc
    13321 aaaccgctgt tcaagcgagt gaaatggttg acgctaaagt gacagtcatt gattctaaat
    13381 caatttcttt cggcttaggc tatcaacttc aaaatgcgat tcgctgggtt gaggaaggca
    13441 ttccaacaga ggaaattatc tcaaaacttc aaaacttgca aaaaaacatt aagctttacg
    13501 tgattatcgg tcaattagat caactcatca aaggtggacg tattagcaaa acaaaaggtt
    13561 taatcggtaa tcttatgaaa atcaagccaa ttggttcagt gattgatggc aagctagaaa
    13621 tgattcataa tgcgcgtaca caaaacgcta gtattaaata cgtactcaaa gatttaaaac
    13681 cgtttgtcgg tgatgcatcc attaaatcga ttggtatttc acatgcaaaa gcaaaagatt
    13741 tcatggataa atttaaagaa aaattagatg aaacttttac agttcaaaac tttgatttcg
    13801 gacatacaac acctgtcatt tcaacacata ccggtgcggg tgcgattggt ttagttgtcc
    13861 ttaaagattc atctgattca taatgatgga ggtgtcaagc atggctttag caactttagc
    13921 aggaggatgt ttttggtgtc tcgttaaacc ttttgataca tttgacggtg ttgaacgtgt
    13981 cacatcaggt tatagcggtg ggacagtaga aaatccaacc tatgaacagg tttgtacaaa
    14041 tacaacaggc catgtagagg ctgtacaaat tgaatacgat gacaatgtga tcagttatga
    14101 tgatatttta gatatatatt tcaaaacgtt tgatccgaca gataaaaacg gtcaattttt
    14161 tgatagaggc gacagttatc gacctgtcat tttttatcac aatgaagcgc aacaacaagc
    14221 cgctttgaat aaaattgatg cgttaaatca atcccgaatt tttagtgatc ctgttgtgac
    14281 gcctgttgaa gcatatcgca atttttatcc agcagaagaa gcacatcaag attattataa
    14341 aaaacatccg cttcactacg cacaatatca acgtggatca ggacgtaaag cgtttattga
    14401 aaaacattgg ggggatcaag catgattaaa aaagataaaa aagatttaac agacttggag
    14461 tacctcgtca cacaacaaga tggcacagaa ccaccatttc aaaatgaata ttggaaccac
    14521 tttgaaaagg gagtctatgt ggataaactt tctggcaaac cgttattcac atcaaatgat
    14581 aaatttgaat ctgactgtgg ctggcctagt ttttcaaaag ccatcgacga ccaagaaatt
    14641 attgaactgg tagacaaatc gtttggcatg ttaagaacgg aagtccgctc tgaaggtagc
    14701 aacagtcatt taggacatgt gttcaacgac ggtccaaaag accgtggtgg cttgcgctat
    14761 tgcatcaatt ctgctgcaat ccaattcata ccgtatgaaa agctcgaatc gttgggctat
    14821 ggtgatttag tcaaactttt cgacaaataa aggagcgagt tttatgttta agaaattatt
    14881 cggaaaaagt gaagaagcaa ataaggaaat tcaagtctat gcaccgatga ctggagaata
    14941 tgtcaaaatt gaagacattc cagaccctgt ttttgctcaa aaaatgatgg gtgacggttt
    15001 tggcatacgt ccaactgaag gaaaagtcgt gtctccaatt actggtgtag tcgacaacgt
    15061 tttcccaacc aaacatgcga ttggtttaaa agcagacaat ggtttagaag tccttgttca
    15121 tatcggttta gacactgttc aattaaatgg tgaaggtttt gaaacattag tcaatagcgg
    15181 agatacggta aaagtaggcg acccactcgt tacatttgac gttgattata ttgaccaaca
    15241 cgcaaaatct atcgtatcac ctgtgatcat tacaaataca gatcaaacag tagccattga
    15301 tattcaacaa gtagcgcaat tgaacaaagg cgagacatca gtgattgaag tgacaatgaa
    15361 ataatgaaag atgtctcatt ttatcaattt gcattaactg ttcgtggtcg taaggatgat
    15421 gctggacaac tcgcagaaca aattttccaa gatttatcct ttccaaaata cgataaaaat
    15481 ttcgatgcgt tatctgaata cattgagaca gaaggcaatt tcacattacc gatgtctgtt
    15541 tttgatgact tgtatgaaga atatcaagaa tggcttcaat tttaagtgat tgctgaagtt
    15601 ttgacacgca taaattttga gggtgatggc agaagatgtc tcaccctttt tctttatgtc
    15661 acaccattaa atctgcacgc gtctatgcgg atcattataa tgcaaacatg gatttaacga
    15721 gaagggcgga aaacagattg aaagattcac caaatcaaag aaagacacct agatatgtct
    15781 cattaaaaac atttatgtta agtattatcc tcacagtatt attgacagga atcattattt
    15841 ttggtttcaa ttactttttc caacaataca gtaaagatga gaaaattagt gagaatgctc
    15901 agaagttaag tgaagtttat gaaatattgg cgtcagattt ttatcaaaag caagataaag
    15961 aacagttgct agacgaagcc attcatggga tgaccaaaag tttgaaagac ccttataccg
    16021 aatatttatc aaaagaaaaa acagcttctt ttcatgaaga tgtttctggt gatttcgtcg
    16081 gtattggtgc ggaattgcaa caaaaaggaa agcaaatcat cattacgagt ccaatgcaag
    16141 attcacctgc tgaaaaagct ggtttgaaac cacgtgatga actgattgca atcgatggca
    16201 agtcaatcaa aggaaaaacg cttgatgcaa ttattcctaa aatccgtggt aaaaaaggaa
    16261 ctgaagtgaa attgacagtt aaacgtaacg gggaagaaaa ggaactcact gtgacaagag
    16321 atactatcca tgttaaaagt gtaaaatatg aaaaacatgg caatgtaggt gtgtttaaaa
    16381 ttaataaatt ccaagaaggg acggcgggag agttaaaatc tgccatacag caagcgcaaa
    16441 aatcaggtat taaaaatatc gtccttgatt tacgtaacaa cccaggtgga ctccttgatg
    16501 aagctgtaaa aatggcaaat attttccttg atcaagacga aacggtcgtt caattagaaa
    16561 aaggcgatca aaaagaatct atcaaaacac caaatgcgcc gttagaaggt gtgaaagatt
    16621 taaaagtatc gattttactc aatgaaggtt cagcaagtgc ttccgaagtc tttgctggtg
    16681 cattacatga tcataaagta gccaaaattt atggtgaaaa atcgttcggt aaagggattg
    16741 tacagacgac acgtgagttt gaagacggtt cgttattaaa atttactgaa atgaagtggc
    16801 tcacacctaa tggccattac attcatggta aagggattca acctgatatc cctgttaaag
    16861 gtgcggatta tgagaatatt tctgtgattc ctaccaaaac aacatatcac caaggacaag
    16921 aagacaaaca tgttaaatca ataaaaatcg gtcttaaagc acttggttat gatgtgggta
    16981 ctattgatga acattataac gcccaattga ctaccgcagt aaaacaattt caacaaaaaa
    17041 atgatttaac ggcaaatggg atgtttaaca aagaaacaaa tggtgtattt acagaaagac
    17101 ttgtcgagaa agcatcgtct gaagatctga tgctagaaca aacattgaaa aaagtagagg
    17161 agtgatgggc ttgttaagaa aagcaacatt gcaagatctc gatacgattg aacaattgac
    17221 tgaagaagca aaagcactca tgattaaaga tgacaaccca caatgggacc atcgctatcc
    17281 tttaaagaca cattttaata cggatattga atcaggtagc ctctttgtct atgatgaaga
    17341 tgacgtgatt caaggtttta tcgtgattga tcaacaagca ccagattggt acgatacact
    17401 cgaatggcca gttgacaaat cacaagcata cgtgattcat cgccttgtag cctcgccaca
    17461 atatcgtgga acagctcaag cgttgatgac ttttgcgatt gcattagcga aagagcacaa
    17521 cattgatatt ttattaacgg atactttttc acaaaatcaa cgtgcacaac gtttatttga
    17581 taaatatgga ttcattaaaa tcggtgaaat gaccagcaca gaatttcctt ttgataaagg
    17641 caagccattt tacgcatact ataaaaaatt aacagaatag agggttatta tggtaaaaat
    17701 tgcatttaca ggcggcggta cagttgggca tgtgtccgtg aatttaagtt tgataccgac
    17761 tgcactcgaa aaggggcatg aagcttttta tattggttca aaacaaggca tcgagcgaga
    17821 aatgattaca tctcaactcc ctgaaacaac ttattatccg atttctagtg ggaaattacg
    17881 tcgttactta tctgttgaaa atttgaaaga tgtctttaaa gtcgttaaag gcattggaga
    17941 tgcacgtaaa gtgctaaagc gcgaacgacc tgatatcgta ttttcaaaag gcggcttcgt
    18001 atctgttcct gtcatactcg cagcgaagtc actgaacatt ccgaccattg tacatgaatc
    18061 agatttaaca ccagggcttg ctaacaagat tgcaattaag tttgcgaaac gactctatac
    18121 cacttttgaa gatacgctaa aatacgtgcc acacgaaaaa tcagatttcg taggggcaac
    18181 gattcgtgaa gatttaaaac acggtcatca acaaaatggc tatgcattga caggcttcac
    18241 acctaataaa aagatattac tcgtgatggg tggcagtatg ggaagtttga aaattaatga
    18301 agccattcgt cgtcatttag atgaattact gcaaacgtat caaattattc atctgactgg
    18361 gaaaggtctt gtcgcttcaa atattaatca agatggctac gtgcaatatg agttcgttaa
    18421 agaagaatta actgacttat tagcgattac agataccgtc gtgtcaagag cgggtgcaaa
    18481 tgcgatatat gagtttttaa cattacgtct tcctatgtta cttatcccac ttggtctcga
    18541 tcaatcacgt ggtgaccaaa tcgataacgc gaaatacttt gaaaaacaag gatacgcgac
    18601 gatgttagat gaatcggaat tatcgagtga cacgttatta cttgcattaa ccgaacttga
    18661 aaaaaatcga catcagtaca ttcaaaatat ggaaagtttt acagaaagct atacgcgtca
    18721 tgatttactc gaaaaaatca ttcaagacgc acttcaattg gaggttggcg catgacatat
    18781 tggaaaaaga tttctttgtt aatagtcttc acattaatat tttcaatgat tgcgatgttt
    18841 catgaatcac gtctcggtaa atggattgat aatgaagtat ataatttgat ttatgcgtca
    18901 gaaagcttta tttcaacagc aatctttttc ggtgccacgc aaattggtga ggtatgggct
    18961 atgattgcat tatcactcgt catggttgca ttgttgatgc tctatcgcta taaaattgag
    19021 gcgctctttt tcgcattaac gatgctgtta tcaggggtat cgaaccctat tttgaaaaat
    19081 atttttgaca gagaacgtcc aactttatta cgcttaattg atatttcagg gttcagcttt
    19141 ccaagtggtc atgcgatggg atcaactgcc tttttcggta gtgtgattta cgtcgcacac
    19201 cgtattttaa aaggaaaagc aaaaagcgtg gcgatgacat taagtgtgtt aatgatcgtt
    19261 ctcatttcga gctcacgcgt ctatcttggc gtacattacc caacagatat catggctggt
    19321 attgtcggag ggctcttctg tatcgtgctg acacaactca tcctacgcca cccattagcc
    19381 caaactaaaa tctaatcaat aaagaactgt ctttcatgag gagagacagt tctttttata
    19441 tgcgatggtt atcatagcat ctaatttctt tcactaagtt ccatcttttc aagcaatagc
    19501 atgagattac tgtgaaaaat atgactgtct tcaagcatta tcttttttaa aacacagata
    19561 cccatgtgta caaaagagag gacgtgacat caagcttttt ctcttctttc tcactcaaaa
    19621 acatgcacaa taaaagccgc cgcatttact gcgacggctt ttatttaacg tttaatatca
    19681 acgaatttta tacgggcata taaaagggga tattattgaa aatgactcaa tcataagaac
    19741 gaattgtagt ggggggtcgt tgggattgat aatcattttc aattacatta taacgcattg
    19801 agaatcattg tcaattaaaa acgcaaattt ttttaaaaaa ctttcgcgtt cctcattttt
    19861 agcatatgat tagggggaga ggtggctaat atgaaaaaag tacttattat tgaagacgag
    19921 caaaatttag cacgtttcat tgaacttgaa tttaagcatg aaaattatga agtagaagtg
    19981 aaatatgacg gtgtatctgg tttgaaccgc gcattacagc atgactttga tttaatactc
    20041 ttagatttga tgttaccaga aatggacggc ttagaagtct gtaaaagatt aagaacacaa
    20101 aaagatacac cgattattat gattactgcg aaaggtgaaa tatacgataa agtcactgga
    20161 ttagatatcg gtgcagatga ttacatcgtt aaaccatttg aaattgaaga actattagct
    20221 agaagtcgcg cactcattcg tcgttattca gacgaaaacg tgtccgatac aaatgttgtg
    20281 gaaattgatg gtattaaaat tgataagagt gcttttcatg tcacttatca aagcgaaaaa
    20341 ctggaattaa cgaaaacgga atttgattta ttattactcc tcgctgaaaa taaaaatcgc
    20401 gtccttcacc gtgaacaaat tttagatcac gtctggggat atgaatctga agtcgaaacg
    20461 aatgtggttg atgtgtatat ccgttattta cgaaataagt taaagcgcat tgataaacaa
    20521 aaattaattg aaactgtgcg tggtgtcggc tatgtgattc gtcaatgaaa caatcaacgc
    20581 tcaagacaaa gtggactttt gtaacgacac tcattacatt tcttattatt ttcatctttt
    20641 gtttgctcat catttatgcc atcagcagct tattaaagca aaatgaattt gataaagcag
    20701 aaagaagcgc tgatgatcta tacaatttac ttgaaacgaa accgatgaag aatattactg
    20761 cattagaatt cagctccgta cttgataact atcaaaaagt aattttatac aataagagcg
    20821 gcaaaaaaat atttgaaaat gtcagtacaa cgaatgtgaa attcacacca ccgtttcaag
    20881 cttatgatac acgtaatatt aaaattttgc gcacagataa aggctcattc atcatcgtat
    20941 cgacaccgat taatacgcct tattttaaag gacacgcaac cattgtccat tcattaaaag
    21001 agtacgatga tttattaaac ttcataacgt atctcgccct aacatttgga ctcattgcat
    21061 tatttgtaac cgcatcactc agttatttct tttcatctca aattactcaa ccgattaata
    21121 ttattactga aaagatgaca caaattcggc gtaatgggtt ccaagaaaaa cttgaagtcc
    21181 caaccaatta tgaagaaaca gatgcgctca tcgatacttt taacagtatg atgatgaaac
    21241 tcgagaattc atttaaccaa caacgtcaat ttgtagaaga tgcttcacac gaattacgta
    21301 caccacttca aattatccaa ggacacttaa atttagttca gcgctggggt aaaaaggatc
    21361 ctgacatttt agaagagtct ctgaatatct ccatcgagga aatgaatcgg attacgaaac
    21421 tcgttgaaga attactgcta ctcactaaag atgatacaag gtcaactgaa aatcaaactg
    21481 aaaaagtcga tgtgaataat gaaattagaa gtcgtcttca tgcactacaa caaattcatc
    21541 cagattatca actcgacttt catacgagtc aagactttat atacctagag attaactcat
    21601 ttcacttaga acaaattttg cttatttttc ttgataacgc gattaaatat gacacacaaa
    21661 ataagcatat ttctattgaa acgaaactca tcagcaatca agtcgtgatt aaaattacag
    21721 accgtggctt aggtatccct caagcagatc aagaacacat ctttgaccgc ttctatcgtg
    21781 tagacaaatc acgctcccgt cagcaaggcg gaaacggttt aggactctct attgcccata
    21841 aaatggtgac attatatcat ggtcgaattt cagtcgagag cgaagtcggg tattttacaa
    21901 catttactat cagttttgat tcgtgcggat gagtacaatt atctggcttt ttgcctttaa
    21961 atgttcacat tttaatgcta ttattgacct gtaagcgttt ttattttttt ctgtggaggg
    22021 tggattatga agaacgataa acaggtgaca gaggcacctg taaacttcgg cacaaattta
    22081 ggactcattt tagaattata tgatcaattt ttagaagatc ctagttcagt gactgaagat
    22141 ttacaagttc tctttagtac aattaaagat ggtgaagcga caacatcatc aacaaccgaa
    22201 tcaagctcag gagatagtac gatcaagcgt gtgatgcgtt taatcgataa tattagacaa
    22261 tacggtcatt tagaagctga tatttatcca gtgaatgtac cagaacgtac aaatattcct
    22321 aaattaaagc cagaagactt taacttagat caagcaactt tagaaaacat ttcagctgaa
    22381 atcgtctctg atcattttaa agacatttac gataatgcct atgaagctat tgaacgtatg
    22441 gaagaacgtt ataaggggcc aattgctttc gaatatacac atattaataa taataaagaa
    22501 cgtatatggc taaaacgtcg tattgaaaca ccatataaag caagccttaa taaagaagaa
    22561 aaaatcaatc ttttcaaact tctggcacac gttgaaggct ttgagaaata ccttcacaag
    22621 aactttgtag gtgcaaaaag attttcaatc caaggcgtca ataccctcgt acctatgatc
    22681 actcaaacaa ttaaacgtgc tgctgaagaa gaaatttcaa acattcaaat cggtatggca
    22741 caccgtggac gtttaaatgt tttaacgcac gtgctacaaa agccatatga gatgatgctt
    22801 tcagaattta tgcatacaga tccaatgaaa tttttaccag aagatggtag cttatctatc
    22861 acttcaggtt ggacaggtga cgttaaatat cacttaggtg gcgttaaaac gatcaataac
    22921 catggtattg aacaaaaaat cacgttagca aataacccaa gtcatcttga agtcgttgcg
    22981 ccagtagtga caggccgtac gagagcggca caagaccaaa cggactatgc gggtaaagtg
    23041 caaactgatt tttcaaatgc aatgccgatt atcgttcatg gtgatgctgc ataccctggt
    23101 caaggtgtga actttgaaac aatgaacctt ggtaatttag atgggttctc aacaggtggt
    23161 acattgcaca ttattacgaa taaccgtatc ggattcacaa cagatccaga agacggacgt
    23221 tcaacaacgt atgcgacaga tgtggctaaa gggtatgatg taccgattat gcatgtgaat
    23281 gctgacaatg ttgaagcaac tattgaagcg attgatattg caatggaatt tagaaaagca
    23341 ttcaataaag atgtcgtgat tgacttagtt ggttaccgtc gtttcggtca taatgaaatg
    23401 gacgagccta cattaacgaa cccattacca tataaacaaa ttcaaaaaca tgatacgtct
    23461 gaagtgattt atggtaaaca acttatagac gaaggcatta tgagccaaga tgaaatggac
    23521 gaagtgatgg aaaacgttca aaaagaaatg cgatcagcgc atgacaaaat cgataaaaac
    23581 gataaaaatg acaatacgga tatgagcatt cctgatagta tcgcacaacc tttaaaaagt
    23641 aatgagtctg aactgtcata tgatcgctta aaagaaatta acgatgcaat gtttaactat
    23701 ccagaaggtt tcaatgtttt caaaaaatta aatcgtattc ttgaacaacg taagcaacca
    23761 tttgaaagtg aagaaggttt agtggattgg gcacatgccg aacagctagc atttgcgaca
    23821 gtcatgcaag aagggacacc aattcgtatg acaggtcaag attctgaacg tggtacattt
    23881 agccatcgtc atgcagtgtt acacgaccaa gaaaatggcg acacatttac gccattacaa
    23941 catgtacctg atcaaaaagc gacgttcgac attcataact ctccattatc agaagctgca
    24001 gttgtaggct ttgaatatgg ttataatgtt caaaatccgt catcatttaa catttgggaa
    24061 gcacagtttg gtgactttgc gaatatggcg caaatgtatt ttgacaactt cattttctct
    24121 ggtaatgcaa aatggggcga atcatcaggt ttaacgttct tattgccaca ttcatttgaa
    24181 ggacaaggac ctgaacattc atcagcacgt ttagagcgtt tcttacaatt ggcagctgaa
    24241 aacaacatga ctatttgtaa cttatcaagc tcagccaact acttccactt attgcgtgcc
    24301 caagcggcaa gcctaggaac tgacgcaatg agaccattag ttgtcatgtc tccaaaaggt
    24361 ttattacgta ataaaacagt cgcacaaccg atcagtgcat ttacatctgg tggttttgaa
    24421 ccaatactcc cagaagcaca tgacgctaaa aagattaaaa aagtcattct cgcatcaggc
    24481 aaaatgttta tcgacttgaa agaaaaatta gccaattcac caaacgaagc gattttactt
    24541 atagctgttg aacgactcta tcctttccca gaagaagaaa ttcgatcagt tcttgaaaca
    24601 cttccaaacc ttaaaacagt cgcatgggtt caagaagagc cgcaaaacca aggggcatgg
    24661 cattatgctt atccaatgtt gagagacatc attggtgatc aatacgaatt gacttatcac
    24721 ggtagaaaac atagagctgc acctgccgag ggtgatggtg aaattcataa acttgttcaa
    24781 aataatatca ttgaaaatag cttaaatatt tagggggcat aggaaaaatg gcagaggtaa
    24841 aagttccaga attagcagaa tcgattacag aaggtaccat tgcagaatgg ttaaaacaag
    24901 taggtgacac tgttgaaaaa ggtgaagcca tccttgaatt agaaacagac aaagtgaatg
    24961 tcgaagtcgt ttctgaagaa gaaggtacaa ttcaagagtt acttgctgaa gaaggcgaca
    25021 cagtagaagt cggccaagcc attgcaatag tgggtgaagg tggcgctgct acatcttcaa
    25081 gtgatgattc aaaaactgac tcaaaagacg cgtcaaataa atcagaacaa aaagcgtcag
    25141 acaaacaaga gcagaaagaa gaaaaatcat cttctgacaa agaaagccaa agcagtcctt
    25201 caaacgaacg cattaatgca acaccttcag cacgtcgcgc ggcacgtgaa aaaggcatta
    25261 gcttaagcga agtgagtggc aaagcaaatg atgtcgttcg taaagaagat gttgaacgcg
    25321 gctcacaaca aaaatcaaca ggtgctgctc aatctaaaga aaaagaagct gctacaccac
    25381 aagcacctaa aacaccatca aaaccagtaa ttcgtgaaaa aatgagtcgt agaaaacaaa
    25441 ctgcagctaa aaaattatta gaagtaagca ataacactgc aatgttaacg acattcaatg
    25501 aagtagacat gacgaacgtg atggcgctcc gaaaacgtaa aaaagacaaa ttcatggaag
    25561 atcatgacgg cacgaaactt ggcttcatgt cattcttcac aaaagcagcg gttgccgcat
    25621 tgaagcgtta ccctgaagtg aacgctgaaa tcgatggcga ctacatggtt acaaaacaat
    25681 actacgatat cggtattgcc gtgtcgacac caggcggttt actcgtacca aacgttagag
    25741 attgcgataa gaagaacttt gctgaaattg agcaagaaat tgccaactta gcgtcaaaag
    25801 cacgtgataa caaattgaca ctggatgaca tgatgaacgg ctcattcaca attacaaatg
    25861 gtggtatttt cggttcaatg atgtcaacac cgattatcaa tggtagtcaa gctgcaattt
    25921 taggtatgca ctctattatt acgagaccgg ttgcgattga tcaagatacg attgaaaacc
    25981 gcccaatgat gtacatcgca ttaagttatg accatagaat tatcgacgga aaagaagccg
    26041 taagtttctt gaagatgatt aaagagttaa ttgaaaaccc agaagattta ttattagaat
    26101 cttaatcgtt tagggtttag agagaaatct gtaataggtt tctctctttt ttataatctc
    26161 tagtcgattg attaaattgg gctatgcttt ttgagtgaac taaaaacgta gaaatcatct
    26221 aaattttata acacctcatg ccatttggga gcatttatat taatatacaa caaaatatta
    26281 atccatcgaa aggagtgtta cggatgaatc gtgtgttcat atatatttta attgtgattg
    26341 gtattgcgaa tatcatcgcg caattcggtt tcattatcgc aagtctgttt ggttttatgc
    26401 attattatcc gatttttcag ttgcttggta cctctttatt agtgctattt gcgatagatc
    26461 atttgaagtt caatcactct aaatcggtat atttgatttt gggtttagca ttgatcactt
    26521 cgggagtgct aataaaatta taaaggcatc aactctgatt cgatagttca tttaagttat
    26581 aatgaatgtg aagaggagtg agatgaaatg gcgcaatttc gcagtgtgac attgggcact
    26641 aaaagtatag acaaaacgat tgatttattc cataatatgt taggtatggc ctacgataga
    26701 aagggcaatc gtgttcaatt tggagatgca caacttagcc ctggtacgcg ccttcaattt
    26761 gttgaaatag cagaatcgat taaaccgaag catcaacatt ttgaaagtgt ggcattgcgt
    26821 acaccgagta accatggtat tgacgaatat atggccattt tacaagaaca ccaatatgct
    26881 tttgaaggac ctgcacagtt gaatggtcat caaaggctac aattttctga tgccaatgac
    26941 caacatttca acattttttc agacgaagcg aatgtcggtg ttggattggg aatgcctagt
    27001 gaagagagtt ctgtgagtcc gctacatcaa gtacaaggac tcggtccagt gatgttgcgt
    27061 acacaagaac ctgctgtgac gatgacgtta ttaagtaatt tgtttggctt taaacctatt
    27121 gctgaataca cgtcacctca aacaaatcaa tctgtcgtag ttatggaagg tgagggcggt
    27181 gggttaggtg ctgaagttca tatttatcaa tcagacacta tacaaattcc accttatggc
    27241 atcgttgacc aactcgaatt cacagcacaa cacgaagccg aatttaatga tgcgttgaat
    27301 caactgacac atcacgatat cccttttcaa caacttaaaa atgaccaaca tgagacgcgt
    27361 tcgattcgcg tcaatgatat gagtggtttg gcattgattt taacattagc gcatgcaacg
    27421 aaaggaagtt aaactatgtt acatgaaact tggaaaacgc gtacaccact aaaaaaggtg
    27481 aaagtcgttc atacagatgc aaagaaattt actgtcagcg atatgttaac tgttggtgaa
    27541 acatatgatg tcgttaacga aactgaagaa tactatcaaa ttattgataa ctcaggtcac
    27601 gttggcggtt attacaaaac ttattttgaa gaagtataag tatttcttgc gttatagcga
    27661 tttagaattt aaaaaagcgg gggtatctcg gtactcacgt cttttttcat gcacttaaat
    27721 agaaaggaaa atgacaatgg ttaaggaatt tactggttat atcaactccg atgagactgt
    27781 tctaggagat gcaatcaagt tattcgaatt gaataaaaat attttactaa aagggccaac
    27841 tgggtcaggg aaaacgagat tagctgaaac gttaagcgaa atgactgaat taccgatgca
    27901 tcaaattaac tgttctgttg atttagatgc agaaagttta ctcggcttta aaacgattaa
    27961 aacatcagat gaaggccatc aagagattgt ttttatcgat ggtccagtta ttcgtgcgat
    28021 gcgtgaaggt catattttat acatcgacga aatcaatatg gcgaaaccag aaacgttacc
    28081 aattttaaat ggtgtgttgg actatcgtcg tcaattgacc aacccattta cgggtgaagt
    28141 tatcaaagcg gcgcctggtt ttaaagtcat agcagccatt aatgaaggct atgtcgggac
    28201 actaccgatg aatgaggcgt taaaaaaccg tttcgtcgtg attaatgtaa attatattga
    28261 tggccaaact ttacatgatg tcatcaaagc acaaagttta ttgcaagacg attcactaat
    28321 tgatcaaatt attaaattta atgctgattt acgtacgatg acacaacaag gtcaattgtc
    28381 tgaagaagca gcaagtattc gtgcattaat cgatatgagc gatttagcga ctgtgatgcc
    28441 gattgaacgc gcgattcaac gtagtatcat tgataaatta gaagatgaac gcgagcaaca
    28501 agcgataatg aatgcggtag aacttaactt ttagaaggtg atattatgag cgatcgcttt
    28561 atcatgttta acgacgaaca actcgatgcc atgaaaatga tgatgttaca agatttagca
    28621 cgcctattgt tgaagaatcc gaatacacaa gtcaaagtcc ataaatttcc atattatgat
    28681 gccatcaatg atgaggttat ttgtagttct ttttgggccc atcgacctga atatgttgaa
    28741 cataccggac tgaagacaga cgttttactg gcgacttata gctattttca tatggatcca
    28801 caaattgtca ataaagtcgt ggcgaatgag gagggattca atcatccgaa actctatcgt
    28861 caacttttta agatgatgga agagatgcgt attttaaatt taattgaacg cgaacggcca
    28921 cgtacacaaa aattgatcca acttcgtaag caaacacgtc agcaatacag tgcatcacaa
    28981 atgaacgtgt atcaaacgaa aacattattt acagatttgt tctttttaaa tttagaatat
    29041 tcatttttac gagatgattt ttataccatc ccgcatattc atcctgattt tcagccgaca
    29101 ctcgaattca tttatcaata tttgccggat gcgtttcaat tacagtcaag cgaagaaaca
    29161 atgtatttaa cgcaacggat tatgtatcaa gtggatgact ggttagacga agatatgtta
    29221 aacgagtatt atcatatccc gcgtcacatc tatgaagcat tatgccagtt tacacttgaa
    29281 gatttgaaac gtgtcgatac cgcaaatacg gatcagcata acggagagaa agaggacgat
    29341 gtcgaaactg aaaaaataga atctaaaaat atcgatagta aatctgccgg tggtgcttat
    29401 ctcgaaatgg aacttcatga aggtgaaaac agtgatgtgc taggtgatga tagtgcacgt
    29461 gaaggtgaca gcactgacga catgacagac atgatgagta aaaaggggaa aggttcaaat
    29521 gatacgttag atgatcaaga aggtggcgaa caagggcctt caaacgcatt actgagcctt
    29581 aaagggatta accaatatgt agatattaag tggcatgtac cagatatttt gccagaatat
    29641 attgaaagtt atcgtcaagt tcaaacatcg gtccaatttg aaatcaaaga ccttattcaa
    29701 attattaaaa agacaatcga tcgtgaatat caagacgtgc gtgcgaattt aacgaaaggg
    29761 cgtttgcagc gtaatttggt caattggttt atagatgatc agtataaatt attttataaa
    29821 aaagctgacc aaagccgaac ttttgacgct acttttacgt tattaatcga cgcatcagcg
    29881 agtatgcacg acaaaatgga tgaaaccatt aaaggcgttg tattgtttca tgaaacattg
    29941 aaagcactca atgtaaagca tgaaatactt gcttttaatg aagatgcttt tgatgcagat
    30001 gcacaatatc aaccgaatat cattgacgag attattaatt accatcagtc aactttcaat
    30061 accgaagcac cgagaattat gtcactcaca cctcaagacg ataatcgtga tggggtcgca
    30121 attcgggtgg caagtgatcg tttattgtct cgttcagaac aacagcgttt tcttattgtc
    30181 ttttcggatg gtgaaccttc tgcgtttaac tatagtcaag acggcatttt agatacgtat
    30241 gaggctgttg aaaactcacg taaactcggc atcgaagtgt tcaatgtctt tttaagccaa
    30301 gaatccatta ctgaatcaat cgaacaaacg atccataaca tttatggaca atatgccatc
    30361 tttgttgaag gtgtcgaaca tttgccaagc ttactttcac cattactgaa aaagttatta
    30421 ttgaagtcat tttagtcttt tttttgccta ttatgtaaca acaattttca aattttcaga
    30481 aatt
//
LOCUS       DANHOL010000010        29675 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.010, whole genome shotgun sequence.
ACCESSION   DANHOL010000010 DANHOL010000000
VERSION     DANHOL010000010.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 29675)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29675)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29675
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.010"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            <1..1602
                     /locus_tag="PTC08_000304"
     CDS             <1..1602
                     /locus_tag="PTC08_000304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing protein"
                     /protein_id="HDK5681838.1"
                     /translation="KTVEYEKKSLLKDAEQILAFYKAGNNQHIQELTNHYHSNIKIIE
                     NDQTTEFKGERKLSIAERQDSLLRQLNTRNPIYQLDGKQGYYWFGHQQGETTILITGH
                     FDMVYELQLQFWKYLILVGMIILALIYFTVRYINRTYIQPINEVSYAASLLTEGNFHV
                     RLPESSVKELRELYVTINVLARRLEQLNSEQKIQRNRLVTTLENIPSAILMIDKNGKI
                     VIANKTFYEVFNASTNVENQDYARYLHPTIKQLVVEGFRTEKAMYKQVEISINHIHQK
                     FFDTSCVPILSRTKKSLQGMVIVLHDITQLKKLENLRSEFVANVSHELKTPITSMKGF
                     TETLIDGAKNDEASLDLFLNIILKESNRIQSLVEDLLDLSKIEQNTTLEKHLIDLSDV
                     AKSSFSVIQPLANEKSIQLIDQIEPNVTAMADENKISQVIVNLMTNAVNYSPENRTVT
                     LAVYRENQHPVIEVIDQGIGIGEKEKYRIFERFYRVDKARSRDSGGTGLGLSITKHII
                     EAYQGNIEVASELGKGSRFKVVLPE"
     gene            2335..4962
                     /gene="polA"
                     /locus_tag="PTC08_000305"
     CDS             2335..4962
                     /gene="polA"
                     /locus_tag="PTC08_000305"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HDK5681839.1"
                     /translation="MDKLILIDGNSLSFRAFYALPLLKNKAGIHTNAVYGFARLLEKI
                     IKEEQPTHFLVAFDAGKTTFRHETYQDYKGGRQKTPPELSEQFPYIRQLIDAYQIQRY
                     ELENYEADDIIGTLSREADQAGMQTIIITGDRDLTQLATDQVTIYYTKKGVTDVDHYT
                     PQFIAEKYNGLKPSQIIDLKGLMGDSSDNIPGVAGVGEKTAMKLLNQFGTVEGVYDHI
                     EEVSGKKLKEKLENSRDDALMSKTLATINCDSPITVSLEDTRLPQKMDESAKIELFKS
                     LEFRQLLDGMDVEADNATASRDFVPTTNMSKVDFTQLSEAAIHVEVAGPNYLKDELLK
                     FGLYDGEQYVVIPFDKVNEYPELVAWLEDETTQKWVHDAKKTYIAMKRSDIAIENVVF
                     DTMLASYIIDPSRTIEDVHSVMTHFDQTFVQDDVSVYGKGKSFHIPEDGILDKHIASI
                     LDAIHVVQPQMMTILEAHEQTSLLSEIELPLALILSEMEYIGIHTDIDTLKEMETVIQ
                     TELDQLIEQIHEQAGEKFNINSPKQLGVILFEKLELPVIKKTKTGYSTAVDVLEKLQN
                     AHPIIDNILTYRTLSKLQSTYVEGLQKVIWDDGRIHTRFNQTLAQTGRLSSVDPNLQN
                     IPIRLEEGRKIRKAFKSTHEDYVILAADYSQIELRVLAHITGDPTLQQAFNDNEDVHT
                     TTAMKVFNVAADEVTSLMRRQAKAVNFGIVYGISDYGLSQSLGITRKEAQRFIDDYLN
                     HFPGVKDYMDNIVQDAKQQGYVETLLKRRRYIPDITSRNFNLRGFAERTAMNSPIQGS
                     AADIIKLAMVQFHREVQKTSFKAQLLLQVHDELIFEVPKDEVDEFGKFVEEIMAHALQ
                     LDVPLSVESDYGKTWYDAK"
     gene            4982..5854
                     /gene="mutM"
                     /locus_tag="PTC08_000306"
     CDS             4982..5854
                     /gene="mutM"
                     /locus_tag="PTC08_000306"
                     /EC_number="3.2.2.23"
                     /EC_number="4.2.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional DNA-formamidopyrimidine
                     glycosylase/DNA-(apurinic or apyrimidinic site) lyase"
                     /protein_id="HDK5681840.1"
                     /translation="MPELPEVEHVKRGITPHIMHQKVIDVTFSEPVKRGKLEGKETII
                     KGIDLDAFVKYTVGFEIADVQRRSKYILFRIENGNIERILISHLGMAGAFFVVQSLDD
                     IAIPNFRKHWQVVFHLENGIKLVYSDIRRFGEIRNVESLEAYPSILEIAPEPFEQEAL
                     AYYLAKSDEKKYLNKAIKPFILDHRVISGCGNIYACEALFDAQIHPEKKVKDLSIAEK
                     TKLFNSVVKVLEMGILNGGTSVADYVHADGQRGTMQDHLKVYKQKRCATCETAIETVI
                     ISGRNTHFCPNCQS"
     gene            5868..6491
                     /locus_tag="PTC08_000307"
     CDS             5868..6491
                     /locus_tag="PTC08_000307"
                     /EC_number="2.7.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HDK5681841.1"
                     /translation="MPKVIGLTGGIATGKSTVAELLAIHGFKIVDADVAARKAVAKGT
                     EGLKKVQALFGDEAINEDGEMNRTFVGQQVFYDDEKRKQLNAIVHPIVGKMMNQERDQ
                     YLAEGHNVIMDIPLLFENHLEATVDEVWLVYASEPIQLDRLMARNDLSIEDAKARIYS
                     QISIDKKSRMADVVIDNLGSKLELKQNLEQILVDKGFLEAYHSDSEE"
     gene            6698..7714
                     /locus_tag="PTC08_000308"
     CDS             6698..7714
                     /locus_tag="PTC08_000308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HDK5681842.1"
                     /translation="MTTKIAINGLGRIGRMVLRVALNREDVEVVAINASYPPETIAHL
                     IKYDTTHGRFNQAVEPIEDGIQVNGKKIKLVSDRNPENLPWAALDIDIVVEATGKFNH
                     GDKADAHIRAGAKKVILTGPSKGGDVQTIVKGVNDQDIDTERYDIFSNASCTTNCLAP
                     IAKLLNDRFGIENGLMTTVHAVTNDQNNLDNPHKDLRRARAAFESIIPTSTGAAKALA
                     LVLPELEGKMHGMALRVPTKNVSLVDLVVDLKQSVTKEEVNQLFKDNDLNGVVAISDE
                     PLVSDDFTTDAHSAIVDTPSTIVMGDRKVKVLAWYDNEWGYSTRVVDVLQQIAAQIPS
                     TVAQ"
     gene            7911..8378
                     /gene="nrdR"
                     /locus_tag="PTC08_000309"
     CDS             7911..8378
                     /gene="nrdR"
                     /locus_tag="PTC08_000309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor NrdR"
                     /protein_id="HDK5681843.1"
                     /translation="MKCPKCNHTQSRVVDSRHADDMNAIRRRRECDNCGTRFTTFEHI
                     EMSPLIVVKKDGTREQFNREKILNGLVRSCEKRPVRFQQLEEITNQVEWKLREEGIAE
                     VSSRDIGEYVMNLLMHVDQVSYVRFASVYREFKDVDQLLQSMQGILKENKRSE"
     gene            8382..9755
                     /locus_tag="PTC08_000310"
     CDS             8382..9755
                     /locus_tag="PTC08_000310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaD domain protein"
                     /protein_id="HDK5681844.1"
                     /translation="MNHFMYQNQLSPHDGFIVMRPFQYHAVHYDILNRLFTPLIGAEA
                     IGVYQFLNQFESATFDQGFTHYTIMSELKLSLGRFREFLDLLEGIGLLKTFVRQSENT
                     TQFVYELIPPPTAERFFNDPMLSIYFYEAVGQERYHTLKNHFMPTQLDLAGFSNVTKK
                     FTDVFKVPKKQAATSDVALKASQYQGVDLTDVTFDFELLADMLQTHYVSQTILSEPTK
                     SLIVQLATLYRLSPDVMKTIILKSLNADQSLSVKDLRKQAQSYYLMEHQQQLPSLQPQ
                     VTVTASEQTSEAQEETVSNWDEWFALMDQTSPIVMLTEYGGSEPPRYQKDMVEELVQR
                     EGFNFGVINILLQYVMQKTDNNLPEKYVYSVASTWKKSGVTDARSAYEKAMEIQKNQE
                     KSKQKRMESYSQNTNGPFYNKKEKQPRWVTHPEEYEQKEEDQEALEKDRAAFLKRLKQ
                     KRRAGED"
     gene            9755..10678
                     /gene="dnaI"
                     /locus_tag="PTC08_000311"
     CDS             9755..10678
                     /gene="dnaI"
                     /locus_tag="PTC08_000311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016425307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein DnaI"
                     /protein_id="HDK5681845.1"
                     /translation="MKSFNSIIGGNNAFEQKIQQIKKQVLADPDVKAFLAAHQSEVTN
                     RMIEEDLNILQEYKDQQKRYDGTHTYENCPNFVKGHIPELYIDQQHIKIRYKPCPCKI
                     RHDEEQNAKSMITSFHMHPDTLNAKIKDIYMTRRNRLDLAMQLDDLIDAIIEKRSVKG
                     FYLYGEFGTGKSFILGAIANELKNNRVPSMIIYVPEFIRTLKNGFKDGTTAKRIEQVR
                     EARVLFLDDLGAEDMTPWVRDEVLGPILHYRMIQELPTFFSSNMNLDELETHLADTKN
                     GVDRMKAKRIMERVKTLSTPYLLEGENYRKH"
     gene            10996..12933
                     /gene="thrS"
                     /locus_tag="PTC08_000312"
     CDS             10996..12933
                     /gene="thrS"
                     /locus_tag="PTC08_000312"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HDK5681846.1"
                     /translation="MAEIKVQFPDGNEKAFEKGTTTEEIAQSISPGLRKKAVAGKFNQ
                     QLVDLTRPLEEDGAIEIITPGSDEALEVLRHSTAHLMAQALKRLYGDVHFGVGPVIDG
                     GFYYDFDMEEKVSSDDFEKIEKTMKQIIEENHKVERQVVSRDEAKAFFANDPYKLELI
                     EAIPQDEQVTLYSQGEFTDLCRGVHVPSTSKIKAFKLLSTAGAYWRGDSNNKMLQRIY
                     GTAFFDKKDLKAHLQLLEERKERDHRRIGKEMELFTNNQLVGAGLPLWLPNGATIRRE
                     IERYIVDKEISLGYDHVYTPVMANVDLYKTSGHWDHYQEDMFPPMQLDADEAMVLRPM
                     NCPHHMMIYANKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDAHIFVRP
                     DQIKEEFKRVVQMILDVYEDFGFEDYKFRLSYRDKADKEKYYDDDDMWNTAEAMLKEA
                     VDEMNLPYEEAIGEAAFYGPKLDVQVKTAMGKEETLSTAQLDFLLPKKFELTYIGKDG
                     EHHRPVVIHRGVVSTMERFVAFLTEETKGAFPTWLAPQQVEIIPVNNDLHYDYARQIH
                     DELKSQGVRVHIDDRNEKMGYKIREAQMKKIPYQLVVGDKELENNEVNVRQYGSKDQK
                     TVEKDTFIWDLVDEIRLKKQR"
     gene            13301..14809
                     /locus_tag="PTC08_000313"
     CDS             13301..14809
                     /locus_tag="PTC08_000313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HDK5681847.1"
                     /translation="MSNEKTENQHAVQRHLKDRHISMIAIGGAIGTGLFMTSGGAIHD
                     AGPLGALLGYAIIGVMVFFLMTSLGEMATYLPVTGSFSTYATRFVDPSLGFALGWNYW
                     FNWVITVAADVTIAAQVIQYWAPLQFLPAWAWSCIFMVIIFSLNALSVKVYGESEYWF
                     AFIKVATVIVFIIVGLLTILGIMGGQAVGFDTFTTGDAPILGDGFGGSLLVVFGVFLV
                     AGFSFQGTELVGITAGESENPQRAVPKAIKQVFWRILLFYILAIFIIGMLIPYNSSAL
                     MGGGDDIATSPFTLVFKNAGLAFAASFMNAVILTSVLSAGNSGMYASTRMLYSMGKDG
                     LASKAFSRTNKNGTPILSMLSTALIVVLIFVLQHVSGDAYEYIVAASGLTGFIAWVGI
                     AVSHYRFRKAFAAQNYDVQKLKYQAKWFPFGPILAAVLCIIVIIGQDVDFIQTGDFDI
                     NRFLITYMGIPVFLAFFIYHKVRYKTKLIPLKDVNLDPNVETVEKNFQKNID"
     gene            14826..14963
                     /locus_tag="PTC08_000314"
     CDS             14826..14963
                     /locus_tag="PTC08_000314"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5681848.1"
                     /translation="MIVSVEYETDQVEASRFSPVATQQAVGRLTIKHVVYVHVDVRSG
                     G"
     misc_feature    14851..14987
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00558"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="ribosomal protein L20 leader region; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /db_xref="RFAM:RF00558"
     gene            15012..15539
                     /gene="infC"
                     /locus_tag="PTC08_000315"
     CDS             15012..15539
                     /gene="infC"
                     /locus_tag="PTC08_000315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HDK5681849.1"
                     /translation="MSTIAKDQTQVNEKIRAKELRVIGQNGDQIGLKSKNEALEMADR
                     LGLDVVVVAPNAKPPVARIMDYGKYKFEQQKKEKEMKKKQKIINVKEIRLSPTIEEHD
                     FNTKLKNGRKFLTKGDKVKVSIRFRGRAITHKEIGQRVLERYAEACQDLATIEQKPKM
                     EGRQMFLMLAPINEK"
     gene            15565..15765
                     /gene="rpmI"
                     /locus_tag="PTC08_000316"
     CDS             15565..15765
                     /gene="rpmI"
                     /locus_tag="PTC08_000316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001830767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L35"
                     /protein_id="HDK5681850.1"
                     /translation="MPKMKTHRGAAKRVKRTGSGQLKRSRAYTSHLFANKSTKQKRQL
                     RKASLVSKSDAKRVKQLLTYVK"
     gene            15840..16196
                     /gene="rplT"
                     /locus_tag="PTC08_000317"
     CDS             15840..16196
                     /gene="rplT"
                     /locus_tag="PTC08_000317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
                     /protein_id="HDK5681851.1"
                     /translation="MPRVKGGTVTRARRKKTIKLAKGYFGAKSTLYKVAKQQVMKSGQ
                     YAFRDRRQRKRDFRKLWITRINAAARQHDMSYSRLMNGLKQAGIDVNRKMLSEIAISD
                     EKAFAELVNQAKAALK"
     gene            16306..16917
                     /locus_tag="PTC08_000318"
     CDS             16306..16917
                     /locus_tag="PTC08_000318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HDK5681852.1"
                     /translation="MSKFDEQITVVPRRLLFEEEALAFNGFLDQSEEKGQKIYEKLSQ
                     YEVKRRGDMEEDPSFKQLISYCLIENEHDELLVYERLSGGGEARLHGNASIGVGGHMN
                     DVPEAHHIDEVIKTNASRELEEEIGVKINNQTPLEFIGFINDDHNEVGQVHIGVVFKV
                     KVKQQDVEVRETDTLKIQWQPLSQISDTSAFESWSALILEQLK"
     gene            16927..17850
                     /locus_tag="PTC08_000319"
     CDS             16927..17850
                     /locus_tag="PTC08_000319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5681853.1"
                     /translation="MSDIIPFPKLKEKLIYDITEAFDKERYEDAYDYFIAYERHFELT
                     SELALLKCDILWQLGAYLELKEEANILMMQGFPPYDTFIVYYIKSLYALEQYKAAVEM
                     VDQVLDDVVAHETRMTLLPIKNQAQSKLDERQDYMLHRLQRFTELSHYDQTQLVLTLI
                     DDRVYQYSETIAYLLVHESIVSSVQSLMLEYLRFAGYNQGITIEKDFRQIQVIPAELV
                     GIEQTAFKDRLLPAVIDALEVEIPSLVQEAYILLNTNNIALYPVNILDYGTVEMWRDA
                     YVAYFHQLMGEEVNVDSLYVEIFKLIKSLNT"
     gene            17938..19254
                     /locus_tag="PTC08_000320"
     CDS             17938..19254
                     /locus_tag="PTC08_000320"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trigger factor"
                     /protein_id="HDK5681854.1"
                     /translation="MTATWEKKEGNEGLLQVSVPAEEVDKALDQAFKKVVKQLNVPGF
                     RKGKVPRQIFEQRFGVEALYQDAVDILLPKAYSEAVQETGINPVDQPEIEVTQIEKGQ
                     PFTFDATVIVEPEVQLGDYKGLEIEKQNTEVTEDEFNKAVEQRLDAMTDMVVKEDGQV
                     EEGDTVNLDFDGYVDGEQFEGGQAEGYDLEIGSGMFIPGFEEQLVGLKVGEEKEVEVT
                     FPEEYHAEELAGKPAVFKTKINEIKAKEVPELDDELASELDSNANNVEEFKANLRQQL
                     EEQKKTDAENAQKEEAITLATDNATIDIPEAMVRTEQDRMMSEFAQRIQQQGLDLNTY
                     FQISGQSEDDLREQMKEDAELRVKTNLTLAAIADAENIEVTDEDVDKELETMSEQFNI
                     SVEDIKKTLGNTDLVKNDVRVKKVINLLVDEAKLVESTSEDNKEEA"
     gene            19827..21089
                     /gene="clpX"
                     /locus_tag="PTC08_000321"
     CDS             19827..21089
                     /gene="clpX"
                     /locus_tag="PTC08_000321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001830765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit
                     ClpX"
                     /protein_id="HDK5681855.1"
                     /translation="MFKFNDDEENLKCSFCGKDQDQVKKLVAGSGVYICNECIELCAE
                     IVEEELNQQQAEELTELPTPKEIMDQLNSYVIGQEKAKKSLAVAVYNHYKRVQQLGPK
                     DDDVELQKSNVALIGPTGSGKTLLAQTLARTLNVPFAIADATSLTEAGYVGEDVENIL
                     LRLIQAADFDIDKAEKGIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTA
                     SVPPQGGRKHPNQEFIQIDTTNILFILGGAFDGINEVIKRRLGEKVIGFASNEASNFD
                     EASLLEQIRPEDLQTYGLIPEFIGRVPIVANLETLDVEALKNILTQPKNALVKQYTKM
                     LELDDVALEFTDEALAAISEKAIERKTGARGLRSIIEEALIDIMYDIPSTENVAKVVI
                     TKETIVNETEPELYDAEGNLVNTTKTSA"
     gene            21326..21922
                     /locus_tag="PTC08_000322"
     CDS             21326..21922
                     /locus_tag="PTC08_000322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihA family ribosome biogenesis GTP-binding
                     protein"
                     /protein_id="HDK5681856.1"
                     /translation="MNINPNEVDILISAVKPEQYPELDLPEVALSGRSNVGKSTFINS
                     MIGRKNMARTSQQPGKTQTLNFFNIDNQLIFVDVPGYGYAKVSKKQREAFGKMIETYI
                     TTREALKLVIQLVDLRHPPTEDDVLMYDFLKYYDIPTLIIATKEDKIPKGKVQKHIKI
                     IKEKLELESGDQIISYSSIEKKKQDQIWAAISAFIAEE"
     gene            22077..23417
                     /locus_tag="PTC08_000323"
     CDS             22077..23417
                     /locus_tag="PTC08_000323"
                     /EC_number="1.2.1.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA reductase"
                     /protein_id="HDK5681857.1"
                     /translation="MYLIAVSVNHRTADVACREKLSFQEENLTHVHEALFETKSILEN
                     VILSTCNRTEVYAVVDQIHTGRYYIQRFLARQFNFELDDIKAMSEVKTEDEAIEHLFR
                     VTAGLDSIVLGETQILGQMRDAFFTAQAAGTTGTIFNELFKQAITFSKKAHHETDIAN
                     NTISVSYGAVELAKKMFGKMNKKQALVIGAGEMAELAVLNLKGAGVRHITVINRTLSR
                     AQALADQHGVQVGEWASLGEAIVSADIVISSTSAEQFIITKEMLEMCQSVAKSSQKVM
                     IDIAVPRDIEPVDVSHSELFIYDVDDLKGLIDANLRERQLAAEQIASRIPTEIDKHNE
                     WVRMLGVIPVIRALREKAMQIQQDTMDSITRKLPNMSERERKVISKHTKSIINQMLKD
                     PIKQAKEISDDKHADAKLALFQEIFDLEVEADYKTQAIKKKKSVLKERLLSIET"
     gene            23432..24268
                     /gene="ccsA"
                     /locus_tag="PTC08_000324"
     CDS             23432..24268
                     /gene="ccsA"
                     /locus_tag="PTC08_000324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcsA"
                     /protein_id="HDK5681858.1"
                     /translation="MEEAFFIRFHEVILLIYLVSMVCLIIDVFQKNYRLQNIGFYALG
                     IVWFCQTISLTMFIIWQKQLPLTSLIESFYVLTWLILTITFVMSVLRQSEFMIAFLNV
                     IGFVFMTIHTFHPRQFKLDGARLTALNELLFFHISLALLSYVVFAVAFVNAIIYLIQY
                     RNLKEKRFTQNFFRMSSIATLEKLVFYSSLIGVIFMFISLVLGIQWGMVSIGYDIFLD
                     LKVISSIIIFIAYSIFITLRLTRRFKQSFLMNLNIMLFLCCMINLVVVTQLSTFHQWT
                     GV"
     gene            24294..25223
                     /gene="hemC"
                     /locus_tag="PTC08_000325"
     CDS             24294..25223
                     /gene="hemC"
                     /locus_tag="PTC08_000325"
                     /EC_number="2.5.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HDK5681859.1"
                     /translation="MRKLIVGSRRSQLALTQSQQFIDRLKEVDPTLDIEIKEIVTKGD
                     QIVDRQLSKVGGKGLFVKEIQNELFNRDIDMAIHSLKDVPSELPEGLTLGCIPDRENP
                     FDAFISKNHIPLDELPDGSIIGTSSLRRGAQILAKYPNLEIKWIRGNIDTRLKKLETE
                     DYDAIILAAAGLKRMGWSDDIVTTYLDEDLLVPAIGQGALGIECRADDDELLALLAKV
                     HNEDVAACVTAERTFLKEMNGSCQVPIGGYATRKNDTEIQFTGLIMSPDGKQRFEYTF
                     SGQDPIQVGSEVSRVLKSQGADKIILALNEKEV"
     gene            25227..25904
                     /locus_tag="PTC08_000326"
     CDS             25227..25904
                     /locus_tag="PTC08_000326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HDK5681860.1"
                     /translation="MKPIIVMTQTKRYDDQRAEIVHLPFVTTEPLPFDQSVLGRHYDW
                     LVFTSQNAVTHFQPYLKLLNFNRLAVIGEKTKAFCESQGLRVDFFPADYSQEGFLDAF
                     PTQQGQHILIPSSQRARPLLQEVLQVRGFNVEKIDLYTSCFLLENVKEAKARIETGQV
                     DALTFASASAVKAFFHDDTSLNFDSYYAIGQQTARQIQDYGYSCSIADIQTLESMVTK
                     ILEERVQ"
     gene            25904..26881
                     /gene="hemB"
                     /locus_tag="PTC08_000327"
     CDS             25904..26881
                     /gene="hemB"
                     /locus_tag="PTC08_000327"
                     /EC_number="4.2.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HDK5681861.1"
                     /translation="MQFDRHRRLRSSKVMRDMVRETHVRKEDLIYPIFVVEKDDVKAE
                     IKSLPGVYQISLNLLHEELKAAYDLGIRAIMFFGIPNEKDACGTGAFIEDGIIQKATR
                     LAKSMYNDLLILADTCLCEYTDHGHCGVIDTHTHDVDNDKTLPLLVQTAVSQVKAGAD
                     IIAPSNMMDGFVAAIRQGLDEAGYYHIPIMSYGIKYASSFFGPFRDAAESAPSFGDRK
                     TYQMDPANRLEALRELESDLNEGADMMIVKPALSYLDIIRDVRNNSNVPIIAYNVSGE
                     YSMTKAAALNGWIDEEKVVMEQMISMKRAGADMIITYFAKDICQYLDQQ"
     gene            26897..28183
                     /gene="hemL"
                     /locus_tag="PTC08_000328"
     CDS             26897..28183
                     /gene="hemL"
                     /locus_tag="PTC08_000328"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HDK5681862.1"
                     /translation="MRYNESIKAFEKAEQLMPGGVNSPVRAFKSVDTPAIFMSRGEGS
                     RIYDIDGNEYIDYVLSWGPLILGHRDSKVIEAIHDVVERGTSFGASTLEENRLAELVI
                     ERVPSIEKVRMVSSGTEATLDTLRLARGYTGKNKIIKFEGNYHGHSDSLLIKAGSGVA
                     TLGLPDSPGVPEGTAKNTITVPYNDLEAVKYAFEEFGDDIAAVIVEPVSGNMGVVPPI
                     NNFLQGLRDITKENDALLIFDEVMTGFRVGYNCAQGYFNVIPDLTCLGKVIGGGLPVG
                     AFGGRKEIMDHIAPSGDIYQAGTLSGNPLAMTSGYMTLSQLTPESYDYFNELGDMLEE
                     GLTEIFAKHQVPLTVNRAGSMIGFFLNEGPVTNFKEANQSDLELFGQLYRELAEQGIF
                     LPPSQFEGMFLSTAHTKEDIEKTLHAFDVALERLGK"
     gene            28441..29523
                     /locus_tag="PTC08_000329"
     CDS             28441..29523
                     /locus_tag="PTC08_000329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AbrB family transcriptional regulator"
                     /protein_id="HDK5681863.1"
                     /translation="MAQNKMFNNLLVLVIAILFGWLLFALHIMLPWMFGPILASIFVV
                     KVLKRDVQWPLWLSELGLIMLGVQIGTSFTRSVTSDIKDDWLAIVLVSVLILLLALVV
                     SIGFRKIAHVNRETAILSVIPGALSQMIVMAEENKKADILVVSLTQTSRVIFVVLLVP
                     LISFFFKTDHSNRVTEANVQYLTDVLTIQHIVIIALGIAVVYILMKWIHFPTKMLMAP
                     IVVLVIWNFVTNLTFTLDAPIIAGAQIIYMIRVGIQIAHLTDQLKGRIAVAIAYQNVM
                     LIFGALAMVYLVQFINHASIDELFLGAAPGGMSQIVLVALDIGADVAMISSYHIFRIF
                     FILFLIAPLVSVYLKCLERNNKNDFN"
BASE COUNT         9931 a         4801 c         6309 g         8634 t
ORIGIN      
        1 aaaaccgttg aatacgagaa gaaatcgctt cttaaagatg ctgaacaaat tcttgcattt
       61 tataaagcgg gaaataatca acacattcaa gaactcacca atcattatca tagtaatatt
      121 aaaatcattg aaaatgatca aacgacggag tttaaagggg agcggaaact ttcgatagca
      181 gaacgtcaag atagtctttt gcggcaactt aacacgagaa atccgattta tcaactcgat
      241 gggaagcaag gctattattg gtttggacat caacaaggtg agacgacgat actcatcaca
      301 ggtcatttcg atatggttta tgaactccaa cttcaatttt ggaaatactt aatattagta
      361 gggatgatca ttttagcgtt gatttacttt acagtgcgtt atattaatcg aacttatatt
      421 caacctatca atgaagtgtc ctacgctgcg tcactcctta ctgaagggaa ttttcatgtc
      481 agattgcctg aaagcagtgt gaaagagttg cgcgaattgt atgtgacaat taatgtgttg
      541 gcacgacgtt tagagcagtt gaatagcgag caaaaaattc aacggaatcg tcttgtcaca
      601 acacttgaaa atattcccag tgcgatattg atgattgata aaaatggaaa aattgttatt
      661 gcgaataaga cgttttatga agttttcaat gcatcgacca atgtagaaaa tcaagattat
      721 gcgcgatatc tacatccaac aattaagcag ctcgtcgttg aagggtttcg aactgaaaaa
      781 gcgatgtaca aacaagttga aatttcaatt aaccatattc atcaaaagtt ctttgataca
      841 tcgtgtgtgc ctatcttatc gcgtacgaaa aagtcgttac aagggatggt catcgtatta
      901 catgatatta cacaattgaa gaaactggaa aacttacgta gtgaatttgt agcgaatgtg
      961 tcacacgaat tgaaaacacc gataacatcg atgaaaggat ttaccgaaac acttattgat
     1021 ggtgcgaaaa atgatgaagc ctctttagat ttgtttttaa acatcatctt aaaagaatct
     1081 aatcgcattc aatctctagt agaagattta ttagatttat cgaaaattga acagaacacg
     1141 acgttagaaa agcacttaat tgatttgtcg gatgtcgcta aatcttcatt ttcagtcatt
     1201 caaccacttg cgaatgaaaa gtcgatacaa ttgattgatc aaatagagcc aaatgtgacg
     1261 gcgatggctg acgaaaataa aatctctcaa gttatcgtga atttaatgac gaatgcagtc
     1321 aactattctc ctgaaaatcg aacggtcaca ttagcggtat atcgagaaaa tcagcatcca
     1381 gtcattgaag tgattgatca aggcatcggt ataggagaaa aagaaaagta tcgtattttt
     1441 gaaagatttt atcgtgtgga taaagcgaga agtcgtgatt caggtggcac agggttaggc
     1501 ttgtccatta cgaaacatat tatcgaagct tatcaaggga atatcgaagt ggcgtctgaa
     1561 cttggaaaag ggtcgagatt taaagttgtg ttaccagagt aatatgttca caaaacggga
     1621 acagtgataa cgtacacaca gtcgttaaaa ctgttctcgc ttttcgttat aatcggtata
     1681 gaacataaaa aacttgatgc tattgatgcc atatttttgt taaacttgcc ttccctacga
     1741 attgtgtttt tgattgccat tatggcttca ctttacgagg gagtggccct accagtcaat
     1801 tcggtttgat ttaaaagaat acttaatcga tgtcgaattg gattttggga gcagtacagt
     1861 aatcccatgc ggcacaaaga tttcaccgta ctgcctctgc aagggtgact cgacttctca
     1921 aaagcttatg cattgaaaag tcagacagtt actgagataa acagtaacca tgattaaagt
     1981 aaagaattga ttgttagcag tatgcacaca tctcctctgg cgtctcagcc ttctggacaa
     2041 tctggcatta aatatagtca catagggtaa agttatgaat tgaagaaaat caatagcatc
     2101 catttttatg tccaattaca ccttattatt cgccggtata atcatcattc atggatatga
     2161 gtccataaaa gatctagatt agaaaactta atgtcccggt cttatatcgt atcaactatg
     2221 gtacaatagg cattccattt ttgttataaa gtagaagtgt gtgttacgcg ctttatcgac
     2281 atgatacata cggattatga taaaatagat acaaatcacg atggagggaa taacgtggac
     2341 aaacttatat taattgatgg taatagttta agttttagag ctttttatgc attgccgttg
     2401 ttaaaaaata aagcagggat tcatacaaat gctgtatatg gttttgcgcg tttgttagaa
     2461 aagattatca aagaagaaca accaacgcat tttctcgtgg cattcgacgc tggaaaaacg
     2521 acctttagac atgagacgta tcaagattat aaagggggcc gtcaaaaaac gccacctgaa
     2581 ttgagtgagc agttcccata tattcgccaa ttaatagatg cctatcaaat tcaacgttat
     2641 gaacttgaaa actatgaagc agatgacatt attggaacac ttagtcgtga agcagatcaa
     2701 gcgggcatgc aaacaatcat cattacaggg gaccgagatt taacgcaact tgctacagat
     2761 caagtgacga tctattatac gaaaaaaggt gtgacggacg tcgatcatta cacaccacag
     2821 tttattgctg aaaaatataa tgggcttaaa ccgtctcaaa ttattgattt aaaaggctta
     2881 atgggtgaca gttctgacaa tattccaggt gtggcaggtg tcggtgaaaa aacagcgatg
     2941 aaattgttaa atcaatttgg aacagttgaa ggtgtttatg atcatattga ggaagtatca
     3001 ggtaaaaagc taaaagaaaa gcttgaaaat agtcgtgatg atgcgttaat gagtaaaact
     3061 ttagcgacga ttaattgtga tagtccgatt acagtatcac tcgaagacac acgtttacct
     3121 caaaaaatgg atgaaagtgc taaaatcgaa ctgttcaagt cgttagaatt ccgtcagttg
     3181 cttgatggga tggatgtcga ggcagacaac gctacggcga gtcgagattt tgtcccaacg
     3241 acaaacatgt caaaagtaga tttcactcaa ttgtcagaag cggccattca cgtagaagtt
     3301 gcgggaccaa actacctaaa agatgagttg ttaaaatttg gtttatacga tggcgaacaa
     3361 tatgtagtga ttccatttga caaggtcaat gaatatccag agttagtggc ttggctagaa
     3421 gatgaaacga cgcaaaaatg ggtacatgat gcgaagaaaa cgtacattgc gatgaaacgt
     3481 tcagacatcg ccattgaaaa tgtcgttttt gatacaatgt tagcgagcta tattatcgat
     3541 ccgtcacgta cgattgaaga tgtacattct gtcatgacgc attttgatca aacgtttgta
     3601 caagatgatg tgtcggttta tggtaaaggc aaatcattcc acatacctga agatggcata
     3661 ctcgataaac atatcgcttc cattttagac gcgattcatg ttgtgcaacc gcaaatgatg
     3721 acgattcttg aagcgcatga acagacatca ttactctcag aaatcgagtt accactcgcg
     3781 ctcattttaa gtgaaatgga atatatcggt attcatactg acatcgacac attaaaagaa
     3841 atggaaacag tcattcaaac agaattggat cagttaatag aacaaattca tgaacaagct
     3901 ggtgaaaaat ttaatattaa ttcacctaaa caattaggcg tcattttatt tgaaaaactt
     3961 gagttgcccg tcattaaaaa aacgaaaaca ggttattcaa cagcggtcga tgtgctcgaa
     4021 aaattgcaaa atgctcatcc aattatcgac aacattttaa cgtatcgtac gttatcgaaa
     4081 ttgcagtcga cttatgttga aggtttacaa aaggtgattt gggatgacgg tcgcattcat
     4141 actcgtttta atcaaacact tgcacaaacg ggacgtctgt cttctgttga tccgaacttg
     4201 caaaatattc caattcgttt agaagagggg cgtaaaattc gtaaagcgtt taagtctacg
     4261 cacgaagatt atgtcattct tgcggcggat tactcacaaa tcgaattacg tgttttagca
     4321 catataacag gagacccaac gttgcaacaa gcgtttaatg ataatgaaga tgttcatacc
     4381 acaacagcga tgaaagtgtt taatgttgca gctgatgaag tcacatcatt aatgcgtcgt
     4441 caagcaaaag cagtaaactt tggtatcgtc tatggcatta gtgattatgg actcagtcaa
     4501 agtttaggta tcacacgtaa agaagcacag cgattcattg acgattactt gaaccatttt
     4561 ccaggtgtga aagattatat ggacaacatt gtgcaagatg ccaaacaaca aggttatgtg
     4621 gagacattat taaaacgtcg tcgttacatt cctgacatta cgagtcgtaa ctttaactta
     4681 cgtggatttg ctgaacgaac tgcgatgaac tcaccaattc aaggaagtgc ggcagatatt
     4741 atcaaattag cgatggtgca attccaccgt gaagtacaaa agacatcatt taaagctcag
     4801 ttattattac aagtacatga tgaactgatt tttgaagtgc cgaaagatga agtagatgaa
     4861 ttcggcaaat ttgttgagga aattatggcg catgcattac aattagatgt cccattaagt
     4921 gtagaatcag attatgggaa aacgtggtat gatgcaaaat agaaagtagg tatgacaatc
     4981 aatgccagaa ttaccagaag tcgaacatgt caaacgtggg attacgccgc atattatgca
     5041 ccaaaaggtt atagatgtga cgttttctga acctgtcaaa cgcggcaagt tagaagggaa
     5101 agaaacgata attaaaggga ttgaccttga tgcttttgtg aagtatacgg tcggttttga
     5161 gattgctgat gtgcaacgcc gcagtaaata tattttattt cgtatcgaaa atgggaatat
     5221 tgaacgtata ttaatttctc atttagggat ggcaggtgca ttctttgtcg tgcaatcgct
     5281 cgatgacatt gcgataccga attttcgaaa gcattggcaa gttgtttttc atttagaaaa
     5341 tggtattaaa ttagtctatt cagatattcg ccggtttggt gagattcgga atgtcgaaag
     5401 tttagaggct tacccatcaa ttttagagat tgcacctgaa ccttttgaac aagaggcgtt
     5461 agcctattat cttgctaaaa gtgatgaaaa gaaatattta aacaaagcga ttaaaccctt
     5521 tatactggat catcgtgtga tatcgggttg tggcaatatt tatgcgtgtg aagcgctgtt
     5581 tgatgcacaa attcatccgg agaaaaaagt aaaagacttg tcaatagcgg aaaagacaaa
     5641 gttatttaat agtgtagtaa aagttttaga aatgggtatt ttaaatggtg ggacaagtgt
     5701 ggcagattat gtacatgctg atggtcaaag aggtactatg caagatcatt tgaaagtata
     5761 taaacaaaag cgctgtgcaa cgtgtgaaac agcgattgaa acggttatta tttcaggacg
     5821 aaatacacat ttttgtccaa attgccaaag ttaggatagg tgaaattatg cccaaagtca
     5881 ttggattaac aggtggaatt gctactggaa aatcgacagt ggcagagtta ctcgcaatac
     5941 atggttttaa aatcgtcgac gcagatgttg cagcaagaaa agcagttgct aaagggacgg
     6001 aaggtttaaa aaaagttcaa gcgctatttg gcgatgaagc gatcaatgaa gatggcgaaa
     6061 tgaatcgtac ctttgtcgga caacaagtgt tttatgacga tgaaaaaaga aaacaactta
     6121 atgcgattgt gcatcctatt gtcggcaaaa tgatgaatca agagcgtgac caatatttag
     6181 cagagggaca taatgttatt atggatattc cactgttatt tgaaaatcat ttagaagcca
     6241 cggtagatga agtttggctc gtttatgcgt ctgaaccgat acaactcgat cgattaatgg
     6301 cgcgtaatga cttgtctata gaagatgcca aagcaagaat ctatagtcaa atttcaattg
     6361 ataaaaagag tcgcatggcg gatgtcgtca ttgataattt aggttcaaag ttggaattaa
     6421 aacaaaattt agaacagatt ttagtagaca aaggattttt agaagcttat catagtgact
     6481 cagaagaata gtggatgata actgacgtaa atatctatat aaattcagga gcttagacat
     6541 gcgtttgtct cagctcctga attttttacg ctttatgatt gttttggctg atgaagtaca
     6601 ataacaaaaa ataatagtag aaaacggttt cattttatcg caattatgat atactgttga
     6661 ttataagtat aacacattga taaggagtgc tttaaacatg acgacaaaga ttgcgattaa
     6721 cggtctgggg cgtatcggcc gtatggtttt aagagtggca ttaaatagag aagatgttga
     6781 ggttgtagcg attaatgcaa gctatccacc tgaaacgatt gcgcatctta ttaagtatga
     6841 cacaacacac ggacgcttta atcaggcggt tgaaccgatt gaagatggca ttcaagtgaa
     6901 cggtaaaaaa attaaacttg tgtcagatcg taatcctgaa aatttaccat gggcagcatt
     6961 ggatatcgat atcgtagtag aagcaacagg taaatttaat catggcgata aagcagatgc
     7021 ccacattcgt gcaggtgcta aaaaggtgat tttaacaggg ccttcaaaag gaggagacgt
     7081 gcaaacgatt gttaaaggtg tcaatgacca agatatcgat acagaacgtt atgacatttt
     7141 tagtaacgca tcttgtacga caaactgttt agcaccgatt gcaaaattat taaatgatcg
     7201 ttttggaatc gaaaatggct taatgacgac agtacatgct gtgacaaatg accaaaacaa
     7261 tttagataat ccgcacaaag atttacgtcg agcgcgtgca gcttttgaaa gcatcattcc
     7321 aacatcaaca ggtgcagcga aagcacttgc acttgtttta ccagaacttg aaggaaaaat
     7381 gcatgggatg gcgttacggg tgcctactaa aaatgtttca ctcgttgacc tagtcgtcga
     7441 tttaaaacaa tctgtgacta aagaagaagt gaatcaatta tttaaagaca atgatttgaa
     7501 tggtgttgtc gctatttcgg atgaaccact agtatcggat gattttacga ctgatgcaca
     7561 ttcagcaatt gtcgacacac cttcaacaat cgtcatggga gatcgtaaag ttaaggtact
     7621 cgcatggtat gacaatgaat ggggttattc aacgagagtt gtcgatgtat tacaacaaat
     7681 cgctgctcaa attccgagca cagtcgcaca ataaatcaaa tacaaaaaag tcgatgagaa
     7741 ttgaatcatc gacttttttg tatgtctgga tattaaagtt tcaaatggaa cgcatccatt
     7801 tattgtcagt caagacacta tgatacttgt cagttatcac ctaacttttg aaatcatgtc
     7861 gtttcatagt ataatgaaac aaaaactatg actaagaagg tgacaaagtc gtgaaatgtc
     7921 caaaatgcaa tcatacccaa tctcgagtag tggattcgag acatgcagat gatatgaatg
     7981 caattagaag aagacgtgaa tgtgacaatt gtggtacacg tttcactact tttgaacata
     8041 tagaaatgag tccgctcatc gtcgtcaaaa aagacggtac acgtgaacag ttcaatagag
     8101 aaaaaatatt aaatggctta gtgcgctcgt gtgaaaagcg accagtccgt tttcaacaat
     8161 tggaagaaat tacgaatcaa gttgaatgga aattgcgtga agaaggtatt gctgaagtgt
     8221 cttctagaga cataggggag tatgtcatga atttattaat gcatgttgac caagtctctt
     8281 atgttcgatt tgcttctgtg taccgggaat ttaaagatgt ggatcaatta ttacaatcta
     8341 tgcaagggat attgaaagaa aacaagcgga gtgaataacg aatgaatcat tttatgtatc
     8401 aaaatcagtt gagtccgcac gacgggttta tcgtcatgcg tccatttcaa tatcatgcag
     8461 tgcactatga tattttaaat cggttattca caccgttaat tggcgctgaa gcaatcggtg
     8521 tgtaccaatt tttgaaccaa tttgagtctg ctacattcga ccaagggttt acacattata
     8581 ctattatgtc cgagttaaaa ttaagcctcg gtcgttttag ggagttttta gatttgttgg
     8641 aaggcattgg cctgttaaaa acgttcgtcc gtcaatctga aaacacgaca caatttgtgt
     8701 atgaactcat acctccgcct acagcagaac gtttttttaa tgatccgatg ttgtcgattt
     8761 atttttatga agctgtcgga caggaacggt atcatacatt gaaaaatcat tttatgccta
     8821 cacaactcga tttggcagga ttttcaaatg tgacgaaaaa gttcacggat gtttttaaag
     8881 tgcctaagaa acaagcggcc acttcagatg tagcactcaa agcatcgcaa tatcaaggtg
     8941 ttgatttaac agatgtgacg tttgattttg aattgttggc tgatatgttg cagacgcatt
     9001 atgtgagcca aacgatttta tcagaaccga caaaatcgct tattgtgcaa ttggcgacat
     9061 tgtatcgttt atcgcctgat gttatgaaaa cgattatttt gaaatcgctc aatgcagacc
     9121 agtctttatc cgttaaagat ttacgtaaac aagcacaaag ttattattta atggaacatc
     9181 aacaacaatt accatcatta cagccgcaag tgacagtgac tgcttcagaa caaacgtctg
     9241 aagcacaaga agaaacggtc tcgaattggg atgaatggtt tgctttaatg gatcaaacga
     9301 gtccgattgt catgcttacg gaatatggag gttctgaacc gccgcgttat caaaaagaca
     9361 tggtggaaga attagtacaa cgtgaagggt ttaattttgg agtcatcaat atattattgc
     9421 aatatgtgat gcaaaaaacg gataataact tgccggaaaa atatgtctat tccgttgctt
     9481 caacgtggaa aaaaagtggt gtgacggacg cgcgttctgc atatgaaaag gcgatggaaa
     9541 ttcaaaaaaa ccaggaaaaa tcaaagcaaa aacgaatgga aagctattct caaaacacaa
     9601 atggtccatt ttataacaaa aaagaaaagc aaccgcgttg ggtgacacat ccagaagaat
     9661 acgaacaaaa agaagaagat caagaagcat tggaaaaaga tcgtgcagcg ttcttgaaaa
     9721 gattaaaaca aaagagaagg gcgggtgaag attaatgaaa agctttaata gtatcatcgg
     9781 tggtaacaat gctttcgaac aaaagattca acaaattaaa aagcaagtat tagcggatcc
     9841 agatgtaaaa gcatttttag ctgcacacca atctgaagta acgaatcgaa tgattgagga
     9901 agatttgaac atcttgcaag aatataaaga tcagcaaaag cgttacgatg ggacacatac
     9961 gtatgaaaat tgtcctaatt tcgtgaaagg tcacattccg gaattgtata ttgatcaaca
    10021 acacatcaaa attcgttaca agccttgccc atgtaaaatc aggcacgacg aggaacaaaa
    10081 tgcgaaaagt atgattacgt catttcatat gcatccagat acgttaaacg ccaaaattaa
    10141 agatatttat atgacgcgac gcaatcgttt agatttagca atgcaattag acgatttaat
    10201 cgatgccatt attgaaaagc gttcggtcaa aggtttttat ttatatggtg aattcggtac
    10261 aggaaagtca tttattttag gtgcgattgc gaacgagttg aaaaataatc gagtcccttc
    10321 gatgattatt tatgtgccag aatttattcg aacattaaaa aatggtttta aagatggaac
    10381 gacagcaaaa cgtattgaac aagttcgtga agcgcgtgta ttatttttag acgatttagg
    10441 tgctgaagat atgacgcctt gggtacgtga tgaggtgctc ggtccaattt tgcattaccg
    10501 tatgattcaa gaactaccga catttttcag ctcaaatatg aatttagatg aattagaaac
    10561 acatttggct gatacgaaaa atggtgttga tcgaatgaaa gcgaaacgga ttatggaacg
    10621 tgtgaaaact ttgagcacgc cttatttgct tgaaggagaa aattatcgta agcattgaaa
    10681 attttaaaat tagcgttata atatgtatat aaatcaataa tgttgctaaa gtttgaggat
    10741 atgatatcgg tatcactatg gtacagggaa ctactgtgat tgagaatgta gtgcatagtc
    10801 atcgatgtta ctccctctat agataaatgg tgtttgtaat gaatgcccgg ctcaagaccg
    10861 ttatcttatg tagagatgtc acaggatagg tatgtgacaa attagggtgg taacacgaaa
    10921 acctcgtccc ttatgttggg atggggtttt ttattttctt caattttaag caaaaatgtg
    10981 aaatggagga tcattatggc agaaattaaa gtgcagttcc cagatggtaa tgaaaaggcg
    11041 tttgaaaagg gtacgacaac agaagaaatt gcgcaatcca ttagtccagg gttacgaaaa
    11101 aaagccgttg caggtaaatt taatcaacaa ttggtcgatt taacacgtcc tttagaagaa
    11161 gatggcgcaa ttgaaattat tacgccgggt agtgacgaag cgttagaagt gttacgacat
    11221 tccacagcgc atttaatggc acaagcatta aagcgattgt acggtgatgt acatttcggt
    11281 gtcggcccag tgattgatgg tggcttctac tatgatttcg atatggaaga aaaggtttca
    11341 agtgatgatt tcgagaaaat tgaaaagact atgaaacaaa ttattgaaga aaatcataaa
    11401 gtcgagcgtc aagttgtttc aagagatgaa gcgaaggcat tttttgcaaa cgatccatat
    11461 aaattggaat taattgaggc gattccacaa gacgaacaag tgacattgta cagtcagggt
    11521 gaattcactg atttatgtcg aggcgtacac gtcccaagta catcgaaaat taaggcgttc
    11581 aaattgttat caactgctgg tgcgtattgg cgtggtgaca gtaataataa aatgttgcaa
    11641 cgtatttatg gtacagcatt tttcgacaag aaagacctaa aagcacatct tcaattgtta
    11701 gaagagcgta aagagcgtga ccaccgccgc atcggtaaag aaatggagct cttcacaaac
    11761 aatcaacttg tcggcgcagg tttaccttta tggctaccaa atggtgcaac aatccgccgt
    11821 gaaatcgaac gttatatcgt agacaaagaa attagcctcg gctatgacca cgtctataca
    11881 cctgtgatgg ctaatgtcga tttgtacaaa acatcagggc actgggatca ttaccaagaa
    11941 gacatgttcc cgccaatgca actggatgcg gatgaagcga tggtactgag accgatgaac
    12001 tgcccacacc atatgatgat ttatgctaac aagccccatt catatcgtga gttgccaatt
    12061 cgtattgcgg aacttggtac aatgcaccgt tatgaagcaa gtggtgctgt atcaggatta
    12121 cagcgtgtgc gtgggatgac tttaaacgat gcgcatatct tcgtgcgacc agaccaaatt
    12181 aaagaagagt tcaagcgtgt cgttcaaatg attttggatg tatatgaaga ctttggtttt
    12241 gaggattaca aattccgttt aagttatcgt gataaagcgg ataaagaaaa atattatgac
    12301 gatgatgaca tgtggaacac tgctgaagcg atgttaaaag aagcagtaga tgaaatgaac
    12361 ttaccgtatg aagaagcgat tggtgaagcg gcgttctacg gtcctaaatt agatgttcaa
    12421 gtgaaaacgg cgatgggtaa agaagagaca ttgtcgacag cgcaacttga cttcttatta
    12481 ccgaaaaagt tcgaacttac ttacattggt aaagatggcg aacatcatcg accagtcgtc
    12541 attcaccgtg gtgtggtttc tacgatggaa cgtttcgtag cctttttaac agaagaaaca
    12601 aaaggggcgt tcccaacttg gttagcacca caacaagttg agattattcc agttaacaac
    12661 gacttgcatt acgattacgc acgtcaaatt cacgacgaat taaaatctca aggtgtccgt
    12721 gtgcatattg atgaccgtaa tgaaaaaatg ggttataaaa tccgtgaagc gcaaatgaag
    12781 aagatcccat atcaacttgt tgtcggggat aaagaacttg aaaacaatga agtcaatgtc
    12841 cgtcaatacg gttcaaaaga ccaaaaaact gttgaaaaag atacattcat ttgggactta
    12901 gtcgatgaaa ttcgtttgaa aaaacaaaga taatgttgat aggtgcacga ctatcatgta
    12961 tagtaataaa tgaaacaatt tataatacga tttgattgag ttagaggcgc aactttgatg
    13021 agtagcggtt gggttgtatg atggtacaaa gccccaacat gtgaaaggta aagttgccga
    13081 aacggaaatg gaccatcgcc atttctcgtt gggctagtgt tcgaaaggcg ctagactgtc
    13141 acaaatgtga tgtgctaccg attcataaat aatgagcagc ggtggcatca acatagatgt
    13201 catcactgct tttatttttt actaggttga atgatttgat atttaacgag cttcacacaa
    13261 tttgtcttaa cctctaagca attaggaaag gattaagaaa atgagtaatg aaaaaacaga
    13321 aaatcaacac gcagttcaac gccatcttaa agaccgtcat atttcgatga tcgcgattgg
    13381 tggtgcgatt ggaactggac tgtttatgac atctggaggc gctattcatg atgcagggcc
    13441 tttaggtgca cttttaggct atgcgattat cggtgtgatg gtgttctttt taatgacatc
    13501 actaggggaa atggcgacgt atctacctgt tacaggttcg tttagcacat atgccacgcg
    13561 ttttgtcgat ccgtctttag gttttgcttt aggatggaac tattggttta actgggtcat
    13621 tacagtagcg gccgacgtta cgattgctgc tcaagtcatc caatattggg cccccttaca
    13681 atttttacct gcttgggcat ggagttgtat cttcatggtg attattttta gccttaatgc
    13741 cttgtctgtc aaagtatatg gtgaaagtga atattggttc gcattcatca aagtggcgac
    13801 ggtgattgtc tttattattg taggtttatt gacaatttta ggaattatgg gcggtcaagc
    13861 agtgggcttt gatacattta caactggtga cgcaccaatc ttaggtgacg gttttggtgg
    13921 tagtttgctc gttgtgttcg gcgtgttctt agtcgctggg ttctcgttcc aaggtactga
    13981 gttagtgggg attactgcag gtgagtctga aaatcctcag cgtgccgtac cgaaagcaat
    14041 taagcaagtg ttctggagaa ttttactctt ttacatttta gcaatcttca ttatcgggat
    14101 gcttattcct tacaattctt ctgccttaat gggcggtggg gatgacattg caacttctcc
    14161 atttacactc gtctttaaaa atgcaggact cgcgtttgct gcctcattta tgaatgccgt
    14221 aattttaaca tctgtattat cggcgggtaa ctctgggatg tatgcaagca cacgtatgct
    14281 gtattcgatg gggaaagacg gactcgcatc taaagcattt agtcgtacaa ataaaaacgg
    14341 cacaccaatc ttgtcgatgt tatctacagc gctgattgtt gtgttgattt ttgtattaca
    14401 acatgtcagt ggcgatgcgt acgaatatat tgttgcagcg agtggtctga caggctttat
    14461 cgcatgggta ggtattgcgg tcagtcatta tcgtttccga aaagcgtttg cggcacaaaa
    14521 ttacgatgtt caaaaattaa agtatcaagc gaagtggttc ccatttggtc cgattctcgc
    14581 agctgtgctt tgtattattg ttatcatcgg acaagatgtt gattttattc aaacgggtga
    14641 ttttgatatc aatcgatttt taattactta tatgggtata ccagtatttt tagcgttctt
    14701 catctatcat aaagtccgct ataaaacgaa attgattcca ttaaaagacg tcaacttaga
    14761 tccgaatgtg gaaacagttg aaaaaaactt tcaaaaaaac attgactaat atacactgag
    14821 ttggtatgat tgtatctgtt gaatacgaaa cggaccaagt agaagcatcc cgcttctcac
    14881 ctgtagcgac gcaacaagct gttggcaggt taacgattaa acatgtagtg tatgttcatg
    14941 ttgacgtgag aagcgggggt tagataccct cgcttttttt cgtacttgga ccattcgtaa
    15001 actttttgga ggtgtcaacc atagctaaag atcaaacgca agttaacgaa aagattcgcg
    15061 caaaagaatt acgtgtcatc ggacaaaatg gtgaccaaat cggattgaag tctaaaaatg
    15121 aagcattgga aatggcagat cgacttggtt tggatgtagt cgttgttgcg ccaaatgcta
    15181 aaccacctgt tgctcgtatt atggattacg gcaaatacaa attcgagcaa cagaaaaaag
    15241 aaaaagagat gaagaagaaa caaaaaatca tcaacgttaa agaaatccgt ttaagcccta
    15301 cgattgaaga acacgacttc aatacgaagc ttaaaaacgg acgcaagttt ttaacaaaag
    15361 gtgacaaagt taaagtttca attcgtttca gagggcgtgc gattacgcat aaagaaattg
    15421 gacaacgcgt gttagagcga tatgctgaag cgtgccaaga ccttgcaaca atcgagcaaa
    15481 agccgaaaat ggaaggtcgt caaatgttcc ttatgttagc cccaattaat gaaaaataaa
    15541 aagtgataat aggaggaaaa catcatgcct aaaatgaaaa cccaccgcgg agctgcgaaa
    15601 cgtgtaaaaa gaactggatc tggtcaactt aaacgttcta gagcatacac ttcacactta
    15661 ttcgctaaca aatctacaaa gcaaaagcgt caattacgta aagcttcatt agtatcaaaa
    15721 agcgatgcaa aacgtgtaaa acaattatta acatacgtta aataatcatt ctaaagtacg
    15781 aaaatatatg agaggtatgg cagaagcgca taccgtagag ataaaaggag gagtttatta
    15841 tgccacgtgt taaaggtgga acagtaacaa gagcgcgtcg taaaaagaca atcaaattag
    15901 ctaaaggtta cttcggtgcg aaaagcacat tatataaagt tgcaaaacaa caagttatga
    15961 aatcaggtca atatgcattc cgtgaccgtc gtcaaagaaa acgtgatttc cgtaaattat
    16021 ggattacacg tatcaatgcg gctgcacgtc aacacgacat gagttactct cgtttaatga
    16081 acggtttaaa acaagcgggt atcgacgtta accgtaaaat gttatcagaa atcgcaatct
    16141 cagatgagaa agcatttgct gaattagtaa atcaagcgaa agcagcttta aaatagtaga
    16201 gaaagagttg gggtctattg tgacgcgcca actctttttc attatgactt taccattatt
    16261 catttctttt gttacgatat aaaaaacgaa taaaaggagc tcacaatgtc aaaatttgat
    16321 gaacaaatta ctgtagtccc acgacgtttg ctttttgaag aagaggcgct cgcattcaat
    16381 gggtttttag atcaatctga agagaagggt caaaaaattt atgaaaagct ttctcaatat
    16441 gaagtgaaaa gacgtggtga tatggaagaa gatcctagct tcaaacaatt gattagttat
    16501 tgtttaattg aaaatgagca tgatgaatta ctcgtctatg agcgattatc aggtggtggc
    16561 gaggcacgac ttcacggcaa tgcgtctatc ggtgtaggcg gacacatgaa tgatgttcct
    16621 gaagcgcacc atattgatga agtcattaaa acaaatgcaa gtcgagaact tgaagaggaa
    16681 atcggtgtta aaattaacaa tcaaacaccg cttgaattca taggctttat taatgatgat
    16741 cataatgaag tgggtcaagt tcatatcggt gtcgtgttta aagtgaaggt taagcaacaa
    16801 gatgtcgaag tgcgtgaaac ggatacttta aagattcagt ggcaaccatt aagccaaatt
    16861 agtgacacga gcgcattcga atcgtggagc gcgttaatat tagagcagtt gaaataggtg
    16921 aatggcatgt ctgatatcat tccatttcct aagcttaaag aaaagttaat atatgatatt
    16981 acagaggcat tcgacaagga acgttatgaa gacgcttatg attatttcat tgcgtatgaa
    17041 cgtcactttg aattgacatc tgaacttgcg cttttaaaat gtgatatatt gtggcaactt
    17101 ggagcttacc ttgaattaaa agaagaggcg aacattttaa tgatgcaagg ttttccgcca
    17161 tatgatacat tcatcgtgta ttacattaaa agtctgtatg cattagaaca atataaagcg
    17221 gcagttgaaa tggtggacca ggttcttgat gatgtcgttg cacatgaaac gcgtatgact
    17281 ttattaccta ttaaaaatca agcacaatcc aaactggacg aacgccaaga ttatatgttg
    17341 catcgattac aacggtttac tgagctgagt cattatgatc aaacgcaatt agtactcaca
    17401 ttaattgatg atcgtgtcta tcagtacagt gaaacgattg cttatttgtt agttcatgag
    17461 tcaatcgttt caagtgttca aagtttgatg ttagaatatt tacgttttgc tggatacaat
    17521 caaggcatca ccatagagaa agattttcgt caaattcaag tgatacccgc tgaacttgta
    17581 ggaattgaac aaacagcctt taaagatcga ttgttgcctg cagtgattga tgctttagaa
    17641 gtggagatac cttcacttgt tcaagaagcc tatattttac ttaatacaaa taatattgca
    17701 ctttatcctg taaatatcct agactatgga actgtagaga tgtggcgtga tgcttatgtt
    17761 gcatatttcc atcagttaat gggggaggaa gtcaatgtgg attcattata tgtagagata
    17821 tttaaactca taaaatcgtt aaatacatag gtctcattat ttcaaagaag gtcaacctat
    17881 gttataataa agaagttgaa aaattttaaa aatgataaat catggaggtt tttatacatg
    17941 acagcaactt gggaaaaaaa agaaggtaac gaaggattat tacaagtatc cgtacctgca
    18001 gaagaagtag ataaagcatt agatcaagct ttcaaaaaag tagtcaaaca acttaacgta
    18061 cctggtttcc gtaaagggaa agtacctcgt caaattttcg aacaacgttt tggtgtagaa
    18121 gctttatatc aagatgcagt agacatctta ttaccaaaag catacagtga agctgtacaa
    18181 gaaacaggta ttaatccagt tgatcaacct gaaattgaag taacacaaat cgaaaaaggc
    18241 caaccattca cttttgatgc aactgtaatc gttgaacctg aagtacaatt aggtgactac
    18301 aaaggcttag aaatcgaaaa acaaaacact gaagtgactg aagacgaatt caacaaagca
    18361 gtagaacaac gtcttgacgc tatgactgat atggtcgtta aagaagacgg tcaagttgaa
    18421 gaaggcgaca cagttaactt agacttcgat ggctatgttg atggtgagca attcgaaggt
    18481 ggtcaagctg aaggatatga cttggaaatc ggttcaggta tgttcatccc aggttttgaa
    18541 gagcaacttg taggcttaaa agttggggaa gaaaaagaag ttgaagtgac attcccagaa
    18601 gaataccatg cagaagaatt agctggaaaa cctgctgtat ttaaaacaaa aattaacgaa
    18661 atcaaagcaa aagaagtacc agaattagat gatgagcttg cgagtgaatt agattctaat
    18721 gcaaacaatg tagaggaatt caaagcaaac ttacgtcaac aacttgaaga gcaaaagaaa
    18781 actgacgctg aaaatgcgca aaaagaagaa gcgattactt tagcaactga caatgcgaca
    18841 atcgatattc cagaagctat ggtacgtaca gaacaagatc gcatgatgag cgaatttgca
    18901 caacgtattc aacaacaagg tttagactta aacacttact tccagatttc aggtcaatca
    18961 gaagatgatt tacgtgaaca aatgaaagaa gatgctgagt tacgtgtgaa aacaaactta
    19021 acattagctg ccattgcaga tgcagaaaat atcgaagtga ctgatgaaga tgttgacaaa
    19081 gagcttgaaa caatgagcga acaattcaac atctctgttg aagatattaa gaaaacactt
    19141 ggcaacactg atcttgttaa aaatgatgtt cgtgtgaaaa aagttattaa cttattagta
    19201 gacgaagcga aattagttga aagcacttca gaagataaca aagaagaagc ataagcacgc
    19261 atatcttatt gatgcgtcgt attgaaaact ttcattacaa atttgaatga taaaatttaa
    19321 tgaaggttaa tcagtgggac cgcacatcac ctgaagttga tgtgcggtcc cactaacaca
    19381 actctcaatg aaccgtttca acaaatttta atatgatgtg aaatcaaccg gggtgggttg
    19441 ttgtactcaa atgatgccat ttgacaacaa ccgcactccg cttagtattt atgacaacat
    19501 ctgttcaaac agttgcgtta atgaattttg caaatgattt gatttttatg tcgctagcac
    19561 ttagtatatt aacggcaagc ttggggaatt tcattcagca actttgagtg tattttgttg
    19621 gatgaagcgt tggtatgaaa ctttatgaag acactacgaa taaaaataga tgagaaacag
    19681 aagttgagga tgacttttac tggggccaca atatcacaca tctgttgtgt tttattgtgc
    19741 aaaatgcaaa aaacttgaaa tggtctatat ttgcgtaata gaatgctttc tagtatagtc
    19801 gtaaaagaac aggggtgtaa taaagtatgt ttaaattcaa tgatgatgaa gaaaacttaa
    19861 aatgttcttt ctgtggtaaa gatcaagacc aagttaaaaa attggtagca ggtagtggtg
    19921 tttatatttg taacgaatgt attgagctat gtgctgaaat cgttgaagaa gaattaaatc
    19981 aacaacaagc agaagaactc actgaattac caacaccaaa agaaattatg gatcaattaa
    20041 acagctatgt tatcggccaa gaaaaagcga agaaatcatt ggcagttgct gtatacaatc
    20101 actacaaacg tgttcaacaa cttgggccta aagatgatga cgttgaatta caaaaaagta
    20161 atgtcgcttt aattgggccg acaggtagtg gtaaaacatt actcgcacaa acattggcac
    20221 gtacgttaaa tgtgccgttt gccattgccg atgcaactag ccttacagaa gcaggttatg
    20281 tgggcgaaga cgttgaaaac attttattac gtttaatcca agctgctgat tttgatattg
    20341 ataaagcaga aaaagggatt atttatgtcg atgagattga caaaattgca cgtaaatcag
    20401 aaaacacatc catcacacgt gatgtttcag gtgaaggtgt gcaacaagca ttgcttaaaa
    20461 ttttagaagg tacaacagct agtgtgccgc ctcaaggtgg acgtaaacac cctaaccaag
    20521 aatttattca aattgataca acaaatattt tatttattct tggcggtgcg tttgacggta
    20581 taaatgaagt gattaaacgt cgtcttggtg aaaaagtaat cggttttgcg agcaatgaag
    20641 cttctaattt cgatgaagcg agcttattag agcaaatccg tccagaagac ctacaaactt
    20701 atggcttaat tcctgagttt atcgggcgtg taccaatcgt tgcaaacctt gaaacattag
    20761 atgttgaagc gttgaaaaac attttaacac aacctaaaaa tgcgttggtt aaacagtaca
    20821 ctaaaatgct tgaattagat gatgtagctt tagaatttac tgatgaagca ttagctgcaa
    20881 ttagtgaaaa agcaatcgaa agaaaaacag gagcacgtgg tttacgctcg attattgagg
    20941 aagcattgat tgatattatg tatgatattc cttctacaga aaacgttgct aaagttgtca
    21001 ttacaaaaga aacaattgta aatgagacag agcctgaact gtacgatgcg gaaggtaacc
    21061 ttgtgaatac aacaaaaaca tctgcttaaa atcatgtttc agtgatcgaa tggataagta
    21121 cgcttaattt taaaaaggct gggtttcata atcaggtcag attatggctc agctttttta
    21181 tttcgcttta gtataaatat caaatatgta aaaatataaa taatcattat ttcgataaag
    21241 agaaaccgta catttgttga aaagctttga gcaattaagg taatctaaaa agagtatgat
    21301 gatacataaa cgaggtgtaa aactgatgaa tatcaaccca aatgaagtag acattctaat
    21361 tagtgctgtt aaaccagagc aataccctga gttagatttg cctgaagttg cattaagtgg
    21421 tcgctcaaat gttggaaaat caacatttat taacagtatg attgggcgaa aaaatatggc
    21481 gagaacgtct caacagcccg gcaaaacgca aactttaaac ttttttaata ttgataacca
    21541 attgattttt gtcgatgttc caggttatgg ttatgcgaag gtaagtaaaa agcaacgtga
    21601 agcttttggt aaaatgatcg aaacttatat tacaacacga gaagcattaa aactcgtgat
    21661 tcaattagta gatttacgcc atccgccaac tgaagatgat gtgttaatgt atgacttttt
    21721 gaagtattac gacattccga cactcattat cgcaacgaaa gaagataaaa tccctaaagg
    21781 taaagtgcaa aagcatatta aaatcattaa agaaaaattg gagttagaat ccggcgatca
    21841 aattatcagt tactcatcaa ttgagaaaaa gaaacaagat caaatctggg cagccattag
    21901 tgcgttcatt gctgaagaat aacctattat caacagatga aaatcatgca cgactacaat
    21961 tatgacaaaa atttggaagg atgattaaaa atcttaacat gattatgcat ttttaattag
    22021 aatgactcta atctgtgtta taatgtagtc attgtagaat atatgggggc ataagcatgt
    22081 acttaatagc agttagtgtg aatcatcgaa cagctgatgt agcatgtcgt gaaaaacttt
    22141 catttcaaga agaaaatttg acacacgtac atgaagcgtt gttcgagaca aaatctattt
    22201 tagaaaacgt gattttatca acgtgtaacc gtactgaagt gtatgcggta gttgaccaaa
    22261 ttcatacggg acgttactat attcaaagat ttttggcgcg acaatttaat tttgaattag
    22321 atgatatcaa ggcgatgtct gaagtgaaaa ccgaagacga agcaattgaa catctattca
    22381 gagttacagc aggcttagac tcaatcgtat taggtgaaac acaaatttta ggtcaaatga
    22441 gagatgcgtt tttcacagca caagcagcgg gaacaacagg tactattttt aatgaactgt
    22501 tcaaacaagc aatcacattt agtaaaaaag cacatcatga aacagatatt gctaataata
    22561 caattagtgt gtcttacggt gcggttgaac ttgcgaaaaa aatgttcggt aaaatgaata
    22621 aaaaacaagc attagtcatt ggtgcgggcg aaatggcaga attagctgtt ttaaacttaa
    22681 aaggtgctgg cgtgcgtcac attacagtca ttaaccgtac attatcacgc gcacaagcat
    22741 tagcagatca acatggtgta caagttggag agtgggcatc actaggggaa gccattgttt
    22801 cagcggatat cgtgatcagt tcaacaagtg cagaacaatt tatcattaca aaagagatgt
    22861 tagaaatgtg tcaaagtgtt gcaaaatcat ctcaaaaagt catgattgat attgctgtac
    22921 caagagatat tgaacctgtc gacgtttcac attcagagtt gtttatttat gacgtagatg
    22981 atttaaaagg tctcattgat gccaacttgc gtgaacgtca acttgcagca gaacaaattg
    23041 catcacgtat tccaacagaa attgataaac ataatgaatg ggtgcgtatg cttggtgtca
    23101 ttccggtcat tcgtgcgtta cgtgaaaaag caatgcaaat ccaacaagat acgatggata
    23161 gtattactcg aaaattacca aatatgtcag agcgcgaacg aaaagtgatt tctaagcata
    23221 cgaagagcat cattaatcaa atgctaaaag atccgatcaa acaagcgaaa gagattagtg
    23281 atgataagca tgcggatgcg aagttagcac tattccaaga aatttttgat ttagaagttg
    23341 aagcagatta taaaacacaa gcgattaaaa agaaaaaatc tgtgttgaaa gaaagattat
    23401 taagtataga aacttaaaga acggtgatgc tatggaagaa gcgtttttca tacgttttca
    23461 tgaagtcatt ttattgattt atttagtcag tatggtgtgt ttgataatag atgtatttca
    23521 aaagaattat cgtctacaaa atatagggtt ctatgcttta gggattgttt ggttttgtca
    23581 aacaatctct ttaactatgt ttattatatg gcaaaagcaa ctccctttaa cctctttaat
    23641 cgagagtttt tacgtattaa cgtggttgat tttgacgatt acttttgtga tgtccgtgtt
    23701 gcgtcagtct gagtttatga tcgccttttt gaatgtgatt gggtttgtct tcatgacgat
    23761 tcacacattc cacccacgac aatttaaatt ggacggtgca cgactcacag ctttgaatga
    23821 attactgttt ttccacattt cactcgcatt gttgagttat gtggttttcg cagttgcgtt
    23881 tgtaaatgcg attatttatt taatacaata tcgaaattta aaagaaaagc gatttacgca
    23941 aaatttcttt agaatgagta gtatcgcaac acttgaaaag ttagtgtttt acagttcttt
    24001 gattggtgtc atatttatgt tcattagtct cgtactagga attcaatggg gtatggtatc
    24061 gattggctat gatatctttt tagacttgaa agtgatctcg tcaattatta tttttattgc
    24121 ctattctatt tttattacat tacgattgac gcgtcgtttt aaacagtcat ttttaatgaa
    24181 tttaaatatc atgttatttt tatgctgtat gatcaattta gttgtggtga ctcaattatc
    24241 aacatttcac caatggaccg gagtttaatt tattttaatt ggaggaaagc actatgcgta
    24301 aacttatcgt cggctcaaga agaagtcagc tcgcattgac tcaaagccaa caatttattg
    24361 atcgtttaaa agaagttgat cctactttag atatcgaaat taaagaaatt gtaacaaaag
    24421 gggatcaaat tgtggatcgt caattatcta aagtcggtgg taaagggtta ttcgtgaaag
    24481 aaatacaaaa cgaactcttt aaccgagaca ttgatatggc cattcattca ttaaaagacg
    24541 ttccaagcga attacctgaa ggcctcactt tagggtgtat tccagaccgt gaaaatccat
    24601 ttgatgcttt catttcaaaa aaccatatcc cgttggacga acttcctgat ggtagtatta
    24661 ttggaacaag ttcattaaga cgtggtgcac agattttagc gaagtatccg aacctagaaa
    24721 tcaaatggat aagagggaat attgacacac gtttgaaaaa gctagaaaca gaagattacg
    24781 atgcgattat tttagcggca gcaggtttga aacgcatggg ttggtctgat gacatagtga
    24841 caacatattt agatgaagac ttactcgtac cggctattgg ccaaggtgca cttggtatcg
    24901 aatgtcgtgc agatgatgat gaattgttag cattacttgc aaaagtacat aatgaagacg
    24961 tggcggcatg tgtcactgca gagcgcacgt ttttaaaaga aatgaatggg agttgtcaag
    25021 tccctatcgg gggctatgca acccgtaaaa atgatacaga gattcaattt acgggtttga
    25081 ttatgtctcc agatggtaaa caaagatttg agtacacatt ttcaggtcaa gatccaatac
    25141 aagtcggtag cgaagtgagt cgtgttctta aatctcaagg tgcggataag attattctag
    25201 ctttaaatga gaaagaggtg taaatgatga agcctattat agtgatgacc caaaccaagc
    25261 gttatgatga tcagcgcgct gaaatcgttc atcttccatt tgtgacgact gaaccacttc
    25321 cttttgatca atcagtgcta ggtcgtcact atgattggct tgtttttaca tctcaaaatg
    25381 ccgttacgca ttttcaacct tatttaaagt tgttaaattt taatagatta gcggtcattg
    25441 gcgagaaaac gaaagcattt tgtgaatcac aagggttgcg agtggatttc ttcccagcag
    25501 attactcaca agaaggattt ctcgatgcat tccccacaca acaagggcag catattttga
    25561 ttccatccag tcaacgcgca cggccattac tgcaagaagt gttgcaagta cgtggtttca
    25621 atgttgaaaa aattgatttg tatacttcat gttttttatt ggaaaatgtg aaagaagcca
    25681 aagcacgtat cgaaacaggt caagtggatg cattgacgtt tgcgagtgct tctgctgtca
    25741 aggcgttttt tcacgatgat acgtctttaa atttcgactc gtattatgca attggtcaac
    25801 aaacagcacg acagattcaa gattacggct attcatgttc tattgctgac attcaaactt
    25861 tagaatcaat ggtgacaaaa attttagaag agagggttca ataatgcaat tcgatagaca
    25921 tagacgatta cgttcatcaa aagtgatgcg tgatatggta agagaaacac atgtgagaaa
    25981 agaagatttg atttatccta tttttgttgt agagaaagat gatgtcaaag cagaaatcaa
    26041 atcattacca ggcgtatatc aaatcagctt aaacctacta catgaagaat tgaaagcggc
    26101 atatgattta gggattcgtg ccattatgtt ctttggaatt ccgaatgaaa aagatgcatg
    26161 tgggaccggc gcatttattg aagatggcat cattcaaaaa gcaacacgtt tggcaaagtc
    26221 catgtataat gatttattaa ttcttgccga tacatgttta tgtgaatata cggatcatgg
    26281 tcattgtggt gtgattgaca cacatacaca tgatgtcgat aatgataaaa cattgccttt
    26341 acttgttcaa acagctgttt ctcaagtgaa ggcgggcgca gatattattg ctcctagtaa
    26401 tatgatggat ggatttgtgg cagcaattcg ccaaggttta gatgaagcag gatactacca
    26461 tattccaatt atgagttacg ggattaaata tgcgtcaagc ttcttcggcc cattccgtga
    26521 tgcagcggaa tccgcaccat catttggtga tagaaaaacg tatcaaatgg acccagcgaa
    26581 ccgtcttgaa gcgttacgag agttagaatc tgatcttaac gaaggggcag atatgatgat
    26641 tgtcaagcca gcgttaagtt atcttgatat tattcgtgat gtacgtaaca atagcaacgt
    26701 accgattatt gcttataatg tgagtggtga gtacagcatg acaaaagcag cagcattaaa
    26761 tggttggata gatgaagaaa aagttgtgat ggagcaaatg atttctatga aacgcgcagg
    26821 agcagatatg atcatcactt actttgcgaa agacatttgt caatatttag atcaacaata
    26881 ataggaggcg gcaatattgc gttataacga atcaattaaa gcatttgaaa aagcagaaca
    26941 actgatgcct ggaggtgtga acagccctgt acgtgcattt aaatcagtag acacaccagc
    27001 gatttttatg tcacgtggtg aaggaagccg tatttatgat attgacggaa atgaatatat
    27061 cgactatgtg ctcagttggg gaccgcttat tttaggtcat cgtgattcta aagtaattga
    27121 agcgattcat gatgttgtcg aacgtggtac aagctttggc gcatcaacat tagaagaaaa
    27181 ccgtttggct gaattagtga ttgaacgtgt gccttccatt gaaaaagtgc ggatggtgtc
    27241 atcaggaaca gaggcaacat tagatacatt acgattagca cgtggttata ctggcaaaaa
    27301 taaaatcatt aaatttgaag gtaactatca cggtcatagt gattcgttat taattaaagc
    27361 cggctcagga gttgcaacgt taggtttgcc agattcacct ggtgttccag aaggtacggc
    27421 gaaaaataca attacggtgc cttataacga tcttgaagcg gtgaaatacg catttgaaga
    27481 gtttggtgat gatatcgcag cggtcattgt agagccagtc tcaggaaaca tgggtgtcgt
    27541 accaccgatt aacaacttct tacaagggtt acgcgacatt acgaaagaaa atgacgcttt
    27601 acttattttt gatgaagtga tgacaggttt tcgcgtaggt tacaattgtg cacaaggcta
    27661 ctttaacgtc attcctgatt taacgtgtct aggcaaagtg attggcggcg gtctacctgt
    27721 tggtgctttc ggtgggcgta aagaaattat ggatcatatt gcaccaagcg gcgatattta
    27781 tcaagcaggt acattatcag gtaatccgct tgcaatgacg agtggttata tgactttaag
    27841 ccaattaaca ccagaaagct atgattactt taatgaactt ggtgatatgt tagaagaagg
    27901 tttaactgaa atcttcgcca aacatcaagt gccgttaaca gtaaatcgag caggttcgat
    27961 gattggattc ttcttaaatg aagggccagt cacaaacttt aaagaggcaa atcaatctga
    28021 tctagaatta tttggtcaat tgtatcgtga acttgctgaa caaggtattt tcttgccacc
    28081 atcacaattt gaaggtatgt ttttatcgac agcacataca aaagaagaca ttgaaaaaac
    28141 attgcatgct ttcgatgttg cgttagaacg tctcggaaaa taattaaata caacttagat
    28201 gaggtgggga ttgatgtggt cccgacctct tttttctaat ggtgtaaatt tgaagcctat
    28261 tatcatacgt tttttgtatg ctagtgatca tcatttatcg caattctagc gtataggttt
    28321 tacgaattgc atgttcaata gaaaagcgta taatatatgg ttgctatgaa tggagtgagg
    28381 tcattccgca actgtgttaa ccttactcct cattgtgata aaaaattagg aggcgaggcc
    28441 atggcacaaa ataaaatgtt caataattta cttgtactcg tcattgcgat tttgtttggt
    28501 tggctcttgt ttgcattgca tatcatgttg ccatggatgt tcgggcccat tttggcaagt
    28561 atttttgtcg taaaagtact aaaacgcgat gttcaatggc cgctttggtt gagtgaactg
    28621 ggtttaatta tgctcggagt tcaaataggg acttcattta caagaagcgt gacaagtgat
    28681 attaaagatg attggctcgc aattgtttta gtgagtgtcc tcatattatt gttagcactt
    28741 gtcgtctcca ttggttttag aaaaattgca catgtcaatc gtgaaacggc aattttaagc
    28801 gtcatcccag gggcgttgag tcagatgatt gtaatggctg aagaaaataa aaaagcagac
    28861 atccttgtcg tgagtctgac acaaacgtca cgtgtcattt ttgtcgtgtt attagtgcca
    28921 ttaatatcat ttttctttaa aactgatcat tcgaatcgtg tcactgaagc aaatgtacaa
    28981 tatttaacag atgttttaac gatacaacat attgtaatca ttgctttagg gattgcagtc
    29041 gtttatatac tgatgaagtg gatccatttc cctacaaaaa tgttgatggc acctattgtt
    29101 gtgttagtca tatggaattt tgtaacgaac cttacattca cacttgatgc acctattatt
    29161 gcaggtgcgc aaattattta tatgattcgt gtcggtattc aaattgcgca tttaaccgat
    29221 caattaaaag ggagaattgc agtagcaatt gcttatcaaa atgtcatgct catttttgga
    29281 gcgttagcaa tggtttatct tgtacaattc attaaccatg cttctattga tgaattattc
    29341 ctcggcgcgg caccaggtgg gatgagtcaa atcgtcttag tcgcattgga tatcggagcg
    29401 gacgttgcga tgatttcaag ttatcatatt ttccgtatat tctttatttt atttttaata
    29461 gcaccattag tcagtgtgta tttaaaatgt ttagagcgta acaataaaaa tgatttcaat
    29521 taagggcttg gataatgtca cgttcaagtc cttttatatt gcgcaatgtt attgatgggt
    29581 atgtgaaata gattgatcta atatggttta gcggttggga catgatacta aatggctgtt
    29641 ataaaggccg gcagcttcca taaatgaaaa tgtag
//
LOCUS       DANHOL010000011        28701 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.011, whole genome shotgun sequence.
ACCESSION   DANHOL010000011 DANHOL010000000
VERSION     DANHOL010000011.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 28701)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28701)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28701
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.011"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(352..1443)
                     /locus_tag="PTC08_000330"
     CDS             complement(352..1443)
                     /locus_tag="PTC08_000330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 3-deoxy-7-phosphoheptulonate
                     synthase/chorismate mutase"
                     /protein_id="HDK5681864.1"
                     /translation="MTSKLETYRKQIEDINDQILDLLSKRGELAQKIGEEKRKQSTVI
                     YDPQREKEMLNTLIDKNQGPFNDNVIKQLFKEIFKASTDLQKSDNEKHLYVSRKLKPE
                     DTIVHFDNGGIIGEGQKSFVFGPCSVESYDQIDAVAKDLKAKGEKFIRGGAFKPRTSP
                     YDFQGLGEEGLKILKQMKDKYDLNVVSEIVHPNDFELADQYLDVFQIGARNMQNFELL
                     KEAGRTRKPILLKRGLSATIEEFVYAAEYIASEGNQNIILCERGIRTYEKATRNTLDI
                     SAVPILKQGTHLPVMVDVTHSTGRKDIMLPAAKAALAVGADGVMAEVHPEPAVALSDS
                     GQQMDLNEFNEFYNVIKPLADMYNEKKLK"
     gene            complement(1763..2860)
                     /locus_tag="PTC08_000331"
     CDS             complement(1763..2860)
                     /locus_tag="PTC08_000331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5681865.1"
                     /translation="MEKYNRDLYTKGLESYEVPQYEPGYKPLDFVFGFVAGAVLGSAL
                     GLILKPGSAQQRRKSSQQTVNAEPSSALKEEAIRKAEALKAQARRVREESKTSTDEPT
                     ADELSAQQRAIRNEVDSDRLEGQTPREPSTSETTVATSTTEAVTATGLAQAANQRQSQ
                     KQQETEASALSTPSTENSTVAAQQRAIQSEVDSDRLQDTSVRGKDANVKVSDKGESEA
                     QSTQDSTVKAQQRAIRSEVDSDRLQDKGQSTNAQVNDQGKTVDAVKADPTAAVPKNSH
                     SQATFENGVITHDRQGATTEKTTSQQGATKIANDQPTASKTKASASTSKSNSTSTAKK
                     ATSSKKTNGSKKVTEKAKKTNQKVEKHTFND"
     gene            complement(2956..3564)
                     /locus_tag="PTC08_000332"
     CDS             complement(2956..3564)
                     /locus_tag="PTC08_000332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF948 domain-containing protein"
                     /protein_id="HDK5681866.1"
                     /translation="MEWILPIAGIIAAIAFLILAIGIVAVLVSVKKNLDHVAKTLDGV
                     EGQIQGITRESTDLLHKANRLTEDVQDKANRLNSVVDAVKGIGDSVQTLNGSVDRVTH
                     SITHNISQNEDKISQVVQWSNVAMEIADKWQNRKSRRGSAAYKTNNVAADASRNASHN
                     GQSLSNEELVNNQYENKNINDFATNPSDVNTKYTTLNDTDSK"
     gene            complement(3643..4956)
                     /locus_tag="PTC08_000333"
     CDS             complement(3643..4956)
                     /locus_tag="PTC08_000333"
                     /EC_number="6.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002484970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate--L-alanine ligase"
                     /protein_id="HDK5681867.1"
                     /translation="MTRYHFVGIKGAGMSSLAQIIYDLGYEVQGSDIDQYVFTEIALK
                     NKGIQILPFDADNIKEGLTIIQGNAFKDTHEEIARAHELGLKVIRYHDFLSEVINEYV
                     SVAVTGAHGKTSTTGLLSHVMNGDKKTSFLIGDGTGMGLPQSEYFAFEACEYRRHFLS
                     YSPDYAIITNIDFDHPDYFKDVDDVINAFQGMAKNVKKAIIAWGDDPYVKNIEVDIPV
                     YYYGFDTSMDVYAQNIEVTGSGTEFDVYVKGEFYGHFVSPQYGDHNILNALAVLTISY
                     LENLNLDNIKEALITFGGVKRRFNETFAQNQVLVDDYAHHPREISATIETARKKYPNK
                     EVVAIFQPHTFSRTKAFLQEFADVLNLADQTYLCDIFGSIRENQGELSINDLLKLVDG
                     AHLIDENSVEQLQKHDNAVLLFMGAGDIQKILKAYMEKIGVEQQF"
     gene            complement(4985..8227)
                     /locus_tag="PTC08_000334"
     CDS             complement(4985..8227)
                     /locus_tag="PTC08_000334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA translocase FtsK"
                     /protein_id="HDK5681868.1"
                     /translation="MSWFDQLFGENDKDQSSQRSTRRRKSEATREEKHASFVQQSQDV
                     YQRPRGKFRFPIEMHDEVVERHHQQADTTQTQDVTMHTQLHERRPSFTVDRQHRRHRG
                     VQQARCYEQQQTRGSNSTHSNSHQNDYTFAAQSSQHSKKPKRHRDDIVAKPNYHQKPF
                     QASEVPSAIFGTKQPKKIENSGLNQPPGARKAMPQLQKNERVVQEATQQAESTTTRQN
                     RTTERSGTSKSPTRRHNTIHIENIYASQIVEEIRREREKKMLQKKNFKEALKKKRESY
                     EQHANPDIQKAIDEMYSAQARQLLGDQYTESTDETISEDLLNEETVDATTEQNKDATT
                     LTSNFEYEEVDLSEVESENHDESDSSTNEEIAENELDIEALSFEDESGISQVEDAQQH
                     RDTHAHTTTSDETTANKVETDASDIEFEVVEVDDDNALDDMITDETDGERIDSEIESD
                     SVDVDIEGEDVNEQQGQQVGSMPKLEPELKPELVQSNEALEKSVEKVTPQQNDTVTAE
                     QLSEATEVSQQTEQPKPYKVPIRKGSKPFNVVMTPSDKKRLMSRQQQAKKEEATVQPT
                     PRATEQPVRPVQPVEQQSSSQLTTQHVHNETHTRDSQQPQSQQEVKTIRRGPNLKLPS
                     LDLLEAPEEQEQDENWIAEKKEELNNAFYYFNVPAEVVNVVEGPSVTRFELSVERGVK
                     VSRITALQDDIKMALAAKDIRIEAPIPGTSLVGIEVPNPHTTKVNISSILSHPAFKNA
                     ESKLTVAMGNRINNEPLLMDIAKTPHALIAGATGSGKSVSINSILISLLYRNHPEELR
                     LLLIDPKMVELAPYNGLPHLVAPVITDVKAATQSLKWAVDEMERRFKLFAHHHVRNIS
                     AFNNKVNYDQRIPKIVIVIDELADLMMMAPQDVEQSIARLAQKARACGIHMLVATQRP
                     SVNVITGLIKANIPTRIAFMVSSSVDSRTILDSGGAERLLGYGDMLYLGSGMNKPIRV
                     QGTFVSDEEIDQVVEFIRAQREPEYLFQEKELLEKNDAPSRDELFDEVCQFMVREQHI
                     STSLIQRHFQIGYNRAARIIDQLEQLGYISGANGSKPRDVYLTESELSEL"
     gene            complement(8247..8846)
                     /locus_tag="PTC08_000335"
     CDS             complement(8247..8846)
                     /locus_tag="PTC08_000335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4479 domain-containing protein"
                     /protein_id="HDK5681869.1"
                     /translation="MNLFFNPTGVGNVAFLQLEQGEGPFEYERHGDVVAIKDNQKIVG
                     FNLFEATNHLNIEGIGHIKLTETLLTEIQKMIDHTDLDYQIEVDLSPKFVVGYVQSKE
                     KHPNADKLSIVQVDVGTETLQIVCGAPNIDQGQKVVVAKVGAVMPSGMIIKDAELRGV
                     PSSGMVCSMKELNLPNAPQEKGIMVLDDHYQVGQPFFDE"
     gene            complement(8852..9718)
                     /locus_tag="PTC08_000336"
     CDS             complement(8852..9718)
                     /locus_tag="PTC08_000336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1444 domain-containing protein"
                     /protein_id="HDK5681870.1"
                     /translation="MNVFKMRDLIKSRLTHLEVDYQFNRDEESLRIYRQDNHKGITVK
                     LSPVVAKYNKGQEKIVDEIIYYVEETIQQMKDESHKTLDEIRVMPVIRATSFDQQTKE
                     GKAFITEPHTAETRVYYALDLGKSYRLIDEDLMQSLNLSQQQLKEMAMFNVRKLNNSF
                     TTDEVKGNIFYFINKNDGYDASRIMNAKLLAEFEERCEGEMLVAVPHQDVLLIADIRN
                     KTGYDIMAHMTMDFFAKGLVPITSLSFAYENGHFEPIFILGKNNKQKPNENPNVVHHL
                     RATKDINNNNEE"
     gene            complement(9811..10119)
                     /locus_tag="PTC08_000337"
     CDS             complement(9811..10119)
                     /locus_tag="PTC08_000337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HDK5681871.1"
                     /translation="MIQLESEQQFKDFANDNTVFLFSANWCGDCRVIEPGLPELEEKY
                     AQFKFVKVDRDEFIDLAIEHDIMGIPSFLVYQNGQQVGSYIGKERKTIEQIDTFLSQF
                     "
     gene            complement(10131..11198)
                     /locus_tag="PTC08_000338"
     CDS             complement(10131..11198)
                     /locus_tag="PTC08_000338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M42 family metallopeptidase"
                     /protein_id="HDK5681872.1"
                     /translation="MSNHTIDKIKTLTEMHGAPNFEQHVREYMKKMMAPYVDTFVDDR
                     MGGFYGVKRSGKPNAKRVMVAAHMDEIGFMITEVTPQGFIKFTALGGVANDIWQGQRL
                     KIMTQQGEEIIGVVANIPKHFRSGQEQAPRIEDLLLDIGESDADAVYNRGIQIGDAIV
                     PYTELLQLSEYRYAAKAWDNRYGCVIALELLEQLKDVTLDFDLYVGANVQEEVGLRGA
                     EVAARLVDPDVAFVVDCSPANDMKGRQGLSGVLGEGALLRIKDGTMLLKPAFKTFLQD
                     VALRHDVMYQHYISPGGTDGGAIHKANIGVPTAVIGVCARYIHSTDAVFDIRDYQAAK
                     TWLTASIQTLNLETIEQLQYQ"
     gene            11294..11611
                     /locus_tag="PTC08_000339"
     CDS             11294..11611
                     /locus_tag="PTC08_000339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5681873.1"
                     /translation="MISKKNWPLLIPILILSLLAGSYFYALNMNKQKYISADKVIQSV
                     KGYFRHVTGSYILYEPTTYRKFGIEYEVYKGGITAERHGKTFNYEFIADAYNGQIIDI
                     IEI"
     gene            complement(11678..12511)
                     /locus_tag="PTC08_000340"
     CDS             complement(11678..12511)
                     /locus_tag="PTC08_000340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HDK5681874.1"
                     /translation="MQLGKLQIDPLNGGFTQMDGGAIFGVVPKPLWEREYPVNDKNQV
                     PLTTSPILIRTEDKNILIDTGIGKGKLTEKQLRNYGVRYESDIDASLAQFSLTCEDID
                     IVLMTHMHFDHATGLTDANGQAQFPNAWHYVQQDEWYEFIAPNIRSQATYWPINRGTY
                     EANLILFEDTIEPYPGIKMKHTGGHSFGHAVIEIESEGEKAVHMADILSTTAHRNPLW
                     VSAYDDYPMQSIREKERLTRYYVAHQYWFLFYHDVQHFAAKLSKDLKSVEASILREHV
                     D"
     gene            complement(12783..13436)
                     /gene="trmB"
                     /locus_tag="PTC08_000341"
     CDS             complement(12783..13436)
                     /gene="trmB"
                     /locus_tag="PTC08_000341"
                     /EC_number="2.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(46)-N7)-methyltransferase TrmB"
                     /protein_id="HDK5681875.1"
                     /translation="MRMRNKPWAESYLTEHNDIVDLEAVHAHQVSEWFERQQPIHIEV
                     GSGMGKFITTLAQQNPHINYVAIERDKNVMIRVLDKVREHNLTNIKLLCNDAVILTDY
                     FRQGEVDRIYLNFSDPWPKKRHAKRRLTYRSFLALYQQILREDGELHFKTDNRGLFAY
                     SLESMSQFGMYFTKINLNLHQEDEGDNIPTEYEHKFAEKGSRIYRMEAKFHSKQTTE"
     gene            complement(13452..14243)
                     /locus_tag="PTC08_000342"
     CDS             complement(13452..14243)
                     /locus_tag="PTC08_000342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001602611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase family protein"
                     /protein_id="HDK5681876.1"
                     /translation="MEQFYQLGWTLDSAGGASGEAYMAEQDGQKLFLKRNSNPFIAAL
                     SAEGIVPKLVWTKRIETGEVVTAQHWKNGRELESQEMAQNRVAHLLKKIHQSKPLLTM
                     LKRMEMAPITPEIMLHKINASLSRDVLTHHIVRKALTYLEDHMPEFDPRFYTVVHGDV
                     NHNNWLLSDKDELFLVDWEGAMIADPAIDIGMLLYNYVPEAQWSSWFDTYEVKETMNL
                     KKRMKWYTVIQSIGMIQWNEEHKRYKDMNTWLKFLNEVMKSNVFI"
     gene            complement(14476..15324)
                     /gene="dat"
                     /locus_tag="PTC08_000343"
     CDS             complement(14476..15324)
                     /gene="dat"
                     /locus_tag="PTC08_000343"
                     /EC_number="2.6.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-amino-acid transaminase"
                     /protein_id="HDK5681877.1"
                     /translation="MTKVLINESFVEESEAKVAFNDRGYNFGDGIYEYVRIYDNKLFT
                     AKEHFERLLRSASEIGLELNYTVESLTELVRELAQVNNVTNGGVYMQVTRGAAPRDHA
                     FPTPSVEPVLTAFVKSYDRPFKALEEGVSVVTTDDIRWLRCDIKSLNLLGNVLAKEYA
                     TKYNATEAIQHRDGTVTEGASSNVYAIKDGVVYTHPANNLILKGITRQVIKWICDDEQ
                     ITFKDEAFSLAFLKDADEVIISSTSAEVMPVVKIDGEVVNDGEVGPITRRLQEGFERY
                     IHSHSH"
     gene            complement(15328..16737)
                     /gene="pepV"
                     /locus_tag="PTC08_000344"
     CDS             complement(15328..16737)
                     /gene="pepV"
                     /locus_tag="PTC08_000344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptidase PepV"
                     /protein_id="HDK5681878.1"
                     /translation="MWREKVQEYETQMIEDLKGLLAIKSVRNDTEATEDAPVGPGPKA
                     ALEYMYQLAERDGFNTFDTDHLAGRIEIGKGEELFGILGHVDVVPAGDGWDSDPFDPV
                     ETDDRIIARGTLDDKGPTIAAYYAVKILNDMNVDWKKRIHIIIGTDEESEWKCTERYF
                     KTEEMPTIGIAPDAEFPLIHGEKGITTFTIKQKTLTLDDDEPEIELKQFASGERFNMV
                     PDVANADILVKENMTDTIQRFEAFLSEHQLEGHHEIDSGILKLTVFGKAVHGMDPSIG
                     VNAGLYLIHFLNTLNLNQSAQSWTAFGEKYLFDSHFGEKMGMKFHSDSMGDLTTNIGV
                     IRYDLDEGGSFGINLRYPEGFDFDRAISDFTAEIQALGFDIEGLKVQTPHFVNPEDPF
                     VQKLLTAYRNQTGDMRPSFTIGGGTYARNLDKGVAFGAMFEDSEDLMHQKNEYITKKQ
                     LFNAMSIYLEAIYAVCVEG"
     gene            complement(17060..17458)
                     /locus_tag="PTC08_000345"
     CDS             complement(17060..17458)
                     /locus_tag="PTC08_000345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YtxH domain-containing protein"
                     /protein_id="HDK5681879.1"
                     /translation="MAKSGKLFKAILGIGGAVAAVVLSNKQNRENLKQEYQKYKENPE
                     DYKKRAQEKAAQVSEAATQEFNKVKEDPKAYINEAKQDPKSFINEKKEQLLNSEQQDN
                     LDDREALFDDEGGGDSSHNLHVVRDNEPNK"
     gene            complement(17542..18240)
                     /locus_tag="PTC08_000346"
     CDS             complement(17542..18240)
                     /locus_tag="PTC08_000346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA pseudouridine synthase"
                     /protein_id="HDK5681880.1"
                     /translation="MRIDKFLAQMGVGTRTEVKALLKKGHVLHNGAKIKSSKTQIDPE
                     HDVVEVKGRVIAYEPFVYLMMNKPQNVISATVDDQHQTVIDIIEGYRHLDLFPVGRLD
                     KDTEGLLLITNDGQFNHALMNPNKHVSKTYWVKAKYALKTNDPKRFEEGITLKEGRLQ
                     PAHLEILDDSMTAFVTIQEGKYHQVKRMFHAIDNEVVGLKRVSIGDLTLDSSLSPGAY
                     RSLTEDELKLLNYR"
     gene            complement(18240..19874)
                     /locus_tag="PTC08_000347"
     CDS             complement(18240..19874)
                     /locus_tag="PTC08_000347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis protein"
                     /protein_id="HDK5681881.1"
                     /translation="MSENKELVRGTFLLTLSILITKVLGIIYVIPFYQIIGGADNLAP
                     FNYAYGPYNVAIAVATAGVPLAASKYVAKYNTLGAYRVSQKLYKSSFIVMSITGILGF
                     VILYLLSPMIASVTIAHNMDKNAGWTVDQITAIIRTISFVVIFIPVLATWRGVFQGYK
                     SMGPTALSEVTEQIARIIFILVGSYLVLNVFDGSVLLANGIATFGAAIGAIAGILTLW
                     WYWIKRRRGIHEMVASDMTGIDVSYSKMYKEILSYSIPFVIVSLNFPLFMIVDQLTHN
                     NALSIAGVETSLQGTFFTMLNMTTNKIVMIPTSLAAGFAISLIPFITKTYEKGDYVEM
                     HRQIRTSLGVLMYITVPASLGIMALAVPLYTVFYEYSMDGSRLLFYYAPVAILISLLS
                     VTASMLQGIDKQKLTVFVIVGSVVLKFILNMPLIIMFETAGAILSTAIALTFAIVCNF
                     FILKKYARFKFNETIIDVCKILLYSFMMMIIVEIIYFGFQFVISPASHVGAFIITVIC
                     AIVGVIIYAVLTMKTRLADKFLGEIPNKIRRKVSFL"
     gene            19991..21247
                     /locus_tag="PTC08_000348"
     CDS             19991..21247
                     /locus_tag="PTC08_000348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HDK5681882.1"
                     /translation="MYQTIVIGGGPSGLMAAISSSQNGQPVLLLEKKKGLGRKLKISG
                     GGRCNVTNNLPYAEIIQHIPGNGKFLYSPFSIFDNQSIIEFFESRGVALKEEDHGRMF
                     PVSNQSQDVLDALIRELKQNKVTVKEEQTVVDVKKVDSDHFQVQLQDGDTYKAKTVII
                     ATGGTSVPQTGSTGDGYRFAQSLGHHITELFPTEVPIKSNAPFIKNQSLKGLSLKNVG
                     LSVLKKNGKKRITHQMDMLFTHFGISGPAALRCSQFIYHEQKSQKQQNIQMQIDAFPE
                     INEEALKQKITKQLKSQPDKHIKNALKGLIEERYLTLIIDSAGIPFETTYHHISAQQL
                     STLAHQFKAFTFEVYGTLPLEKAFVTGGGVSIKEIVPTTMESKITPGLYLCGEVLDIH
                     GYTGGYNITSALVTGYVAGYFAGFVE"
     gene            complement(21879..22190)
                     /locus_tag="PTC08_000349"
     CDS             complement(21879..22190)
                     /locus_tag="PTC08_000349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HDK5681883.1"
                     /translation="MKEITTDELKEIVLSSEPVNIVDVREDGEVAMGMIPNAEHIPMN
                     DIPDHVDDFKKDTTYYIVCAGGVRSAKVVAFLNDHGIDAVNVEGGMRAWGEEGLEFKR
                     I"
     gene            complement(22217..24631)
                     /locus_tag="PTC08_000350"
     CDS             complement(22217..24631)
                     /locus_tag="PTC08_000350"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HDK5681884.1"
                     /translation="MVSYNHQEVEKKWQTYWLENKTFKTEDNIGQKKFYALDMFPYPS
                     GAGLHVGHPEGYTATDILSRYKRMQGYNVLHPMGWDAFGLPAEQYALDTGNDPAEFTK
                     RNIQTFKRQIQELGFSYDWDREVSTTDPEYYKWTQWIFIQLYKKGLAYIDEIPVNWCE
                     ALGTVLSNEEVVDGVSERGGYPVVRRPMKQWVLKITEYADRLLEDLDTLDWPESIKDM
                     QRNWIGRSEGAKVNFKVENINTPIEVFTTRPDTIYGATFLVLSPEHTLVNRITTPQQY
                     EKVKHYQDEAAKKSDLERTDLAKEKTGVFTGAYAIHPFTGKQVPIWIADYVLASYGTG
                     AVMAVPAHDERDYEFATTFDLPVVTVIENDAETPYYTGDGAHVQSGELDGLNNEAAIA
                     KAIELLEAKGLGEKKVNYKLRDWLFSRQRYWGEPIPIIHWEDGSMTTVPENELPLLLP
                     KTDEIKPSGTGESPLANIDDFVNVVDPETGMKGRRETNTMPQWAGSCWYYLRYIDPKN
                     DQMLADPEKLKHWLPVDLYIGGVEHAVLHLLYARFWHKVLYDLGIVPTSEPFQKLFNQ
                     GMILGEGNEKMSKSKGNVVNPDDIVRSHGADTLRLYEMFMGPLEASIAWSENGLDGSR
                     RFLDRVWRLFVTEDSQLTDKVIEGDTPALQTVYHQTVKKVTEDFESLSFNTAISQLMV
                     FINECYKADNISKAYAEGFVKMLAPIAPHVGEELWSILGHDTTITYQPWPSFDPSLLE
                     EDVVEIVVQVNGKVRAKIEIPKDMSKADMEATALANDNIKAAVEGKDVKKVIAVPQKL
                     VNIVAK"
     misc_binding    complement(24679..24870)
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00230"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="T-box leader; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="tRNA"
                     /db_xref="RFAM:RF00230"
     gene            complement(24940..26121)
                     /locus_tag="PTC08_000351"
     CDS             complement(24940..26121)
                     /locus_tag="PTC08_000351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDK5681885.1"
                     /translation="MNMPKEIWWLVIGMAINITGASFLWPLNTIYMNEELDKSLSTAG
                     LVLMVNSFGMIVGNLLGGTLFDKLGGYRTIMLGTIVSLCATILLNFFHGWPWYAIWLI
                     MLGFGGGMIIPAIYAMAGAVWPQGGRQTFNAIYLAQNIGVALGAALGGFVAELSFNYI
                     FMANLAMYVIFFFIALFQFNMDYQATVKHQETLENVAHIQNKKHFTALILLCVMFALC
                     WIAYVQWQTTIASFTQSIGISMSQYSLLWTVNGVLILVGQPLILPIIHLIKGQLKKQL
                     YFGLVVFILSFFVTSFATSFSIFVVGMVIMTFAEMFVWPAVPTIANNLAPKGREGVYQ
                     GIVNSASTVGKAFGPLVGGILVDVFNMQIMFLSMIGLLVIAMAFLTIYDRKVDPKTLY
                     R"
     gene            26269..27222
                     /locus_tag="PTC08_000352"
     CDS             26269..27222
                     /locus_tag="PTC08_000352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613608.1"
                     /note="This family includes YhcC from E. coli K-12, an
                     uncharacterized radical SAM protein; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01212 family radical SAM protein"
                     /protein_id="HDK5681886.1"
                     /translation="MGTYFPYAFEKKRYHTLNYHLKNKFGQKIFKVALDGGFDCPNRD
                     GTVAHGGCTFCSAAGSGDFAGNRADAIEVQFKEIKNKMHEKWHEGQYIAYFQAFTNTH
                     APVAVLREKFEAALKEPGVVGLSIGTRPDCLPDDVVDYLAELNERTYLWVELGLQTIH
                     QETSDLINRAHDMDCYYEGVAKLRRHNIKVCSHIINGLPGEDYDMMIETAKAVAQMDV
                     QGIKIHLLHLLKGTPMMKQYDKGLLEFMTKEQYIQLVCDQLEQLPPEMIVHRITGDGP
                     IDLMVGPMWSVNKWEVLNEIDAELERRGTVQGASYSSQVHI"
     gene            27219..27782
                     /locus_tag="PTC08_000353"
     CDS             27219..27782
                     /locus_tag="PTC08_000353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDK5681887.1"
                     /translation="MIVERILPFAKSLIRSHTTSESVVIDATCGNGHDTKFLADLVPH
                     GHVYGCDIQQEAIENTKQRVHDYNNVSLFHTGHEWITQYIRDEHLTQVHAAIFNLGYL
                     PKGDKSIVTQSTTTLAAVQTIFDILQPEGIIVLVVYPGHEEGKEESMTLMKHLAAFDQ
                     QRAHVLKYEFINQQNRPPYVIAIEKRA"
     gene            complement(28285..28695)
                     /locus_tag="PTC08_000354"
     CDS             complement(28285..28695)
                     /locus_tag="PTC08_000354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HDK5681888.1"
                     /translation="MTEKNNYKVSDIMRLDQLQKEVEAIFEEIEGKYRLSKEEFLILL
                     TLWDQGSMTLKEMDDYVKVKTYKRTRTYNNLVEMKWIVKERPTNDERTVIIHFNEDKE
                     ADKQDLINFTCMEIEKRDAHLRTLLNDIVNGCDI"
BASE COUNT         8423 a         6054 c         4777 g         9447 t
ORIGIN      
        1 ttcaaagtgt atcataattt caatgatcaa aacatctaaa acgctttctt gtcattgatt
       61 tgtcaaattt atatcaagct ttatttttag caaattcatt ttttataaca aaaataatga
      121 taaatcatgc actgtgagga tacgaatgat atccatattt gatggtatga tgtttgtaaa
      181 cagaaggtcg tacgattgga aatcatatca ctgcaatttt acacatagaa aaactttaat
      241 ttaaagcact taatcaaatg tcacgatttc ttttatacat atcaatagac aaataaaaag
      301 gacaagctcc tacgcacatt gtaggatttt gccctttttt caatcaacct attatttcaa
      361 ttttttctca ttgtacatat cagctaaagg tttgatcaca ttgtagaatt cattgaactc
      421 gtttaagtcc atttgttgac cactatcact taaagcaact gcaggttctg gatgtacttc
      481 tgccattacg ccgtcagccc ctactgcaag tgctgctttc gctgctggta acataatgtc
      541 tttgcgacct gtgctgtgcg tcacatcaac catgactggt aaatgcgtac cttgtttcaa
      601 gattggcact gctgaaatat ctaatgtgtt acgtgttgct ttttcgtatg ttcgaatacc
      661 acgttcacat aaaataatat tttggtttcc ttctgatgca atgtattctg cagcgtatac
      721 aaactcttca atcgttgcag acaagcctcg ttttaataaa attggtttac gtgtacgacc
      781 tgcttctttt aataattcga agttttgcat gttacgcgca ccaatttgga aaacatccaa
      841 gtattgatca gcaagctcaa aatcgtttgg atgaacaatt tcactgacaa cattaaggtc
      901 atatttatct ttcatttgtt taagtatttt taatccttct tcaccgaggc cctggaagtc
      961 atacggtgat gtacgcggtt tgaatgcgcc gccacggata aatttttcgc ctttcgcttt
     1021 caagtcttta gccactgcat cgatttggtc ataagattca accgaacatg gaccgaagac
     1081 aaacgatttt tggccttcac caataatacc accattatca aaatgtacaa tcgtatcctc
     1141 aggttttaac ttacgtgaga catacaaatg tttttcatta tctgattttt gtaaatctgt
     1201 tgaggcttta aaaatttctt taaacagttg tttaattaca ttatcattaa atgggccctg
     1261 gtttttatca atcagcgtgt tgagcatttc tttttcacgt tgaggatcat aaattacagt
     1321 gctttgtttg cgtttttcct caccgatttt ttgtgctaac tcgcctcgtt ttgataataa
     1381 gtccaaaatt tgatcattaa tgtcttcaat ctgttttctg tacgtttcta atttacttgt
     1441 catcattttt caccccaacc atttttctaa cttgctttaa agcagtaaaa tttaaaagta
     1501 gatattgagt atactaacaa taatatgtag cattttcaac cttttacgct taatttggtt
     1561 aaaatatttt tctagtatgt tataaaatgt aaagtatcca ttgtcatatg tcaatgaaca
     1621 gaaactttgt tgtttaattc tcatattatg tattttgaaa attaagataa ctaaaaatag
     1681 taaaaagttg agcttatgag atcatatatc gctcacaagc tcaatgagat attaagttat
     1741 cattttatca tacacttcac gattaatcgt taaatgtatg cttttctact ttttgatttg
     1801 tttttttagc tttttccgtt acttttttac taccatttgt tttcttagat gacgttgctt
     1861 ttttggcagt tgaagtgctg tttgattttg acgttgaagc cgatgcttta gttttgctag
     1921 ctgttggttg atcgtttgca atttttgtag caccttgttg tgacgtagtt ttttctgttg
     1981 tcgcaccttg acgatcgtgt gtaattacac cgttctcaaa tgtggcttga ctgtgtgaat
     2041 tttttggtac tgctgcagtt gggtctgctt ttacagcgtc gactgttttt ccttgatcgt
     2101 tcacttgtgc attcgtactt tgacctttgt cttgtaaacg gtccgaatcg acttcactac
     2161 gaatggcgcg ctgttgagct tttactgtac tgtcttgagt tgactgcgct tcagattcac
     2221 ctttatcact cacttttaca tttgcatctt tgccacgtac agacgtatct tgcaaacggt
     2281 ctgaatccac ttcactttga atcgcacgtt gttgtgcagc tactgtacta ttctctgttg
     2341 atggcgttga tagcgctgat gcttcagtct cttgttgctt ttgagattgt ctttgatttg
     2401 cagcttgagc caaacctgtt gccgttacag cttctgtcgt tgatgtcgca acagttgttt
     2461 ctgaagtcga tggttcacgt ggtgtttgac cttctaatcg atctgagtcc acttcattac
     2521 gaatggcacg ttgttgtgct gacaattcat cagctgtcgg ttcgtccgtt gatgtttttg
     2581 attcttctct aacacggcgc gcttgtgctt ttaatgcttc tgctttacgg attgcttctt
     2641 ccttaagtgc agaagatggc tcagcattta ctgtttgttg tgaactttta cgtcgttgtt
     2701 gtgcagaacc tggttttaaa attaatccta gtgcacttcc taaaacagcg ccagcaacaa
     2761 agccaaatac aaagtctaaa ggcttatatc ctggttcgta ctggggaact tcatagcttt
     2821 ctaaaccttt cgtatataaa tcacggttat atttttccat cttctatttg cgcctcctat
     2881 aataaatgca cttaaatcaa gtatgaaaac tcatttaagt gcattctgtt taaagcttat
     2941 ttaacatgac aacacttatt ttgaatctgt gtcattcaat gttgtgtatt ttgtgtttac
     3001 atcactcgga tttgttgcga aatcgttaat gtttttgttt tcatattggt tgtttactaa
     3061 ttcttcatta gataaagatt gaccattatg gcttgcatta cgacttgcat cagctgctac
     3121 gttgttcgtt ttgtatgctg cactaccgcg acggcttttt ctattttgcc atttgtcagc
     3181 gatttccatt gcaacgtttg accattgaac aacttgtgaa attttgtctt cattttgaga
     3241 aatgttatgc gtgattgagt gtgttactcg atcaacagaa ccatttaatg tttgtactga
     3301 atcaccaata cctttaaccg catctacaac agagtttaag cgattggctt tgtcttgaac
     3361 gtcttcagtt aaacgattcg ctttgtgtaa caagtctgtt gactcacgtg taatcccttg
     3421 aatctgacct tccacaccat caagtgtttt agccacatga tccaagttct ttttaacaga
     3481 aaccaataca gcaacgatac cgattgctaa aataagaaaa gcaattgctg cgatgattcc
     3541 cgcgataggt aaaatccatt ccattcctaa acgcctccta attgacttaa aataatatgc
     3601 tatttatttt aattaaatac ccaacctatg cgaactcaaa cattaaaact gctgttcaac
     3661 accaattttt tccatgtatg ctttaagaat tttttgaata tctcccgcac ccatgaataa
     3721 aagtacagca ttgtcatgtt tttgcagttg ttccacacta ttttcatcaa tcaaatgcgc
     3781 gccatcgact aattttaata aatcattaat agacaactcg ccttgatttt cacgaattga
     3841 accaaatata tcacagagat acgtttgatc agcaaggttt aacacatctg caaactcttg
     3901 taaaaatgct ttcgttcttg agaaagtatg tggttggaaa atagccacta cttctttatt
     3961 tggatatttt tttctagctg tttcaattgt agcactaatt tctctcggat ggtgtgcata
     4021 atcatcaacc aacacttgat tttgagcaaa tgtttcatta aagcgacgtt tcacgccacc
     4081 aaaagtgatt aatgcttctt taatgttatc aagatttaag ttttcaagat aactaatcgt
     4141 taataccgct aatgcattca aaatattgtg atccccatat tgcggtgaaa caaaatggcc
     4201 atagaattcg cctttaacat aaacatcaaa ttctgtacca ctacctgtca cttcaatatt
     4261 ttgtgcataa acatccatcg acgtatcgaa accatagtaa tacactggaa tatctacttc
     4321 aatattttta acgtatggat catcgcccca tgcaataatc gcttttttaa catttttcgc
     4381 cataccttgg aatgcattga tgacatcatc tacatcttta aagtagtctg gatggtcgaa
     4441 atcaatgttc gtaatgatgg cataatccgg tgaatagctt aaaaagtgac gtcgatactc
     4501 acacgcttca aatgcaaaat attcactttg cggcaagccc atgccagtcc catcgccaat
     4561 taaaaaggat gtctttttat ccccattcat gacatgagaa agtagccccg ttgtagatgt
     4621 tttaccgtga gcacctgtca ctgccacaga aacatattca ttaatcactt cacttaaaaa
     4681 gtcatgatag cgaataactt ttaatccgag ttcatgtgcg cgagcgattt cttcatgggt
     4741 atctttaaag gcattacctt gaatgatcgt tagcccttct ttaatattat ccgcatcaaa
     4801 aggtaaaatt tgaatgcctt tattttttaa tgcaatttca gtaaaaacgt actgatcgat
     4861 gtctgatcct tggacctcat aaccaagatc ataaataatc tgtgctaatg agctcatacc
     4921 agcaccttta ataccaacaa aatggtatcg tgtcattgtg tcatcgctcc tttctctatt
     4981 tccattaaag ctcacttaat tccgactctg tcaaataaac atcacgtggt ttagaaccat
     5041 ttgcccctga gatataaccc aattgttcaa gttgatcaat aatgcgtgct gcacggttat
     5101 aaccgatttg gaaatggcgt tgaattaatg acgttgaaat gtgctgttct ctcaccataa
     5161 attggcacac ttcatcaaag agttcatctc tgctcggtgc atcatttttt tctaacaact
     5221 ctttttcttg gaataagtat tctggctcgc gttgcgcacg tatgaattct acaacttgat
     5281 caatttcttc atctgataca aacgtgcctt gtaccctaat cggtttgttc ataccacttc
     5341 ctaaatacag catatcgcca taaccaagta aacgttcagc accgccacta tctagtattg
     5401 ttctagagtc cacactagat gataccataa atgcaatacg agttggaata tttgctttaa
     5461 ttaatcctgt gatgacgttc actgatggac gttgagtcgc aacaagcata tgaatcccac
     5521 aagcacgtgc cttttgagct aatcgcgcaa tagattgttc gacatcttgc ggtgccatca
     5581 tcatcaggtc agccaattca tcaatcacga tgacaatttt tggaatacgt tgatcataat
     5641 ttactttgtt attaaatgca gaaatgttac gaacgtgatg atgtgcaaac aatttaaaac
     5701 gacgttccat ttcatcgaca gcccatttca aactttgagt tgcagctttc acatcagtaa
     5761 tgacaggcgc aaccaaatgt ggcaagccat tatacggtgc aagctctacc attttagggt
     5821 caataagtaa cagtctcagc tcttctggat gattgcgata caataaggaa attaaaatac
     5881 tgtttatcga tacagatttt cctgaacctg tcgcacctgc aattaaggca tgcggtgttt
     5941 ttgcaatatc catcaacaat ggttcattat taatacgatt ccccatcgcc actgtcagtt
     6001 tagattctgc atttttgaac gccggatgac ttaaaataga actaatattc acttttgtgg
     6061 tatgtggatt tggcacttca attccgacta aacttgtacc tggaatcggt gcttctatac
     6121 gaatatcttt tgctgccagt gccatcttaa tatcgtcttg caatgcagta atgcgcgaaa
     6181 ctttgacgcc acgttccacc gacaattcaa aacgcgtcac acttggtcct tcgacaacat
     6241 ttacgacttc tgcaggtaca ttaaagtagt aaaatgcgtt gttcaactct tcttttttct
     6301 cagcaatcca attttcatct tgttcttgtt cttcaggtgc ttcgagcaaa tcaaggctcg
     6361 gtaacttcaa gtttggacca cggcgaatcg ttttcacctc ttgttgtgac tggggctgct
     6421 gactgtctct cgtgtgcgtt tcgttatgta catgttgcgt tgtcaattga gatgatgatt
     6481 gttgttcaac tggttgtaca ggacgcactg gttgctcagt tgctcttggc gtaggttgca
     6541 cagttgcttc ctcttttttc gcctgttgtt gacgtgacat cagtctcttt ttatctgaag
     6601 gtgtcatgac gacgttaaac ggtttgctac cttttcgaat cggtacttta tacggcttcg
     6661 gttgttcagt ctgttgggat acttcagtcg cctcagacag ttgttccgct gttaccgtat
     6721 cattctgttg tggcgtcact ttttcaacag acttctcaag cgcttcatta gattgtacaa
     6781 gttctggctt caactcaggt tcaagtttcg gcatggagcc aacctgttgt ccttgttgtt
     6841 cgtttacgtc ctcaccttct atgtctacat ctactgagtc gctttcaatt tcactgtcaa
     6901 tacgttcacc atccgtttca tcagtgatca tatcatcaag tgcgttatca tcatcaactt
     6961 caacgacttc aaactcaata tccgaagcgt cagtttcaac tttgttcgct gtggtttcat
     7021 ccgatgttgt tgtgtgcgca tgagtatctc gatgttgttg tgcatcttcc acttgagata
     7081 tacccgattc atcttcaaac gacagcgctt caatatctaa ttcattttca gcaatctctt
     7141 cattcgttga cgagtcactc tcatcatgat tttctgactc aacttccgat aaatcgacct
     7201 cttcatattc gaagttagac gtcaatgtag tggcatcctt attttgttca gttgttgcat
     7261 ctactgtctc ttcgttgagt aaatcctcag agatggtttc atcagtcgat tcagtatact
     7321 ggtcacctaa caattgacgt gcttgtgcag aatacatttc atcaatcgct ttttgaatat
     7381 cgggatttgc atgttgttca taagattccc gtttcttttt aagcgcctct ttgaagtttt
     7441 tcttctgcaa cattttcttt tcacgttctc gacgtatctc ttctacaatt tgagaagcat
     7501 aaatattttc gatatgaatt gtgttatgac ggcgtgttgg tgattttgat gtcccagaac
     7561 gttctgttgt tcggttttgt ctcgttgttg ttgactctgc ttgttgtgtt gcttcttgga
     7621 ctacacgttc attcttttgc aactgaggca tagctttacg tgctccaggt ggttgattca
     7681 atccactgtt ttcaattttt tttggttgtt tcgtaccaaa aatagctgac ggtacttcac
     7741 tcgcttggaa tggtttttga tgataattcg gcttagcaac aatatcatca cgatgacgtt
     7801 ttggtttttt tgaatgttgt gaagattgtg cagcgaatgt atagtcgttc tgatgagaat
     7861 tactatgcgt tgaatttgaa ccacgtgttt gctgttgttc atagcaacgc gcttgttgta
     7921 caccacgatg tcgacgatgt tgacgatcaa cagtaaagga aggacgtcgc tcgtgtagtt
     7981 gtgtatgcat ggtcacatct tgtgtttgcg tcgtgtctgc ttgttgatgg tgacgttcaa
     8041 ccacttcgtc atgcatctca atcggaaaac gaaacttccc acgagggcgt tgataaacat
     8101 cttgactttg ttgaacgaaa gacgcatgtt tttcttcgcg cgttgcttca ctttttcttc
     8161 ttcgtgttga acgttgtgac gattggtctt tatcattctc accaaataat tgatcaaacc
     8221 agctcattta atttcacaac cttcctctat tcatcaaaaa atggttgacc tacttgataa
     8281 tgatcatcta ataccataat gcctttctct tgtggtgcat tcggtaaatt caactctttc
     8341 attgaacata ccattccact tgaaggtaca cctcttaatt cagcatcttt aatgatcatt
     8401 ccacttggca ttaccgcacc tacttttgcg acaacgacct tttgaccttg atcaatatta
     8461 ggtgcaccac aaacaatttg taatgtttca gtaccaacat ctacttgaac aatgcttaat
     8521 ttgtcagcat tcgggtgttt ttctttcgat tgaacataac ctacgacaaa ttttggtgac
     8581 aagtctacct caatttgata atcaaggtcc gtatgatcaa tcatcttttg aatttctgta
     8641 agcaacgtct ccgtcaattt aatatgcccg atgccctcaa tattcaaatg atttgtcgct
     8701 tcaaataaat taaaacctac aattttttga ttgtctttaa tagcgacgac atcaccgtga
     8761 cgttcatatt caaatggccc ttcaccttgt tcaagttgta aaaatgccac atttcctaca
     8821 ccagttggat taaaaaacaa attcatcttc attactcctc attgttattg ttaatatctt
     8881 tcgttgctcg tagatgatga acaacgttag gattttcatt cggtttttgt ttattatttt
     8941 tacctaaaat aaatatcggt tcaaaatgac cgttctcata ggcaaaagaa agtgatgtaa
     9001 ttggtacaag cccttttgcg aaaaaatcca tcgtcatgtg tgccataata tcgtaacctg
     9061 ttttattacg aatatctgca atcagcaaca catcttgatg aggaaccgca acaagcattt
     9121 ccccttcaca ccgttcttca aattcagcta ataattttgc attcataatt cgacttgcat
     9181 catagccatc atttttatta ataaaataaa aaatgttccc tttgacctca tcagtcgtaa
     9241 atgaattgtt taattttcta acattaaaca tcgccatttc tttaagttgt tgctgggaca
     9301 aatttaaaga ctgcattaaa tcttcatcaa tcaaacgata tgactttccg agatcgagtg
     9361 cataatacac gcgtgtttca gcggtatgag gttcagtaat aaatgccttc ccttctttcg
     9421 tctgttgatc aaaacttgtc gcacgaatca caggcatgac acgaatttca tctaatgttt
     9481 tatgtgattc atctttcatt tgttgaatcg tttcttctac ataataaata atctcatcaa
     9541 caatcttttc ctgtccttta ttatatttgg caacaactgg agaaagttta acagtgatcc
     9601 ctttatgatt atcttgtcga taaattctta atgattcttc gtcgcgatta aattgataat
     9661 ccacttctaa atgtgttaat cgcgatttga ttaagtctct cattttaaag acattcatgt
     9721 tttcactcct aattacacgc cttatattag tttacaataa atataccctt aggactagaa
     9781 aaaaaccatg tcctaagggt taaaatctca ttaaaattga ctgagaaatg tgtcaatctg
     9841 ttcaattgtt tttctttctt taccaatgta tgaaccgact tgttgtccat tttgatatac
     9901 gaggaagctt ggaatgccca taatatcatg ttcaatcgct aaatcgataa attcatcgcg
     9961 gtcgactttc acgaatttaa actgtgcata tttctcttct aactctggta atcctggttc
    10021 aatgacacga cagtcaccac accaatttgc gctaaataaa aatacagtat tgtcgttagc
    10081 aaagtcttta aattgttgtt cgctttctaa ttgaatcatc ttcgtcactc ctattggtat
    10141 tgtaattgtt ctatcgtttc aagatttaat gtttgaatcg atgccgttaa ccacgttttt
    10201 gcagcttgat aatctcgaat atcaaatacg gcatccgtac tgtgaatata gcgtgcacat
    10261 acaccgataa cagctgtagg gacaccgata ttcgctttat gaattgcacc accatcagtt
    10321 ccgccgggtg aaatgtaatg ttgatacata acatcatgac gtaacgcaac atcttgtaaa
    10381 aatgttttaa atgccggttt taacaacatc gttccatctt taatacgtaa taatgctcct
    10441 tctccgagca caccggataa accttgtcga cctttcatgt catttgcagg ggagcagtcc
    10501 acaacgaatg ctacatccgg atccactaaa cgtgctgcca cttctgcacc acggagacca
    10561 acttcttcct gaacattcgc accgacgtac aaatcaaagt ctagtgtcac atcttttaac
    10621 tgttctaaca attctaacgc aatgacgcaa ccataacgat tatcccaagc cttcgcagca
    10681 tagcgatatt cggacaattg caatagttct gtataaggta cgatcgcatc tccaatttga
    10741 atacctctgt tatatacagc gtcagcatca ctttctccga tatccaagag caagtcttca
    10801 atacgtggcg cttgttcctg accacttcta aaatgttttg ggatattcgc aacaacacca
    10861 ataatttctt caccttgttg cgtcataatt ttcaagcgtt gaccttgcca aatatcgttt
    10921 gcaacgcctc caagtgcagt aaacttaata aagccttgtg gtgtcacctc agtaatcata
    10981 aagccgattt cgtccatatg tgccgccacc atgacacgtt ttgcattcgg tttaccactt
    11041 ctttttacac cataaaaacc acccatacga tcatctacaa acgtatctac gtaaggtgcc
    11101 atcatttttt tcatatactc acggacatgc tgttcaaagt taggagcacc atgcatttcc
    11161 gttaatgttt tgattttatc tattgtatga ttcgacatga cacacactcc tctgaatttt
    11221 tattctcttt acttagtata tcatctttat tgtggtaaac tataattaag tcttcaataa
    11281 ggagatgtag aaaatgatat cgaaaaaaaa ctggccttta ttgattccca ttttaatcct
    11341 tagcctttta gcaggaagtt atttttacgc gctgaatatg aacaagcaaa aatacatatc
    11401 agcagataaa gtcatccaat ctgtgaaggg ctatttcaga catgtcacag gctcttatat
    11461 tttgtatgaa ccaacgacat atcgtaaatt cggtattgaa tatgaggttt ataaaggcgg
    11521 catcactgct gagcgacacg gaaaaacatt taactatgaa tttattgcag atgcatataa
    11581 tggccaaatc attgatatta tagaaatcta acgttgctca tctcaaaggt gaaccagcat
    11641 agtcacattt attgtggtat gttggttcac tttcttttta atcaacatgc tcacgtaaaa
    11701 ttgacgcttc gacacttttt aagtctttgc tcaatttcgc cgcaaaatgt tgaacatcat
    11761 gataaaacag aaaccaatat tgatgtgcga catagtaacg tgtgagtcgc tctttttcac
    11821 gaatagattg cataggataa tcatcgtaag cagagaccca taatggattg cgatgtgcag
    11881 tcgtacttaa aatatccgcc atatgcacag ctttttcacc ttcactttct atctcgatga
    11941 cagcatgacc aaaactatga ccaccggtat gtttcatttt aattcccgga taaggctcaa
    12001 tagtatcttc aaataaaatc aaattcgctt cataggttcc tctatttata ggccaatacg
    12061 tcgcttgact tctaatatta ggtgcaataa attcatacca ttcatcttgt tgaacatagt
    12121 gccacgcatt aggaaattgc gcttgaccgt tcgcatctgt taaccctgtc gcatgatcaa
    12181 aatgcatatg cgtcattaac acaatatcga tatcctcaca tgttagtgag aattgtgcga
    12241 gtgatgcatc aatatctgat tcatagcgta caccataatt acgcaactgc ttctcggtta
    12301 attttccttt accaatccca gtatcgatta aaatattttt atcttcagtt cgaatcagta
    12361 tgggggaagt cgttaatggg acttggttct tatcattcac tggatattca cgttcccata
    12421 acggtttagg aacgacacca aaaatcgccc caccgtccat ctgtgtgaat cctccgttta
    12481 gtggatcaat ttgtaacttg cctaattgca tatcgaacac ctcaatttca ttttacgcat
    12541 ttccattatc aacgaaagca tagtccggtt tcaactctca acactcgtga ggttgggaca
    12601 tagaaacgtt tgagtttcaa tctattcata gatttatgat tcattagtaa ttttaaagta
    12661 gatggaaaat gtcaggaaat gagatacaaa aaattgcatc aatagcatca aaatttttat
    12721 gtcccatcca aatcaaaaaa gcaatgcggg cgatttggag tcacacacat tgcttttata
    12781 aattattcgg ttgtctgttt agaatgaaat tttgcttcca ttcgataaat acgtgaacct
    12841 ttttcggcaa atttatgttc atactcagtc ggaatattat ccccttcgtc ttcttgatgg
    12901 aggttcaagt taatttttgt aaaatacatg ccgaattgag acatactctc aagactatat
    12961 gcaaacaatc cgcgattatc tgttttaaaa tgaagctcac catcttcacg aaggatttgt
    13021 tgatagagcg ctaaaaagct acggtaagtt aatcgacgtt tggcgtgccg ttttttcggc
    13081 catggatcag aaaagtttaa ataaattcgg tccacttcgc cttgacgaaa atagtctgtt
    13141 aaaatgaccg catcgttaca taataattta atattcgtta agttatgttc gcgtacttta
    13201 tccaacacac gaatcatcac atttttatct ctttcaatgg caacatagtt aatatgtgga
    13261 ttttgctgag ctaaggtcgt aataaacttg cccatgccag aaccgacttc tatgtgaatc
    13321 ggctgttgtc gttcgaacca ctcactcact tgatgggcat gcacggcttc taaatccaca
    13381 atatcgttat gctcagttaa gtaagactca gcccacggtt tatttcgcat tctcatgatt
    13441 attcatactc cctaaataaa tacattactc ttcatgactt catttaagaa tttgagccaa
    13501 gtattcatat ctttataacg tttatgttct tcgttccact gaatcatacc aatagactga
    13561 atcaccgtat accatttcat acgttttttt aaattcatcg tttctttcac ttcatatgtg
    13621 tcaaaccaac tcgaccattg cgcttcaggc acgtagttgt agagcagcat accgatatca
    13681 atggcagggt cagcaatcat cgcaccctcc caatcgacga gaaagagttc atctttatct
    13741 gataaaagcc agttattatg attgacatcc ccgtgaacta ccgtataaaa acgtggatca
    13801 aactccggca tatggtcttc caaatacgtt aaagcctttc tcacgatatg atgcgttaac
    13861 acatcacgag acaaagaggc gttaatttta tgcaacataa tttcaggtgt gataggcgcc
    13921 atctccatac gcttcaacat cgttaacaat ggttttgact gatgaatttt tttcaacaaa
    13981 tgcgccacac gattttgggc catttcttgc gattctagtt cacgcccatt tttccaatgt
    14041 tgggctgtta ccacttcgcc tgtttcgata cgttttgtcc aaaccaattt aggcacgatg
    14101 ccttctgctg ataatgcagc aataaatgga ttggaattac gtttcagaaa caacttttga
    14161 ccatcttgtt cagccatata agcttcacca gacgcaccac cagccgagtc aagcgtccat
    14221 cctaactgat aaaactgctc cacaactcgt tcacctcact ttcaaataga aaaggctcaa
    14281 gaaatttttt caagagccat atttaaatca ttttttcaat gattttaaat tcacgttcat
    14341 gttttgcact catttaagat tttataatta ttgagccttt ttttcaacca aaaatgaaac
    14401 acaaaatgtg actttttacc tttatccgtt ttgaaagttt cacaaactct tcataatact
    14461 gtcaaatcag cctacttagt gtgaatgtga atgaatatat ctttcaaaac cttcttgtag
    14521 acgtcttgta atcggaccca cttcaccgtc attaaccact tcaccatcga ttttaacgac
    14581 aggcatcact tcggcagacg tacttgaaat gattacttca tcagcgtctt tcaaaaatgc
    14641 taatgagaat gcttcatctt taaaggtaat ttgctcatca tcacaaatcc atttaatcac
    14701 ctgacgtgta atccctttta aaattaaatt gttcgccgga tgtgtgtata caacgccatc
    14761 tttaatcgca taaacattac ttgaagcacc ctctgtcact gtaccatcac gatgttgaat
    14821 cgcttcagtc gcattgtatt ttgtcgcata ttctttcgcc aatacgttac ctaataagtt
    14881 taaactttta atatcgcaac gtaaccagcg aatatcatcc gtagtaacga ctgagacacc
    14941 ctcttcaagc gctttaaacg gacgatcgta tgattttacg aaagctgtta atacaggttc
    15001 tactgatggc gttggaaaag catggtcacg tggtgcagca ccacgtgtca cttgcatata
    15061 gaccccacca tttgtcacat tattcacttg tgcgagttca cgaacaagtt cagtcaatga
    15121 ttccactgta taatttaatt ctaaaccgat ttcactcgca ctgcgtaata aacgttcgaa
    15181 atgttcttta gcagtaaata atttgttgtc ataaatgcga acgtattcgt aaataccgtc
    15241 tccaaaattg tatccacggt cattaaaagc gactttagcc tcgctttctt ctacaaaact
    15301 ttcattaatc aatacttttg tcatagatta tccctccaca caaaccgcat aaatcgcttc
    15361 taaatagatg ctcattgcgt taaatagttg ttttttcgtg atgtattcat ttttttgatg
    15421 cattaaatct tctgagtcct caaacatcgc accgaacgcg acacctttat ctaaattacg
    15481 ggcatacgtc cctccgccaa tcgtaaatga tgggcgcatg tctcctgttt ggttgcgata
    15541 agctgtgagt aatttttgca caaatggatc ttcagggttc acaaaatgag gtgtttgtac
    15601 tttaagacct tcaatgtcaa agcctaatgc ttgaatctcg gcagtaaagt cgctgatggc
    15661 acggtcaaaa tcaaaacctt ctggataacg taaattaatg ccgaacgaac ctccttcatc
    15721 taagtcatag cgaataacac cgatatttgt tgttaaatca cccatcgaat ctgaatggaa
    15781 cttcataccc attttttcac caaagtgaga atcaaataag tatttttctc caaaagctgt
    15841 ccatgattgc gcagattgat ttaaattcaa cgtgtttaag aaatgaatta aatataaacc
    15901 agcattcaca ccaatagatg gatccatgcc atgtacagct ttaccaaaaa cagttaattt
    15961 caaaatgcca ctatcaattt cgtggtggcc ttctaattga tgttctgata aaaatgcttc
    16021 aaaacgttga atcgtatccg tcatattttc ttttactaaa atatctgcat tggcaacgtc
    16081 tggtaccatg ttgaaacgtt caccggaagc gaactgcttc aattcgattt caggttcatc
    16141 gtcatctaac gttaaggttt tctgtttaat cgtaaatgtc gtaatccctt tttcaccgtg
    16201 aatgagtggg aattctgcat caggtgcaat accaatcgtc ggcatttctt cagttttgaa
    16261 ataacgttct gtacatttcc attcagactc ttcgtctgtt ccgataataa tatgtattct
    16321 ctttttccaa tcgacattca tatcattaag aatttttact gcataataag ccgcaatagt
    16381 aggccctttg tcatcaagtg ttccacgcgc aataatacgg tcgtccgtct caacagggtc
    16441 aaatggatct gaatcccaac cgtcaccggc tggcacaaca tcaacatgac ctaaaatacc
    16501 aaaaagttct tcacctttac cgatttcgat acggccagct aaatgatcgg tatcaaatgt
    16561 attaaatcca tcgcgctcag ctaactgata catatattcc agtgctgcct taggacctgg
    16621 acccactggc gcgtcttccg tagcttctgt atcattacgg actgatttaa tagctaaaag
    16681 tccttttaag tcttcgatca tttgcgtttc atattcttgt actttttctc tccacatgct
    16741 gatcaacttc ctttttttca tgattgtatt tcttatttta catgaattat tcattaaacg
    16801 acagtaatat ttctgcacac ttttttaatt tttctgataa aacattgtcc ttcattttaa
    16861 aatggcgatg cactcgcgga aatactgaaa atattatcat gaaaaaacat cttacataga
    16921 actcaagtca tcataggcac catgagttct atagcaattc ataacaatgc tacaaatgtc
    16981 ctcaaaactg tgacagtaaa attaaaaaac agacgctaag ggcatcgaca tgacacctta
    17041 acgtctggtt ttaaaaatgt tacttgttcg gttcgttatc acgcaccaca tgtaaattgt
    17101 gtgaagaatc tccgccacct tcatcatcaa acaaagcttc tctgtcatct aagttatcct
    17161 gttgttcgct attcaataac tgttcttttt tctcattaat aaatgatttc ggatcttgtt
    17221 ttgcttcgtt aatataagct tttggatcct ctttcacttt attaaattct tgcgttgcag
    17281 cttcactcac ttgtgctgct ttttcttgtg cgcgcttttt gtagtcttcc ggattttctt
    17341 tatatttttg atattcttgc ttcaagtttt cgcggttttg tttatttgaa agtacaactg
    17401 ctgccactgc acctccaata ccaagaatcg ctttaaacag ttttcctgat tttgccatct
    17461 ttaatcacct caaatacttt taatgtaagg ttacccgaca gatatgcaag ttaaacctct
    17521 ttcaattaaa tatttgaccg attaacgata attcagtaat ttcagctcat cctctgttaa
    17581 agatcgataa gcacctggtg acagtgatga atctaacgtg aggtcgccaa tagacactct
    17641 ttttagcccg acaacctcat tatcaatcgc atgaaacatt cgcttcactt gatggtactt
    17701 cccttcttga atcgtaacga atgccgtcat tgaatcatcc aaaatttcaa gatgtgcagg
    17761 ttgtagcctt ccctctttta atgtgatacc ttcttcaaaa cgttttggat catttgtttt
    17821 caatgcatac ttcgctttaa cccaatacgt tttcgataca tgcttatttg gattcatcaa
    17881 cgcatggtta aattgaccat cattcgtaat taacaaaagc ccttctgtat ctttatcaag
    17941 ccgacctact ggaaataagt ctaaatgtcg gtagccttca attatgtcaa tcactgtttg
    18001 atgttgatca tctaccgttg cagaaatgac gttttgaggt ttattcatca tcaaatacac
    18061 aaacggttcg taagcaatca cacgcccctt cacttcgacc acatcatgct ctggatcaat
    18121 ttgtgtttta gaggacttga ttttcgcgcc attatgcaat acatgccctt ttttcaacaa
    18181 tgctttaact tctgtacgtg taccgacacc catttgcgct aaaaatttat caatacgcat
    18241 tataaaaagc tcactttacg tctaattttg tttggaatct cacctaaaaa cttatctgcc
    18301 aagcgtgttt tcatcgttaa tactgcataa ataataacac cgacgatagc acaaatgact
    18361 gtaataataa atgcgccgac atgacttgct ggtgaaatca cgaattgaaa gccaaaataa
    18421 atgatttcaa caataatcat catcataaag ctatataata aaattttaca tacatcgata
    18481 atcgtctcgt taaatttgaa acgcgcatat tttttaagaa tgaaaaagtt acatacaatc
    18541 gcaaaagtta atgcaatcgc tgtacttaaa atcgcaccag ctgtttcaaa cataataatt
    18601 aaaggcatgt ttaaaatgaa tttcaacacg actgaaccaa caatgacgaa caccgttaat
    18661 ttttgcttat caatcccttg tagcatcgat gccgtcacac tcaatagtga aatcaaaatc
    18721 gcgacaggtg catagtagaa caatagacga ctgccatcca tactgtattc ataaaacacc
    18781 gtataaagtg gcacagctaa ggccataatc cctaaacttg ccggcacggt aatgtacatc
    18841 aaaacaccta atgacgtacg aatttgacga tgcatttcaa cataatcgcc tttttcatat
    18901 gttttagtaa taaatggaat taaactaatc gcaaatccag cagctaaaga cgttggaatc
    18961 ataacaattt tattcgttgt catattgagc atcgtaaaaa atgtaccttg taaactcgtt
    19021 tccacgcctg caatggataa tgcattattg tgcgtcaatt ggtccacaat cataaacaat
    19081 gggaagttaa gacttacaat gacgaatgga atactgtatg agagaatttc tttgtacatt
    19141 tttgaatatg acacatcaat ccccgtcata tccgaagcca ccatttcatg tataccgcga
    19201 cgccgcttaa tccaatacca ccaaagtgtt aaaatacctg caatcgcacc aatcgcagca
    19261 ccgaacgtcg cgataccatt tgctaataat acagagccat caaagacatt taatacgaga
    19321 tagctaccga ctaaaataaa aatgatacgt gcaatttgtt ctgtaacttc ggataatgct
    19381 gtcggtccca tcgatttgta accttggaag acccctcgcc aagtggctaa cactggaata
    19441 aaaataacga caaagctaat cgtacgaata atagcagtaa tttgatcgac tgtccaaccc
    19501 gcatttttat ccatattatg cgcaatcgtg acagacgcaa tcattggaga caagaggtat
    19561 aaaatgacaa agcctaatat acctgtaata ctcatcacga taaagctgga tttgtacagt
    19621 ttttgactga cacgatatgc acctaatgta ttgtatttcg caacgtattt cgacgccgca
    19681 agaggtacac ctgcagtggc aacagctatc gcaacattgt aaggtccata agcatagtta
    19741 aaaggtgcaa gattatctgc accgcctatg atttggtaaa acgggataac gtaaataatg
    19801 cctaaaactt ttgtaattaa aatacttaaa gttagtaaaa atgttcccct tactaattcc
    19861 ttgttttcac tcatagataa cctacctact ctacattttt tcaagattta attataacac
    19921 aatacggata ttatacactg attgagaata tgttaaaatc aaaatatcaa ttttaagggg
    19981 tttttataaa atgtatcaaa caattgtgat cggtggcggg ccgagcggat taatggctgc
    20041 catttcatca agtcaaaacg ggcaacccgt actcctgtta gaaaaaaaga aaggtttagg
    20101 acgaaaatta aaaatatccg gcgggggtcg ttgcaatgtg acgaacaact tgccctatgc
    20161 tgaaattatt caacacattc ctggaaatgg aaaattctta tacagtcctt tttcaatttt
    20221 cgataaccaa tctattatcg aattttttga atcgcgtggt gttgcattaa aagaggaaga
    20281 ccatggtcgt atgttccctg tatcaaatca gtcacaagat gtactcgatg cattgattcg
    20341 tgaattgaaa caaaataagg ttacagtcaa agaagaacaa actgtagtgg acgtgaaaaa
    20401 agtggattca gaccatttcc aagtccaact tcaagatggt gatacgtata aagcaaaaac
    20461 agtcattatt gcgactggtg gcacaagtgt accccaaact gggtcaacag gcgatggcta
    20521 tcgctttgca caatcactag gtcatcacat tacagaactt ttccctacag aagttccgat
    20581 taaatcaaac gcaccattta ttaaaaacca atcacttaaa gggttgagtc taaaaaacgt
    20641 cggtctatct gtcttaaaga aaaatggcaa aaaacgcatt actcatcaaa tggacatgct
    20701 ctttacacat ttcggtatta gtggccctgc cgcactgaga tgtagtcagt ttatttatca
    20761 cgagcaaaaa agtcagaagc aacaaaacat tcaaatgcaa attgatgcct ttcctgaaat
    20821 caatgaagaa gcacttaaac aaaaaatcac gaagcagctc aaatcacaac ccgataagca
    20881 tattaaaaat gcactcaaag ggttgattga agaacgctac ttaacactga tcattgatag
    20941 cgccggtatt ccgtttgaaa cgacatacca tcatatcagc gcgcaacaac ttagcacact
    21001 cgcacatcaa ttcaaagcat ttactttcga agtctacggc acattaccgt tagaaaaagc
    21061 tttcgtaacc ggcggcggcg tttccatcaa agaaatcgta cccacgacta tggaatctaa
    21121 aatcacacct ggcctatatt tatgcggtga agtattggat attcatggat atacgggcgg
    21181 ttacaacatt acgagcgccc ttgttacggg ttacgtcgca ggttacttcg ctggctttgt
    21241 agaataaaaa ttaaccctgc cacacaacat tcccccatct caaattgata acgagctggg
    21301 gggttttgat tgctgtatcc attcaaatgt taacatcatt aatctccgca tttggccgtc
    21361 tcaacgcgta caaagagcta tgttaaggtg agtggtggct tttgatagtt tgtgttgttg
    21421 tttgtccccc ccacccccct acatattgca agaccgtgca agactcctga gaggaaagtt
    21481 gaaagcaaaa tcaaatcatt gaattatgag agtggctact ttttaacgca gtagctatct
    21541 gacttctcaa tgcttttgcc ggtgagaagt cgagtcagcc ttgcgggggc agtacgacga
    21601 aatctttgtt gtacatgaga tttctgtact gctcccaaaa tccaattcgg cctccatcaa
    21661 gtgtatgctt taatccagcc gaatttagtt gaaggatcag cccctaggaa agggaaggca
    21721 agtgctgcaa tcaagaaata ttaaactaaa cttttcgaaa tgttcaacaa cctacaaaca
    21781 cactcaaatg taatcgaaat gttcaccaaa caacaacaca aaaacactgc tattatcgca
    21841 tggtctccca cacaacaata acagtgcatc atcatattct aaatacgctt aaactctaat
    21901 ccttcttcac cccaagcacg cataccacct tcaacattca ccgcatcaat cccgtgatca
    21961 ttcaaaaacg caaccacttt cgcacttctc acaccgccag cacaaacaat gtagtacgtc
    22021 gtatcctttt tgaaatcatc cacatgatcc ggaatgtcat tcatcggaat atgttcagca
    22081 ttaggaatca ttcccattgc cacttctcca tcttcgcgta catcgacaat atttactggt
    22141 tctgaactta aaacaatctc ttttaattca tctgtagtaa tttctttcat tatcctctac
    22201 gctccctcat tcttctttat ttcgcgacaa tattcaccaa tttttgtgga actgcaataa
    22261 ctttcttaac atctttgccc tcaactgcag ctttaatgtt gtcattggct aacgctgtcg
    22321 cttccatatc tgctttactc atatctttag gaatttcgat tttagcacga actttaccat
    22381 tcacttgaac gacaatttca accacatctt cttctaatag cgatggatcg aaacttggcc
    22441 atggttggta agtaatcgtt gtatcatgtc ctaaaataga ccataattcc tcaccgacat
    22501 gcggtgcaat aggggctagc attttcacaa aaccttctgc ataagcttta gaaatgttgt
    22561 cagccttata acattcatta ataaagacca tcaattgact aattgccgta ttaaaactta
    22621 atgattcgaa gtcttcagtg acctttttaa ctgtttgatg gtaaaccgtt tgtaatgctg
    22681 gtgtgtcacc ttcaatcact ttatccgtga gttgactgtc ttcagtgaca aataagcgcc
    22741 atacacgatc taagaagcga cgtgaaccat ctaaaccatt ttcactccac gcaattgaag
    22801 cttctaatgg ccccataaac atttcatata aacgtaaagt gtctgcacca tgtgaacgaa
    22861 cgatatcgtc tggattcacc acattacctt ttgatttgct cattttttcg ttaccttcac
    22921 ctaaaatcat accttggttg aataattttt ggaaaggctc agacgtagga acaatgccaa
    22981 gatcataaag cactttatgc caaaagcgtg catataataa gtgtaataca gcatgttcaa
    23041 cgccaccgat ataaaggtca acaggcaacc aatgtttaag cttttcaggg tctgctaaca
    23101 tttgatcatt tttaggatcg atatagcgta agtaatacca acaactaccc gcccattgtg
    23161 gcattgtgtt tgtttcacga cgccctttca tacctgtttc aggatcaacg acattcacaa
    23221 aatcatcaat attcgcaagt ggtgattccc ctgtacctga aggcttgatt tcatccgttt
    23281 taggtagtaa taatggtaat tcgttttccg gtactgttgt cattgagcca tcttcccaat
    23341 gaataattgg aattggttca ccccagtaac gttgacgact aaataaccag tcacggagtt
    23401 tataattcac tttcttttct ccaaggcctt ttgcttctaa tagttcaatc gcttttgcaa
    23461 tcgccgcctc attgttcaga ccgtctaatt caccagactg aacatgtgca ccgtcaccag
    23521 tgtaataagg tgtctctgca tcgttttcaa taactgtcac aactggtaaa tcaaatgttg
    23581 tcgcaaattc gtagtctctt tcatcatgtg ctggaacagc catcacagcc cctgtcccat
    23641 atgaggctaa cacataatca gcaatccaaa taggcacttg ctttcctgta aacggatgaa
    23701 tcgcataagc ccctgtgaag acacctgttt tttcttttgc aagatctgta cgttctaagt
    23761 cagatttttt cgccgcttca tcttgataat gtttcacttt ttcatattgt tgtggtgtcg
    23821 taatacgatt cactaaagta tgttcaggac ttaacactaa aaatgttgca ccgtaaatcg
    23881 tatctggacg tgttgtaaat acttcaatcg gtgtgttgat attttcgact ttaaagttca
    23941 ctttcgcccc ttcagaacga ccaatccagt tacgttgcat atctttaatc gattcaggcc
    24001 aatcaagtgt atctaagtct tcaagtaaac gatccgcata ttctgtgatt ttcaataccc
    24061 attgtttcat cgggcgtcgc accactgggt agcccccacg ttctgataca ccatcgacca
    24121 cttcttcatt agatagtact gtgcctaacg cttcacacca gtttaccgga atttcatcaa
    24181 tatacgctaa tcccttttta taaagttgaa taaaaatcca ttgtgtccat ttataatatt
    24241 cagggtctgt cgtactgact tcacgatccc agtcataact aaaaccaagc tcttgaattt
    24301 gacgcttaaa tgtttgaatg ttacgttttg taaattcggc tgggtcgttt ccagtatcaa
    24361 gtgcatactg ttcagcaggt aaaccaaacg cgtcccaccc cattggatgt aatacattgt
    24421 aaccttgcat acgcttataa cgtgacaata tgtcagttgc tgtatagcct tctggatgcc
    24481 ccacatgtag ccctgcacct gatggataag ggaacatatc taatgcataa aatttcttct
    24541 gcccgatatt atcttctgtt ttaaacgttt tgttctctag ccaatacgtt tgccactttt
    24601 tttcgacttc ttgatgattg taactcacaa ttaaatcctc ctcattcata aaaagacacc
    24661 tcaaactatt catatatgct aagggacgac ttttgccgcg gtaccaccct cattcactcc
    24721 tagaagtgca cttcatttta aatagtaaga gatgtcattt atttttcatt atttattggc
    24781 aagttcactt aaagtttttc gttagttcgc accaccacta actctctgtg gaaacccttt
    24841 taagttacta ctccagtcca gtacgaccac atgcttaatt cgtaatcatc tactatatta
    24901 tgcaatttgg tacgaagatg caagtgtcat ttactgtgat taacgatata acgttttcgg
    24961 atcaactttt ctatcataaa tcgtaaggaa tgccatagcg atgacgagta aacctatcat
    25021 tgataaaaac atgatttgca tattgaacac atcgacgagt atcccgccaa ctaatggacc
    25081 gaaagctttc cccactgttg aagcagaatt cacaatgcct tgatagaccc cttctctacc
    25141 tttaggcgct aaattattag caatcgttgg tacagcaggc caaacgaaca tttctgcaaa
    25201 tgtcataatg accatcccta caacaaaaat tgaaaatgat gtcgcaaaac ttgtcacgaa
    25261 aaacgacaat ataaatacga ctaatccaaa gtaaagttgc tttttcagct gccctttaat
    25321 gaggtgaata atcggtaata ttaaaggttg tcctactaaa atgagcaccc cgttcactgt
    25381 ccataacaaa ctatattgac tcatagaaat accaatactt tgtgtaaatg acgcaatagt
    25441 tgtttgccat tgaacgtatg caatccaaca tagcgcaaac atcacacata ataaaatgag
    25501 tgctgtgaaa tgtttcttgt tttgaatgtg cgccacattt tccaacgttt cttgatgttt
    25561 aaccgtcgct tgatagtcca tattaaattg aaataatgcg ataaagaaga aaatgacata
    25621 catcgccaaa ttcgccataa aaatataatt aaagcttagt tcagcaacaa aaccacctag
    25681 cgctgcacct aatgccacac cgatattttg cgctaagtaa atcgcattaa acgtttgtct
    25741 tcccccttga ggccacactg ctccagccat cgcataaata gcagggataa tcatcccacc
    25801 gccaaaaccg agcataatga gccaaatcgc ataccaaggc caaccgtgga agaaatttaa
    25861 taaaatggta gcgcacaaac tcacaatcgt gcctaacata attgtccgat atcctccaag
    25921 tttatcgaac aatgtcccac caagtaaatt tcctacaatc attccaaatg aattgaccat
    25981 cagtacgagc ccagcagtac ttaatgattt gtcgagttcc tcattcatat agatcgtatt
    26041 caacggccat aaaaaactcg cacctgtgat attaatcgcc atcccaatga cgagccacca
    26101 tatttcttta ggcatattca ctgatgtttc actccttttt gtctctagca cacactataa
    26161 cacgttataa tgaaaatatg ttaaaatctt caaatactgt ttaagaaaaa tggcgaatac
    26221 gatatgataa aaacagttta aacatagaaa gttgaaagga agattgtgat gggcacttat
    26281 ttcccatatg cttttgagaa gaaacgatat catactttaa attaccatct aaaaaataaa
    26341 tttggacaaa aaatatttaa agttgcttta gatggtggtt ttgattgccc taatagagac
    26401 ggtacagttg cgcacggcgg ttgtactttt tgttcagcag cagggagtgg tgactttgcg
    26461 ggtaaccgtg ctgatgctat cgaagtacaa tttaaagaga ttaaaaataa aatgcacgag
    26521 aaatggcacg aaggtcaata cattgcatat ttccaagcct ttaccaatac acatgcgccc
    26581 gttgctgtat tgcgagaaaa atttgaagct gcattaaaag aaccgggtgt tgtcggatta
    26641 tctatcggga cacgtccaga ttgtttacca gatgacgtcg tggactacct cgccgaatta
    26701 aatgaacgta catatttatg ggtagagtta ggtttacaga ccattcatca agaaacatcg
    26761 gacttaatca accgtgcaca tgatatggat tgttattacg aaggcgtcgc aaaattacgc
    26821 cgtcacaaca ttaaagtatg ttcacacatt attaatggct tgcctggtga agattatgac
    26881 atgatgatag agactgcaaa agcggttgct caaatggatg tccaaggaat taaaattcat
    26941 ttgttacatc tattaaaagg tacacctatg atgaaacaat atgataaagg tttacttgaa
    27001 tttatgacga aagaacagta cattcaactc gtctgtgatc aactcgaaca attgccacca
    27061 gaaatgatcg tccaccgtat tacaggtgat ggtcctattg atttaatggt cggtcccatg
    27121 tggagtgtca ataaatggga agtattaaac gagattgacg cagaacttga acgtcgtgga
    27181 actgttcaag gcgcatctta tagttctcag gtgcacatat gatagtcgaa cgtattttac
    27241 cttttgccaa atcattaatt cgaagccata ctacatcaga aagtgtcgtc attgatgcaa
    27301 catgtggtaa cggtcatgat acaaaatttt tagcagacct cgtccctcat ggtcatgttt
    27361 atggctgtga catccaacaa gaagccattg aaaatacaaa acaacgtgtt cacgattaca
    27421 acaatgtttc tctttttcat acagggcacg aatggattac acaatatatt agagacgaac
    27481 atctcactca agtacatgct gccattttta atttaggtta tttaccgaaa ggcgacaaat
    27541 ctatcgtcac acaatcaacg actacacttg ctgctgttca gacgattttt gatatattac
    27601 aaccagaagg catcatcgtt ttagtcgttt atcctggtca tgaagaaggc aaggaagaaa
    27661 gcatgacttt gatgaagcat ttggcagcgt ttgatcaaca acgtgctcat gttttgaagt
    27721 atgagtttat taatcaacaa aatcgaccac catatgtgat tgcgattgaa aaaagagcgt
    27781 agtgtcaaat gaggttaaag cgttgtaaaa gatgtgtaga tttttaagtt tgtttcagtt
    27841 ttgtagattt taaattggaa aacgataccc caatcctttt gatttagcac tcaatattta
    27901 gctatctggt catgcgtttc aaaaggtggg cgtatcgttt tcattcttat atcctacttc
    27961 aagtaaattt aaaaattcat tgctatatta cttctttcaa aatactaaga gagatgtgaa
    28021 tgcggtgaat taaagctttt gtattgattt caaatttacg ttcatcgctc actacgagaa
    28081 aaaccaacga caatcctcat tagggaagcg ttggttttat aataggtagt atgaataatt
    28141 tattttcatt tgcactctct ttttaattca atgtcgtctt tggtgatgcc aagaattgcg
    28201 ggcttttgta gctcttcaat tctttttagc tttttcagaa tgggtggatt aaatcttgat
    28261 atcaaatgag agtcgcattg gtctttaaat atcacagccg ttgacaatgt catttaataa
    28321 tgttctcaaa tgtgcatctc ttttttcgat ttccatacat gtaaaattaa ttaagtcttg
    28381 cttgtccgct tctttatcct cattaaaatg aataataacg gttctttcat cgtttgtcgg
    28441 acgctcttta acaatccatt tcatttctac caaattgttg tacgttcttg tacgcttata
    28501 agtcttaact ttcacgtagt catccatttc ttttaacgtc atagaacctt gatcccaaag
    28561 tgtcagtaaa atcaaaaact cttctttcga taaacgatat tttccctcaa tttcttcaaa
    28621 aatggcttca acttcttttt gcagttggtc caggcgcatg atatcgctca ctttataatt
    28681 atttttttca gtcataataa a
//
LOCUS       DANHOL010000012        28468 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.012, whole genome shotgun sequence.
ACCESSION   DANHOL010000012 DANHOL010000000
VERSION     DANHOL010000012.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 28468)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28468)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28468
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.012"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            92..1432
                     /locus_tag="PTC08_000355"
     CDS             92..1432
                     /locus_tag="PTC08_000355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002494266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine decarboxylase"
                     /protein_id="HDK5681889.1"
                     /translation="MQQPLRAKMLEWRKSQPISMHVPGHKNGTIGDLSMTQVPYDMTE
                     ITGFDNLHHAEEILYESMMQFNKYPGYRGYFLVNGTTSGILAVIHALASIPGYVAIAR
                     NVHKSVFHALELGQQSAQILATSVSEKTGQYCQPDVGRTDLERTKLGVVTYPNYYGET
                     FDVAHVVEQFHQFNIPVLVDEAHGAHFDLPGFPESSMRAGADYVVQSYHKTLPSLTMS
                     SVLWIHQDAPYREWIEYGLQVFQSSSPSYLLMESLEAAQAFYASYDSTLFFEKRKQLI
                     ATLENKGLTVITPQDPLKLLIRYKGMTGSSLQAQMEAQAIDVELSDENAVLWVLPLWH
                     HQDRFPFEELLERIDRMTLRPEAQSVHDKPPHLFTQPSTYRAIGMHPSRSIPYQKAEG
                     RILSRHLTPYPPGIPSLLKGEIVTTDMIKLIEYWQSRGFCVEGLMDDKITVKDE"
     gene            1435..2052
                     /locus_tag="PTC08_000356"
     CDS             1435..2052
                     /locus_tag="PTC08_000356"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HDK5681890.1"
                     /translation="MSLFITIEGPEGSGKTTVVQAVSEQLAQHYDVMTTREPGGVQTA
                     EAIRQILLDGETMDARTEALLFAASRREHLVAKVLPALSQGRLVICDRFIDSSLAYQG
                     YARKIGVKEVQAINDFAIEGRYPDLTIYLDIPAEVGRTRIESNRRAQNRLDKESVAFH
                     ERVVEGYQQLIAQDPKRFAVINANQSIEQVVTAALQVILQKIDAQ"
     gene            2122..2451
                     /locus_tag="PTC08_000357"
     CDS             2122..2451
                     /locus_tag="PTC08_000357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019467733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic-di-AMP receptor"
                     /protein_id="HDK5681891.1"
                     /translation="MKMIIAIVQDQDSQELADKLVENNFRATKLATTGGFLRAGNTTF
                     LSGVEDERVEEILELIGGSCGNREQLVSPITPMGGSADSYIPYPVEVEVGGATVFVMP
                     VESFHQF"
     gene            2697..3629
                     /locus_tag="PTC08_000358"
     CDS             2697..3629
                     /locus_tag="PTC08_000358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta'"
                     /protein_id="HDK5681892.1"
                     /translation="MEVIEQLTKAYHNQKLSHAYLFEGDDAEAMKTTAIAFAQLILCQ
                     DEERCRLKVEGQNHPDFQYVMTDETTLKKEQVENLVHHMNQLPIEGDYKVYIIQDFEK
                     LTVQGENSILKFLEEPPKNTIAMIMTTKPEQILDTIHSRCQHVYFKPMSRATFVSRLT
                     EQDNTLTVPIAELLSTYTTQLEVALQLHESVELAPMRKMLLQWCDKLLNQREMALIGV
                     VELMKYAKTRQLQLLALSGMNAFFQDLMYVKVGMVERITFSELQSEYETLVTRLSYHH
                     LTYIIEQITEAHKKLNQNVNATLVFEQIAIKVKG"
     gene            3635..4438
                     /locus_tag="PTC08_000359"
     CDS             3635..4438
                     /locus_tag="PTC08_000359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stage 0 sporulation family protein"
                     /protein_id="HDK5681893.1"
                     /translation="MYAVVGIYFEKANTLEYYAPNTTSLTIGQYVVVESKRGHELGVV
                     RHAPREVSEQDVTLPLKPVLRIATEADLIQYEKNEVDAARAADMCKGFVEQLGLEMCV
                     VNCEYILDRSKIIFNFTADERIDFRKLVRMLAQRLKTRIELRQIGVRDEAKLLGGIGP
                     CGRSLCCATFLGDFEPVSIKMAKDQNLSLNPTKISGACGRLMCCLKFENDFYESAREQ
                     LPDIGTRIQTPEGHGEVVSLNIIDVSMQVRLDGMEQLMEYHIEELETLK"
     gene            4451..4816
                     /gene="yabA"
                     /locus_tag="PTC08_000360"
     CDS             4451..4816
                     /gene="yabA"
                     /locus_tag="PTC08_000360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA replication initiation control protein YabA"
                     /protein_id="HDK5681894.1"
                     /translation="MDRNELFARLMQLEQHVARLNESMQELKALTVELVEENVALQLE
                     NDNFKTLMQQERDNVEATQVQEAEVAPQKPVKKQRQSREYFAKLYHEGFHICHDVFGK
                     HRHGEDCMFCLNVLNEKQE"
     gene            4827..5552
                     /locus_tag="PTC08_000361"
     CDS             4827..5552
                     /locus_tag="PTC08_000361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA1(Val) (adenine(37)-N6)-methyltransferase"
                     /protein_id="HDK5681895.1"
                     /translation="MLQPGERLDYLIREDLRIIQNDAVFSFSTDALLLGHFTEVRKRD
                     RILDMCAGNGVIPLLLSDKGNNVITGVEIQPQLVNMAVRSVQYNHLEDRITMVEMDIN
                     ALIQAYSPAQFDLITCNPPYFKANQTNQHQLEAHKIARHEIYCTLDDCLRVSNHLLKE
                     GGRVVMVHRAERMLDLFESMRHYRIEPKRLHMIFSKPGKAAQTIVVEGRKGGRQGLDI
                     APPFYIYDEQGDYTPEMKEIYYG"
     gene            5545..5793
                     /locus_tag="PTC08_000362"
     CDS             5545..5793
                     /locus_tag="PTC08_000362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011276773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GIY-YIG nuclease family protein"
                     /protein_id="HDK5681896.1"
                     /translation="MAKHYTYIVQCNDATFYTGYTNDLEARIVKHNEGKGAKYTKTRR
                     PVTLCYHEIFETKSEALKREHAIKQLTRQQKIQLIEER"
     gene            5795..6628
                     /gene="rsmI"
                     /locus_tag="PTC08_000363"
     CDS             5795..6628
                     /gene="rsmI"
                     /locus_tag="PTC08_000363"
                     /EC_number="2.1.1.198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (cytidine(1402)-2'-O)-methyltransferase"
                     /protein_id="HDK5681897.1"
                     /translation="MGELYLVGTPIGNLEDMTFRAIYTLQHVDLIACEDTRVTKKLCH
                     HFEITTPLKSYHDHNKEQETETLIDMLVAGKTIALVSDAGLPLISDPGYELVVRAREQ
                     GVTVVPIPGPNAGLTALMASGLPSFTYTFLGFLPRKSRDKTALLETRMYQDSTLLLYE
                     SPHRVKDTLEVIAQIDAERTVTLGRELTKKFEQITTAPVTSLLEQLETDIPLRGEFVV
                     IIEGATPIEGTAWFETLSVEDHVTHYIDEGMKPKAAIKKVAQEREMSSKTVYNIFHDI
                     H"
     gene            6719..8692
                     /gene="metG"
                     /locus_tag="PTC08_000364"
     CDS             6719..8692
                     /gene="metG"
                     /locus_tag="PTC08_000364"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HDK5681898.1"
                     /translation="MVKDTFYITTPIYYPSGNLHIGHAYSTVAGDVIARYKRLQGFDV
                     RYLTGTDEHGQKIQEKAQNAGMSELDYLDGMIKDIKALWEKLDISNDDFIRTTERRHT
                     EVVEKIFEKLLSKGDIYLGEYEGWYSVPDETFYTETQLVDPVYEDGKIVGGKSPDSGH
                     EVELVKEESYFFKLSNYTDRLLAFYDAHPEFIQPPSRKNEMINNFIKPGLEDLAVSRT
                     SFNWGVKVPSNPKHVVYVWLDALVNYVSALGYLTDDDHLFRQYWPADIHLMAKEIVRF
                     HSIIWPIILMALDLPLPKKVFAHGWVLMKDGKMSKSKGNVMDPNVLIDRYGLDATRYY
                     LMRELPFGSDGVFTPEAFVDRTNFDLANDLGNLVNRTISMINKYFDGELPAYQGPTHE
                     LDEEMEQMALDTVRAYHESMDKLQFSVALSTVWKLISRTNKYIDETTPWILAKDESQK
                     AALGNVMAHLVENIRFAAVLLRPFLTHAPYQIFEQLHIHNEALHGFEGLATYGQLTEP
                     IMVTEKPQPIFPRLDVEAEVSYIKASMQPPKEESVEEEVPDKAQIDIKDFDKVEIKAA
                     TIIDAEKVKKSNKLLKIQVDLGYEKRQIISGIAQFYAPEDIIGKKVAVVTNLKPAKLM
                     GQKSEGMILSAEKDDVLTLISLPNAVQNGAVIK"
     gene            9136..9903
                     /locus_tag="PTC08_000365"
     CDS             9136..9903
                     /locus_tag="PTC08_000365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HDK5681899.1"
                     /translation="MLIDTHVHLNADQYDKDLEDVIQRALDAGVDRMFVVGFDTKTIE
                     RAMQLIEDYDFIYAIIGWHPVDAIDFTDERLAWIEKLAEHPKVIGIGEMGLDYHWDKS
                     PKDIQKEVFRKQIALAKRVKLPIVIHNREATQDCIDILMEEHAEEVGGIMHSFSGSPE
                     IADVVINKLNFHISLGGPVTFKNAKQPKEVAKHVPLERLLVETDAPYLTPHPYRGKRN
                     EPARVTLVAEEIAQLRGISYEEVARQTTENAKKLFGL"
     gene            9943..10482
                     /gene="rnmV"
                     /locus_tag="PTC08_000366"
     CDS             9943..10482
                     /gene="rnmV"
                     /locus_tag="PTC08_000366"
                     /EC_number="3.1.26.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001832196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease M5"
                     /protein_id="HDK5681900.1"
                     /translation="MKVNEFIVVEGRDDTERVQRAVTCDTIETNGSAIDQDILDVIRQ
                     AQETRGVIVLTDPDFPGDKIRTTIREAVPGVKHAFIDRERAKNKRGKIGVEHASLEDI
                     REALMHVSTPLSEAHETISKDVLIDLGLIIGPAARHRRNLLGKRLHIGHSNGKQLLKK
                     LNAFGYTEADVRRALEEEE"
     gene            10487..11377
                     /gene="rsmA"
                     /locus_tag="PTC08_000367"
     CDS             10487..11377
                     /gene="rsmA"
                     /locus_tag="PTC08_000367"
                     /EC_number="2.1.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase RsmA"
                     /protein_id="HDK5681901.1"
                     /translation="MHDKDIATPSRTRALLNQYGFNFKKSLGQNFLIDVNIINRIIDA
                     SGIDHMTGVIEIGPGMGSLTEQLAKNAQHVLAFEIDQRLIPVLDDTLSPYNNVTVINE
                     DILKANVAEAIQQHLSHCEKIMVVANLPYYITTPILLTLLEQDLNIDGYVVMMQKEVG
                     ERLNAQVGTKAYGSLSIVAQYYTETSRVLTVPKTVFMPPPNVDSIVVKLMKRESPIVD
                     VDNPNAFFKMTKGAFSQRRKTIYNNYQNLFENGKEQKETIMQWLERADIDPKRRGETL
                     SIQEYARLYAELENFPNLSL"
     gene            11477..11743
                     /locus_tag="PTC08_000368"
     CDS             11477..11743
                     /locus_tag="PTC08_000368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002473059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Veg family protein"
                     /protein_id="HDK5681902.1"
                     /translation="MPKSIGDIKNSLDCQLGNRIVLKANGGRKKTIERCGVLTETYPS
                     VFVVELDPEKHNFERVSYTYADVLTENVKVSFVEDELQQEVIAH"
     gene            12134..12982
                     /locus_tag="PTC08_000369"
     CDS             12134..12982
                     /locus_tag="PTC08_000369"
                     /EC_number="2.7.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011276766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase"
                     /protein_id="HDK5681903.1"
                     /translation="MIYETAPAKINLTLDTLYKRDDGYHEVEMIMTTIDLSDRLSFEK
                     RNDSRIVLKVDETFIPSDDRNLAYRAALLMKETYQIKQGVTITLEKNIPVAAGLAGGS
                     SDAAATMRGMNRLFELNRSLDELSELSAAIGSDVPFCVYGTTALCKGRGEILEILPKT
                     PSAWVIVAKPQAGLSTPEIYGGLDLSQPFPVHTEQCLKAIEENDYDALCKSLSNRLEP
                     VSMQLQPEIAKIKTNMLNNGADGALMSGSGPTVYGFAQRERQARHIFNAVSGCCNDVY
                     LVRTLG"
     gene            13004..13825
                     /gene="purR"
                     /locus_tag="PTC08_000370"
     CDS             13004..13825
                     /gene="purR"
                     /locus_tag="PTC08_000370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011276765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pur operon repressor"
                     /protein_id="HDK5681904.1"
                     /translation="MRYKRSERIVYMTQYLINNPNKLVPLTYFVTKFEQAKSSISEDV
                     QIIKETLVKEGLGTVETISGASGGVKYRPQMQKDEAQAVIEEVIALLQEKERLLPGGY
                     LFLSDLMGNPALLKRVGRLIATIYMQEELDAIVTIATKGISLANAVASVLNLPVVVIR
                     KDNKVTEGSTVSINYVSGSTRKIETMVLSKRTLKEHSNVLVVDDFMRAGGSINGVMNL
                     MNEFKAHVKGVSVLVESKEVKQRLIEDYTSLVRLSDVDEYNQEFKVESGNSLSKF"
     gene            13850..14230
                     /locus_tag="PTC08_000371"
     CDS             13850..14230
                     /locus_tag="PTC08_000371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HDK5681905.1"
                     /translation="MKIINTNNAPKAVGPYSHASIVNGLVYTSGQIPLNLEGEIVSDD
                     VEKQTEQVLENLKAVLDAAGSDLNHVVKVLIFLSDMENFQKVNEVYTKYFDTHRPARS
                     AVEVARLPKDVKIEIEMVAEVKEI"
     gene            14309..14623
                     /gene="spoVG"
                     /locus_tag="PTC08_000372"
     CDS             14309..14623
                     /gene="spoVG"
                     /locus_tag="PTC08_000372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septation regulator SpoVG"
                     /protein_id="HDK5681906.1"
                     /translation="MKVTDVRLRKIQTDGRMKALVSITLDESFVIHDLRVIEGNSGLF
                     VAMPSKRTPDGEFRDIAHPINSEMRQEIQDAVMKVYDETDEVLPAQKPTSDASEDTEE
                     VE"
     gene            14906..16270
                     /gene="glmU"
                     /locus_tag="PTC08_000373"
     CDS             14906..16270
                     /gene="glmU"
                     /locus_tag="PTC08_000373"
                     /EC_number="2.3.1.157"
                     /EC_number="2.7.7.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-N-acetylglucosamine
                     diphosphorylase/glucosamine-1-phosphate
                     N-acetyltransferase GlmU"
                     /protein_id="HDK5681907.1"
                     /translation="MQKHAIVLAAGKGTRMKSKQAKVLHQVAGKPMIGHVIDQVRASG
                     VDQVVTIVGHGAESVKEKLGDTSLYSFQQEQLGTAHAVKTAAEHLSAKEGITLVVCGD
                     TPLITSATLSRLVAHHEQEGAQATVLSATASQPFGYGRIVRDVQGQLMEIVEEKDAND
                     SQKAITEISSGIFAFDNQTLFEMLERVDNNNAQGEYYLPQVLTLILQNKGKVAVYHTD
                     DFEEIMGVNDRVALSRAEKAFRQRINTYHMQNGVTLIDPDSTYIGAEVEIGADTIIEQ
                     GVQLSGHTVVGEGVTVGQYSQVHNSHIYDAVTIKHSVITDAVVGAKSTVGPFAQLRPG
                     ADLGKETKVGNFVEIKKARLDDEAKVSHLSYIGDAEIGARTNVGCGSITVNYDGVNKF
                     KTIVGKDAFIGCNTNLIAPVTVGDGSLIAAGSTITDDIPENSLALARSKQVTKPGYMT
                     QKEQ"
     gene            16346..17311
                     /locus_tag="PTC08_000374"
     CDS             16346..17311
                     /locus_tag="PTC08_000374"
                     /EC_number="2.7.6.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016426512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate diphosphokinase"
                     /protein_id="HDK5681908.1"
                     /translation="MLNTEYKNSSLKIFSLKGNEPLAQEVADHVGVELGKCTVKRFSD
                     GEIQINIEESIRGCDVFIIQPTSNPVNVHLMELLIMIDACKRASAANITIVVPYYGYA
                     RQDRKARSREPITAKLVADLFETAGADRMIALDLHAPQIQGFFDIPIDHLMGVPILAD
                     YFLKNKEIDPEKSVVVSPDHGGVTRARKLADILKTPIAIIDKRRPKPNVAEVMNIVGE
                     IEGRTAIIIDDIIDTAGTITLAAQALRDKGATEVFACCTHPVLSGPAKERIENSAIKE
                     LVVTNSIQLNDEQKPNNITELSVAELLAQAIVRVYERESVSVLFD"
     gene            17449..18099
                     /locus_tag="PTC08_000375"
     CDS             17449..18099
                     /locus_tag="PTC08_000375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L25/general stress protein
                     Ctc"
                     /protein_id="HDK5681909.1"
                     /translation="MASLKSIIRQGKQTRGDLRKIREAGKVPAVVYGYGTKNVSVKVD
                     EVEFIKLIREVGRNGVIELGVGSKQIKVMVSDYQYDSLKNQITHIDFLAINMTEERTV
                     EVPVHLIGEAPGAKEGGVVEQPLFNLEITATPDSIPEYIEVDISELNINDSLSVADVK
                     VSGDFTIENEAEDTIVSVVAPTEEPTEEEIEAMEGASTQEEPEVVGESSEEEAKEE"
     gene            18559..19131
                     /locus_tag="PTC08_000376"
     CDS             18559..19131
                     /locus_tag="PTC08_000376"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016426510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HDK5681910.1"
                     /translation="MKCIVGLGNIGKKYEYTRHNIGFEVIDHLLDRHQIKLDKQKFRG
                     AYTIERINGEKVMLIEPLTLMNLSGEAVAPLMDYYDVEVDDLLVLYDDLDLAQGHVRL
                     RQKGSAGGHNGMKSIIQMLGTSDFKRIRIGIDRPSNGMAVKDYVLQRFSTNEMKVMDT
                     VIQHVADAVEAFIGNEKFENVMNRYNGEAK"
     gene            19128..22640
                     /gene="mfd"
                     /locus_tag="PTC08_000377"
     CDS             19128..22640
                     /gene="mfd"
                     /locus_tag="PTC08_000377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019835392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription-repair coupling factor"
                     /protein_id="HDK5681911.1"
                     /translation="MKSIINEIINRDSRFKDLAEQVGQSNVLVTGLTPAAKASIIAEL
                     YQSDHRQVVLVTNNLYQADKIEADLLQFVPDDEVYKYPVQDMMTEEFSTQSPELMSER
                     VRTLTALANDRRGLFIVPLNGLKKLLTPKEMWRDHQMTFEVGDDIEIDALLEKLVSMG
                     YRRESVVSNIGEFSVRGGIIDVYPLLGEPIRIELFDTEVDSIRQFDVETQRSSENIDS
                     AEITTAHDYIMTEAVRQQMMTALKSAYETTRPKIDKSVRQDLKETYDSFQMVEDTHFD
                     PQILRRLVAFMYEKPTTILDYLKDNAIILVDEYNRVRETEESLSVETEDFLQNLIESG
                     KGFIGQRFMDDEAFDRMLRQFKITFFTLFTASMQMKLDDMIKFSCKPVQQFYGQYDIM
                     TSEFQRYMRQEDRVVVMVETATKKERIQAMLSEMHIPTLLEPDVDTMAAGHAAIIEGS
                     LSEGFELPYMSLVVVTERELFKSKQKKSTKKRRKTLSNAEKIKSYQELNVGDYVVHVH
                     HGVGRYLGVETLAVGDVHRDYIKIQYQGTDQLFVPVDQMEQVQKYVGSEDKSPKLYKL
                     GGSEWKKTKAKVQRSVEDIADELIALYKEREQSVGYQFGPDTAEQYAFEMDFPYDLTD
                     DQAKSIIEIKNDMESQRPMDRLLCGDVGYGKTEVAVRAAFKAVMSGKQVAFLVPTTIL
                     AQQHYETLIERMRDFPVEIHLMSRFRTPKEVRETKEGLKSGFVDIVVGTHKLLGKTVE
                     YKDLGLLIVDEEQRFGVRHKEKIKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSIIE
                     TPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNRVSSIYEKREQLQMLMPD
                     ASIGVAHGQLPERDLEETMLDFINGEYDILVTTTIIETGVDVPNANTLIIEDADRFGL
                     SQLYQLRGRVGRSSRIGYAYFLHATNRVLNEVAEERLQAIKEFTELGSGFKIAMRDLN
                     IRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEETPVPELELDLKLDAYLP
                     AEYIRNEQAKIEIYKKLRATESMEQLMDIKDELLDRFNAYPTEVEQLLDSVEIKVHLL
                     HVGVQSVKDTGKTIEILLTPKGTNDIDGEALFKNTIALGRAMKVGVQDGCMKVTLTKG
                     KQWLESLKFLAKTLEESLRLPHEI"
     gene            22630..24162
                     /locus_tag="PTC08_000378"
     CDS             22630..24162
                     /locus_tag="PTC08_000378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligosaccharide flippase family protein"
                     /protein_id="HDK5681912.1"
                     /translation="MKSNTAFNGVVVLTLGLIVVKVLSALYRVPYQNVLGDEGLYAYQ
                     QIYPIVALGVVLSSNALPSAYTQMLGHQRVSKPFFIRLCRILTSVGIVICALMFIGAK
                     VVALLMGDPQLTPMIRAASFSFVSVGALGLLRGYFQSKYEMHMPAYSQVLEQLVRVGL
                     IGVVIGLFVFQDLSIYQAGTWAIVASTAGFVVATVLLAFKSHLSTTSIDQENLQWRRF
                     FIATVVFAISHLIVILWQVVDSFTIVNMLRYGTGLTFDEAITQKGIFDRGASFIQMGL
                     IVTTTFCFVLIPLLTDTKKNGQRQQMHSYANASLKITIVISSASGIGLINLIPLLNRV
                     FFERAELTGTLSLYMLTVICVSLIMMYIALLEVHEEFRMITKALVIGIVTKGVLNIIV
                     IPLFGILGASVATVSSLVVFVVVLHHRVVQLYRLHALRKFYVKLVLALLVMTTVVQLC
                     HYLIPTETRFGGLIELLIAAMVGVGTIVFMLLYLNILSEEEWIHLPFGDKVISWEKGR
                     KS"
     gene            24159..25346
                     /locus_tag="PTC08_000379"
     CDS             24159..25346
                     /locus_tag="PTC08_000379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide pyrophosphohydrolase"
                     /protein_id="HDK5681913.1"
                     /translation="MTHQLTIIGLGNYGLDELPVSIYKLIQQQAKIYVRTKNHPVIAQ
                     LEGIAIESFDDVYEAHETFEPVYQAITERLFEYAQHEDIVYAVPGHPRVAETTTQLLL
                     QNALKHNVAVKVLGGRSFIDDVFEAVDVDPNDGFTMLDATALTVDMLNPRTATVITQV
                     YSDMVAGNLKLSLMERYPDDFEVMVVDGAHQGGAQVTRCPIYALDHDVTYTNLTSVFV
                     PKVTDETALYGDFDYADQVIARLVDDEHGCPWDKVQTHQTLKRYLLEETYELFEAIDN
                     EDDWHMIEELGDILLQVLLHTNIGRKEGYMDTREVVVSLTEKMIRRHPHIFGDESAQN
                     VDDVKSIWQTEKQAEGKKERVKFEKVFATYFLKLYDEVKNKDFTEEELKAYIEQGGNY
                     ETR"
     gene            25333..25590
                     /locus_tag="PTC08_000380"
     CDS             25333..25590
                     /locus_tag="PTC08_000380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding S4 domain-containing protein"
                     /protein_id="HDK5681914.1"
                     /translation="MRLDKYLKVSRLIKRRTLAKELSDQGRVAVNGHTAKAGTDVKID
                     DELVIQFGQKIVTVKVTGLNEHATKENAKGMFELVKEARIQ"
     gene            25618..26007
                     /locus_tag="PTC08_000381"
     CDS             25618..26007
                     /locus_tag="PTC08_000381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septum formation initiator family protein"
                     /protein_id="HDK5681915.1"
                     /translation="MAQKIQNIGNQYTSQKNAKKQRHERRKKVVKKRISVFGGILLAI
                     IIVLLIMLMVQVKGNHEASVERQKKEAQYQKLQDQEIELKEQLNNLNDEAYVEKIARD
                     EYYLSNDGEIIFKLPEDAKNDKQSGKK"
     gene            26147..26524
                     /locus_tag="PTC08_000382"
     CDS             26147..26524
                     /locus_tag="PTC08_000382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding protein S1"
                     /protein_id="HDK5681916.1"
                     /translation="MSIEVGSKLKGKVTGIKKFGAFVELPEGKSGLVHISEVADNYVE
                     NVEDHLTVGDEVEVKVLSIADDGKISLSIKKAKERPRKQKPAQKPEDFEKKLSNFLKD
                     SEDRLTSIKRQTESRRGGRGSRR"
     gene            26607..27896
                     /gene="tilS"
                     /locus_tag="PTC08_000383"
     CDS             26607..27896
                     /gene="tilS"
                     /locus_tag="PTC08_000383"
                     /EC_number="6.3.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020220126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA lysidine(34) synthetase TilS"
                     /protein_id="HDK5681917.1"
                     /translation="MQQNWKATDHIVVAVSTGIDSMVLLHQLLHDETLTYRQLTCLHV
                     HHGLREASEQEATFIQHYCEQHDIPFYMKRLDLSDVVAEGRSIQNDAREMRYQWFDTM
                     MHQLDADGLLTAHHEDDQVETIFYRLFTGKSTRSSLGMSTIEARNGYRLYRPLLNTSK
                     HVIRAYQQQHDVPYFEDTSNASNTYVRNDIRNRILPQIDENAQLKSQQLLKLKAWYDE
                     AFMLMQHEVDNFIERFVTTNAHSFTVSRYAFNALTYHVKILTLDTLLHQFEDTVTISE
                     RAYADWLQKLAGPVAQTQLMHTNQWHADIVYDKLVIMAPMQKSLDTYTIQVTEAGTYR
                     FGCYDVQITDMTDLPGSKLCIRSRQPGDRIARHDGHHKKVSRLMIDAKVPAYLRAQIP
                     IIETTHGDILAVGTLYIQQHYQGVIKIQFMGDDIHEK"
     gene            27886..28425
                     /gene="hpt"
                     /locus_tag="PTC08_000384"
     CDS             27886..28425
                     /gene="hpt"
                     /locus_tag="PTC08_000384"
                     /EC_number="2.4.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017722022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypoxanthine phosphoribosyltransferase"
                     /protein_id="HDK5681918.1"
                     /translation="MKNDVKEVLLTEEDIQQICRTLGETITADYQGKDLFCVGILKGS
                     VLFMTDLIKHIDLPLAIDFMDVSSYHGGTESTGEVQILKDLSSSIENKDVLIVEDILE
                     TGTTLKSITELLQSRRVNSLEIVTLLDKPNRRKADIEAKYVGKKIPDEFVIGYGLDYQ
                     EKYRNLPYIGTLKSEVYAK"
BASE COUNT         9138 a         4797 c         6584 g         7949 t
ORIGIN      
        1 gtaatatagt ttgtaacgtt gatatagtga atatgttaaa atcatgatgt tacgaaaagg
       61 tttaattgca taaaagaaag gggggctatg gatgcagcaa ccattaagag cgaaaatgct
      121 ggaatggcga aaaagtcaac cgatttcgat gcatgtccca ggtcataaaa atgggacaat
      181 cggtgatctt tcaatgacac aggttccata tgatatgaca gagattacag gtttcgataa
      241 tcttcatcat gctgaagaga tcttgtatga aagtatgatg caattcaata aatatccggg
      301 ttatcggggt tactttttag tgaatgggac gacaagtggt atactcgcag tcattcatgc
      361 gcttgcgtcg attccggggt atgttgctat tgcacgaaat gttcataaat cagtatttca
      421 cgcattagaa ttaggacaac aaagcgcgca aattttggcg acgtccgtga gtgagaaaac
      481 aggacaatat tgccaacctg acgttgggcg cactgattta gaacgtacga aattaggtgt
      541 cgtgacttat ccgaattatt atggtgaaac gtttgatgtg gcacatgtcg ttgaacaatt
      601 tcatcaattc aatattcctg ttcttgttga cgaggcgcat ggtgctcatt ttgatttgcc
      661 tggctttcca gagtcaagta tgcgagcggg ggcggactat gttgtgcaat cttatcataa
      721 aacattgccg agtttgacga tgagctcggt gttatggata catcaagatg ccccttatcg
      781 tgaatggatt gagtatggtt tacaagtatt tcaatcttct agcccgtctt acttgcttat
      841 ggaaagtcta gaagctgctc aagcatttta tgcatcgtat gacagtacgt tattttttga
      901 aaaaagaaag caactcattg caacacttga aaataaaggt ttaacagtga ttacaccaca
      961 agatccgttg aaattattaa ttcgatataa aggtatgacg ggctcatcgt tacaagctca
     1021 aatggaagca caggcgattg atgtcgaact gtcggatgaa aatgcggtgt tatgggtttt
     1081 accgttatgg catcatcaag atcgatttcc ttttgaagaa ctgctcgaaa ggattgaccg
     1141 gatgacttta aggccagaag cacaatcggt tcatgacaag ccaccacatt tatttacaca
     1201 accgagtaca tatcgagcaa ttggcatgca tccgtcgcgg tctatccctt atcaaaaagc
     1261 tgaagggcgt atattatccc gacatttaac accgtatcca cccggtattc cgtcactgct
     1321 aaaaggagaa atagtgacca cagatatgat aaaattaata gaatattggc agtctagagg
     1381 cttttgtgtg gaaggtctta tggatgataa aattacagtg aaggatgagt gaagatgtct
     1441 ctgtttatca caattgaagg tccagaaggt tctggcaaaa cgactgttgt tcaagcagtt
     1501 tcagaacaat tagcgcaaca ctatgacgtg atgacgacac gtgagccggg gggcgtacaa
     1561 acagcagaag cgattcgtca aattttatta gatggagaaa cgatggatgc gcgaacagag
     1621 gccttattgt ttgcggcttc gagaagggag catcttgttg caaaagtcct cccagcgtta
     1681 tcgcaaggac gacttgtcat ttgtgaccgc tttattgaca gttctttagc ataccaaggt
     1741 tatgctcgaa aaattggggt aaaagaagta caagctatta atgattttgc gattgaagga
     1801 cgatatcccg atttaacgat ttatttggat attccagctg aagttggtcg aacgcgtatt
     1861 gaaagtaatc gccgcgcaca aaatcgttta gataaggaaa gcgtggcatt tcatgaacgt
     1921 gtggttgaag gatatcagca actcatcgca caagatccca agcgttttgc ggtcattaat
     1981 gcgaatcaat cgattgaaca agttgtaact gcggcattac aagtgatttt acaaaaaata
     2041 gatgcgcagt aatgtgattt gaaaccatgt gaagccatgt actcagatat gttatactaa
     2101 acttcaagag gtgttagaaa aatgaaaatg attatagcaa ttgttcaaga ccaagatagt
     2161 caagaacttg cagacaaact cgttgaaaac aattttcgtg cgacaaaatt ggcaacaacg
     2221 ggtggcttct tgcgcgcggg taatacaaca tttttaagcg gtgtggaaga tgagcgtgtg
     2281 gaggaaatac ttgaactcat tggcggctca tgtggcaata gagaacaact tgtatcgcct
     2341 attacgccaa tgggaggtag cgcagattct tatatcccat atcctgttga agtagaggtc
     2401 ggcggtgcaa cagtctttgt catgccagtt gaatcgttcc atcaatttta aaatagtaag
     2461 gaaggttgtg acagtatgac gccaataagt catatgtata gtcgcaacct tttttattga
     2521 atagatgcgt atgtagttat ctcaacaaaa gtctgatgaa tctcttaata aatatcaata
     2581 caatgaagat gttgacgaat gaaataaagt catagtctat ccacacatat tgcggtaaaa
     2641 tggagtagta tctcatacat atccatcaat atctttacaa aaggagcgca aggttaatgg
     2701 aagtaatcga acaactcacc aaagcctatc acaaccaaaa actgtcacat gcgtatttat
     2761 tcgaaggtga tgacgccgaa gcaatgaaga cgaccgcgat agcctttgcg caactcattt
     2821 tatgtcaaga tgaagaacga tgtcgcttga aagttgaagg gcaaaaccat cctgactttc
     2881 aatatgtgat gacagatgag acgacgctca aaaaggaaca agtcgaaaac ttagtacatc
     2941 acatgaacca attgcctatt gaaggggact ataaagttta cattatccaa gactttgaaa
     3001 aattaacggt tcaaggtgaa aatagtattc ttaagttttt agaagaaccg ccgaaaaata
     3061 ccattgcgat gattatgaca accaaacccg aacaaatttt agatacgatt cattctcgtt
     3121 gtcagcatgt gtattttaaa ccaatgtcac gtgctacatt tgtgtcgcga ttaacggaac
     3181 aagataacac gttaactgta ccgattgcag agttgttaag tacgtatacg acacaacttg
     3241 aggtggcgct acaacttcat gaaagtgttg aattagctcc gatgcgtaag atgcttttac
     3301 aatggtgtga taagttgtta aatcaacgcg aaatggcatt aattggtgtt gtggaattaa
     3361 tgaaatatgc aaaaacgaga cagttacaat tgttggcgtt atctggtatg aatgcgtttt
     3421 tccaagattt aatgtacgtc aaagtgggca tggtggagcg gattactttt tcagagttgc
     3481 agtcagaata tgagacgttg gtgacacggt tgagttatca ccatttaacc tatattatag
     3541 agcaaataac agaagcacat aaaaagctca atcaaaacgt gaacgccacg ctagtatttg
     3601 agcaaattgc aattaaagtg aaagggtgac gctgatgtat gctgttgtag ggatttactt
     3661 tgaaaaggcc aatacattag aatattatgc gccaaatact acttcactca ccatagggca
     3721 gtatgtcgta gtggaatcta agcgtggcca cgaattaggt gttgtgagac atgcgccgag
     3781 agaggtatca gagcaagacg tcacactgcc attaaagcct gttttacgta tcgcaacgga
     3841 agcggattta atccaatatg aaaaaaacga agtggatgca gcgcgtgcgg cggatatgtg
     3901 taaaggattt gtcgaacaat taggtttgga gatgtgcgtc gtgaattgcg aatacatttt
     3961 agaccgttct aaaatcattt ttaattttac agcggatgaa cgtatcgatt tccgaaaatt
     4021 agtgcgtatg ctggcgcagc gcttaaaaac acgtatcgaa ttgcgtcaaa tcggcgtgcg
     4081 tgatgaagcg aaattactcg gtgggattgg tccgtgtggg cgttcgctat gttgcgcgac
     4141 gtttttagga gatttcgaac cggtctcaat caaaatggca aaagaccaaa atttatcgtt
     4201 aaatccgact aaaatttcgg gtgcatgtgg ccgtttaatg tgttgtttga aatttgaaaa
     4261 tgatttttat gaatcagcac gtgaacagtt accagatatc gggacacgta ttcaaacacc
     4321 agaaggtcat ggtgaagtcg tcagtctgaa tattattgat gtatcaatgc aagtgcgatt
     4381 agatggcatg gaacaattga tggaatacca tattgaagag ttagaaacat taaaatagga
     4441 ggtacatctg ttggatcgaa acgaattatt cgctcgctta atgcagttag aacaacacgt
     4501 tgcgcgtttg aatgaaagca tgcaggagtt aaaagcactg actgtagagc tagtggaaga
     4561 aaatgtagca ttacaactag aaaatgataa ctttaaaaca ttgatgcaac aagaacgaga
     4621 taatgtggaa gcaacgcaag ttcaagaagc agaagtagcg cctcaaaaac ccgtgaaaaa
     4681 gcagcgtcaa agtcgtgaat attttgcgaa actgtatcat gaaggtttcc atatttgtca
     4741 tgatgtattc ggtaaacatc gtcatggcga ggactgtatg ttttgtctca atgtgctaaa
     4801 tgagaagcaa gaatagaggt gctgtgatgt tacaacctgg tgaaagactg gattatttaa
     4861 tacgagaaga cttacgcatt attcaaaatg atgcggtctt ttctttttct acagatgcac
     4921 tgctattagg tcattttaca gaagtgagga aacgagatcg cattttagat atgtgtgcag
     4981 gtaatggcgt gattccatta ttgttgtcgg acaaaggaaa taatgtgatt acaggtgtgg
     5041 aaattcagcc acagcttgtt aatatggcag ttcgcagtgt tcaatacaat cacttagaag
     5101 accgtattac aatggttgaa atggatatta atgcgctcat tcaagcgtat tccccagcgc
     5161 agtttgattt aatcacttgc aatccccctt attttaaagc aaatcaaacg aatcaacatc
     5221 aacttgaagc ccacaaaatt gcgcgtcatg aaatttattg tacgttggat gattgtttgc
     5281 gtgttagcaa ccatttgtta aaagaagggg ggcgggttgt gatggtgcat cgagcagaac
     5341 gaatgctgga tttgtttgaa tctatgcgtc attatcgtat tgaaccgaaa cgtttgcata
     5401 tgatttttag taagcctgga aaagctgcac agacgattgt cgttgaaggc cgtaaagggg
     5461 gacgtcaagg tctcgatatt gcaccccctt tttatattta tgatgaacaa ggggattata
     5521 cgccagaaat gaaggagatt tattatggct aaacattata cgtatatcgt acaatgtaat
     5581 gatgcaacat tttatacggg gtatacaaat gatttggaag cgcgcatcgt caaacataat
     5641 gaaggtaaag gtgcgaagta tacaaaaacg agacgaccgg tcacattgtg ttatcatgaa
     5701 attttcgaga cgaaatcaga agcattaaag cgagaacatg cgattaaaca attgacgcga
     5761 caacaaaaaa tacaattaat tgaggagcga taacatggga gagctctatt tagtcggtac
     5821 gcccatcgga aatttagaag acatgacatt ccgagcgatt tatacgttac aacatgtgga
     5881 tctcatcgca tgtgaagata cacgtgtgac gaaaaaattg tgtcatcatt ttgagattac
     5941 aaccccttta aagtcttatc atgaccataa taaagaacag gaaactgaaa ctttgatcga
     6001 catgctagta gcaggaaaaa ctatcgcttt ggtctctgat gcgggcttac cattgatttc
     6061 ggatccgggg tatgaattgg tagttcgtgc acgtgaacaa ggtgttacag tcgtgccaat
     6121 tcctgggccg aatgcaggct tgaccgcatt gatggcgagt ggtttacctt catttacata
     6181 tacgttttta ggatttttac ctcgcaaatc gcgtgataaa acggcgttac tagagacgag
     6241 aatgtatcaa gacagtacat tgttattgta tgaatcaccg caccgtgtga aagatacact
     6301 cgaagtgatt gctcaaatcg atgctgaacg gacagtgaca cttggacgag agttgacgaa
     6361 gaagtttgag caaattacga ccgcacctgt cacatcattg ctcgaacaat tagaaacaga
     6421 cattccatta cgtggagaat ttgttgttat tatcgaaggt gccacaccaa ttgaagggac
     6481 ggcatggttt gaaacgctgt ccgttgaaga ccacgtgaca cattacattg atgaaggtat
     6541 gaaaccgaaa gcggcgatta aaaaagtcgc acaagagcgc gaaatgtcga gcaagaccgt
     6601 ctacaacatt tttcatgata ttcattagtg atacaccgta agacaaatag gttgtaacat
     6661 tgaaaaacaa ctaaatttta gatatattag ataagataag aattgaggag gagcgctgat
     6721 ggtgaaagat actttttata ttacaacacc gatttactat ccgagtggga atttacacat
     6781 tggacacgcg tattcaacag tagcaggcga tgtcattgcg cgttataaac gtttgcaagg
     6841 ctttgatgta cgctatttaa ctgggactga tgagcacggt caaaaaattc aagaaaaagc
     6901 tcaaaatgca ggaatgtcag agctagatta tttagacggt atgattaaag atattaaagc
     6961 attatgggaa aagttagata tttctaatga tgactttatt cgtactacag agcgtcgtca
     7021 tacagaagtc gttgaaaaaa tctttgaaaa attattatca aaaggcgaca tctatttagg
     7081 tgaatatgaa ggttggtatt cagtaccgga tgaaacattc tacactgaaa cgcagctggt
     7141 agaccccgtg tatgaagacg gtaaaattgt gggtggtaaa agtccagact caggtcatga
     7201 agtggaattg gtgaaagagg agagttactt cttcaaatta tccaactata ctgaccgttt
     7261 attagctttt tatgatgcgc acccagagtt cattcagccc ccttcacgta aaaatgaaat
     7321 gatcaataat tttattaaac ctggcttaga agacttagct gtatcacgaa cgtcttttaa
     7381 ctggggtgtc aaagtgcctt ctaacccgaa acacgtcgtt tatgtatggt tagatgcgct
     7441 tgtgaactac gtttcagcgc tcggttactt aacggatgac gaccatttat tccgtcaata
     7501 ttggccggca gacattcatt taatggcgaa agagattgtg cgtttccatt ctattatatg
     7561 gccgattatt ttaatggcat tagatttacc attacctaaa aaagtgtttg cacacggttg
     7621 ggtattgatg aaagatggta aaatgagtaa gtctaaaggg aatgtgatgg atccgaatgt
     7681 attgattgat cgttatggtt tagatgcgac acgttactat ttaatgcgtg aattaccatt
     7741 cggttcggac ggtgtattta cacctgaagc tttcgtggat cgtacgaatt ttgatttagc
     7801 gaatgattta ggtaacttag tcaatcgtac aatttcgatg attaataagt attttgatgg
     7861 cgagcttcct gcatatcaag gtccaacgca tgaactggat gaagaaatgg aacaaatggc
     7921 gttggatacg gtacgagctt atcatgaaag catggataag ttgcagtttt ctgtcgcatt
     7981 atcaacagtt tggaagttga tcagtcgtac gaataaatat attgacgaaa caacaccttg
     8041 gattttagca aaagatgaat ctcaaaaagc agcgttaggc aatgtgatgg cgcatctcgt
     8101 tgaaaacatt cgctttgcgg cagtgttatt acgtccgttc ttaacacatg ccccttatca
     8161 aatatttgaa caactgcata ttcataacga agcattacac ggctttgaag gtttggcaac
     8221 ttacggtcaa ttgacagaac cgattatggt gacagaaaag ccacaaccga ttttcccacg
     8281 tctcgatgtg gaagcggaag tgagctatat taaggcatca atgcaaccgc caaaagaaga
     8341 aagcgttgaa gaagaagtgc ctgacaaagc acaaattgat attaaagatt ttgataaagt
     8401 ggaaataaag gcagcgacaa ttattgatgc tgagaaagtt aaaaagtcta ataagttatt
     8461 gaaaatacaa gtagatcttg gttatgaaaa acgtcaaatc atttcaggca ttgcgcaatt
     8521 ttatgcacca gaggatatta ttggtaaaaa agttgcagtt gtgacgaatt tgaagcctgc
     8581 gaaattgatg gggcaaaaat ctgaagggat gattttgtct gcggagaaag atgatgtgtt
     8641 gacgttgatt agtttaccga atgcggtgca gaatggtgct gtgattaagt aggtgtttga
     8701 ggagagtgag acggtaatgt tgatgtgtct cactctttta tttcatgctg aacattttgg
     8761 ggtagtgacg gattgcggat tgctgaaacg cgctacgctt tccaaggcgc tgaagtctca
     8821 actaaatttg gcttgatgga agtgggcatt tagtggaagc caaattggat tttcgacttc
     8881 agcagatgcc ttaggagtct tgcacgattc ttgcaatctg ggtgagtgcc gcaagctggt
     8941 aataagtaat agtactttac ttgaaacaaa ttttacatga caagattagc cacatcacag
     9001 cactcttcag ttttagaggt gagagagtag atgtgccagg cgttttgttg atgtgtggta
     9061 tggtatgaat cgtggtaata gtgaagcaat acgtcaatgg aagtgtgcga ttttgataga
     9121 tggaggagga tatttatgtt aatagacact catgtgcatt tgaatgcaga tcaatacgac
     9181 aaagacctag aagatgtgat tcaacgtgcg cttgatgctg gcgtggatcg catgtttgtg
     9241 gtgggttttg atacgaagac gattgagcgc gcgatgcaat tgatagagga ttatgatttt
     9301 atttatgcca ttattggttg gcacccggtt gatgcgattg actttacaga tgaacgttta
     9361 gcgtggattg aaaagttagc ggaacatcct aaagtgattg gtattggtga gatgggttta
     9421 gattatcatt gggacaaatc accgaaagat attcaaaaag aagtattccg taaacaaatt
     9481 gcgttagcga aacgtgtgaa gttgccaatc gtcatccaca atcgagaagc gacacaagat
     9541 tgtattgaca tcttgatgga agaacatgct gaagaagtgg gtggcattat gcacagtttt
     9601 agcggttctc cagaaattgc cgatgtggtc attaataagt taaactttca catttcttta
     9661 ggtgggccag taacatttaa aaatgcgaaa caaccgaaag aagtggcaaa acatgtacca
     9721 ttggagcgtc tccttgtcga aacggatgcg ccttatttaa caccgcaccc ataccgcggt
     9781 aaacgtaatg aacctgcacg tgtcacttta gttgctgaag aaattgcgca gttacgtggc
     9841 atttcatatg aagaggtcgc acgtcaaact acggaaaatg caaaaaaatt atttgggtta
     9901 taatgaaaca aacatgatga caaatataaa gaaggtgcaa aggtgaaagt caatgaattt
     9961 attgtagtag aaggtcggga tgatacggag cgtgttcaac gtgctgtcac atgtgatacg
    10021 attgaaacaa atggaagtgc gattgaccaa gatattttag atgtcatacg tcaagcacaa
    10081 gagacacgtg gtgtgattgt attaacggac cctgatttcc cgggtgataa aattagaacg
    10141 acgattcgtg aagcagtgcc gggtgtgaaa catgccttta ttgaccgtga acgtgctaaa
    10201 aataaacgtg ggaaaattgg tgtcgaacat gcgagtttag aagacattcg tgaagcattg
    10261 atgcacgtgt caacgccgtt atctgaagca catgaaacga ttagtaaaga tgtgctcatt
    10321 gacctaggct taatcattgg tcctgccgca agacaccgtc gaaatcttct aggcaaacgt
    10381 ttgcacattg gtcattctaa cgggaagcaa ttattaaaaa agcttaatgc attcggctat
    10441 acggaagcgg atgtacgtcg agcattagaa gaagaggagt aaagatatgc atgataaaga
    10501 tattgccacg ccatcaagaa cacgtgcact attaaatcaa tatggcttta actttaaaaa
    10561 aagcttaggt caaaactttt taatcgatgt gaatattatt aatcgtatta ttgatgcaag
    10621 tgggattgat cacatgacag gtgtcattga aattggtcct gggatggggt cgcttacaga
    10681 acaacttgct aaaaatgcac aacatgtttt agcgttcgaa atcgatcaac ggcttattcc
    10741 tgtgcttgac gatacattat cgccttataa caatgtgact gtaatcaacg aagatatttt
    10801 aaaggcaaat gttgctgagg cgattcaaca gcatttgtcc cactgtgaga aaattatggt
    10861 ggttgcgaat ttgccttatt atattacgac accaatttta ttaacattgc ttgagcaaga
    10921 tttaaatatt gatgggtatg ttgtgatgat gcaaaaagaa gtcggtgaac gtttaaatgc
    10981 gcaagtcggc actaaggcgt acggctcttt atccattgtg gcacaatatt atacggagac
    11041 ttcaagggtg ctcacagtgc cgaaaacggt ctttatgcca cctcctaatg tcgattctat
    11101 cgttgtgaaa ttgatgaagc gcgagtcgcc cattgtggat gttgacaacc cgaatgcatt
    11161 tttcaaaatg acgaaaggcg catttagcca aagacgtaaa accatttaca acaactatca
    11221 aaacttattt gaaaatggta aagaacaaaa agagaccatt atgcaatggc ttgaacgagc
    11281 ggatattgat ccaaaacgtc gcggtgaaac gttatcgata caagaatatg cacgtttgta
    11341 tgcggaattg gaaaatttcc cgaatttgtc cttataaatt gattgacaac agctttccac
    11401 cttgctaaaa ttaaaatttt atttgacgaa acacttctag gtgtgttata atacacttgt
    11461 agcgaggtgg agcaatatgc caaaatctat tggagacatc aaaaactctc ttgattgtca
    11521 attaggaaat cgtattgtac ttaaagctaa tggaggtcgc aaaaaaacaa ttgaacgttg
    11581 cggagtactc actgagactt atccgtcagt gttcgttgta gaattggacc cagagaaaca
    11641 taattttgaa cgtgtatctt atacttatgc agatgtattg actgaaaatg tcaaagtatc
    11701 atttgtagaa gatgagttac aacaagaagt aatcgcacac taaatataca gagactatct
    11761 acataataac cattctactg atgtgagtag agtggttttt tattatgcag ggatgtcttt
    11821 caacacacag tcttattggg caaagtgaca acatttcccg ccaaatccct tttcacttat
    11881 atcgatgagg acgaaaataa cttgcatcaa actttttaat ttgaagcatt gttgttaaac
    11941 taaggcgatg aaaacttttg tgatacgtta ttcttgtaca cgtgaaggtg cgttgaacac
    12001 cggtgatacg atgatttgct ttttatagag ccttatcact tgttggggtt gggaatttta
    12061 atctgtatga gcgcactttg aaacggttat gtgttaaaat cacagtaata ccatttggaa
    12121 agaggaaatt ggaatgattt atgaaacagc gcctgctaaa atcaatttga cattagatac
    12181 tttgtacaaa agagatgacg gttatcatga agttgaaatg attatgacaa caatcgattt
    12241 gagcgatcgg ttatcatttg agaaaagaaa tgattcacgt atcgttttaa aggttgatga
    12301 aacgtttatt ccctctgatg atcgtaattt agcttatcga gcagcacttt tgatgaaaga
    12361 aacttaccaa attaagcaag gtgtaacgat tacattagaa aagaacattc ctgtcgcagc
    12421 aggacttgca ggaggctcaa gtgatgcagc agcaaccatg cgtggtatga atcgtttgtt
    12481 tgaattaaat cgctcacttg atgaattgag cgagctttct gcggcgattg gttcggatgt
    12541 gccattttgt gtgtacggca ctacggcact ttgtaaagga cgtggtgaaa ttctcgagat
    12601 tttaccgaaa acgccttcag cttgggtcat tgttgctaaa ccacaagctg gcttatcgac
    12661 accagagatt tatggtggtt tagatttgag tcaacctttc ccagttcata cagagcaatg
    12721 tttaaaagct attgaagaga atgactatga tgcgctatgc aaaagtttgt ctaaccgctt
    12781 agagcctgtt tctatgcaac tccaaccgga aattgctaaa attaaaacaa atatgctcaa
    12841 taacggtgcg gatggtgcat tgatgagtgg tagcggcccg acagtatacg gttttgcaca
    12901 acgcgaacgc caagcccgcc atatttttaa tgcagtgagc ggttgttgta atgatgtcta
    12961 tctcgtaagg acactggggt aaaaaagaga aagggtgaca gcaatgcgat acaaaagaag
    13021 cgaacgtatt gtttatatga ctcagtactt aatcaataat ccgaataagc ttgtaccact
    13081 gacatatttt gtaaccaaat ttgaacaagc gaaatcatca attagtgaag acgttcaaat
    13141 tattaaggaa acattggtta aagaaggatt gggtacagtg gaaactatat ctggcgcaag
    13201 tgggggtgtg aaatatcgcc cacaaatgca aaaggatgag gcgcaagcag tgattgaaga
    13261 agtgatagca ctcttgcaag aaaaagagcg cttattacca ggagggtatt tatttctttc
    13321 tgatcttatg gggaatcctg cattgttaaa acgtgtgggc cgactcattg cgacgattta
    13381 catgcaagaa gagttggatg cgattgtgac gattgctaca aaagggattt cattggcgaa
    13441 tgcagttgcg agtgtgctca atttaccagt tgttgtcatt cgtaaagaca ataaggttac
    13501 agaaggttca acagtttcaa tcaattatgt ttcaggatcg acaaggaaaa tcgaaacaat
    13561 ggtattatct aaacgtacgt taaaggaaca ctcaaacgtg ttagttgtgg atgactttat
    13621 gcgtgctggt ggttcaatta atggggttat gaatttaatg aatgagttta aagcccacgt
    13681 aaaaggggta tcagtacttg tagaatccaa agaagtcaaa caacgactga ttgaagatta
    13741 tacttcctta gtacgtctct ctgatgtcga tgaatacaat caagaattta aagtagagtc
    13801 agggaacagt ctatctaaat tttaaagggt aaaaggagcg ttcaattatt tgaaaatcat
    13861 taatacgaac aatgcaccta aagcagttgg accttactca catgcttcaa tcgtcaacgg
    13921 actcgtttac acttctggtc aaataccatt gaatctggag ggggaaattg taagcgatga
    13981 tgtagaaaag caaactgagc aagtgttgga gaatctaaaa gcggtattgg atgctgcggg
    14041 gtcagatttg aatcacgttg ttaaagtttt aatcttctta tcggatatgg aaaactttca
    14101 aaaagtgaat gaagtgtata caaaatactt tgacacacac cgtcctgcga gaagtgcagt
    14161 ggaagtcgca cgtttaccga aagatgtaaa aatagagatt gaaatggttg ctgaggttaa
    14221 agagatataa tcaaaaaagt taagattatg acttcttaaa aaacatacta tataaagtat
    14281 acttaaatta ctataggggg ctcactacat gaaagtgaca gacgttagac ttagaaaaat
    14341 acaaacagat ggcagaatga aagctttagt gtcaattacc ttagatgaat cattcgttat
    14401 tcacgatttg agagtgattg aaggtaattc aggcttattc gtagctatgc caagtaaacg
    14461 cacaccagat ggtgaattcc gtgatatcgc tcatccaatc aactctgaaa tgagacaaga
    14521 gattcaagat gcggtaatga aagtatatga tgaaactgat gaggttttac ctgctcaaaa
    14581 accaacatca gatgcgtcag aagatacaga agaagttgaa tagttttttt ctttttatga
    14641 ggttttgtca ttgtggtgat ggcaaagcct tttttattac gaagaagttg tctagtaatc
    14701 attttttatt gggtgacatc aaatttttat ctaagtggaa gtgaaagtgg tatcgacaaa
    14761 atcgtttcac ggcgcatggt gaacaacgga tagctataat gtctaaggtg ttgaaagggc
    14821 ttttataggt ttacgccttg aaagtgtgtg cacggttaaa ttataattgt atagaagtgt
    14881 ataagataat ggagggttca ttgccatgca aaaacatgca atcgttttag cagcgggtaa
    14941 aggcacaagg atgaaatcga agcaagctaa agtgctgcat caagttgccg ggaagccgat
    15001 gattggtcat gtcattgatc aagtgcgtgc ttctggtgtc gatcaagttg tcactattgt
    15061 cggtcacggc gcggaaagtg taaaagagaa gttaggggat acttctttat atagctttca
    15121 acaagaacaa cttggtacgg cacacgctgt aaagacagca gctgagcatt tatcagcaaa
    15181 agaagggatt acacttgtcg tttgtggtga cacaccgtta attacaagtg caacattgtc
    15241 tcgtttggtg gcacatcacg aacaagaagg cgcacaagct actgtattgt cagcgacagc
    15301 gtctcaaccg tttggctatg gtcgtattgt ccgtgatgta caaggtcaat tgatggaaat
    15361 tgttgaagaa aaggatgcca atgacagtca gaaagcgatc actgaaatca gttcgggtat
    15421 tttcgctttt gataatcaga cgctatttga gatgttagaa cgtgtggata acaacaatgc
    15481 gcaaggtgaa tactacttgc cgcaagtttt aacgttaatt cttcaaaata agggtaaagt
    15541 cgcagtttat catacggatg atttcgagga gattatgggt gtcaatgatc gtgtggcgtt
    15601 aagtcgagct gaaaaagctt ttcgccaacg tatcaatacg taccacatgc aaaatggcgt
    15661 aaccttgatt gatcctgatt caacttatat tggtgctgaa gttgaaatcg gtgcagatac
    15721 cattatcgag caaggtgttc aattgtcggg acataccgtt gtcggtgaag gtgtcacagt
    15781 aggtcaatat tctcaagtac acaatagtca catttatgac gctgtgacga ttaagcattc
    15841 ggtgattact gatgcagtcg ttggtgccaa gtctacagta gggccattcg cacaattacg
    15901 tccaggcgca gatttgggca aagaaacgaa agtcggcaac tttgttgaaa ttaaaaaagc
    15961 gcgcttagac gacgaagcaa aagtatcaca tctcagttat attggcgatg cagaaattgg
    16021 ggcaagaacg aatgtcggtt gcggttccat cactgtgaac tatgatggtg tcaataagtt
    16081 taaaacgatt gtaggtaaag atgcgtttat cggctgtaat acgaatctca tcgcaccagt
    16141 gactgtagga gacggatcgc ttattgcggc aggttctaca attacagacg atatccctga
    16201 aaatagctta gcactcgcgc gctcaaaaca agtgacaaaa ccgggataca tgactcaaaa
    16261 agagcaatag tttcacatga aagactaaaa acggtctgtt gtaaataaaa agagtgacca
    16321 aaacaaaatt ggaggattca taataatgtt aaacaccgaa tataaaaatt cgtctttgaa
    16381 aattttctcg ttgaaaggta acgaaccact tgcacaagaa gtcgcagatc atgtaggtgt
    16441 tgaattaggt aaatgtacag ttaaacgttt tagtgatggt gaaattcaaa ttaatattga
    16501 agaaagtatt cgtggttgtg atgtgttcat tatccaaccg acttctaacc ctgtaaatgt
    16561 acatttgatg gaacttctta ttatgattga tgcatgtaaa cgtgcttcag cagcaaacat
    16621 tactattgtt gtgccatact acggttatgc acgccaagac cgtaaagccc gcagccgtga
    16681 gccaattaca gcgaagttag ttgctgattt attcgaaaca gctggcgcgg atcgtatgat
    16741 tgcattagat ttacatgcac ctcaaattca aggattcttt gatattccga ttgatcactt
    16801 aatgggtgta ccgatcttag cggactattt cttgaaaaat aaagaaatcg atccagaaaa
    16861 aagtgttgtt gtatcaccag accatggcgg tgtgacacgc gcacgtaaat tagcagatat
    16921 tctgaaaaca cctatcgcaa ttattgataa acgtcgtcca aaaccgaatg tggcagaagt
    16981 gatgaatatc gtgggtgaaa ttgaaggacg cacagcgatt attattgatg acattattga
    17041 tacggcgggt acgattactt tagcggcgca agcgttaaga gataaaggtg ccacagaagt
    17101 attcgcatgt tgtacacacc cagtattatc aggtccagcg aaagagcgta ttgaaaattc
    17161 agccattaaa gaattagtcg taacgaactc aatccaatta aacgacgaac aaaagccaaa
    17221 caatattaca gaactttctg tagcagaatt gttagcacaa gcgattgtac gtgtgtatga
    17281 acgcgaatct gtgagtgtat tatttgacta atgcatgttg acttattatc agccctcgtg
    17341 taaaatgggt ctgttcgtgt caatacggac aaatacacac ttgcaagcaa cataggttga
    17401 tgggcaagtg cagcacaaca gtgtgcaatg gaaaggtgga aaatgaatat ggcttcatta
    17461 aagtctatta ttcgtcaagg taaacaaact cgcggtgact tacgtaagat ccgtgaagca
    17521 ggtaaagtac cagcagttgt ttatggttac ggtactaaaa acgtatcagt taaagtagat
    17581 gaagtagaat tcatcaaatt gattcgtgaa gttggacgta acggtgtgat tgaacttggt
    17641 gtaggttcaa aacaaatcaa agtaatggta tcagattatc aatacgactc acttaaaaac
    17701 caaattacac atattgactt cttagcaatc aatatgactg aagagcgtac tgtagaagta
    17761 cctgttcact taattggtga agcacctggt gctaaagaag gtggcgtagt tgaacaacca
    17821 ttattcaact tagaaattac tgctacacca gacagcattc ctgaatatat cgaagtggat
    17881 attagcgaat taaacatcaa cgacagctta tcagtagctg acgttaaagt ttctggtgac
    17941 ttcactatcg aaaacgaagc tgaagataca atcgtttcag ttgttgcacc tactgaagag
    18001 ccaactgaag aagaaatcga agcaatggaa ggcgcatcta ctcaagaaga gccagaagtt
    18061 gtgggtgaat cttcagaaga ggaagcaaaa gaagaataaa aatgatatca atatcattgc
    18121 aagaagagct gagccttatg ggtgtcagct ctttttagcg ttgtcgttaa cttttggttc
    18181 aaggcgacac gatggagaca aatgttaaaa aaggggcgta ccaagcgatg gccctttttt
    18241 gaaatggcca atgaaaaaga atgcctgctg aaaagtagtt caatatgaga aacgtgaaaa
    18301 aagcattcgt gatttgtgcc gttgcataat gtgaaaagac atgattaatg gtgttaaacg
    18361 tggcatgaac gcctattcgg atttgaatgt catcgtatcg cgatttcgaa ttttcgataa
    18421 gttgtgagtg tttcgaatag aagttctata ataggaatag gacgattcac caagttcaag
    18481 gtcaaatgtg ttaatatagg gatattaaac gcaaatgatg aatagagcgt aggagaaaga
    18541 caaacatgga ggtcaatgat gaagtgtatt gtaggcttag gtaatatagg gaagaaatat
    18601 gaatatacga gacataatat cggttttgaa gtcatcgatc atctacttga tagacatcaa
    18661 atcaaacttg acaagcaaaa gtttcgtggt gcatatacga tagagcgcat caatggtgaa
    18721 aaagtgatgc tcatcgaacc attgactttg atgaatttgt caggtgaagc agtggcccct
    18781 ctgatggatt actatgatgt tgaggttgat gatttgctcg tattgtacga tgatttagat
    18841 ttagcacaag gtcatgtacg tttgcgtcaa aaaggtagcg ctggtggtca taacggcatg
    18901 aaatcaatca tccaaatgtt aggcacgagc gactttaaac ggattcgtat tggtatcgat
    18961 cgtccttcga atgggatggc ggtcaaggat tatgtattac agcgcttttc aaccaatgaa
    19021 atgaaagtga tggatacagt cattcaacat gtggcagatg cagtggaagc atttatagga
    19081 aacgaaaaat tcgaaaatgt aatgaatcga tataatggtg aggctaagtg aaatcaataa
    19141 tcaatgaaat tataaataga gactcgagat ttaaagattt agcagagcaa gtcggtcaat
    19201 ccaatgtgct cgtgacagga ttaacccctg ccgcgaaagc atctatcatt gcggaacttt
    19261 atcaatcgga ccaccgccaa gttgttttgg ttacaaataa tttatatcag gcggacaaga
    19321 ttgaagcaga tttattacag tttgttccgg atgatgaagt gtataaatat cctgttcaag
    19381 atatgatgac agaagaattt tcaacgcaaa gcccagaatt gatgagtgaa cgcgtacgaa
    19441 cgttaacagc actcgcgaat gatcgtcgcg ggttatttat cgtcccctta aatggcttga
    19501 aaaagttgct cacacctaaa gaaatgtggc gtgaccatca aatgactttt gaagtgggcg
    19561 acgatattga gattgacgcg cttttagaaa aattagtgag catgggatac cgacgtgaat
    19621 cggtcgtgtc caatattggt gaattttcgg tgcgtggtgg cattattgat gtgtatccgt
    19681 tactaggtga accgattcga attgaactgt tcgatacgga agtggattcg attcgtcaat
    19741 tcgatgtaga aacgcaacgt tcatcagaaa atatcgacag cgcggaaatt acgacagcgc
    19801 acgattatat tatgacagag gccgtccgac aacagatgat gacagctttg aagtctgctt
    19861 acgaaacgac gagacctaaa attgacaagt cagtacgcca agatttgaaa gagacgtatg
    19921 atagttttca aatggttgag gatacgcatt ttgatcccca gatattgcgt cgtttagttg
    19981 catttatgta tgagaagcct acaaccattt tagattacct taaagataat gcgatcattt
    20041 tagttgatga atacaatcgt gttcgcgaaa ctgaggaatc tttgtcggtt gaaactgaag
    20101 actttttaca aaatttgatt gaaagtggta aaggctttat cggacagcgt tttatggatg
    20161 atgaggcatt tgatcgaatg ttacgccagt tcaaaattac gtttttcacg ttatttactg
    20221 cctcaatgca aatgaagtta gacgacatga ttaagttttc atgtaaaccg gtccaacaat
    20281 tttacgggca atacgacatc atgacttctg aatttcaacg ctatatgcga caagaagacc
    20341 gtgtcgtcgt catggtagaa acggcaacga aaaaagaacg tattcaggcg atgttaagcg
    20401 aaatgcatat ccctacactg ttagagcctg acgttgacac aatggcggcg ggacatgcgg
    20461 caatcattga gggcagcttg tcagaaggct tcgaactccc ttacatgtcg ctcgttgtgg
    20521 tgacagaacg tgaattgttt aagtctaagc agaaaaagag cacgaaaaag cgtcgtaaaa
    20581 cattaagtaa tgcggaaaaa attaaatcat accaagaatt gaatgtcggc gattatgtcg
    20641 tgcacgtgca tcatggtgta ggtcgctacc tcggcgtgga aacactagcg gtaggtgatg
    20701 tacaccgcga ctatattaaa attcaatatc aaggcacaga ccaactcttt gtacctgttg
    20761 atcaaatgga gcaagtgcaa aaatatgtag gttcggaaga taaatcgcca aagctgtata
    20821 agttaggcgg tagtgaatgg aagaaaacga aagcgaaagt tcagcgcagt gtagaagaca
    20881 ttgcggacga actgatagct ttatataaag aacgcgaaca atctgtcggt tatcaatttg
    20941 ggccagatac agcagaacaa tatgcgtttg aaatggactt cccatatgat ttaacggatg
    21001 accaagcgaa atcgattatc gaaattaaaa atgacatgga aagccaaaga cctatggacc
    21061 gtctgttatg cggtgacgta ggttacggta aaactgaagt ggctgtcaga gcggcgttca
    21121 aagcagttat gtcagggaaa caggtcgcat ttttagtacc gacaaccatt ttagcgcaac
    21181 aacattatga aacgttgatt gagcggatgc gtgatttccc tgtcgaaatt catttaatga
    21241 gccgcttccg tactcctaaa gaagtgcgcg agacaaaaga aggtttgaaa tcaggctttg
    21301 tggacatcgt tgtagggaca cataaattac tcggtaaaac agttgagtat aaagatttag
    21361 gtttactcat tgtcgatgaa gaacagcgct ttggtgtgcg tcataaagaa aaaattaagc
    21421 agttaaaagc aaatgtcgat gtactgacat taactgcgac accgattccg cgtacgttgc
    21481 atatgagtat gttgggcgtg cgtgacctgt cgattattga aacaccacca gaaaaccgtt
    21541 tcccagtcca aacgtacgtc ctagagcaaa acactaactt tattaaagaa gctttagaac
    21601 gggaactttc tcgagatggc caagtgtttt atctctacaa ccgtgtcagt tccatatatg
    21661 aaaaacgtga acagcttcaa atgttgatgc cagacgcttc aattggtgtc gcgcacggtc
    21721 aattgccaga acgtgacttg gaagaaacga tgctcgactt tattaatgga gagtacgaca
    21781 ttttagtgac gacgacgatt atcgaaacag gtgtcgatgt accgaatgca aatacactca
    21841 ttattgaaga tgccgatcgt tttggcttga gccagctgta ccaattacgt ggacgtgtcg
    21901 gtcgttcgag ccgtatcggg tatgcgtatt tccttcacgc aacgaaccgt gtattgaatg
    21961 aagttgctga agaacgtctc caagcaatta aagaatttac cgaacttggc agtggcttta
    22021 aaattgcgat gcgtgacttg aacattcggg gtgcaggtaa cttactcggt aaacaacagc
    22081 acggtttcat tgattcggtc ggctttgact tgtactcaca aatgttagaa gaagcggtga
    22141 acgaaaaacg tggcattaaa gaagaaacgc cggttcctga gcttgagtta gatttgaaac
    22201 tcgatgcata tttaccagct gaatacattc gtaatgaaca agcgaaaatt gaaatttaca
    22261 agaagttgag agcgactgaa agtatggagc aattgatgga tattaaagat gaattgcttg
    22321 atcgtttcaa tgcgtatcca acagaggttg agcaattgtt agattctgta gagattaaag
    22381 tccatctcct tcacgtcggt gtgcagtccg tgaaagatac aggcaaaacg attgaaattt
    22441 tattaacccc aaaaggtaca aatgatattg acggtgaagc gttatttaaa aatacaatcg
    22501 cgctcggtcg tgcaatgaaa gtcggcgtac aagatggctg tatgaaagtg acgttgacaa
    22561 aaggaaaaca atggctcgaa tcactgaaat ttttagcgaa gacgttggaa gaaagtttga
    22621 gactcccgca tgaaatctaa cacagcattt aatggtgtcg tcgtcctgac gttaggattg
    22681 attgtcgtca aagtattgag tgctttgtat cgggtacctt atcaaaatgt actcggtgat
    22741 gaaggattgt atgcgtatca acaaatttat cctattgtcg cattaggtgt ggtcttgtcg
    22801 agcaatgcgt tgccgagtgc gtatactcaa atgttagggc atcagcgtgt atcaaaacca
    22861 ttcttcattc ggttatgtcg aatattgaca agtgtaggta tagtcatttg cgcgctgatg
    22921 ttcatcggtg cgaaagtggt cgcgttgtta atgggtgatc cgcaattaac gccgatgatt
    22981 cgagcggcaa gtttcagttt tgtttctgtt ggggcactcg gtttgttgcg tggttatttt
    23041 caatccaaat acgaaatgca catgcctgcg tattcacaag tgttggaaca attggttcgc
    23101 gtcggtttaa tcggtgttgt gattggattg tttgtctttc aggacttgtc gatttatcag
    23161 gcgggaacat gggccattgt cgcgtcaact gcaggttttg tagtagcgac ggtgttgtta
    23221 gctttcaaaa gtcatctttc tactacgtct attgatcaag aaaacttgca gtggcgtcgt
    23281 tttttcattg cgacagtcgt ctttgcaatc agtcatttaa tcgttatttt atggcaagtg
    23341 gtcgatagct ttaccattgt gaatatgttg cgttacggta ctggactcac gtttgatgaa
    23401 gcgattacgc aaaaagggat tttcgatcgt ggtgcgtcct ttattcaaat gggacttatc
    23461 gtcacaacga ccttctgttt cgtgttaatt ccactattga cagatacgaa gaaaaacggg
    23521 cagcgccaac aaatgcatag ttatgcgaat gcctcactga agattacgat tgtgatcagc
    23581 agtgcgagcg gtattgggct gattaattta ataccgttac ttaaccgtgt cttttttgaa
    23641 cgcgcagaat tgacaggcac attgtcgcta tatatgttga ctgtcatatg cgtgtcactc
    23701 attatgatgt acatcgcgtt gctagaagtg catgaagaat ttcgtatgat tacgaaagcg
    23761 ctcgtcatcg gaatcgttac aaaaggtgtg ctcaacatca tcgtgattcc gttgtttggt
    23821 attttgggtg caagtgtagc gacggtgagt tctttagtcg tgtttgttgt ggtcttacat
    23881 catcgtgtcg tacagctcta tcgtcttcac gctttgcgaa agttttatgt gaaactggtt
    23941 ttagctttat tggtcatgac aactgttgta caattatgtc attatcttat tcctactgag
    24001 acacgtttcg gaggtttgat tgaacttctt attgcagcga tggtcggcgt gggtaccatc
    24061 gtcttcatgc tcttgtacct caatatttta agtgaagaag agtggattca tttaccgttt
    24121 ggcgacaaag tcatttcgtg ggagaaagga agaaagtcat gacacaccaa ctgacaatta
    24181 taggattagg gaactacggt ttagacgaat tacccgttag tatttacaaa ttaattcaac
    24241 aacaagctaa aatttatgtg cgtacgaaaa atcatcccgt aatcgcacaa ttagaaggca
    24301 tcgcgatcga aagttttgac gatgtatacg aagcgcatga aacgttcgaa ccagtgtatc
    24361 aagcgataac agagcgattg ttcgaatatg cgcaacatga agacattgtg tatgctgtgc
    24421 cgggtcatcc gcgcgtggct gagacaacga cacagttatt gttgcaaaat gcactcaaac
    24481 acaatgtggc agttaaagtg ttaggtggac gtagctttat tgatgatgta tttgaagcgg
    24541 tcgatgtcga cccgaacgat ggctttacga tgttagatgc aacagcgtta acggtggaca
    24601 tgctcaatcc gcggacagca acagtcatta cgcaagttta tagtgacatg gttgccggta
    24661 acttaaagtt atccttgatg gaacgttacc cggatgactt tgaagtgatg gtcgttgacg
    24721 gggcacatca aggtggggca caagtgacgc gttgtccaat atatgcatta gatcatgatg
    24781 tgacgtatac gaatttaacg agcgtctttg tgccgaaagt gactgatgag acagccttgt
    24841 atggtgactt tgattatgcg gatcaagtga ttgcgcgttt agttgacgat gaacatggtt
    24901 gcccttggga taaagtccaa acgcaccaaa cgttaaagcg ctatttgctt gaagaaacgt
    24961 acgagttatt tgaagcgatc gataacgaag atgattggca tatgattgaa gagctcggcg
    25021 acatcttgtt acaagtgttg ttgcatacga atatcggtcg taaagaaggg tacatggata
    25081 cgcgtgaagt cgtagtaagt ttgactgaaa agatgattcg tcgtcatccg cacatttttg
    25141 gtgatgaaag tgcgcaaaat gtcgacgatg tgaaatcgat ttggcaaact gaaaagcaag
    25201 cagaaggtaa aaaagaacgc gttaaatttg agaaagtatt tgcgacctat ttcttaaaat
    25261 tgtatgatga agtcaaaaat aaagacttta cggaagaaga acttaaagct tatatagaac
    25321 aggggggcaa ttatgagact cgataagtat ttaaaagtgt cacgattaat taaacgtcgt
    25381 acactcgcta aagaactgag cgatcaaggt cgtgttgcgg tgaatgggca cactgccaaa
    25441 gcggggacag acgtgaaaat agatgatgag ttagtgattc aatttggtca aaaaatcgtt
    25501 acggttaaag tcacaggatt aaatgagcat gcgacaaaag aaaatgctaa agggatgttc
    25561 gaactcgtta aagaagcgcg cattcaataa agggtaaata aagaaaggtg acgccccatg
    25621 gcccaaaaaa ttcaaaatat cggcaaccag tatacaagcc aaaaaaatgc taaaaagcaa
    25681 cgacatgaac gccggaaaaa agttgtaaaa aaacgcatct ctgttttcgg agggatattg
    25741 cttgccatca ttattgtgct gttaattatg ttgatggtac aagtgaaagg gaaccacgaa
    25801 gcatcagtag aacgtcaaaa gaaagaagca caatatcaaa agttacaaga tcaagaaatt
    25861 gaattaaaag aacaactgaa caatctgaat gatgaagcgt atgtcgaaaa aatcgcgaga
    25921 gatgagtact atttaagtaa tgatggtgaa attattttta aattaccaga ggacgccaag
    25981 aacgataagc agtccgggaa aaagtagcaa acttttagac ttggattgtc aacaagtaaa
    26041 aaacgtaaag aaaaaaggcg atgttcaatt tgccattgtg aaaacagtta aacaaacgta
    26101 taatagaact atatatcgaa ctaaagcggg aggatgcatt ataacaatgt caatcgaagt
    26161 aggaagtaag ttaaaaggta aagtcactgg tatcaaaaaa tttggtgcat tcgtggagtt
    26221 gcctgaagga aaaagtgggc tagttcatat tagtgaagta gcagacaact atgtcgaaaa
    26281 tgtagaagac catttaacag tcggtgatga agtagaagta aaagtattat ctattgcaga
    26341 tgatggtaaa attagtttat ctattaaaaa agcaaaagag cgcccgcgta agcaaaaacc
    26401 ggcgcaaaaa ccagaagact ttgagaaaaa gctatctaac tttttaaagg atagtgaaga
    26461 cagacttact tctattaagc gtcaaacaga atcaagacgt ggcggcagag gttcacgtcg
    26521 ttaagtattg ataatcactt agaggttgag aaacgaagga taactttgac tctcagcctc
    26581 tattttaatg taggagtggc atcgatatgc aacaaaactg gaaggctaca gaccatatcg
    26641 tcgttgcggt ttcgacagga attgatagta tggtactgct gcatcaatta ctacatgatg
    26701 agacattaac gtatcgccaa ttgacttgtt tacatgtaca tcatggcttg agagaggcgt
    26761 cagagcaaga ggcaacattc attcaacatt actgtgaaca gcatgacatt ccgttctata
    26821 tgaagcgact ggacttgtcg gatgtggtgg cagaaggacg aagtattcaa aatgatgcaa
    26881 gggagatgcg ttatcaatgg tttgatacga tgatgcacca attggacgcg gacggtttgc
    26941 tcactgcgca ccacgaggat gatcaagtgg aaacgatttt ttaccggttg tttactggga
    27001 aaagtacacg cagttcgctc ggcatgtcaa ccattgaagc gcgtaacgga tatcgtttgt
    27061 acagaccgtt gttaaataca tcgaaacatg tcattcgagc gtatcaacag caacatgatg
    27121 tcccttattt tgaagatacg tcgaatgcaa gcaataccta tgtccgcaat gatattcgca
    27181 atcgaatctt gccacaaatt gacgagaatg cgcagttaaa gtcgcaacaa ttgctaaaac
    27241 ttaaagcgtg gtatgatgaa gcgttcatgt tgatgcaaca tgaagtagac aactttatcg
    27301 agcgatttgt gacaacaaac gcacattctt ttactgtatc aagatacgct ttcaacgcct
    27361 tgacgtacca tgttaaaata ttaaccttgg atacattgtt gcatcaattt gaggataccg
    27421 ttacgataag tgagcgtgcg tatgctgatt ggttacaaaa attagctggt ccggtcgcac
    27481 aaacacaatt gatgcacaca aaccaatggc atgctgatat cgtgtatgat aaattagtaa
    27541 taatggcgcc aatgcaaaaa agcttagata catatactat acaggtgact gaagcgggaa
    27601 cgtatcgctt tggttgttat gacgttcaga ttactgacat gactgatttg cctggctcaa
    27661 aattgtgcat tcgttctcgt caacccggcg accgtattgc acgacatgat gggcatcata
    27721 aaaaagtatc gcggctgatg attgatgcaa aagttcctgc atatttgaga gcacaaatac
    27781 cgatcatcga aacgacgcat ggagacattt tagctgtagg cacgttgtat attcagcaac
    27841 actatcaagg tgtaattaag attcaattta tgggagatga catacatgaa aaatgatgta
    27901 aaagaagtgt tattaacgga ggaggacatt caacagattt gtcgtacatt aggtgaaaca
    27961 atcacagcag attatcaggg gaaagatctg ttttgtgtcg gtattttaaa agggtcagtc
    28021 ttattcatga cagacttaat taaacatatc gacttgccac ttgcgattga ttttatggat
    28081 gtatcaagtt atcacggtgg tacagaatca acaggtgaag tacaaatttt aaaagattta
    28141 agttcatcaa tcgaaaataa agatgtgtta atcgttgaag atattcttga aacgggtacg
    28201 acattaaaat ctatcacaga attattacaa tctcgccgtg tgaactcatt agaaattgtg
    28261 acattactcg ataaaccaaa ccgtcgtaaa gcggatattg aagcgaaata tgttggtaaa
    28321 aaaattcccg atgagtttgt gattggctat ggtttggact atcaagaaaa gtatcgtaac
    28381 ttaccttata ttggtacgct aaaatctgaa gtgtacgcaa aataatcgcg ttgaatggag
    28441 catgtcccta gcgttgataa aagtcaat
//
LOCUS       DANHOL010000013        27950 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.013, whole genome shotgun sequence.
ACCESSION   DANHOL010000013 DANHOL010000000
VERSION     DANHOL010000013.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 27950)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27950)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27950
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.013"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(341..796)
                     /locus_tag="PTC08_000385"
     CDS             complement(341..796)
                     /locus_tag="PTC08_000385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020220171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topology modulation protein FlaR"
                     /protein_id="HDK5681919.1"
                     /translation="MYRRIVILGMPGSGKSTLCAKLGKALHIPAYHLDRYAWEGDTLV
                     PAEVLQRHVIEIVKTDAWIMDGTYEGTLDDRLARADLLIWLIDSRWRCILRVIRRYVM
                     SKIHPQTGDNPDIISWEFIRYIWQYERHKTARLLCIYQPHADHCELWRR"
     gene            1023..1535
                     /locus_tag="PTC08_000386"
     CDS             1023..1535
                     /locus_tag="PTC08_000386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4242 domain-containing protein"
                     /protein_id="HDK5681920.1"
                     /translation="MSLFLLETQDLSFAKTPAELEEKVQSLSEQAGPELIEVQVTEDL
                     SHGYFIVEGHSEEEAKQFLEDGSIQVSLVKEVRLVGKDLDEVKQGDVSIDYLVTWNIP
                     EGITMDQYLERKKKNSVHYEEVPEVQFQRTYVCEDMTKCVCLYNAPDEDSVRRAREAV
                     NTPIDGIEKI"
     gene            1706..2446
                     /locus_tag="PTC08_000387"
     CDS             1706..2446
                     /locus_tag="PTC08_000387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDK5681921.1"
                     /translation="MIEIKTLHHYFGEHHVIQDFNLTIPKGKIVSFIGKSGCGKSTLL
                     NIIGGFLTPTSGDVVIDQTRKTAPSSDCLMLFQHHNLLPWKTINDNIKLGLTKDVSNA
                     EINTYLSTVGLAHQGTQFPVALSGGMQQRVAICRALIHQPRVVLLDEPLGALDAFTRY
                     KLQDELIKLRTHTDATLILVTHDIDEALYLSDEIVLLGDGAQILNQYTIQQSHPRNRS
                     DEALLSIRRQIMEDFALNHHMAEPEYYL"
     gene            2460..3407
                     /locus_tag="PTC08_000388"
     CDS             2460..3407
                     /locus_tag="PTC08_000388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDK5681922.1"
                     /translation="MQKRALILFIIALFIVTGCTPNSQNHVNQDKKVLKIGYLPITHA
                     ANLMMTKEIKQNNPNYDIELVRFNNWPDLMDALNSGRIDGASTLIELAMKAKSKGSPI
                     KAVALGHHEGNVVLGQNGHDLHDFNNDNNYMFAIPHRYSTHYLLLEEMRKQLHIGHDH
                     FHYHEMAPAEMPAALSEQRIDGYSVAEPFGALGEQLGKGHLLQHGSDIMPDAYCCVLV
                     LQEDVIQHHHQAAQQFVSDYKKAGYQLDDKAKSVDVMSKYYKQDRKILEQSAKWTSYG
                     DLTIQQEGYDNIAQLVKAHHLFDAPSYDQFVDNSLYKEG"
     gene            3413..4177
                     /locus_tag="PTC08_000389"
     CDS             3413..4177
                     /locus_tag="PTC08_000389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDK5681923.1"
                     /translation="MTAKRFKKYLRPFYTFALFLLLWQCVIWIGHYQPVLLPGPFHVA
                     QSIGNFIITGEIFLHLGISLYRFIVGFLIAVMLAIPLGILLGRNRILYQAIEPLLQTI
                     RPISPIAWSPFIVLWFGIGSLPAIFIIFIAAFFPIIFNTIKGVRTIDNHYLKIADNLN
                     LHGWSLYRDIIFPGAFKHIMSGIHVAVGTSWIFLVSGEMIGAQSGLGFLIVDSRNMLN
                     LEDVLSAIFFIGIFGFLIDRIISYLESLILKRFGES"
     gene            4197..5240
                     /locus_tag="PTC08_000390"
     CDS             4197..5240
                     /locus_tag="PTC08_000390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA/acyl-ACP dehydrogenase"
                     /protein_id="HDK5681924.1"
                     /translation="MTTIETLIEQELNPYLVEIDNGQYYAQPFIQHLFENGHFSKDNL
                     KQNAQVVEKVAYSCLTTAFCLWCQLAFSTYLKQAQQAALHEDLQQQILSGQALGATGL
                     SNPMKSFNALETFNLTHHYEGDQLIVNGKLPAVSNIGYDHYFGAISQNIKTNELVMFI
                     LQANTDGLTLEEKTNFFGVNGSATYSIIFDNVAVPESQIITKDAEKFAATIRPQFVAL
                     QIPIALGSIQSSLDLIDQFSNAQNGINAYLEYDVKNYKKQFETLREQYYALLDKAQGD
                     LNDHLLEVIQLKKALGYLLLEVNQASMVNGGSRAYSPKAPQARKLKEGFFFAALTPTL
                     RHLGKLEETLQMT"
     gene            5585..6756
                     /locus_tag="PTC08_000391"
                     /pseudo
     CDS             5585..6756
                     /locus_tag="PTC08_000391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729733.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            7044..8615
                     /locus_tag="PTC08_000392"
     CDS             7044..8615
                     /locus_tag="PTC08_000392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl CoA:acetate/3-ketoacid CoA transferase"
                     /protein_id="HDK5681925.1"
                     /translation="MKMCTWAAIPSLVKTGDVIGLAALTVSNLPAALLSSLIEHYNQH
                     HEPTQLTMMMANDISSRGLATELDDFVERHMVDRVIMSIMTASPRTAQAIKHNELEAY
                     FLPQGVIATHYRQTNAITPGVITKIGLNTHIDPRYQGGRVNDKTTASLVSFLNIDGED
                     FLHYQLPPLDVALLRGTYADEQGNIYMDEEAHLGESYSLALNAKSNGGTVIVQVKAIV
                     DKGQQNPNHVYIPGSLVDYVYVVEDTSQHRQVVQTMYQPTLSGQARIDIIPEPPLPFN
                     VRKLMLRRAAQFLSIGDTMSIGYGINNELTNLLHEEHVNDLVQPIMDIGIFGGFIGSR
                     EHFGMNYNSDVRMRHELTWDYIYNGGVSIALMSFAEVDQHGNVNVSYFGNRMNGCGGF
                     IDISQSVQKLILTGTLIAGAKLSIENQQLSVVEEGHTQKFVETVSNIDFNASYAKSLH
                     QEVFFVTDRAVFELQEDGLTLIEVAPGLDIEQDIIAQMGFTPKISPQLKEVDPTMYQA
                     KWGQLRQMIQSNRIV"
     gene            8634..10148
                     /locus_tag="PTC08_000393"
     CDS             8634..10148
                     /locus_tag="PTC08_000393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl--CoA ligase"
                     /protein_id="HDK5681926.1"
                     /translation="MNFDWIKTRADFDVEKPAVIDHLKGTQWSYQQLNIRADHMAHYL
                     TKQGIQKGDVVGVLAPNDVALLDLLFACFKTGAVFLPINWRLNPKEIAAIVEDSTLKL
                     LFYAEKHLSSLNEVNPKYLHMDIDSDAYNQIVDPSQHSVFKAINVESTDLAALIYTSG
                     TTGVPKGVMFSYESFVHNGANIELTYKFNSDYLTIISTPMFHVLGFNDTVLPTLMAGG
                     TLVLQRYFNGEELNNMIAQYHPDFLIMIPTMYYSTLTQDNFNPEHFRAMKYVIQGGSQ
                     PLPSIQQAFKKHGINIINGYGLTEAPLVLVNTPENARQKPMSIGKAVMFVDAKVLDDN
                     KNEVGLNEIGELAIRAKNVTPGYWNKPEETAKIFHNQYLLTGDLAKKDVDGDIFIIDR
                     KKELIITGGENVLPSEVENALAEHPLIDRCVVVGYEHPKYGESIAAAIILREQPEDYV
                     DQLDQHMRERLAGYKVPRMYLPVTHMPLNSTQKPDKLAITKIMNDKAQQQTSEQ"
     gene            10185..11396
                     /locus_tag="PTC08_000394"
     CDS             10185..11396
                     /locus_tag="PTC08_000394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase family protein"
                     /protein_id="HDK5681927.1"
                     /translation="MTTDKKNTLKQLYPEDILSIAKDLTDGEVALLQQLNDLLESKYR
                     QDINQHWVDATVPEDYFQDIGNLNYFTNPLLYQGREEAKTPSQLFQFFMSYTIARFDV
                     SLATLLGVHQGLGHNTFLFGGSSEQVAKYVPKLQSHELRTCFALTEPNHGSDVAGGLE
                     TVAERHGDEWVINGAKKWIGGAHVSDVIPVFAVNKDTGKPHCFVVRPDQEGVEIEVLQ
                     HKIALRIVPNAEIRLNHVKVKEADRLQNITSFKDIAKILYSTRAGVAYMATGALAGTL
                     RATLSYVKERQQFGKSISQYQLIQEKLAMIQGNLTHAMAMSAQLARMQENGEYDEVAT
                     STAKMMNALRLRESVAMGRGITGGNGILAGEHDIARFFSDAEAIYTYEGTHEMNALVI
                     GRALTGVSAFV"
     gene            11442..13703
                     /locus_tag="PTC08_000395"
     CDS             11442..13703
                     /locus_tag="PTC08_000395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase/isomerase family protein"
                     /protein_id="HDK5681928.1"
                     /translation="MTIRKVTVLGAGTMGAQLAALLVNAGLKVKLLDIVIDHNDPNKI
                     SKAAYDKITHPKKPLLFDLALASHLTYGNFEADLANDDADLYLEAVKEDLEVKHQLWQ
                     QVAQTAKPEALFATNTSGIPIEAIAKAFGPEDKKRFFGLHFFNPPRIMKLVELIPNAE
                     TDPTLIDNVQTFTQEVLGKGVIVVNDVPGFVANRIGTQTMNDIMYRAEQQGFSITEID
                     ALTGKIIGRPKTGTYALSDLVGLDIAVSVIRGLQQVPEEQPYFQDVKLVDTLYEAGAL
                     GRKTKQGFYKKARKQKQRLVYDVDEQDYVPLTQPELPILTTFTKDLAHNLDVIFNATD
                     RAGQFLWETLRNNFYYAARNVPKATDDFQDIDRALVWGFNWKLGPFQLWDLMGFDRVK
                     TRIEAELGTLPEWIQQIEDGFYGECETIDVVTPIEHQLDKILWQRKDSQLAIVNAHQL
                     LLKLRSYNNVITDAFNDDLVEAIDMLENEPYSSMVIYADGPHFSVGANLYEMKKAYET
                     NQIDKRIAPSIDRLHASFNRLKYSEKPIVTAIHGRVLGGGCELALHSPFIVASSETYM
                     GLVEAGVGLLPSGGGLAEMSDRILKTTHMMNDKQASMTQLLMTVGLAKVSTNAFEAQR
                     YGFLRPTDTIIFNQERRVQIALQRAQYEADAHYMPATERQYLALGKDFLSLAQGQLDA
                     QRLGHYISKHDYDIALRIATVLSGGDLPRNTYIQQRYIQQLEKVHFLELIKTEKTYDR
                     ITYMLENGKPLRN"
     gene            13727..14908
                     /locus_tag="PTC08_000396"
     CDS             13727..14908
                     /locus_tag="PTC08_000396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiolase family protein"
                     /protein_id="HDK5681929.1"
                     /translation="MREAYIVAYGRSAVAKAKKGALFHERPDDVAAEVLKGVLNRIDG
                     AFHPDMVEDVIVGNAFPEGLQGQNIARTIALRAGLPNSVPGQTVNRYCSSGLQTIALA
                     ANQIMAGQGDILVAGGIEFMSAVPMGGNEPTNNPTLQQQDVGASYPMGLTAENVAETY
                     QVAREDQDAYAVQSHQRATEAQQKGKFTDEIIPIRVNKVSYDENGPHVDTEIFDTDEL
                     VRPDTHMEALSQLPTVFKADGTVTAGTSAPLSDGVGFVVLMSKEKVTALGVTPIARFV
                     GYKAVGVDPKLMGIGPAFAIPEVLDLTHLTIDDIDLIELNEAFASQTIASMREVGLSE
                     EKTNVNGGAIALGHPLGATGAILTARLLAEMKKRSNVRYGMVTMCIGVGMGAAGVFEL
                     V"
     gene            complement(14970..16301)
                     /gene="gtfB"
                     /locus_tag="PTC08_000397"
     CDS             complement(14970..16301)
                     /gene="gtfB"
                     /locus_tag="PTC08_000397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020220167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="accessory Sec system glycosylation chaperone
                     GtfB"
                     /protein_id="HDK5681930.1"
                     /translation="MVNLFEYFNSDTRELYETLRISGHHDETIVLVDDGFLPEGIRSP
                     YQFFANYQVPDKQRARYFNEVPVPRFWEIEGNNDEAWVKDMSDRRAMIYFHPSEKRRL
                     VSHVEWLNRKGQLQYVDHYNQHGFRYAQTVYDLTGNMIFRRYLDQQGNEVIYENFVAS
                     SVILTWKGEQYHFSDSIDFYTFFLKAIDVNLENIVINSLSTPFLILYQLDIPGNDILF
                     WQETSYGEIPGNMRVILEKDTPRHCRILIPEREEYENIYAQLTDEERQFIAHSGYLYN
                     YQSENNYTMNILTMTNSDQIENLEAIVQSCPFAQFHIGAVTEMSSKLTAFERYANVHL
                     YQAIELDTVETVYRKCDVYLDINNGGEIINAVKKAFDFNMLILGYSDIAHNRRFTAPE
                     NLFEKEKDASALIQALKDINLKKRYFKLRLQYQQDHANETTIEAFNQIFKA"
     gene            complement(16294..17802)
                     /gene="gtfA"
                     /locus_tag="PTC08_000398"
     CDS             complement(16294..17802)
                     /gene="gtfA"
                     /locus_tag="PTC08_000398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="accessory Sec system glycosyltransferase GtfA"
                     /protein_id="HDK5681931.1"
                     /translation="MTIYNINFGIGWASSGVEYAQKYRAEALRGLDVPLKFVFLDFMS
                     SENIQTLTSNLGFQDDEVIWLYQYFTDIKIAPTTYTIDDIKSSIHEEVVREEVDGSVR
                     WLYLEQPGSFITCYLKNEDEPYVDCAEFVINNKLVRKDYYSYTRTFSEYYAPADQKAK
                     LYMRHYYNEDGSVVYTEYIDEGTHVYAFKDQLFYTKEEFVAYFIQNLKLTSEDIVIYD
                     RATKVGQAMLQNKGDSKVGVVVHAEHFSENATDEDHILWNNYYEYQFTNVKEIDFYIT
                     ATERQKEILSQQFKQYLNAEPPIYTVPVGSLNQLNKPASPRHAYRMVTASRLASEKHI
                     DWLVRAASIAKKEVPELTFDIYGEGGERESIENWIEKLGAHDYIRLLGHQKLDDIYKN
                     YPLFVAASTSEGFGLTLMEAVGSGLGMIGFDVNYGNPTFIRDGKNGYLVPIEVKEDSN
                     EKIIDSLAQAIIRFFNDGPVDPHETSYAIATPYLIENTRQKWKELIEEVLHG"
     gene            complement(17818..20205)
                     /gene="secA2"
                     /locus_tag="PTC08_000399"
     CDS             complement(17818..20205)
                     /gene="secA2"
                     /locus_tag="PTC08_000399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="accessory Sec system translocase SecA2"
                     /protein_id="HDK5681932.1"
                     /translation="MSQSLHKTINKMRLRRLKRILKHIQQYEKSFQTLPDDVLQQKTV
                     TFKRQLLQKETTLEAILPEAYALVREASRRVLGMFPKDVQVLGAIVLHEGNIAEMQTG
                     EGKTLTATMPLYLNALTGKGAYLITTNDYLAKRDYMEMKPLFEWLGLSIALGFVDIPD
                     YEYEKGEKQAIYQHDIIYTTGGRLGFDYLIDNLAESREGKFLPTLNYGIIDEVDSIIL
                     DSAQTPLVISGAPRVQSNLFQVVNTFVQTLENKRHFKMKKTKKEIWLTADGIEAANAY
                     FGVDNIYDAPYFDLVRNINLCLRAQFLFENNMDYFVYQGEVVLIDRINGRMMHGTKLQ
                     SGLHQAIEAKENVEMSMDMSVMATITFQNLFKQFNVFAGMSATSHLGEKEFLDLYSKV
                     VIQIPTHRPIQRIDYPDRVFKNIEDKHQAIIERVKTLYTEQRPVLLITRTAESAEYFS
                     AALFALDIPNNLLIAQNVAKEAQMIAEAGQLRAVTVATSMAGRGTDIKLAEGVPELGG
                     LAVIISEHMENSRIDRQLRGRSGRQGDPGTTQIYISLEDYLVKRWSDHQISRIKRLEK
                     FDTHTLQNSRLFQKHVRKIVKRAQRLSEEQGIKVRETSNEHEKSISVQRELVYKERNR
                     VLQFKSLEEIQLEQLALEVFEEAFEHTHFTVSEWVDYIYKNLSFQYKGQLEGVDLRDI
                     NAVTQYLLKLFKQQLAYQRQHLDDYFYTYFVQKAILKAIDSNWIKQVDHLQRLKNSVN
                     TRQNGKRNPIFEYHKVALESFELMTDAIKKDIVKYLCQSITEKEDDRHLIVHFPN"
     gene            complement(20202..21128)
                     /gene="asp3"
                     /locus_tag="PTC08_000400"
     CDS             complement(20202..21128)
                     /gene="asp3"
                     /locus_tag="PTC08_000400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="accessory Sec system protein Asp3"
                     /protein_id="HDK5681933.1"
                     /translation="MSDKHPFNIRWTHVTKDTFMYGTKLKWSSTGVLFENALMPSGIV
                     IHEWKMMTDFQTDVNVPDLPILKKNCTYHFYFDYDVQPENSIYFKVIFKRRNGTTCGF
                     QIIKTHEADVTVPEDTFSYVIQMINAASTQLLFRQITIKEARLEIHRKDGVRISSMQN
                     PNVNVARTTLIFAPKEGLDSELIKGIQNCMLVTGWDVKASTYEITHLVEMIKEKTKGY
                     RCQLVGYDKRSNKMAKLIGSHLKATIFVTSDTDNAQENAPNIHDAKDSTIVIYQGNET
                     VTQSCQWLDAVLNKSHQLRGLNVQRLNGGQIE"
     gene            complement(21118..22662)
                     /gene="asp2"
                     /locus_tag="PTC08_000401"
     CDS             complement(21118..22662)
                     /gene="asp2"
                     /locus_tag="PTC08_000401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="accessory Sec system protein Asp2"
                     /protein_id="HDK5681934.1"
                     /translation="MKQRYKMLQIGGENYASHFKDRDEVSWTSMPLDSLSDLEELKKL
                     VEEEKQFDFVFVQVPYSEMLMQAFRLVSQPYNTYVDQRFWNSFFEAEEVVRTRFIRCF
                     SYDSEEDCIKRLMALAFSKQYGDRIHPIHCKVNPLFKGETYYEGRHQLVLKGNFGETY
                     TPILSWNMYLYYDRYKVNEIWLEYTSSPHVEVSYTLRLYENLNMDNLIREFVLEGERL
                     IEPFAIPSMDKDAYIFVTAKAKGEGTLKVGNIHKRWSRMEHGQFILGGQRWSSEDRGE
                     FIHFFHPGDLKPPLNVYFSGYRTAEGFEGYYMMEKFKAPFLLISDLRLEGGGFYLGND
                     AFENQIKKVIQDTLEWLGFKEDEMIMSGLSMGSFGALYYGAQLNPAAIVVGKPLVNIG
                     GIAENMRLMRPEDFGTALDILLTNERGLDDEAIERLNQKFWTTLNQNQIDQTLFAISY
                     MEHDDYDLYAFQNLLSALSRQGARVMSRSTPGRHNDDTPTITSWFSHFYFMIMESQFG
                     RVRDER"
     gene            complement(22646..24211)
                     /gene="asp1"
                     /locus_tag="PTC08_000402"
     CDS             complement(22646..24211)
                     /gene="asp1"
                     /locus_tag="PTC08_000402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="accessory Sec system protein Asp1"
                     /protein_id="HDK5681935.1"
                     /translation="MKHFIPAWYTTDDWWRSQALPFHRTLKVNEFDELISLMNIHLKN
                     KAPFEMMVLNYSPNLRLFLHRQELFEATYWSLFDEIQGFTHQTPRPIDYRQFNWPNGT
                     EFVHSLFLIRALTGPHMYSEIQFSQEGYLLWIETFEKGVQKNRCIFDDRGFLSSFLSC
                     DAHGQFAEHYYMTANGDWIMKEDLLLGGVTIHPDYAHRFKYAYYDNMPALIDEYINHY
                     KTKISSKDVIITASDVRHNPIISRHFSTQRLCFSVYQQRENALSDEGMASIKEGPYCL
                     IDTMENERRIADCGILSSETQKRLRITPFDVRITPNVSNQLHESLIGVWIDGIDQGRL
                     VTIVNYLINELECRPQTRVVFLTRREEYQVPEWIQAEVNRIQNFFKERQTESKVLQEF
                     PQKGKRDSIVYASLKSVPFEIDVAEAVSTLRLVIDLNEEPDLFLQICCLGAGLPQISR
                     METDYVKHGRNGYVISNDADLTEGIAYFLDYLKHWNHAYAYAMKLAKAYESNEILKML
                     DDWLEGETHEATL"
     gene            complement(24222..25445)
                     /gene="secY2"
                     /locus_tag="PTC08_000403"
     CDS             complement(24222..25445)
                     /gene="secY2"
                     /locus_tag="PTC08_000403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="accessory Sec system protein translocase subunit
                     SecY2"
                     /protein_id="HDK5681936.1"
                     /translation="MKNNRITKIINQYEYKIFYKRIAFTILILLIYILGSKITIVDEN
                     AMRQHDSAFYKLAVSNMGGDIHQLNVFSLGLGPWLTAMIIISLITYKNMEKAMHQTRA
                     EKHYKEKFLTLGLSIIQGYFVINQFVRHTDAERFTELLLLLILVTGAMLMMWLADQNM
                     RYGIAGPMPIVLLSVIKSMFTQSLPIVSIEILMLVVMVILIIVALFILLLTELIEYRI
                     HYRDIIEMPTPGQPTYLAWKINPGGSISIMISLSVFLLLTSTINLIFNMVTGKTPHLQ
                     WLSFGHYMGVTIYLILQTVLGYLLSRLIVNTKQNTKDFLKNGNYFIGIRPGADTGNYL
                     NHLAKRLCWFGTTIVTAIIGVPLYISLLVPDLSEYIYFAVQLMIMVYLAMNITETMRT
                     YLYFDKYGAFLNQYW"
     gene            complement(25554..>27950)
                     /locus_tag="PTC08_000404"
     CDS             complement(25554..>27950)
                     /locus_tag="PTC08_000404"
                     /inference="COORDINATES: protein motif:HMM:NF012948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HDK5681937.1"
                     /translation="EFVSAVSSLSSEASNGSTTREGASTFVSTVDSLKDKASNNGTAS
                     EFESVVKSVHGSMSVSASASTSASTSTSEAVSTEASEFVSAVNSLSSEASNGSTTREG
                     ASTFVSTVDSLKDKASNNDTASEFESVVKSVHGSMSVSASTSASASTSTSEAVSTEAS
                     EFVSAVDSLSQVTSNGSTTREDASTFVSTVDSLKDKASNNGTPSEFESVVKSVHGSMS
                     TSASASTSASTSASTSTSEAVSTEASEFVSAVNSLSSEASNGSTTREGASTFVSTVDS
                     LKDKASNNDTPSEFASVVKSVHGSMSVSASASTSASTSASTSTSEAVSTEASEFVSAV
                     SSLSSEASNGSTTREGASTFVSTVDSLKGKASNNGTPSEFASVVKSVHGSMSTSASVS
                     ASESTSASTSTSEAVSTEASEFVSAVNSLSSEASNGSTTREGASTFVSTVDSLKDKAS
                     NNGTPSEFESVVKSVHGSMSTSASASTSASTSASTSTSEAVSTEASEFVSAVNSLSSE
                     ASNGSTTREGASTFVSTVDSLKDKASNNGTASEFESVVKSVHGSMSTSASVSASESTS
                     ASTSTSEAVSTEASEFVSAVNSLSSEASNGSTTREGASTFVSTVDSLKDKASNNGTPS
                     EFESVVKSVHGSMSTSASASTSASTSASTSTSEAVSTEASESASISVSMSVSASTSAS
                     MSVSVSNSVSVSDSISVSASTSEPNSVSSSMSSSLSTSASTPSEITSSSSSSDSATVQ
                     KVVSKDEQHATNKVEKLPDTGQSTTQTGLLGGVGALLTGLGLLKKSRKQKDEETSSHE
                     "
BASE COUNT         8362 a         5867 c         5121 g         8600 t
ORIGIN      
        1 agtagaaaaa gaatcgttct attggagatg tggttataac tttattagta gtgtaaataa
       61 aactaaggcg taacacttta tttcatcact gtatgatcac atttttattc aaagttcaac
      121 tccacgtatc attaaaccac attgatactg cgataattta ctgagcatga aaagaaccct
      181 taactcaaat ttcagaagaa tgtcatcatc gcatgaacca ttatgctgaa cattcaacga
      241 gatttgtaat aagttaaggg ttcaaaacct caatcgaaat catttttatt aaattcgatt
      301 aatgaacaag acgccgttaa aatcattttg ttaagccttt tcatctccgc cacagttcac
      361 aatggtcggc atgaggctga taaatacaca acagacgcgc tgttttatga cgctcatact
      421 gccaaatata acgaatgaat tcccaactga taatatctgg attgtctccg gtttgaggat
      481 gtattttact catcacatag cgacggatga cacgcaaaat gcagcgccaa cgtgagtcta
      541 tgagccatat taacaaatct gcgcgcgcta atctgtcgtc taatgtgcct tcatacgtgc
      601 catccattat ccatgcatct gttttcacaa tttcaatgac atgtcgttgc aacacctctg
      661 ccggtacaag cgtgtcgccc tcccatgcat aacgatccaa atgatatgca ggtatatgaa
      721 gcgcctttcc caatttcgca cacaacgtcg attttcccga acccggcatt cctaaaataa
      781 cgatacgtcg atacatatac atcccctcct ttattgacat ttactattat aaaccatctt
      841 caaccaatga tacgccttcc gataacattt ttcattatta ataaaatgat tcaacaccgc
      901 acaattctat agatttgttt cttgtttatc gaaaaattct gatttatttt ctaataatcc
      961 cttgtattct gataggaatt aaggtaatat gtccatatta aaaattgttg gaggtactgt
     1021 ttatgtcatt attcttattg gaaactcaag atttatcatt cgcaaaaacg ccagcagaat
     1081 tagaagaaaa ggtgcaatct ctttctgaac aagcaggtcc agaattgatt gaagtacaag
     1141 tcactgaaga tttatcacac ggttatttta tcgttgaagg tcatagcgaa gaagaagcga
     1201 aacaattttt agaagatggg tctattcaag tgagcctagt gaaagaagtc cgtctcgtcg
     1261 gtaaagattt agacgaagtg aaacaaggtg acgtatctat cgactattta gtgacttgga
     1321 acattccaga aggtattacg atggatcaat atttagaacg taaaaagaaa aattctgtac
     1381 actatgaaga agtacctgaa gtccaattcc aaagaactta tgtttgcgaa gatatgacaa
     1441 aatgtgtatg cctctataac gcacccgatg aagattcggt gcgtcgtgca cgtgaagctg
     1501 tgaatacacc tattgacggc atcgaaaaaa tttaacgtca ttattgttat ggcgtcaatg
     1561 cacaacgtca catttgggag cgagaaatga gtagtcagtc agctatttga ttttagaata
     1621 tcacatactg tcgatacctc tttctcgctc tttcttatca ttataatccc tagtatttta
     1681 ataagattta aggaagggtg atgcaatgat tgagattaaa acgctacatc attattttgg
     1741 agaacaccat gtcattcaag actttaattt aacgatacct aaaggaaaaa ttgtcagttt
     1801 tatcggcaaa agtggttgcg gtaagtcgac actactcaat attatcggtg gctttttaac
     1861 acctacctcg ggtgacgttg taatagatca aacacgtaag acagcaccgt catcggattg
     1921 tttaatgtta tttcaacacc ataacttgtt gccttggaag acgattaacg acaatattaa
     1981 gctcggttta acgaaagatg tatcaaatgc tgaaatcaat acatatttat caacggtcgg
     2041 tttagcacat caaggtacgc aattccctgt cgcgctctca ggtgggatgc agcaacgtgt
     2101 cgccatttgt cgtgcactca ttcatcaacc gcgtgtcgta ctcttagacg aacccctcgg
     2161 cgcactggat gcttttacac gttacaaatt acaagatgaa ctgatcaaat tgcggacaca
     2221 taccgatgct acacttattc tcgtgacgca tgatatcgac gaagccctct atttatctga
     2281 tgaaattgtg cttctcgggg atggggctca aattctcaac caatatacca ttcagcaatc
     2341 tcacccgaga aatcgcagtg atgaagcatt actatcgatt cggcgccaaa ttatggaaga
     2401 tttcgcactc aatcatcata tggcagagcc ggaatattat ttgtaaagga gcgagattta
     2461 tgcaaaaaag agcactgatc ttattcatta tcgccctttt cattgttaca ggatgcacgc
     2521 caaattctca aaatcacgtc aatcaagaca aaaaagtact taaaattggt tacctgccga
     2581 ttacacatgc cgcgaatttg atgatgacga aagaaatcaa acagaataat ccgaattatg
     2641 atattgaatt agtgcgtttt aacaattggc ctgacttaat ggatgcactc aatagtggac
     2701 ggattgatgg cgcttctact ttgatcgaac tcgcaatgaa agcaaaatca aaaggttcgc
     2761 caatcaaagc cgtggcactc ggacatcacg aaggcaatgt ggtgcttggt caaaacggcc
     2821 atgacttgca tgactttaac aacgacaata attatatgtt tgccattcca caccgttatt
     2881 ccacccatta tttactattg gaagaaatgc gcaaacagct ccatatcggc catgatcatt
     2941 ttcattatca cgaaatggca cctgctgaaa tgcctgccgc actcagtgaa caacggattg
     3001 atggttattc tgtcgcagaa ccatttggtg cacttggtga acagctcggt aaagggcatc
     3061 tgttacaaca tggtagtgat attatgcccg atgcgtattg ttgtgtcctt gttctacaag
     3121 aagatgtcat tcaacaccat catcaagctg cacaacaatt tgtaagtgac tacaaaaaag
     3181 caggctacca attagatgat aaagccaaaa gtgtcgacgt tatgtcgaaa tactataaac
     3241 aagatcgcaa aatactggaa caatctgcaa aatggacgtc ttatggtgac ttaacaatcc
     3301 aacaagaggg ctatgataac attgcacaac tcgtaaaagc gcatcacttg tttgacgccc
     3361 catcatacga ccaatttgta gacaactcat tatataagga agggtgattc acatgaccgc
     3421 caaacgattc aaaaaatatt tacgcccttt ctatacattc gcactctttt tattactttg
     3481 gcaatgcgtc atttggattg gacattacca acctgtctta ttacctggtc catttcatgt
     3541 cgcacaaagt attggcaatt tcatcattac cggggaaata ttcctacact taggcattag
     3601 tttatatcgc tttattgtcg gttttcttat tgcggtgatg ctcgccattc cactcgggat
     3661 acttttaggg cgcaatcgca tactttatca agccattgag ccgttacttc agacgattcg
     3721 accgatttca ccgattgcat ggtcaccgtt tatcgtcctt tggttcggta tcggaagttt
     3781 gccagccatt ttcattattt ttatcgctgc cttcttccct atcatcttca acacgattaa
     3841 aggtgtacgt acgatcgaca accattattt aaaaattgct gacaacttga acttacacgg
     3901 gtggtcatta taccgtgaca tcatttttcc tggcgcattt aaacacatca tgtcaggcat
     3961 tcatgtcgca gtgggtacga gttggatttt cttagtatca ggagaaatga tcggcgcgca
     4021 atcaggactc ggctttctca ttgtcgactc acgcaacatg ttaaaccttg aagatgtgtt
     4081 atccgccatc tttttcatcg gtatttttgg ttttctgatc gaccgtatca ttagttattt
     4141 agaaagtctg attttaaaac gctttggaga atcttaatca ataaaggagc tacactatga
     4201 caacgattga aactttaatt gaacaagaat tgaaccctta cttagtcgaa attgataacg
     4261 gacaatatta tgcacagcca ttcattcaac atttatttga aaacggccat ttttcaaaag
     4321 ataatctaaa acaaaatgcg caagtcgttg aaaaagtggc ctattcatgc ctgacaacag
     4381 cgttttgttt atggtgccaa ctcgcctttt caacgtattt aaaacaggca caacaagcgg
     4441 cattacacga agatttacaa caacaaattt tatccggcca agctttaggc gcaacaggct
     4501 tgtctaaccc gatgaagtcg ttcaatgcat tagaaacatt caacttaacg catcactatg
     4561 agggcgacca attgatcgtg aacggtaaat tgccagcagt aagtaatatc ggctatgacc
     4621 attatttcgg tgctatctca caaaatatta agacgaatga actggtgatg tttattttac
     4681 aagcgaatac agatggcctc acacttgaag aaaaaacgaa tttctttggt gtcaatggtt
     4741 cagccactta cagcattata ttcgacaacg tagcagtacc cgaatcacaa atcattacga
     4801 aagacgctga gaaatttgcg gcaaccattc gcccacaatt cgtcgcatta cagattccta
     4861 tcgcattagg atctattcaa agttcgctcg atttaatcga tcaattttca aacgcacaaa
     4921 acggcattaa tgcgtatttg gaatatgatg ttaaaaatta caaaaaacag tttgaaacgt
     4981 tacgtgaaca atattatgcg ttattggaca aggcacaagg tgatttaaac gatcatttac
     5041 tcgaagtgat tcaattaaaa aaagcgttag gttatttgtt acttgaagtg aaccaagcgt
     5101 caatggtgaa tggtggttcc cgtgcctatt cacccaaagc tccacaagcg cgtaagttga
     5161 aagaaggctt tttctttgcg gcactcacac caacattgcg tcatttagga aaactggaag
     5221 agacacttca gatgacgtaa acaattcaaa cgcgtcaccc aatcaaaagt gaaatcaccc
     5281 ttttacaaaa taatactttt cctcgggtat gcctcaggtc cccctcattt gtttgactat
     5341 catacaaaag tgtgggggag ttgaggcaag tcttttggaa aatgcagacc aaaggaagtc
     5401 gtatcccgtg aagcaaatat aaggttcagc aatttgtaat actccagttt ttgtacaaca
     5461 atgtatgcat cattgtgctc cctcccgtcc ttccaaaacc tcttatttaa catgtcgcat
     5521 acgatgttct atactaagta catatcaaac ttacttctat tgccgacaaa aggtggtcct
     5581 atttatgcaa gaaaaacttt ggtcaaaaga ctttatcttc atcactttga tcaacttttt
     5641 aatgtacatg attcactata tgttgatggt tacagtgaca atctttacca ttcatgaatt
     5701 ccatgcctct gaaagtatcg gtggtctcgc atccggtatt ttcattatcg gtatgttatt
     5761 gggacgactc gcatccggac gtatagtcga ttcgctccaa cctcaaaagt gctcgtttat
     5821 ggcgttattt tttcaattat tacagcggca ctttatttcg tgattcaaac actctcacta
     5881 ttattaattg tgcggtttat ccatggtatc gcatttggtt tttcttctac agcgacaggt
     5941 acgatttctt cacgtattgt accggaagca cgtaagggtg aaggtatcgg ttactatgct
     6001 ttaagtgtga caactgcttc tgctgtcgga ccgtttttcg gtattttatt caaccaatca
     6061 ttcggtttcc gctccatttt tacactcagt ttaggagtaa tcattgtcgc atttgttctc
     6121 gcacttgcct tgaaaccatt acctaaagta gaaatatcta cagaaagcga accgttgaaa
     6181 ggcattcgcg catttattca aaaagatgcg attcccgtct ctttcgtctt agctgtcatt
     6241 ggcgtcgcat attcaagtgt cctgtcattt ttatctgtgt atacagaatc gataaattta
     6301 ccgactgtcg cgagttactt ttttatcgtg tatgcaatca cctcttttat cacacgacct
     6361 tttacaggga aaatcttcga ccaacgcggg cacaatgcca ttatgtatcc tgtcattgct
     6421 atcttcgcga taggactttt catattgagt agcgcgcaaa gtacatggct catcacgctg
     6481 tccgctatat ttatcggtat gggttacgga acgattgtgc caagcggtca agctatcgtc
     6541 gtacaacaag caccgcgtca aaatgtaggg cttgcgacat cgacatttta cattttctta
     6601 gacttcggtg caggtttcgg tccattttta ttaggctatc tcatttcatc atggggcttc
     6661 cgtgcacttt acattgcgat ggccgtatta gcgctcatcg cactcgtgat ctattatttc
     6721 gtacacggac gccatgtcgc acaacattca aaataaacat caaaggactc gccattcaat
     6781 ggttgagtcc ttttcatttg gaagaccatt ttctcttcaa tcttacgttt ccattcctat
     6841 accgaattgc ccaattgaaa attttttcat ctcccatgta aacgactgaa aacagtgtgg
     6901 ccactcaatt tatcatactt taaaaattgt ctaatctttg tctattgtct gaaaatacaa
     6961 attttttatt tttacaatca ttgtaactgt gttatatttc atgtaagggc ttacataaaa
     7021 agtgtaaaag gaggctctgc aacatgaaaa tgtgtacatg ggcagcgatt ccgtcacttg
     7081 ttaaaacggg tgatgtgatt ggtttggccg cactgaccgt ttccaacttg cccgcagcac
     7141 tactctcatc gttaattgaa cattacaatc aacatcacga accgacacaa ttgacgatga
     7201 tgatggcgaa tgacattagt agtcgtggtc tggcaaccga attagatgac tttgttgagc
     7261 ggcacatggt agaccgtgtc attatgagta ttatgaccgc ttctcctcgc acagctcaag
     7321 cgattaaaca taatgagttg gaggcgtact ttttacctca aggggttatc gcaacacact
     7381 atcgtcaaac gaatgcgatt acgccaggtg tcattacaaa aattggtttg aatacccata
     7441 ttgatccgcg ctatcaaggt gggcgcgtca atgataagac gactgcatcc ctcgtctcat
     7501 ttttgaacat tgatggcgaa gattttttgc attatcaatt accaccatta gatgtcgcat
     7561 tacttcgagg cacatacgcg gatgaacaag gcaatattta catggacgaa gaagcacatc
     7621 tcggtgaaag ttacagttta gcgctcaatg caaagtccaa tggtggcacg gtcatcgtac
     7681 aagtcaaagc tatcgttgat aaaggtcaac aaaatccgaa ccacgtgtat attcctggat
     7741 cacttgtcga ttacgtgtac gtcgttgaag atacatcaca gcatcgtcaa gttgtccaaa
     7801 cgatgtatca accaacgtta tccggacagg cacgcattga catcatacct gagccgccac
     7861 tcccgttcaa cgtccgaaaa ctgatgttgc gacgtgcagc ccaattttta agtattgggg
     7921 acacgatgag tatcggttac ggtatcaaca atgaattgac aaaccttctg catgaggaac
     7981 acgtcaatga tttggttcag ccgattatgg acattggtat tttcggtggt tttataggta
     8041 gtcgtgaaca tttcgggatg aattacaatt ccgacgtgcg catgcgtcac gaattaacgt
     8101 gggactatat ctacaacggg ggtgtctcaa ttgcattaat gagttttgcg gaggtcgacc
     8161 aacatggcaa cgtcaacgtc tcctacttcg gcaatcgcat gaatggttgt ggtggcttta
     8221 tcgatattag tcaatctgta caaaagctga ttttgaccgg cacactcatc gcaggcgcca
     8281 agctcagtat agaaaaccaa caattgtccg tagtagaaga aggtcataca caaaagtttg
     8341 ttgagacagt gagtaacatt gatttcaacg catcgtacgc caagtcatta catcaagaag
     8401 tctttttcgt cacagaccgc gctgtattcg aactgcaaga agacggcctc accttgatag
     8461 aagtggcacc agggctagac atcgagcaag atatcattgc tcaaatgggc tttacaccaa
     8521 aaatttcacc acaattaaaa gaggtagatc ccacgatgta tcaagcaaaa tgggggcaat
     8581 tacgacagat gattcagtca aacagaatag tataaacaag ggggtataaa gagatgaact
     8641 tcgattggat taaaacgcgt gcagattttg atgtggagaa gcctgcagtc attgatcacc
     8701 ttaaagggac acaatggtca taccaacagc tgaatattcg tgcagatcat atggcacatt
     8761 atctgacaaa acaaggcatt caaaaaggcg atgtcgtcgg tgtcctcgca ccaaatgatg
     8821 tcgcattatt ggatttactg ttcgcctgct tcaaaacggg agctgttttc ttaccgatta
     8881 actggcgtct caatcctaaa gaaattgcag caattgtcga ggattcaact ttgaaactat
     8941 tgttttacgc tgaaaagcat ttaagttcac tgaatgaggt caacccaaaa tacttgcata
     9001 tggatattga ttccgatgcg tataaccaaa ttgttgaccc ctcacaacat tctgtattta
     9061 aagctattaa cgtagagtca accgaccttg ccgctttaat ttacacaagt ggaacaactg
     9121 gcgtacctaa aggggtcatg ttttcgtatg aatccttcgt gcataatggt gccaatattg
     9181 aactgacata taaattcaac tcagactacc tcactattat ttcaactccg atgtttcatg
     9241 ttttaggttt taacgataca gtgttaccga ctctaatggc aggcggcacg ctcgtcttac
     9301 aacgctattt taatggagaa gaacttaaca acatgattgc gcaatatcac ccagactttc
     9361 tcattatgat tccaacaatg tattacagca cactgacaca agacaatttc aatccagaac
     9421 attttagagc tatgaaatat gtgattcaag gaggatcgca accattaccg agcattcaac
     9481 aagcattcaa aaagcacggc atcaacatca ttaacggtta tggtctcact gaagcaccgc
     9541 tcgtgttggt taacacgcca gaaaatgccc gacaaaaacc tatgagcatc ggaaaagcag
     9601 tgatgtttgt cgatgcgaaa gtgttagatg ataacaaaaa cgaagtcgga cttaatgaaa
     9661 ttggtgaact agccattcgc gccaaaaatg tcacacctgg ttattggaat aaacctgagg
     9721 aaacggccaa aatttttcac aatcagtatt tactgactgg tgacttagct aaaaaagatg
     9781 tagatggtga catttttatt atcgatcgta aaaaagaatt gattattact ggtggcgaaa
     9841 atgttcttcc atcagaagtt gaaaatgcac tcgcggagca tccactcatt gatcgctgtg
     9901 ttgtcgtcgg ttatgaacat ccgaaatacg gcgagtctat tgcagcagcg atcattttaa
     9961 gagagcaacc tgaggactat gttgaccaac tcgaccaaca tatgcgtgag cgattagctg
    10021 gatacaaagt gccacgtatg tatttaccgg tcacacacat gccacttaat tcaacacaaa
    10081 aaccagataa attagctatt acgaaaataa tgaatgacaa agcacagcaa caaacatctg
    10141 agcaataatc agctcatcat atcactatta ggaggtttac ttttatgact acagataaaa
    10201 aaaacacatt aaaacaattg tatcctgaag atattttaag cattgcgaaa gatttaacag
    10261 acggtgaagt ggcattatta cagcaactca atgacctatt agaaagtaaa tatcgtcaag
    10321 acatcaatca acattgggtc gatgcgacgg tgcctgaaga ctattttcaa gatattggaa
    10381 acttgaacta ttttacaaac ccacttcttt atcaagggcg tgaagaagct aaaacaccga
    10441 gccaattgtt tcaatttttc atgtcgtata cgattgcacg ctttgatgtt tctttagcga
    10501 cattgctcgg tgtacaccaa ggtctcggcc ataatacatt tttattcggg ggcagttcag
    10561 aacaggtcgc aaaatacgtg cctaaacttc aatctcatga attacgtaca tgttttgcct
    10621 tgactgagcc caatcatggt tcagatgtcg cggggggact tgaaacagtc gctgaacgcc
    10681 atggtgatga atgggtcatt aatggtgcta aaaaatggat tggtggtgcg catgtgtctg
    10741 atgtcatccc ggtctttgcc gtcaataaag acacaggtaa accacattgc ttcgtagtta
    10801 gacctgatca agaaggcgta gagattgagg tccttcaaca taaaatcgca ctacgtatcg
    10861 ttccaaatgc tgaaatccgg ctcaatcatg tcaaagtgaa agaagctgac cgcctccaaa
    10921 atattacaag tttcaaagac attgctaaaa ttttatactc cacacgtgcc ggcgttgctt
    10981 acatggcaac aggtgcactt gctggtacat tacgtgcaac tctcagttat gtgaaagaac
    11041 gtcaacaatt tggaaaatca atcagtcaat atcaacttat ccaagaaaaa ctcgctatga
    11101 ttcaaggtaa cttaactcac gcgatggcta tgagtgcgca acttgctcgg atgcaagaaa
    11161 atggtgaata tgatgaagta gcgacctcta ctgcgaaaat gatgaatgca ctccgcttac
    11221 gtgaatcagt cgcaatgggt cgtggcatta ctggaggaaa cggaatactc gctggagaac
    11281 acgatattgc acgctttttc tctgatgctg aagcaatcta cacgtatgaa ggcacacatg
    11341 aaatgaatgc tcttgtcatc ggccgtgcac tgacaggtgt gtccgcattt gtataaaaaa
    11401 gcaattataa gccaaaaagc gaactatggg aggaatatat gatgacaatt agaaaagtaa
    11461 cagtcctcgg tgcagggaca atgggggcac aactcgctgc gctccttgtc aatgcaggac
    11521 tcaaagtaaa actcttagat atcgtcattg atcacaacga cccgaacaaa atttcaaaag
    11581 cagcatacga taaaatcaca catccgaaaa aaccgttact atttgacctt gcacttgcgt
    11641 cacatctcac atacggaaat tttgaagctg acttagccaa tgatgatgcg gatctttatt
    11701 tagaagccgt gaaagaagat ttagaagtta aacatcagtt atggcaacaa gtcgcacaaa
    11761 ctgcaaaacc agaagcatta tttgcgacga atacgtctgg gattccgatt gaagcaattg
    11821 ctaaagcgtt tggtccagaa gataagaagc gctttttcgg tctacatttc ttcaatcccc
    11881 cacgcattat gaaattagtc gagctcattc caaacgctga gaccgacccg acgctcattg
    11941 acaacgttca aacattcaca caagaagttc tcggcaaagg ggtgatcgtt gtcaatgatg
    12001 tcccaggatt tgtagcgaat cgtatcggca cgcaaacgat gaacgatatt atgtatcgtg
    12061 cagagcaaca aggtttctca attacagaaa tcgacgcgct cacaggtaaa attattggac
    12121 gtccgaaaac aggcacatac gcgttatctg accttgtcgg cttagacatt gcagtatcag
    12181 tcattcgagg attacaacaa gtgcctgaag aacaacccta cttccaagat gtcaagcttg
    12241 tcgacacgct ctatgaagca ggtgcactcg gccgaaaaac aaaacaaggt ttctacaaaa
    12301 aagcgcgcaa acaaaaacaa cgtcttgtct atgatgtcga tgaacaagat tatgttcccc
    12361 taacacaacc agagttacct attctcacca cttttactaa agacttagcg cacaacttag
    12421 acgtgatatt caatgcaaca gacagagctg gtcaattttt atgggaaacg ctacgcaata
    12481 acttttatta tgcagcacgc aatgttccaa aagcaaccga tgattttcaa gacatcgatc
    12541 gtgcacttgt ttggggattc aattggaagt taggcccttt tcaattatgg gacttgatgg
    12601 gatttgatcg tgtaaaaacg cgcattgaag cagaacttgg gactttacct gagtggattc
    12661 aacaaataga agatggcttt tatggagagt gtgaaacaat tgatgtcgtt acacctattg
    12721 agcatcaact tgataaaatt ctttggcaac gtaaagactc acaactcgct atcgtgaatg
    12781 cacatcaact gttgctgaag cttagaagtt acaataacgt cattactgat gcttttaacg
    12841 atgacttggt cgaagcgatt gatatgttgg aaaatgaacc ttattcaagt atggtgattt
    12901 atgctgacgg cccacatttt agtgttggtg ctaatctata cgaaatgaaa aaagcatacg
    12961 aaacgaatca aatcgataaa cggatcgcac cttcaattga tcggttacat gcaagtttca
    13021 atcgattaaa atatagcgaa aaaccgattg tcactgccat tcatggtcgt gtactgggcg
    13081 ggggttgcga acttgccctc cactctccat tcatcgtagc aagcagtgaa acatatatgg
    13141 gccttgttga agcaggggtc ggtctattac caagtggtgg tggcctcgca gaaatgagtg
    13201 accgtatttt aaaaacaaca catatgatga acgacaaaca agcaagcatg acacaacttc
    13261 ttatgacagt aggcttagcg aaagtgtcaa ccaatgcttt tgaagcacag cgttatggct
    13321 tcttacgacc aacagacacc attattttca atcaagaacg ccgtgtccaa atcgctttac
    13381 aacgtgcaca atacgaggca gatgcacatt atatgccagc gactgaaaga caatatcttg
    13441 cactaggcaa agattttctc tcactcgccc aaggacagct tgatgcccaa cgcctcggcc
    13501 actatatcag caaacatgat tatgacattg cgttacgtat tgcaacagtt ttatcaggtg
    13561 gtgacttacc acgcaatacg tatattcaac aacgttacat tcaacaatta gaaaaagtgc
    13621 atttcttaga acttatcaaa actgaaaaaa cgtatgacag aatcacatat atgctcgaaa
    13681 atggaaaacc gttacgaaac taatttaaat agagaggatg attggcatga gagaagctta
    13741 tatcgtcgct tatggccgtt ctgcagtcgc taaagcaaaa aaaggtgcgc tttttcatga
    13801 acgaccagat gatgttgcag cagaagtatt aaaaggggtc ctcaatcgta tagatggcgc
    13861 atttcaccct gatatggttg aagatgttat agtcggtaac gcattcccag aaggactaca
    13921 aggtcaaaat attgcaagaa ccattgcgtt acgtgctggc cttcctaata gtgtacctgg
    13981 ccaaaccgtt aatcgttatt gttcatctgg attacaaacg attgcactcg ctgcaaacca
    14041 aatcatggct ggtcaaggcg atattctcgt agcaggtggc attgagttca tgagtgctgt
    14101 acccatgggt ggaaatgaac caaccaacaa ccctacatta caacaacaag atgtaggggc
    14161 gtcatatcca atgggactca ctgctgaaaa tgttgctgag acgtaccaag tagcaagaga
    14221 agaccaagat gcttatgctg ttcaaagtca tcaacgtgca acagaagcac agcaaaaagg
    14281 gaaattcaca gatgaaatca tccccattcg tgtcaacaaa gtcagttacg atgaaaacgg
    14341 tccacatgtc gatacagaaa tatttgatac cgatgagcta gtgagacccg atacgcatat
    14401 ggaagcgcta tcacaattac cgactgtatt taaagctgat ggtaccgtga cagctggaac
    14461 atcagcgcca ttatcagatg gtgtcgggtt tgttgtactc atgtctaaag aaaaagtaac
    14521 agcattaggt gtcacgccta tcgcaaggtt tgtgggctat aaagcagtgg gcgtcgatcc
    14581 aaagttgatg gggattggac ctgcttttgc gattcctgaa gtactagatt taacacattt
    14641 aaccattgac gatatcgatc tcattgaact aaatgaggct tttgcatctc aaactatcgc
    14701 ctctatgcgt gaagtcgggt tatctgaaga aaaaacgaat gtgaatggtg gtgccattgc
    14761 tttaggacat ccgttgggcg caacaggtgc tattttaaca gcaagattat tggctgaaat
    14821 gaaaaaacgc tcaaatgtgc gctatggtat ggtgacgatg tgcatcggtg tcggtatggg
    14881 cgcagctggt gttttcgaac tggtttaaaa actacttatt aggaaaggga ctggacaact
    14941 ctttgtgtgt tccagtccct tttatcgttt taagctttga atatttgatt aaaggcctct
    15001 attgtcgttt cattagcatg atcttgttga tattgtaagc gtagtttaaa ataacgcttt
    15061 ttgagattga tatcttttaa agcttgtatt aaagcacttg catccttttc tttttcaaat
    15121 aaattttcag gtgctgtgaa acgacgatta tgtgcaatgt cactataacc taaaatgagc
    15181 atgttaaaat caaaggcctt tttgacggca ttgataattt ctccaccgtt attaatatct
    15241 aagtaaacat cacatttacg ataaactgtt tcgacagtat ccaattcaat cgcttggtat
    15301 aaatgcacat tcgcgtaacg ctcaaatgct gtcaacttag atgacatctc tgttaccgca
    15361 ccaatatgaa actgagcgaa tgggcaagat tgtacaatcg cttctagatt ttcaatttga
    15421 tccgagttag tcatagttaa aatgttcatg gtgtaattat tttctgattg atagttgtat
    15481 aaataaccac tgtgcgcaat aaattgacgt tcttcatctg tcaattgtgc atagatgttt
    15541 tcatattctt cacgctcagg tattaaaatt cgacaatgac gtggtgtgtc tttttcaaga
    15601 atcacacgca tattaccagg aatttcgcca taagatgttt cctgccagaa taaaatatca
    15661 tttcctggta tatctaattg atacagtatc aaaaatggtg tactcagcga attgataaca
    15721 atgttttcca aattaacatc aattgccttt aggaaaaacg tataaaaatc gatactatcg
    15781 ctaaaatgat actgctcacc tttccacgtt aaaattacac ttgaagcgac aaaattttca
    15841 taaatcactt cgttgccttg ttgatccaaa tagcggcgaa aaatcatatt tcctgtcaaa
    15901 tcgtatactg tttgtgcata acgaaaacca tgttgattgt aatgatcaac atactgaagt
    15961 tggccttttc gattgagcca ttccacatga ctgacaaggc gacgtttctc tgacggatga
    16021 aaatatatca tcgcccgtcg atcactcata tctttaaccc acgcttcatc attgttccct
    16081 tcaatctccc aaaagcgtgg cacaggaact tcgttaaaat atcgtgcgcg ctgtttgtca
    16141 gggacttgat aatttgcaaa gaattgatac ggtgaacgaa tgccctctgg taaaaatcca
    16201 tcatcaacta aaacaattgt ctcatcatgg tgacccgata tccttaacgt ttcgtatagt
    16261 tcacgtgtat cactgttaaa atactcaaat aaattaacca tgtaacacct cttctattaa
    16321 ttctttccat ttttgtcgcg tattctctat taaatatggc gtcgcaatcg catacgatgt
    16381 ttcatgaggg tcaacaggtc catcattgaa aaagcgaatg attgcttgag ctaaactgtc
    16441 aattattttt tcattactat cttctttaac ttctataggc acaagataac cattttttcc
    16501 atctctaata aaggttggat tgccataatt cacatcaaag ccaatcatcc ctaaacctga
    16561 accgactgct tccataaggg taaggccaaa cccctcactt gttgaagccg caacaaacaa
    16621 tggataattc ttataaatat catctagttt ctgatgtccc agcaaccgga tataatcgtg
    16681 tgcgcccagt ttttcaatcc agttttcaat ggactcacgt tccccgcctt caccataaat
    16741 atcaaaagtg agttcaggta cctctttctt cgcaatactc gcagcacgaa ccagccaatc
    16801 aatatgcttt tcacttgcta atcttgaagc agtcaccatg cgatatgcat gtcgcggtga
    16861 cgctggcttg ttaagttgat ttaaactccc tactggtact gtataaatcg gtggctcagc
    16921 gttgagatat tgcttgaatt gttgtgacaa tatctctttt tgacgttctg tagcagtaat
    16981 atagaaatca atctctttta catttgtaaa ttgatattca taataattgt tccacaaaat
    17041 gtgatcctcg tccgtcgcat tttcactgaa gtgttccgca tgcactacaa cgcctacttt
    17101 actatcccct ttattttgga gcatcgcttg tcctacttta gttgcacgat cataaatgac
    17161 aatatcttca gatgttagct ttaagttttg aataaagtat gcgacaaatt cctcttttgt
    17221 ataaaatagt tgatctttaa acgcataaac atgagtaccc tcatcaatat actctgtgta
    17281 aacaaccgaa ccatcttcat tataataatg tctcatgtat aacttagctt tttggtcagc
    17341 cggagcataa tactctgaaa aagttcgtgt gtagctataa taatcttttc gtaccaattt
    17401 gttattaatc acaaattctg cgcaatccac ataaggttca tcttcattct ttaaataaca
    17461 tgtaataaag ctgcccggtt gttctaaata taaccatcgc acagaaccgt ctacttcttc
    17521 acgaaccact tcttcatgga tagaagactt tatatcgtca attgtatatg tggtgggtgc
    17581 aattttaatg tctgtaaaat attgatatag ccatatcact tcatcatctt gaaaacccaa
    17641 attggatgtt aaagtttgta tgttttctga actcataaaa tctaaaaata caaatttcaa
    17701 aggaacatca agcccgcgta acgcttcagc gcgatacttt tgcgcatatt ctactccact
    17761 acttgcccat ccaataccga aattaatatt ataaattgtc atgctctcat cacctctcta
    17821 atttggaaaa tgcacgatta aatgtcgatc atcttctttt tccgttatac tttgacaaag
    17881 gtactttaca atgtcttttt taatagcatc tgtcatcagt tcaaatgatt ctaatgcgac
    17941 tttgtgatac tcgaaaatgg gattacgctt accattttgt ctggtgttca cactattctt
    18001 taacctttgt aaatggtcaa cttgtttaat ccaattactg tctatcgctt ttaatatcgc
    18061 tttttgcaca aagtacgtgt aaaaatagtc atctagatgc tgtctttgat atgctaattg
    18121 ctgtttaaat aatttgagaa gatattgagt taccgcgtta atatctctca gatctacacc
    18181 ttctagttgt cccttatatt gaaaacttaa atttttataa atatagtcca cccattcaga
    18241 aacagtgaaa tgtgtgtgtt caaatgcttc ttcaaaaact tctaacgcaa gttgctctaa
    18301 ctggatctct tccaagcttt taaattgcaa cacacgatta cgctctttat aaaccagttc
    18361 tctttggaca ctaatacttt tttcatgttc attcgaagtt tctcttactt tgatgccctg
    18421 ttcttcagaa agtcgctgag cacgtttgac aatttttctt acatgctttt ggaaaagacg
    18481 actgttttgt aacgtatggg tatcgaattt ttctagtcgc tttatccgtg atatctgatg
    18541 atccgaccac cttttgacga ggtagtcttc taaagaaata taaatttgtg ttgtccctgg
    18601 atcaccttgt cgtcctgaac gtccccgtaa ctgacggtca atacgactat tctccatatg
    18661 ttcactgata atgactgcca acccgcctag ctcaggaaca ccttcagcta atttgatatc
    18721 cgttccacga cctgccatac ttgttgctac cgttacagca cgcaactgtc ccgcttcagc
    18781 aatcatttgc gcttctttcg caacgttttg tgcaatgagt agattattag gaatatcgag
    18841 tgcaaacaat gctgctgaaa aatactcagc actttctgca gtacgggtaa tcagtagtac
    18901 agggcgttgc tctgtataaa gcgttttcac ccgttcaata atcgcttggt gtttatcttc
    18961 aatattttta aatacgcgat caggatagtc aatgcgttgt atcgggcgat gagtcggaat
    19021 ttgaatgaca acttttgaat ataaatctaa aaactctttt tcaccaaggt gacttgtggc
    19081 tgacattccc gcaaacacat taaattgctt gaacaagttt tgaaaagtaa tcgtagccat
    19141 gacactcata tccatagaca tttctacatt ttctttcgct tcaatagctt gatgtaaacc
    19201 tgattgtaat ttagtgccgt gcatcattcg cccgttaatt cgatctatca gtacgacttc
    19261 tccttgataa acaaaatagt ccatattatt ttcgaataaa aactgtgcac gtaaacatag
    19321 attaatgtta cgaactaagt caaaataagg cgcatcataa atattgtcca cgccaaaata
    19381 agcgtttgct gcttcaatgc catcagctgt taaccaaatc tctttttttg tttttttcat
    19441 cttaaaatga cgtttgtttt cgagtgtttg aacaaatgta ttgactacct gaaacaagtt
    19501 agattgcaca cgtggtgcac ctgaaatgac gagcggggtt tgagcggagt ctaaaataat
    19561 tgaatccacc tcatcaatga tgccatagtt caatgtaggc aagaacttac cttcacgaga
    19621 ttctgctaaa ttatcgatta aataatcaaa ccccaaacgc cctcctgttg tataaataat
    19681 gtcatgttga taaatggctt gtttttcacc tttctcatat tcataatcag gaatatccac
    19741 aaaccctaaa gcaatactaa gtcccaacca ttcgaaaagg ggcttcatct ccatgtaatc
    19801 cctttttgct aaataatcat ttgtcgtgat taaatacgcc cctttaccag taagtgcatt
    19861 taaatataat ggcatcgtcg cagtcaatgt tttaccttca ccggtttgca tctctgcaat
    19921 atttccttca tgtaatacaa ttgccccaag cacttgaaca tctttaggaa acatacctaa
    19981 gacacgtcga ctcgcttcac gtacaagtgc ataagcttca ggtaaaatgg cttcaagtgt
    20041 cgtctctttt tgtaataatt gacgcttaaa agttactgtt ttttgttgca acacatcatc
    20101 tggtagcgtt tgaaatgatt tttcatattg ctgaatatgt tttaaaatac gctttaaacg
    20161 tctcaaccgc atcttgttaa ttgttttatg cagtgactga ctcattcaat ctgacctcca
    20221 ttcaaccttt gtacattgag tcctcgtaat tgatgactct tattcaatac agcatctaac
    20281 cactgacacg actgagtaac cgtttcattg ccctgataga tgactattgt gctgtctttt
    20341 gcatcatgga tatttggcgc gttttcttga gcattatctg tatcagaagt cacaaaaatc
    20401 gttgctttga gatggctacc aatcagtttc gccatcttat ttgaacgttt atcataacca
    20461 actaactgac agcgatagcc ctttgttttt tctttgatca tttcaactaa atgcgtgatt
    20521 tcatatgttg atgctttaac atcccaccct gtcacaagca tacaattttg gatccccttg
    20581 attaattcag agtccaaacc ttcttttggt gcaaaaatca atgtagtcct agccacattg
    20641 acatttggat tttgcatact gctgattcta accccatctt ttcgatgtat ttcaagccga
    20701 gcttctttaa tagtaatttg acggaacaac aattgtgttg atgcagcatt tatcatttgt
    20761 atgacatatg aaaacgtatc ttcagggacc gtcacatctg cctcatgtgt tttaataatt
    20821 tgaaagccac atgtggtgcc attacgtctt ttaaaaatca ctttgaaata gatactattc
    20881 tcaggttgta catcgtaatc aaaataaaaa tggtaggtac aattcttttt taggataggt
    20941 aagtctggaa cattcacgtc tgtttgaaag tctgtcatca ttttccattc atgaatgaca
    21001 atcccagaag gcattaaagc attttcaaat aatacacctg tcgaggacca tttcaatttt
    21061 gtaccgtaca taaatgtgtc tttcgtgaca tgagtccacc gaatattaaa tggatgttta
    21121 tcgctcatct ctcactctcc caaactgact ttccataatc ataaaataaa agtgactgaa
    21181 ccaactcgta atcgtagggg tatcatcatt atgacgccct ggcgtacttc gactcatcac
    21241 tcgcgcacct tgacgagata aagctgacaa aagattttgg aatgcataca aatcgtaatc
    21301 atcatgttcc atataagaaa tcgcaaagag tgtctggtcg atttgatttt gattcagtgt
    21361 ggtccaaaat ttttgattca gtcgttcaat ggcttcatca tctaagcctc tttcatttgt
    21421 caacaaaata tcaagcgcgg taccgaaatc ttctggtcgc attaacctca tattttcagc
    21481 tatccctcct atattgacga ggggttttcc cactacaatg gcggctggat tgagttgtgc
    21541 accataatag agtgcaccaa aagaacccat tgagagtcca gacatgatca tttcatcttc
    21601 tttaaaacct aaccactcta atgtgtcttg gatgaccttt ttaatttgat tctcaaaggc
    21661 atcgtttcct aaataaaatc caccaccctc caatctcaaa tcactaatca gtaaaaatgg
    21721 cgccttaaat ttctccatca tatagtaacc ttcaaaccct tcagcagtac ggtaaccact
    21781 aaagtaaaca tttaatggcg gctttaaatc acctggatgg aaaaaatgga tgaattctcc
    21841 tctatcttca ctactccacc tttgtccacc taagataaac tgcccatgtt ccatacgaga
    21901 ccatctcttg tgaatattac ctactttgag cgtaccttcc ccttttgctt ttgcagtcac
    21961 aaagatatag gcatctttgt ccatgctcgg gatggcaaaa ggctctatca aacgctcgcc
    22021 ttccaacaca aattcgcgaa ttaagttgtc catattaaga ttttcatata agcgtaatgt
    22081 ataagacact tcgacatggg gtgatgatgt gtactcgagc catatttcat tgactttgta
    22141 tctgtcgtaa taaagataca tgttccaact cagaatcggc gtgtacgtct caccaaaatt
    22201 tccttttagc acaagttgat gtcttccctc ataatacgtc tctcctttaa aaagtgggtt
    22261 gactttacaa tgaatagggt gaatccgatc cccatattgt ttactaaaag caagtgccat
    22321 taatcgtttg atacaatctt cttctgaatc ataagaaaaa caacgaataa agcgtgtacg
    22381 aacaacctct tctgcttcaa aaaaactatt ccaaaatcgt tggtcgacat aagtgttgta
    22441 gggttgactg actaatctga atgcttgcat taacatctct gaataaggga cctgaacaaa
    22501 aacaaaatca aattgttttt cttcttctac taactttttt aattcttcca aatctgataa
    22561 tgaatcaagt ggcatagagg tccaactcac ttcatctctg tctttaaaat gtgaagcata
    22621 attctcccca ccaatttgta gcattttata acgttgcttc atgtgtttca ccttctaacc
    22681 aatcgtccaa cattttcaaa atttcattcg attcatatgc cttagcaagc ttcattgcgt
    22741 acgcataggc gtgattccaa tgttttaagt agtctaaaaa ataagcaatc ccctcagtta
    22801 agtcagcatc atttgaaatc acatagccat tcctaccgtg tttgacataa tctgtttcca
    22861 tacgggagat ttgtggtaat cctgcaccaa gacaacaaat ctgtaaaaat aaatccggct
    22921 cttcattcaa atctatgact agtcttaatg tcgaaacagc ctcagcaaca tcgatctcaa
    22981 atggtacaga tttcaatgaa gcataaacga tactgtcacg ctttcctttt tgcggaaatt
    23041 cttgcaacac ctttgattca gtctgccgct ctttaaaaaa gttttgtatt cgattcactt
    23101 ctgcttgtat ccattcaggg acctgatatt cttctcgtcg tgtaagaaaa accacacgtg
    23161 tttgaggacg acattccagt tcattgatga ggtaattcac aattgttacc aatcttcctt
    23221 ggtctatacc atcaatccat actcctatta gactttcatg taattggttg ctgacattcg
    23281 gagtgatacg tacatcaaaa ggtgtaatac gaagcctttt ctgggtctcc gaggataaaa
    23341 taccgcaatc cgctatacgt cgctcatttt ccattgtgtc tattaaacaa tatggacctt
    23401 ctttgataga cgccatacct tcatcagata gtgcattttc tctttgttgg tagactgaaa
    23461 agcatagtcg ttgcgttgaa aaatgacgtg aaatgattgg gttatgtcgg acatctgatg
    23521 ctgtaataat gacatcttta ctgcttattt tggttttgta atggtttata tattcatcaa
    23581 taagcgctgg catattgtcg taataggcat atttaaaacg atgagcataa tccggatgaa
    23641 tagtaacacc acctaataac aagtcttctt tcataatcca gtcgccattc gctgtcatgt
    23701 agtaatgctc cgcgaattga ccatgagcat cacatgataa aaagcttgaa agaaagccac
    23761 gatcgtcaaa gatacaacga tttttttgaa cacccttttc aaaagtttca atccacaaaa
    23821 gatacccttc ttggctgaat tggatttctg aatacatatg tggccctgta agtgctctaa
    23881 ttaaaaatag tgaatgtaca aattctgtac cattcggcca attaaattga cgataatcta
    23941 taggacgcgg tgtttgatgc gtaaatcctt gaatttcatc aaataatgac cagtatgtcg
    24001 cttcaaatag ttcctgccga tgtaaaaaca agcgtaaatt tggtgaataa ttaagcacca
    24061 tcatttcaaa tggagcttta ttttttaaat gaatgttcat cagactaatt aattcatcaa
    24121 actcattcac ttttaacgtt ctatgaaaag gaagggcttg actcctccac caatcatcag
    24181 ttgtgtacca agcaggtata aaatgtttca taaaatgctc cttaccaata ttgatttaag
    24241 aaggcaccgt atttatcgaa atataaatag gtcctcatcg tttcagtaat attcattgcc
    24301 aaatacacca taatcatcag ttgcacagca aaataaatat attctgacaa gtctggaacc
    24361 agcaatgaaa tgtacaaagg cacgccaata atagctgtaa caatggtagt tccgaaccaa
    24421 caaagacgct tagctaaatg atttaaataa tttcctgtat ctgcacccgg cctaattcca
    24481 ataaagtaat taccattttt taaaaagtcc ttggtatttt gtttggtgtt tacgattaag
    24541 cgtgataaca aataacctaa gacggtttga agaataaggt aaatcgtaac acccatataa
    24601 tgcccaaaag acaaccattg taaatgaggt gttttcccag taaccatatt aaaaataaga
    24661 ttaatcgtac tcgttaaaag caaaaataca gataaactaa tcatgattga aatacttcca
    24721 ccagggttga ttttccatgc taaataagtc ggttgccctg gagttggcat ttcaataatg
    24781 tctcgatagt gaatgcgata ctcaatcaat tcagtcaaaa gtaatataaa taatgcgaca
    24841 attattaata tcaccattac tactagcatc aaaatctcaa tagatacaat tggcaaactt
    24901 tgcgtaaaca ttgatttaat cacgctcaac aacacaatag gcatcggccc cgcaattcca
    24961 tagcgcatat tctgatctgc aagccacatc attaacatgg cacctgtaac gaggataagt
    25021 agaagtaata actcagtgaa tctctcagca tctgtatgtc gaacgaattg attaataaca
    25081 aaataacctt gtatgatgct taagcctagc gttaaaaact tttctttata atgtttttct
    25141 gctcgtgttt gatgcatggc tttttccata tttttataag ttatcaaact gatgataatc
    25201 atagctgtca accacggtcc taatcccaat gaaaatacat ttaattgatg tatatctcca
    25261 cccatattag aaacagctaa cttgtaaaaa gcgctatcgt gttgacgcat ggcgttttca
    25321 tcaacaatgg ttattttact gcctaatatg tatatcaata atataagtat tgtgaatgct
    25381 attcttttgt aaaaaatctt gtattcatat tgatttataa tttttgtgat tctgttattt
    25441 ttcactttaa ccctcttttt tcaaacatgg tgtcaaagag gctaactatc tctttgacaa
    25501 atcatgttat ataaacatga agctagcctc tttaaccatg cttaaactat ttattattca
    25561 tgtgatgatg tttcttcatc tttttgtttt cttgattttt tgagtaaacc aaggcctgta
    25621 agtaaagcac ctactccacc caataaacca gtttgtgtcg ttgattgacc tgtgtcaggt
    25681 aatttttcaa ctttatttgt agcgtgctgt tcatctttag aaactacttt ttgaactgtc
    25741 gctgaatcgc ttgatgacga acttgaagta atttctgatg gcgttgatgc cgatgttgaa
    25801 agagaactac tcatagaaga gcttaccgag ttaggttcac ttgttgatgc acttactgaa
    25861 atagagtcac tcactgacac actgtttgac actgatacgc tcattgaagc acttgttgat
    25921 gcgctcactg acattgatac actgatcgat gctgactcgc ttgcttctgt acttacagct
    25981 tcgcttgttg atgtcgacgc tgacgtactt gctgacgttg acgcacttgc tgatgtactc
    26041 attgatccgt gtactgactt cacaactgat tcaaattctg atggcgtacc attgttcgac
    26101 gctttgtctt tcaatgaatc tactgtggat acgaatgtgc ttgcaccttc tcttgttgtg
    26161 ctaccgttcg atgcttcact gcttaatgag ttcactgctg atacaaactc gcttgcttct
    26221 gtacttacag cttcacttgt cgatgtcgat gccgacgtac tttctgatgc tgacacactt
    26281 gctgatgtac tcattgatcc gtgtactgac ttcacaactg attcaaattc tgatgctgta
    26341 ccattgtttg atgctttgtc tttcaatgaa tctactgtgg atacaaatgt gcttgcacct
    26401 tctcttgttg tgctgccgtt cgatgcttca ctgcttaatg agttcactgc tgatacaaac
    26461 tcgcttgctt ctgtacttac agcttcactt gttgatgtcg acgctgacgt acttgctgac
    26521 gttgacgcac ttgctgatgt actcattgat ccgtgtactg acttcacaac tgattcaaat
    26581 tctgatggcg taccattatt cgatgctttg tctttcaacg aatctactgt ggatacgaat
    26641 gtgcttgcac cttctcttgt tgtgctaccg ttcgatgctt cactgcttaa tgagttcact
    26701 gctgatacaa actcacttgc ttctgtactt acagcttcac ttgtcgatgt cgatgccgac
    26761 gtactttctg atgctgacac acttgctgat gtactcattg atccgtgtac tgacttcaca
    26821 actgacgcga actctgatgg tgtaccatta ttcgatgctt tacctttcaa cgaatctact
    26881 gtggatacaa acgtgcttgc accttctctt gttgtgctgc cattcgatgc ttcactgctt
    26941 aatgagctca ctgctgatac aaattcactt gcttctgtac ttacagcttc gcttgttgat
    27001 gtcgacgctg acgtacttgc cgacgttgac gcacttgctg atacactcat tgatccgtgt
    27061 actgacttca caactgacgc gaactctgat ggtgtatcat tgttcgacgc tttatctttc
    27121 aatgaatcta ctgtggatac aaatgtgctt gcaccttctc ttgttgtgct accgttcgat
    27181 gcttcactgc ttaatgagtt cactgctgat acaaactcac ttgcttctgt acttacagct
    27241 tcacttgttg atgtcgacgc tgacgtactt gccgacgttg acgcacttgc tgatgtactc
    27301 attgatccgt gtactgactt cacaactgat tcaaattctg atggcgtacc attattcgat
    27361 gctttgtctt tcaacgaatc tactgtggat acaaatgtac ttgcatcttc tcttgttgtg
    27421 cttccgttag aagttacttg actcaacgag tctactgctg atacaaattc gcttgcttct
    27481 gtacttacag cttcacttgt cgatgttgat gctgacgctg acgtacttgc tgatacactc
    27541 attgatccgt gtactgattt cacaactgat tcaaattctg atgctgtatc attgttcgat
    27601 gctttatctt tcaatgaatc tactgtggat acgaatgtgc ttgcaccttc tcttgttgtg
    27661 ctgccgttcg atgcttcact gcttaatgag ttcactgctg atacaaactc gcttgcttct
    27721 gtgcttacag cttcacttgt tgatgtcgat gctgatgttg acgcacttgc tgatacactc
    27781 attgatccgt gtactgactt cacaactgat tcaaattctg atgctgtacc attgtttgat
    27841 gctttatctt tcagtgaatc taccgttgat acaaacgtgc ttgcaccttc tcttgttgtg
    27901 ctgccattcg atgcttcact gcttaatgag ctcactgctg atacaaattc
//
LOCUS       DANHOL010000014        27399 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.014, whole genome shotgun sequence.
ACCESSION   DANHOL010000014 DANHOL010000000
VERSION     DANHOL010000014.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 27399)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27399)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27399
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.014"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(84..1343)
                     /locus_tag="PTC08_000405"
     CDS             complement(84..1343)
                     /locus_tag="PTC08_000405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyltransferase"
                     /protein_id="HDK5681938.1"
                     /translation="MKFTELTVEEYDQFVQNPALESHYFQVKENIATREADDFQVVLL
                     GVKDDNNQVLAASLFSKIPTAGSYVYYSNRGPVMDYSDLGLADFYLKELDQYLNRNKC
                     LYVKMDPYWIYQVYDKDIHPMGDKMPNDKLVQLFKSHGYRHHGFTTSYDTSSQVRWMG
                     VLDLKGHTPQTLKKQFDSQRKRNINKATNFGVKVRFLEVDEFDQFLELYRETEERAGF
                     VSKTDEYFKNFINTYGHKALVPLAYIDLDEYITSLQESLNDKETRRDQMMANENKSDK
                     QIKKIAELDKQIDHDQQEMLKASELRKTDGSVLNLAAGVYFANAYEINYFSGGSSEKY
                     NHFMGPYAMHWFMINYCFDHGYERYNFYGVSGDFTENSEDYGVYRFKRGFGVQIEELV
                     GDFYKPIHKVKYFVFDVLNRLRSKIKR"
     gene            complement(1373..2638)
                     /locus_tag="PTC08_000406"
     CDS             complement(1373..2638)
                     /locus_tag="PTC08_000406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyltransferase"
                     /protein_id="HDK5681939.1"
                     /translation="MKFTNLTTAEFGAFTDSMPYSHFTQMVGNYELKVAEGVETHLVG
                     IKDNHNQVLAACLLTAVPVMKVFKYFYTNRGPVMDYENQELVHFFFNELAKYVKKYNA
                     LYVRVDPYLPMLKRNHDGEVIERFQNDWFFDKMTQLGFEHEGFTTGFDTVRQIRFHSV
                     LDVEGKTAKDILNNMDSLRKRNTKKVQKNGVKVRFLDENELHIFRSFMEETSETKDFV
                     DREDDFYYHRLKHYKDRVLVPLAYIDFTTYIPELKSEEQDFHKQIAKTEKELEKRPDN
                     QKSLNKKNNLMQQLEANQAKIQEAEQLQAKHGDTLPISAGFFIINPFEVVYYAGGTAN
                     EFRHFAGSYAIQWEMINYAIEHHIPRYNFYGISGHFTEDAEDAGVVKFKKGYNADVIE
                     YVGDFIKPVRKPVYKIYTTLKQLKEKIKR"
     gene            complement(2813..3847)
                     /locus_tag="PTC08_000407"
     CDS             complement(2813..3847)
                     /locus_tag="PTC08_000407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M42 family metallopeptidase"
                     /protein_id="HDK5681940.1"
                     /translation="MNESVIETLTALTTINSPSGNADRAIAYVQQTVEAYGYNTQLTR
                     KGGLLIEVKGDDDTEKKCITAHVDTLGAMVKEILDNGRLRLALIGGFRYNAIEGEYCT
                     IETTTGQTYRGTILLHETSPHVYANNHEIPRNQEHIEVRIDEKVTSADETRELGIDVG
                     DFVSFDPRTEVTASGFIKSRHLDDKVSVAIIIEFLKQYRHREDRLPHTIQFYISNNEE
                     IGYGANSNIDPKVVEFIAFDMGALGDGQASDEYTVSICAQDASGPYHKQLRHHLVSLC
                     QKHNIPYKVDLYPFYASDASAALKAGADVKHGLFGAGIESSHAMERTHLDSIKAAQAL
                     LEAYCFSKLL"
     gene            3990..5081
                     /locus_tag="PTC08_000408"
     CDS             3990..5081
                     /locus_tag="PTC08_000408"
                     /EC_number="1.3.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016425028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydrogenase"
                     /protein_id="HDK5681941.1"
                     /translation="MTHVFFVGLGLIGGSLASNIQYFHPDITISAYDAHYEQLERAVS
                     IGIIDQASADYESTLQEADIVIFATPVQTTVQYLSQLPQMKTKSGLIVTDTGSTKSTI
                     QAFEKELLSADIHLIGGHPMAGSHKSGVLNAKKHLFENAYYILVHQLTENQEAAQRIE
                     HLLAPTRARFIHLTADEHDQITGVVSHVPHLIASSLVHLNAFYAADVPLIQDLAAGGF
                     RDITRVASSNPEMWRDISIENKAHIVSSLKQLQQQLTETVDMLEQGHEEALYQFFDQA
                     KTYRDGLPIRGKGAMQSTYDLYVDIPDKPGMISKVTEILSQHQISIRNLRILEVREDI
                     YGALRISFKKAEDRDAAMTALSDFDTYLS"
     gene            complement(5157..6419)
                     /locus_tag="PTC08_000409"
     CDS             complement(5157..6419)
                     /locus_tag="PTC08_000409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017636417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Y-family DNA polymerase"
                     /protein_id="HDK5681942.1"
                     /translation="MYDYHLLEDRDILCIDQKSFFASVSCIEKGLDPLTTKLAVVADT
                     KRQGSVVLAATPSLKAMGIQTGSRLFEIPHHNDIYIINPSMRRYLEVSLKISEIALRY
                     VPPEDLHQYSIDEFFMDVTKSYYHFNTTLHTFCERLIKEIYDETKVHCAIGIGSNMLL
                     SKLALDHEAKKHPDDIAEWRYQDVPDKVWEITPLSSFWGIGKKTEKKLNQRGIFKIGQ
                     LAHYPYEYLKRDFGILGVDWHLHAHGIDQSRMNEAYQIINPSICKSQILLRDYTYREA
                     HVVMQELIEDVAQRLRARQQIARTIHFSMGYKEGGHVTKQYTLHTGTNLDQDIYKEVK
                     RLADMHCDQGALYRTLSVSLTQLMNENERNLDLFTDEFQRLRQEKLAKTIDALQTKYG
                     KGVVSKAISLTEAGTKYGRLGLMAGHQM"
     gene            complement(6572..6979)
                     /locus_tag="PTC08_000410"
     CDS             complement(6572..6979)
                     /locus_tag="PTC08_000410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sporulation protein"
                     /protein_id="HDK5681943.1"
                     /translation="MGFDNVLTSLGINGMKVFIRLEQQTFDVSDAIAGTIHLKAGQSD
                     QKVNHIVLTMIEKYENDDETSDFTTISHELNRFEIDEAFIIDVGEEKEIPFHFHPDTL
                     NFKSDKSHVYLNTHVYIDYGVDEETEAVIPYHR"
     gene            7091..7276
                     /locus_tag="PTC08_000411"
     CDS             7091..7276
                     /locus_tag="PTC08_000411"
                     /EC_number="5.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-oxalocrotonate tautomerase"
                     /protein_id="HDK5681944.1"
                     /translation="MPIVTVQLLEGRSDEQLKNLVKEVTNAVESTTNADRSAISVVIQ
                     EMKKEHYGVAGVRKSDQ"
     gene            complement(7332..8303)
                     /locus_tag="PTC08_000412"
     CDS             complement(7332..8303)
                     /locus_tag="PTC08_000412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LCP family protein"
                     /protein_id="HDK5681945.1"
                     /translation="MKENNLNRSTSNSSEKTLKRRKKRKIRKLPFVILALILIILVSV
                     VYAVSSYKNGLEVAKDKHQAPKIHKFNGASKNDGKATVLILGADREDGGVSRTDSIMV
                     AQYDYIKKDMKIVSVMRDIYADIPGYNSYKINAAYSLGGPELLRQTLKSNLGIDPEYY
                     ATLDFKGFEAMIDELAPKGIPINVEKDMSEKIGVSLKKGNHRLNGKELLGYARFRNDP
                     EGDFGRVRRQQQVMTALKQQLVQPSSIFKAPKLAGIMRGYVSTDMPDSTIYQTGFSFI
                     VRGDKDIKTLSVPVKGSYENITTNDGGSALGIDKAENKKRIKAFLED"
     gene            8442..8960
                     /gene="msrA"
                     /locus_tag="PTC08_000413"
     CDS             8442..8960
                     /gene="msrA"
                     /locus_tag="PTC08_000413"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HDK5681946.1"
                     /translation="MNINTAYFAGGCFWCMTQPFDQNEGIEKVKSGYMGGHVDHPTYE
                     QVKSGDTGHYETVKIEYDVALFSYQKLLEIFFSVIDPTDDGGQFQDRGSQYRTAIFYT
                     NEDQRQVAEAYIASLEGTFNHDKAIATKVLPASEFYEAEAYHQDFYKKQPERFAQQEA
                     EREAYAKEHGIQ"
     gene            complement(9207..11726)
                     /gene="mprF"
                     /locus_tag="PTC08_000414"
     CDS             complement(9207..11726)
                     /gene="mprF"
                     /locus_tag="PTC08_000414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional lysylphosphatidylglycerol
                     flippase/synthetase MprF"
                     /protein_id="HDK5681947.1"
                     /translation="MTKQLWLKYFKIAFILFLIVTISIILGRELAHIDFKRVFLLFNE
                     ISRMETFSLFLLGGSSVILLSLYDVILTTRFKLSLSKFKALRVGYIINAFNNIIGFGG
                     FIGASVRLWFYGSYTTERKKLVKFVSYMLTSMLTGLSFLSILIVTHVLDVSFLDRTSV
                     WFTVFLYIVAFLLPVFIIISWVSPVDRSARWLGSVFTFVSSMEWLLASIVLYCSFMLV
                     GVNVSFPIVLSIFIVAAISGLLSFIPGGFGAFDLIVLLGLQQLGVAEEKVVLGLLLYR
                     FAYYFFPLLIALVLTVFEFGTAARKYMLESKYFLPAKELSGFLKSFQKDLVGLVPSLA
                     LSTLVFMMSLILLLNNFSIIFDAANKKPHLLFTLLYIFNVSASLILLLNLRGIVARSK
                     RAILFAIVAMIILLLSNLYVYGLSLLVVIIVLILAALIFAYRKSRVLKRPVRMKGILA
                     MVVISVILLYFNQIIVRDFLFALDVLPPKVDFFLLRSTFWLSIIGMTILVVVLIYIFE
                     WNYRRPRELHDRQIASAILKQYGGHLLSHLLYSEDKLVFVNEQKTAFIMYRHDRSSFI
                     VLGDPVGNSSDFYSLLTEFYEYATYLGGDVIFYQVSNNYLTLYHDFGNQFFKLGEEAL
                     IPVSDFTVAGKKRRGFRATLNKLESLGYQFEILDTPLDEATYERLHDISRNWLGKQQE
                     FYFSVGRFTPSYVNAAPVAVLKNEEGRIDAFCTLMPVEGSTTVSVDLIRWDKSLGLPF
                     MDALYLHMILWAQAEGYERFNMGMATLSNVGQVPYGHLREKFAGRFYEHFNGLYSFQG
                     LRQYKSKFNPDWESRFLIYHRGQNAWESLLKVTRVIRKKKI"
     gene            complement(11822..13024)
                     /locus_tag="PTC08_000415"
     CDS             complement(11822..13024)
                     /locus_tag="PTC08_000415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HDK5681948.1"
                     /translation="MSENQHKQNGVSKNIDIRESRFMKFFGGKDLIFALLVFILVGIV
                     IFIFDRVSYIFQPFIIIFNTIAAPIIIALILYYLFNPVINLMERYNINRIWGITILFL
                     GIIGMITIAVNLLIPIVSFQFDRLMDNFPNYLNKLTSFANNMMHIPFLSDYYSQIEKA
                     VTGLQEKIPTFADGLSSKIRVFAEAVVNITVVIITVPFVLFFMLKDGHRFKEFSNKIV
                     PPKFRKDVHDLLDKMSEQVGSYIQGQIIVSFCIGILLFIGYSIIGLDYALILASIAAV
                     TSVVPYLGPTIAISPAIIISIITSPFMLIKLIVVWTAVQFIEGHFISPNIMGKTLKIH
                     PLTIIFVLLSAGNLLGVVGVILGIPSYAILKVLVSHIFLLFKRRYNKYYADDAGPYEM
                     PKEEYSKD"
     gene            complement(13297..15336)
                     /locus_tag="PTC08_000416"
     CDS             complement(13297..15336)
                     /locus_tag="PTC08_000416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit IIABC"
                     /protein_id="HDK5681949.1"
                     /translation="MRKKLFGQLQRIGKALMLPVAILPAAGLLLAFGAALQGEQLQSY
                     LPFIQADGVQNVAEMMAAAGSIIFENLPIIFAMGVAIGLAGGDGVAAIAAFVGFIILN
                     KTMGEFLGVTPDNVGDAAKGYASVLGIPTLQTGVFGGIIIGALAAWCYNKFYNISLPS
                     YLGFFAGKRFVPIVMATTSFLLAFPMALVWPVIQNGLNAFSEGLLDSNTGLAVFLFGF
                     IKRLLIPFGLHHIFHAPFWFEFGSYTNMAGEIIRGDQRIFIEQIREGTNLTAGKFMQG
                     EFPVMMFGLPAAALAIYHTAKPENKKVVAGLMGSAALTSFLTGITEPLEFSFLFVAPL
                     LFFIHAILDGLSFLILYLLDLHLGYTFSGGFIDFVLLGILPNKTHWWLVIPVGLVYGV
                     IYYSIFRFLITKMNYKTPGREDKQTETTTTTASELPYAVLQAMGDKDNIKHLDACITR
                     LRVEVNDKSKVDVARLKDLGASGVLEVGNNMQAIFGPKSDQIKHEMQQIMSGQAVQHP
                     VDLDEDKDEAVVIDEAADTTAVTKTGQVVAPMDGEVVPLSEVPDQVFSEKMMGEGIAI
                     RPTSGEVYAPFDGKIQMIFPTKHAFGLVSDNGLELLIHVGLDTVKLNGEGFTVHVEEG
                     QTIKAGDHLMTVDLELIRASAKSDITPIIVTQSEVTALKFTEAKDVKHGDKLFEI"
     gene            complement(15447..16298)
                     /locus_tag="PTC08_000417"
     CDS             complement(15447..16298)
                     /locus_tag="PTC08_000417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PRD domain-containing protein"
                     /protein_id="HDK5681950.1"
                     /translation="MNQYTIKKVLNNNVLICEYQQSEVVIIGKGLGFNKKPGMKINDL
                     DTIEKVFKLENKNEQDHYKMLVAHTDERVLRAVIDSVQIIMTHFELHHEESFIVSLTD
                     HLIFALKRLEKGQLIKNPFLSETKYSYPEAYKIAKKVVARINLQLNTDFPEDEVGFIA
                     LHIASQTDDIDLSEMQYVPKLINNAIRMIEHDMKIQIPVASIQYQRFVRHIHFLLQRL
                     KKGERTTIELSFENLLKAQYPLCYNVAVKIVKMIQSQIDVRVDEAEVAYLTMHIQQLS
                     LASQNQS"
     gene            complement(16494..17957)
                     /locus_tag="PTC08_000418"
     CDS             complement(16494..17957)
                     /locus_tag="PTC08_000418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine:cation symporter family protein"
                     /protein_id="HDK5681951.1"
                     /translation="MRDFDSLIPDWFKAFIQIGNDLIWSQYLIGLLLTVGLFFSISSK
                     FVQIRWLPEMFRALTDKSETLESGKKGISSFQAFAISAGSRVGTGNIAGVATAIVLGG
                     PGAVFWMWIIAIIGAASAFIEATLAQVYKVPDKEGGFRGGPAYYITKGLNQRWLGVLF
                     AILITVTFAFVFNTVQSNTIAESLNTQYHISPLVTGIILAVITAIVIFGGVRSIATLS
                     SVIVPVMAIIYILIVLVILVMNIDQIFPMISTIIKSAFGIDQATGGAVGFAVLQGVKR
                     GLFSNEAGMGSAPNAAATAAVSHPVKQGLIQSLGVFFDTILVCTATAIMILLYSGLKF
                     GEGEAQGVAVTQSALNEHLGSAGGVFLSIAVALFAFSSVIGNYYYGQSNIEFLSTNKV
                     VLFIFRCFVVILVFVGAVVKTETVWNTADVFMGLMAIVNIIAIIGLSNIAFAVMRDYQ
                     RQRKEGKRPIFRPENLEINLFGIESWGNAIHKNKKED"
     gene            complement(18060..20471)
                     /gene="parC"
                     /locus_tag="PTC08_000419"
     CDS             complement(18060..20471)
                     /gene="parC"
                     /locus_tag="PTC08_000419"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit A"
                     /protein_id="HDK5681952.1"
                     /translation="MAEIIQNLPLVDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRR
                     ILYSMYSNGNTYDKHFRKSAKTVGDVIGQLHPHGDISVYDAMVRLSQDWKLRHVLVEM
                     HGNNGSIDNDPPAAMRYTEAKLSQLSEQILRDINKDTVDFVPNYDDTEMEPMVLPARF
                     PNLLVNGSTGISAGYATDIPPHNLAEVITATLKYIDNPDLTVKQLMKYIKGPDFPTGG
                     IVQGIDGIKKAYETGKGKVVVRAKADIETLRNGRSQIIVTEIPYEVNKSSLVKKIDEL
                     RADKKVEGIVEVRDETDRSGLRVAVELKKDVNATSILNFLYKNTDLQVAYNFNMVAIT
                     EGRPKLMGIKPIISSYLNHQIEVVTRRTSFDLKHTEERMHIVEGLMKALSILDEVIAL
                     IRNSKNKRDAKENLVKTYDFTEAQAEAIVMLQLYRLTNTDIVALQEEYDALKQKIAAL
                     KHILENHDALLDVIKEELSEIKKQFKQPRLSVIEEKISEIKIDKEVIVPSETVMLSLT
                     QEGYIKRTSLRSFNASGKEEIGLKERDGVLKIIETNTQDYAMVFTNKGRYLLIPVHKL
                     PDVKWKDLGQHVSQIVPIEEDERVVDCYTVSEFNDERAIITATRLGMIKKSLLSGFKS
                     TRTTKPLVAMKVKESDALISVMLVPADASSQLITLLTHRGMSLTYPMSELPDTGLRAT
                     GIKAINLKDEDHVVLADHIQTEDTILIATQRGALKRIGFKVLQQAKRAQRGITLLKEL
                     KKQPHRVVAARVCRPEQSQYRLVSQQDETTGLIKDIHLSEQYTNGSFVVDTSTFGEIE
                     DLYVD"
     gene            complement(20471..22468)
                     /gene="parE"
                     /locus_tag="PTC08_000420"
     CDS             complement(20471..22468)
                     /gene="parE"
                     /locus_tag="PTC08_000420"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit B"
                     /protein_id="HDK5681953.1"
                     /translation="MSAKKVNNYSDDAIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVY
                     EVVDNSVDEILNGYGNEINVTINEDESITVADNGRGMPTGTHRSGKPTVEVIFTVLHA
                     GGKFGQGGYKTSGGLHGVGASVVNALSESLSVEIHRDGEIFEQQFAHGGVPQTKLIKK
                     GKTKKTGTTVTFKPDAEIFQSATSFNFETLSERLQESAFLLQNLKITLEDRRVGKERS
                     EVYHYEEGIKAFVSYVNEGKEVLHDVALFQGTANEIEVDVSFQYNDQYSESIMSFVNN
                     VRTKDGGTHEVGFKTAMTRVFNEYARRIGDLKAKDKNLEGNDIREGLTAIISVRIPEH
                     LLQFEGQTKSKLGTPEARSAVDAIVAEKLPFYLEEKGQLSKSLVKKAIKAQQAREAAR
                     KAREDARSGKKNKRKDTLLSGKLTPAQSKNTEKNELYLVEGDSAGGSAKLGRDRKFQA
                     ILPLRGKVINTEKARLEDIFKNEEINTIIHTIGAGVGNDFNLKDSNYNRIIIMTDADT
                     DGAHIQVLLLTFFFKYMRPLVMAGRVYIALPPLYKLEKGKGKNKKIAYAWTDEELEKL
                     QREMGKGFVLQRYKGLGEMNPDQLWETTMNPETRTLIRVQIDDEVRSSQRVSTLMGDK
                     VAPRREWIERHVQFGMQEDLSILENEEIQILSDDDIAEEDA"
     gene            22759..23340
                     /gene="plsY"
                     /locus_tag="PTC08_000421"
     CDS             22759..23340
                     /gene="plsY"
                     /locus_tag="PTC08_000421"
                     /EC_number="2.3.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsY"
                     /protein_id="HDK5681954.1"
                     /translation="MVLILLFIVSYLIGSIPSGYLIGKIFFKKDIRKYGSGNMGATNS
                     FRVLGKPAGFAVTFFDIFKGFIVVFLPVLFNVEIHGLLVGIFAILGHVYPIYLKFRGG
                     KAVATSAGVMLAVNPILLLILAAIFFAILKLTKYVSLSSIIAAICCVIGSFFVSDYIM
                     LITSFVVAILLIYRHMSNIKRIIKGTEPKIKWM"
     gene            23423..23728
                     /locus_tag="PTC08_000422"
     CDS             23423..23728
                     /locus_tag="PTC08_000422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5681955.1"
                     /translation="MKIELTDDAVEWFKDELELPEEGKVLQFYVRYGGEFQLKQGFSP
                     AFNVEFESDIDEIGFEETFNDIRIVIAEKDVWYYEDHKLSIDINDDEVIYTAESIEA"
     gene            complement(23857..24321)
                     /locus_tag="PTC08_000423"
     CDS             complement(23857..24321)
                     /locus_tag="PTC08_000423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HDK5681956.1"
                     /translation="MIYALTEIEARYQETDQMGVIYHGNYATWFEVARTDYIRKLGLD
                     YAEMEQAGVVSPVTELNIQYKKSVTYPEKVIIKTWVSRFSRLRSRYQYEIYNAKGELV
                     TTGYTDNVIITKDAGKPVRLDKAFPSWYTVYHDVDQRNQAGEDLEVKSSDID"
     gene            complement(24686..27391)
                     /gene="acnA"
                     /locus_tag="PTC08_000424"
     CDS             complement(24686..27391)
                     /gene="acnA"
                     /locus_tag="PTC08_000424"
                     /EC_number="4.2.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aconitate hydratase AcnA"
                     /protein_id="HDK5681957.1"
                     /translation="MASNLKAQAKKSFQLNGKSLTYYDLNTLEEQGYTQISRLPYSIR
                     VLLESVLRQEDGFVITDEHIKALSSFGKENEKGEVPFKPSRVILQDFTGVPAVVDLAS
                     LRKAMDDVGGDLTKINPEVPVDLVIDHSVQVDSYANPESLERNMKLEFERNYERYQFL
                     NWATKAFDNYNAVPPATGIVHQVNLEYLANVVHVREENGEQVAFPDTLVGTDSHTTMI
                     NGLGVLGWGVGGIEAEAGMLGQPSYFPIPEVIGVRLTNELPQGANATDLALRVTELLR
                     KKGVVGKFVEFFGPGVDKLPLADRATIANMAPEYGATCGFFPVDDETLKYLRLTGRSD
                     EHIETVETYLKQNHLFFDVNEEPNYTDVVDLDLSTVEASLSGPKRPQDLIFLSDMKKE
                     FEKSVTAPAGNQGHGLDKAEFDKTATVNFKDGSTTEMTTGDIAIAAITSCTNTSNPYV
                     MLGAGLLAKKAVEKGLEVPSYVKTSLAPGSKVVTGYLRDSGLQSYLDQLGFNLVGYGC
                     TTCIGNSGPLLEEIEKAIADEDLLVTSVLSGNRNFEGRIHPLVKANYLASPPLVVAYA
                     LAGTVDIDLHSEALGQDQQGNDVFLKDIWPSIQEVADAVESVVTPELFKEEYKSVYDN
                     NELWNQIDTTDQPLYDFDPQSTYIQNPTFFQGLSKEPSAIQPLSNLRVMGKFGDSVTT
                     DHISPAGAIGKDTPAGQYLTSNGVSPRDFNSYGSRRGNHEVMVRGTFANIRIKNQLAP
                     GTEGGYTTYWPTGEVMPIFDAAMKYKEDGTGLVVLAGNDYGMGSSRDWAAKGTNLLGV
                     KTVIAQSYERIHRSNLVMMGVLPLQFKEGESADTLGLDGTETIAVDLDENVQPGQTVK
                     VTATKEDGTTVEFDVTARFDSNVEIDYYRHGGILQLVLRKKLASA"
BASE COUNT         8427 a         5806 c         4547 g         8619 t
ORIGIN      
        1 aaatttccaa ttgcgcattt ttcatccaaa ataaaaagcc agtcgctttg cattacacaa
       61 agtacgggct tttcatcgtt tgtttatcgt ttgatttttg agcgcaatcg atttaacaca
      121 tcaaatacga aatattttac tttatgaatt ggtttataga agtctccaac gagttcttca
      181 atttgtacac cgaatccacg tttaaagcga tacacaccat agtcttcact attctcagtg
      241 aaatcgcctg atacaccata aaagttatag cgctcataac catggtcaaa gcaataatta
      301 atcataaacc aatgcatcgc gtaaggtccc ataaagtgat tgtatttctc actagaaccg
      361 ccagagaagt aattaatttc atacgcattc gcaaaataaa cacctgctgc taagtttaaa
      421 acagagccgt ccgttttacg caattcgcta gcttttaaca tctcttgttg atcatggtcg
      481 atttgtttat ctaattccgc aattttctta atttgcttat ccgacttgtt ttcattcgcc
      541 atcatttggt cacggcgtgt ttctttgtca tttaaacttt cttgcaacga cgtaatatac
      601 tcatctagat caatatatgc taatggtacg agcgctttat gaccatatgt gttgataaag
      661 tttttaaagt attcgtccgt tttagacaca aaacctgcac gttcttcagt ttcgcgatat
      721 aactctaaaa attgatcaaa ttcatccact tcaagaaatc ttactttcac gccaaaattc
      781 gtcgctttat taatattacg tttgcgctgg ctatcgaatt gcttcttcaa cgtttgtggt
      841 gtatgacctt ttaaatccaa tacacccatc catctcactt gacttgacgt atcataggat
      901 gttgtaaaac cgtgatgacg gtaaccgtgt gacttaaata gctgtactag cttatcgtta
      961 ggcattttgt cgcccatggg atgaatgtct ttatcataca cttgataaat ccaatacggg
     1021 tccattttga catataaaca tttatttcta tttaaatatt ggtctaattc ctttaaataa
     1081 aaatcggcta atcccaaatc gctataatcc atgaccggac cacgatttga ataatataca
     1141 taacttcctg ctgttggaat tttggaaaat aagctcgctg ctaaaacttg gttgttgtca
     1201 tctttcacgc ctaacagtac cacttgaaaa tcgtctgctt ctcgtgttgc aatattttct
     1261 tttacctgaa aataatgact ttctaatgca ggattttgaa caaattggtc gtattcttca
     1321 actgtcaatt ctgtaaattt cataccaata aatccccttc tcttcactca tcttatcttt
     1381 taatcttctc tttaagctgt tttaacgtcg tataaatctt atagaccggt tttcgaacgg
     1441 gtttaataaa atcacctacg tactcaatga catctgcgtt ataacctttt ttaaatttga
     1501 ccacgccagc atcttccgca tcttcagtaa agtgtccact aatgccataa aagttgtaac
     1561 gtggaatatg gtgttcaatt gcgtagttaa tcatttccca ttgaatggca tagcttcctg
     1621 caaaatgacg gaattcattt gctgtgccac ccgcataata cacgacttca aacggattaa
     1681 taataaagaa acctgctgat atcggtaacg tgtcaccatg tttcgcttgt aattgctccg
     1741 cttcttgaat tttagcttga ttcgcttcta actgttgcat taaattgttc tttttattca
     1801 atgatttttg gttatctggg cgtttctcaa gttctttttc agttttagca atttgtttat
     1861 ggaaatcttg ctcttcagat tttagctctg gtatatacgt tgtaaaatcg atgtaagcta
     1921 aaggtacgag tacacgatct ttatagtgtt tgaggcggtg atagtaaaaa tcatcttcac
     1981 ggtccacaaa gtcttttgtt tccgacgtct cttccatgaa cgaacggaaa atatgtaact
     2041 cattttcatc caaaaagcgc actttcacac catttttttg cacttttttc gtattacgct
     2101 ttctcaaact atccatattg ttcagtatat ctttcgccgt tttaccttca acatctaata
     2161 cagaatggaa tcgaatttgt ctcactgtat caaatcccgt tgtaaaacct tcgtgttcaa
     2221 agccgagttg tgtcattttg tcaaagaacc aatcattttg gaatcgttca atcacttcgc
     2281 catcatgatt gcgttttaac attggcaagt atggatcgac tctgacatat aacgcattgt
     2341 attttttaac atattttgcg agttcattaa aaaagaaatg aacgagttct tgattttcat
     2401 aatccatcac aggaccacgg ttcgtataaa agtatttgaa cactttcatg acgggtactg
     2461 cagttaataa acaagcggct aatacttggt tatgattatc tttaatacca acgagatgtg
     2521 tttcgacacc ttctgccacc ttcagctcgt agttccctac catttgtgta aaatggctgt
     2581 atggcatact atctgtgaac gcaccgaatt ctgccgtcgt taaatttgta aacttcattt
     2641 ttaatactcc tatttctctt tatatctttt agcgatatta catttctgat atacccttat
     2701 tacattatct taaaaagaca tacaatcttt ttcatttccc tcataaacac ccttatagtc
     2761 tttctacatt ttaacgtatt gtgtaacaat tcgccaacaa gacgtggtac gactacagta
     2821 atttcgaaaa acaataggcc tctaataatg cttgtgctgc tttaatcgaa tccaaatgcg
     2881 tccgttccat tgcatgagaa gactcaatac ctgcaccgaa aaggccgtgc tttacatctg
     2941 cacctgcttt taacgccgct gaagcatctg aggcatagaa tgggtagaga tccactttat
     3001 aagggatatt gtgtttctga cataacgata cgagatgatg gcgtagttgt ttatgatacg
     3061 gtcctgaggc atcttgtgca caaatcgaca ccgtatattc atcggacgct tgaccatccc
     3121 ctaatgcacc catatcaaat gctataaact caacaacttt tgggtcaata tttgaatttg
     3181 cgccataacc aatttcttca ttattcgaaa tataaaactg aatcgtatgc ggtaaacggt
     3241 cctcacgatg acgatactgt tttaaaaatt cgataataat cgcaacactg actttatcat
     3301 ctaaatgacg cgacttaata aaacctgaag ctgtcacttc tgtacgtgga tcaaagctta
     3361 caaaatcacc tacatcaata cctagctcac gcgtttcatc ggctgacgtc actttctcat
     3421 caatgcggac ttcaatatgc tcttgattac gtggaatttc atggttattc gcataaacgt
     3481 gtggcgacgt ttcatgcaat agtattgtcc ctcggtacgt ctgacctgtt gttgtttcaa
     3541 tcgtacagta ttcaccttca attgcgttgt aacggaaacc accaattaac gctaatcgaa
     3601 gacgtccatt atctaaaatt tctttgacca ttgcgcctaa tgtatctaca tgcgccgtaa
     3661 tacatttttt ctctgtatca tcgtcgcctt ttacttcaat caataagccg cccttcctcg
     3721 ttaactgtgt gttataacca taagcctcca cggtttgctg tacatacgct atcgcacgat
     3781 ccgcgttacc tgatggacta ttaatcgtag ttagagctgt taaagtttca atcacagatt
     3841 cattcattga tatgtcctcc cttgcctctt tgtttctatt gtaccgatga ttctataaaa
     3901 tctcacgtat tcatataagt actattgcaa ttaaacgcgt taaaatgtta aactatggca
     3961 tatttaataa aaatagaggc ggtgttagcg tgactcacgt gttttttgtt ggtttaggtt
     4021 taataggagg cagtttagca agtaatattc aatattttca tccagacatc acgatttcag
     4081 cttatgatgc acattacgaa caattagaac gtgccgtatc cattggcatt atcgatcaag
     4141 catctgcaga ttacgaatcg actttacaag aagcagatat cgttatcttt gcaacacctg
     4201 tacaaacgac agtgcaatat ttaagccagc ttcctcaaat gaaaacgaaa tctggtttaa
     4261 ttgttacaga tacagggagt acaaaatcta ctattcaagc atttgaaaag gaattactct
     4321 cggctgacat ccatcttatc ggtgggcatc ccatggcagg cagtcataaa tccggtgttc
     4381 tgaatgcaaa aaaacatctc tttgaaaatg cctactatat ccttgttcat cagttaacag
     4441 aaaaccaaga ggccgcgcaa cgtattgaac atttgcttgc accgactcgc gcgcgtttta
     4501 ttcatttaac tgctgatgaa catgaccaaa ttacaggggt tgtcagccat gtccctcatc
     4561 tcattgcttc gagtcttgta catttaaatg ctttttacgc agcggacgtg ccattaattc
     4621 aagacttagc tgcaggaggc tttagagata ttacacgtgt tgcaagtagt aaccctgaga
     4681 tgtggcgcga catatccatt gaaaataaag cgcatatcgt ttcatcattg aagcaactac
     4741 aacaacagct tactgaaacc gtggatatgc ttgaacaagg gcacgaggag gcgttatatc
     4801 aatttttcga ccaagctaaa acgtaccgtg atggcctacc tattcgaggt aaaggtgcaa
     4861 tgcaaagcac gtatgatctt tacgtagata ttcctgataa accggggatg atttcgaaag
     4921 tgactgaaat attaagtcag catcaaattt ctatacggaa ccttcgaatt ttagaagtgc
     4981 gtgaggatat ttacggtgct ttacgtatta gctttaaaaa ggctgaagac cgcgacgcag
     5041 cgatgaccgc gctttctgat tttgatacgt atttaagtta acgtcccacg gtggtatatg
     5101 cacattaggc ctgaactatt atctccaagc ctaatgtgat accataacgg ggctttttac
     5161 atctgatgcc ctgccattaa tcctaaacga ccgtatttgg tacccgcttc agtcaaggaa
     5221 atcgcttttg atacgacgcc ttttccatat ttggtttgta acgcatcaat cgttttcgcc
     5281 aacttctctt gacgcagtcg ttgaaattca tccgtaaaca aatctagatt gcgttcgttt
     5341 tcattcatca attgtgtaag tgatacactg agcgtccgat acaacgctcc ttgatcacaa
     5401 tgcatgtccg ctaaacgctt cacttcttta taaatgtctt gatctaaatt tgttcctgta
     5461 tgtaacgtat actgcttcgt cacatggccg ccctctttgt aacccataga aaaatgaatc
     5521 gttcgtgcaa tttgctgacg cgctctcaaa cgttgtgcca catcttcaat caattcttgc
     5581 atgacgacat gtgcttcacg atacgtataa tcacgtagca aaatttgact tttacatatc
     5641 gaaggattaa tgatttgata cgcctcattc atccgacttt gatctatccc gtgtgcatgt
     5701 agatgccaat ccacccctaa aataccgaag tcccgcttca aatattcata tggatagtgt
     5761 gccagttgtc caattttaaa tatccctctt tgatttaatt tcttctctgt ctttttacca
     5821 ataccccaaa acgaactgag cggcgtaatt tcccacactt tgtcaggtac atcttgataa
     5881 cgccattccg caatatcatc cggatgtttt ttcgcctcat gatccagtgc taatttactg
     5941 agcaacatat tcgagccaat ccctatcgcg caatgcactt tcgtttcatc ataaatttct
     6001 ttaatcagac gctcacaaaa cgtatgtaac gtcgtattga agtgataata actctttgtc
     6061 acatccataa agaactcatc aatgctgtac tgatgtaaat cttcaggcgg cacatagcgg
     6121 agtgcaattt cagaaatttt aagcgacact tccaaataac gccgcatact cggattaata
     6181 atataaatgt cattatgatg tggaatttca aacaaacgcg aacctgtctg aatccccatc
     6241 gctttcagag aaggtgtcgc agcaagtaca acagaccctt gccttttcgt atctgcaacg
     6301 actgcgagtt ttgtcgtcaa tggatcgagc cctttctcaa tacaagacac actcgcaaaa
     6361 aaactttttt gatcaataca tagaatgtcc ctatcttcta ataaatgata atcatacatc
     6421 acatttcacc cttacttatc aacctgatgt ttttagtata cacgaacact tgttctataa
     6481 tcaagttaaa acgaatgtac gttctgttaa tcataaaaaa taaaggtagc tacggttaat
     6541 ataggaccac atctacctta aagtcatgcc attaacgatg atatggaatg accgcttcag
     6601 tttcctcatc aacgccataa tcaatataaa catgtgtatt gaggtaaaca tgacttttat
     6661 cagatttgaa attcaatgta tcagggtgaa aatgaaatgg aatctctttt tcttcaccga
     6721 catcaatgat aaacgcttcg tctatctcaa agcgattcaa ttcatgcgaa atcgttgtaa
     6781 aatcactcgt ttcatcatca ttctcatatt tttcaatcat cgttaatacg atatgattca
     6841 ctttttgatc actttgccct gcttttaaat ggattgttcc ggcaatcgca tcagatacat
     6901 caaacgtttg ctgttctaat cgaataaaca ctttcatacc attgatgcct agagatgtta
     6961 atacgttgtc aaaacccata aaatccctcc atatttcatt tctttactct tatcataccg
     7021 ggtaatgatt ctatcgtgca actatgaggg aaaatggtat aatataggta aagtattagg
     7081 aggtaggaac atgccaatag taacagttca attattagag gggcgcagtg acgaacaatt
     7141 aaaaaattta gttaaagaag tgacaaatgc tgtggaaagt acaaccaatg ctgaccgtag
     7201 tgcaatttct gtagtcattc aagaaatgaa aaaagaacat tacggtgtcg ctggcgtacg
     7261 taaatctgac caataaaatc aaagcacata caaaacgagc ctgagcgaaa cactcagact
     7321 cgttttatac tttagtcttc caaaaaggct ttaattctct ttttattttc agctttatca
     7381 atacctaaag ctgatccccc atcattcgtc gtaatatttt catagctgcc ttttacgggt
     7441 acactgaggg ttttaatatc tttatctcct cgaacgataa aactgaatcc tgtttgataa
     7501 atcgttgaat ccggcatatc ggtactcaca taaccacgca taatacctgc gagcttcggt
     7561 gctttgaaaa tagatgaagg ttgaaccaat tgctgcttta atgccgtcat gacttgctgt
     7621 tgtcttcgca cacgcccaaa gtcaccttct gggtcattac gaaaacgcgc ataaccaagc
     7681 aactctttac catttaagcg atgattccct tttttcaaag atacaccaat tttttcggac
     7741 atatcttttt ctacgttaat cggtatacct tttggcgcaa gctcatcaat catagcttca
     7801 aagcctttaa aatctaaagt ggcgtaatat tccggatcaa tccctaagtt cgactttaac
     7861 gtttggcgca atagctcagg cccacctaac gaataagccg cattaatttt ataactgttg
     7921 tatccaggaa tatcggcata aatatcacgc atcacagaga cgattttcat atctttctta
     7981 atatagtcat attgtgcgac cataatcgag tcagtacgtg ataccccacc atcttcacgg
     8041 tcagcaccta aaatgagtac ggttgcttta ccatcatttt ttgatgcgcc attgaatttg
     8101 tgtatctttg gagcttgatg cttgtcctta gcaacttcaa gtccgttttt gtaacttgaa
     8161 acagcataca cgacagaaac aagaatgata aggatcaacg ccaatatcac aaatggcagt
     8221 tttcgtatct ttctcttttt tcgacgtttc aatgttttct cagaagagtt tgaggtgcta
     8281 cgattcaaat tgttttcttt catcttatca accttatatc ttcaaaattg tgtacttatg
     8341 tattataatt aatacacact aacgttatat aaatttattt taaaaatcaa gtaaaaacaa
     8401 taaaaatggt accaaggtct catataggga aggatgttta gatgaatatc aacacagcat
     8461 atttcgcagg cggttgtttt tggtgtatga cgcagccgtt cgatcaaaac gaaggcattg
     8521 aaaaggtaaa gtctggatat atgggcggac acgtagatca tccgacatat gaacaagtga
     8581 aatcaggcga tacaggacac tatgaaactg taaaaatcga atatgatgtc gcgctttttt
     8641 cttaccaaaa gctgttagaa attttcttct cagtaatcga tccgacagat gacggtggcc
     8701 aattccaaga ccgtggttca caatatcgta ctgcaatttt ttatactaat gaagatcaac
     8761 gtcaagtggc tgaagcgtat attgcttcat tagagggcac attcaatcac gacaaagcga
     8821 ttgcaacaaa agtgttacct gcttcagaat tttatgaagc agaagcctac caccaagatt
     8881 tttataaaaa gcaacctgag cgttttgcac aacaagaagc agaacgtgaa gcttatgcta
     8941 aagaacacgg cattcaataa catatgcaaa aaggctagga aaacttaatg tcctagcctt
     9001 tttctgttat acaccatgaa aaagcacctt catgatacca ccataaaatt gtacacacct
     9061 gtttaaatac acccgctatc attcaagggc ttgggcatag aaaactttaa acctcaatcc
     9121 atacataaat ttaggaaggg caagtttaac aaaaataacg caacgatagc atcaaaagct
     9181 tttatgtcca agtccctaat ttaaatctat attttctttt tacgaatcac ccgtgtgact
     9241 ttcaacaaac tctcccacgc gttttgaccc cggtgataaa tgagaaaacg tgattcccag
     9301 tccggattaa atttactttt atattgacgc aagccttgaa aactatacaa accattaaaa
     9361 tgttcgtaaa aacggccagc aaacttttct cttaagtgac catatggcac ttgaccaaca
     9421 tttgacaaag ttgccatgcc catattaaag cgttcgtaac cttctgcttg tgcccacaaa
     9481 atcatatgca aataaagcgc atccataaac ggcaatccca aagacttatc ccaacgaatt
     9541 aagtcgaccg acaccgttgt tgaaccttct acaggcatca atgtacaaaa cgcatcgata
     9601 cgaccttctt catttttcaa cacagcaacg ggtgccgcat tgacataaga aggtgtaaaa
     9661 cgaccgactg agaaataaaa ttcttgctgt ttccctaacc aattacgact aatgtcatgg
     9721 agacgttcgt atgtcgcttc atctaacggt gtatcgagaa tctcaaactg ataacctaac
     9781 gactctaatt tatttaatgt cgcacggaaa ccacgtcgct tcttccctgc aacggtaaag
     9841 tcagatactg gaatgagcgc ttcttcaccc aatttaaaaa actgattgcc gaaatcatga
     9901 tataacgtca aataattatt agaaacttga taaaaaatga catcgccacc taaatacgtt
     9961 gcatattcat aaaactcggt taacagtgaa tagaagtccg aactgttacc cactggatca
    10021 ccaagtacaa taaatgaact gcgatcgtga cggtacatga taaatgccgt tttctgttcg
    10081 ttcacaaaca caagcttgtc ttcactatac aacaaatgac tcagtagatg gccaccatat
    10141 tgctttaaaa tggcactggc aatttgtcga tcatgcaact ctcttggacg acgataattc
    10201 cattcaaaga tataaatgag cacaactacc aaaatcgtca taccgataat cgacaaccaa
    10261 aacgtcgaac gcagcaagaa gaaatcaact ttaggcggta acacatcaag tgcgaataaa
    10321 aaatcacgca cgatgatttg attgaagtat agcaaaatga cactaatgac gaccatcgct
    10381 aatatacctt tcatgcgtac aggtcgtttc aatacacgtg atttacgata agcaaaaatc
    10441 aatgccgcta aaattaagac aatgatcaca actaacaatg ataatccgta cacgtataaa
    10501 ttagatagta acaagataat catcgctaca atcgcaaata aaatcgcgcg tttacttcgt
    10561 gcaacaattc cgcgtaaatt gagtaataaa atcaaactcg cactaacgtt gaatatgtac
    10621 aacaatgtaa acaataaatg aggttttttg ttagctgcat caaaaataat agagaaattg
    10681 ttaagtaata aaatcaaact catcataaag actaatgtac tcaatgctaa tgatggtact
    10741 aagccaacta agtctttttg aaacgatttt aaaaacccag acaattcttt agccggtaaa
    10801 aagtatttgg attcaagcat atatttacgt gctgctgtac caaattcaaa tacagttaag
    10861 acaagcgcaa tgagtaacgg gaagaaataa tacgcaaaac gataaagtaa taaccctaaa
    10921 acgacctttt cttccgctac tccgagttgt tgtagtccaa gtaagacaat gagatcaaac
    10981 gccccaaagc ctccaggaat aaacgacaac agacctgaaa tcgccgcaac aatgaaaata
    11041 cttaacacga ttggaaatga aacattcacg cctacaagca taaaagagca gtaaagcacg
    11101 atactcgcaa gcaaccattc catgctcgat acaaaagtga atacggaacc taaccaacgc
    11161 gcagaccgat caaccggtga tacccatgaa ataataataa aaacgggtaa taaaaacgct
    11221 acaatataga gaaaaacagt aaaccatacc gatgtccgat ctaaaaaact aacatctaag
    11281 acatgcgtca caatgagtat ggataaaaaa cttaaacctg ttaacatgga cgtcaacatg
    11341 tatgaaacga atttgactaa ctttttacgt tcagtcgtat acgaaccata aaaccacaat
    11401 cgtacgctcg caccaataaa accgccaaaa ccgataatat tgttgaacgc attaataata
    11461 tagccgacac gtaatgcttt aaattttgat aaagataact taaagcgcgt cgtcaaaatc
    11521 acatcataaa gtgataacaa aatcaccgaa ctcccgccga gtaaaaaaag actgaacgtt
    11581 tccattcggc taatttcatt aaataaaaga aagacacgtt taaaatcaat atgtgctaat
    11641 tctcgtccta atatgataga aatcgttaca atcaaaaaga gtataaacgc aattttgaaa
    11701 tattttaacc aaagctgttt tgtcatgaat aggggtcctt tctttagtgt aatgactgtg
    11761 tatgcttata aaaagagatt gagcttcaca aaaccgccca atctcgtcat gttacactca
    11821 tttaatcttt actatattcc tctttaggca tctcataagg gcctgcatca tccgcataat
    11881 atttattgta gcgacgtttg aacagtagga agatatgcga aacaagtact tttaaaattg
    11941 cataacttgg aatcccaaga atgacgccga caacgccgag taagttccca gcacttaaaa
    12001 gcacaaagat aatcgttaaa ggatgaatct tcagggtttt acccataata ttaggtgaaa
    12061 taaagtgccc ttcaataaac tgtactgccg tccataccac aatcaactta atcaacataa
    12121 acggtgatgt aataattgaa atgataatcg ctggcgaaat agcaatcgta ggccctaaat
    12181 aaggtactac actcgtaaca gctgcgatac tggctaaaat taaagcatag tctaaaccga
    12241 taatcgaata accaataaac agtaaaatac cgatacaaaa tgacacgata atttgtcctt
    12301 gaatgtatga gccgacttgt tcactcattt tatccaacaa atcgtgtaca tctttacgaa
    12361 attttggcgg tacaatttta tttgaaaact ctttaaaacg atgaccatct tttaacatga
    12421 agaataacac aaacggtacc gtaatgataa cgactgtaat attcacgaca gcttcagcga
    12481 aaacacgaat tttagaactc aagccatctg caaaagtagg gatcttctcc tgcaaaccag
    12541 tcacagcctt ttcaatttgt gaatagtaat ccgataaaaa cggaatgtgc atcatgttgt
    12601 tagcgaatga tgtcaatttg tttaaataat tcgggaaatt gtccatcaag cgatcaaatt
    12661 gaaaagatac aatcggaatt agcaagttca ctgcgatagt aatcatacca atgattccta
    12721 aaaacaaaat cgtaatgccc caaatacggt taatattgta tcgttccatc aaattaatga
    12781 caggattgaa taagtaatac agaatgagcg cgataataat cggtgctgca atcgtattaa
    12841 aaatgataat aaagggttga aaaatatatg aaacgcgatc gaatataaaa atcacaattc
    12901 caactaaaat aaaaacgagt aacgcaaaaa tgagatcttt gcctccgaaa aacttcatga
    12961 aacggctttc tcggatatca atgttttttg aaactccatt ttgcttatgt tgattttcag
    13021 acatatcatt caccaagcct tttcgaaatt acttatagtt tatcgttttt cacgtcagat
    13081 tgaaacttaa aacctattat atcaaagtat ttttctaggt acgccgtttt aatgacatca
    13141 tctattcatt tcagtcgtat gtatctttca aataatcgga caagatctcg aggtttcatc
    13201 acgtacacac caaatgaatg cacagtaagt acgaagcgaa gagaataaac gcaaaaaaga
    13261 ctaggacaac atcctagcct ctttgttagt tacaacttag atttcaaata acttgtcacc
    13321 atgtttgaca tctttcgcct ctgtaaattt taacgctgtc acttcggatt gcgtcacaat
    13381 aatcggcgtg atatcacttt tcgcagatgc gcggataagc tctaagtcca ctgtcattaa
    13441 atgatcgccc gcttttatcg tttgaccttc ttcaacatga actgtaaacc cttcaccgtt
    13501 taattttaca gtatctaaac caacatgaat caataattct aaaccattgt cagacactag
    13561 gccgaatgca tgtttagttg ggaaaatcat ttgaatctta ccatcaaatg gtgcatacac
    13621 ttcaccactc gttggacgaa ttgcaatccc ttcacccatc attttttcac taaagacttg
    13681 atcgggtact tcagataatg gtacaacctc accatccatt ggcgcgacaa cttgtcctgt
    13741 tttcgtaaca gccgtcgtgt ctgcagcttc atcaatcaca actgcttcgt ccttatcttc
    13801 atctaaatct acagggtgtt gtacagcttg acctgacata atttgttgca tttcgtgttt
    13861 gatttggtct gatttcggtc cgaaaatcgc ttgcatattg ttgccgactt ctaaaacacc
    13921 tgaagcacct aaatctttca aacgtgctac gtcgactttt gatttatcgt tcacttcaac
    13981 acgtaatctt gtaatacatg catctaaatg cttgatgtta tctttgtcac ccatcgcttg
    14041 taatacagca taaggcaatt cgcttgcagt cgttgtcgtc gtttcagttt gtttatcctc
    14101 acgtcctggc gttttgtaat tcatcttcgt aattaagaag cggaagattg aataataaat
    14161 aacaccatac acaagtccga ctggaatcac gagccaccaa tgcgttttat ttggcaagat
    14221 accgagtaat acaaagtcga taaagccacc agagaatgtg taacctaaat gtaaatcaag
    14281 caagtataaa attaagaaac ttaaaccgtc taatatagca tgaataaaga ataataatgg
    14341 tgctacaaat aaaaatgaaa actctaatgg ttctgtaata cctgttaaga atgatgttaa
    14401 tgctgctgaa cccatcaaac cggcaactac ttttttgttt tcaggttttg cagtatgata
    14461 aatcgctaat gctgcagctg gtaaaccgaa catcattact gggaattcac cttgcatgaa
    14521 tttacctgct gttaagtttg taccttcacg aatttgttcg ataaagatac gttggtcacc
    14581 acgaataatt tcacccgcca tatttgtata tgaaccaaat tcaaaccaga atggcgcatg
    14641 gaaaatatgg tgtaaaccga atggaattaa taaacgctta ataaaaccaa ataaaaagac
    14701 tgctaaaccc gtgttggaat ctaataaccc ttcactgaat gcgtttaaac cattttgaat
    14761 cactggccaa acgagtgcca ttgggaatgc aagtaaaaat gatgttgtcg ccatcacaat
    14821 tggtacaaat cgttttcctg caaagaagcc aagatatgac ggtaacgaaa tgttataaaa
    14881 cttgttgtaa caccatgccg cgagagcacc gataatgata cccccgaaca cccctgtttg
    14941 taatgtcgga atacctaaga cgctcgcata acctttcgca gcgtcaccca cattgtcagg
    15001 agtaacccct aaaaattcac ccatcgtttt gttcaaaatg ataaaaccaa cgaatgctgc
    15061 aatggctgca accccgtcac cgcctgctaa accaatcgca acacccatag caaaaataat
    15121 tggcaagttt tcaaaaatga tactaccggc tgctgccatc atttctgcga cgttttgtac
    15181 cccatcagct tgaatgaatg gtaaatacga ttgcagttgt tccccttgta atgctgcacc
    15241 gaatgcgagt aacaaaccgg cagctggtaa aatcgcaaca ggtaacatta atgctttacc
    15301 gatacgttgc aattgtccaa atagtttttt cctcactgta agccctccta ttttgttgac
    15361 acaacacaaa aaatgcatga gtaaaaagct gcgagcgttt tgcccacaat tttcaactca
    15421 tgcctaatct cacttagtaa cacgttttat gattgatttt gagatgccag tgacagttgc
    15481 tgaatgtgca tcgttaaata tgcgacttcg gcttcgtcca ctcgtacatc aatttgtgat
    15541 tgtatcattt taactatttt aacagctaca ttatagcata acggatattg tgccttcaat
    15601 aggttttcaa aactcagttc aattgtcgta cgttcgcctt ttttcaaccg ttgtaacaga
    15661 aaatgaatat gtctcacaaa ccgttgatac tgaatggatg caactggaat ttgtattttc
    15721 atatcatgtt caatcattcg aatcgcattg ttaatcaact tcggtacata ttgcatttca
    15781 ctcaaatcaa tatcatctgt ttgagaggca atatgcagcg caataaaacc aacttcatct
    15841 tctggaaagt ctgtgttcaa ttgcaagtta atacgcgcca ctactttttt cgcgatttta
    15901 tacgcttctg gataactgta tttcgtctca cttaaaaacg gatttttaat taactgtccc
    15961 ttttccaagc gtttcaatgc aaaaattaag tgatcggtta aggagacgat aaatgattct
    16021 tcatgatgca gttcaaaatg cgtcattata atttgtacag aatcaatgac cgcacgtaag
    16081 acacgttcat cggtatgtgc cactaacatc ttgtaatggt cttgttcatt tttattttct
    16141 agtttaaaca ctttttcaat cgtatcaaga tcattgattt tcatccctgg ctttttgtta
    16201 aatccaagac ctttaccaat gataacgact tctgattgtt gatattcgca aatgagcacg
    16261 ttattgttga ggactttttt tatcgtatat tgattcactt ttatgtcacc tcttcaaagt
    16321 acaattcaaa tcatataacg aaatgactat aattgaaagc actaattttc gaagttgaaa
    16381 tttgtacgac actttttatt tattaatata tagtattgtt cgcttcatca tagtagaaaa
    16441 cgtctataaa ataaaagggc tacaggcaaa atgctgcccc agccctctac aaattaatct
    16501 tcttttttat ttttatggat ggcgttaccc caagattcga taccaaataa attgatttct
    16561 aaattttctg gtctgaaaat cggacgcttg ccttctttac gttgacgttg atagtctcgc
    16621 atgactgcaa aagcaatatt ggacaggccg ataatggcga taatgttaac gatagccatt
    16681 aatcccataa atacgtcagc agtattccaa actgtttcag tctttacaac agcgcctacg
    16741 aatacgagaa taacgacaaa acaacggaaa ataaatagca caaccttatt agtagataaa
    16801 aattcaatat tagattgtcc atagtaatag ttacctataa cggatgagaa tgcaaataat
    16861 gcaacagcta tagataagaa tacgccacct gcactaccta agtgttcgtt taacgcagat
    16921 tgtgttacgg caacaccttg tgcttcacct tcaccaaatt tcaagcctga atataataaa
    16981 atcataatcg ctgtcgctgt acaaactaaa atcgtatcaa agaagacacc taatgattga
    17041 attaaacctt gcttgacagg gtgtgatact gcggcagttg cagctgcgtt cggtgcagaa
    17101 cccatccctg cttcatttga gaaaagacca cgtttcacac cttgtagtac agcgaaacca
    17161 actgcaccac ctgttgcctg gtcaataccg aaagcacttt taatgattgt agaaatcatc
    17221 gggaaaattt gatcgatgtt catcactaaa atgactaaca cgattaaaat ataaataatc
    17281 gccatcactg gtacaatcac tgatgataat gttgcaatac ttcgcacacc accgaaaata
    17341 acaatcgctg taataactgc taaaatgatc cctgtcacca acggactaat gtgatattgc
    17401 gtatttaatg actcagcaat cgtgtttgat tgtactgtgt taaatacaaa cgcgaatgtc
    17461 acagtgatca atatcgcaaa taaaacacct aaccaacgtt gattcagccc ttttgtgatg
    17521 tagtatgcag gaccaccgcg gaagccccct tctttatcag gtactttata aacttgtgct
    17581 aacgttgctt cgataaaggc actcgctgca ccaatgattg caataatcca catccaaaat
    17641 accgcaccag gaccgccaag tacaatcgca gttgccacac ctgcaatatt ccctgtacct
    17701 acacgtgagc cggcactaat agcgaaagct tggaatgacg aaatcccctt cttaccactt
    17761 tcaagagttt cggatttatc ggttaatgca cgaaacatct caggaagcca tcgaatttgg
    17821 acgaattttg aactaatcga gaaaaacaag cctactgtca acagtaaccc gattaagtat
    17881 tgtgaccaaa tcaagtcgtt tcctatttga ataaatgctt taaaccaatc cggaattaaa
    17941 ctatcaaaat ctctcactcg aacccctctt tactcttcag tttaaatgtc agtgtcattt
    18001 taaaataact agtctcattt tatcatcatt gtgcaaaagt gactatctat tttttaatac
    18061 tagtccacat ataggtcttc aatttcaccg aatgtactcg tatcaaccac aaaactacca
    18121 tttgtgtact gttctgacaa gtgaatgtct ttaatcaatc ctgttgtctc atcttgttga
    18181 gatacaagtc gatattgtga ctgctcaggg cgacatacac gtgctgcaac gacgcggtgt
    18241 ggttgctttt tcaactcttt taataacgta ataccacgtt gtgcacgttt cgcttgttgt
    18301 aacactttaa aaccaatgcg cttcaatgca ccgcgttgtg tcgcaattaa aatcgtgtct
    18361 tctgtttgaa tgtgatcagc taggacgaca tgatcttcgt cttttaggtt aattgcttta
    18421 atccctgttg cacgtaatcc agtatctggc agttcagaca tcggataagt cagtgacatg
    18481 cctcggtgtg ttaacaatgt aatgagttgc gacgacgcat ctgctggcac aagcatcact
    18541 gaaatgagcg catcgctttc tttcactttc atcgctacga gcggctttgt tgtccgtgtt
    18601 gacttaaagc cagacaataa acttttctta atcataccta ggcgtgtcgc tgtaatgatt
    18661 gcgcgctcat cattgaattc agacacagtg taacaatcta ccacacgttc atcttcttca
    18721 attggcacga tttgagatac atgttgaccc aaatctttcc atttcacgtc aggcaattta
    18781 tgcacaggta tgagcaagta acgtccttta ttcgtaaaga ccatcgcgta atcttgtgta
    18841 ttggtttcaa tgattttcaa cactccatca cgctctttta agccaatttc ttctttacca
    18901 ctcgcattga aacttcttag cgatgtccgt ttaatatacc cttcttgtgt cagacttaac
    18961 atgactgttt cacttggaac aatcacttct ttatcgattt taatttcaga aattttctct
    19021 tcaatgaccg aaaggcgtgg ttgtttaaat tgctttttga tttcagataa ctcttcttta
    19081 atcacatcga gtaacgcatc gtgattttct aaaatatgtt tcaatgccgc aattttttgt
    19141 ttgagtgcat catactcttc ttgcagtgcc acaatgtcgg tattcgttaa acgataaagt
    19201 tgtaacatca caatggcttc tgcttgcgct tctgtaaagt catacgtttt aactaaattc
    19261 tctttcgcat cacgcttatt ttttgaattt cgaattaatg cgatgacttc atctagaata
    19321 gaaagagcct tcattagccc ttcaacaata tgcatgcgct cttctgtatg ttttaaatca
    19381 aagcttgtac gacgtgtaac aacctcaatt tggtggttga gataactact aataatcggc
    19441 ttgattccca ttaatttcgg gcgtccttcc gtaatcgcaa ccatgttgaa gttgtacgcc
    19501 acttgtagat cagtattttt gtataagaag tttaaaattg atgtcgcatt aacatctttt
    19561 ttcaattcaa cagcgacacg tagaccactt cgatccgttt catcacgcac ttcgacaatc
    19621 ccttccacct ttttgtccgc acgtaactca tcaatctttt tcacgagact acttttattc
    19681 acttcgtatg gaatttctgt cacgataatt tgactacggc cattacgcaa cgtttcaatg
    19741 tcagctttag cacgtacaac gactttccct ttacctgttt cataagcttt tttaatgcca
    19801 tcgatgcctt gaacaatacc acctgtcgga aaatcaggcc ctttaatata tttcatgagc
    19861 tgtttcactg tcagatcagg attgtcgata tatttcaacg tcgccgtaat gacttccgct
    19921 aagttgtgcg gtggaatatc cgtcgcgtaa cccgctgaaa tccctgtcga accattcacc
    19981 aataaatttg gaaagcgtgc cggtaagacc ataggctcca tttcggtatc atcatagttc
    20041 ggcacaaaat cgacagtatc tttattaata tcacgtaaaa tttgttcaga taactgactt
    20101 aatttcgctt cagtgtaacg catcgcagca ggagggtcat tatcgatact cccgttattt
    20161 ccgtgcattt caacgagcac gtgacgtaat ttccagtctt gactcaaacg gaccattgca
    20221 tcatacacag aaatatcccc gtgcggatgc aactgaccaa tcacgtcccc gactgttttg
    20281 gcacttttac gaaaatgttt atcatacgta ttgccattcg aatacatcga atacagaata
    20341 cgacgctgca ccggtttcaa tccatcgcgc acatcaggca aagcacgctc ttgaatgatg
    20401 tatttactgt agcgaccaaa acgatcacca ataacgtcaa ctaaaggtaa attttggatg
    20461 atttcagcca ttatgcgtcc tcctctgcaa tatcgtcatc tgataaaatc tgaatttctt
    20521 cattttctaa aatacttaga tcttcttgca taccgaattg aacatggcgc tcaatccatt
    20581 cacgtctcgg tgctacttta tcacccatca atgttgagac acgttgcgac gagcgaactt
    20641 catcgtctat ttgcacacga atcagtgtac gtgtttcagg attcatcgtt gtttcccata
    20701 actgatctgg gttcatttca cctaaacctt tgtaacgttg aagcacgaaa cctttaccca
    20761 tttcacgttg taacttttct aattcttcat ctgtccaagc gtatgcaatc tttttatttt
    20821 tgcctttccc tttttctaac ttataaaggg gtggtaaggc gatgtaaaca cgtcctgcca
    20881 tcacaagtgg tctcatatat ttgaagaaga atgtcaataa caatacttga atgtgcgcac
    20941 cgtctgtatc cgcatcggtc ataataataa tgcggttgta gttgctgtct tttaagttaa
    21001 aatcattccc cacgcctgca ccaatcgtat gaataatcgt attaatttct tcatttttaa
    21061 aaatatcttc taaacgtgct ttttcagtgt taatgacttt accgcgcaat ggtaaaatcg
    21121 cttgaaattt acggtcacgg cctaacttag cagatccccc cgctgagtca ccttcgacta
    21181 agtacagttc atttttttca gtatttttac tttgtgccgg cgttaattta cccgataata
    21241 acgtgtcttt acgtttattc tttttaccag aacgtgcatc ttctctcgct ttgcgtgctg
    21301 cttcacgtgc ttgttgtgct ttgattgctt ttttaacgag tgatttagac aattgtccct
    21361 tttcctctaa ataaaacggc aatttctcag ccacaatcgc atcaactgca cttcttgctt
    21421 ctggcgtgcc aagtttagac ttcgtttgac cttcgaattg taataaatgt tcaggaattc
    21481 gtactgaaat aatagcagtt aaaccttcac gaatatcatt accttctaaa tttttatctt
    21541 tcgctttcaa atcgccaatt cgacgagcat attcgttaaa tacacgtgtc atcgcagttt
    21601 taaaaccaac ttcatgcgtc ccaccatctt ttgtacgcac attgttaacg aagctcataa
    21661 tactttcaga gtactgatca ttatattgga atgacacatc gacctcaatt tcattcgctg
    21721 taccttggaa caaagcaaca tcatgcagca cttctttacc ttcattgaca tagctcacaa
    21781 aagctttaat gccttcttcg taatgataca cttcgctacg ttcttttcct acacgacgat
    21841 cttctaatgt gatttttaaa ttttgcaata aaaatgcaga ctcttgaaga cgctcactta
    21901 aagtttcaaa attaaagctt gtagcagatt ggaaaatttc agcatctggc ttaaatgtaa
    21961 cagttgtacc cgtttttttc gtctttcctt ttttaatcaa tttcgtctga ggtacgccac
    22021 cgtgagcgaa ctgctgttca aaaatttcgc cgtcacgatg aatttctaca gacagtgatt
    22081 cacttaaagc attaactacc gatgccccta caccatgcag accacctgac gttttgtagc
    22141 cgccttgacc gaatttgcca cctgcgtgca ataccgtaaa aatcacttca acagtcggct
    22201 tacctgaacg gtgtgtccct gttggcatgc cgcgaccgtt atccgccaca gtgatgcttt
    22261 cgtcttcatt gattgttacg ttaatttcgt tcccgtaacc atttaaaatt tcatctacag
    22321 agttatccac gacttcatat actaaatggt gcaaaccgcg cttatctgta gaacctatgt
    22381 acatgcctgg tcttttacgt acggcttcaa gtccttctaa aacttgaatc gcatcatcag
    22441 agtaattatt aacctttttt gcagacactc aattcccctc ctacaaacat acgttcgttt
    22501 atcaaactat acaatagcta ttcttatata aatcaaggta aaatgcaagc ctaatctaaa
    22561 tagcagtaaa aattaatatt atttttatgt gtatcgacta ttgattacaa actgttatct
    22621 atgtaaaatc ataatgaatc aatgatacac ttttaaattc attaatagca taaagcaatt
    22681 caataaaata taaaaatacc tcatcttctc ttaaattatg ttaaaatagg agtaggtact
    22741 aaaaggatgt gaagaatcat ggtgttaatc ctactattca tcgttagcta tttaattggt
    22801 tccataccaa gtggctattt aattggtaag attttcttca aaaaagatat tagaaaatat
    22861 ggtagtggta atatgggagc cacaaatagt tttcgtgtac ttgggaagcc agctggtttt
    22921 gcagtcacat tttttgatat attcaaaggc tttatcgttg tatttttacc tgtacttttc
    22981 aacgtagaaa tacacggttt actcgtggga atttttgcaa ttctaggaca cgtttatccg
    23041 atttacttaa aattccgtgg tggaaaagct gttgcaacaa gtgctggcgt gatgcttgct
    23101 gtcaatccga ttttgttact tattcttgca gctatctttt tcgctatttt gaaattaaca
    23161 aaatacgttt ctttatcaag tattattgca gctatttgtt gtgttattgg ctctttcttt
    23221 gtgagtgatt acattatgct aatcacaagc tttgtagtgg cgatattatt gatttatcga
    23281 catatgagca atattaaacg cattattaaa ggtacagaac cgaaaattaa atggatgtaa
    23341 tcataaagtt ttaaatttca ttgaaaaccc cttacaataa ggttgaatta cattaacctt
    23401 aatattgaaa ggggtttttt acgtgaaaat tgaacttaca gatgacgctg ttgaatggtt
    23461 caaagacgaa ttagaattac ctgaagaagg aaaagtatta caattctatg tgcgttatgg
    23521 cggcgaattc caactcaaac aaggctttag ccccgctttt aatgtagaat ttgaaagtga
    23581 tattgatgaa attggctttg aagaaacatt taatgacatt cgtattgtga ttgcggaaaa
    23641 agacgtttgg tactatgaag atcacaagct ttccatcgac attaacgacg atgaagttat
    23701 ctacacagct gaatccatcg aagcataatt atgtgacgtc aaatgtaaaa aggtgtcgac
    23761 caggaatctt tttttattta tagagatttc tagccgacac ttttttatat ttttattcat
    23821 acactattaa acactgtatt cagcacacct attttattag tctatgtccg agcttttcac
    23881 ttctaaatct tcaccagctt gattacgttg gtccacatca tgatatactg tataccaact
    23941 cggaaatgct ttatctaaac gaacaggttt tcccgcatct tttgtaatga ttacattatc
    24001 tgtatatccc gttgtaacca gctcaccttt tgcattatag atttcatatt gataacgaga
    24061 acgtaagcgc gaaaatcgag aaacccacgt tttaattatc actttttcag ggtatgtcac
    24121 acttttttta tattgaatgt tgagttcagt tactggtgac acaacgcctg cttgttccat
    24181 ttctgcatag tctagaccca gcttgcgtat gtaatctgta cgtgccacct caaaccaagt
    24241 cgcataattt ccgtgataaa tcacacccat ttgatccgtt tcttggtatc ttgcttcaat
    24301 ttccgttaat gcataaatca ttcttttacc ttctttctat ataagagaaa catgctacat
    24361 ttgaaaagtc ataatcgatt caaatcagcg ctgtctcaca atttgaaact ttaacttcat
    24421 tcatctctat gacattatcg catattttga tcaatttgat acagtgtgga cctcttaacg
    24481 ttgagttttt aaaaatcgtt tagaatattt aagttgacat aatatgatta taataaagtt
    24541 attcgcctta catgttcaat tggtcgatga ctcgcatttt ctcatcacac agcaccatga
    24601 cgatacgtta ctaaaattca taataaaaag ggataagcgc caatgatgac cttatcccct
    24661 atcattaaaa gcctcaatta tgccattacg ctgaagctaa cttcttacgt aatacaagtt
    24721 gtagaatacc accatgacga tagtaatcaa tctcaacatt tgaatcgaaa cgtgcagtta
    24781 catcgaattc aactgttgta ccgtcttctt tcgtcgctgt cactttaact gtttgacctg
    24841 gttgcacatt ttcatcgaga tcaaccgcga ttgtttctgt tccatctaat cctaatgtat
    24901 ccgcagattc gccttcttta aattgtaaag gtaatacacc catcattact aagtttgaac
    24961 ggtgaatacg ttcgtaactt tgtgcaatta ctgttttcac gcctaaaaga tttgtacctt
    25021 tagctgccca gtcacgagaa gatcccatcc catagtcgtt acctgctaat acaactaaac
    25081 cagtaccgtc ttctttatat ttcattgcag catcgaaaat aggcatgacc tcaccagttg
    25141 gccagtaagt tgtataacca ccttctgtac caggcgcaag ttggttttta atacggatat
    25201 tcgcaaatgt accacgtacc atcacttcat ggttaccacg acgtgaacca taagagttga
    25261 aatcacgtgg cgatacacca ttcgatgtta aatattgacc tgctggcgta tctttaccaa
    25321 tcgcacccgc tggagaaata tggtccgttg tcactgagtc accaaattta cccatcacac
    25381 gcaagttaga taaaggttgg attgcgctag gttcttttga taaaccttgg aagaatgtag
    25441 gattttgaat gtatgttgat tgtggatcaa agtcatacaa tggttgatca gttgtatcga
    25501 tttggttcca taattcgttg ttgtcataca cgctcttata ttcttcttta aagagttcgg
    25561 gtgttacaac gctttccact gcatctgcaa cttcttgaat tgatggccaa atatctttta
    25621 agaacacatc attgccttgt tgatcttgac ctaatgcttc gctatgaaga tcgatatcta
    25681 cagtacctgc caatgcatac gcaacaacaa gtggtggtga cgcaagatag tttgctttca
    25741 ctaatggatg gatacgacct tcgaagttac ggttacctga taatacagaa gtcacaagta
    25801 aatcttcgtc agcaatcgct ttttcaattt cttctaataa tggacctgag ttaccgatac
    25861 aagttgtaca gccataacca actaagttaa agcctaattg atctaagtaa ctttgtaagc
    25921 ctgaatcacg taaataacct gttacgactt ttgaaccagg tgctaaagag gtcttcacat
    25981 aagatggtac ctctaaacct ttttcaactg cttttttcgc tagcaaacct gcacctaaca
    26041 tcacgtatgg gttcgatgta ttcgtacaag atgtaatcgc agcaatcgca atatcacctg
    26101 tcgtcatttc agttgttgag ccgtctttaa agttcactgt cgctgttttg tcgaattctg
    26161 ccttatctaa accatgacct tggttacctg ctggtgcagt gacagatttt tcgaattctt
    26221 ttttcatgtc gcttaagaaa attaaatctt gagggcgttt aggacccgat aaagacgctt
    26281 caacagttga taagtctaaa tctaccacat ctgtatagtt cggttcttca ttgacatcaa
    26341 agaacaagtg attttgtttt aaatatgtct ctactgtttc aatgtgctcg tcagaacgtc
    26401 ctgttaaacg taaatatttt aaagtttcat cgtcaactgg gaagaaacca caagttgcac
    26461 catattcagg cgccatattt gcgattgtcg cacggtcagc aagtggcaat ttgtctacac
    26521 caggaccgaa gaattcaacg aacttaccaa caacgccttt tttacgtaat aattcagtta
    26581 cacgtaaggc taagtctgtt gcattcgcac cttgaggtaa ttcgttcgtc aaacgtacac
    26641 caattacttc tggaattggg aaatatgaag gttgaccgag cataccggct tcagcttcga
    26701 taccaccaac accccaaccg agaacaccta aaccattgat catcgttgta tgagagtcag
    26761 tacctactaa tgtatcaggg aatgcaactt gctcaccatt ttcttcacgt acgtggacaa
    26821 cattcgctaa atactctaag ttaacttggt gaacgatacc tgttgctggc ggtacagcgt
    26881 tatagttatc aaacgctttt gtcgcccagt ttaaaaattg gtaacgctca tagttacgtt
    26941 caaattctaa tttcatgttg cgctctaacg attcaggatt cgcatagcta tctacttgta
    27001 cagagtggtc gataactaag tctactggta cttctggatt gattttagtt aagtccccac
    27061 ctacatcgtc catcgcttta cgtaatgaag ccaagtccac gacagctggc acgccagtaa
    27121 agtcttgcaa aataacacgt gacggcttaa atggcacttc acccttttca ttttctttac
    27181 cgaaagatga tagtgcttta atgtgttcat ctgtaataac aaaaccatcc tcttgacgta
    27241 atacagattc aagtaacaca cgaattgagt atggtaaacg actaatttgt gtataacctt
    27301 gttcttctaa agtgtttaaa tcgtaataag ttaagctctt accattcaat tggaatgact
    27361 tttttgcttg tgcttttaaa tttgaagcca ttgaatatc
//
LOCUS       DANHOL010000015        26277 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.015, whole genome shotgun sequence.
ACCESSION   DANHOL010000015 DANHOL010000000
VERSION     DANHOL010000015.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 26277)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 26277)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26277
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.015"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            191..961
                     /gene="sufC"
                     /locus_tag="PTC08_000425"
     CDS             191..961
                     /gene="sufC"
                     /locus_tag="PTC08_000425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly ATPase SufC"
                     /protein_id="HDK5681958.1"
                     /translation="MPSTLEIKDLHVSIDDKEILKGVNLTINTGEIHAIMGPNGTGKS
                     TLSSAIMGHPSYEVTQGEVLLDGVNVLELEVDERAKAGLFLAMQYPSEITGVTNADFM
                     RSAINAQREEGNEINLMQFIKKLDKQMDFLDMDKDMAQRYLNEGFSGGEKKRNEILQL
                     MMLQPKFAILDEIDSGLDIDALKVVSKGINEMRGEEFGSLIITHYQRLLNYITPDHVH
                     VMYNGIVVKSGGAELAKRLEEEGYEWVKEEYESVVANQ"
     gene            983..2290
                     /gene="sufD"
                     /locus_tag="PTC08_000426"
     CDS             983..2290
                     /gene="sufD"
                     /locus_tag="PTC08_000426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufD"
                     /protein_id="HDK5681959.1"
                     /translation="MTTETLNISEAQLVDYSQAHNEPSWMTELRKKALQQVESLEMPK
                     PDKTKLTKWDFDSFKQHETEGAVYYDLKELPKEIDRIINVENTENLVIQHNNTLAYTK
                     VNEKAQQDGVIIEHIQEALVNHSDLVEKYFMKDAVTVDEHRLTALHTALMNGGIFVYV
                     PKNVVVEHPIQYVVLHDDDNASFFNHVLLVTEESAEVTYVENYLSTASGEGNQLNIIS
                     EVVAGANSNISYGSVDFLDQGFTGHIIRRGVTAADASIRWSLGLMNEGDQIIDNTTNL
                     IGDRSSSELKSVVVGRGKQTINLTSRIVQYGKETDGYILKHGVMKENASSIFNGIGHI
                     KHGGSGSSANQESRVLMLSENARGDANPILLIDEDDVEAGHAASVGRVDPEQLYYLMS
                     RGISQSESERLVIHGFLDPVVRELPIEDVQRQLREVIELKVGK"
     gene            2319..3560
                     /locus_tag="PTC08_000427"
     CDS             2319..3560
                     /locus_tag="PTC08_000427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020359689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase"
                     /protein_id="HDK5681960.1"
                     /translation="MADTKLNVEAIIKDFPILEQQVNGKRLAYLDSTATSQKPKQVID
                     ALSDYYERYNSNVHRGVHTLGSLATDGYEGARETVRRFIHAKYFEEIIFTRGTTAAIN
                     MIAHSYGDANVGEGDEIVVTQMEHHANLVPWQQLAKRQGATLKFIPMAEDGTITLEAV
                     RETVSERTKIVAIAHVSNVLGTINDIKAIAEIAHEHGAIISVDGAQSVPHMKVDVQDL
                     NVDFYSFSGHKMLGPTGIGVLYGKREHLNQMEPTEFGGDMIDFVDLYDSTWTDLPTKF
                     EAGTPLIAQAIGLQAAIEYIESIGFDAIHEHEQALTTYAYEQMSQIEGIDIYGPSKDK
                     RAGIITFNLKDVHPHDVATALDTEGVAVRAGHHCAQPLMKWLNVSSTARASFYIYNTK
                     EDIDQLVEGLKQTKEFFSYEF"
     gene            3550..3999
                     /locus_tag="PTC08_000428"
     CDS             3550..3999
                     /locus_tag="PTC08_000428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SUF system NifU family Fe-S cluster assembly
                     protein"
                     /protein_id="HDK5681961.1"
                     /translation="MNFNNLDQLYRSVIMDHYKNPRNKGVIEDGTMTVDMNNPTCGDR
                     IRLTFDIAEGVIRDAKFEGEGCSISMSSASMMTEAIKGHSLKEAMQMSQEFTKMMLGE
                     DYEITEEMGDIEALQGVSQFPARIKCATLAWKALEKGTVEKEGKSEE"
     gene            4097..5494
                     /gene="sufB"
                     /locus_tag="PTC08_000429"
     CDS             4097..5494
                     /gene="sufB"
                     /locus_tag="PTC08_000429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019469760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufB"
                     /protein_id="HDK5681962.1"
                     /translation="MAKKAPDVGDYKYGFHDEDVSIFRSERGLTENIVREISRMKSEP
                     EWMLDFRLKSLKQFYKMPMPQWGGDLSELDFDDITYYVKPSERSERSWDEVPEEIKRT
                     FDKLGIPEAEQKYLAGVSAQYESEVVYHNMEKELEEKGIIFKDTDTALKENEELFKEY
                     FASVIPAADNKFAALNSAVWSGGSFIYVPKNVKLDTPLQAYFRINSENMGQFERTLII
                     ADEGASVNYVEGCTAPVYTTNSLHSAVVEIIVHKDAHVRYTTIQNWANNVYNLVTKRT
                     FVHENGNMEWVDGNLGSKLTMKYPACVLLGEGAKGSTLSIAFAGKGQVQDAGAKMIHK
                     APNTSSTIVSKSISKDGGKVVYRGIVHFGRKAKGARSNIECDTLILDNQSTSDTIPYN
                     EIFNDHISLEHEAKVSKVSEEQLFYLMSRGISEEEATEMIVMGFIEPFTKELPMEYAV
                     EMNRLIKFEMEGSIG"
     gene            5640..5924
                     /locus_tag="PTC08_000430"
     CDS             5640..5924
                     /locus_tag="PTC08_000430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease"
                     /protein_id="HDK5681963.1"
                     /translation="MKKLMMINTSHHQFGYDEKPTGLVLGELVHFYDAFNREGYTMDI
                     YINGSDTPIDSVSLNKLMLDRATKTYYEGAHFMALLKKCATYYSRKSKNV"
     gene            6214..7212
                     /locus_tag="PTC08_000431"
     CDS             6214..7212
                     /locus_tag="PTC08_000431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF21 domain-containing protein"
                     /protein_id="HDK5681964.1"
                     /translation="MIIAIILLIIVSCFFSGSETALTAANKVKLKSEADQNHQRSAKL
                     LKLLEKPSEFITTILIGNNIANILLPTLVTILAVDIGLSVGIASAVLTVVIIVFAEVI
                     PKSVAATFPDPIARFVFPVIRLCVIVFKPITVVLNALTDGINRILSRGQENQGMSKEE
                     VRTMVSIAGTEGAFNEMERNRIQGVMDFDRLKLNDVSNTPRVNVTSLSVEDTYDEVYD
                     IVMNHPYTRYPVYEGDIDNVVGVFHSKYLLAWSKTPDKAVTDFCSEPLFVYEHNRAEW
                     VLRKMTVTRKHMAIVLDEYGGTDAIVTHEDLIEEMLGMEIEDEMDREESDKLKQIR"
     gene            7292..8243
                     /locus_tag="PTC08_000432"
                     /pseudo
     CDS             7292..8243
                     /locus_tag="PTC08_000432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166997.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="nitronate monooxygenase"
     gene            complement(8276..8983)
                     /locus_tag="PTC08_000433"
     CDS             complement(8276..8983)
                     /locus_tag="PTC08_000433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HDK5681965.1"
                     /translation="MVKQISYGAHEDQHYDVYDNEQKTSQAWIVLIHGGYWRQKYSKA
                     MMDLMIDTLIEAGYAVVNVEYRRGTAHPWPIPSDDVAAAIQHFKTSTYQPRQLVGIGH
                     SVGGQLVLLNAELFDQIVALAPVTDVLYTLHQHLGQDAAAEYFDSSSTHTMRAASPLM
                     QAPIDVDTLIVHGFNDTSVHMDTTLSYVQENYKHGQYLTLYALPYLDHLDCINPGATH
                     LNMLLEWLAHRTAGDTV"
     gene            9107..9955
                     /locus_tag="PTC08_000434"
     CDS             9107..9955
                     /locus_tag="PTC08_000434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002464385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF72 domain-containing protein"
                     /protein_id="HDK5681966.1"
                     /translation="MIEIGLTGWGDHDTLYEDLQRKADKLQTYASHFPVVELDASYYA
                     IQPERNIVKWISETPQRFKFVVKIHQALTLHADYHDYADTIESLFHDFRRMLQPLVEA
                     DRLAMVLVQFPPWFDCNAKNIKYIRYVRAQLEQVPVCIEFRHQSWFQGEMKEHTLQFL
                     TDNQLIHSVCDEPQVGEGSVPLVNRITHQTALVRLHGRNKYGWTKKDMTDQEWRDVRY
                     LYNYNAEELQQLADKVTLLNQKAQHVYVVFNNNSGGHAAANAKYFQKLLGIDYEGLAP
                     QQLKLF"
     gene            9964..10794
                     /locus_tag="PTC08_000435"
     CDS             9964..10794
                     /locus_tag="PTC08_000435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002956137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HDK5681967.1"
                     /translation="MTLSIIILILVGFLSAIIGSLVGIGGGIIIVPTLIYFGVTLNIL
                     GGITPQTAIGTSSIILIATGLSSTVGYLKQKQVDVKNGIIFTIGIIPGALIGAYLSQY
                     LTLHSFNLYFGMFLILISVLLMVRHRIPPIKAFQQERYMKSFTDAHGEHYRYGVVPTI
                     AIIASFIIGLTAGLFGIGGGALMTPLMLLVFRFPPHIAVGTSMMMIFFSSVTGSIGHI
                     MLGHVLWGYSLILIISSWVGAQLGVRLNKTVKSDTVVLILRLVMLGLGIYLILQSFFN
                     "
     gene            10811..12130
                     /locus_tag="PTC08_000436"
     CDS             10811..12130
                     /locus_tag="PTC08_000436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional metallophosphatase/5'-nucleotidase"
                     /protein_id="HDK5681968.1"
                     /translation="MRLTIYHTNDIHSHLHAYSRITAYLTKARAQLTHPSRYVDIGDH
                     VDLSLPVTEGTLGKRNIELLNEAGCDVATIGNNEGMTISHEALNALYDEAQFKVTCTN
                     VLDESGQLPHNFLTSYIEQIEGVRVMYVAATAPFTPFYRALDWVVTDPLDAIQQEIAA
                     HKGEYDVLIVLSHVGIFFDEKLCETLPEIDVIFGAHTHHYFEDGEIQNGVLMAAAGKY
                     GQYLGEVTLEIENGKVIEKTAMLHPLEQLPEVETNFEAEGKALLNAPVVDTPITLQCA
                     MNHITKASYLLAESVHEFTEADCTIINAGLIVKGYTAQRLTEYDIHQMLPHPINVVRI
                     RLTGAELKEVLLKARAQEYMYDYAQGLGFRGDIFGGYILYEAGYIESSERYFVNGKEI
                     DDEATYILGTVDMYTFGRYFPTLKGGHIQYLMPEFLRDIFKEKLLTV"
     gene            12216..13133
                     /gene="lipA"
                     /locus_tag="PTC08_000437"
     CDS             12216..13133
                     /gene="lipA"
                     /locus_tag="PTC08_000437"
                     /EC_number="2.8.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl synthase"
                     /protein_id="HDK5681969.1"
                     /translation="MATKNEEILRKPDWLKIKLNTNENYTGLKKMMREKGLHTVCEEA
                     KCPNIHECWGERRTATFMILGDVCTRACRFCAVKTGLPNELDLGEPERVADSVKQMNL
                     KHVVITAVARDDLKDAGSNVYAETVRKVRELNPFTTIEILPSDMGGDYEALETLMAAR
                     PDILNHNIETVRRLTPRVRARATYDRTLEFLRRSKELQPDIPTKSSIMVGLGETIEEL
                     HETMDDLRANGVDILTIGQYLQPSRKHLKVQKYYTPLEFGKLRKVAMEKGFKHCQAGP
                     LVRSSYHADEQVNEAAKAKHRLGEEQLKL"
     gene            13152..13517
                     /locus_tag="PTC08_000438"
     CDS             13152..13517
                     /locus_tag="PTC08_000438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016424592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1027 domain-containing protein"
                     /protein_id="HDK5681970.1"
                     /translation="MIKVGNHYFELLTSYKDGFNEDDFIARYSEILDKYDFVVGDYGY
                     DQLRLKGFYHDSYKKADFNKRFSTIQDYLYEYCNFGCAYFVVRRLSKAEVEQQLGHDA
                     PIDATDKLKDVKIQPTIQD"
     gene            complement(14146..14412)
                     /locus_tag="PTC08_000439"
     CDS             complement(14146..14412)
                     /locus_tag="PTC08_000439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001831957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3055 domain-containing protein"
                     /protein_id="HDK5681971.1"
                     /translation="MIDMFLYDDMEPSQIRFVGFVGEHSRYDLVLIQTDRHYGKTLVL
                     NTQTNKFGIIGTDDLEEEGYIAYILGVSEEEGDEIRAYLHEVIQ"
     gene            14513..14944
                     /locus_tag="PTC08_000440"
     CDS             14513..14944
                     /locus_tag="PTC08_000440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002483824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF86 domain-containing protein"
                     /protein_id="HDK5681972.1"
                     /translation="MYFVDKTQLETKLKYLKQLTEDYETVKSNHYAFERVAQMLIESS
                     VDIGNMIIDAFILRDPGNYKDVIDILELEGAISKETQHALHETIDVRRQFVHYYDTLD
                     IAQLIPLFDQTVPFYEQFIEEVLQFLENENVPVTAFGKGAQ"
     gene            14948..15733
                     /locus_tag="PTC08_000441"
     CDS             14948..15733
                     /locus_tag="PTC08_000441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01457 family HAD-type hydrolase"
                     /protein_id="HDK5681973.1"
                     /translation="MKAYKGYLIDLDGTMYKGNQKIEGASEFIDYLNENQIPHLYVTN
                     NSTKAPVDVVEKLTTMAIDAKPQEVITSAMATADYIHGEKPGATVFIIGGSGLATALE
                     EAGLQLENGIDVDYVVVGLDEAITYEKLTTATLAVQNGATFISTNPDPSIPKEQGFLP
                     GNGSLTSVVTVSSKQQPIFIGKPETPIMEKSLEVLQLNKDEVAMIGDLYDTDIMAGIN
                     FGIDTIHVQTGVTSKEEVMQRDVPPTYSVKDLNELREQLIKGE"
     gene            15740..16705
                     /locus_tag="PTC08_000442"
     CDS             15740..16705
                     /locus_tag="PTC08_000442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycerate dehydrogenase"
                     /protein_id="HDK5681974.1"
                     /translation="MEKILVTRRIPQKFVERLETLGEVEMWDHELTPMPREKFIAAVQ
                     DKTAILVTLSEKIDATLFEAAPNLKIVANMAVGFDNIDLQAAAQHEVEISNTPHVLTE
                     TTAELGFALMMATSRRIVEAEKYVQDGKWESWGPYLLAGKDIYQSKVGIYGMGEIGRA
                     FARRLKGFHADILYHNRSRNIQAEQELGAFYTSFDKLIKESDFVICTAPSTPDTQNKF
                     NKEVFKNMRKDAIFINIGRGDLVVEEDLVEAIETGEIAGCGLDVVRDEPIRTDHPLLQ
                     YPNVIVTPHIGSATVLTRDQMIQTCLLNIKDVLEGQKPRNQVKMG"
     gene            complement(17290..17532)
                     /locus_tag="PTC08_000443"
     CDS             complement(17290..17532)
                     /locus_tag="PTC08_000443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NifU family protein"
                     /protein_id="HDK5681975.1"
                     /translation="MPTENATMYDQVAEVIEKLRPFLLRDGGDCELVDVEDGIVKLQL
                     LGACGTCPSSTITLKAGIERALVEEVPGVVEVEQVF"
     gene            17636..17965
                     /locus_tag="PTC08_000444"
     CDS             17636..17965
                     /locus_tag="PTC08_000444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YuzD family protein"
                     /protein_id="HDK5681976.1"
                     /translation="MEKVSVVVYGAEVVCASCVNAPSSENTYDWLKTLLPRKYPNIDF
                     EYTYIDIMGAQDNLSDHDIQFIEQIQEDELFYPLVTMNDEYVADGYIQLKPIKRFIER
                     NFDVSAE"
     gene            complement(18325..19389)
                     /locus_tag="PTC08_000445"
     CDS             complement(18325..19389)
                     /locus_tag="PTC08_000445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002483814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HDK5681977.1"
                     /translation="MKNLVLLGGGYGNMRIMSKILPDALPNDYNMTLIDRMPYHGLKT
                     EFYALAAGSKSDKEVRVNFPQHDRTHTVYGEITDIDLDNQIISVGQTKVDYDELVIGL
                     GCEDKYHNVPGAKEYTYSIQTLHDARKTYHDISDLPTNATVGIVGAGLSGIELASALR
                     ESRSDLKIYLYDRGERILNQFPEKLSNYVKKWFDQHDVTVVPNSDIVKVEPGILYNKE
                     TKNEHDLIVWTAGIQPVEIVRNLPVDLSRSNRVMVNQYHQIPTYPNVYVVGDCANLPH
                     APSAQLAEEQADQIAMVLTTLWKGKNLPEKMPEIKIQGFLGSLGEKKGFAYLMDTTVT
                     GRLASILKSGVLWLYKYHNG"
     gene            19680..19916
                     /locus_tag="PTC08_000446"
     CDS             19680..19916
                     /locus_tag="PTC08_000446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002483813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YuzB family protein"
                     /protein_id="HDK5681978.1"
                     /translation="MNPIVEFCISNMARGSEVVYQTLENDPGVDVLDYGCLQNCGICS
                     SGLYALVNGDIVEGDTPDDLLQNIYKHIEETWTF"
     gene            19929..20288
                     /locus_tag="PTC08_000447"
     CDS             19929..20288
                     /locus_tag="PTC08_000447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly accessory protein"
                     /protein_id="HDK5681979.1"
                     /translation="MAVVNLTEAAAYEVKDMLKQNDMADGYLKVKVNGGGCTGLTYGM
                     TAEAEPGENDEVLEFFGLKVLVDKEDAPILNGTTIDFKQSLMGGGFQIDNPNAIASCG
                     CGSSFRTAQAAGSPESC"
     gene            20709..21911
                     /locus_tag="PTC08_000448"
     CDS             20709..21911
                     /locus_tag="PTC08_000448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002455555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HDK5681980.1"
                     /translation="MAERKKVLVLGAGYAGLQTVTKLQKKLSEQDAQITLINKNDYHY
                     EATWLHEASAGTLNYEDVLYPIENVLKKHVDFVRAEVTKIDRNAKKVETTRGIFEYDI
                     LVVALGFESETFGIEGMKEHAFQIENVNTARQISRHLEDKFANYAASKTKDDKDLAIL
                     VGGAGFTGIEFLGELTDRIPELANKYGVEQSKVKVTCVEAAPKMLPMFSDELVSHAVS
                     YLEQRGVEFKVGTPIVAANDKGFVVKINDEEQQLEANTVIWAAGVRGSQLMEKSFEGV
                     KRGRIVTKQDLTIEGYDDIFVIGDVSAFIPEGGDRPLPTTAQIAMQQGEKTASNIVNI
                     LKGAPTEDFKYSDRGTVCSLGRHDGVGIVYGREITGKKAAFMKRVIDTRAIFKIGGLG
                     LAYKKGKF"
     gene            22176..23663
                     /locus_tag="PTC08_000449"
     CDS             22176..23663
                     /locus_tag="PTC08_000449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl aminopeptidase family protein"
                     /protein_id="HDK5681981.1"
                     /translation="MPSQQTETAAAIIAGVPEHLNQYFDVVKQDTAFFEALTELKAHH
                     LISSKVGEIASTGVTIENQMYRLITVGLGNLNQLKAQDYLKIWGKLFQYLQQGAIAKI
                     NLKVNTFLAKSLESETIFKLMGLQSEQAIYQFDDYKSDKKAPFHLKMVLDCDQVSDYT
                     DPIEVGQKLGRAVNRARDLSNTPPNIMTPAYLAETVEQYFKDTAVKVHIKDEHAIVQE
                     GFGLVQAVGKGSVHPPRMITLEYQGDPDHEDRVIALVGKGITYDSGGYSIKSKNGMPS
                     MKFDMSGAANVIGMVEAIRALKLKVNIVAVIAAAENMIANNAMKPDDVFTAVSGETVE
                     VPNTDAEGRLVLADATFYANQYKPEMIMDFATLTGAAVVALGEDKAAVFQHRVQPEVL
                     NQIFQASQIYEEPVFELPITETERKNIKASDVADLTNHVNAHGKALFAAAFIMHFSGQ
                     TPHLHFDIAGPATINKATHKGPKGPTGFMIPTIVTWLKNQYGMNQ"
     gene            23798..25114
                     /locus_tag="PTC08_000450"
     CDS             23798..25114
                     /locus_tag="PTC08_000450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter family protein"
                     /protein_id="HDK5681982.1"
                     /translation="MMNAVLIAVVIMIVLCLCRLNVVISLFISALIGGWIAGLPFDKT
                     ITTFTENIVDGAEVALSYALLGGFAALISYSGITDYLVRKVILSIRAEETKVSRIKVK
                     VLIIVSLLLLSIMSQNVIPVHIAFIPIVIPPLLSLFNELKIDRRLIAMIIGFGLCFPY
                     VLLPFGFGHIFHEIIQKGFEKAHHPIEFNMIWKAMLIPASGYIIGLIIAMFYYRKPRT
                     YRETAAQEEEVAVDLKPSVIIVTVVAILATFLVQMFSDSMIFGALAGVLVFFISGIYS
                     WRKLDDQFVDGIKIMAYIGVVILTANGFAGVMNATGDIEKLVTGLTTISGDNLLVSIV
                     LMYLIGLVVTLGIGSSFATIPILAALFIPFGEAMGMSTMALIALIGTASALGDSGSPA
                     SDSTLGPTAGLNVDGQHDHIRDTCIPNFVFYNIPLIIMGTIAALVL"
     gene            25138..25515
                     /locus_tag="PTC08_000451"
     CDS             25138..25515
                     /locus_tag="PTC08_000451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PaaI family thioesterase"
                     /protein_id="HDK5681983.1"
                     /translation="MTNLIELLEMKVEAQEDGYLKMSMPVTDKVKQPFGYLHGGASLA
                     LGETACSLGSAHLIDTSTHIPLGLEMNANHISSVREGVVYAEARILHQGSTTHVWDIH
                     IKNQAGQLISAMRGTIAIKPLKQ"
BASE COUNT         8499 a         4530 c         5551 g         7697 t
ORIGIN      
        1 caataacgtt tctaaaaaag tttgtaagaa tgattcttct acaaactgaa tatataacgc
       61 taaacggttt atcaatccct ttatttcagt tataataagc aactagatag atttgaaaac
      121 cttttgacgt tacattaaaa ttattataaa ctaaactatg gaatctaaca ttattttgga
      181 gggaatatta atgccatcaa cattagaaat taaagactta catgtgtcta ttgacgataa
      241 agagatttta aaaggtgtta acttgacaat caacacaggg gaaattcatg ccatcatggg
      301 gccaaatggt acaggtaaat caacattatc ttcagcaatt atgggccatc catcttatga
      361 agtgacacaa ggtgaagtgt tattagatgg agtaaatgtt ttagaattag aagttgatga
      421 acgtgccaaa gcaggtcttt tcttagctat gcaataccca tcagaaatta cgggtgtgac
      481 aaatgcggac tttatgcgtt cagcaattaa tgcgcaacgt gaagaaggta atgagattaa
      541 cttaatgcag ttcattaaaa agttagacaa acaaatggat ttcttagaca tggataaaga
      601 catggcgcaa cgttacttaa atgaaggctt ctctggtggt gagaaaaaac gtaacgaaat
      661 tttacaatta atgatgttac aacctaaatt cgctatttta gatgaaattg actctggtct
      721 tgatatcgac gcattaaaag ttgtatcaaa aggaatcaat gaaatgcgcg gagaggaatt
      781 tggttcatta attatcacgc actatcaacg tttattaaac tatattacac cagaccacgt
      841 gcacgtaatg tataacggca tcgtagtgaa atcaggtggt gctgaattag caaaacgcct
      901 tgaagaagaa ggttatgaat gggttaaaga agaatacgaa tcagtagtgg caaaccaata
      961 atcatcacag gaggaaataa ttatgacgac tgaaacatta aatatttctg aagcgcaact
     1021 tgttgattat tcacaagccc ataacgaacc ttcgtggatg actgaattaa gaaaaaaagc
     1081 acttcaacaa gtcgaatctt tagaaatgcc taaaccagat aaaacaaaat taacgaaatg
     1141 ggattttgac tcatttaaac agcatgaaac agaaggtgct gtatattacg atttaaaaga
     1201 attaccgaaa gaaatcgatc gtattattaa cgtcgaaaac actgaaaact tagtgattca
     1261 acacaataac acgctagcat atacaaaagt caatgaaaaa gcgcaacaag acggtgtgat
     1321 tattgaacac attcaagaag cgttagtgaa ccatagtgat ttggtagaaa aatacttcat
     1381 gaaagatgca gtgactgttg atgagcatcg tttgacagcg ttacacacgg cattaatgaa
     1441 cggaggtatt ttcgtctatg tgccgaaaaa tgttgttgtt gaacatccga ttcaatatgt
     1501 tgtgcttcat gacgatgaca atgcaagttt cttcaaccat gttttattag tgactgaaga
     1561 aagtgctgaa gtgacatacg tagaaaacta tttatcaaca gcgagtggcg aaggaaacca
     1621 attgaatatt atttcggaag tggttgctgg cgcgaactct aacatttcat atggttctgt
     1681 tgacttttta gatcaaggtt ttacaggtca tatcattcgt cgtggtgtga ctgcagcaga
     1741 tgcctctatt cgttggtcat taggtttaat gaatgaaggc gaccaaatta tcgataacac
     1801 aacgaaccta attggtgacc gttcatcttc tgagcttaaa tcagttgtgg ttggacgtgg
     1861 taaacaaaca attaacttaa catctcgaat tgtgcaatat ggtaaagaaa cagacggcta
     1921 tatcttgaag catggtgtga tgaaagagaa tgcttcttca atctttaatg gtattggtca
     1981 tattaagcac ggcggttcag gttcatcagc taaccaagaa tcacgtgtgc tcatgctttc
     2041 tgaaaatgca cgtggtgatg cgaacccaat tctattaatc gatgaagacg atgtagaagc
     2101 aggacacgca gcatcagtag gtcgtgtaga tccagaacaa ctttattacc ttatgagtcg
     2161 tggtatttcg caatcagaat cagaacgtct tgttattcac ggtttcttag atccagttgt
     2221 acgtgaatta ccaattgaag atgttcaacg tcaattacgt gaagtgattg agctgaaagt
     2281 aggcaaataa tacaattcaa gaaaggtctg tgattgtagt ggccgataca aaactaaatg
     2341 tagaagcaat tattaaagac tttcccattt tggaacaaca agtcaatgga aaacgtcttg
     2401 catatttgga ttcaacagca acaagtcaaa aaccaaagca agtgattgac gccttgtcag
     2461 attactacga gcgttacaat tcgaacgtac atcgtggtgt gcatacactc ggttcgcttg
     2521 cgacagatgg ttacgaaggg gcgcgcgaaa cagtccgtcg ttttatccat gcgaaatatt
     2581 ttgaagagat tatttttact cgtggtacaa cagcagcaat taatatgatt gcgcatagtt
     2641 atggagatgc caatgtcggt gaaggtgacg aaattgttgt cacacaaatg gagcaccatg
     2701 cgaacctcgt cccttggcaa caacttgcga aacgtcaagg tgcgacatta aaatttatcc
     2761 caatggcaga agatggtacg attacgttag aagctgtgcg tgagacagtt tcagaacgta
     2821 cgaaaattgt agcaatcgcg catgtttcta acgtattagg aacaattaat gatattaaag
     2881 ctattgcaga aattgcgcat gaacatggtg cgattatttc agttgatggt gcacagtctg
     2941 ttccacatat gaaagtagat gttcaagatt tgaatgttga tttttatagt tttagtggcc
     3001 ataaaatgct tggaccaaca ggaataggtg tcctttatgg aaaacgagaa cacttgaatc
     3061 aaatggagcc tactgagttc ggtggcgata tgattgattt tgtggacttg tatgacagta
     3121 cttggacaga cttaccgact aagtttgaag caggcacacc tttaatagct caagctattg
     3181 gcttacaagc agctattgaa tacattgagt ccattggctt tgatgcgatt catgaacatg
     3241 aacaagcttt aacaacgtat gcctatgaac aaatgtcaca aattgaaggc atcgacattt
     3301 acgggccgtc taaagacaaa cgtgcaggta ttattacgtt taatcttaaa gatgtacatc
     3361 cacatgacgt tgcgactgct ttggatactg aaggtgttgc agtgcgtgca ggtcaccatt
     3421 gtgcacaacc attaatgaaa tggttaaacg tttcttcaac agcgcgtgca agtttttata
     3481 tctataatac aaaagaagat atcgatcaac ttgtcgaagg attgaaacaa acgaaggagt
     3541 ttttctcata tgaattttaa taatctagac caattatatc gttcggtgat tatggatcat
     3601 tataaaaacc ctcgcaacaa aggtgtcatt gaagacggga cgatgactgt cgatatgaac
     3661 aatcccactt gtggtgaccg tatccgctta acatttgata ttgcagaggg tgtcattcgt
     3721 gatgcgaaat ttgaaggtga aggttgttcg atttcgatgt cgagcgcgtc gatgatgact
     3781 gaagcgatta aagggcatag tttaaaagaa gccatgcaaa tgagccaaga atttacgaaa
     3841 atgatgctcg gtgaagatta tgaaatcact gaggaaatgg gagatattga agcattacaa
     3901 ggtgtttctc aattcccagc ccgtattaaa tgtgccacac ttgcatggaa agcacttgaa
     3961 aagggtactg tagaaaaaga aggcaaaagt gaagaatagt cgtttgtgag aactttttac
     4021 acaacgatta cgatagagtt gaaaatgagt tgtcataagg cactcatgaa tgaattagaa
     4081 ataggagtga tgattgatgg ctaaaaaagc acctgatgta ggcgattata aatatggctt
     4141 ccatgatgaa gacgtatcga tttttagatc agaacgtggc ttaacagaaa atattgtacg
     4201 tgaaatttca agaatgaaaa gcgaacctga atggatgttg gactttcgtt taaaatcgtt
     4261 aaaacagttt tataaaatgc caatgccaca atggggcggc gacttatctg aattagactt
     4321 tgacgatatt acgtattatg ttaaaccgtc agagcgttca gagcgttctt gggatgaagt
     4381 gcctgaagaa attaaacgta ctttcgataa attaggtatt ccagaagctg agcaaaaata
     4441 tttagcaggt gtatctgcac aatatgaatc agaagtggtt taccataaca tggaaaaaga
     4501 acttgaagaa aaaggtatta tcttcaaaga cacagataca gcattaaaag aaaacgaaga
     4561 acttttcaaa gaatattttg catctgtcat tccagcagct gacaacaagt tcgcagcatt
     4621 gaactcagca gtatggtcag gtggttcatt catttacgta ccgaaaaatg tgaaattgga
     4681 cacaccatta caagcgtatt tccgtattaa ctcagaaaac atgggtcaat tcgaacgtac
     4741 attaatcatt gctgacgaag gtgcatctgt aaactatgtt gaaggttgta cagcaccagt
     4801 gtacacaacg aactcattgc actcggcagt tgttgaaatc attgtacaca aagatgcgca
     4861 cgttcgttat acaacgattc aaaactgggc aaacaacgtg tataaccttg tgacaaagcg
     4921 tacattcgtt catgaaaatg gaaacatgga atgggttgac ggtaacttag gttcgaaatt
     4981 aacaatgaaa tatccagcat gtgtgttact tggtgaaggt gcaaaaggta gcacattatc
     5041 tatcgctttt gcgggtaaag gccaagttca agatgcaggt gctaaaatga ttcataaagc
     5101 accaaacaca tcttcaacaa tcgtttcaaa atctatttct aaagacggcg gtaaagtagt
     5161 ataccgcggt attgtacact ttggacgtaa agcgaagggc gcacgttcaa acatcgaatg
     5221 tgatacgcta attttagata accaatcgac atccgataca attccttaca acgaaatttt
     5281 caatgaccac atttcattag aacacgaagc gaaagtttct aaagtatctg aagagcaatt
     5341 gttctacctc atgtctcgtg gtatttctga agaagaagcg actgagatga tcgtaatggg
     5401 cttcattgaa ccatttacaa aagaattgcc aatggaatat gctgttgaaa tgaaccgtct
     5461 catcaagttc gagatggaag gtagtatcgg ataagctgag taggtatggt tgagcgattt
     5521 tgattgtcga aaactacctt tttgatacct ctttattttg attatgttca aaataaagag
     5581 gtatttattt tacacaagtt tttttatgtc gctaccttaa ttcagaaagg atagactata
     5641 tgaaaaagct tatgatgatc aacacaagtc accatcagtt tgggtatgac gagaagccga
     5701 ctgggttagt gttaggcgaa cttgttcatt tttatgacgc tttcaatcgt gaaggttaca
     5761 ccatggacat atatattaat gggagtgaca cgcctatcga ttcagtcagt ttaaacaaat
     5821 tgatgttaga tcgtgccact aaaacatatt atgaaggtgc acattttatg gcgttattaa
     5881 aaaaatgcgc aacctattac tcacgcaaat ccaaaaatgt atgaaaatca tgcaggtatt
     5941 atgtgtgatt catttgcaat ttagctatcg ttcagacaca ataatactat gattgccggt
     6001 atgtattttc ggtgtataag gtttgagatg atagggaagt agaaatgatg tgcatgatat
     6061 agtaggagat agggtgagac attaagcttt ctcatcatct tctttctcat gtttttattg
     6121 cgcattgtta attataaaac agttgaaaaa tgaaaatggg tttaacatat tgactatttt
     6181 cttatgctag agattaagag ggggaactgc ttaatgatca ttgcgatcat tttactcatc
     6241 attgtctctt gtttcttttc ggggagtgaa acggcactta ccgcagcaaa caaggtcaaa
     6301 ttaaaatcag aagcggacca gaatcaccaa agatccgcga aattattgaa gttattagaa
     6361 aaaccgagtg aattcattac cactatttta attggtaata acattgcgaa tattttgtta
     6421 ccgacattag tcacgatttt agcagtagat ataggcctaa gtgtcggtat tgcgtccgcg
     6481 gtgttaacgg tcgtcattat cgtatttgct gaagtgattc cgaaatccgt agccgcaaca
     6541 tttccagatc caattgcacg ttttgtattt ccagtgatac gcctttgtgt catcgtattt
     6601 aaaccgataa cggtcgtgtt gaatgcttta acagatggca ttaatcgtat attgtcacgt
     6661 ggacaagaaa atcaaggtat gtccaaagaa gaagtgcgta cgatggtgtc gattgcaggt
     6721 acggaaggcg catttaacga aatggaacgg aatcgtattc aaggggttat ggattttgat
     6781 cgtttgaagt tgaatgatgt cagcaatact ccgcgtgtga atgtgacatc actatctgta
     6841 gaggatacgt atgatgaagt gtatgacatt gtgatgaacc atccatacac gcgttatcca
     6901 gtatatgaag gcgatatcga taatgtggta ggtgtgtttc attctaaata tttgttagct
     6961 tggagtaaaa cacccgataa agcagtgaca gatttctgtt cagagccgtt gtttgtttat
     7021 gaacataacc gtgctgaatg ggtattgaga aagatgacgg tcacacgtaa acatatggct
     7081 attgtacttg atgaatatgg tggtacagat gcgattgtga cacatgaaga tttgattgaa
     7141 gagatgttag gtatggagat tgaagatgag atggatcgcg aagaaagcga taaattgaaa
     7201 caaatccgtt aaagtgacat aaaaatatag aaaatggctg ggaacatttc attgtgaccc
     7261 agcttttttt aaaatttaag gtgacttgac gatgtggtgt aaaacaaagg tgacagaaca
     7321 atgtcaaatt gactatccaa ttatacatgt aggaatggct gagagaatga caccagaact
     7381 cgtcgcaacg cggtcagtga attaggtgga cttgcgacga ttggtacatg ttatatgacc
     7441 tcggcagtac tcgaataaga aattttaaaa gtgaaagcac gcacatccaa gtctttttca
     7501 gtaaatttat atgtgccaga gtcattttca tataaagatg aagctgtggc ggcgatgaac
     7561 gactttttaa caccatatcg cccagcatta aatcttgaac aaccaacaat tggcgatacc
     7621 gacccttcca tatgtgacat attgattgac attgtcattc aacaacacgt ttcgatttgc
     7681 agttcacttt tggaattcct gatgaaaaaa caatcaaccg tttgaaagca gccgatatcg
     7741 tattaattgg tagtgtgaca accggtgaag aagtcaaagc agtagaagca gctagttgtg
     7801 gcacaaggaa gtgaagcagg cggtcaccgt acaacatttg atgatcatca agagacaacg
     7861 ccattaattg ggacaatggt atgcgcccct taagtggcga caaccttttt aacaatacat
     7921 gaaagcaccg caaaatcagt gtataaacaa gtgattttaa cagtgtggca acagatgcga
     7981 ttctgacaca tgaaattatt agaaaacctg caagagcgct tcacaatgca tggattcagc
     8041 attttcgcga aaaaggtacg gtcattttac cttagccaat acaaaatgat taaacgtaac
     8101 atatttgagc tgcggcaggt atggtaggcg atgcaaactg gatgcatatg tggagtggtc
     8161 aaggtggccg tctcgcgcaa aatcacgatg tggctaattt tttcaaccaa ttgattcaaa
     8221 atgcacagtc acaagctgaa taattcaaca tgtaactgtg catcatatgt gtccgctata
     8281 ccgtatcgcc tgcagtacgg tgtgcgagcc attccaataa catattgaga tgtgtcgcgc
     8341 caggattaat acaatccaaa tggtctaaat aaggtaaggc atagagtgtt aaatattgac
     8401 catgcttgta gttttcttgg acataggaga gcgtggtatc catatgtacg gaagtgtcgt
     8461 taaacccgtg tacaatgagt gtatcgacat caataggtgc ttgcattaaa ggtgaggctg
     8521 cacgcatcgt atgggttgag ctagagtcaa aatattctgc tgcagcgtct tgtcctaaat
     8581 gttgatgcaa cgtgtaaagg acatctgtca caggtgcgag tgcgacgatt tgatcgaata
     8641 actctgcgtt taataaaacg agttgtccac ctacagaatg tccgatgcca accagttgtc
     8701 gtggttgata ggtagaagtt ttaaaatgtt gaattgctgc tgccacatcg tcgctcggta
     8761 tcggccatgg atgtgctgta ccgcgacgat attccacatt gactactgca tagccagctt
     8821 caatcaatgt gtcaatcatt aaatccatca tcgctttact atatttttgt ctccaatagc
     8881 cgccatgaat gagaacaatc catgcttgtg acgttttctg ttcattgtca taaacgtcat
     8941 aatgttggtc ttcatgtgcc ccgtaactga tttgttttac cattattaaa aactcctttt
     9001 tgcacgtctt taatcccatt ataccctatg ctgctttcca acaaatgagg ggcaccatca
     9061 cgtacatcat cgtggtggat atgataaaat gaaggcggtg ataaaaatga tagaaattgg
     9121 tctaacaggg tggggcgatc atgacacctt gtatgaagat ttacagcgca aagcagataa
     9181 attacaaact tatgcaagtc attttccagt cgttgaatta gatgcgtcat attatgccat
     9241 ccaacctgaa cgtaatattg tgaaatggat tagtgaaacg ccacaacgct ttaaattcgt
     9301 cgtcaaaatt catcaagcac tgacgttaca tgcagattac cacgactatg cagacacgat
     9361 tgaaagttta tttcatgatt ttcgacggat gttgcaacct ttagttgaag cagatcgttt
     9421 agcgatggtc ctcgttcagt ttccgccttg gtttgattgt aatgctaaaa atattaaata
     9481 tattcgctac gtccgcgcac aactcgaaca agtaccggta tgtatcgaat ttcgtcatca
     9541 atcttggttc caaggcgaaa tgaaagagca tacgctacaa tttttaacag acaatcaact
     9601 tattcattcg gtatgtgatg aacctcaagt aggagaaggc agtgtcccat tagtgaaccg
     9661 cattacacat caaacggcac tcgttcgact tcatggacga aacaagtatg gttggacgaa
     9721 aaaggatatg acggaccaag aatggcggga tgtgcggtat ctttataatt ataacgctga
     9781 agaattacaa caattagcag ataaagtgac attattaaat caaaaagcgc aacatgtata
     9841 tgtcgtgttt aacaacaact caggcggtca tgctgcagca aatgccaagt attttcaaaa
     9901 acttttaggc attgattatg aaggtttagc accacaacaa cttaaattgt tttagaggag
     9961 ggcgtgacgt tgagtattat cattcttatt ctcgtaggat ttttatccgc tattatcggt
    10021 tctttagttg gaattggtgg tggcattatc attgtaccga cattaattta ttttggtgtc
    10081 acgttaaata ttttaggggg cattacaccg caaactgcaa ttggtacatc atccattatt
    10141 ttaattgcga cagggttgtc ctcaacggta ggttatttaa aacaaaagca agtggatgta
    10201 aaaaatggca tcatattcac gattggtatc attccagggg cgttgattgg tgcttattta
    10261 agccaatatt taacgctaca ttcatttaat ttatactttg ggatgtttct aattctcatc
    10321 tctgtattat taatggtccg tcatcgtata ccaccgatta aagccttcca acaagaacgc
    10381 tatatgaagt catttacaga tgcacacggt gaacattatc gttatggtgt tgttccaact
    10441 attgcgatta ttgcgtcatt tattattggt ttaacagcag gcttatttgg cattggcggt
    10501 ggtgcattga tgacaccatt aatgttgctt gtattccgtt tcccacccca tattgcagta
    10561 gggacaagta tgatgatgat tttcttctca agtgtgactg gttccatcgg tcatattatg
    10621 ttaggtcatg tgttatgggg gtacagtttg attttgatca tttcaagttg ggtcggcgca
    10681 caattaggtg tgagattaaa taaaacggtc aaatccgata ccgtagtttt aattttacga
    10741 ttagtcatgc taggattagg gatttatctc attttacaat cattctttaa ctaaaaagtg
    10801 aggcgagatt atgcgtttaa cgatttatca tacgaatgat attcacagtc atttacatgc
    10861 ttattcacgt atcacagcat atttaacaaa ggcacgtgca caattaacgc atccttctcg
    10921 ttatgtcgat atcggcgatc atgtcgattt atccttacct gtaacagaag gcacgttagg
    10981 gaaacgcaat atagaactcc tgaatgaagc gggatgtgat gtagcgacaa tcggaaacaa
    11041 tgagggcatg acgatttcac atgaagcgtt gaatgcattg tacgatgagg cacagtttaa
    11101 agtgacgtgt acgaatgtat tagatgaatc aggtcaatta ccacacaact ttttgacgtc
    11161 ttatattgaa caaattgaag gcgtgcgtgt gatgtatgtc gcagcaacag cgccattcac
    11221 cccattttat cgcgcactag attgggtggt gactgatcct cttgatgcga tacaacaaga
    11281 aatcgccgcg cataagggtg aatatgacgt tttaattgta ttgagtcatg ttggtatctt
    11341 ttttgatgag aaactttgcg aaacactacc agaaattgat gttatctttg gtgcccatac
    11401 ccatcattac tttgaagacg gtgaaattca aaatggtgta ttaatggcgg cagcaggaaa
    11461 gtacggtcaa tatttagggg aagtgacgct agagatagaa aacggtaaag tcattgagaa
    11521 gactgcgatg ttacatccac ttgagcaatt gcctgaagtt gagacgaact ttgaagcgga
    11581 agggaaagca ctcctcaacg caccagtcgt ggatacaccg atcactttgc aatgtgcgat
    11641 gaatcatatt acaaaagcga gttatttgtt agctgaaagc gtgcacgaat ttaccgaagc
    11701 agactgtaca attattaatg cgggtttgat tgtcaaaggc tacacggcac aacgattaac
    11761 cgaatatgat atccatcaaa tgttgcccca tccaatcaat gtcgtacgta ttcgtttaac
    11821 aggggctgaa ttgaaagaag tgctattgaa agcccgtgct caagaatata tgtacgatta
    11881 cgcccaaggt ctaggctttc gtggggatat ctttggcggt tatattttat atgaagcggg
    11941 ctacattgaa tcgagtgaac gttactttgt gaatgggaaa gagattgatg atgaagcgac
    12001 ttatatttta gggacggtgg atatgtacac gtttggacgc tattttccaa ctttaaaagg
    12061 cggtcacatc caatacttaa tgcctgagtt tttgagagac atatttaaag aaaagttgtt
    12121 aacggtttaa tttgcatgaa caggagattt taatttcttg taaagttcgt tataatagag
    12181 taagacctat aaattatggg aggttttccg ctgttatggc tacaaaaaat gaagaaattt
    12241 tacgcaaacc agattggctt aaaataaagt taaacacaaa cgagaactac acaggcttaa
    12301 agaaaatgat gcgcgaaaaa ggactacata ctgtatgtga ggaagcaaaa tgtccaaaca
    12361 tccacgagtg ctggggtgag cgtcgtacgg ctacatttat gatcttgggt gatgtttgta
    12421 cacgtgcatg tcgtttctgt gcagttaaaa caggtttacc gaatgagttg gacttaggtg
    12481 agccagaacg tgtcgctgat tcagtgaaac aaatgaactt gaaacacgtc gttatcactg
    12541 cagtagcgcg tgacgacttg aaagatgccg gttcaaatgt atacgctgaa acagtacgca
    12601 aagttcgcga gcttaaccca ttcacaacaa ttgaaatttt accttctgac atgggtggcg
    12661 actatgaagc attagaaaca ttaatggctg cacgtccgga cattttaaac cacaatatcg
    12721 aaacagtacg tcgtttaaca ccaagagtgc gtgcgcgtgc cacttacgat cgtacattag
    12781 aatttttacg tcgttctaaa gagttgcaac cagacatccc aacaaaatca agtattatgg
    12841 tgggattagg tgaaacaatc gaagaacttc acgaaacgat ggatgattta cgtgcgaacg
    12901 gtgtagacat tttaacaatc ggtcaatatt tacaaccttc tcgtaaacat ttaaaagtac
    12961 aaaaatacta cacaccatta gaatttggta aattgcgtaa agttgcgatg gaaaaaggct
    13021 tcaaacattg tcaagcgggt ccattagtgc gtagttctta ccatgcagat gaacaagtaa
    13081 atgaagcagc taaagcgaaa catcgacttg gtgaagaaca acttaaatta taagaaccag
    13141 gtgatgaacg tatgattaaa gtaggaaacc attattttga attattaacg tcatataaag
    13201 atgggttcaa tgaagatgat tttattgcga gatattctga aattctagat aaatatgact
    13261 ttgtcgttgg ggactatggt tacgatcaat tgagattaaa gggcttctat catgattcct
    13321 ataaaaaagc agattttaac aaacgctttt caacgataca agattatctc tatgaatatt
    13381 gtaattttgg atgtgcctac tttgtcgtac gtcgactttc aaaagcagaa gtcgaacaac
    13441 aattaggaca tgatgcgcct attgatgcaa cagataaatt gaaggatgtc aaaatacaac
    13501 cgacaataca agattaaatc attcgaatga tatatgagca gcatgtgcat agtgaagtat
    13561 agtgaacttc atcgtgtgcg tgctgttttt ttatttggga tattaagtat tgactgtgat
    13621 cagttaagaa ggaaacagag gaaagcgctg aaaaaataag cattgcaaga cgtttgatga
    13681 cgcggaaatc ttgatccagt ctctctacag aaaatgattg aaatgatgaa gtgagaatat
    13741 tggtgaaaaa tggcatgaag aagaaaagta attgtagaac cttgtagcat tagatgtcct
    13801 gcgccataat agttaaaaac cgaggaagac tcccgaggga agatgtaaaa aaacaataac
    13861 gtcatttaac tttaaaagtg gctagtgttc aacgcagtag atgtctgatt gctcaaggtt
    13921 tgcacttttg agaagcctag ccaagcttgc gggggcagta tgacgaaatc tttgttgtac
    13981 atgaaatttc tgtcctgctc cccaaatcca tttcggctac atcccaatat acactttaat
    14041 caagttgaat tgcgttgaag ggatagcgcc taggaaagcg tagcactgtt cggcaatcga
    14101 acgaacaaaa aataacctat gtacaacaaa gatttaaaat taccactact gaatcacttc
    14161 atgcaaataa gccctaatct catcgccctc ttcttcactc acgcccaaaa tataagcaat
    14221 ataaccttct tcctctaaat catccgtccc aataatccca aacttattcg tctgcgtatt
    14281 taacactaac gtcttaccat aatgacgatc cgtttgaatc aacaccaaat cataacggct
    14341 atgctcacca acaaagccaa caaaacgaat ttgagaaggt tccatatcat catataaaaa
    14401 catatctatc atgtgtgtaa ctcctttaaa atcatgttaa ggcaagtata gcgataaatg
    14461 aagttgcatg caaaattatg atatgataga ggggaatagg ggtgaccata aagtgtattt
    14521 tgttgataaa acacaattag aaacgaaatt aaaatattta aaacaactca ctgaagatta
    14581 tgagacggta aaatcaaatc attacgcatt tgaacgtgtc gcacaaatgt tgattgagtc
    14641 ctcagtcgat atcggcaaca tgattatcga tgccttcatt ttgagagacc caggcaatta
    14701 taaagacgtc attgatattt tagagcttga gggcgccatt tctaaagaga cccaacacgc
    14761 tttacacgaa acgatagatg tgcgccgtca gttcgtgcac tattacgata cattagatat
    14821 agcgcagtta atcccattat ttgatcaaac agtcccattt tatgagcagt ttattgaaga
    14881 agttttacag tttttagaaa atgaaaatgt ccctgtaaca gcatttggaa aaggagcgca
    14941 ataagcaatg aaagcataca aaggctattt aatcgacttg gatggaacga tgtataaagg
    15001 taatcaaaaa attgaaggtg catctgaatt tattgattac ttaaatgaaa atcaaattcc
    15061 acatttatat gtgacgaata actcaacgaa agcaccagtc gatgtagtgg aaaaactaac
    15121 gacgatggcc attgacgcaa agccacaaga agtcattacg tcagcaatgg caacagcaga
    15181 ttatatccat ggtgaaaaac caggtgccac agtttttata attgggggct ctggattagc
    15241 gacagcatta gaagaggcgg gcttacaact tgaaaatggc atcgatgtcg attacgtcgt
    15301 tgtaggtttg gacgaagcga ttacttatga aaaactaacg acagcaacgt tagccgttca
    15361 aaacggtgcg acatttattt ctaccaatcc ggacccatcg attcctaaag aacaaggctt
    15421 tttaccaggc aacggttctt tgacaagcgt tgtaacggta tcatctaaac aacagccgat
    15481 ttttattggt aaacctgaaa cacctatcat ggaaaaatcg ttagaagtgc tacaactgaa
    15541 caaagatgaa gtggcgatga ttggtgattt atacgacacg gatattatgg caggaattaa
    15601 cttcggcatc gatacgattc atgttcaaac aggtgtaacg tcgaaagaag aagtcatgca
    15661 acgtgacgta ccgccgactt atagtgtgaa agatttgaat gagttacgtg aacaattaat
    15721 caaaggcgag tgatgagaga tggaaaaaat tttagtaacg cgacgtattc cacagaaatt
    15781 tgtagaacga cttgaaactt taggtgaagt tgaaatgtgg gatcatgaat tgacacctat
    15841 gccacgtgag aaatttatag cagcagtcca agataaaaca gcgatacttg tcacgttaag
    15901 tgaaaaaatc gatgccactt tatttgaagc ggcgccgaat ttgaaaattg tcgcaaatat
    15961 ggctgtaggt tttgacaata ttgatttaca agcagcagcg caacatgaag tcgagatttc
    16021 aaacacacca catgtgctaa ctgagacaac agctgaatta ggctttgcgc ttatgatggc
    16081 aacgtcccga cgtatcgtag aagcagaaaa atatgttcaa gatggcaaat gggaaagctg
    16141 gggcccttat ttgttagccg gtaaagatat ttatcaatct aaagttggta tttatggaat
    16201 gggtgagatc ggtcgtgcct ttgcgcgtcg tttaaaagga ttccacgctg acattttgta
    16261 tcacaaccgt tcgcgaaata ttcaagccga acaagaatta ggtgcgtttt acacatcatt
    16321 tgataaattg attaaagaaa gtgattttgt catttgtacg gcaccgtcta cacctgacac
    16381 gcaaaataaa tttaataaag aagtattcaa gaatatgcgt aaggatgcga ttttcattaa
    16441 tatcggtcgt ggggatttag ttgttgaaga agatctcgtt gaagcgattg aaacaggaga
    16501 aattgccggc tgtggtttag atgtcgtgcg cgatgaacca attcgtacag atcatccgtt
    16561 actgcagtat ccgaacgtca ttgtaacacc acatatcggt agtgcgactg tactcacacg
    16621 tgaccaaatg atccaaacgt gtttattaaa tattaaggac gttttagaag gtcaaaaacc
    16681 gcgcaatcaa gttaaaatgg gttagcattt caacataaaa aagagctggg attattgtct
    16741 tttcccagcc tttatctatt cattaaagat tataaaacag cagaaaaaag aggatgaatt
    16801 ggatgaaaaa ttgatgctat tgtttttctg gattttataa acttgctctt agttttactt
    16861 tatttaatgt aagattgcct agaaagctga aactcgtgag gaattgacta catactgcta
    16921 actgtcactt ttttacatta aaagtggtta ccgtttaacg cagtagctgt ctgacttctc
    16981 aatgcgcatg cttttgagaa gtctagtcag ccttgcgggg caatacgacg acatctttgt
    17041 gacacaaacg ctttctttac tactctcaaa atccaattcg gtatctatct tgtttacatt
    17101 ataatcaagt cgaattgagt tgaaggttca gtccctggga acgcgtagcc atgagtgcaa
    17161 tcataaacac aaatggtagg atatgagggc gagttaaacc agaatgctgc accaatagca
    17221 tcaaaaattt ttttgtgtct catcttcttt ttttctcata tgaaatacga cattgaatta
    17281 aacatgttgt tagaatactt gttcgacctc gacaacacct ggtacttctt ctactaatgc
    17341 acgttcaatc ccagctttta aagtaattgt actacttggg catgtgccac aagcaccgag
    17401 taattgaagt tttacaatac catcttccac gtcgacaagt tcacagtcgc caccgtcacg
    17461 taataagaac gggcgtaatt tctcaatgac ttctgcaact tgatcgtaca ttgtagcatt
    17521 ttcagttggc atgcgtaatg cctcctttca aatttaaatg gttcatttta tccttatctt
    17581 tttattataa tagaatcagt acaaaaaatc tatcgaatca attaggggga tggctatgga
    17641 aaaagtaagt gtcgttgtgt atggtgcaga agtcgtttgt gcaagttgcg tgaatgcacc
    17701 aagttcggaa aacacgtatg attggttgaa aacattatta ccacgaaaat atccaaacat
    17761 cgattttgaa tacacatata ttgatattat gggggcacaa gataatttgt cagatcatga
    17821 tatacagttt attgaacaaa ttcaagaaga tgaattgttt tacccattag tgacgatgaa
    17881 cgatgaatat gtggcagatg gttatattca attgaaacca attaaacgtt ttattgaacg
    17941 caactttgat gtatccgcag aataggagaa gtagagaaca atagcggggt tagggcatag
    18001 aaggttttta gccttaattc tttcgtaagt ttcatgattc attaatgatt ttaaaacagt
    18061 cggaaaatga gggtaaatgg gatagaaaaa ttgatgctat tgttttttga tttcataaac
    18121 ttgttctcag tttcacttta tttggtatca gattttattt gatgcacttt tgagttgatt
    18181 tccgtaacat tagggcatga ttgtagcacc tctaatataa aaatgccaaa atgggcacgc
    18241 attccgagga tgagcctata ggaacataag ctcattttgg catttataaa attagcgttt
    18301 aaatgaacag taaaagttca atttctatcc gttatgatat ttatacaacc aaagtacgcc
    18361 tgatttcaag atggaagcta aacgtccagt taccgttgta tccatcaaat aagcaaaacc
    18421 tttcttttca cctaaagaac ctagaaaacc ttgaatctta atttcaggca ttttttcagg
    18481 taaatttttc cctttccaca atgtcgttaa caccatcgcg atttggtcag cttgttcttc
    18541 agcgagttgt gcgctcgggg catgtggcaa gttcgcacag tctccaacaa catatacatt
    18601 aggatacgtt gggatttggt gatattggtt caccatcacg cgattactac gacttaagtc
    18661 aacaggcaga tttcgcacga tttcgacagg ttgaattcct gcagtccaga cgatgaggtc
    18721 gtgttcattt ttcgtttctt tattataaag tatacctggt tcaactttga cgatatccga
    18781 attaggcacg actgtgacat cgtgttgatc gaaccatttt ttaacataat tacttaattt
    18841 ttcagggaat tgatttaaaa tacgctcacc gcgatcgtat aagtagattt tcaaatcgct
    18901 acgactttcg cgtaatgcac tcgcgagttc gataccactt aaaccagcac cgacaatacc
    18961 gacagttgca ttggtaggaa gatcagaaat gtcgtggtaa gttttacgag cgtcatgtaa
    19021 agtttggatg ctgtacgtat attctttagc acctgggaca ttgtggtatt tatcttcgca
    19081 gcctagaccg atcactagtt catcgtaatc gacttttgtt tgacctacag aaatgatttg
    19141 attgtctaaa tcgatatctg taatttctcc gtatactgtg tgggttctgt catgttgtgg
    19201 gaaattaaca cgtacctctt tatcagattt agagccagca gctaatgcat aaaattctgt
    19261 tttaagccca tggtaaggca tccggtcgat taacgtcata ttataatcat ttggaagcgc
    19321 gtctggtaaa attttagaca taatgcgcat gttaccataa ccgccgccta gcaatactaa
    19381 attcttcatt ttgatacccc tctttagtga tgtatattcc gatatctatt tcagcaatgg
    19441 actccacaca aaacgaaata ggcaccgttc aagttattga tcatagctct aaatttaatt
    19501 atatcccttt ttcgaaagcc acacaaacaa aggaaaacac gtgctttcaa aatttttcac
    19561 aaaccaattt tgtcaatcca atcgatgtgt atgatgaagc gttaacatga gccgtctcat
    19621 agatgtccgt tctaaaattt gttatactga taacattaaa acatagaaga gggtgtaaaa
    19681 tgaatccgat tgtcgagttt tgtatttcta atatggcgag aggttcagaa gttgtttacc
    19741 aaactttaga aaatgatccg ggagtggatg ttctagatta tggttgcctt caaaactgtg
    19801 ggatttgttc gtcgggactc tacgcacttg tgaatggtga tatagttgaa ggtgatacgc
    19861 cagacgattt attgcaaaat atttataagc atatagaaga aacgtggact ttttaaggag
    19921 gctaaaacat ggcagtagtc aatttgacag aagcagcagc atatgaagtg aaagatatgt
    19981 tgaagcaaaa tgatatggca gatggttatt taaaagtgaa agtaaacggt gggggttgta
    20041 caggtttaac gtacggcatg actgctgaag ctgaaccagg tgaaaatgat gaagtacttg
    20101 aatttttcgg tttaaaagta cttgtagata aagaagatgc gccgatttta aatggcacaa
    20161 ctattgactt taaacaatct ttaatgggtg gcggttttca aatcgataat ccgaacgcga
    20221 ttgcatcatg tggttgtggt agctcattta gaacagcgca ggcggcaggt tcaccagaaa
    20281 gttgttaatc gagtgaatgg tggacaacat cctttttaat gcgatttatg tcatgcttaa
    20341 aaagactgaa atgtaacata tgaaagcaac tacagagtga tattgaatat ccgagactct
    20401 tcgccatatc gaattgtctc ggttttcttc gtatgacacg gatgcattca aaatgagatc
    20461 gagtaggtgg catagcatag gctaagcgta cttacaatga tttgacgcgt cacaatattt
    20521 ttttaagatg agcgacaaaa ataatgaaaa tctgttgaaa acttataggg tattaacttg
    20581 aattcaataa taaaaaacta tacactaatg aatgacaata ttttacaatt ttgtgtactg
    20641 taaaaattga gagggtatac agtattattg gaatttgatt atatttacga aagaataggt
    20701 gaatgcaaat ggcagaacgt aaaaaagtac ttgttttagg tgctggttat gcgggcttac
    20761 aaactgttac aaaacttcaa aaaaaattat cagaacaaga cgcacagatt actttaatca
    20821 acaaaaacga ctatcactat gaagcaactt ggttacatga agcttcagca ggtacattaa
    20881 attatgagga cgtcttatat ccaatcgaaa acgtgttgaa aaaacatgtt gatttcgttc
    20941 gtgcggaagt aacaaaaatc gaccgcaatg cgaaaaaagt tgaaacaaca cgcggtattt
    21001 tcgaatatga tattttagtt gttgctttag gttttgaatc agaaacattt ggcattgaag
    21061 gtatgaaaga acacgctttc caaatcgaaa atgtcaatac tgcgcgtcaa atctctcgcc
    21121 atcttgaaga taaatttgca aattatgctg catcaaaaac aaaagacgac aaagacttag
    21181 cgattcttgt cggcggagca ggattcactg gaattgaatt tttaggtgaa ttaacagacc
    21241 gtattcctga acttgctaac aaatacggtg tagaacaaag taaagtaaaa gttacttgtg
    21301 tagaagctgc gccaaaaatg ttaccaatgt tttctgatga gcttgttagt catgcagtga
    21361 gctatttaga acaacgcggt gtagagttca aagtcggtac acctattgtt gcagcaaatg
    21421 acaaaggttt cgttgttaaa attaatgatg aagagcaaca attagaagcg aacactgtca
    21481 tttgggctgc aggtgttcgt ggtagccaat taatggaaaa atcattcgaa ggcgttaaac
    21541 gtggacgtat tgtaacgaaa caagatttaa ctatcgaggg ttacgatgac atcttcgtca
    21601 ttggtgacgt ctctgcattc atccctgaag gtggcgatcg tccattacca acaacagctc
    21661 aaatcgcaat gcaacaaggt gaaaaaacag cttctaacat tgtgaatatc ttaaaaggtg
    21721 caccaacaga agacttcaaa tatagcgatc gtggtacagt atgttcatta ggtcgtcatg
    21781 acggtgtggg tatcgtttat ggccgcgaaa ttactggtaa aaaagcagca ttcatgaaac
    21841 gtgtcattga tacacgtgcc atctttaaaa ttggtggttt aggtttagct tacaaaaaag
    21901 gtaaatttta agcattaatc aaccctgctt tgattcgacg atattaaaat caggagtctc
    21961 actgagtaag gttttgaaat aacgcattga tgatgaaacg gtatgacttt tatcagtcca
    22021 atgcttgatt agagaaaaag attttaagca tacggtatac atatacagtg taacaaaatg
    22081 tatatgataa ctgcagggag tggaaaaggg atctaaatgt catatttagg ttgctcttct
    22141 actccttttt tacatattaa aaaggagtga aagtgatgcc ttcacagcaa acagaaacag
    22201 cagctgcgat cattgcaggt gttccagaac atttaaacca atatttcgat gtcgtgaaac
    22261 aggatacggc atttttcgaa gcattgacgg aattaaaagc acatcatctc atcagttcaa
    22321 aagtaggtga aattgcgtca actggagtca caatagaaaa tcaaatgtat cgtttaatta
    22381 cggtaggtct cggtaatttg aaccaattga aagcacaaga ttatttgaaa atatggggca
    22441 aattattcca atatttacaa caaggtgcga ttgctaaaat caatttaaaa gtgaatacat
    22501 ttttagccaa atcactagaa tcagaaacga tatttaaatt aatgggtctt caaagtgaac
    22561 aggcgattta tcaatttgat gattataaat ctgataaaaa agcaccgttc catcttaaaa
    22621 tggtattgga ttgtgaccaa gtgtcagact atacagatcc aattgaagtg ggacaaaagt
    22681 taggtcgtgc cgttaaccgc gcgcgtgatt tgagtaatac accaccaaat attatgacgc
    22741 ctgcttattt agctgaaacg gttgaacagt attttaaaga tacagcagtt aaagtccaca
    22801 ttaaagatga acacgcgatt gtacaagaag gattcggatt agtccaagct gtcggcaaag
    22861 ggtctgtaca tcctccgcgt atgattacat tagaatatca aggagatccg gaccatgaag
    22921 atcgagtgat cgctttagtc ggtaaaggga ttacgtacga ttcaggtggt tattccatca
    22981 aatctaaaaa tggcatgccg tcaatgaaat ttgatatgag tggtgcggct aacgtcattg
    23041 gtatggttga agcaatccga gcattgaaac tcaaagtgaa tattgtagcc gttattgcgg
    23101 cagcagaaaa tatgattgcg aataatgcga tgaagccgga tgatgtattt acagcggtca
    23161 gtggtgaaac cgtcgaagtg ccgaataccg atgcggaagg gcgtttagtg ttggctgacg
    23221 cgacgtttta tgcgaaccaa tacaagcccg agatgattat ggacttcgca acattgacag
    23281 gagcggcagt tgttgcatta ggtgaagata aagcagccgt gttccaacat cgtgtccaac
    23341 cagaagtgtt gaatcaaatt tttcaagctt ctcaaattta tgaagaacct gtgtttgagt
    23401 tgccgattac tgagacagaa cgtaaaaata ttaaagcatc agatgtggca gatttaacga
    23461 accatgtcaa tgcgcacggt aaagctttat ttgcggcagc atttattatg catttcagtg
    23521 gtcaaacacc acatcttcat tttgatattg cgggaccagc aacaatcaat aaagcgacac
    23581 ataaaggtcc aaaaggtcca acaggtttta tgattcctac aattgtcaca tggttgaaaa
    23641 atcaatacgg tatgaatcag taaagaaagg gggagtgtgc catgaatttg tgccactccc
    23701 gctttaattt tgatgtagta agcattgacg aatgacgtga caactgttac cattataccc
    23761 atacgcttta gctcgataat gaattaaagg agatagaata atgaatgctg tgttaatagc
    23821 ggtcgtcatc atgatagtgc tctgtttatg tcggctcaac gtcgtcatta gtttatttat
    23881 tagtgcactc atcggcggat ggattgcagg tctgccattt gataaaacga ttacaacttt
    23941 tacagaaaat attgtggatg gggcagaagt agcgctcagt tatgctttac tcggtggctt
    24001 tgctgcactc atttcataca gtgggattac agattatctc gtacgtaaag tgattttatc
    24061 tattcgtgca gaagagacaa aagtttcgag aattaaagtg aaagtactca ttatcgtgag
    24121 cttactatta ctgagtatca tgagtcaaaa cgtgattcca gtccatattg cttttattcc
    24181 aattgtgatt ccccctttat taagcttatt taatgaattg aaaatcgatc gccgcttaat
    24241 tgcgatgatt attggttttg gtctatgttt tccgtatgtc ttattaccat ttggcttcgg
    24301 tcacattttc catgagatca ttcaaaaagg atttgaaaag gcacaccatc cgattgaatt
    24361 taatatgatc tggaaagcaa tgctcatacc agcatcaggt tatattatcg gacttattat
    24421 cgccatgttt tattatcgta aaccgagaac gtatcgggaa acggcagcgc aagaggaaga
    24481 ggtggctgtg gatttaaaac catctgtcat tatcgttacg gttgttgcga ttttagctac
    24541 atttctcgtt caaatgttct cagattcaat gattttcggt gcattggcag gggtgcttgt
    24601 ctttttcatt tctggtattt attcttggcg caaactcgac gaccaatttg tggatggcat
    24661 taaaattatg gcttacatcg gcgtcgtgat tttaactgcg aatggttttg caggtgtgat
    24721 gaatgcgaca ggtgatattg aaaagttagt gaccggctta actacgattt caggagataa
    24781 tttattggta agtattgtac tcatgtatct catcggttta gtcgtgactt taggaattgg
    24841 ttcttcattt gcgacgatcc caattttagc cgcgctcttt ataccgtttg gtgaagcaat
    24901 gggaatgagt acgatggcat taatcgcatt aatcggtaca gcgagtgcac ttggggattc
    24961 aggttctcca gcgagcgatt cgacattagg accaacagca ggactcaatg tagacggtca
    25021 gcacgatcat attcgtgata cgtgtattcc gaactttgtc ttttataata taccactcat
    25081 tattatggga acgattgcgg cactcgtatt ataataatag aaaaaggagt gaccctcatg
    25141 acaaacttaa tcgagttatt agaaatgaaa gtcgaagcac aggaggacgg ctatttgaaa
    25201 atgtcgatgc ctgtgacgga taaagtcaaa cagccatttg gttatttaca tggcggagca
    25261 tcactcgcat taggggaaac agcatgttcg ctaggctcgg cccatttaat agacacttcg
    25321 acgcatattc ctctagggtt agaaatgaat gcgaaccata tcagttcagt ccgtgaaggt
    25381 gtcgtttatg cagaagcacg cattttgcat caaggtagta caacgcatgt gtgggacatt
    25441 catattaaaa atcaagcagg gcagttgatt tcagctatgc gcggtacgat tgcgattaaa
    25501 ccattgaagc agtaatttga gagaagggca gacatagaaa attttgaagc tattgatgta
    25561 gtattttgtt taacttgcca tccatttgat ttgtggtttt tgattgccat catggcttcg
    25621 cattccgagg ggctagtcct tcaactcact aatgctggat taaactgcta catttgttga
    25681 ggcgttagtg gattttggga gcagtacaga accctcatgt gtcacaaaga tttcgtcgta
    25741 ctgcttccgc aaggcgtgct ggacttctca aaagtgtata cattgagaag tcagaccgct
    25801 aatgcgataa acagtagcca ctattaaagt gtagaggtca ctgtaagcag tatgcatgcc
    25861 ttcccacagg cgtctcagcc ttctgaacaa ccttatagta aacattttga gggcatgttt
    25921 atgaaatgaa aacaattcat agcatcccat tttttaagtc cgattcatcc ctattattaa
    25981 cggttgaatc atcattaatt gataaaagtt catgaaaggg tagaaactgg gaaaccttaa
    26041 tgcgccatcc ccttttccta tgataaaaga aaataataat aatcaaagtt tttatgcctc
    26101 atccttctca cgttttctct ttttgaacaa agataccaca acattacgta agagtagtaa
    26161 aactaaaaag tcaataggaa cttgtactgc ggttgtactg aatcattgca agaagacgca
    26221 aactaaaaag agcaataacc tcaaaatcaa ataagtgaaa ataagcttga gtattct
//
LOCUS       DANHOL010000016        26164 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.016, whole genome shotgun sequence.
ACCESSION   DANHOL010000016 DANHOL010000000
VERSION     DANHOL010000016.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 26164)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 26164)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26164
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.016"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(<1..194)
                     /locus_tag="PTC08_000452"
     CDS             complement(<1..194)
                     /locus_tag="PTC08_000452"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5681984.1"
                     /translation="METKEEYIVNSFDKLINQINEIGGEIQRERGTLFEKLVLAYLKN
                     EPTYRNLYKNVWLLKDVPSE"
     gene            complement(436..834)
                     /gene="rpsI"
                     /locus_tag="PTC08_000453"
     CDS             complement(436..834)
                     /gene="rpsI"
                     /locus_tag="PTC08_000453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HDK5681985.1"
                     /translation="MTLAQVEYRGTGRRKNSVARVRLVPGEGNIKVNDRDVREYLPFE
                     SLILDLNQPFDVTETKGNYDVLVNVHGGGFTGQAQAIRHGIARALLEADPEYRGSLKR
                     AGLLTRDPRMKERKKPGLKKARRSPQFSKR"
     gene            complement(848..1285)
                     /gene="rplM"
                     /locus_tag="PTC08_000454"
     CDS             complement(848..1285)
                     /gene="rplM"
                     /locus_tag="PTC08_000454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019468667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HDK5681986.1"
                     /translation="MRQTFMANESNIERKWYVVDAEGQTLGRLSSEVAAILRGKNKVT
                     YTPHVDTGDYVIIINASKIELTGNKENDKIYYRHSNHPGGLKSITAGELKRTNPERLL
                     ETSIKGMLPSSRLGEKQGKKLFVYGGAEHPHAAQQPENYELRG"
     gene            complement(1494..2297)
                     /gene="truA"
                     /locus_tag="PTC08_000455"
     CDS             complement(1494..2297)
                     /gene="truA"
                     /locus_tag="PTC08_000455"
                     /EC_number="5.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(38-40) synthase TruA"
                     /protein_id="HDK5681987.1"
                     /translation="MQRVLVKISYNGAQFLGFQIQNQGRTIQGYFEKILKRMHQQHVR
                     IHPSSRTDRGVHAKAQYFHFDTHLNITPERWQHAMNNALPDDIYVHDVSFIDQDFHCR
                     YDCVGKRYRYSIYQAEHRNPFWSQLKTFEPKALDIEAMQRAAQYFVGTHNFTTFCSQK
                     TEVESKERTIYESRIEQTADGIDFVITGSGFLYNMVRVIMAYLLEVGKGKRSADDVPN
                     LLAQQDRNLVPHTAPAEGLYLEKIYLAPEQLTADFGDHIQIHSKKSTQI"
     gene            complement(2313..3116)
                     /locus_tag="PTC08_000456"
     CDS             complement(2313..3116)
                     /locus_tag="PTC08_000456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor transporter transmembrane
                     protein EcfT"
                     /protein_id="HDK5681988.1"
                     /translation="MKDKLIIGRFLPLDTVIHRLDPRAKLIFVFLFIIIIFFSHAPLS
                     YLWLALILLTVTKLARIPLWFLIKGLLPVFFFLILTFMMHLFLTKGGTRLIEWGFITI
                     DSNGIREGILIMLRLGFIMIVSTILTLTTSPLNLTDAFDRLFKPLKYIKIPVAALSMM
                     MSIALRFIPTLMEELDKIILSQKSRGSDISSGSLAARIKAFIPLLIPLFISAFQRAEE
                     LAIAMEVRGYDANAERTSYRILKWQLKDTLLIISLVPIAAVSLWLGHTF"
     gene            complement(3106..3972)
                     /locus_tag="PTC08_000457"
     CDS             complement(3106..3972)
                     /locus_tag="PTC08_000457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor transporter ATPase"
                     /protein_id="HDK5681989.1"
                     /translation="MIKFEEVSYTYQKNTPYEYQALNQISTEFLPGRYYAIIGKTGSG
                     KSTLIQHFNGLVKPTRGKVQVLDVTVNRKTKDKHLKSIRQRIGMVFQFPESQLFEETV
                     EKEVLFGPRNYGLDIEEARDKAMTLLGELGFDAEKVMQQSPFLLSGGQMRKIALAAIL
                     AMDPDILILDEPTAGLDPRSKAQVMALFKKLQLEEGKTIILVTHDMNDVAEFADEIKI
                     MQGGTLIESTTPYDFFQRPDDVNALHLCLPDIVRLQRDVEAKLGVQFDKLALTEASFV
                     AIYEEWRQRHEG"
     gene            complement(3969..4778)
                     /locus_tag="PTC08_000458"
     CDS             complement(3969..4778)
                     /locus_tag="PTC08_000458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor transporter ATPase"
                     /protein_id="HDK5681990.1"
                     /translation="MEHEHLIEFDHVSFQYHEDQPKVLNDIQFKVNKGEWLSIVGHNG
                     SGKSTLAKLLTGIEQDYQGDIRINGSSIKGVDRSAFEHHIGIVFQNPENQFVGSTVSY
                     DVAFGLENKGLSYNEMHDIVPLVLKDVDMYDKQHHEPTALSGGQKQRVAIASVLALEP
                     QLIILDEATAMLDPEGKRDILAMVKALNRHKGVTVIAITHDLSEVVSSDRVIVMNRGE
                     VFLEGTVEKIFEKGEALVEIGLDLPFEMRMAQKLNLSQSFITYEGLLERLT"
     gene            complement(5259..5627)
                     /gene="rplQ"
                     /locus_tag="PTC08_000459"
     CDS             complement(5259..5627)
                     /gene="rplQ"
                     /locus_tag="PTC08_000459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002450507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L17"
                     /protein_id="HDK5681991.1"
                     /translation="MGYRKLGRTSDQRKAMLRDLATSLIVSERIETTEARAKELRSVV
                     EKLITLGKKGDLASRRNAAKTLRNVQILNEDETTQTALQKLFGEIAERYQERQGGYTR
                     ILKVAPRQGDGALKVIIELV"
     gene            complement(5644..6588)
                     /locus_tag="PTC08_000460"
     CDS             complement(5644..6588)
                     /locus_tag="PTC08_000460"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011302606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="HDK5681992.1"
                     /translation="MIEIEKPRIETIEVSDDAKFGKFVVEPLERGYGTTLGNSLRRIL
                     LSSLPGAAVKYIEIEGVLHEFSAIDHVVEDVSTIVMNIKKLALKIYSEEDKTLEIDIK
                     EEGEVTAKDIMHDSDVEILNPDLKIATVSKGGHLKLRLVANTGRGYALADQNNSSDLP
                     IGVIPVDSLYSPVERVNYTVENTRVGQSSDFDKLTLDVWTDGSITPQESVSLAAKIMT
                     EHLNIFVGLTDEAQNAEIMIEKEEDQKEKVLEMSIEELDLSVRSYNCLKRAGINSVQE
                     LADKSEADMMKVRNLGRKSLEEVKYKLEDLGLGLRKED"
     gene            complement(6664..7053)
                     /gene="rpsK"
                     /locus_tag="PTC08_000461"
     CDS             complement(6664..7053)
                     /gene="rpsK"
                     /locus_tag="PTC08_000461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016998822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="HDK5681993.1"
                     /translation="MARKQVSRKRRVKKNIENGVAHIRSTFNNTIVTITDEFGNALSW
                     SSAGALGFKGSKKSTPFAAQMASETASKAAMEHGLKSVEVTVKGPGPGRESAIRALQS
                     AGLEVTAIKDVTPVPHNGCRPPKRRRV"
     gene            complement(7078..7443)
                     /gene="rpsM"
                     /locus_tag="PTC08_000462"
     CDS             complement(7078..7443)
                     /gene="rpsM"
                     /locus_tag="PTC08_000462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012748902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HDK5681994.1"
                     /translation="MARIAGIDIPRDKRVVISLTYIYGIGKTSAQKILSEANVSEDTR
                     VKDLTDDELGRIREVVDGYKVEGDLRRETNLNIKRLMEISSYRGIRHRRGLPVNGQKT
                     KNNARTRKGPVKTVANKKK"
     gene            complement(7467..7580)
                     /gene="rpmJ"
                     /locus_tag="PTC08_000463"
     CDS             complement(7467..7580)
                     /gene="rpmJ"
                     /locus_tag="PTC08_000463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003720928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L36"
                     /protein_id="HDK5681995.1"
                     /translation="MKVRPSVKPICEKCKVIKRKGKVMVICENPKHKQKQG"
     gene            complement(7612..7830)
                     /gene="infA"
                     /locus_tag="PTC08_000464"
     CDS             complement(7612..7830)
                     /gene="infA"
                     /locus_tag="PTC08_000464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017185218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="HDK5681996.1"
                     /translation="MAKQDVIELEGTVLDTLPNAMFKVELENGHEILAHVSGKIRMNY
                     IRILPGDKVTVEMSPYDLTRGRITYRYK"
     gene            complement(7997..8650)
                     /locus_tag="PTC08_000465"
     CDS             complement(7997..8650)
                     /locus_tag="PTC08_000465"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HDK5681997.1"
                     /translation="MNIILMGLPGAGKGTQASEIIKKYPIPHISTGDMFRKAIKDETE
                     LGKEAKSYMDRGELVPDEVTVGIVKERISEDDAKKGFLLDGFPRTIEQAEALNSILEE
                     LGRTIDAVVNIEVPEEELMNRLTGRRICETCGTTYHLVFNPPKVEGICDIDGGKLYQR
                     EDDNPETVANRLEVNVKQSKPILEFYNQKGLLKNIDGSKHIDEVTSDVIEILESLKS"
     gene            complement(8668..9960)
                     /gene="secY"
                     /locus_tag="PTC08_000466"
     CDS             complement(8668..9960)
                     /gene="secY"
                     /locus_tag="PTC08_000466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HDK5681998.1"
                     /translation="MFHTLVNFFKTKEVRNKILFTLAMLVIFKIGTYIPAPGVNPAAF
                     DNRQGSQGVTDLLNTFGGGALKNFSIFAMGIMPYITASIVMQLLQMDIVPKFTEWAKQ
                     GETGRKKLNNFTRYFTIVLAFIQSIGMSFQFNNYLDGALIKEQNVWSYLLIAIVLTSG
                     TAFLMWLGEQITQYGVGNGISIIIFAGILSTLPSGLMQFYQQEFIGQDDVTFAWLKVA
                     GLVVGMILLTVGAVYVLQAIRKIPIQYAKKQSHMRLGSQATYLPLKVNSAGVIPVIFS
                     MAFFLLPRTLSLFFPDADWAQKLGNYADPSHNMGMVVYVVLIIAFTYFYAFVQVNPEK
                     MAENLKKQGSYVPGIRPGEQTKKYITKVLYRLTFVGSIFLAVIAILPIIATKFMNLPQ
                     AIQLGGTSLLIVIGVAIETMKSLEAQVNEKEYKGFGRR"
     gene            complement(9960..10400)
                     /gene="rplO"
                     /locus_tag="PTC08_000467"
     CDS             complement(9960..10400)
                     /gene="rplO"
                     /locus_tag="PTC08_000467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15"
                     /protein_id="HDK5681999.1"
                     /translation="MKLHELKPSEGSRKLRNRVGRGAGTGNGKTSGRGQKGQKARSGG
                     GVRPGFEGGQLPLFRRIPKRGFTNINRKEYAIVNLDQLNQFEDGTEVTPELLIETGVV
                     KNEKAGIKVLGNGSLEKKLTVKAHKFSASAKAAIEAKGGAQEVI"
     gene            complement(10417..10596)
                     /gene="rpmD"
                     /locus_tag="PTC08_000468"
     CDS             complement(10417..10596)
                     /gene="rpmD"
                     /locus_tag="PTC08_000468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001096577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L30"
                     /protein_id="HDK5682000.1"
                     /translation="MAKLQITLTKSVIGRPETQRKTVKALGLGKVNSSVTVEDNAAIR
                     GQINKVSHLVSVEEK"
     gene            complement(10613..11113)
                     /gene="rpsE"
                     /locus_tag="PTC08_000469"
     CDS             complement(10613..11113)
                     /gene="rpsE"
                     /locus_tag="PTC08_000469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016426364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HDK5682001.1"
                     /translation="MARREEEVKEFEERVVTINRVAKVVKGGRRFRFTALVVVGDKNG
                     RVGFGTGKAQEVPEAIKKAVEAAKKDLITVTRVDGTTPHTITGRFGSGSVLMKPAAPG
                     TGVIAGGPVRAVLELAGITDILSKSLGSNTPINMVRATINGLKNLKNAEDVARLRGKT
                     VEELYN"
     gene            complement(11136..11495)
                     /gene="rplR"
                     /locus_tag="PTC08_000470"
     CDS             complement(11136..11495)
                     /gene="rplR"
                     /locus_tag="PTC08_000470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011275136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="HDK5682002.1"
                     /translation="MISKIDKNKVRLKRHARVRTKLSGTSEKPRLNVYRSNKHIYAQI
                     IDDTKGVTLVQASTKDSEVDASTTKVEMASKVGEVIAKKANEKGIEAVVFDRGGYLFH
                     GRVKALADAARENGLQF"
     gene            complement(11527..12063)
                     /gene="rplF"
                     /locus_tag="PTC08_000471"
     CDS             complement(11527..12063)
                     /gene="rplF"
                     /locus_tag="PTC08_000471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001829740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HDK5682003.1"
                     /translation="MSRVGKKIIEIPSDVTVTIEGNTVSVKGPKGELSQTLNEEMTYK
                     QDENTLEVVRPSDSKEHRTIHGTTRALINNMVQGVSKGYEKTLELIGVGYRAQVQGSK
                     LVLNVGYSHPVEFEAAEGITFSVEKNTTVKVEGIDKELVGATASKIRDVRPPEPYKGK
                     GIRYQGEYVRRKEGKTGK"
     gene            complement(12092..12490)
                     /gene="rpsH"
                     /locus_tag="PTC08_000472"
     CDS             complement(12092..12490)
                     /gene="rpsH"
                     /locus_tag="PTC08_000472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000178880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8"
                     /protein_id="HDK5682004.1"
                     /translation="MTLSDPIADMLTRVRNANMVRHEKLELPASNIKKEIAEILKNEG
                     FIKNVEYIEDDKQGVIRLFLKYGSNNERVITGLKRISKPGLRVYAKANEVPKVLNGLG
                     IALVSTSEGVITDKEARKRNVGGEVLAYIW"
     gene            complement(12521..12706)
                     /locus_tag="PTC08_000473"
     CDS             complement(12521..12706)
                     /locus_tag="PTC08_000473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011245027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type Z 30S ribosomal protein S14"
                     /protein_id="HDK5682005.1"
                     /translation="MAKKSMVVKQQRKQKFQVREYTRCDRCGRPHSVYRKFKLCRICF
                     RELAYKGQIPGVRKASW"
     gene            complement(12728..13267)
                     /gene="rplE"
                     /locus_tag="PTC08_000474"
     CDS             complement(12728..13267)
                     /gene="rplE"
                     /locus_tag="PTC08_000474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011275133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L5"
                     /protein_id="HDK5682006.1"
                     /translation="MNRLKEKFNSEVTQNLVKKFNYSSVMEVPRIDKIVVNMGVGDAV
                     QNSKVLDNAVEELTAITGQKPLITKAKKSVATFRLREGMPIGAKVTLRGERMYEFLDK
                     LISVSLPRVRDFRGVSKNAFDGRGNYTLGVKEQLIFPEIDYDKVSKVRGMDIVIVTTA
                     NTDEEARELLTQFGMPFQK"
     gene            complement(13293..13607)
                     /gene="rplX"
                     /locus_tag="PTC08_000475"
     CDS             complement(13293..13607)
                     /gene="rplX"
                     /locus_tag="PTC08_000475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24"
                     /protein_id="HDK5682007.1"
                     /translation="MHIKKGDNVIVIAGKDKGKTGKVVATQPKKDRVVVEGVNIVKKH
                     QKPTQMNPEGGILETEAAIHVSNVQILDPKTNEPTRVGYKFVDGKKVRIAKKSGEEIK
                     SN"
     gene            complement(13651..14019)
                     /gene="rplN"
                     /locus_tag="PTC08_000476"
     CDS             complement(13651..14019)
                     /gene="rplN"
                     /locus_tag="PTC08_000476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012727667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L14"
                     /protein_id="HDK5682008.1"
                     /translation="MIQQETRLKVADNSGAREVLTIKVLGGSGRKTANIGDVIVATVK
                     NATPGGVVKKGDVVKAVVVRTKSGVRRKDGSYIKFDENACVIIRDDKGPRGTRIFGPV
                     ARELREGNFMKIVSLAPEVL"
     gene            complement(14048..14311)
                     /gene="rpsQ"
                     /locus_tag="PTC08_000477"
     CDS             complement(14048..14311)
                     /gene="rpsQ"
                     /locus_tag="PTC08_000477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011983253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
                     /protein_id="HDK5682009.1"
                     /translation="MSERNDRKVYVGKVVSDKMDKTVTVLVETYKTHKLYGKRVKYSK
                     KYKAHDENNSAKFGDIVKIQETRPLSATKRFRLVEIVEESVII"
     gene            complement(14337..14546)
                     /gene="rpmC"
                     /locus_tag="PTC08_000478"
     CDS             complement(14337..14546)
                     /gene="rpmC"
                     /locus_tag="PTC08_000478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002509269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HDK5682010.1"
                     /translation="MKAKEIRDLTTSEIEEQIKSSKEELFNLRFQLATGQLEETARIK
                     TVRKTIARLKTVARERELEQGKANQ"
     gene            complement(14536..14970)
                     /gene="rplP"
                     /locus_tag="PTC08_000479"
     CDS             complement(14536..14970)
                     /gene="rplP"
                     /locus_tag="PTC08_000479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001829782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HDK5682011.1"
                     /translation="MLLPKRVKYRRQHRPDTKGRSKGGNFVTFGEYGIQATTTSWITS
                     RQIESARIAMTRYMKRGGKVWIKIFPHTPYTQKPLEVRMGAGKGAVEGWIAVVKPGRI
                     LFEVAGVSEEVAREALRLASHKLPVKTKFVKREELGGETNES"
     gene            complement(14973..15626)
                     /gene="rpsC"
                     /locus_tag="PTC08_000480"
     CDS             complement(14973..15626)
                     /gene="rpsC"
                     /locus_tag="PTC08_000480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HDK5682012.1"
                     /translation="MGQKINPIGLRVGVIRDWDAKWYAEKDFASLLHEDLKIRKFIDK
                     ALKDASVSHVEIERAANRINIAIHTGKPGMVIGKGGSEIEKLRNKLNQLTDKKVHINV
                     VEIKKVDLDARLVAENIARQLENRASFRRVQKQAIGRAMKLGAKGIKTQVSGRLGGAD
                     IARAEQYSEGTVPLHTLRADIDYAHAEADTTYGKLGVKVWIYRGEVLPTKKNSEGGK"
     gene            complement(15650..16003)
                     /gene="rplV"
                     /locus_tag="PTC08_000481"
     CDS             complement(15650..16003)
                     /gene="rplV"
                     /locus_tag="PTC08_000481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000387528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="HDK5682013.1"
                     /translation="MEAKAVARTIRIAPRKVRLVLDLIRGKDVREAVAILKLTNKASS
                     PVVEKLLMSALANAEHNYGMNTDQLVVKEAYANEGPTLKRFRPRAQGRASAINKRTSH
                     ITIVVSDGQEEAQEA"
     gene            complement(16037..16315)
                     /gene="rpsS"
                     /locus_tag="PTC08_000482"
     CDS             complement(16037..16315)
                     /gene="rpsS"
                     /locus_tag="PTC08_000482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000533765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="HDK5682014.1"
                     /translation="MARSIKKGPFVDDHLMKKVEAQGDSEKKQVIKTWSRRSTIFPNF
                     IGHTFAVYDGRKHVPVYVTEDMVGHKLGEFAPTRTFKGHAADDKKTRR"
     gene            complement(16380..17213)
                     /gene="rplB"
                     /locus_tag="PTC08_000483"
     CDS             complement(16380..17213)
                     /gene="rplB"
                     /locus_tag="PTC08_000483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HDK5682015.1"
                     /translation="MALKHYKPITNGRRNMTTLDFAEITKSEPEKSLLQPLPKKAGRN
                     NQGKLTVRHHGGGHKRQYRVIDFKRNKDGIPGKVDSIQYDPNRSANIALIVYADGEKR
                     YIIAPKGLEVGQIIESGSEADIKVGNALPLKDIPVGSVIHNIELKPGRGGQLARSAGA
                     SAQVLGKEGKYVLVRLRSGEVRMILSTCRATIGQVGNLQHELVNIGKAGKSRWLGKRP
                     TVRGSVMNPNDHPHGGGEGRAPIGRPSPMSPWGKPTLGKKTRRGKKRSDKLIVRGRKR
                     K"
     gene            complement(17245..17520)
                     /gene="rplW"
                     /locus_tag="PTC08_000484"
     CDS             complement(17245..17520)
                     /gene="rplW"
                     /locus_tag="PTC08_000484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002506966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="HDK5682016.1"
                     /translation="MEARDILKRPVITEKSSAAMAEDKYTFDVDVRANKTEVKKAVEE
                     IFEVKVANVNIINYKPKKKRMGRYQGYTNKRRKAIVTLKEGQIDLFN"
     gene            complement(17520..18143)
                     /gene="rplD"
                     /locus_tag="PTC08_000485"
     CDS             complement(17520..18143)
                     /gene="rplD"
                     /locus_tag="PTC08_000485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015900976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HDK5682017.1"
                     /translation="MANYDVYKVDGSKAGTVELSDSVFGIEPNNDVLFEAINLQRASL
                     RQGTHAVKNRSAVRGGGRKPWRQKGTGRARQGTIRAPQWRGGGIVFGPTPRSYGYKMP
                     KKMRRLALRSALSYKVQENGFKIVDSFNLEAPKTKEFKTTLTNLELPKKVLVVTVGED
                     VNVELSARNIPGVTITTPEGLNVLELTHADSVLITQEAVKKVEEVLG"
     gene            complement(18170..18829)
                     /gene="rplC"
                     /locus_tag="PTC08_000486"
     CDS             complement(18170..18829)
                     /gene="rplC"
                     /locus_tag="PTC08_000486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000160215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HDK5682018.1"
                     /translation="MTKGILGRKIGMTQVFGENGELIPVTVVEAKENVVLQKKTVEVD
                     GYNAIQIGFENKEAYKKGRKTNKYATKAAEGHAKKADAAPKRFIREFRNVNVDDYEVG
                     QEVSVDTFEVGDIIDVTGTSKGKGFQGAIKRHNQSRGPMSHGSHFHRAPGSIGMASDA
                     SRVFKGQKLPGRMGGNTVTVQNLEVVQVDTENNVILVKGNVPGPKKGFVQIQSAIKAN
                     K"
     gene            complement(18857..19165)
                     /gene="rpsJ"
                     /locus_tag="PTC08_000487"
     CDS             complement(18857..19165)
                     /gene="rpsJ"
                     /locus_tag="PTC08_000487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001118669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S10"
                     /protein_id="HDK5682019.1"
                     /translation="MAKQKIRIRLKAYDHRVIDQSAEKIVETAKRSGADVSGPIPLPT
                     EKAVYTIIRAVHKYKDSREQFEQRTHKRLIDIVNPTPKTVDALMGLNLPSGVDIEIKL
                     "
     gene            19628..20014
                     /locus_tag="PTC08_000488"
     CDS             19628..20014
                     /locus_tag="PTC08_000488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682020.1"
                     /translation="MTRNSKTALVILSIIALVSEFITGFPLLGGWYVLALGWQPLAFN
                     AFIYLIMVLIFIFNRQNTIRPMLLIPAGGIIASALAVIPFVGMILHWIMFVLMIFLLI
                     VLFVTPVYLKASYTRYTHSERDHKRY"
     gene            complement(20633..21133)
                     /locus_tag="PTC08_000489"
                     /pseudo
     CDS             complement(20633..21133)
                     /locus_tag="PTC08_000489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219999.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(21355..22689)
                     /locus_tag="PTC08_000490"
     CDS             complement(21355..22689)
                     /locus_tag="PTC08_000490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000800694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HDK5682021.1"
                     /translation="MKKYFRFDENQTSYRREILGGLTTFLSMAYILAVNPQILSLAGV
                     EGVPDALKMDQGAVFVATALAAFVGCLFMGLIAKYPIALAPGMGLNAFFAFTVVLTMG
                     IPWQTGLTGVFFSGLIFSILTVTGLRETIINAIPFEMKMAVSAGIGLFITFVGLQGSG
                     IIKNEEATLVTLGKITDPGVLLAVFGIIITVVLYAKKIPGAIFIGMVATSIVGLLTQQ
                     IAPPNAIIGKVPSIAPTFGAAFESLQDPSQLFTIQFLIVILTFLFIDFFDTAGTIVAV
                     ASQAGMMKDNKLPRAGRALFSDSLATMVGAVFGTTTTTSYIESTSGVAVGARTGFASI
                     VTGVCFLLALFFNPLMAVVTPAVTTPALVVVGVLMASNLAEISWKRFEVAVPAFITII
                     MMPLSYSIATGIACGFIFYPITMVLTKRHKEVHPIMYGLMVIFILYFAFVHG"
     gene            complement(22810..24945)
                     /locus_tag="PTC08_000491"
     CDS             complement(22810..24945)
                     /locus_tag="PTC08_000491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase III"
                     /protein_id="HDK5682022.1"
                     /translation="MSKALILAEKPSVGRDIANALNVGSRKEGYFENQQYIVTWALGH
                     LVTNATPEQYDKKYQQWVLEDLPIIPKQMKSVVISKTRKQFNTIQNLMKRSDVKELII
                     ATDAGREGELVARLIIEKAHVKKPIKRLWISSVTPKAIKEGFKKLKDGRAYQHLYEAA
                     LARSEADWIVGINATRALTTKYDAQLSLGRVQTPTIQLVAMRQEQIKNFKPQQYYTLE
                     AEVNGVIMTYQHDGRVYQKEKLEAIVNTLQNKQAQVNSVHEKEKKVYPQPLFNLTDLQ
                     QAAYQKYHLGAKQTLNTLQQLYERHKLVTYPRTDSNYLTTDMVDTLKERVQATMGTEL
                     MPYAREILKQPLAKKLSFVNNQKVSDHHAIIPTEVRADVASLSPNEQKIYTMIAQRYL
                     EVLMPPYRYRAQHVEVNIGKHVFTYQSQVPIELGFKKLQQDRAQTERAVSFKQGETFD
                     VGQLQIVAHETTPPAYFNEGTLLKAMERPDKFFDLKDKKSAQTLKSTGGIGTVATRAD
                     IIDKLFNVNAIESHDGKIKVTSKGKQILDLAPPALTSPRLTAEWEDKLMKIEKGQYKA
                     HQFMQEMKQFTHEIIHTIKSSEQKYKHDNLTSAQCPTCGKFMLRVNTKNGSMLVCQDP
                     SCKTKKDVKTKTNARCPQCKKRLTKFGTGKKATYRCVCGYTETQEHMDQRFKNKGKDK
                     VSKREMKKYMKEDELENNPFKDALKGLNL"
     gene            25086..25946
                     /locus_tag="PTC08_000492"
     CDS             25086..25946
                     /locus_tag="PTC08_000492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDK5682023.1"
                     /translation="MKISQVTPNPTIASFIQTYVSERPSYTNKLPLDDEQALFTFLEE
                     AADETGLFVVEEADEIQMLLLCISYSEDRYKVIGPIVKNGYEPTKETFKQLFDAITAQ
                     HYQPSTYYFAFTAQHALIKTFMKTIGASYTFTDYHLETSQDLGETQNLHHMIPYSKAY
                     YRYFQRLHEDTFTHNAMTANEIVTSLDDQHELVLYMAEGILKGYLYLIYDESERHAEI
                     KYFSSHADYRLKGIAFDLIQHAIHRALTRPEIERVYFKIRSKNHKLVERFHELGFNIS
                     SEYQKFKIYK"
BASE COUNT         7213 a         5458 c         4498 g         8995 t
ORIGIN      
        1 aattcggaag gtacatcttt aagtaaccat acatttttat ataaatttct ataagtaggt
       61 tcatttttta aataagctag tactaacttt tcaaataaag tgcctctttc acgttgaatt
      121 tctccaccaa tttcattaat ttgattaatt agtttatcaa aactattaac aatatattct
      181 tctttagttt ccatattctt acctcccaaa aaatatcatt attattatct catatttcat
      241 tgagaatacg catcatttaa aatataaaac acctccagca aatgctgaaa ggtgttgaaa
      301 gttgttatgg aacacaaaat agcacctctc gaatattttc gagaggtgct ataaacgttt
      361 cttcagttga acacaaactg ctgacgcaat ttgcgaaccc catctgtaag cgaataaatt
      421 cgcaacagct gcagcttaac gttttgagaa ttgaggtgaa cgacgggctt ttttaagacc
      481 tggtttttta cgttctttca tacgtgggtc acgtgttaat aaaccagcac gttttaatga
      541 acctctgtat tccggatcag cttctaataa tgcacgtgcg ataccgtgac ggattgcttg
      601 tgcttgacca gtgaagccac caccgtgaac gttaactaaa acgtcatagt tacctttcgt
      661 ttctgttacg tcgaatggtt ggtttaagtc taagattaat gattcgaatg gtaagtattc
      721 acgtacgtca cgatcattta ctttaatgtt accttcacct ggtactaaac gtacacgtgc
      781 tactgagttt ttacgacggc ctgtgcctct atattcaact tgtgccaatg tcatttcctc
      841 cttctaatta accacgtaac tcgtagtttt ctggttgttg tgcagcgtgt ggatgttcag
      901 cgccaccata aacgaataat tttttacctt gtttttcacc taaacgtgaa cttggtaaca
      961 ttcctttaat agatgtttca agtaaacgtt ctgggttagt acgttttaac tcgccagctg
     1021 tgattgattt taaaccacct gggtgatttg agtgacggta gtaaatttta tcgttttctt
     1081 tgttaccagt caattcgatt tttgatgcgt tgatgatgat cacgtagtca cctgtatcaa
     1141 cgtgtggtgt gtaagttact ttatttttac cgcgtaagat agctgctact tctgatgata
     1201 aacgacctaa tgtttgccct tcagcatcga caacatacca tttgcgctca atgtttgatt
     1261 catttgccat aaatgtttga cgcataattg agtcctccta gtgaataaat gtttctatag
     1321 tttttgggtg attgtacgaa acaatccagt gcgctattta ttccgttagc tgttgctctt
     1381 tcctgcttat atatcttgta acacaataag tttccggggc ttatcgtggg gtgatataaa
     1441 acaataccgt taactatgat ataggtttta gcgcataaag tcaatgtgtt tcgttaaatt
     1501 tgtgttgatt ttttagagtg aatttgaatg tgatctccaa agtccgctgt taactgctct
     1561 ggcgctaaat aaatcttctc caaatacagt ccttctgcgg gtgctgtatg aggaacaaga
     1621 tttctatctt gctgcgctaa caagttggga acatcgtctg ctgaacgttt ccctttgccg
     1681 acttctaata gatatgccat aatgacacgc accatattgt acaaaaatcc tgatcctgta
     1741 atcacgaaat cgataccgtc tgcagtctgt tcaatacgac tttcatatat cgtacgttct
     1801 ttgctttcaa cttctgtttt ttgtgaacag aacgtcgtaa aattatgtgt accgacaaaa
     1861 tactgagccg cacgttgcat tgcttcaata tccaatgctt ttggctcgaa tgttttcaat
     1921 tgtgaccaaa acgggttgcg atgttcagct tgataaatgc tatagcgata acgtttcccg
     1981 acacagtcat agcgacaatg aaagtcttga tcaataaaag aaacatcatg aacataaata
     2041 tcatcaggca atgcattatt catcgcatgt tgccagcgtt cgggcgtaat gtttaaatgc
     2101 gtatcaaaat gaaaatattg tgctttagca tgtacaccac ggtccgttcg actggatgga
     2161 tgaatgcgta catgttgctg atgcatgcgt tttaatattt tttcaaagta gccttgaatt
     2221 gttcgccctt gattttgaat ttgaaatcct aaaaattgtg caccgttata actgatttta
     2281 acgaggacac gctgcataat atcgtccttt ctttaaaaag tatggcctaa ccatagagaa
     2341 accgctgcaa taggaacgag gctgataatt aataatgtgt ctttcagctg ccattttaaa
     2401 atgcgataac tcgttcgttc tgcattggca tcgtaacctc tcacttccat cgcaatcgca
     2461 agttcttctg cacgttgaaa cgcagaaata aacaatggaa tgagtaatgg aataaatgct
     2521 ttaattctcg cagccaatga acctgagcta atgtcagagc cccgtgattt ttgagataaa
     2581 atgattttat ccaattcttc cattaatgtc ggaataaaac gtaaggcaat cgacatcatc
     2641 atacttaatg ctgccacagg aattttaatg tattttaacg gtttaaacag acgatcaaat
     2701 gcatctgtca aattgagcgg actcgtcgtt aatgtcaaaa tcgttgagac aatcataatg
     2761 aatccgagtc gaagcatgat aagtatccct tctctaatcc cgtttgaatc aatagtaatg
     2821 aagccccatt caatcaaacg tgttccacct ttagtgagaa acagatgcat cataaaggtt
     2881 aaaattaaaa agaagaatac cggtaagagt cctttgataa gaaaccataa tggaatacgt
     2941 gcaagtttag taactgtgag taatataagt gcaagccaca aataacttaa aggcgcgtga
     3001 ctaaaaaaaa taatgataat aaacaaaaat acaaaaatca gtttcgcgcg cgggtccaat
     3061 cgatgtatga cggtatcgag cggaagaaaa cgtccaataa ttagcttatc cttcatgacg
     3121 ttgcctccat tcttcataaa tcgctacaaa cgatgcttct gttaatgcca acttgtcgaa
     3181 ctgtacgccc aatttcgcct caacatcacg ctgtaaccgc acaatgtcag gaaggcataa
     3241 gtgcaaagca ttgacgtcat cagggcgttg gaaaaagtca tacggcgtcg tggattctat
     3301 taaagttcca ccttgcatga ttttaatttc atcagcaaat tcagcgacat cgttcatatc
     3361 gtgtgtcact agaataatcg ttttcccttc ttccaactgt agtttcttaa acaacgccat
     3421 cacttgagct ttacttcgtg gatctaaacc cgctgtcggt tcgtctaaaa ttaaaatatc
     3481 cgggtccatc gctaatatgg cagcgagcgc aattttacgc atttgccctc ctgagagtag
     3541 aaacggagac tgctgcatca ctttttctgc atcaaaaccg agttcaccaa gcaacgtcat
     3601 tgctttgtca cgtgcctctt ctatgtcaag cccataatta cgtggtccga acaatacttc
     3661 cttttcgaca gtttcctcaa ataactggga ctccggaaat tgaaaaacca tacctatccg
     3721 ttgacgaatc gatttcagat gtttatcttt cgtttttcgg ttgacggtga catctagcac
     3781 ttggaccttg ccacgggtcg gtttcactaa accattgaaa tgttgaatca atgtggactt
     3841 gccagacccc gttttaccga taatcgcata ataacgtcca ggtaaaaact ctgttgagat
     3901 ttgatttaac gcttgatatt cataaggtgt attcttttga tacgtatagg aaacttcttc
     3961 aaatttaatc atgtcaaccg ctccaataat ccttcatacg ttataaacga ttggctaaga
     4021 tttaactttt gagccatgcg catctcaaag ggcaaatcca aaccaatttc tactaacgct
     4081 tcacctttct caaaaatctt ttcaaccgtt ccttctaaaa acacttcgcc gcgattcatc
     4141 acaatcacac gatctgacga cacgacttct gaaaggtcat gtgtaatcgc aatgaccgta
     4201 acacctttat gtcgattgag tgctttcacc atcgctagta tatcacgctt accttctggg
     4261 tccaacatcg ccgtcgcttc atctaaaata atcaattgcg gttctaaagc taaaacactc
     4321 gcaatcgcga cacgctgttt ttgaccacca gaaagcgcag taggttcatg atgctgttta
     4381 tcatacatat ctacatcttt aaggactaaa ggcacaatgt catgcatctc attgtaggac
     4441 aatcctttat tttctaaacc aaaagccaca tcatagctta ctgttgatcc tacaaattga
     4501 ttttcaggat tttgaaacac gatgccaata tgatgttcaa aagctgaacg atcgacacct
     4561 ttaatcgaac tgccgttaat acgaatatcg ccttgataat cttgttcaat acctgtgagc
     4621 agtttcgcta atgttgattt acccgaaccg ttatgaccga caatagataa ccattcacct
     4681 ttgttcactt tgaattggat atcatttaaa actttcggtt gatcctcatg atattgaaat
     4741 gaaacgtgat caaattctat caagtgctcg tgttccattt ctagtgcctc ctttatgtgc
     4801 taatatgact attttacaaa aaacaacgcc atttgtatat gtatcggaaa tgtttgcctg
     4861 cgattcaatc ccatcgtatg ccattagcgt ttctgacttg acttaacgct tatcgtccca
     4921 ttaaaaaaag gatatgagac aatcaaccat catctcacac ccttgtctat tattgtcaga
     4981 ctgagacaca tctaagtttt cacagtcttg atcttctcat agtcttattt tcaatcagta
     5041 atgataaagc agtcaaaaaa atgaggacga ttggaacaca aaagtttgac gtcccgaccc
     5101 atccaacatt gacataaaaa agcgcgcacc ccatctgaat tgagttcacg ctttgtcgtc
     5161 aatattaagt tagatggggt actctgagct agacaatatt tgtatgtggc aaacattatc
     5221 gttgcactca tttgctttca tgtagtagtg tgtatcaatt atactaattc aatgattact
     5281 tttaatgcgc catcgccttg acgtggagca actttaagaa tacgagtgta accaccttga
     5341 cgctcttggt aacgttcagc gatttcaccg aataattttt gaagtgcagt ttgagtcgtt
     5401 tcatcttcgt ttaagatttg aacgttgcgt aatgttttag cagcattacg acgagaagct
     5461 aagtcacctt ttttacctaa agtgatcaat ttttcaacta cgctacgaag ttctttcgca
     5521 cgtgcttcag tcgtttcgat gcgttcgcta acgattaatg atgttgctaa gtcacgtaac
     5581 attgctttac gttgatctga agtacgacct aattttctgt aacccatgag ttaacctcct
     5641 ttatcaatct tcttttctta gacctaaacc taagtcttct aatttgtatt ttacttcttc
     5701 aagagactta cgacctaagt tacgaacttt catcatatca gcctctgatt tgtcagcgag
     5761 ttcttgtact gagttaatac ccgcacgttt aagacagttg tatgaacgta cagataagtc
     5821 taattcttca atagacattt ctaatacttt ttctttttga tcttcttctt tttcaatcat
     5881 gatttctgca ttttgtgctt cgtcagttaa gccaacaaag atgtttaaat gctcagtcat
     5941 aattttagca gctaaagata ctgactcttg cggtgtaatt gagccatcag tccatacgtc
     6001 taatgtcaat ttgtcgaagt cagaactttg tcccacacgt gtattttcaa ctgtataatt
     6061 cacacgctct actggagagt ataatgaatc tactggaatc acaccaattg gaagatcact
     6121 tgagttattt tgatcagcta atgcataccc acgtcctgta ttcgcaacta aacgtaactt
     6181 aaggtgacca cctttagaca ctgtcgcaat tttaagatca gggttcaaaa tttcaacatc
     6241 actgtcatgc atgatatctt ttgcagtgac ttcgccttct tctttaatat cgatttcaag
     6301 tgttttatcc tcttcagaat aaatcttaag tgctaacttt ttaatattca tcacaattgt
     6361 agaaacatct tcaacgacat gatcaattgc agagaattcg tgtaacacac cttcaatttc
     6421 gatatacttc acagccgcac ctggtaatga tgatagtagg atacgacgta aggagtttcc
     6481 tagtgtagta ccataaccac gctctaatgg ttcaacaacg aacttaccga atttagcatc
     6541 atcactaact tcaattgtct caattctagg tttctcaatt tcaatcattt acatatcctc
     6601 cttaagtacg tcgacttgca taaactttaa attcaagtga tttgtgacaa aacgaaaatt
     6661 taattatacg cgacgacgtt ttggtggacg gcaaccatta tgtggaactg gagtaacgtc
     6721 tttaatcgct gttacttcta aacctgctga ttgtaacgca cggatcgctg actcacgacc
     6781 tgggccaggg ccttttacag ttacttcaac tgattttaaa ccatgctcca tcgctgcttt
     6841 tgaagctgtt tcagaagcca tttgtgctgc gaatggtgta gattttttag aacctttaaa
     6901 accaagcgca cctgcagatg accatgataa agcattaccg aattcatctg taattgttac
     6961 gattgtatta ttgaatgttg aacggatatg agccacaccg ttttcaatat tctttttcac
     7021 tctacgttta cgtgatactt gtttacgtgc catagtataa tttgcctcct ttacctatta
     7081 ttttttcttg ttagctacag ttttaactgg gcctttacgt gtacgagcgt tgtttttagt
     7141 tttttgaccg ttaactggta aaccacgacg gtggcggata ccacggtaag atgagatttc
     7201 catcaaacgt ttgatgttta agtttgtttc acggcgtaag tcaccttcaa ctttataacc
     7261 gtctacaact tcacgaatac gacctaactc atcgtcagta aggtctttaa cacgtgtatc
     7321 ttctgaaacg tttgcttctg aaaggatctt ttgtgctgat gttttaccga taccgtagat
     7381 ataagttaat gagattacta cgcgtttatc acgtgggata tcaattcctg caatacgtgc
     7441 cattataatt tacacctctc ttttaattaa ccttgttttt gtttatgctt agggttttca
     7501 cagattacca tgactttacc tttacgttta atgactttac atttttcgca aataggtttt
     7561 actgatggtc ttactttcat ttttatacct ccttcaatgt tggagtgaca attatttata
     7621 acgatatgtg attcttccgc gtgttaaatc atacggagac atttctactg ttactttgtc
     7681 gccaggtaga atacggatat agttcattcg aattttacca ctcacatgtg ctagaatttc
     7741 atgaccattt tctaattcta ctttaaacat tgcatttggt aaagtatcta atactgtacc
     7801 ttcaagttcg ataacgtctt gttttgccat ttggaataac gcctcccttt tgttgtaagg
     7861 atatagaata tttattcatg aacggtctac tttagttata ctcactttta cacaatcgtt
     7921 ataaagcctt gtcaccataa aaatcaattt atgctatcaa agttaacgac tgattcaaaa
     7981 tgatctcacc aagccgttat gatttaagtg actctaaaat ttcaatcaca tctgatgtaa
     8041 cttcatcaat gtgttttgac ccgtcgatgt ttttcaaaag acctttttga ttgtaaaact
     8101 ctaaaatagg tttagattgc tttacattca cttctaaacg gttcgcaaca gtttcagggt
     8161 tgtcgtcttc acgttgataa agcttaccac catcaatatc acaaatacct tcaacttttg
     8221 gaggattgaa aacaagatga tatgttgtgc cacaagtctc gcaaatacga cgacctgtta
     8281 gacgattcat gagttcttct tctggcacct cgatattcac aactgcatca atcgttcttc
     8341 caagttcttc taggattgaa tttaatgctt ctgcttgctc aatcgtacga ggaaatccgt
     8401 ctaataagaa accttttttt gcatcgtctt cagagatacg ttcttttaca atcccaactg
     8461 taacctcgtc tggtacaagt tcaccacgat ccatatagga tttcgcttct ttacctagtt
     8521 cagtttcatc tttaatcgct tttctgaaca tatcccccgt tgaaatgtga ggaatagggt
     8581 actttttaat gatttcactc gcttgagttc ctttaccagc accaggcaat cccattaaga
     8641 taatgttcat aagtgccctc ctacaaatta tcgtctacca aagcctttat attctttttc
     8701 attcacttga gcttctaaac ttttcattgt ttcaatggca acaccgataa cgatgagtaa
     8761 gcttgtacca cccaattgaa ttgcttgtgg taagttcata aatttagttg cgataattgg
     8821 taaaatcgca atgaccgcta agaaaattga acctacaaac gttaagcgat ataagacttt
     8881 agtgatatat tttttcgttt gttcaccagg acgaatccct ggaacgtaac tgccttgctt
     8941 cttaagattt tctgccatct tttcagggtt gacttgaaca aatgcataga aataagtaaa
     9001 tgcaataatc aagacaacat aaactaccat acccatatta tgagatgggt cagcgtaatt
     9061 tcctagcttt tgtgcccagt cggcatccgg gaagaacaat gataatgttc tcggtaataa
     9121 aaagaatgcc attgaaaaga tgactggaat cacaccagct gagttaactt ttaatggtaa
     9181 gtatgttgct tgtgaaccaa gacgcatatg agattgtttc tttgcatatt gaataggtat
     9241 tttacgaatc gcttgtaata catataccgc gccgacagtt aataaaatca taccgacaac
     9301 gagtccagcg actttcaacc aagcgaatgt aacatcatct tgtccgataa actcctgttg
     9361 gtaaaattgc atgagtccag acggtaatgt agataaaata cctgcaaaga tgataataga
     9421 aataccatta ccaacaccat attgcgtgat ctgttcacct aaccacatta aaaatgcagt
     9481 tcctgacgta agtactattg caattaacaa atacgaccaa acattttgtt ctttgataag
     9541 tgccccgtcc aaataattat tgaattggaa cgacatacca atcgattgaa taaatgctaa
     9601 aacaattgtg aaataacgtg tgaagttgtt taacttctta cgaccagttt caccttgctt
     9661 tgcccattca gtaaacttag gtacaatatc catttgcaat agttgcataa caattgaagc
     9721 agtgatgtag ggcatgattc ccatagcaaa aatggaaaag ttcttcaagg ctccgccacc
     9781 aaacgtgttt aacaagtcag tgacgccttg agaaccttgt cgattatcaa atgctgctgg
     9841 attaacacca ggtgctggga tatacgtacc tattttgaaa atgactaaca ttgcaagagt
     9901 aaaaagtatc ttgttacgaa cttcttttgt tttaaaaaag ttcacaagcg tgtgaaacat
     9961 tagatcacct cttgtgctcc gcctttcgct tcaatagcgg ctttagctga agctgagaat
    10021 ttgtgtgctt taacagttaa tttcttttct aatgaaccat tacctaaaac tttaatgcca
    10081 gctttttcat tcttaactac gcctgtttcg attaataact caggtgttac ctcagtacca
    10141 tcttcaaatt gattaagttg gtccaagtta acgatagcgt attctttacg gttgatgttt
    10201 gtgaaaccac gttttggaat acgacggaat aatggtaatt gaccaccttc gaaacctggt
    10261 cttacgccac cacctgaacg tgctttttga cctttttgac cacgaccact tgttttaccg
    10321 ttaccagtac ctgcaccacg gccgacacgg ttacgtaatt tacgtgatcc ttctgatggt
    10381 tttaattcat gtaatttcat tttggcacct ccttaattat ttttcttcta ctgatactaa
    10441 gtgacttact ttgttaattt gtccacgaat tgctgcgttg tcttcaactg taacagatga
    10501 attgacctta cctaggccaa gtgctttaac tgttttacgt tgtgtttctg gacgcccaat
    10561 aacgctttta gtgagggtga tttgtaattt agccatttat ctgtttccct ccttaattgt
    10621 ataattcttc tactgttttg ccgcgtaaac gcgcaacatc ttcagcattt ttcaagtttt
    10681 tcaaaccatt gattgtcgca cgaaccatgt tgattggtgt atttgaacct aatgatttac
    10741 ttaagatatc agtgatacct gcaagctcta atacggcacg aactggtcca cctgcgataa
    10801 cacctgtacc aggtgctgct ggtttcatta aaacacttcc tgaaccgaaa cgtccagtga
    10861 ttgtgtgtgg tgtagtaccg tcaacacgag taactgtaat taaatctttt ttcgcagctt
    10921 ctactgcttt tttgattgcc tcaggtacct cttgtgcttt accagtaccg aatccaacgc
    10981 gaccattttt gtcacctact actacaagtg cagtgaaacg gaaacgacgt ccacctttta
    11041 caactttagc aacacggtta atcgtaacaa cgcgttcttc aaattcttta acttcttctt
    11101 ctctacgagc catttatatt gtccctcctt ttagattaaa attgaagtcc attttcgcga
    11161 gctgcatctg ctagtgcttt cacacgtccg tggaataagt atcctccacg atcgaataca
    11221 actgcttcga tgcctttttc atttgctttc ttagcaatta cttcgccgac tttagatgcc
    11281 atttcaactt ttgttgtaga agcatctact tcgctatctt tagttgaagc ttgaactaaa
    11341 gtaacgcctt tagtatcgtc gatgatttgt gcatagatgt gtttgtttga acgatatacg
    11401 tttagacgtg gcttttcgct agtacctgac aatttcgtac gaacacgtgc atgtcttttt
    11461 aaacgtactt tatttttatc aattttgctg atcatgtcaa tactcctttc ttattagagt
    11521 gatttattat ttaccagttt taccttcttt acgacgtaca tattcacctt ggtaacggat
    11581 acctttacct ttgtaaggct ctggaggacg aacgtcacga atttttgatg ctgttgcacc
    11641 tactaattct ttgtcgattc cttcaacttt aactgtcgta tttttttcta ctgagaaagt
    11701 gattccttca gcagcttcaa attcaactgg gtgagagtaa cctacgttta atacaagttt
    11761 gctaccttga acttgtgcac ggtaaccaac accgataagt tcaagtgttt tttcgtatcc
    11821 tttagataca ccttgtacca tgttattgat taacgcacga gttgtaccat gaattgttct
    11881 atgttcttta gaatctgatg gtctaacaac ttcaagtgtg ttttcatctt gtttgtaagt
    11941 catttcttca tttaaagttt gtgataattc acctttaggc ccttttactg aaactgtatt
    12001 tccttcgatc gttacagtga catcgctagg gatttcgata atttttttac caacacggct
    12061 catgttctgg cacctcctta tttatttaat attaccaaat gtaagctaat acttctccgc
    12121 ctacgttacg ttttctagct tctttatcag tgattacacc ttcagaagtt gaaactaatg
    12181 caatacctaa accgtttaat actttaggca cttcgtttgc tttagcataa acacgtaaac
    12241 caggttttga aatacgttta agaccagtaa taacacgttc gttatttgaa ccatatttta
    12301 agaataaacg gataacacct tgtttatcat cttcgatata ttctacattt ttgatgaaac
    12361 cttcattttt aaggatttca gcaatttctt ttttaatgtt tgatgcaggt aattctaatt
    12421 tttcgtgacg caccatgttt gcgtttctta cacgagtaag catatctgca attggatctg
    12481 acaatgtcat agttgttgcc tcctttcaag agttaaattt ttaccagcta gctttacgta
    12541 cgccaggaat ttgacctttg taagctaatt cacggaaaca aatacggcaa agtttaaatt
    12601 tacgatatac agaatgtgga cgaccacaac gatcgcaacg tgtatattca cggacttgga
    12661 atttttgttt acgttgttgc ttaacaacca ttgatttttt agccatctaa ttcgcctcct
    12721 ttagagatta tttttgaaac ggcataccga attgagttaa taattcacgc gcttcttcat
    12781 ctgtgttagc agtagtaacg ataacgatat ccataccacg tacttttgat actttatcat
    12841 agtcaatctc agggaagatt aattgttctt taacacctaa tgtgtagtta ccgcgaccgt
    12901 cgaatgcatt tttagataca ccgcggaagt cacgtacacg tggtaatgaa actgagatta
    12961 atttatctaa gaattcatac attctttcgc cacgtaatgt tactttagca ccaattggca
    13021 taccttcacg taaacggaat gtcgcaactg attttttcgc tttagtgatt aatggttttt
    13081 gaccagtgat tgcagttaat tcttcaacag cgttatctaa tacttttgag ttttgtactg
    13141 cgtcacctac acccatgttc acaacaattt tatcgattct aggtacttcc attactgagc
    13201 tgtagttaaa ctttttaact aagttttgtg taacttctga attaaatttt tcttttaaac
    13261 ggttcaaagt ggatcctcct ttcaactaga tattaattag acttaatttc ttcgcctgat
    13321 tttttagcga ttcttacttt tttaccatca acaaatttgt agcctacacg tgtaggttcg
    13381 tttgttttag ggtctaatat ttgtacgtta gaaacatgaa ttgctgcttc agtttctaag
    13441 attccacctt caggattcat ttgagttggt ttttggtgtt ttttaacgat gttcacacct
    13501 tccacaacga cgcggtcttt tttaggttga gttgctacaa ctttacctgt tttacctttg
    13561 tctttacctg cgataacgat tacgttgtca ccttttttga tatgcatgtg ggcacctcct
    13621 tggaatttat tatttatgat ttacgatcga ttatagtact tctggtgcta aggaaacgat
    13681 tttcataaag tttccttcac gtaattcacg tgctactggt ccgaagatac gtgtaccacg
    13741 tggtcctttg tcatcacgaa tgataacaca tgcattttca tcaaatttga tgtaagaacc
    13801 gtctttacga cgtacacctg atttcgtacg tacaacgaca gccttaacaa catcgccttt
    13861 cttaacaacg cctccaggtg tagcattttt aacagttgct acgatgacgt caccgatgtt
    13921 agcagttttg cggccagatc cacctaatac tttgattgta agtacttcac gagcaccaga
    13981 gttgtctgct acttttaaac gtgtttcttg ttggatcatg attaaacctc ccttatcttt
    14041 atagtcatta aatgattact gattcttcga cgatttctac taaacggaaa cgttttgtcg
    14101 ctgataaagg acgagtttct tgaattttaa cgatatctcc gaatttagct gaattgtttt
    14161 cgtcatgtgc tttatacttt ttagagtatt ttacacgctt gccatatagt ttgtgcgttt
    14221 tgtatgtttc aactaaaaca gtcactgttt tgtccatttt gtctgaaaca actttaccaa
    14281 cgtaaacttt acgatcattt ctttcgctca ctttagtaac ctcctctttc aatcaattat
    14341 tgatttgctt taccttgttc taattctctt tcacgtgcaa cagtttttag acgtgcaatt
    14401 gtttttctta ctgttttaat tcttgcagtc tcttctaatt gacctgtagc taattgaaag
    14461 cgtaggttaa aaagctcttc ttttgaagat ttgatttgct cttcgatttc tgaagtggtt
    14521 aagtctctaa tttccttagc tttcatttgt ttcaccaccc aattcttcac gttttacaaa
    14581 cttcgtttta actggaagtt tgtgactcgc taaacgtaat gcttcacgcg caacttcttc
    14641 agatacgcca gcaacttcaa ataaaatacg acctggttta acaactgcga tccagccttc
    14701 aaccgcacct ttaccagcac ccatacgtac ttctaaaggt ttttgtgtgt atggtgtgtg
    14761 agggaagatt ttaatccaaa ctttcccgcc acgtttcatg taacgtgtca tagcaatacg
    14821 agctgattcg atttgacgag aagtaatcca agatgttgtt gtagcttgaa taccatactc
    14881 accaaatgtt acaaagttac cgccttttga acgacctttt gtatcaggac gatgttgacg
    14941 acgatatttt acacgctttg gtagtaacat aattattttc ctccttcact atttttctta
    15001 gtaggaagaa cttcaccacg atagatccac actttaacac ctaacttacc ataagttgtg
    15061 tcagcttctg catgtgcata atcgatgtct gcacgtaaag tatgaagtgg tacagttcct
    15121 tctgaatatt gttcagcacg cgcgatgtct gcaccgccta aacgacctga aacttgtgtt
    15181 ttgatacctt tagcacctaa tttcattgct ctaccgatcg cttgtttttg aacacgacgg
    15241 aatgaagcac gattttctaa ttgacgtgca atgttttcag caactaaacg tgcatcaagg
    15301 tcaactttct tgatttcaac tacgttaatg tgaacttttt tgtcagtaag ttgatttaat
    15361 ttgttgcgaa gtttttcgat ttctgaaccg cctttaccaa ttaccatacc tggtttacca
    15421 gtgtgaatag caatgttgat gcggttagca gcacgctcaa tctcaacgtg agatactgat
    15481 gcgtctttca atgctttatc aataaattta cgaattttta agtcttcatg taaaagtgat
    15541 gcgaaatctt tttcagcgta ccatttcgcg tcccagtcac ggattacacc aacacgaagt
    15601 ccgattggat taattttttg acccacggta ttccctcctt aaaatttgat taagcttctt
    15661 gagcttcctc ttgtccatca cttactacga tagtgatatg acttgttctt ttgttaattg
    15721 cgcttgcacg tccttgtgca cgtggacgga aacgtttcaa tgttggtcct tcgttagcgt
    15781 atgcttcttt aacaactaat tgatcagtgt tcataccata gttgtgctct gcattagcta
    15841 aagcggacat taataatttt tctactactg gagaagaagc tttatttgtt aatttcaaaa
    15901 tagctactgc ttctcttacg tctttacctc gaatgagatc caatactaat cgaactttac
    15961 gaggtgcgat tctgatagtt ctagcaaccg cttttgcttc cattcgtatt tcctcctcta
    16021 cttactagaa atggtattat cttcttgttt tcttgtcgtc tgcagcatgt cctttgaaag
    16081 tacgtgttgg agcaaattca cctaatttgt gtccaaccat atcttcagtt acatatacag
    16141 gtacatgttt acgtccgtca tatactgcga atgtgtgtcc aataaagttt gggaaaatcg
    16201 ttgaacgacg tgaccatgtt ttaattactt gctttttctc gctatcgcct tgagcctcaa
    16261 cctttttcat taagtgatca tcgacgaaag gtcccttttt aatactacga gccatattgg
    16321 cgcctccttt cttattatgt gcgtgcagcg attacgccgc acacccaaat aagctatttt
    16381 tattttctct tgcgtccacg tacgataagt ttatctgaac gttttttacc acgacgagtt
    16441 ttcttaccaa gcgttggttt accccatggt gacattggag atggacgtcc gattggcgca
    16501 cgaccttcac caccaccgtg tgggtgatca ttagggttca ttacagaacc acggactgtt
    16561 gggcgtttac ctaaccatct agatttaccc gctttaccaa tgttaacaag ttcgtgttgt
    16621 aagttaccaa cttgaccaat agtagcacgg caagttgaaa gaatcatacg tacttcacca
    16681 gaacgaagtc ttacaagtac atatttacct tctttaccta atacttgcgc gctagcacct
    16741 gctgaacgtg caagctgtcc gccacgacca ggttttaatt cgatattgtg gataactgaa
    16801 cctacaggaa tgtcttttaa tggaagtgcg tttccgactt taatgtctgc ctcagaacca
    16861 ctttcaatga tttgacctac ttctaagcct ttaggtgcaa tgatgtagcg tttttcacca
    16921 tctgcatata cgattaatgc aatgtttgct gatctatttg gatcatattg gattgaatcc
    16981 actttaccag gaattccatc tttattacgt ttgaaatcaa taacacggta ttgacgtttg
    17041 tgtccgccac catgatgacg tacagtcaat ttaccttggt tattacgacc cgcttttttc
    17101 ggtagcggtt gtaataatga cttttcaggc tcagattttg tgatctcagc aaaatctaat
    17161 gtagtcatat tacgacgacc atttgtaatt ggcttgtaat gtttaagagc cattgtcgct
    17221 tacctcctta ttggtattta gtttttagtt aaataagtcg atttgacctt cttttaatgt
    17281 cacaatcgct ttacgacgtt tgtttgtata gccttgataa cggcccatac gttttttctt
    17341 tggtttatag ttgataatgt tgacattagc aacttttact tcaaagattt cttctactgc
    17401 ttttttcact tctgttttgt tagcacgtac gtctacatca aaagtgtatt tatcttcagc
    17461 catagctgca gatgatttct cagtgattac ggggcgcttt agaatgtctc tagcttccat
    17521 tatccgagca cctcctcaac ttttttaact gcttcttgag tgattaatac gctgtctgcg
    17581 tgagttaact ctaatacgtt taaaccttct ggtgttgtga ttgttacacc tggaatgtta
    17641 cgtgctgata attcaacatt tacatcttcc ccaactgtta caactaacac ttttttaggt
    17701 aattctaagt ttgttaaagt tgttttgaat tcttttgttt ttggtgcttc taagttaaaa
    17761 ctatcaacaa ttttgaatcc attttcttgt actttgtaag aaagtgcaga acgtaatgct
    17821 aaacgacgca ttttcttagg cattttgtag ccatagcttc ttggtgttgg accgaatacg
    17881 ataccaccac cacgccattg tggcgcacgg attgtacctt gacgcgcacg tcctgtacct
    17941 ttttgtctcc atggtttacg tccaccgcca cgaacagctg aacggttttt taccgcgtgt
    18001 gtaccttggc gtaatgaagc acgttgtaag ttaattgctt cgaataaaac atcattattt
    18061 ggttcaatcc cgaatactga gtcgctaagt tctactgtac cagcttttga accgtcaact
    18121 ttatatacat cataatttgc cattatgcat ttcctccttt cgctactaat tatttgttag
    18181 ctttgattgc tgattggatt tgtacaaaac cttttttagg tccaggtaca ttacctttaa
    18241 ctaaaattac gttgttttcc gtatcaactt gaacaacttc taagttttga acagttactg
    18301 tattaccacc catacgacct ggtaattttt gccctttgaa tacgcgtgat gcatctgatg
    18361 ccatcccgat agaacctggt gctctgtgga aatgagaacc atgagacata ggtccacgtg
    18421 attggttatg acgtttgatt gcaccttgga aacctttacc ttttgaagtt cctgttacgt
    18481 caataatgtc gccaacttca aatgtatcta ctgagacttc ttgacctact tcgtaatcat
    18541 caacattaac gtttctgaat tcacgaatga agcgcttagg tgctgcgtca gcctttttag
    18601 catgaccttc agctgcttta gtcgcatatt tattagtttt tctacctttt ttgtatgctt
    18661 ctttgttttc aaaaccaatt tggattgcgt tgtaaccgtc aacctctact gttttctttt
    18721 gtaatactac gttttcttta gcttctacta ctgtaactgg gattaattca ccgttctcac
    18781 cgaacacttg agtcatcccg atttttcttc ctaagattcc tttggtcatc gaaagtccac
    18841 ctcctaaaat tttctattat aatttaattt cgatgtctac acctgatggt aagtttaagc
    18901 ccataagcgc gtcaactgtt tttggcgtag gatttacaat gtcgattaaa cgtttatgtg
    18961 tacgttgttc gaattgctca cgagaatctt tgtacttatg aaccgcacga atgattgtgt
    19021 aaactgcttt ttcagttggt aatggaattg gaccagaaac atccgctcca gaacgttttg
    19081 cagtttcaac aattttttct gctgattgat cgataacacg gtgatcataa gcttttaatc
    19141 taattctgat tttttgtttt gccatgattt accctcctta ttcgtcttca ttaaagtgat
    19201 agacttctcc acgaaaacta tctcacacaa cgccatggca aagcggccgg gtgtgtcagt
    19261 aacctttcgc ttcatcgcat taaaagtcca acattagaca tgatacatga aatgtgttca
    19321 cttcgcaact atttatacaa agttttttat gtctaattca catacctcat cattttactt
    19381 gatatatgct ttaagttcaa tagcttagag agattttttc aaatttaatc ttacattttg
    19441 tttcttatca tttaaacaat tataataatg gtaaatcttt tttccattgt gatatgataa
    19501 tccgacaaaa tgttgaggca ctgcattaaa actttctata ttatatagtg tagaatagtt
    19561 acaatgtatc cccacatcgc aagcgtcgtt ttaggcgttt gattaaatca ttaaggagtt
    19621 gcttattttg acgagaaatt ctaaaacagc tttagttata ctatctatca ttgcacttgt
    19681 ttccgagttc attactggct ttccccttct aggtggttgg tatgttcttg cactaggttg
    19741 gcagccactc gcatttaatg catttatcta tttaattatg gtgcttatct ttattttcaa
    19801 tcgccaaaat acgattcgtc ctatgctact tatccctgct ggcggtatca ttgcaagtgc
    19861 cctcgcggtg attccttttg taggtatgat tttgcattgg attatgttcg tattaatgat
    19921 cttcttactg attgtattat tcgtaacccc tgtttatctt aaagcttcat atacgcgtta
    19981 tacgcattct gaacgtgatc ataaacgtta ttaaattatt tcatggggat tgaaaaaata
    20041 ttgatgctat tgttgcagca gtttatttaa cttgttctca atgatttctg actttgatta
    20101 ccttttcgtc ttcgctttcc gggggactgg cccttcaatt caattctgct tgattgaagc
    20161 acacatgaga tggaagtcga atgagatttt gggagcagta cagaaatctc ctgtgtcaca
    20221 aagatttcat tttactgccc ccgcaatgat gactagactt cacaaaagag agcgtattga
    20281 gaagccaaac cactactgcg ataaactgta accactttta aagtaaagaa gtaactgcta
    20341 gcagtataca gtcattccca cagacgactc agccttctgg gcaatcttac agtaatcatt
    20401 ttgagggcaa gttaataaaa gcaagaaaac aatagtatca ttttttaata tcccattccc
    20461 cctcatttgg ctaccgttta aaatcattat tgaatcataa atctttgaat ggattgatga
    20521 ataaattttt ctatgcccca ccctttgtgt ccttttggct gattcatccc aatcgccttt
    20581 aacaatcgag taggagaata accgttatcc tgctattcgt cctctcacac ggttacttac
    20641 tcgacggttc aatatcttgc ctaagcccat taagaatgag ttgtctaatt cgtcggttta
    20701 accaagattg tgtggtttca ataaattctc tgataaaacc tctaccaaag taatttatcc
    20761 aacctcgcgt cacttggtta attttagtga taatgtcttt aaaagttcca ggtctatttc
    20821 gttttgttat ttcccttaag gtgcgtatta aatttctttt tgcttccgtg gtcggtctaa
    20881 aacgacaaac cccattacct tggttattag acaactcaag aactttaagc gtgtgactgc
    20941 tcctacttta cttttctctt ccaagcagtt ttttcgttat ctgtgaaaag tactgcaaaa
    21001 agtggacaag aagttcacta actttcatac tgtcaattcc aagagcgcct ttatttttct
    21061 taaccttctt gatagcattt tctatatttt caggtcttac aacaagctcc atcagtgatg
    21121 cagattcatc cattctacat agccttagta tgatgtttct gttcgtcggt gcgagtgttt
    21181 gcgtccgact tccttcagat tccacttcgc aatggactcc cttgtttttc gctaacagtt
    21241 cctactacga agcctgtaat ggactttcac cgtcaagatg ttacccattt cgagcgcacc
    21301 ctaaaaaagc ccgaatagtg catgacacac tactcgagct tcattaaagt gattttaacc
    21361 atgtacaaat gcgaaatata aaataaagat taccattaaa ccatacataa ttggatgtac
    21421 ttctttatga cgttttgtta agaccattgt aattggataa aaaataaagc cacatgcaat
    21481 ccctgttgca attgaatatg aaagtggcat cataataatc gtaataaatg ctggtactgc
    21541 cacttcaaaa cgtttccagc tgatttccgc taaattcgaa gccattaata cgccaacaac
    21601 gactagtgca ggtgtcgtta ctgctggcgt aaccactgcc attaacggat tgaagaataa
    21661 tgcgagcaag aaacagaccc ctgtcacaat actagcaaaa cctgtacgtg cgccaactgc
    21721 cacacctgaa gttgattcaa tgtaagacgt cgtcgttgtt gtaccgaaga ctgcccccac
    21781 cattgttgct aatgagtctg agaacaacgc acgtcctgca cgtggtaatt tgttgtcttt
    21841 catcatgccc gcttgagatg caaccgcaac gattgtccct gctgtgtcaa agaagtcgat
    21901 gaatagaaat gttaaaatga caattaaaaa ctgaatcgta aacagttgtg acggatcttg
    21961 gagtgattca aacgctgccc caaatgtcgg tgcgatactt ggcactttac ctataatcgc
    22021 gtttggcggt gcaatttgtt gcgtcaataa accaacgatt gatgtcgcaa ccatcccaat
    22081 aaagatagca cccggaattt tcttcgcgta taacacaact gtaatgataa taccgaacac
    22141 tgctaataat acaccgggat ctgtaatttt ccctaaagtt acaagtgtcg cttcttcatt
    22201 tttaataatt cctgaacctt gtaagccgac aaaggtgata aataaaccta tccccgctga
    22261 aacggccatt ttcatttcaa atggaatcgc gttaataatg gtttccctca aaccggtaac
    22321 tgttaatatc gagaagatta atcctgagaa gaagacccct gttaagccgg tttgccacgg
    22381 aatccccatc gttaatacga ctgtaaatgc gaaaaatgca ttcaacccca tacctggtgc
    22441 gagtgcaata ggatatttcg ctatcaagcc cataaataaa cagccgacaa atgcagcaag
    22501 tgctgtcgca acgaacacgg caccttggtc cattttaagt gcatcaggta ccccttcaac
    22561 acctgcaaga ctcaatattt gtggattgac agctaaaatg tatgccatcg acagaaacgt
    22621 tgttaagcca cctaaaattt cgcgacgata actcgtttgg ttttcgtcaa atcggaaata
    22681 ttttttcact ttaattttct cctttaaatg aaatactcca atagtctaat acgattacgg
    22741 gtgaatttca acaatttttc cgaactttgt atacgaaaaa ctatatttcg ttcgatattt
    22801 ataagcatct tacaagttta atccttttaa tgcatcttta aatggattgt tctccaactc
    22861 gtcttctttc atatatttct tcatttctcg cttcgacact ttgtctttac ctttattttt
    22921 aaagcgttga tccatatgtt cttgcgtttc ggtataacca cagacacagc gatacgtcgc
    22981 ttttttacct gtaccgaatt tcgtcaatcg tttcttacat tgtgggcatc tcgcattcgt
    23041 tttcgttttt acatctttct tcgttttaca tgatggatct tgacaaacga gcatcgagcc
    23101 atttttcgta ttcactctta acataaattt gccacacgtt ggacattggg cagatgttaa
    23161 gttatcatgt ttgtattttt gctcactcga tttaatcgta tgaataatct catgcgtaaa
    23221 ctgtttcatt tcttgcataa attggtgtgc tttgtactgc cctttttcaa ttttcatcaa
    23281 tttatcttcc cattcagccg taagacgtgg tgaagttaat gcaggtggcg cgaggtctaa
    23341 aatttgtttt cctttagaag tgactttaat tttaccgtca tgactttcga tcgcattcac
    23401 attaaacaac ttatcgataa tgtctgcacg tgtcgcaacc gtaccaatcc cgcctgttga
    23461 ttttagcgtt tgtgcggact ttttatcttt taagtcgaaa aacttatcag gtctttccat
    23521 cgctttaagt aatgtacctt cattaaaata cgcaggtggt gtcgtttcat gtgccacaat
    23581 ctgtagttgt cctacatcga atgtctcacc ttgtttaaat gacactgctc gttctgtttg
    23641 cgcgcggtct tgttgtaact ttttaaaacc taactctatc ggaacttgtg attggtatgt
    23701 gaatacatgt ttaccgatgt tcacttcaac atgttgtgca cgataacgat atggtggcat
    23761 caacacttct aaatagcgct gtgcaatcat cgtataaatt ttctgctcat tcggtgataa
    23821 tgacgcaacg tccgcacgca cttctgtcgg aataatcgca tggtgatccg aaactttttg
    23881 attgttcaca aatgataatt ttttcgctaa tggttgcttt aaaatctcgc gcgcatacgg
    23941 catcaactcc gttcccatcg ttgcttgtac acgttctttc aatgtgtcca ccatatctgt
    24001 cgtcagataa ttcgaatctg tacgtggata ggtcactaat ttgtgtcgtt cgtacaattg
    24061 ttgtaacgta tttaaggttt gcttagcacc taaatgatat ttttgataag ctgcttgttg
    24121 taaatcagtt aaattaaata acggttgcgg ataaactttt ttctcttttt catgcacact
    24181 gttgacttgt gcttgcttat tttgcaatgt attcacaatg gcctctaact tttctttctg
    24241 ataaacgcgt ccgtcatgtt gataggtcat tatcacgcca tttacttctg cttctaaagt
    24301 ataatactgt tgcggtttga aatttttaat ctgttcttgg cgcattgcta caagttgaat
    24361 cgttggtgtt tgtacacgtc caagtgataa ttgcgcatca tatttcgtcg tcaatgctcg
    24421 tgtggcgtta atcccgacaa tccagtccgc ttcacttctc gctaacgcag cttcgtataa
    24481 atgttgatac gcacgcccat cttttagctt tttgaaacct tctttaattg ctttcggtgt
    24541 gacggagctg atccataatc gtttaatcgg ctttttcaca tgcgcttttt caataatcaa
    24601 acgtgcaacc agttctcctt ctcgtccagc atccgttgca ataatcaact ctttgacgtc
    24661 actgcgcttc attaaattct gaattgtatt aaattgcttc cgtgtcttac tgattacgac
    24721 ggatttcatt tgtttcggta taattggcaa atcctctaac acccattgtt gatacttttt
    24781 atcgtattgt tcaggtgttg catttgtcac tagatgcccg agcgcccatg tgacgatata
    24841 ttgttggttt tcaaaataac cttctttgcg tgaccctaca tttaaagcat tggcaatatc
    24901 acgccccact gatggctttt ctgctaatat cagtgcttta ctcatgattc attcctccat
    24961 atttcattcc aattatttat caaaaaacaa ctctttaaat cccagttgaa tgcttcacaa
    25021 gttgctttca tttcatatca aaaaaactta taattaagct aagtatatca ttaaggaggc
    25081 gcatgatgaa gatatctcaa gttactccca atccaactat tgcgtcattt attcaaacgt
    25141 atgtgtcaga acgtccttcc tatacgaata agttgccatt agatgatgaa caagcactct
    25201 ttacattttt agaagaagct gcagatgaaa cagggctatt tgtcgttgaa gaagccgatg
    25261 aaattcaaat gctgttactc tgtatttctt attctgaaga ccgttataaa gtgattggtc
    25321 cgattgtaaa aaacggttat gaaccaacga aagagacgtt caaacaactg ttcgatgcta
    25381 tcacagcaca acattaccaa ccatcgacat attattttgc atttacagct caacacgcac
    25441 tgattaaaac gtttatgaaa actattggcg catcgtacac atttacagat tatcacctgg
    25501 aaacaagtca agatttgggc gaaacacaaa acttacatca tatgattccc tatagtaaag
    25561 cgtattatcg ctattttcaa cggttacacg aagatacatt tacgcacaat gcgatgactg
    25621 caaatgaaat tgtgacatca ctagacgatc aacatgaact tgttttgtat atggcagagg
    25681 gtattttaaa agggtacttg tacttaatat atgatgagtc agagcgtcat gcagagatta
    25741 agtatttctc aagccatgca gactatcgct taaagggtat tgcgttcgac ttaattcagc
    25801 atgcgattca ccgtgcgtta acgagacctg agatcgaacg tgtctatttt aaaatccgta
    25861 gcaaaaatca caaactggtc gaacgttttc atgagctcgg ctttaacatc tcatctgaat
    25921 atcagaagtt taaaatttat aaatagtcgt cgggcatgta tcgacaggtt cgaacaatgg
    25981 tggcgaatcg agtaggagaa tagccattaa ttgactactc gtcctctcac accaccgagc
    26041 gtacggttcc gtactcggcg gttcaatatc ttgcgtaagc caactctgca agctgggcta
    26101 atggtattaa tccccacttg tagagttgtt ttgttgtaag tgcacgatga acctcgtgcg
    26161 tgtt
//
LOCUS       DANHOL010000017        25373 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.017, whole genome shotgun sequence.
ACCESSION   DANHOL010000017 DANHOL010000000
VERSION     DANHOL010000017.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 25373)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25373)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25373
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.017"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            25..882
                     /locus_tag="PTC08_000493"
     CDS             25..882
                     /locus_tag="PTC08_000493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HDK5682024.1"
                     /translation="MDVIKHLQRAMVYIEDHLLEPFDLQTLSEYVEISPYHLEQSFTM
                     IIGKTPQEYCRARRLTLAANDLIHGANRLIDLAKRYQYADANTFAHDFSDYHGVSPLQ
                     AKLKKDQLQMQERLYLKLSTTSQKPYPYRLETLGDFSLVGCSRFVPSAELEHHFIIPD
                     FLEDLKMDGTLKDIIRYNDIGPHELFVVSCPLEQGLEIFVGVPSERFPGHLEDRFLAG
                     RQYAVFNLQGEIDFVTSEAWHYIETSLQLTLPFERDALYIEIYPLDISFEDPFTKVQL
                     CVPVNIDEN"
     gene            1061..1333
                     /locus_tag="PTC08_000494"
     CDS             1061..1333
                     /locus_tag="PTC08_000494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682025.1"
                     /translation="MMQKSVILILFSTISTMFSDIFTFACGFYVLQLTGSGSLFGTYL
                     SILAIIQVLTMPIFGNMIDRHSNQKVLILGQVLSVVTLFIFFNGIS"
     gene            1647..1952
                     /locus_tag="PTC08_000495"
     CDS             1647..1952
                     /locus_tag="PTC08_000495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682026.1"
                     /translation="MAESFKYVFKNRNLSTLFLTSSVINFLEQSLTVGLPIIIVTQLG
                     YSSAHLGTMESILGVALLLTYITLNFFNMKNNLKKLSVLSKLILIVSLSLSHHQTFL"
     gene            1979..2248
                     /locus_tag="PTC08_000496"
     CDS             1979..2248
                     /locus_tag="PTC08_000496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682027.1"
                     /translation="MIIGIVLIGIAIPIDNVPFQIMIHKTIDEDYKSRVFALLQSLAT
                     GLNPLGLIFFGFVIPYSYGLVFLITGICMIFVMLYFIKNYHEHEV"
     gene            complement(2312..3715)
                     /gene="gndA"
                     /locus_tag="PTC08_000497"
     CDS             complement(2312..3715)
                     /gene="gndA"
                     /locus_tag="PTC08_000497"
                     /EC_number="1.1.1.44"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent phosphogluconate dehydrogenase"
                     /protein_id="HDK5682028.1"
                     /translation="MTQQIGVVGLAVMGKNLAWNIESRGYSVSVYNRSADKTDLMVEE
                     SKGKNIVPTYSVEEFVNSLEKPRKILLMVKAGEATDKTIDSLLPLLDDDDILIDGGNT
                     NYLDTIRRNKALAESGINFIGMGVSGGEVGALTGPSLMPGGQEAAYHKVSDILESISA
                     KAKDGKPCVTYIGPNGAGHYVKMVHNGIEYADMQLIAESYIMMKDLLGMSHEEISETF
                     KSWNAGELESYLIEITGDIFTRLDEDGAPLVEKIMDKAGQKGTGKWTSINALELGAPL
                     TIITESVFARFISSLKDQRVNASKVLNGPSAAFDGNKEEFLEKIRRALYMSKICSYAQ
                     GFDQMKTASEINEWNLQLGDLAMIWREGCIIRAQFLQKIKDAYDNDNNLQNLLLDGYF
                     KDIVTEYQSALRDVVATGIQNGVALPGFSASINYYDSYRTENLPANLIQAQRDYFGAH
                     TYQRKDQEGTFHTQWTK"
     gene            complement(3789..4904)
                     /locus_tag="PTC08_000498"
     CDS             complement(3789..4904)
                     /locus_tag="PTC08_000498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HDK5682029.1"
                     /translation="MLNKDRLIETFLELVQIDSETGHEDIIQPILKDKFESLGLSVVE
                     DNAKATTGFGANNLICTLPANRENKDKIYFTSHMDTVEPGRNVKPIIKEDGFIYSDGT
                     TVLGADDKAGLAVIFEVLHIIHEQQLPHGQIQFVITVGEESGLVGAKALRKEDLDADY
                     GYAIDSAVPVGSITIGAPYQMKVNATIHGKKAHASTPNEGISAINIAAQAISQMKLGQ
                     IDHETTANIGKFQGGGPTNVITDLVNIWAEARSHAKDKLDAQVQHMKETFEHAAAQHH
                     CHAEVETELSYPGFHVESDERVYQVAEQAAKALGFEMQADVGGGGSDGNIINHLGIPT
                     VILGVGYEKIHTTDERISKQSLYDLTNFVLKIIEMNA"
     gene            5075..5176
                     /gene="prli42"
                     /locus_tag="PTC08_000499"
     CDS             5075..5176
                     /gene="prli42"
                     /locus_tag="PTC08_000499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stressosome-associated protein Prli42"
                     /protein_id="HDK5682030.1"
                     /translation="MLNKKIRKVLIIVMLVAIVLALILTGIAPLLSM"
     gene            complement(5233..6210)
                     /locus_tag="PTC08_000500"
     CDS             complement(5233..6210)
                     /locus_tag="PTC08_000500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002476807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic acid exporter family protein"
                     /protein_id="HDK5682031.1"
                     /translation="MLRLNPYRIGLRTIKTAVGMALGVIIAQLLGLDNYASSAILVVL
                     CIKDTKIHSVHAIISRFISCLIAIGFGWAIFPLLGQHAWVLGLIVLFFIPVTVMINMQ
                     EGVVTSIVILLHFFNADVIDFSLVVNEVLLIIVGLAIAFTMNTIMPNLDHQLSKYKKE
                     IEFQFKSIFHTFSSACAMHNNRPDVTFNSLAHTIQEAKSIAFKDVKNHFVRNENSYYH
                     YFDMREDQLEILKRIKNHIRHINANDVMSAHVAQLFHEMAENVNENNYTALRLHTLYQ
                     IRLEIDQLPLPQTHEELLTRSSMIQILYDTEEYLTIKAKFGSLKMHHEI"
     gene            complement(6221..6658)
                     /locus_tag="PTC08_000501"
     CDS             complement(6221..6658)
                     /locus_tag="PTC08_000501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BrxA/BrxB family bacilliredoxin"
                     /protein_id="HDK5682032.1"
                     /translation="MDMNFDLYMNNIVKQARSEMDHAGYEQLATEEDVDRVFKQDGTT
                     LVMINSVCGCAGGIARPAATHALHYDVLPDRLVTVFAGQDKEATQRARDYFEGYAPSS
                     PSFALMKDGKITEMIERHQIEGHDTMDVITQLQALFDRYCNAK"
     gene            complement(6883..8157)
                     /locus_tag="PTC08_000502"
     CDS             complement(6883..8157)
                     /locus_tag="PTC08_000502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000406833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxo acid dehydrogenase subunit E2"
                     /protein_id="HDK5682033.1"
                     /translation="MEIKMPKLGESVHEGTIEQWLVQEGDRVEEYDPLCEVITDKVTA
                     EVPSSYAGTIKKIIAAAGDTVEVGSVICEMEVEGDTDEATENVAPEADATTTEQTNVP
                     PAPPSTENQSKNNGRFSPVVFRLASENNIDLSTVTGTGFEGRVTKKDIERAIEQGTTT
                     PKENAVPQETVERIAPTSPVAKQNHHTLTTSDRDSVIPVNGVRRQIANKMVQSVHEIP
                     HAWMAVEVDATELTKTRAHYKNQFKAQEGYNLTFFAFFIKAVAEALKKYPLLNSTWQE
                     DEIVVHSDINISIAVAHENKLFVPVIRHADEKSIKGIAREIHELAQKARQNQLSYEDM
                     QGGTFTVNNTGTFGSVHSMGIINHPQAAILQVESIVKRPVVIDDMIAIRSMVNLCLSL
                     DHRILDGLQAGQFLNEVKQRIEAFTVEHTHVY"
     gene            complement(8170..9153)
                     /locus_tag="PTC08_000503"
     CDS             complement(8170..9153)
                     /locus_tag="PTC08_000503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-ketoacid dehydrogenase subunit beta"
                     /protein_id="HDK5682034.1"
                     /translation="MAKISYLEAIRQALDVALEKDAQTMILGEDVGKKGGVFGVTAGL
                     QEKYGVYRVLDTPLAESNIVGSAIGAAMMGKRPFAEIQFAEYILPATNQIMSEAAKMR
                     YRSNNDWQAPLTIRAPFGGGIHGALYHSQSIESVFTSTPGLTVVIPSTPYDAKGLLLA
                     SIASNDPVLFFEHKKAYRLLKEEVPEGYYTVPLGKADVKRQGSDITVFSYGLAVNYCL
                     QAADLLKGEAIDVEVVDLRTVYPLDQQTIIECAKKTGKCLLVTEDNKEGSVMSEVAAI
                     IAENCLFDLDAPVMRLAGPDVPAMPFSPPLEDEFMINPDKIKNKMRELAQF"
     gene            complement(9146..10144)
                     /locus_tag="PTC08_000504"
     CDS             complement(9146..10144)
                     /locus_tag="PTC08_000504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent dehydrogenase
                     E1 component subunit alpha"
                     /protein_id="HDK5682035.1"
                     /translation="MKDYQSVGLEIEDLKNMYRAMDLGRKLDERMWLLNRAGKIPFVI
                     SCQGQEATQIGTAYALQKGDITSPYYRDLALVTYLGMTPLETMLSAFGKRDDISSGGK
                     QMPSHFSKKEVGIMSQGSSVATQILHAVGAALTFKMDGKSQIALTTLGEGSSNQGDFH
                     EGLNFAGVHNLPFICLIENNKYAISVSKEFQYGAKYLSDRAKGYGMFGETIDGNDPIA
                     VYGAIKKARERAVNGEGASLIEAMCTRLTAHSSDDDDRYRTVEEKNADKENDCNLKFK
                     QYLIDQSLVDETWFESIEKENQQWVHQATKEAEAAPYPDPSETYLHVYEEGGRQHG"
     gene            complement(10166..11584)
                     /gene="lpdA"
                     /locus_tag="PTC08_000505"
     CDS             complement(10166..11584)
                     /gene="lpdA"
                     /locus_tag="PTC08_000505"
                     /EC_number="1.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HDK5682036.1"
                     /translation="MTKEKYDIVILGGGIAGYSAAIRASQLGKSVAIVEKSKMGGTCL
                     HQGCIPTKSFLKSAEVFQYVQHADDFGVTAEQPTFNFSKVMERKNRIVDTMYQGLQGL
                     MKRHKIDVFHGVGRLMGASIFTPQSGTVSVEYEDGTSELLPNDYVLIATGSKPMALPF
                     LPFDQQQIYSSNDMMTLETLPQSITIIGGGVIGLEFASFFSSVGVTVHIIEAGPRILP
                     TENAQISQLIQKQLEEQGVNFHINTVLKGDDIQQSDEEVTFNLENPFSTEKVLVAIGR
                     QVNTADLGLDNTKVVLNDKQMIETNEYMQTADTHIYAAGDVIGHLQLAHVGAREGVIA
                     VEHMFNENPLPVDYDLMPRCVYTSPEIASIGVNQETAKQRGLKFEVMKAPFKANGKAT
                     ITTSSISEGFAELLFDQASGSLIGASLIGPHVTELINELSVLQFMNGSALELGLSTHA
                     HPSISELLMELGLKSNHQSIHI"
     gene            complement(11595..12653)
                     /gene="buk"
                     /locus_tag="PTC08_000506"
     CDS             complement(11595..12653)
                     /gene="buk"
                     /locus_tag="PTC08_000506"
                     /EC_number="2.7.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="butyrate kinase"
                     /protein_id="HDK5682037.1"
                     /translation="MTTTLVLNLGSTSSKYAIYENDECKVNENISHTEAILKQPLIDQ
                     ESLRQQLIEDEIESQGYQLNQIDAIACRGGLLKPLEGGTYSVNEAMYDDLKSFKYGAH
                     ASNLSAMIGYQLGQKYHIPVFTTDPVVVDELIDEVRHTGVPSIQRRSIFHALNQKAMA
                     RRYAALVNRAYENMNVIVIHMGGGISIGAHEKGRVIDVNEALYGEGPMAMDRSGSIPN
                     DLLVQYMDKHQLSADEIKVQLSRESGLKAYFHTSDLREIMAKYEQDENVKLIIDTMVI
                     QIAKVIGERAVVLKGHVDQIIFTGGMSHSVQLMDQLAKYIEWIAPISVFPGEHELITL
                     AERAQLALNQQIKIEIYQ"
     gene            complement(13227..14120)
                     /locus_tag="PTC08_000507"
     CDS             complement(13227..14120)
                     /locus_tag="PTC08_000507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate butyryltransferase"
                     /protein_id="HDK5682038.1"
                     /translation="MNFTDLLKEPQALTGTIAIVNATDEPLIRVIIEVLKQTEADFKL
                     YNNQDVAEIIRSFELSADFLKRIHIQTFDTEEAAIEGCLNDLHHGKAQILMKGQISTA
                     KILSAVLKRNAQGTKPFLNHVALCEIPSYHKLLMISDVALNIAPTEEEMKAIIQNLVD
                     FSKRLQYQQLHIALLSSVEKVSPKIPSTVQAERLSEYYQSHPIEPHVHVEGPFALDNA
                     IDKKSAIQKGIHSKVAGNADVLIVPGLDAGNVLYKSLTYFGRAKVASLILGAHFPIVL
                     TSRADSIENKINSILVALKVG"
     gene            complement(14127..15809)
                     /gene="recN"
                     /locus_tag="PTC08_000508"
     CDS             complement(14127..15809)
                     /gene="recN"
                     /locus_tag="PTC08_000508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecN"
                     /protein_id="HDK5682039.1"
                     /translation="MLQSLSIKQFAIIDTLDIQFSDGLTVLSGETGAGKSIIIDAIGQ
                     LIGMRASSEFVRHGEKKAIIEGIFDIDDAKDAIRQLETLGIDINEDFLIVKREIFSSG
                     KSICRINNQTVTLQDLRQVMQSLLDIHGQHETQSLLKQKYHVELLDRYADGEYIAELQ
                     QYAQSYEQHQEKIKELEALESADQALLQRLDLMKFQYDELKEAQLKEGEIEQLEIDIK
                     RIQNSENLSLALNAAYVTLTDEHAITDRLYTLSSELQNVNQILPETFEKLKEEVDQFY
                     YTLEDAKHQIYEEINQTEFDEQYLNELESRMNLLNNLKRKYGKDISDLRIYQEKIADE
                     INKIENYEESTSKLREEIQQLSQQVQEDGEKLTKARRIVARQLRDRIVNEIQYLQMKD
                     ANLEISFKPYETPQKDGLERIEFLISPNKGEPLKSLNKIASGGELSRIMLALKSIFVR
                     AHGQTAILFDEVDSGVSGQAAQKMAEKMKDIASVIQVICISHLPQVASMSDHHLYISK
                     HEKDDRTTTTVRELTGDARIDEIARMISGATVTELTRQNAKEMIEQNQKHKG"
     gene            complement(15823..16275)
                     /gene="argR"
                     /locus_tag="PTC08_000509"
     CDS             complement(15823..16275)
                     /gene="argR"
                     /locus_tag="PTC08_000509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator ArgR"
                     /protein_id="HDK5682040.1"
                     /translation="MPKKSVRHIKIREIISNEQIETQDELVKRLNDYDMNVTQATVSR
                     DIKELQLIKVPAPSGQYIYSLPNDRRYHPLEKLGRYLMDSFVKIDSANNLLVLKTLPG
                     NAQSIGAILDQIDWEEVLGTICGDDTCLIICRDNPSADEIKERIFNML"
     gene            complement(16560..18428)
                     /locus_tag="PTC08_000510"
     CDS             complement(16560..18428)
                     /locus_tag="PTC08_000510"
                     /EC_number="2.2.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase"
                     /protein_id="HDK5682041.1"
                     /translation="MDVRNIQNPSFLKSLSVKELEALSHDVRQFLIQTCAVTGGHIGA
                     NLGVVELTIALHKHFNSPEDKIIWDVGHQSYIHKILTGRGHQFETLRQYRGLCGFPKL
                     KESDHDVWEAGHSSTSLSAAMGMAKARDILGKKNHIVPVIGDGALTGGMALEALNNIG
                     HDRTNMTIILNDNEMSIAPNVGAMHNMLGRIRMNQGYNRLKFDAESILSRLPGGSRLR
                     ESADRIKDSLKYLVVDGAFFEELGIRYIGPVDGHSFEELENALAAADSINKPVLIHVV
                     TKKGKGYHPAENDKIGTWHGLGPYKLETGEQIKGQTQGPSWSQLMSDEILSYAKKDRR
                     VVAITPAMPVGSKLTKFQSELPEQFFDVGIAEQHAVTMAAGLAIEGMKPYVAIYSTFL
                     QRAYDQVLHDVDRQNLNVIFGVDRSGLVGADGETHQGVFDVGFLTQFPNMIVTMPKDE
                     NEAKNLVYTAMHHAQGPIAIRYPRGNGLGVEITDKREHLPIGTWEDLTEGQDVALISY
                     GPTLATLVEVAKTLAEQGIRARVINARYIKPMDTTVLGDLGAKNTPVVTVEEAMLNGG
                     LGSQIANYFTDHGYTNRIKRLGIDDTYIEHGDVEQILEDLGLTHDPLVHTIQQFLD"
     gene            complement(18498..19379)
                     /locus_tag="PTC08_000511"
     CDS             complement(18498..19379)
                     /locus_tag="PTC08_000511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HDK5682042.1"
                     /translation="MNQNLNELLEQFNGHLNHAIEDSQLGTSLEQSMRYSLEAGGKRI
                     RPLLMLATIKMLDHQKLESGMHVALALEMIHTYSLIHDDLPAMDDDDLRRGKPTNHTV
                     YGEWLAILAGDALLTKAFEKIALTPHIDAQIKVALIEKISQASGHQGMVGGQTLDMQS
                     ENQQISLEKLESIHIHKTGALIQFAIEAATIITSIRQTTAQQLIQFSQHLGVIFQIKD
                     DLLDVYGNEAKLGKPVGSDVTNHKSTYVTLLGEKGAEQELQAHIQKAEAILTSLSTEF
                     DTTDLNYLLTLFYQRQN"
     gene            complement(19360..19584)
                     /locus_tag="PTC08_000512"
     CDS             complement(19360..19584)
                     /locus_tag="PTC08_000512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002475215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII small subunit"
                     /protein_id="HDK5682043.1"
                     /translation="MTTENKSFEEMMKELENIVNQLDHDTISLEKSLELYQQGIALSK
                     SCEKTLSDAEKKVAELMDKEADESNESKSE"
     gene            complement(19568..20914)
                     /locus_tag="PTC08_000513"
     CDS             complement(19568..20914)
                     /locus_tag="PTC08_000513"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HDK5682044.1"
                     /translation="MEKYLTISALTKYIKYKFDQDPHLQSVYIKGELSNFKRHSSGHL
                     YFAVKDENSVIAAMMFKTQANQLDFDPKEGDQVLIEARVSVYERRGNYQIYVNHMQLD
                     GVGNLYQKFEQLKNKLMKEGYFDPAHKKPIPKYPQKIAILTASTGAAIRDIQNTLNNR
                     YPLAQQIKISTLVQGAQAKADIIEKLQSADQLGADVIILGRGGGSIEDLWNFNEEDVV
                     KAIFSCQTPVISAVGHETDTTLSDFVADLRAATPTQAAMLATPDKQELKQVLYQTRAY
                     LNRYMKQHLKHTSQQLQQLQSYYKLKQPGLLYEQQIQKRDELDRALHQSMQLRLQHEQ
                     QRLAMLQQRIRIKYFYDNVQRQKQASIDLSSQLHKQIQRILTSKKQIFQHQLLSLDNL
                     SPTKTMLRGYSIVKKDDEVITSSHDIHEGERIEVTMKDGALDARIEKVRWQNDDRK"
     gene            complement(20923..21315)
                     /gene="nusB"
                     /locus_tag="PTC08_000514"
     CDS             complement(20923..21315)
                     /gene="nusB"
                     /locus_tag="PTC08_000514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016425154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination factor NusB"
                     /protein_id="HDK5682045.1"
                     /translation="MSRKQARSQAFQTLFQLEMKNTELTIDEAISFIKEDYPDLDFDF
                     IKWLVSGVKDHQHVLDETISPHLNGWTIARLLKTDRIILRMATFEMNHSDTPEKVIIN
                     EAVELAKQFSDDDHYKFINGVLSHIKRN"
     gene            complement(21336..21710)
                     /locus_tag="PTC08_000515"
     CDS             complement(21336..21710)
                     /locus_tag="PTC08_000515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp23/Gls24 family envelope stress response
                     protein"
                     /protein_id="HDK5682046.1"
                     /translation="MAKPIEHFNPNLGSVEIEPEVISVIASIAVSEVKGVEGVFPDLK
                     NSTLERFGRKNLSKGVKITTKDNEITIDVYCSLNYGVKVSETALKVQESIHSALRTMT
                     ALTPQQINVHITHIEMAKNNRD"
     gene            complement(21731..23086)
                     /gene="accC"
                     /locus_tag="PTC08_000516"
     CDS             complement(21731..23086)
                     /gene="accC"
                     /locus_tag="PTC08_000516"
                     /EC_number="6.3.4.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HDK5682047.1"
                     /translation="MRKILIANRGEIAVRIIRACHELGIQTVAIYSEGDKDALHTQLA
                     DEAYCVGPKQSKDSYLNIPNILSIATSTGCDGIHPGYGFLAENGDFAELCEAVQLKFI
                     GPSYESIQKMGIKDIAKEEMKRANVPVVPGSEGLVNTIEDAIQTANSIGYPVIIKATA
                     GGGGKGIRIARNEEELINGYKMTQQEAETAFGNGGLYLEKFIENFRHIEIQILGDEHG
                     NVIHLGERDCTIQRRMQKLVEESPSPILTEEKRKEMGDAAVRAAKAVNYFNAGTIEFI
                     YDLDEDQFYFMEMNTRIQVEHPVTEMVTGVDLVKQQIKVAMGEKLPYTQDDIQIQGHA
                     IEFRINAENPYKNFMPSPGKVEQYLTPGGFGVRIDSACYTNYVIPPYYDSMVAKLIVH
                     QPTREEAIMSGLRALSEFVVLGIDTTIPFHIRLLNHPVFNQGFFSTKFLEIYDIMNED
                     H"
     gene            complement(23088..23549)
                     /gene="accB"
                     /locus_tag="PTC08_000517"
     CDS             complement(23088..23549)
                     /gene="accB"
                     /locus_tag="PTC08_000517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein"
                     /protein_id="HDK5682048.1"
                     /translation="MNFKEIKELINILDNSNLTEISIEDKGTTINLKKEKEIVTQQIS
                     APQQMVAPTVTAEPVQVNAASVDTPTTEADTSLKTITAPMVGTFYKSPSPEESAYVQI
                     GDQVTPDTTVCILEAMKLFNEIQAEVAGEIVEILVEDGQMVEYGQALFKVK"
     gene            complement(23882..24439)
                     /gene="efp"
                     /locus_tag="PTC08_000518"
     CDS             complement(23882..24439)
                     /gene="efp"
                     /locus_tag="PTC08_000518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000626504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HDK5682049.1"
                     /translation="MISVNDFKTGLTISVDNGIWKVIEFQHVKPGKGSAFVRSKLRNL
                     RTGAIQEKTFRAGEKVEPAMIENRRMQYLYADGDNHVFMDNETFEQTELSTDYLEYEL
                     KFLKANMDVHIQTYQGETIGVELPKTVELEVTETEPGIKGDTATGATKSATVETGYTL
                     NVPLFVNEGDVLVINTTDGSYVSRG"
     gene            complement(24458..>25373)
                     /locus_tag="PTC08_000519"
     CDS             complement(24458..>25373)
                     /locus_tag="PTC08_000519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="aminopeptidase P family protein"
                     /protein_id="HDK5682050.1"
                     /translation="DFRYTDQAQQQATEFEVILQKGDLFSALTEQFKTLNLQNIGFEG
                     HLVAYDSFLKLNQGRHDLISIGQAIETIRQTKDEDEIKAIQKAAQIVDEAYEYILTVV
                     KPGMTEKEVKAHLESKMLHLGADDTSFDTIVASGIRGAMPHGVASDKVIQSGEMVTLD
                     FGAYYNGYCSDITRTFAVGQPSEEMVKIYNIVLKSQEAAIAAIRPGMTGKEMDSIARD
                     IITEAGYGKHFGHSLGHGIGLDIHELPGLSQKSDVVLEKNHCVTIEPGIYVEGLGGVR
                     IEDDILITENGGERFTNCIKDLIILKEE"
BASE COUNT         7284 a         5088 c         4404 g         8597 t
ORIGIN      
        1 taagagttat aaggagtgaa aattttggac gtcattaaac atttacaacg cgcaatggtt
       61 tatattgaag accatttatt agaaccattc gacttacaaa ctttaagtga atacgttgaa
      121 atttctcctt atcatttaga acaatctttt acgatgatta ttggaaaaac gcctcaagaa
      181 tattgtcgcg cacgcagact gacacttgca gctaatgatt taatccacgg tgcgaatcgt
      241 ttgattgatc ttgcaaaacg ttatcagtat gcggatgcga atacatttgc acacgacttt
      301 agtgattatc atggggtgtc accgttacag gcaaagctaa aaaaagatca acttcaaatg
      361 caggaacgac tttatttaaa attatcgaca acttcgcaaa agccctaccc ttatcgttta
      421 gaaacattag gcgatttttc gttagtcggt tgttctcgtt ttgtaccatc agcggaatta
      481 gaacatcatt tcatcattcc ggattttctt gaagatttaa aaatggacgg cacgctaaaa
      541 gatatcatcc gctataatga tatcggaccg catgaattgt ttgtggtcag ttgcccgctt
      601 gaacaaggac ttgaaatctt tgtcggtgtc ccaagtgaac gttttcctgg tcatttagaa
      661 gatcgctttt tagcaggacg tcaatacgcc gtgtttaatt tacaaggtga aattgatttt
      721 gttacaagtg aggcttggca ctacattgaa acaagtttac aattgacttt accatttgaa
      781 cgcgatgcct tatatattga gatttatcca ctcgatattt cgttcgagga tccatttaca
      841 aaagtgcaat tatgtgttcc tgtgaatatt gatgaaaatt aaagctatag caagcacaat
      901 cgttgagatg cgttgtttca gtgacggatg agaaacgatt gtgcttattt tgtgtgtagt
      961 tagatgggaa aataaacaac tcacatatat ttctgaatat tcactcttta aatttattcc
     1021 cgtatcgcat atgatacaaa taaggaatga ggaggaaaat atgatgcaga agtcagttat
     1081 tcttattttg tttagtacca tttcaactat gttttcagac atcttcactt ttgcatgcgg
     1141 cttttatgta ttacaactaa ccggttcagg cagtctattt ggtacttatt tatcgattct
     1201 agctattatt caagtattga ctatgccgat attcggaaat atgattgatc gacattcgaa
     1261 tcaaaaagtg ctgattttag ggcaagtttt aagtgtcgtt acgctattca tttttttcaa
     1321 tggcatatca tgaagaaatt gcgagtattt tttgggtcat gattgtttta gcaattatag
     1381 atctgattat caaaaccatt gtctcatcaa acttgtagta catcacacga gactattttg
     1441 agagagttgt cacgactaga caaaacattc aatctgcaac gatgataacg gtccctattg
     1501 tggcaggatt tttagtaact cttgtccaca ttaatacttt agcgctattg aatagcttca
     1561 ctgaatttgt tggcttgatt ctgattttta tgttgcgttt taaaccagcg aatgcggtga
     1621 gtaaaagcat aaaatttaca gaggggatgg cagaaagttt taaatatgtc tttaaaaatc
     1681 ggaacttgtc gacactcttt ttaacatcaa gcgtcattaa ctttttagaa caatctttaa
     1741 ctgtcggact tccaattatt atcgtgacac aacttggcta ttcatctgca catttaggaa
     1801 cgatggaaag tattttagga gtggcacttt tattaacata cattacattg aatttcttta
     1861 acatgaaaaa taatttaaaa aaattgtctg tgctatctaa gctcatttta attgtatcgc
     1921 tttcgttatc gcatcatcaa acttttttat agcgatatcg ttttgggcgt atattgtgat
     1981 gatcattggt atcgtattga ttggcattgc cattcctatt gacaatgttc catttcaaat
     2041 tatgatacac aaaacgatag atgaagatta taaatcacgc gtattcgctt tattgcaaag
     2101 tttggccacg ggactcaatc cactcgggct tattttcttt ggatttgtca taccgtatag
     2161 ttacggtttg gtttttctaa tcactggaat atgtatgatt tttgtcatgt tgtattttat
     2221 taaaaattat catgagcacg aggtgtagtc ataaagatga aatgaaaaga ggccaggaat
     2281 gcgcctagcc tctttcatat ttgagaaggt cttatttagt ccattgtgta tggaaagtac
     2341 cttcttgatc tttacgttgg tatgtgtgtg caccgaaata gtcacgttgc gcttgaatta
     2401 agtttgctgg taagttttct gtacggtagc tgtcgtagta gttgatactt gctgagaaac
     2461 caggaagtgc cacaccgttt tggatacccg tagcaacaac atcgcgaagt gcagattgat
     2521 attcagtcac gatatccttg aagtaaccgt ctaataaaag gttttgcaag ttgttgtcgt
     2581 tgtcgtatgc atctttaatt ttttgtaaga attgcgcacg aatgatacaa ccttctctcc
     2641 aaatcatcgc taaatcacct aattgaaggt tccattcatt gatttcactt gctgttttca
     2701 tttgatcgaa accttgcgcg tatgaacaaa ttttactcat gtacagtgcg cggcgaattt
     2761 tttcaaggaa ttcttctttg ttaccatcaa atgcagcaga aggcccgttt aacacttttg
     2821 aagcattcac acgttgatct tttaaagaag aaatgaaacg tgcaaataca gattccgtaa
     2881 tgatagttaa tggcgcacct aattctaatg cgttaataga tgtccattta cctgtacctt
     2941 tttgacccgc tttgtccatg attttttcta caagtggtgc gccatcctca tcaagtcttg
     3001 tgaaaatgtc acctgtaatt tcgataaggt aactttctaa ttctccagca ttccatgatt
     3061 tgaatgtttc agagatttcc tcatgtgaca tgcctaataa atctttcatc ataatataac
     3121 tttctgcgat taattgcata tctgcatatt cgataccgtt gtgtaccatt ttgacatagt
     3181 gacccgcacc attaggccca atgtatgtga cacatggttt accgtctttc gccttagctg
     3241 agatagattc taagatgtct gacactttat gataagcagc ttcttgacca cctggcatta
     3301 atgaaggacc tgttaacgca ccaacttcac cgccagaaac ccccatacca atgaagttaa
     3361 tgccactttc agccaaagct ttattacggc gaatcgtatc gaggtagttt gtgttaccac
     3421 cgtcgattaa aatatcatca tcgtctaata aaggtaataa gctgtcaatg gttttatctg
     3481 tcgcttctcc tgcttttacc attaacaaaa ttttacgtgg tttttctaaa gaatttacaa
     3541 actcttctac tgaataagtc ggtacaatgt ttttcccctt agattcttca accattaaat
     3601 ctgtcttatc tgcagaacgg ttgtacacag atacactgta tcctcttgat tcaatattcc
     3661 aagctaggtt tttacccatt acggctaaac caactacacc gatttgttgt gtcattatac
     3721 ttaacctctc ttattataaa ttatggcctt attgtatcac atattagcgg atgaagcctt
     3781 tgattagctt acgcattcat ttcaatgatt tttaatacaa aatttgttaa atcatataac
     3841 gattgtttgg aaatacgttc atctgttgta tgaatttttt catagcccac gcctaaaatg
     3901 actgttggga tgccaagatg attaataata ttaccatcag aaccgccacc accgacatct
     3961 gcttgcatct caaaacctaa tgcctttgca gcttgttcag ccacttggta gacacgttca
     4021 tccgattcaa catgaaagcc tggataagat aactcagttt caacttcagc atgacagtga
     4081 tgttgtgctg ccgcatgttc aaatgtttct ttcatatgtt gaacttgtgc atcgagttta
     4141 tctttagcat gtgagcgtgc ttctgcccaa atattcacta aatctgttat aacatttgtc
     4201 ggccccccac cttggaattt accgatatta gcagtcgttt catgatcgat ttggcccagt
     4261 ttcatttgac taatcgcttg agcagcaata ttaatcgcgc taatcccttc atttggtgta
     4321 ctggcatgcg cttttttacc atggatcgtc gcattaactt tcatctgata cggtgcacca
     4381 atcgtgatac tgcctaccgg tactgctgag tcaatcgcat agccgtaatc tgcatctaaa
     4441 tcttctttac gtaaagcttt tgcgccaact aatccagact cttcacccac tgtaataacg
     4501 aattgaattt gaccatgggg taactgttgt tcatgaatga tatggagcac ttcaaaaatg
     4561 acagctaatc ctgctttatc gtcagcaccg agtacggttg taccatctga ataaatgaaa
     4621 ccatcttctt taatgattgg tttcacattg cgacccggtt ccacagtatc catatgactc
     4681 gtgaaataaa ttttatcttt attttctcga tttgcaggta atgtacaaat cagattatta
     4741 gctccaaaac ctgtcgttgc tttcgcgtta tcttctacaa ctgataggcc gagcgattca
     4801 aacttgtctt tcagtatggg ttgaataatg tcttcatgtc ctgtttcaga atcgatttgc
     4861 actaattcta aaaatgtttc aattaatcta tctttattta gcataccgtc accttccctt
     4921 atgttctata ctcattttat cgaactttgg atagattgca aaaaagacat atccatcatc
     4981 ctttttataa gaacttttgg cttttatttg aatgaatgat ataattcagt cattgtacat
     5041 gagattatta taggttattt ggaggcttat catcgtgtta aacaagaaaa taagaaaagt
     5101 gctcatcatt gtgatgcttg ttgccatcgt acttgcgttg attttaacag gtatcgcacc
     5161 attattgagc atgtaacaga aatcaaaaaa caggcaagga tttaaactgt cctcgcctgt
     5221 ttttgtatac aattaaattt catgatgcat tttcagtgaa ccaaattttg ctttaatcgt
     5281 taaatattcc tcagtatcat acaaaatttg aatcatactt gaacgtgtca acaactcttc
     5341 atgtgtctga ggtaaaggca gttgatcgat ttcaagacga atttgatata atgtgtgtaa
     5401 acgtaatgca gtatagttat tttcattgac attttctgcc atttcatgaa ataactgtgc
     5461 cacatgtgca ctcatgacat catttgcatt aatgtgcctg atgtgatttt taatgcgctt
     5521 aagtatttct aactgatctt cacgcatgtc aaaataatga tagtagctat tttcattccg
     5581 aacaaaatga tttttaacat ctttgaatgc aattgatttc gcctcttgaa ttgtatgtgc
     5641 caatgaatta aacgtcacat caggtcggtt attatgcatc gcacaggctg aactaaacgt
     5701 atggaaaatg cttttgaatt gaaactcaat ttccttttta tatttagata attggtggtc
     5761 caaatttggc atgattgtat tcatcgtaaa cgcaatagct aacccaacga taatcagcaa
     5821 tacttcattg acgactaatg aaaaatcgat gacatcagca ttgaaaaaat ggagtaagat
     5881 gacaatgctt gttacgacac cttcttgcat attaatcatc acagtaacag gaatgaaaaa
     5941 gagaacaatt aaaccaagta cccaggcgtg ttgccctaat agcggaaaaa tagcccaacc
     6001 aaagccgatt gcaattaaac aggatataaa acgagaaata atcgcgtgaa cagagtgtat
     6061 tttcgtatct ttaatacata atacaaccaa aatggcacta gaagcgtaat tatccaaccc
     6121 tagtagttgt gcgatgatta cacctagtgc catgccgaca gcggtcttta tcgttctcaa
     6181 tccgatgcga tatggattta aacgcaacat gatgagcacc ttacttagcg ttacaataac
     6241 ggtcaaataa agcttgaagt tgcgtaatta cgtccattgt atcgtggcct tcgatttggt
     6301 gacgttcgat catttcagta attttgccgt ctttcatgag cgcaaatgaa gggcttgatg
     6361 gtgcataacc ttcaaaataa tcacgtgcac gttgcgttgc ttccttatct tgacctgcaa
     6421 atactgtcac aagacgatcg ggtaatacat catagtgtaa agcgtgtgtc gcagctggac
     6481 gtgcaatacc ccctgcacaa ccacatactg agttgatcat gactaaagtt gtgccgtctt
     6541 gtttaaatac tcgatcaaca tcttcttcag ttgctaattg ttcgtaaccc gcatggtcca
     6601 tttcagaacg ggcttgtttg acgatattat tcatatataa atcgaagttc atatccatgt
     6661 gaacattcct ccatcataag tatttcaatt aattacattt tactaaaggt catgcacaac
     6721 tgcaatcatt cggcaacatc tggccagaaa aactaggatt tggaccgtag tttgcgtgac
     6781 gagtttaatt ttaacgaagc acgccaaacc attagaaaag gctaggaaaa catcccagcc
     6841 actcccttat tcatagatta ttatccaact ttttcacaca aattaataaa cgtgtgtatg
     6901 ttcaacggta aacgcttcaa tacgttgttt cacttcattt aaaaattggc cggcttgtaa
     6961 accatctaaa atacggtgat cgagtgataa acataggttc accatagaac gaatcgcaat
     7021 catgtcatca atgacaactg gtcttttaac aatagattca acttgtaaaa tggctgcttg
     7081 cggatgatta atgatgccca tagaatgtac cgaaccaaaa gttcccgtat tatttacagt
     7141 gaaagtaccg ccttgcatat cttcatacga aagttgattt tgtcgtgctt tttgtgcgag
     7201 ttcgtgaatt tctcgagcaa tgcctttaat agatttttca tcggcatgac gaatgactgg
     7261 aacaaacaat ttattttcat gcgcaacagc gattgaaata ttgatgtcag aatgtacaac
     7321 aatctcatct tcttgccatg tgctgttaag taatggatat tttttaagcg cttctgctac
     7381 agctttaatg aaaaatgcaa agaatgttaa attatatcct tcttgcgctt taaattgatt
     7441 tttgtaatgc gcgcgagttt ttgttaattc tgtagcatcc acttctacag ccatccaagc
     7501 atgtggaatt tcatgaacac tttgaaccat tttgttcgca atttgacggc gcacgccatt
     7561 gacaggaatc acgctatcac gatcgcttgt tgttaatgta tggtgatttt gcttggctac
     7621 aggtgacgtt ggtgcaatgc gctctactgt ctcttgaggt acagcatttt cttttggtgt
     7681 agtagtacct tgttcaatcg cacgttcaat atctttttta gtgacacggc cttcaaatcc
     7741 tgtccctgtt actgttgata aatcaatatt gttttcggaa gccaatctaa atacaacagg
     7801 tgaaaaacgg ccattatttt tagattgatt ttctgttgaa ggtggtgctg gcggcacatt
     7861 tgtttgttct gtagttgtcg catcagcttc tggagctaca ttttcagttg cttcgtcagt
     7921 atcaccttcc acttccattt cgcatatgac agaaccgact tcaactgtgt caccagcagc
     7981 agcaataatt tttttaatcg ttcctgcgta tgatgagggc acttcagctg tcactttatc
     8041 cgtaatcact tcacacaatg ggtcatattc ttcaacacgg tccccttctt gaacgagcca
     8101 ctgttcaatt gtaccttcat gcacactttc cccgagttta ggcattttga tttccatgag
     8161 tgcacctcct taaaattgtg ctaattcacg cattttattt ttaattttat ccgggttaat
     8221 cataaattca tcttctaacg gtggtgaaaa tggcatcgct ggcacatctg gacccgccaa
     8281 tcgcattacg ggtgcatcta aatcaaataa acaattttca gcaataatcg cggcaacttc
     8341 tgacatgacg ctaccttctt tattgtcttc tgtgactaac aaacatttac ctgtcttttt
     8401 cgcgcattca ataatcgttt gttgatcgag cggatagaca gtacgcaaat caaccacttc
     8461 gacgtcgata gcttcacctt ttaataaatc tgctgcttga agacaatagt tcactgctag
     8521 accgtatgaa aatactgtga tatcgctacc ttgtcgtttg acatcagctt taccaagcgg
     8581 cacagtgtaa tatccttctg gaacttcttc ttttagtaag cgatatgcct ttttatgctc
     8641 aaagaaaagc acagggtcat ttgatgcaat tgacgctaaa agtaagcctt ttgcatcata
     8701 aggtgtggat ggaatgacaa cagttaagcc tggagtagac gtaaatacac tttcgatact
     8761 ttgtgaatga taaagtgcgc catgaatacc accgccgaat ggtgcgcgaa tcgttaatgg
     8821 tgcctgccaa tcattgttag aacgatagcg cattttagca gcttcactca taatttggtt
     8881 agtcgccggt aaaatatatt ccgcaaattg tatttcagca aaaggacgtt tccccatcat
     8941 cgctgcacca atagcagaac cgacaatgtt ggattcagca agtggtgtat ctaatacacg
     9001 ataaacgcca tatttttctt gtaatccagc tgtcacccca aaaacgccac cttttttacc
     9061 tacatcttca ccaagaatca tcgtttgcgc atctttttct agcgcgacat caagtgcttg
     9121 tctaatagct tcaagatatg aaattttagc catgttgacg tcctccttct tcgtagacat
     9181 gtaagtatgt ttcagatgga tctgggtatg gtgcggcctc agcttcttta gtcgcttgat
     9241 gaacccactg ttgattttct ttttcaatcg actcaaacca cgtttcatca actaatgact
     9301 gatcgattaa atattgtttg aatttaaggt tacaatcatt ttctttatcc gcattttttt
     9361 cttcaactgt gcggtaacgg tcatcatcat ctgaagagtg tgctgttaat cttgtacaca
     9421 tggcttcgat taatgaggca ccttcaccat ttactgcacg ttcgcgagct tttttaatag
     9481 caccatagac agcaattggg tcattaccgt caatcgtctc accgaacatg ccatatcctt
     9541 tcgcacgatc tgataaatat tttgcaccat attggaattc tttagataca gaaatcgcat
     9601 atttattatt ttcaattaag caaataaatg gtaagttatg gacgcctgca aaattcaacc
     9661 cttcatgaaa atcaccttgg tttgaactcc cctcacctag tgtcgttaat gcgatttgag
     9721 atttgccatc catcttaaat gttaatgctg caccgactgc atggaggatt tgtgtagcca
     9781 ctgaagaccc ttgtgacata atgccgactt cttttttact gaagtgagat ggcatttgtt
     9841 tacctccaga actgatgtca tcacgtttac caaaagcgga taacatcgtt tctaaaggtg
     9901 tcatacctaa ataagtaact aatgctaaat cacgataata aggcgatgta atgtctcctt
     9961 tttgtaaagc ataagccgtt ccgatttgtg tggcttcttg accttgacaa ctgatgacga
    10021 atggaatttt cccagcacga tttaagagcc acattctttc atctaactta cggcctaaat
    10081 ccatagcacg gtacatgttt tttaaatctt caatttcaag gccaacactt tgataatctt
    10141 tcatatctat tttcctcctt cttatctata tgtgaataga ttgatgatta gattttaatc
    10201 ctaattccat gagtaattct gaaatggacg gatgtgcgtg tgttgaaagt cctaattcaa
    10261 gtgcagaacc attcataaat tgtaaaacac ttaattcgtt gatgagctct gtaacatgag
    10321 gaccaattaa agatgcaccg atcaaactac cagatgcttg atcaaacaat agttcagcaa
    10381 agccttcaga aattgatgaa gtagtaatcg ttgctttacc attcgcttta aacggtgctt
    10441 tcatgacttc aaatttaaga ccgcgttgtt ttgccgtttc ttgattaaca ccgattgacg
    10501 caatttcggg tgatgtataa acacatcttg gcatcaaatc ataatcaacg ggtagtggat
    10561 tttcattaaa catatgttca acggcaatca caccttctct agctccgaca tgtgcaagtt
    10621 gtaaatggcc gattacatct ccagcagcat aaatatgtgt atcagccgtt tgcatatatt
    10681 cgttcgtttc gatcatttgc ttatcattca atacaacttt cgtattgtct aaacctaaat
    10741 ccgctgtatt cacttgtcga ccaatagcaa cgagtacttt ttcagtggag aatgggtttt
    10801 caagattgaa ggtcacttcc tcgtcgcttt gttggatgtc gtctcctttg agcaccgtat
    10861 tgatatggaa attgacacct tgctcttcca attgtttttg aattaattga ctgatttgtg
    10921 cattttctgt tggtaaaata cgtggaccag cttcgataat atgtaccgtg acacctacac
    10981 tactaaagaa agatgcaaat tctaatccga tgacaccgcc gccaataatc gtgatggatt
    11041 gtggtaatgt ttcaagcgtc atcatatcat tactactata tatttgttgt tgatcaaacg
    11101 gtaaaaacgg tagtgccata ggtttggatc ctgttgcaat taatacatag tcattcggta
    11161 atagttcaga tgttccgtct tcatactcta cagaaactgt gccactttga ggtgtaaaaa
    11221 ttgaagcacc cattaggcga ccaacgccat gaaatacatc aattttatga cgtttcatta
    11281 acccttgtag cccttgatac attgtgtcga cgatgcgatt tttacgttcc atcacttttg
    11341 agaaattaaa cgtcggttgt tcagcagtca caccaaagtc atcggcatgt tgtacgtatt
    11401 gaaacacttc tgctgatttg agaaaagatt ttgttggaat acagccttga tgcaaacatg
    11461 ttccacccat ttttgatttt tcaactatag caacagattt tccaagttga ctcgcgcgga
    11521 ttgcagcaga atatcccgca atacccccgc caaggataac gatatcgtat ttttcttttg
    11581 tcatatgttt tctcctattg atatatctca attttaattt gctgattcaa tgctaattgt
    11641 gcacgttctg caagcgtgat aagttcatgc tctcctggga aaactgaaat tggagcaatc
    11701 cactctatat acttcgcaag ctgatccatt aattgaacac tatggctcat accgcctgta
    11761 aaaataattt gatcgacgtg tccttttaaa acgacagcac gttctccaat cactttggca
    11821 atttgaatca ccattgtgtc gataattaac ttcacatttt catcttgctc atacttggcc
    11881 ataatttccc ttaaatcaga tgtatgaaaa tatgctttaa gtccagactc acgacttaac
    11941 tgcaccttga tttcatcagc ggataactga tgcttatcca tgtattggac aagtaaatca
    12001 tttggtatgc tgccagaacg atccattgcc attggacctt ccccatataa tgcttcattc
    12061 acgtcaatga cacgcccttt ttcatgcgca ccaatgctga tgccccctcc catatgtatc
    12121 acaatcacat tcatattttc ataagcacga ttgactagtg cggcataacg acgagccatc
    12181 gctttttgat ttaatgcatg aaagatactt cgacgttgaa tggacggcac tccagtatga
    12241 cgtacttcat cgatcaattc atctacgaca accggatcag tcgtaaaaac tgggatatgg
    12301 tatttttggc caagttgata accaatcatg gcgcttaaat tagaagcatg ggcgccatac
    12361 ttaaagcttt ttaagtcgtc atacattgct tcgtttactg aatatgtacc gccttcaagt
    12421 ggtttgagaa gaccgccacg acaggcaatg gcatcaattt gattcaactg atacccctgt
    12481 gattcgattt catcttcaat caattgttgt ctcaatgact cttgatcaat taagggttgc
    12541 tttaaaatag cttcagtgtg gctgatattt tcatttactt tacattcatc attttcatat
    12601 attgcatatt tactagaggt actccctaaa tttaatacga gtgttgttgt catacaatcc
    12661 cttctttcaa aaacaaatca aaaatgtatg gagatggaga acaaaacttc agatgctata
    12721 gtcgcaatat tatagtttaa cttgctctct ttacgaattg tgtttttgat tgccttcatg
    12781 tcttggtgtt cctatgggtt tgcccttcaa ctcactaacg cttgattaaa ctgttacatt
    12841 tgttgaggtg ttagtggatt atggaagcag tacagaaatc tcatgtgtca taaagatttc
    12901 gtcgcactga ccaggatggc tgactcgaaa tctgaaaaac atgcgccttg agaaggcaga
    12961 cagctactgt gataaacagt aaccactatt aaagtaaaga agtgaacgct agcagtatac
    13021 acgcaatctc ttaagcgtct tagccttttg gtcaaactta catcaaatgc aacaacttaa
    13081 ggcaagttga tagaatgagg acaaacaata atatccaatt catccacatt ttttgacttt
    13141 tttatcatca ttaatggatt tgcgtccata atatagatag agactgggaa aactcaatat
    13201 cccagtccca tattttgttt acaaggttaa ccgactttta atgcgactaa aatagagttg
    13261 attttatttt caatactgtc cgctcttgat gtaagaacga ttggaaaatg tgcgccgaga
    13321 ataagactcg caacttttgc acgaccaaaa tatgtgagtg atttatataa tacattgcct
    13381 gcatctaatc ctggaactat aagaacatct gcattccctg caacttttga atggatacct
    13441 ttttgaatcg cactcttttt atcaatcgca ttatctaacg caaatggacc ttcaacatgc
    13501 acatgcggtt caataggatg tgattgataa tattcactta aacgctcagc ttgaacggta
    13561 gatggtattt tagggctgac cttttcaacg gatgacaata atgcaatgtg aagttgttga
    13621 tattgtaacc tttttgaaaa atcaaccaaa ttttgaataa tggctttcat ctcttcttct
    13681 gttggcgcaa tattgagcgc aacgtctgaa atcataagca gtttgtgata cgacgggatt
    13741 tcacataacg ccacatggtt taaaaaaggt tttgtacctt gtgcgttacg ttttaatacc
    13801 gcagataaga ttttagcagt tgaaatttgc cctttcatca aaatttgtgc tttgccatga
    13861 tgcaaatcat ttaagcaacc ttcaattgca gcctcttctg tatcaaaagt ttgaatatgg
    13921 atacgcttta aaaagtcggc cgacaactca aatgaacgaa taatttcagc tacatcttga
    13981 ttattataaa gtttgaagtc agcttcggtt tgctttaaaa cttcaatgat gactctaata
    14041 agtggttcat ccgttgcatt aacaatcgca attgtccctg ttagagcttg aggttcttta
    14101 agcaagtctg taaaattcaa ctttcatcat cctttgtgct tttggttttg ttcaatcatt
    14161 tctttcgcat tttgtcttgt caattcggta acagttgcac cagaaatcat gcgtgcaatt
    14221 tcatctatcc gtgcatcacc tgtaagttcg cgtacagttg tagtggtgcg gtcatctttc
    14281 tcatgttttg aaatgtacaa atgatgatca ctcattgacg caacttgtgg taggtgagaa
    14341 atacagatga cttgaataac tgaagcaatg tctttcattt tttcagccat cttttgtgcc
    14401 gcttgtccag aaacaccgga atccacttca tcaaataata tcgcagtttg cccgtgtgcg
    14461 cgtacaaaaa tacttttcag tgcgagcata attcgtgaca gttcaccgcc acttgcaatt
    14521 ttgttcaaac tttttaatgg ctcaccttta tttgggctaa ttaaaaattc aatgcgttct
    14581 aaaccatctt tttgcggtgt ttcataaggt ttaaacgaaa tttctaaatt cgcatccttc
    14641 atttgtaagt attggatttc attgacaata cgatcgcgca actgtcttgc tactattcta
    14701 cgcgcttttg ttaacttttc cccatcttcc tgaacttgtt gcgataattg ttggatttct
    14761 tcacgtagtt tcgaggtact ttcttcataa ttttcgattt tattaatttc atcagcgatt
    14821 ttttcttgat aaatcctcaa atctgaaata tctttgccgt atttgcgttt taaattgttc
    14881 aacaagttca ttcgtgattc gagttcattt aaatattgtt catcaaattc agtttggttg
    14941 atttcttcat agatttgatg tttagcatct tctaacgtgt aataaaattg atcaacttct
    15001 tcttttagct tttcaaacgt ttcaggtaaa atttgattca cattttgtaa ttctgagctt
    15061 aaagtataaa ggcgatctgt aatcgcatgt tcatccgtta aagtcacata agcagcgttc
    15121 aatgctaaac ttaagttttc ggagttctga atacgtttaa tatcgatttc taattgttcg
    15181 atttcgcctt cttttaattg cgcttctttt aattcatcat attggaactt cattaaatct
    15241 aggcgttgta ataaagcttg atctgcagac tctagtgctt caagctcttt tatcttttct
    15301 tgatgttgtt cataagattg ggcatattgc tgaagttcag caatatattc accgtcagca
    15361 taacgatcaa gtagttcaac gtgatacttt tgttttaata aagattgtgt ttcatgttga
    15421 ccatggatgt caagtaaaga ttgcatgact tgtcttaaat cttgtaacgt cacagtttgg
    15481 ttgttaattc tacagatact tttaccagaa ctaaaaattt ctcgtttaac aattaaaaag
    15541 tcttcattaa tatcaattcc taacgtttca agttgacgta tcgcatcttt cgcatcatca
    15601 atatcaaaaa tgccttcaat aattgctttc ttttcaccat gtcgtacaaa ttcagaggaa
    15661 gcacgcatac caatcagttg tccaatggca tcaataatga ttgatttacc cgcaccagtt
    15721 tcaccactaa gcacagtgag gccatctgaa aactgaatat ctaatgtatc gataatagca
    15781 aattgtttaa tggagaggct ttgtaacatc tgacatccat ccttataaca tattgaaaat
    15841 tctttcttta atttcatcag ctgaagggtt atcgcgacaa ataattaagc acgtatcatc
    15901 accacaaatc gtacctagca cttcttccca atcaatttga tccagtatcg caccaattga
    15961 ttgtgcatta cctggcaacg tttttagcac gagtaaatta ttagcactgt cgatttttac
    16021 aaatgaatcc atcaaataac gtcctagttt ttcaagtgga tgataacgac gatcattagg
    16081 caaactataa atatattgac cacttggtgc agggacttta attaattgaa gctctttaat
    16141 atctcgtgac actgttgctt gcgtgacgtt catatcgtaa tcatttaaac gtttcaccaa
    16201 ctcgtcttgt gtctcgattt gttcgtttga aataatttct ctaattttta tatgtcttac
    16261 agatttttta ggcataatag acacctcgta acgaatattt atacaatgat tttaccacac
    16321 tcggttatga tttacctact taagtgatgt acgtcatcgt aagaaacaat tgatataacg
    16381 attgactttt aaaattcaaa aacagcgtgc gtaacgattc aatatatacg aaaaatgtat
    16441 atgattctcc ttttgagtag gaaaattgaa taaagataga attgaaatga aacaaatgtg
    16501 gtcatttcca tccattaaaa aaacacgagc aactgtaata cattactcgt gtttggatgt
    16561 tagtctaaaa attgttgaat tgtatgaacg agcgggtcat gcgttaaccc taaatcttct
    16621 aaaatttgct ctacatctcc gtgctcaatg tacgtatcat caataccgag tcttttgata
    16681 cgattggtgt atccatgatc ggtgaagtaa tttgcgattt gactgcctaa gccaccattt
    16741 agcatcgctt cctcaactgt aaccacaggc gtgtttttgg cacctaagtc acctaagaca
    16801 gtcgtgtcca tcggtttgat ataacgtgca ttaatgacgc gtgctcgaat cccttgctct
    16861 gctaaagttt tagcaacttc aactaaagtc gcgagtgtgg gtccatagct gataagagcc
    16921 acgtcttgac cttcagttaa gtcttcccat gttccaatag gcaagtgctc acgtttatca
    16981 gtgatttcaa cgcctaaacc attgccacgt ggataacgaa ttgcaattgg cccttgtgca
    17041 tgatgcatcg ctgtataaac gagatttttc gcttcatttt catctttagg catcgttaca
    17101 atcatatttg gaaattgtgt caagaaaccg acatcaaaca caccttgatg cgtttcaccg
    17161 tctgcaccga caaggccaga gcgatccact ccaaaaatga cgtttaagtt ttgacgatcg
    17221 acatcatgta acacttggtc atacgcacgt tgtaaaaatg ttgaatagat cgcaacatac
    17281 ggtttcatac cttctatcgc taaaccagcc gccatcgtga cagcatgttg ttcagcaata
    17341 ccgacgtcaa aaaattgttc cggcaactcg gactggaatt ttgtaagttt agaacctaca
    17401 ggcattgcag gtgtaatagc aacgacacga cgatcctttt tagcgtatga cagaatttca
    17461 tcactcatta actgactcca tgaaggtcct tgtgtttggc ctttaatctg ttcgccagtt
    17521 tctaatttgt atggtcctaa gccgtgccaa gtgccaattt tatcattttc agctggatgg
    17581 taacctttcc cttttttcgt tacaacatga atcaacactg gtttgttaat agaatctgct
    17641 gcagccaagg cattctccag ttcttcaaaa ctatggccat caactggacc aatataacga
    17701 attccgagct cttcgaaaaa cgcgccatct acaactaaat attttaagct gtctttgata
    17761 cgatcagcag attcacgtaa tcgactgccc ccaggcaacc gacttaaaat cgattcagca
    17821 tcaaatttga gtcgattata cccttggttc attcgaatac gaccgagcat gttatgcatc
    17881 gcgccaacat taggtgcgat actcatttcg ttatcgttta aaataattgt catgtttgta
    17941 cggtcatggc cgatgttgtt taaagcttca agtgccatac caccagtcag tgcaccatca
    18001 ccaataactg gaacgatatg attctttttg cctaaaatat ctctcgcttt tgccatgccc
    18061 atcgctgctg ataatgaggt agaactatgc ccagcttccc acacatcatg atcagactct
    18121 tttaattttg gaaatccaca taatcctcta tattgtctta atgtttcaaa ctgatgaccg
    18181 cggcctgtca aaattttatg aatataactt tgatgaccga catcccagat aattttatct
    18241 tctggactat taaaatgctt atgcagtgcg attgtgagtt caacaacacc taaatttgca
    18301 ccaatatggc cccccgtgac agcacacgtt tgaattaaga actgtctcac atcgtgactc
    18361 aatgcttcaa gctctttaac agaaagactt tttaagaatg aaggattctg tatatttctt
    18421 acgtccattg aaatcaccct taattttttc tttcgtactg attataacac ttcaatcaca
    18481 tcatagatag acagaaccta attttgacgt tggtaaaaaa gtgttaacaa atagtttaaa
    18541 tctgttgtat caaattccgt tgataatgat gttaaaatgg cttcggcttt ttgaatatgt
    18601 gcttgaagtt cttgttcagc acccttctca cctaaaagtg tgacatacgt acttttatga
    18661 ttagtgacat cacttccaac tggtttgcct aatttcgctt cattaccata cacatctaag
    18721 aggtcatctt taatttggaa aatgacacct aaatgttgag agaactgaat caattgttgt
    18781 gcagttgttt gacgaattga tgtaatgatt gttgcagctt caatcgcaaa ctgaatcagt
    18841 gcacccgtct tatgaatgtg aatgctttcg agtttttcga gtgaaatttg ttgattttca
    18901 ctttgcatgt ctaatgtttg accgcctacc ataccttgat gtccacttgc ttgacttatt
    18961 ttttcaataa gtgcaacttt aatttgagcg tcgatatgag gtgtcaacgc aatcttttcg
    19021 aacgcttttg tcaacaaggc gtctccagcc aatatcgcta gccactcacc atagaccgta
    19081 tgattcgtcg gtttaccacg ccgcaaatca tcatcatcca ttgcgggtaa atcatcatga
    19141 atcaatgaat atgtatgaat catttcgagc gctaaagcaa catgcatacc actctcaagc
    19201 ttttgatgat ccaacatttt aattgtagct agcatgagta aggggcgtat tcttttccca
    19261 ccagcttcta gagaataacg catactctgt tcaagagaag tacctagttg agaatcttca
    19321 attgcatgat tcaagtggcc attaaattgt tctaataact cattcagatt ttgattcatt
    19381 actttcatct gcctctttat ccattaattc tgctactttc ttctcagcat cactcaatgt
    19441 tttttcacat gatttagaaa gcgcaatgcc ttgttgatac aattctaaag atttttctag
    19501 cgatatcgta tcatgatcta gctgatttac aatattctct aattctttca tcatttcttc
    19561 aaaagattta ttttcggtcg tcattttgcc acctcacctt ttcaattctt gcatctaaag
    19621 cgccatcttt catagtgact tcaatgcgtt caccttcatg tatgtcatga ctactcgtaa
    19681 taacttcatc atctttttta actatagagt agcctcgtaa catcgtcttt gtaggactca
    19741 aattatcaag cgataacagt tgatgttgaa agatttgctt tttagaagtt aaaatacgtt
    19801 gaatttgttt atgtaactga gatgataaat ctatagatgc ttgcttttga cgttgtacgt
    19861 tatcataaaa atatttaatg cgaatgcgtt gttgcaacat cgctaaccgt tgttgttcat
    19921 gttgtagtcg caattgcata gattgatgaa gggcgcgatc gagctcgtca cgtttttgta
    19981 tttgctgttc atataacaaa ccaggttgct taagtttgta atacgattgc agctgctgta
    20041 gttgttgtga tgtgtgtttt aaatgttgct tcatataacg atttaaatac gcacgcgttt
    20101 gatacaacac ttgtttgagc tcttgtttgt ccggcgtcgc taacatcgca gcttgtgtcg
    20161 gtgtcgcggc acgtaaatca gcaacaaagt cactaagtgt tgtatctgtt tcatgtccaa
    20221 cagcagatat aacaggtgtt tgacatgaaa aaatagcttt aacaacatct tcctcattga
    20281 agttccacaa atcttcaatt gagccgccac cccgtccaag tataatcaca tctgcaccga
    20341 gttgatccgc agattgtaat ttttcgatga tgtccgcttt tgcttgtgcc ccttgtacga
    20401 gtgtactgat tttgatttgt tgagcaagtg ggtaacgatt gttcaaagtg ttttgaatat
    20461 ctcgaatagc tgcgccggta ctggctgtaa gtatcgcaat tttttgagga tacttaggta
    20521 taggtttttt atgagcaggg tcaaaatacc cttctttcat aagcttattt tttaattgct
    20581 caaatttttg gtaaagattc cctaccccgt ccagttgcat atgattaacg taaatctgat
    20641 agttaccacg tcgttcataa actgatactc gtgcttcaat gagaacttga tctccttctt
    20701 ttgggtcgaa atcaagttga tttgcctgtg ttttaaacat cattgcagcg ataacactgt
    20761 tttcatcttt aacggcaaaa tataaatgac cactactgtg acgcttaaaa ttcgacaatt
    20821 cacccttgat gtagacactt tgaagatgtg ggtcttgatc aaatttatat ttaatatatt
    20881 tagttaatgc agagattgtt aaatattttt ccatgccatc actcaatttc ttttaatgtg
    20941 acttaataca ccattgataa atttataatg atcatcatcg ctaaattgtt ttgccagttc
    21001 tactgcttca ttaataataa ctttttctgg tgtatcactg tggttcattt caaatgtcgc
    21061 catacgcaaa atgatacgat cagttttcaa caaacgcgca atcgtccatc cgttcaaatg
    21121 cggactaatt gtttcgtcta aaacatgttg atgatctttc acaccagaaa caagccattt
    21181 aatgaagtcg aaatctaaat ctggatagtc ttcttttata aaactaatcg cttcatcaat
    21241 cgtcaactct gtatttttca tctctagttg gaataatgtt tgaaaggctt gacttcttgc
    21301 ttgttttcta ctcattttaa ttctccgttc atcagttaat cacgattatt tttggccatt
    21361 tctatatgtg taatgtgcac attgatttgt tgaggtgtga gtgcagtcat cgttcgcaat
    21421 gcactatgaa tggattcttg aacttttaac gctgtttcgg aaactttaac gccataattt
    21481 aaagaacaat agacatcaat agtgatttca ttgtcttttg ttgtgatttt aacgccctta
    21541 cttaagtttt tgcgaccaaa gcgttccaaa gttgaatttt ttaaatccgg aaatacccct
    21601 tcaacaccct tcacttctga cactgcaata cttgcaataa cagaaatgac ttcaggttcg
    21661 atttcaacac ttccaagatt tgggttgaaa tgttcaattg gctttgccat ataagttgcc
    21721 cccattcaat ttaatgatct tcattcataa tatcgtaaat ctctaaaaat ttggtgctaa
    21781 agaaaccttg attgaagact ggatgattta gtaaacgaat atggaaagga atggttgtat
    21841 cgattccgag tacgacaaat tcactgagcg cacgtaaacc agacataatg gcttcctctc
    21901 tcgtcggttg atgtacaatc aatttcgcaa ccattgaatc atagtatggt ggaatgacat
    21961 agttcgtgta acaagctgaa tcaatccgta caccaaatcc gcctggtgtt aaatactgtt
    22021 cgactttacc aggtgaaggc ataaagtttt tataaggatt ttcagcgttg atacgaaatt
    22081 caatggcatg accttgaatt tgaatatcat cctgtgtata aggtaatttt tctcccatag
    22141 ccactttgat ttgttgtttt acgagatcca cacctgtcac catttcagtc actggatgct
    22201 cgacttgaat tcgcgtattc atttccataa agtaaaattg atcttcatct aaatcatata
    22261 taaattcaat agttcctgcg ttaaaataat tgaccgcttt agctgctctt acagctgcat
    22321 cacccatctc ttttcttttc tcttcagtaa gaattggaga gggtgattct tcaacaagct
    22381 tttgcatgcg gcgttgaatc gtacaatcac gttcgccaag gtgaatcacg tttccatgct
    22441 catcaccaag aatttgaatt tcaatatgac ggaagttttc aataaatttc tctaaatata
    22501 agccaccatt accgaaagct gtttctgctt cttgttgtgt cattttataa ccattgatta
    22561 attcttcttc atttcgtgcg atacgaatcc ctttaccacc accaccagca gttgctttta
    22621 taataacagg gtaaccaatt gagttagcag tttggatggc atcttcaatc gtgttcacaa
    22681 gtccctcact accaggaaca acagggacat ttgcacgttt catttcttct tttgcaatat
    22741 ctttaatccc cattttctga atcgattcat agctcggtcc aataaacttc agttggacag
    22801 cttcacacaa ttccgcaaaa tcaccatttt cagccaagaa gccatagcca gggtgaatac
    22861 cgtcacatcc cgtagaagtg gcgatagata aaatgttcgg tatgttcaag tacgaatcct
    22921 ttgattgctt gggtcccaca cagtaggctt cgtcggctaa ttgagtatgt aatgcatctt
    22981 tgtcgccttc agaataaatc gctacagttt ggatacccaa ttcgtgacat gcgcgaataa
    23041 tacgcactgc aatctcgcca cggtttgcaa ttaatatttt tctcatatta tttcaccttg
    23101 aataaagctt ggccatactc aaccatttgt ccatcttcaa ctaaaatttc aacgatttca
    23161 ccagccactt cagcttgaat ttcattaaat aacttcatgg cttctaatat acaaacagtt
    23221 gtatcaggtg tcacttgatc accgatttga acataagcgc tctcttcagg agacggtgat
    23281 ttatagaatg taccgaccat aggtgctgta atcgttttga gtgatgtatc agcctctgtt
    23341 gttggtgtat ctactgatgc agcgtttact tggacaggtt cagctgttac agttggtgca
    23401 accatttgct gaggtgctga gatttgttga gttacaattt ctttttcttt ttttaagttg
    23461 atcgttgtac ctttatcttc aatactgatt tcagtgaggt tagaattgtc tagaatatta
    23521 attaattctt taatctcttt aaaattcatt ttggttactc ccttatgatt gattatttct
    23581 accctactat tttacttgag tgtataaggc aattcaagaa aatacataat atctaaagcg
    23641 tagtagtgac tttttcattc ttactaaatg attcaatcga ttcgcttttg ttgatcgtat
    23701 cgtctttgaa atattcaacg atgctatgtt aatagataga ataaacaacg ctgattatgg
    23761 ctatgtatag cttaaaaata aaatatggac taacaagaca atcatcagcc tcattagtcc
    23821 aataataata ttctattggt cacattatca ggaaaatctc gttcacctga tatgaattaa
    23881 attaaccacg tgatacgtag ctaccatctg ttgtgttaat gactaacaca tcgccttcat
    23941 taacgaataa cggcacattc aatgtgtaac ctgtttcaac cgttgctgat tttgttgccc
    24001 ctgtcgctgt atccccttta atcccaggtt cagtttcagt tacttcaagt tcaacagttt
    24061 ttggtaactc cacaccgatt gtttcgcctt ggtacgtttg gatatgtaca tccatgtttg
    24121 cttttaaaaa cttcaattcg tattctaagt aatctgtgct tagttctgtt tgttcgaaag
    24181 tttcgttgtc catgaatacg tgattgtcgc catcagcata caaatattgc atacggcggt
    24241 tttcaatcat cgcgggctca actttttcgc ctgcacggaa agttttttct tggattgcac
    24301 ctgttcttaa attacgtaat tttgatctta caaacgcaga tcctttacca ggtttaacat
    24361 gttggaattc tattactttc cagattccgt tatcaacaga aatcgttaag cctgttttaa
    24421 aatcatttac agaaatcatt cagtttcctc ctcagaatca ctcttctttt aaaataataa
    24481 ggtcttttat gcaattagta aagcgttcgc cgccattttc tgtaattaaa atatcatctt
    24541 ctatacgaac accacctaat ccttctacgt aaataccagg ttcaatcgtc acacaatgat
    24601 ttttttctaa gacgacatct gatttttgag acagaccagg aagttcatga atgtctaaac
    24661 cgataccgtg acctaacgaa tgaccaaagt gttttccgta acccgcttct gtaataatat
    24721 ctcgcgcaat actatccatt tctttacctg tcattcctgg acgaatcgct gcaatggcgg
    24781 cttcttgact tttcaacacg atattgtaaa ttttaaccat ttcttcagaa ggttggccga
    24841 cagcgaaagt acgtgtgata tccgaacaat aaccgttgta gtaagcacca aagtctaacg
    24901 tgaccatttc tcctgactga atgactttat cggaagctac accgtgtggc atcgcacctc
    24961 gaatacctga agcaacgata gtatcaaatg acgtgtcgtc tgcgcctaaa tgcaacattt
    25021 tactttccaa atgcgcctta acttcttttt cagtcatacc cggtttaaca acagtgagaa
    25081 tatattcata tgcctcatcc acaatttgtg ctgctttttg aatcgcttta atttcatctt
    25141 catctttcgt ttgacgaatc gtttcaatag cttgaccgat agaaatgaga tcgtgacggc
    25201 cttggtttaa ttttaaaaat gaatcataag cgacgagatg accttcaaaa ccaatatttt
    25261 gtaaatttaa tgttttaaat tgttctgtta atgcggagaa caaatcacct ttttgtaaaa
    25321 tgacctcaaa ctcagtggct tgctgttgtg cttgatcagt atatcggaaa tca
//
LOCUS       DANHOL010000018        25243 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.018, whole genome shotgun sequence.
ACCESSION   DANHOL010000018 DANHOL010000000
VERSION     DANHOL010000018.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 25243)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25243)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25243
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.018"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(20..970)
                     /locus_tag="PTC08_000520"
     CDS             complement(20..970)
                     /locus_tag="PTC08_000520"
                     /EC_number="1.1.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate dehydrogenase"
                     /protein_id="HDK5682051.1"
                     /translation="MKTKGNKVVLVGNGAVGASYAFTMMSQGVADELVIIDINKDKVL
                     GDVLDLNHGAPYADSPVKVVAGEYSDCGDADLVVICAGAPQKVGETRLDLVEKNAKIY
                     KDIVTSIMDSGFDGIFLIAANPVDILTYVTLKYSGLPKHKVIGSGTILDTARFRHLIS
                     EAFDVAPASIHGYIIGEHGDSEVPVWSGATIAGVSIYEQLKNDPEKSHLIEDIYVNTR
                     DAAYDIIKAKGATYYGVAMGLMHISKAILKNQNIVLTVSSYLEGEYGHEGVYTGVPTV
                     INGDGASRVIETPLNDDEKEKFAKSVKILKDMQDSISHLF"
     gene            complement(1131..1955)
                     /locus_tag="PTC08_000521"
     CDS             complement(1131..1955)
                     /locus_tag="PTC08_000521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HDK5682052.1"
                     /translation="MWKWETEGEAKGVIVIVHNMLEHTGRYAYVITHLKRNGYHVIMG
                     DLPGQGQTSRMNKGQIQSFEVYQERVLEWVEIAEEYHLPIFMIGVGLGGLICLNLLEK
                     VQLDIEGLILLSPLLAFQKHYKTRKNILASNIGDISKGTKFDIGIEAEVLTRNPEVQE
                     ETRNDPMMLKKVSYHWYKEVVRTMKDTADHLHKLTAKPMCVMYGTADQISDTEVTHQL
                     LHSLNLDEVYFKAWPLLAHEIHNEPEREAVMRYILSFLNNRVYAAGYLVEDENSLK"
     gene            complement(2098..2430)
                     /locus_tag="PTC08_000522"
     CDS             complement(2098..2430)
                     /locus_tag="PTC08_000522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682053.1"
                     /translation="MFRDMAFYIFGTQLDTFVQYFIFELIILVVIGLILGFLTKKIWP
                     VIVVIVGLNVIDVGILAQFNVSQGEGTFFGQLMLLLVAKFFPTFYEILLTVLLLRVDW
                     MRKIFKLV"
     gene            2916..3902
                     /locus_tag="PTC08_000523"
     CDS             2916..3902
                     /locus_tag="PTC08_000523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline dehydrogenase family protein"
                     /protein_id="HDK5682054.1"
                     /translation="MALVKHFFIALSNNAFLNSAAKIIGPSLGANRVVAGNTIDDVIK
                     TIKRLNEKNISATVDNLGEFVNNERDAIEAKNNILKVMEAIHKHQLDAHMSVKLSQLG
                     SEFDRALAYRNIHQIVSKAQEYDHMHINIDTEKYDSLFDITQTLDRLKPEFNNVGTVI
                     QAYLFKADVLIDKYPDLRLRLVKGAYKESPYIAYQAKEEIDENYIRLIEKRLLTAKNF
                     TSIATHDHRIINHVKEFVKKHDIDKSKFEFQMLYGFRSELAEEIANEGYNFTIYVPFG
                     DDWFGYFMRRLAERPQNITLALKEFVKPKALISVAGATLGTLALFKILKRKP"
     gene            complement(4027..4494)
                     /locus_tag="PTC08_000524"
     CDS             complement(4027..4494)
                     /locus_tag="PTC08_000524"
                     /EC_number="2.5.1.78"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="HDK5682055.1"
                     /translation="MMKFEGQLNGKGLKIGVVVGRFNDLITGRLLDGAQDALRRHQVA
                     EDSIDVAYVPGAFELPIVAKKMAQTGKYDAVVTLGCVIRGATSHYDYVCNEAAKGIAK
                     ASDDTGVPVIFGVLTTENIEQAIERAGTKAGNKGAESAVGAIEMANLLRQMNA"
     gene            complement(4509..5690)
                     /locus_tag="PTC08_000525"
     CDS             complement(4509..5690)
                     /locus_tag="PTC08_000525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002490166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP
                     cyclohydrolase II"
                     /protein_id="HDK5682056.1"
                     /translation="MQLDKIEEALEALKQGGTIIVVDDEDRENEGDLVAITEWMDENT
                     INFMATHGRGLICTPITAEIAQQAGLDNMVEHNRDPHGTAFTQSIDHVQSTTGISAFE
                     RTVTARALIDEKMTAETFHQPGHIFPLIAKKHGVLERRGHTEATIDLAKLTGARPAGV
                     ICEIMNDDGTMAKGEQLERFKAQHNLKMISIEDIVAYIKSQRTLISVEAKIKLPTQFG
                     EFDMYGFTSNIDGEEHLALVKGDIQPTMNVRVHSACATGDIFHSERCDCGEQLEASMA
                     YIQQHGGMLLYLPQEGRGIGLMNKLKAYELIEQGYDTVSANEALGFEPDLRDYDIAAQ
                     ILKHFNITTVNLLSNNPEKLLGLQRYGIQIGKRIPVITETNVHNHDYMQVKKLQMGHL
                     I"
     gene            complement(5704..6333)
                     /locus_tag="PTC08_000526"
     CDS             complement(5704..6333)
                     /locus_tag="PTC08_000526"
                     /EC_number="2.5.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase"
                     /protein_id="HDK5682057.1"
                     /translation="MFTGIVEEVGTVQHIQKRNPTTALTIQCKKILDDMHIGDSISVN
                     GTCLTVTRFDQYSFTVDVIHGTENKTYLADLKTNDTVNLERALLATGRLGGHFVQGHV
                     DGKGVIQHIQTSQNEWIYTIKAEPCLIDQMIPQGSIAVDGISLTVFKKFRDCFDIHLI
                     PETRKATILADKKQGDPVHLETDMLFKYVQAITKEKSQLSVEELLNAGF"
     gene            complement(6338..7384)
                     /gene="ribD"
                     /locus_tag="PTC08_000527"
     CDS             complement(6338..7384)
                     /gene="ribD"
                     /locus_tag="PTC08_000527"
                     /EC_number="1.1.1.193"
                     /EC_number="3.5.4.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     diaminohydroxyphosphoribosylaminopyrimidine
                     deaminase/5-amino-6-(5-phosphoribosylamino)uracil
                     reductase RibD"
                     /protein_id="HDK5682058.1"
                     /translation="MNHYLDYAIQLAEMTQGQTGTNPAVGAVIVKHGRIIGFGAHLKK
                     GERHAEIQAIDMAGAKHVKGATIYVSLEPCSHYGSTPPCAQRIIDTGIAKVVYAAKDT
                     TLQETSHDVMVQHGIEVEYRPHPRAEQLYAAFYRSKEGAVPIVTVKVSASIDGKQATD
                     HFESQWITSKQVKADVFQLRHSHDAIITGNGTLTHDNPSLTTRVEDGHHPAKVILSRS
                     GKINWDAQLFQDHVTPIYIYTENQALTSSFDHVEIIQQTDIQIEDVLKDLYQKGYGHV
                     LVEAGPNVTSQFLASRLVTHFILYLAPKIIGGQGVNQFYQTPLVTPLNQLPQFEIVQT
                     DIIDTDLKLRMQRK"
     regulatory      complement(7530..7664)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00050"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="FMN riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="flavin mononucleotide"
                     /db_xref="RFAM:RF00050"
     gene            complement(7841..9409)
                     /locus_tag="PTC08_000528"
     CDS             complement(7841..9409)
                     /locus_tag="PTC08_000528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD/NAD(P)-binding protein"
                     /protein_id="HDK5682059.1"
                     /translation="MRVAIVGMGTAGVSVLRQLVKYKQFKKIEVDLYDNAYNMGQGEP
                     FQNDSEDFLINVPVDHLSLNVDNILEFREWYNEQDTFDYGDADYLPRYVFGHYMKSYL
                     EQFDTTFENVNVIKQEVTHMYIEEQESEITPKRIVVCTGNDVDSCQKYDYVFFTTGTM
                     SYNDPFDLKGLKGYIHSPYPANQTLAEVDDDDAVAIIGTGLASLDVVRHALSHHQRKP
                     IVMASRSGKLPSVRGTMQDITFQFLTLENFDALKAENMGVVPLEDAVALFKKEFEVRD
                     IPLEKLLKRRKYDAIRDLNYDLNHPEEVGALQSMFETLKENMNWIWNSLSREDQEQFI
                     NKYHRYMKENTNPMPRETAQLLVEEIKAGHLQVLSGLEHVRQFYGKYRLRFKNVHEEM
                     KMDVVINATGPKKHLSQLDDDDALLLDVANRQIVQAHPLGGIQIVPSTNEVISPLYGT
                     LNNMRAIGQMTNGVNFERNGVSMIIQQAVSAVENLYDTYKAKKALEKEARKQQKKAEE
                     KAKKKKTKKKKKKK"
     gene            complement(9798..10661)
                     /locus_tag="PTC08_000529"
     CDS             complement(9798..10661)
                     /locus_tag="PTC08_000529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylglucosaminidase"
                     /protein_id="HDK5682060.1"
                     /translation="MRKHKKGSILAVLASLMIAAAAGFFFFKMIEDQIFFKSVDQVER
                     VEKLDVTLKQASEKQIDNYTSQQVSNKDHTNWRDASDSEIRQAMDSSSFMDDKRQKYQ
                     FLELSKYQGIDKNRIKRMLRDHPTLLAHTDDFVNAAKAKQVNEVYLISHALLETGSVV
                     SELSNGVEIDGKKYYNFYGVGALDEAPVKTGAEYAKKKGWDTPEKAINGGAAFIHDHY
                     LSNPNQNTLYSMRWNPKNPGEHQYATDINWAKSNAVIMADFYKDMKTEGKYFNWYVYK
                     DDKKHQDGHNY"
     gene            complement(10818..11042)
                     /locus_tag="PTC08_000530"
     CDS             complement(10818..11042)
                     /locus_tag="PTC08_000530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682061.1"
                     /translation="MDYEHLNLEHFFARNDDLDIIRDRSEFVMINNMTKEMMYRDGDV
                     EGTINLARYYYKNRSQAASFIMMDYHREEK"
     gene            11174..11728
                     /locus_tag="PTC08_000531"
     CDS             11174..11728
                     /locus_tag="PTC08_000531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016425400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HDK5682062.1"
                     /translation="MSQSFRYGITPLTGQIRKGVIDIIFDTLYAQYYKFIHFLLHQYQ
                     ISYNYDEYFQLLSIRLWELSMKYDATFNQSFKTYINYQLKYYLIDLLRSAHTPLTTTP
                     LDTSANQLKDMSTSHLNLMLEDIIRTLKPTHRTWFRFYLQGYQQKEIQQLMQVSATTV
                     RKYKIATFRHIKQVLTQDDLKKGF"
     gene            11731..12162
                     /locus_tag="PTC08_000532"
     CDS             11731..12162
                     /locus_tag="PTC08_000532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="competence protein ComK"
                     /protein_id="HDK5682063.1"
                     /translation="MTVTQPQYENILYIKSSESIGHQLVIQHLTHEQRSQMSMKQYID
                     QLAYQFQRDVRTQQKIASETLKVHQMIPIFLSKSLILCPLQSQRAAIQYYINVTHVIA
                     ASSHQQNTRIHFNNNLSLIVPMPLNQFVRKWKDAYLLTALM"
     gene            complement(12165..12614)
                     /locus_tag="PTC08_000533"
     CDS             complement(12165..12614)
                     /locus_tag="PTC08_000533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682064.1"
                     /translation="MRKDVFEYKVKKELWYLNRREKNALTQYFEKHRVETIQQQFSTP
                     RRFVNDYLQHEVFGTRIVSSGHLVTSLVGLLVSNILLLGLFITGLLLSLSAVNYFIQP
                     QVTLSVGTVIAVLFGAIVLMIGTVYLMKRVNAFFTKRLLLYKFNKVN"
     gene            complement(12781..13491)
                     /locus_tag="PTC08_000534"
     CDS             complement(12781..13491)
                     /locus_tag="PTC08_000534"
                     /EC_number="2.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transaldolase"
                     /protein_id="HDK5682065.1"
                     /translation="MADLKVRVFADGADIEQMKKAYQNKEVDGFTTNPSLMAKAGVKD
                     YIEFAKEAVEAIPDASISFEVFGDDMETMEKEAEIIQQFGENIFVKIPVVNTKGESMI
                     PLIKSLSAKGVKLNVTAVYTIEQVKEITEAVTAGVETYVSVFAGRIADTGVDPMPLMK
                     ESVEVTHSKEGVQLLWASCRELFNVIQADEIGADIITCPSDVVKKVSNIGRDINELSV
                     DTVQGFAKDIKSSGLSIL"
     gene            13644..13946
                     /locus_tag="PTC08_000535"
     CDS             13644..13946
                     /locus_tag="PTC08_000535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682066.1"
                     /translation="MSKSKKYFYLSVLLMLISLYFNTLNPLLNAHFTSIIKLIFVCSV
                     VNCLILLIAIRFADKSIKHLPERRNWIHKASKIQPLLLLIVLVVHLLASLYTFGII"
     gene            13979..14344
                     /gene="crcB"
                     /locus_tag="PTC08_000536"
     CDS             13979..14344
                     /gene="crcB"
                     /locus_tag="PTC08_000536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002488424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fluoride efflux transporter CrcB"
                     /protein_id="HDK5682067.1"
                     /translation="MKYILIFLGGCIGALLRWQTSFITIGYHLPIGTFIANLLGAFLM
                     GYFTVRLHHWNSSYPKLKLGLTTGFLGALTTFSTFQLELVTLAQQLDWFNLVIYGLCS
                     YCGGLICCYLGYKLGGVHA"
     gene            14341..14688
                     /gene="crcB"
                     /locus_tag="PTC08_000537"
     CDS             14341..14688
                     /gene="crcB"
                     /locus_tag="PTC08_000537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fluoride efflux transporter CrcB"
                     /protein_id="HDK5682068.1"
                     /translation="MTMLFVALGGGIGAVLRGFISAITSRYMNISFPIATLIVNLIGS
                     FCIGYFNHFTLLSPELKLLIITGLLGGFTTFSTLTLELFQMLHSKTWGRFIWYSTCQY
                     IGCFVLCFIGMQL"
     gene            complement(14790..15626)
                     /locus_tag="PTC08_000538"
     CDS             complement(14790..15626)
                     /locus_tag="PTC08_000538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HDK5682069.1"
                     /translation="MKHVTFYNGNQMPQVGLGVFRVENNDTAKEAVKHAIKSGYRSID
                     TAMIYQNEEKVGEGIREALAETDLTREDLFITSKLWLSDYGRENVAAAYQASLERLGL
                     DYLDLYLVHWPGLDEDVMIDTWRGMEELYHDQKVKNIGVSNFNVEHLDKLLATSRIKP
                     VINQVEFHPYLTQKRLRVYLEAQNIHMESWSPLMNAQILEDDTVKQVAAEVGKSPAQV
                     IIRWNLQHGVVTIPKSITPSRIEENLNVFDFELSLGQMEVLDGLNEDRRIGPDPLHFD
                     GK"
     gene            complement(15768..16679)
                     /locus_tag="PTC08_000539"
     CDS             complement(15768..16679)
                     /locus_tag="PTC08_000539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NERD domain-containing protein"
                     /protein_id="HDK5682070.1"
                     /translation="MTQFGPMEIGLIAAIVVAALFFILFLVALKSKKKAKETYANQYQ
                     TKQEKLTHEHQEELEKVRIDKKKAETRHKEEYETMVSSKNREIDALKLFSKNHSEYVT
                     DMRLLTIRERLVKEKRIRPEDMHIMANIFLPTNDLEDITRVSHLVLTRTGLYVIDSEL
                     LKGHVYQGISQQQFSDNPMMEQVFKTLDLSPKTPQTVVLDQSDASHNALSIVDYTDRL
                     AHVEALAVKLQHELDLKYTPTPILYFNPRHEDDVTISNYASQGVTKVLVGPEQLNEFF
                     NRFVFHGRIQYDVNDLQNIMDEIESFN"
     gene            complement(16767..17966)
                     /locus_tag="PTC08_000540"
     CDS             complement(16767..17966)
                     /locus_tag="PTC08_000540"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HDK5682071.1"
                     /translation="MTYNRRLFTSESVTEGHPDKIADQISDAILDEILKGDPNARVAC
                     ETTVTTGMALIVGEITTSTYVDIPKVVRETVKEIGYTRAKYGYDYKTMSVLTAIDEQS
                     PDIAQGVDRALEYREAGNEEVLNTGAGDQGLMFGFATNETDTFMPLPIDLSHKLSKRL
                     SEVRKNGTLDYLRPDGKVQVTVEYDENDQPKRIDTIVISTQHHEEIELEKIQNDIKAC
                     VIYPTVDEQLLDEETKFFINPTGRFVIGGPQGDAGLTGRKIIVDTYGGYARHGGGAFS
                     GKDPTKVDRSAAYAARYVAKNIVAAQFADKCEVQLAYAIGVAQPVSIAIDTFGTGNVS
                     ENILIEAVRQNFDLRPAGIIQMLDLQKPIYKQTAAYGHFGRNDVQLPWERTDKVEVLQ
                     ETVNTLK"
     regulatory      complement(18071..18182)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00162"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="SAM riboswitch class I; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="S-adenosylmethionine"
                     /db_xref="RFAM:RF00162"
     gene            18430..20010
                     /gene="pckA"
                     /locus_tag="PTC08_000541"
     CDS             18430..20010
                     /gene="pckA"
                     /locus_tag="PTC08_000541"
                     /EC_number="4.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxykinase (ATP)"
                     /protein_id="HDK5682072.1"
                     /translation="MSFDKHAIETVANKPSSHFQLTTTELYNKILKRNEAELTELGAI
                     NAKTGEYTGRSPKDKFIVDNPQVKDDIDWGSINQPISEEKFLNLYEKVVEYLDERDEL
                     FVFNGYAGSDQESQLKLTVINEFAWHNLFAQNLFIKPTSKEEAAKIKADFTIISAPRF
                     KANPEVDGTRSETFVIISFKHKIILIGGTEYAGEMKKSVFSIMNYLLPQQGIMSMHCS
                     ANVGDKGDVALFFGLSGTGKTTLSADPNRKLIGDDEHGWNENGVFNIEGGCYAKAINL
                     SAEKEPQIFEAIRYGTVLENLVVDEQGYIDFDDNKYTENTRAAYPINYIDNIVLPSKA
                     SHPNTIIFLTADAFGVLPPISKLDKDQAMYHFLSGFTSKLAGTERGITEPQPSFSTCF
                     GAPFLPLRAEVYAELLGDLIDKHDVDVYLVNTGWTGGQYGVGNRIQLKYTRKMVNDAI
                     NGKLKTATFEKDDIFGLSIPTKIEDVPTTILQPKNAWTDPTAYEEQAQNLVSRFKENF
                     KKFGEDAQQLEAAGGFKG"
     gene            complement(20408..21184)
                     /locus_tag="PTC08_000542"
     CDS             complement(20408..21184)
                     /locus_tag="PTC08_000542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S9 family peptidase"
                     /protein_id="HDK5682073.1"
                     /translation="MAFIKNKTMPVFLESHKVEEWTYEVNGLHVKGLNVAPHQPVKRI
                     VIYLRGGKGQVGRVRLARLLQFITLDTLVFAPYYRGNNGSEGNDDFAGADLADVTVAA
                     DMLKARYPQASLHLVGFSRGGIQGLLTFQTVEADSYIIWGGVTDLHLMYEERVDLRGM
                     LRRMIGHPKKDIAAYESRNALKDIYAGVPPILIIHGGKDVQVGIHQAYFLEQHLKNVG
                     ARFDTLYQMDEGHVPRPPAMKHVLARIQQWMTDIETGTKF"
     gene            complement(21165..21635)
                     /gene="ytkD"
                     /locus_tag="PTC08_000543"
     CDS             complement(21165..21635)
                     /gene="ytkD"
                     /locus_tag="PTC08_000543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside triphosphatase YtkD"
                     /protein_id="HDK5682074.1"
                     /translation="MKFTDENQQTVILTFKNDADEKDGGHVLALPIYEQQLVLTHHQQ
                     RGIEFPGGKREVGESSIEALTRELYEETGAIAEHIYYIAQYEVQGEQDCFKKDVYVVI
                     VNAIDRNVHYHETMGPILTHSIEAIDEADKSYLLKDPAILQCVERMSVLGFYQE"
     gene            21694..21945
                     /gene="yidD"
                     /locus_tag="PTC08_000544"
     CDS             21694..21945
                     /gene="yidD"
                     /locus_tag="PTC08_000544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HDK5682075.1"
                     /translation="MKTLFIYAIRFYQRFISPLTPPSCRFYPTCSNYTLEAIQVHGAL
                     KGSWLGLKRILKCHPFHKGGFDPVPLKKSSHHHSGNNKD"
     gene            complement(21921..22907)
                     /gene="menC"
                     /locus_tag="PTC08_000545"
     CDS             complement(21921..22907)
                     /gene="menC"
                     /locus_tag="PTC08_000545"
                     /EC_number="4.2.1.113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="o-succinylbenzoate synthase"
                     /protein_id="HDK5682076.1"
                     /translation="MELTDMQFYLYEPSFIHPIRTPKVTMTHRKTLFVKWTDEKQQSW
                     FGECNAFDTAWYYHETINDVMHVLKVWFEGVRGLDLVSFEEAKQCVATLNPYPAARAT
                     VMMALYQMFHSLESFHVPMTLTINGDFTERLMRLDGVGRIKIKWTSQMIEQVKMLATM
                     YPDIPISTDANQTLTATDTKMLERLKPYLAFIEEPFETLDVEADYTGFPSIALDEQAT
                     CLTTIEQLTQNPHIKTVVLKPFRLGGIDRVLEAMQVLQSKGIHVVIGGMYECGLSRYF
                     TAWLSQWGDYAGDVTPEGFYFERDVTNNVGRLHDGQLYFEPPVVNQSLLLPL"
     gene            complement(22910..24313)
                     /gene="menE"
                     /locus_tag="PTC08_000546"
     CDS             complement(22910..24313)
                     /gene="menE"
                     /locus_tag="PTC08_000546"
                     /EC_number="6.2.1.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="o-succinylbenzoate--CoA ligase"
                     /protein_id="HDK5682077.1"
                     /translation="MEHWLVQQAKQHPNKIAIQTMNETITFQSLLDRAMLKGAQLKQL
                     QRTRLGLYLDNSLEAAILIHGAWLYDIEIALINNRLTPFEIDRQMASIGVDLIVSTAT
                     PQTFNTSTRVIQSDDLEMPSTDLNMAVDTFEFHPQKIASIMFTSGTTGPQKAVPQTFE
                     NHRMSAASCRESLGFAYDSKWLAVLPIYHISGLSILLRSVQYGFTVFLLEKFNTKTVV
                     ELFQTEGITHVSLVPITLMRLMEQGLDQPYHLEKVLLGGAKLDGQFIRQALDRQLPIY
                     NSFGMTETCSQFLTADPTMLQRNPNTVGHASSDIALKVVSPDANGHGELYVKGGNVMQ
                     GYLYPENMNHVFDEEGYFKTGDIASVDEHGDVVIYDRRKDLIISGGENIYPYEIESVA
                     KSHPFIADAMCTSITDSAWGQRPILYVVAKQWVSDMEAFLEARLAKYKLPVHIYFVRA
                     LPYTSTGKLQRRILNEG"
     gene            complement(24488..>25243)
                     /locus_tag="PTC08_000547"
     CDS             complement(24488..>25243)
                     /locus_tag="PTC08_000547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional antiterminator"
                     /protein_id="HDK5682078.1"
                     /translation="YDFYYDSESFKDLMCISEMFIDAFERQTAIHFNDRAVFVELIQT
                     LVKVVYYRQFFGYADRCNVTGEMDKDINNWSKLTAQIMEQLSQTQQFQQKFRRPLSVS
                     DLSEFAYAIQSLYVEHQTPEHHMDIVVVTNISKVEQRILYTKLNDLLPIGHFQGPYSE
                     REATLLSQNFDLCITTSTYYNHPNCQTIHIHKYLTLKDYETLYQLKQYRLSLQQRKSE
                     IFQIIDNEQLSKEEKFKYIEQLYETKMRLQKEM"
BASE COUNT         7570 a         5251 c         4123 g         8299 t
ORIGIN      
        1 attcatttat tatttttcat tagaaaaggt gagagataga atcttgcata tcttttaaaa
       61 ttttaacaga tttagcaaat ttttcttttt catcgtcatt taatggtgtt tcaatgacac
      121 gtgaagcacc atcgccattg atcactgtcg gcacgccagt gtacacacct tcatgaccgt
      181 attcaccttc taagtaacta gacactgtta atacgatgtt ttgatttttt aagatggctt
      241 ttgaaatatg cattaatccc attgccacac cgtagtatgt tgcacctttt gctttaatga
      301 tgtcataagc tgcatcacga gtattcacat aaatatcttc aattaaatgt gatttttcag
      361 ggtcgttttt caattgttca taaattgaaa cacctgcaat tgttgcgcca gaccatactg
      421 gcacttcaga atcaccgtgt tcaccaatga tataaccatg aatacttgca ggtgctacat
      481 cgaaggcttc actaattaaa tgtctgaaac gtgctgtatc taaaattgtt cctgaaccga
      541 taactttgtg ttttggtaag cctgagtatt ttaaagtaac gtaagttaaa atatctactg
      601 ggttggctgc gattaagaaa ataccatcga aaccgctatc cataattgaa gtcacaatat
      661 ctttataaat ttttgcattt ttttctacta agtctaaacg tgtttcgccg actttttgag
      721 gcgcgcctgc acaaatcaca actaaatctg catcaccaca gtcagagtat tcacctgcta
      781 cgactttaac tggagaatct gcatacggtg caccatggtt taaatctaat acatctccaa
      841 gcactttatc tttattgata tcaataataa ccagttcatc tgctacacct tgactcatca
      901 ttgtaaaggc atagcttgca cccactgcac cattacctac taatactact ttattacctt
      961 ttgtcttcat gaaaaacact ctcctaacta tgccaaattt gttcactatt tattacttgt
     1021 gattcttttc acatatataa cttaacacgt tttccatatt ctttcaatga taaaatttta
     1081 ggacaaacga aaattaatca tttatcctat actttttgta tatttttaac ttatttaaga
     1141 ctattttcat cttcaactaa atagcctgcc gcatacaccc gattgtttaa aaagcttaaa
     1201 atataacgca tgacagcttc acgttcgggt tcattatgaa tctcatgtgc aagaagtggc
     1261 catgctttaa aataaacttc atctaaattc aatgagtgca ataattggtg cgtcacttca
     1321 gtatcagaaa tctgatcagc cgttccatac atgacacaca tcggttttgc cgttaattta
     1381 tgaagatggt cggctgtgtc tttcatggta cgtacaactt ctttatacca atgataactc
     1441 acttttttta acatcatcgg gtcatttcgt gtttcttctt ggacttctgg attgcgtgtc
     1501 agtacctcag cttcaatgcc tatatcaaac tttgtgcctt ttgaaatgtc gccaatgttg
     1561 gatgctaaaa tatttttacg agttttataa tgtttttgaa atgcgagcag tggcgaaagt
     1621 aagattaaac cttcgatatc caattgcact ttttctaata aatttaaaca aatcaaacca
     1681 cctaatccga caccaatcat aaaaataggc aaatgatatt cttcagcaat ttctacccat
     1741 tccaacacac gctcttggta gacttcaaag ctttggattt gccctttgtt catacgtgaa
     1801 gtttggcctt gtcctggcaa atcacccata ataacatggt agccattgcg ttttaaatgt
     1861 gtaataacat aggcataacg tcctgtatgt tctaacatgt tatgtacaat gacgatgacc
     1921 cctttagcct caccttcagt ttcccatttc cacatactac attatccttc ctttaattct
     1981 atgtattata acatctatta tagcgtgact tccctactca tcgcgactaa aaacataaaa
     2041 atacacgtga atccttcatg accgagtgcc acaacctttt cacgtgttgc atttatttta
     2101 tacaagttta aatattttac gcatccaatc gacacgtaat aatagtacgg ttagtaaaat
     2161 ttcataaaat gtagggaaaa attttgccac taagagtaac atcaattgtc caaagaaagt
     2221 gccctcacct tggcttacat tgaattgtgc taaaatgccg acgtcgatca cattcaaacc
     2281 tacaatgact acgataactg gccaaatttt ctttgttaaa aaacctaata ttaaaccgat
     2341 aacgaccaat ataatcagtt caaatataaa atactgcaca aatgtatcta actgcgtccc
     2401 aaaaatgtag aatgccatat ctctaaacat tacctatctc cctcaaatcg ttttcacttt
     2461 attttatcac gtttcacttg tctgctattt aaagatatcg taaagattca ggtcaatcat
     2521 ttacacaatg ttaatattca tgacagtcct ttatgatgtt tagaggaact tcacaatgat
     2581 ttcatcatag cttgacatga acgtgctata ttgaaaataa acaaagtcag attaaaggag
     2641 ttcatgatga agctcgttta taaatgtttg ttttgcatcg tcctattttt atgtacacca
     2701 ctcatcacag cgatcgctca agagccgatt acgatagaag cacaccatta atccatatat
     2761 aatgaatact ctttttataa ccttttttac atttaattat gccgtcacca ctcaactttg
     2821 taaaattcgc acctttttat atgaaaacgt tttcttccct tatctcttca tgatacactg
     2881 atattacatc agaaacataa tgggaggaat tcggcatggc cttagtcaaa cactttttta
     2941 tcgcattgtc taataatgca tttttaaatt cagcagcgaa aatcattggg ccttcattag
     3001 gggcaaacag agtagtcgcg ggaaatacaa ttgatgatgt gattaaaacg attaaacgac
     3061 tgaatgagaa aaatatttca gctacagtag ataatctcgg tgaatttgtg aataacgaac
     3121 gagatgctat tgaagcgaaa aataatatat taaaagtgat ggaagcgatt cataaacatc
     3181 aattagacgc acacatgtct gtcaaactga gtcaactcgg tagtgaattt gaccgtgcac
     3241 ttgcatatcg taacattcat caaatcgttt ctaaagcgca agaatacgat catatgcata
     3301 tcaacattga cacggaaaaa tatgatagct tattcgatat tacacaaaca ttagaccgtt
     3361 taaagcctga gtttaacaat gtgggtaccg tcattcaagc ttatctattc aaagcagacg
     3421 tattgattga taaatatcca gacttacgct tacgactcgt taaaggggct tacaaagaat
     3481 caccatacat tgcatatcaa gcaaaagaag aaatcgatga aaattatatt cgcttaattg
     3541 aaaaacgttt attgactgcg aaaaacttta cgtcgattgc aacacatgat catcgcatta
     3601 ttaatcatgt gaaagaattt gttaaaaaac atgatatcga taaatcaaaa tttgagttcc
     3661 aaatgcttta tggctttaga tccgaactcg ctgaagaaat tgcaaatgaa ggttacaact
     3721 ttacgattta tgtcccattt ggtgatgatt ggttcggtta tttcatgcgg cgtttagcag
     3781 aaagacctca aaatatcaca ctagcgctta aagagtttgt gaaaccaaaa gcgttaattt
     3841 ctgttgcagg tgccacgtta ggcacacttg cgttatttaa aattttgaag cgtaaacctt
     3901 aaagagtatc agcacataaa tagaaagcag ggactgggat attatgtccc agtccttgtc
     3961 tttttaactt gggtttaacg gcatagacgc tactcatcta ttttaaatac acgtatttga
     4021 tgtcgattaa gcgttcattt gtcgaagtaa gttcgccatt tcaatagcac cgactgcaga
     4081 ttctgcacct ttattgcctg cttttgtacc tgcgcgctca atcgcttgtt caatattttc
     4141 agtcgtcaat acaccaaaaa taactggcac gcccgtatca tcactcgctt tcgcaatccc
     4201 tttagccgct tcattacaga cataatcata atgcgatgtt gcaccacgaa tgacacatcc
     4261 taatgttacg acagcatcat atttgcctgt ttgtgccatt tttttagcga cgattggaag
     4321 ttcaaaggcg cctggtacgt aagcgacatc tatactatct tctgccactt gatgtcttct
     4381 caatgcatct tgagccccat ctaataaacg tcctgtaatt aaatcattaa aacgacccac
     4441 cacaactcca atttttaaac ctttaccatt taattgacct tcgaatttca tcatacttcc
     4501 tcctctattt atattaaatg acccatttgt aattttttca cttgcatata atcatggttg
     4561 tgcacattcg tttcagtgat gactgggata cgtttaccaa tttggatacc atagcgctgt
     4621 aatcctaata atttttcagg gttattgctc aatagattaa ccgttgtaat attaaaatgc
     4681 tttaaaattt gcgctgcaat gtcataatca cgtaaatccg gctcaaatcc aagtgcttca
     4741 ttcgctgaaa cggtatcata gccttgttca attaattcgt aagcttttag tttattcatt
     4801 aaaccaatgc cacgcccttc ttgaggcaaa tagagcaaca tgccaccgtg ttgttggata
     4861 tacgccattg acgcctctaa ctgttcacca cagtcacatc tttcactatg aaatatatca
     4921 cctgtcgcac aagcggaatg gacgcggaca ttcatcgtgg gttgaatgtc acctttgacg
     4981 agcgctaaat gttcttctcc gtcaatattt gaagtaaaac catacatgtc aaattcacca
     5041 aattgggttg gtaatttaat tttcgcttcc actgaaatca atgtacgttg tgatttaata
     5101 tatgcaacaa tatcttcaat cgaaatcatt ttcaagttgt gttgcgcttt aaaccgctct
     5161 aattgttctc ctttggccat cgtcccgtca tcattcataa tttcacatat cacaccggct
     5221 ggacgtgccc ctgttaactt cgccaaatcg attgtcgctt cagtgtgccc ccgacgttcg
     5281 aggaccccat gctttttagc gattaacgga aagatatgac caggttgatg aaatgtttca
     5341 gcagtcattt tttcatctat caatgctctc gctgttactg ttctttcaaa agcactaatt
     5401 cctgttgttg attgcacatg gtcaatactt tgtgtaaatg ccgtaccgtg gggatcgcga
     5461 ttgtgttcga ccatattatc aagtcccgct tgttgggcaa tctctgctgt aattggtgta
     5521 caaatgaggc ctctcccgtg ggtcgccata aaattaattg tgttttcatc catccactct
     5581 gtaattgcaa caagatcacc ttcattttcg cgatcttcat catcaacgac aataatcgtg
     5641 ccgccttgtt tcaatgcttc taacgcttct tcaattttgt ctaattgcat gtaacgcccc
     5701 tccttaaaaa cctgcattca ataattcttc tactgacagc tgtgattttt cctttgtgat
     5761 ggcttggaca tatttaaaga gcatatctgt ttctaaatgc accggatcac cttgtttttt
     5821 gtcagcaaga atggttgctt tacgtgtttc tggaattaaa tgaatatcaa aacaatctct
     5881 aaatttttta aaaaccgtta gactgatacc atcaacagca atcgaccctt gtggaatcat
     5941 ttgatcgatt agacacggtt cagctttaat tgtataaatc cattcatttt gggatgtttg
     6001 aatgtgttga atcacgcctt taccgtcgac gtgaccttgt acaaaatggc cacctaacct
     6061 cccagtagct aataatgcac gttctaaatt aacggtatca ttcgttttta aatctgctaa
     6121 ataggtttta ttttcagttc cgtgaatgac atcgactgta aagctatatt gatcaaagcg
     6181 cgtcacagtc agacatgtac cattcacact aatcgagtcg cctatatgca tatcgtctaa
     6241 tattttttta cattgaattg tcagtgctgt tgtagggtta cgtttttgaa tatgttgaac
     6301 tgtaccgacc tcttcaacga tacctgtgaa catgtcgtca cttcctttgc attcggagtt
     6361 ttaaatcggt atctattatg tcagtttgta caatttcaaa ttgtggaagt tggtttaaag
     6421 gggtcaccaa tggagtttga taaaattgat tcacaccttg accacctatg attttcgggg
     6481 ctaaatatag gatgaagtgc gtcaccaaac gagacgctaa aaattgtgaa gttacattag
     6541 ggcctgcttc gacaaggaca tgaccataac ctttttgata taaatctttg agcacatctt
     6601 caatttgaat gtcggtttgc tgaattattt caacatggtc gaatgatgaa gtgagtgctt
     6661 gattttcagt ataaatataa atcggtgtca catgatcttg gaaaagttgt gcatcccagt
     6721 tgattttgcc ggagcgcgat aaaatcactt tcgctggatg atgtccatct tccacgcgtg
     6781 tcgttaaact tggattatca tgtgttagcg tgccatttcc agttattatc gcatcatgag
     6841 aatgtctcaa ttggaaaaca tctgccttta cttgtttaga agtaatccat tgactttcaa
     6901 aatgatccgt cgcttgttta ccatctatac tggcgctcac cttaactgtc acaatgggaa
     6961 cagcaccttc tttactgcga taaaaagcgg catacaattg ctcggcacgt ggatgtggac
     7021 gatattccac ctcaatacca tgttgcacca tcacgtcatg gcttgtttct tgtaatgtgg
     7081 tatctttggc agcataaacg actttcgcta taccagtgtc aatgatacgt tgtgcacatg
     7141 gaggtgtact gccgtagtgt gaacacggtt caagggagac gtaaatcgta gcacctttaa
     7201 cgtgtttagc accggccata tcaatcgctt gaatttcagc atggcgttca ccttttttta
     7261 aatgtgcacc aaaaccgatg atacgcccat gtttcacaat gacggctcct actgctggat
     7321 tcgttccagt ttggccttgt gtcatttctg ccaattgtat cgcatagtct aaataatggt
     7381 tcatactttc acctcaataa aaaaccactc gattgtcgac ttcgagtggt aggatgtatg
     7441 aaaagtgatc aaaacacatt gattcttttt cattcaaaat ttggatacga caaataaact
     7501 cacatattgt atgtgaaaaa atgtcgtcac tattcttcct cccatccaga ctttaactgt
     7561 cggctctaga ttctcactag atcagccata tcaaatcaat gatacgggtc gcaggcttat
     7621 attttactgc cggttgggaa tttcacccag ccccgaaaga atatatgaaa ttgtattgag
     7681 aataaaagat acacatggac ctatcaaaag tccatgcgtc tatattagcg tatcttttta
     7741 aaatttacaa ttgattgaac atcaaatctt cagcatcacc aattaataat ataatgattt
     7801 atcacaacat taaagctctc tccgccctaa aacagcgtct ttattttttc ttctttttct
     7861 tcttcgtttt tttctttttt gctttttctt ccgctttctt ttgttgtttg cgcgcttctt
     7921 tttctagagc cttttttgct ttataggtgt catataagtt ttctaccgca ctgactgcct
     7981 gttgaataat catgctcacg ccattacgtt caaagttaac accgtttgtc atttgtccaa
     8041 ttgcacgcat gttgttgagt gtaccatata acggactaat gacttcattc gttgatggca
     8101 cgatttggat cccaccaaga ggatgtgcct ggacgatttg acgattcgcc acatctagaa
     8161 gtaatgcatc gtcatcatct aattgactca aatgtttttt cggacccgtc gcattaatga
     8221 cgacatccat tttcatttct tcatgaacat ttttaaagcg caaacggtat ttaccgtaaa
     8281 attgacgcac atgctccaaa ccagacaaca cttgtaaatg gccagctttg atttcttcca
     8341 ccaacaattg tgctgtttct ctaggcattg gatttgtatt ctctttcatg tagcggtggt
     8401 atttgttgat aaattgttct tggtcttcac gacttaaact attccaaatc caattcatat
     8461 tttcttttaa cgtttcaaac atactttgta atgcaccgac ttcttctgga tgattcaaat
     8521 cataattcaa gtcacgaatc gcatcatatt tacgacgttt caataatttt tctaatggta
     8581 tatctcgtac ttcaaattct tttttaaaca atgctacagc gtcttctaat ggaacgacac
     8641 ccatgttttc tgccttcagc gcatcaaaat tttccaatgt taaaaattga aaggtaatat
     8701 cctgcatcgt tccacgcaca ctcggtaatt taccactacg actcgccatc acaatcggtt
     8761 tacgctgatg atgacttaat gcgtgacgta caacatctaa acttgctaat cctgtcccaa
     8821 taatcgccac agcatcgtca tcatctactt cagctaacgt ttgattagca ggataaggtg
     8881 aatgaatgta cccttttagt ccttttaaat caaatggatc gttgtaagac atcgtaccag
     8941 tcgtaaagaa cacataatca tatttttgac acgaatcgac atcgttccct gtacatacga
     9001 caatacgttt aggagtaatt tcactttctt gctcttcaat atacatatgc gtcacttctt
     9061 gtttgatgac attgacattt tcaaatgttg tgtcaaattg ttctaaataa cttttcatat
     9121 agtgaccaaa tacgtatctc ggcaaataat ccgcatcacc gtaatcaaac gtatcttgtt
     9181 cgttatacca ttctctaaat tctagaatgt tatcgacgtt taatgataaa tgatcaacag
     9241 gcacattaat caaaaaatct tcactatcat tttgaaaagg ttctccttgc cccatgttat
     9301 aagcattatc atataaatct acttcaatct tcttaaattg cttatatttt acgagctgtc
     9361 gcaaaacgct cacacctgct gttcccattc caacaatggc tactctcatt ttgcaccatc
     9421 cttactctaa tttgtacatt gcttctctat tataccctga atgataccta ttaattaatc
     9481 attttacatt ttactatcgt attggtcctg ttcgagtcat taatgatgta caaaatttga
     9541 gcagtaagaa tcgtaaacgt cacacattta ctttgattac aattcacacg catagtacac
     9601 ttgagacata aaggagtgcg tactatgtta aaaatgattg tcaaagtgat tatttcaaca
     9661 gtcatcttat tttttgtact cggtcgtaac aataaagctg agtaatctcg tatttatgca
     9721 gcaataaaaa aggttgagtc gttcacatga ataccgtgac aactcaacct tttcgttcaa
     9781 tattaatcaa aatggattta atagttatga ccatcttgat gctttttatc atctttgtat
     9841 acgtaccagt taaaatattt accttccgtt ttcatatctt tatagaaatc cgccataatc
     9901 accgcattac ttttagccca gttaatgtct gtagcatatt ggtgttcacc aggattttta
     9961 ggattccaac gcatactata taatgtgttt tggtttgggt tagataagta gtggtcgtga
    10021 ataaacgctg caccaccatt aatggctttt tctggtgtat cccaaccctt tttcttcgca
    10081 tattctgcac cggttttaac aggcgcttca tctaatgcac cgacaccata aaagttataa
    10141 tattttttcc cgtcaatttc cacaccattc gacaattcag aaacgactga gcctgtctct
    10201 aaaagcgcat gtgaaatcaa atacacttca ttaacttgtt tggctttcgc cgcattcaca
    10261 aaatcatccg tatgtgctaa caatgtcgga tgatctcgta acatccgttt aattctgttt
    10321 ttatcaatac cttgatactt tgacaattct aaaaattgat atttctgccg cttgtcatcc
    10381 ataaaagatg aactatccat cgcttgacga atttcagaat ctgaagcgtc acgccaattg
    10441 gtatggtctt tatttgaaac ttgctggctt gtgtagttat caatttgctt ttcagatgct
    10501 tgttttaacg tcacatctaa cttttcaaca cgttcaactt ggtcaacact tttaaagaat
    10561 atttgatctt caatcatctt gaaaaagaaa aaacctgcag ctgcagcaat cattaaagat
    10621 gcaaggacag caaggatgga acctttcttg tgctttctca taaacacacc tcttcagaat
    10681 gtttcatatt gttacataaa ttaaatttac tcgcttgact tcaaatttta ccaccttaca
    10741 cgactctgta caattggttt catctcttgt tacaaattca taaaaaaata gtaatgaata
    10801 tgtaaactaa tccattacta tttttcttca cggtggtaat ccatcataat gaaacttgct
    10861 gcttgagaac gatttttata gtaatagcgt gcaaggttaa tcgttccttc tacatcaccg
    10921 tcacgataca tcatttcttt tgtcatgtta ttaatcataa cgaactctga acgatctcta
    10981 atgatgtcca aatcgtcatt acgcgcaaag aaatgctcta aatttaaatg ttcgtaatcc
    11041 ataatatcct cctctataca tttgtaatgg tcgaaatgtc ttaattgcgt ccttatacac
    11101 cgtttcatta aaaaaatagc gataaaacag tgtctcattc ttgtattaaa cataaaatag
    11161 cacaaaaagt aaaatgtcac aatcatttcg ctatggtata actccattga ccggtcaaat
    11221 tagaaaagga gtgattgata tcatttttga tacactttat gctcaatact ataaattcat
    11281 acatttttta ctacatcagt atcaaatttc gtataattat gatgaatact tccaattgtt
    11341 gtcgatacgg ttatgggaac tttcaatgaa atatgatgcg acttttaatc agtcttttaa
    11401 aacgtatatc aattatcaac tgaaatatta tttaatcgat ttattacgct cggcacatac
    11461 accgttgaca acaacaccac tggatacatc agccaatcaa ctgaaagaca tgtcgacatc
    11521 acatttgaat ttgatgcttg aagatatcat acgaacttta aaaccgacac atcgcacttg
    11581 gtttcgcttt tatttgcaag gttatcagca aaaagagatt caacagctga tgcaagtatc
    11641 agctaccacg gttcgtaaat ataaaattgc caccttccgt catatcaaac aagtattgac
    11701 acaagatgat ttaaagaaag gattttagcc atgactgtca cacaaccaca atacgaaaac
    11761 atactttata ttaaatcgtc agaatcaata gggcatcaat tggttattca acatctcacg
    11821 catgaacaac gaagccaaat gtcgatgaaa cagtatattg accaactggc ttatcaattt
    11881 caaagagatg tacgtacgca acaaaaaatt gcgagcgaga cgttgaaagt acatcaaatg
    11941 atcccgatat ttttgagcaa atcactgata ctttgtccac ttcaatcaca acgcgcagcc
    12001 attcaatatt atattaatgt cacacacgtt atcgccgctt cgtcacatca gcaaaataca
    12061 cgcattcatt ttaacaacaa cttgtcactc attgtcccaa tgcctttaaa tcaattcgtt
    12121 cgaaaatgga aagacgctta tttactcaca gcactaatgt aactttaatt cactttatta
    12181 aatttataca acaacaatct tttggtgaaa aatgcgttga cacgtttcat caaataaacc
    12241 gtcccaatca ttaatacaat cgcaccgaat aaaacagcga tcacggtacc tacagataat
    12301 gtcacttgag gttggataaa gtaattcacc gcacttaaac tcagtagcaa tccagtaata
    12361 aataaaccga gcaacaaaat attcgaaaca agtaagccaa ccaatgatgt aactaaatga
    12421 cccgatgaaa caatacgtgt cccaaaaact tcatgttgca aataatcatt tacaaaacgg
    12481 cgtggtgtcg aaaattgttg ttggatagtt tcaacacgat gcttttcaaa atattgtgtt
    12541 agcgcatttt tttcgcggcg attgagatac cataactctt tcttcacttt atactcaaat
    12601 acgtcttttc gcatattaga ctcctttatg tcttttactt aacaaagcat agctaaaatt
    12661 gagatgtatt gcaagcgcca ttcaactcaa aaaagcacat gcgtgcgggt tttgaaatct
    12721 atcattgaat cgatttcagc ccacgcacat gtgctttttg taaatgatgt cgttgtcaaa
    12781 ttataaaatg ctaagacctg aagatttgat gtctttagcg aaaccttgaa ctgtgtctac
    12841 tgataattca ttgatgtcac gaccgatgtt tgatactttt ttaacaacat ctgaaggaca
    12901 agtaatgatg tctgcaccaa tttcatcagc ttggatgacg ttgaataatt cacgacagct
    12961 tgcccataaa agttgcacgc cttccttgct gtgagtcact tcaactgatt ctttcattaa
    13021 tggcattggg tctacacctg tgtcagcaat acgacctgcg aatactgata cgtatgtttc
    13081 aacaccagca gttacagcct cagtgatttc tttaacttgt tcaattgtgt acacagctgt
    13141 aacgttaagt tttacgcctt tagctgataa gcttttgata agtggaatca tagactcccc
    13201 tttagtgttc acaacgggga ttttaacgaa gatgttctca ccaaattgtt ggatgatttc
    13261 agcttctttt tccattgttt ccatgtcgtc accgaacact tcgaatgaga tagaagcatc
    13321 aggaatcgct tcaactgctt ctttagcaaa ttcaatgtaa tcttttactc ctgctttcgc
    13381 cattaagctt gggtttgtag taaaaccgtc tacctcttta ttttgatatg ctttcttcat
    13441 ttgttcgatg tctgcaccat cagcaaatac gcgtactttt aaatcagcca tttaattatg
    13501 cctccttgat atttttatca tactaacgtt ataacatttt ttatgtcctc aatgccattt
    13561 ttacgcttac aaaattttta accagatgta aatgaattca aaaatatgat atgataacaa
    13621 gcgatatgaa aaggaggcat atgatgtcta aatctaagaa atacttttac ttatccgtgt
    13681 tgttaatgtt aatcagtctc tattttaata cgcttaatcc attacttaac gcacacttca
    13741 catctattat taaactcatt tttgtatgta gtgtcgttaa ttgtttaata ttgttgatcg
    13801 ccattcgttt tgccgacaaa tctattaaac atttaccaga gcgtcgcaat tggattcata
    13861 aagcctcgaa aatacaacca ttattactac tcattgtatt agtggtccat ctacttgctt
    13921 cactttacac ttttggcatc atttaaaatt aagaaatttg aagagaaatg gtgatatttt
    13981 gaagtatatt ttaatctttt taggtggctg cataggtgca ctattgagat ggcaaacgag
    14041 cttcataaca attggatatc atttaccgat aggcaccttc attgcaaatt tgttaggtgc
    14101 ctttttaatg ggctatttca cagtacgcct tcatcattgg aattcaagct atccgaaact
    14161 taaactagga ctcacaacag gatttttagg tgcattaacg acattttcca cttttcaatt
    14221 agaacttgtc acactggcac aacagttaga ctggttcaat ttagtcatat atggattgtg
    14281 tagctattgt ggcggcctca tctgttgtta cttaggctac aaattagggg gtgtgcatgc
    14341 atgaccatgt tattcgtggc attaggcggt ggcatcggag ctgtattacg tggcttcatc
    14401 agtgcgataa catcacgtta tatgaacata tcatttccta tcgcgacgtt aatcgttaat
    14461 cttatcggtt cgttttgtat tggttatttc aaccacttta cattgttatc acctgaatta
    14521 aagctgttaa tcatcacagg tttactcggt ggttttacaa cattttcaac attaactttg
    14581 gaactatttc aaatgttgca ttccaaaacg tggggccgat tcatttggta tagcacatgc
    14641 caatatatcg gctgttttgt actatgtttc atcggcatgc agttgtagca acttaaaatc
    14701 ttatgtataa aagttaaagg agctaggaca ttacgtttcc ttagctcctt taatgtatca
    14761 aaaatctata tttacataaa cgttgacaat tacttaccat caaaatgtaa tggatcaggt
    14821 ccaatacgac gatcttcatt caatccatct aaaacttcca tttgaccaag cgataattca
    14881 aagtcaaata catttaaatt ctcttcaata cgacttggtg tgattgactt aggaattgtg
    14941 acaaccccat gttgcaagtt ccaacgaata atcacttgtg ctggtgactt gccaacttca
    15001 gcagccactt gcttcacagt atcatcttct aaaatttgtg cgttcattag tggtgaccaa
    15061 gattccatat ggatattttg cgcttctaaa tacacgcgta aacgtttttg cgttaaatat
    15121 ggatggaatt ccacttggtt aatgaccggt ttaatccgcg aagttgctaa taacttatcc
    15181 aaatgttcca cattaaagtt acttacaccg atatttttca ctttttgatc gtgatatagc
    15241 tcttccatcc ctctccacgt atcaatcatg acatcttcat ctaagcctgg ccaatgcact
    15301 aaatacaaat ctaagtagtc gagtcctagg cgctctaatg aagcctgata tgccgctgca
    15361 acattttcac gaccataatc agataaccat aattttgacg taataaacag atcttcgcgc
    15421 gttaaatccg tttccgctaa agcttcgcga atcccctcgc ccactttttc ttcattttgg
    15481 taaatcatcg cagtatcaat actacgatag ccacttttaa tcgcatgttt aaccgcttct
    15541 tttgcagtat cattgttttc aactcgaaag acacctaaac ccacttgcgg catttgattg
    15601 ccattataaa atgttacatg tttcatatgt catcgctcct ttgtaatcta accttatcgt
    15661 atcgaatcgt gacgtcattg cgcaatcaat acaacctaaa atatagaata tcacccgcct
    15721 caacaacaca aaaagagccg gagatcacac cccagcccta attatattta attaaatgat
    15781 tcaatttcgt ccataatatt ttgtaaatcg ttcacatcat actgaatacg tccatggaac
    15841 acaaaacgat tgaaaaattc attcaactgt tccggaccta ctaatacttt tgtaacacct
    15901 tgtgacgcat aatttgaaat tgtgacatca tcttcatgac gcggattgaa atataaaatc
    15961 ggtgttggtg tatatttcaa atccagctcg tgttgtaact tcacagctaa agcttccaca
    16021 tgcgctaaac ggtctgtgta atcaacaatt gacaatgcat tgtgagacgc gtcgctttga
    16081 tctaacacaa cggtttgtgg tgtttttggg cttaagtcca atgtcttaaa aacttgttcc
    16141 atcattggat tatcagaaaa ctgctgttga ctgatacctt gataaacatg gccttttaac
    16201 aattctgaat caattacata aaggcctgtg cgtgttaaaa caagatgact gacacgtgta
    16261 atgtcttcta aatcatttgt tggtaaaaag atattcgcca tgatatgcat atcttctgga
    16321 cggattctct tttctttgac taaacgctca cgaatggtaa gcaaacgcat atcagtcaca
    16381 tattcactat gatttttaga gaacagtttc agtgcatcga tttctctgtt tttagaagat
    16441 accattgttt cgtattcttc tttatgacgt gtttcagctt ttttcttgtc gatgcggact
    16501 ttttcaagtt cttcttgatg ttcgtgtgtt aatttctctt gttttgtttg atattgattc
    16561 gcataagttt ctttcgcctt cttcttgctt ttcaatgcca ctaaaaacaa aataaagaat
    16621 aatgctgcta caacaatcgc agcaatgagg ccgatttcca ttggaccaaa ttgtgtcatg
    16681 agcaatacct tcctttatca cttttctaca gttatttcta ttatattaaa taactataaa
    16741 attagcgata gttatcatca agaattttat tttaatgtat tcactgtttc ttgtaaaact
    16801 tcaactttat ctgtacgttc ccatggcaat tgcacatcgt tacgaccgaa gtgaccgtac
    16861 gccgcagttt gtttataaat cggcttttgt aaatctaaca tttgaataat acctgctggg
    16921 cgtaaatcaa agttttgtct taccgcttcg attaatatat tttcgcttac attaccagta
    16981 ccaaatgtat caatagcaat cgaaacaggt tgtgctaccc caattgcata tgccaattgg
    17041 acttcgcatt tatcagcgaa ctgagctgct acaatatttt tagccacata acgtgccgca
    17101 tacgcagctg aacggtctac ttttgtcgga tccttaccag aaaatgcacc accgccgtga
    17161 cgtgcataac cgccataagt atcaacaata attttacgtc ctgtcaaacc tgcgtcacct
    17221 tgtggtccac cgataacgaa acggcctgta gggttgatga aaaattttgt ttcttcatct
    17281 aataattgtt catctacagt tggataaatg acgcatgcct taatatcatt ttggattttt
    17341 tctagttcaa tttcttcgtg atgctgtgtt gaaatcacaa tcgtgtcaat acgtttcggt
    17401 tgatcatttt catcatattc cactgtaact tgaactttac catctggacg taaataatct
    17461 aaagtaccgt ttttacgtac ttctgataaa cgttttgaca atttatgtga caaatcaatc
    17521 ggtaatggca tgaatgtatc tgtttcattc gtcgcgaaac caaacattaa gccttggtca
    17581 ccggcacctg tgtttaatac ttcttcgttt cctgcttcac ggtattctag agcacggtcc
    17641 accccttgtg caatgtcagg tgattgttca tcaatcgctg ttaacactga catcgttttg
    17701 taatcataac catatttcgc acgtgtataa ccaatttctt tgacagtttc acgaacgact
    17761 tttggaatat caacataagt tgacgtcgtg atttcaccaa cgattaaagc catccctgtc
    17821 gttaccgtcg tctcacaagc tacacgcgca ttggggtctc cttttaaaat ttcatctaaa
    17881 attgcgtctg aaatttggtc ggcaattttg tctggatgcc cttcagtaac tgattctgaa
    17941 gtgaataaac gtctgttata agtcataata aactcctttt tgtatgtatt acgaacattc
    18001 tctatctgag ctcaataaaa aagagccttt caacactata aaatagagtg aaggctctaa
    18061 cgtccattcg ctcttatcgt tcagactagt attgtgtctg caaacggttt ggcacctttc
    18121 ttcgttaaaa gaggttgctg ggtttcattg ggtccatgtc cctccaccac tcaggataag
    18181 agaatccgtt aaaatcatat tacaaaactt tattaccgat gtcaatttca tcttactggg
    18241 cttttcaaaa tgatgtttga agcaccttta tcctttgcat ttgtttttct actttggtgt
    18301 aacattactt tactttcttt attttatctt aatttttttc ttaattgagt agggattatt
    18361 taacgaatat gttatactct tgaattgtaa aggcttacat tgccgaaatt actttggagg
    18421 gatattatca tgtcattcga caaacatgcg attgaaacag tagctaacaa gccgagttca
    18481 cattttcaac tcacaacgac tgaattgtac aacaaaattt taaagagaaa tgaagccgaa
    18541 ctgacagaat taggtgcaat caacgcgaaa actggggagt atacgggacg ttctccaaaa
    18601 gataaattca ttgttgacaa tccacaagtt aaagacgaca tcgattgggg ttctatcaac
    18661 caaccgattt cagaagaaaa attcttgaat ctttatgaaa aagttgtgga gtacttagat
    18721 gaaagagatg agttgttcgt attcaatggt tatgcaggta gcgaccaaga atcacaactg
    18781 aaactcacag ttatcaacga atttgcatgg cataatctat ttgctcaaaa cttatttatt
    18841 aagcccactt caaaagaaga agcagcaaaa attaaagcag acttcacgat tatttctgca
    18901 ccacgcttta aagcaaatcc tgaagtggat ggcacgcgtt ctgaaacatt tgtcatcatt
    18961 tcattcaaac ataaaatcat tttaatcggt ggtacagaat acgctgggga aatgaaaaaa
    19021 tctgtgttct ccattatgaa ctatttattg ccacaacaag gtattatgag tatgcactgc
    19081 tctgccaatg taggtgataa aggtgacgtc gcattattct ttggtctttc tggtacagga
    19141 aaaacaacac tttcagcaga cccgaatcgt aaattgattg gtgatgatga gcacggttgg
    19201 aatgaaaatg gtgtctttaa tattgaaggc ggttgctatg cgaaagccat caatctctct
    19261 gcagaaaaag agccacaaat ttttgaagcc atccgttacg gaacagtgtt agaaaactta
    19321 gtcgttgatg aacagggtta cattgatttt gatgacaaca aatatactga aaatacgcgt
    19381 gccgcatatc ctatcaacta tatcgataac attgtgttac cttccaaagc atcacatcca
    19441 aatacgatta ttttcttaac agctgatgcg ttcggcgtcc tgccaccgat ttcgaaatta
    19501 gataaagatc aagcgatgta tcatttttta agtggtttca catctaagtt agcaggtaca
    19561 gaacgtggta taacagagcc acaaccatca ttctcaacat gttttggcgc accattctta
    19621 ccgttacgtg cagaagtcta cgctgaattg ttgggtgact taatcgacaa acacgacgta
    19681 gatgtttacc ttgtcaacac aggttggaca ggtggacaat atggtgtcgg taaccgtatc
    19741 caattaaaat acactcgtaa aatggtaaat gacgcgatta acggtaaatt aaaaacagct
    19801 acatttgaaa aagatgacat ttttggttta tcgattccaa ctaaaattga agatgtccca
    19861 acaacgattt tacaacctaa aaatgcatgg acagacccaa ctgcatacga agaacaagca
    19921 caaaaccttg tcagtcgctt taaagaaaac ttcaaaaaat ttggcgaaga tgcacaacaa
    19981 ttagaagcag ccggtggatt taaaggttaa tccatcgcat tatattaaca aagtagtgtc
    20041 tattttttgt tcgacaagag atgacactac tttttattag gtttaaactg atcgtaccta
    20101 tatattctta tgaaacactg acgtgaccta gaatattaca aaaacttctt tttgttacct
    20161 caaatgatag cagtctactc aaataactct agaatcaaca aaagtaccaa aaagtcataa
    20221 ttgtaacctt acttataata ttactaaaaa atgccaatgc tgttatcatt catgcatctt
    20281 aatttaatgt gggcactcaa actttttaat ctttgagcac aaaataaaaa cgtcatgcgt
    20341 atgccttttc aaaatgagcg tacatttcta acgttcattt cgtgacatac acatgacgtg
    20401 atagtattta aaatttcgtg ccagtttcga tgtccgtcat ccattgttga atgcgcgcta
    20461 acacgtgttt catggcaggt ggacgcggga catgcccttc atccatttga tataaagtgt
    20521 caaaccgtgc accgacattt ttcagatgct gttctaaaaa gtacgcttga tgaatgccca
    20581 cttgtacatc tttgccacca tgaatgatca atatcggtgg tacacccgca tatatgtctt
    20641 tcaatgcatt tcgtgactcg taagccgcga tatctttttt agggtggcca atcattcttc
    20701 ggagcatccc ccgtaaatcc acacgctctt catacatcaa atgtaaatct gtcactccac
    20761 cccaaatgat gtaactgtct gcttcaactg tttgaaacgt taataatcct tggataccgc
    20821 cacgtgaaaa gccgaccaga tgtaatgaag cttggggata acgtgctttt aacatgtctg
    20881 ctgcgaccgt aacatccgcc aaatctgcac ctgcaaaatc atcgttgcct tcactcccgt
    20941 tattaccacg ataatacggc gcaaacacta atgtatccag tgtaataaat tgcaacaatc
    21001 tcgcaagacg cacacgaccg acttggcctt tgccgccacg taaataaatg acaatgcgtt
    21061 tcacaggctg atgcggtgca acatttaatc ctttcacatg tagcccattg acctcatacg
    21121 tccattcttc tactttgtgg ctttctaaaa agactggcat tgttttattc ttgataaaag
    21181 ccaagtacgc tcatcctttc aacacattgt aaaatagcag gatcctttaa taaataactt
    21241 ttatccgctt catctatcgc ctctatcgaa tgcgttaaaa ttggacccat cgtttcatga
    21301 tagtgtacat tgcgatctat cgcattaacg atgacgacat aaacatcctt tttaaaacaa
    21361 tcctgttcgc cctggacttc atactgtgca atataataaa tatgttcagc tatagcgcct
    21421 gtttcttcat acaactctcg cgttaatgct tctatacttg attctcctac ttcacgttta
    21481 ccgcctggaa attcaatgcc gcgttgttga tggtgtgtta ataccaattg ttgttcataa
    21541 atgggtaacg ctagcacatg acccccatct ttttcatcag catcattttt aaacgttaaa
    21601 atgacagttt gctgattttc atctgtaaac ttcacgcccc atacgccctt tctttctgtg
    21661 ttacaatatg attgattgaa ggaggattcg actatgaaaa cactgtttat ttacgctatc
    21721 cgtttttatc agcgtttcat ttcgccactg acaccgcctt cgtgtcgttt ttatccaaca
    21781 tgttccaatt atacattaga agcgatacaa gttcacggtg cacttaaagg aagttggctc
    21841 ggtttgaaac gcattttaaa atgtcatccg tttcataaag gtggctttga tcctgtacca
    21901 ttaaaaaaat catctcatca tcatagcggt aataataaag actgattcac tacgggcggt
    21961 tcgaaatata actgtccgtc gtgcaaccgt cctacattgt ttgtcacatc tcgttcaaag
    22021 taaaatcctt ccggggtcac atctcctgca taatcgcccc attgactaag ccaagctgta
    22081 aaatatcgac ttaacccaca ttcatacatt ccgccaataa cgacatgaat ccctttgctt
    22141 tgcaacactt gcattgcttc taacacacga tctatcccac ctaaacgaaa tggtttgagt
    22201 acgacggttt tgatatgcgg gttttgggtg agctgttcga ttgttgtaag acacgtcgcc
    22261 tgttcatcga gtgcaatcga tggaaaacca gtataatccg cttcgacatc caatgtttca
    22321 aatggctctt caataaacgc aagatacggt tttaatcgct ctaacatttt ggtatctgtc
    22381 gctgttaacg tttgattcgc atcggttgaa atcggaatat ccggatacat cgtcgctaac
    22441 attttcactt gttctatcat ttgtgatgtc catttaattt taatccggcc tacaccatcg
    22501 agtcgcatca agcgttccgt aaagtcacca ttaatcgtca gcgtcattgg cacgtgaaat
    22561 gattcgaggc tgtgaaacat ttggtacaac gccatcatca ctgtggcacg agcagctggg
    22621 tatggattta acgttgccac acactgtttc gcctcttcaa atgacactag atcaaggcca
    22681 cgtacacctt caaaccacac ctttaagaca tgcatcacat cgtttatcgt ctcgtgataa
    22741 taccaagctg tgtcgaacgc attacactcc ccaaaccatg attgctgctt ttcatccgtc
    22801 catttcacaa acaatgtttt tcgatgtgtc attgtcactt tcggcgtacg aatcggatgg
    22861 ataaatgacg gttcataaag ataaaattgc atgtcagtta attccatggt catccctcat
    22921 ttaatatccg tctttgaagt tttccagtac ttgtataagg taaggccctc acaaaataaa
    22981 tatgcacagg taatttatat ttcgctaaac gggcttcaag aaacgcttcc atatctgaca
    23041 cccattgctt tgcgacaacg tataaaatcg gacgttgccc ccatgccgag tccgtgatac
    23101 ttgtacacat cgcatcagca atgaacggat gtgattttgc gacagactca atttcataag
    23161 gataaatatt ctctccgcca ctaataatta aatctttacg acggtcataa atcacaacgt
    23221 ctccatgttc atcgacactc gcaatatccc cagttttgaa atagccctct tcatcaaaca
    23281 catggttcat attttcagga tacaaataac cttgcatcac gttgccccct ttaacataga
    23341 gttcgccgtg accattggca tctggtgaaa caactttaag tgcaatatcc gaactggcat
    23401 gacctactgt attcggattg cgttgtaaca tcgtcggatc agcagttaaa aattgtgaac
    23461 acgtttccgt catcccgaac gaattataaa taggtaattg tcggtctaac gcttgacgaa
    23521 taaactgccc gtcgagcttt gcgccaccta acagaacttt ttctaaatgg taaggttgat
    23581 ccaaaccttg ttccatcaga cgcattaacg taattgggac taacgatacg tgggtaatcc
    23641 cttcagtttg aaacagttcc accacagttt tcgtattgaa tttttcgagt aaaaagactg
    23701 taaatccata ttgaacgctt ctcaataaaa tacttaaccc tgaaatatga taaatcggca
    23761 agactgctag ccatttggaa tcataagcga aacctaaact ttcccgacat gacgccgcgc
    23821 tcatacgatg gttttcaaac gtctgcggta ctgctttttg cgggccagtc gtcccagatg
    23881 taaacataat cgaagcaatc ttttgtggat gaaattcaaa tgtatctact gccatattta
    23941 agtctgttga tggcatttca agatcatcag attgtatgac acgggttgat gtattaaatg
    24001 tttgtggcgt tgctgtactc acaattaaat cgacaccaat cgacgccatt tgacgatcaa
    24061 tttcaaatgg cgttaagcga ttattgatga gtgcgatttc gatatcatac aaccatgcac
    24121 cgtgaattaa aattgctgct tccaatgaat tatctaaata taaaccgagg cgcgtacgtt
    24181 gtaactgttt gagttgtgcg ccttttaaca ttgctcggtc caataacgat tgaaatgtga
    24241 ttgtttcatt catcgtctgg attgcgatct tgtttggatg ctgtttggct tgttgaacga
    24301 gccagtgttc catatgtgtc cccccaaaaa caaagattca ttatatctat tatagacctt
    24361 atcttataaa cttgcatcgt ataaaattga acgatcaaat tgacaaaaaa acaacgatgc
    24421 ttcaccactt gagtaaagtc gttgttcaca ataagaatca aaatcataca gttgttcaac
    24481 gtaatcacta catttccttt tgcaatcgca ttttcgtttc gtataactgt tcgatatatt
    24541 taaatttttc ctctttcgac aattgttcat tatcaataat ctgaaatatc tcggatttac
    24601 gttgttgcaa agacaagcga tattgtttca attgataaag tgtctcataa tctttcaaag
    24661 tcaaatattt atggatatgt atcgtttggc aattcgggtg attgtaatac gtagatgtcg
    24721 taatacataa gtcaaagttt tgagacaaca acgtcgcttc tcgttcagaa tatggccctt
    24781 gaaagtgacc gataggcaac aagtcattta atttcgtata caaaatacgt tgttccactt
    24841 ttgaaatatt cgtcaccacg acaatgtcca tatgatgttc gggtgtttga tgttcaacat
    24901 ataaggattg aatcgcataa gcaaactctg ataaatctga cacacttaaa ggtcttctaa
    24961 atttttgttg aaactgctgt gtttgcgaaa gttgttccat aatttgcgca gttaattttg
    25021 accaattgtt aatatcttta tccatttccc cagtcacatt acaacgatct gcataaccaa
    25081 aaaactgtcg ataatacacg acctttacta acgtttgaat cagctcgaca aatacagctc
    25141 tatcgttaaa atgaattgct gtttgacgtt caaaggcatc aataaacatc tcactaatgc
    25201 acatcaaatc tttaaaactt tcactatcat aataaaaatc ata
//
LOCUS       DANHOL010000019        25172 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.019, whole genome shotgun sequence.
ACCESSION   DANHOL010000019 DANHOL010000000
VERSION     DANHOL010000019.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 25172)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25172)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25172
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.019"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            <1..1106
                     /locus_tag="PTC08_000548"
     CDS             <1..1106
                     /locus_tag="PTC08_000548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="aminoacyltransferase"
                     /protein_id="HDK5682079.1"
                     /translation="DQDEVIAACLLTEARALKFFKYFYTHRGPVLDYNNLELVQFFFE
                     HLTQYLKKQRCLYVLIDPYVRNHIRDAKGNITQHFEHAQLFKTLDRLGYKHQGFPIGY
                     SSHSQIRWLSVLDLKDKSEQQLLEEMDYQTRRNIKKTYEMDVQVKTLPIEETERFFKL
                     FQMAEEKHGFTFRDLPYFEEMQKMYAKNSMIKLAFIDLNNLLKKQTEKLDTLKATIAE
                     TQAALESHPNSKKNKTKLKQTEQQLQAQERKIEKTRQLIVEDGEILDLAAAIYIYNRH
                     EVYYLSSGSNPKYNAYMGAYRLQWDMIQFAKQQGIDRYNFYGITGDFTKHAEDYGVQR
                     FKEGFGAHVEEYVGDFVKPIMPTMYRLSQLLKR"
     gene            complement(1217..1516)
                     /locus_tag="PTC08_000549"
     CDS             complement(1217..1516)
                     /locus_tag="PTC08_000549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2316 family protein"
                     /protein_id="HDK5682080.1"
                     /translation="MSLNRAQRRTTREELKAHFAQSTLTTAQLADMMAISEKQVEKVL
                     NMEAPSRLLGGDLTTFIHQVWDLRDHMNDNIKENGDTPAEYTYLKCEKEDYWFLR"
     gene            1627..2169
                     /locus_tag="PTC08_000550"
     CDS             1627..2169
                     /locus_tag="PTC08_000550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HDK5682081.1"
                     /translation="MRKDAIENRQRIEQQAKMMFERDGVDQVSMNQIAKALNIGMGTL
                     YRHFEDKSALCYALVNNDSAQLLADLDAIQSQNDDVQTIFTQAIDTFLQFKTDHRELL
                     HCIEMSQSKSDFRQTLLFQALHHYFYQLMDRGENKQHLTFQVDTLLNTLATQNYIFQL
                     EERQLTNVELRDQLVTLFLN"
     gene            2195..3028
                     /locus_tag="PTC08_000551"
     CDS             2195..3028
                     /locus_tag="PTC08_000551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HDK5682082.1"
                     /translation="METLTVEGAKIRYHQVGRGPVLIFVPGANGTGDIFLPLAEQLKS
                     HFTVVAIDRRDYGESERTTPLPTQAQQPDDATRVKQDAADVAALARHLSDEPVYILGS
                     SSGAIVTMHVLKDYPDVVKRIAFHEPSINTFLPNSTYWKDKNDLIVHQVLTEGLQQGM
                     QTFAQTLNIAPIDAKSMSEPVSDDDAAQHKQYERMLFWAEYEIRQYTHSDITVADLAP
                     HADIITLLNGTDSKGSFPQDVNAYLHDAGNLTLRDIPGGHLGYVQKPEGFANDLLEMW
                     T"
     gene            complement(3098..4048)
                     /locus_tag="PTC08_000552"
     CDS             complement(3098..4048)
                     /locus_tag="PTC08_000552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HDK5682083.1"
                     /translation="MERQHLNGVDVDLQHVAKSMPHLKLTRDNLEDYRANVLSHAKTT
                     IDPRLDVTIEDVDVPYEDELIHVILFRPNKVLNNMPGYLYMHGGGMVSGGAHLDNSDN
                     ARIAHELGCVVVSVDYQLAPETIFSGQLETCYAVLKWMHDEADTLLINRSKLAVGGNS
                     AGGMLAASLAQLALDRGEVDIIFQNLHIPMLDDQTVLEAPSNPYAGHVGWNRDMNRFA
                     WEMYLGHPVDGRTPEPYAVPARRQNFEGLPATFITIGSLDLFVDEVMAYAQNLLHAGV
                     STELHIYPGLYHLGELVPGARVRDQILNDRLNAMRRAFED"
     gene            complement(4070..4877)
                     /locus_tag="PTC08_000553"
                     /pseudo
     CDS             complement(4070..4877)
                     /locus_tag="PTC08_000553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166778.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="arylamine N-acetyltransferase"
     gene            5375..6331
                     /locus_tag="PTC08_000554"
     CDS             5375..6331
                     /locus_tag="PTC08_000554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyacid dehydrogenase"
                     /protein_id="HDK5682084.1"
                     /translation="MKKVFIAGAIPEAGLEQLQAQFQVEMYTGEKLISHEALLEKVRD
                     ADALISLLSTQVTREVIEAAPNLKIIANYGAGFNNIDIEAAREHGIDVTNTPIASTNA
                     TADLTMGILLAVARRIPEGDQLCRTTGFNGWSPLFFRGREVSGKKIGIIGLGSIGTAV
                     ARRAKGFDMEILYTGPTRYEDKEAELNARYVTLDELLAESDFVTINSAYNDSLKHMIN
                     YESIKKMKPTSYLINASRGPIVHESELVRALEDKLIEGAALDVFEFEPEITEELKTMK
                     NVVITPHIGNATFEARDMMANIAANNVVLALTDQKPKYIVNA"
     gene            6343..6705
                     /locus_tag="PTC08_000555"
     CDS             6343..6705
                     /locus_tag="PTC08_000555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HDK5682085.1"
                     /translation="MSQANQRFFKMKELESFSDEAAKKTIFYQSEHSAGAIWCLKPGQ
                     TLPCHTHKNADDVWIAIKGEGTFYTNNHEKKTIKAGDIFVSLPGDAHGMTNTGDEDFV
                     MLGFATPMPLDFIPYEEN"
     gene            complement(6871..7905)
                     /locus_tag="PTC08_000556"
     CDS             complement(6871..7905)
                     /locus_tag="PTC08_000556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016425851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF418 domain-containing protein"
                     /protein_id="HDK5682086.1"
                     /translation="MNPIKKRIEVLDYLRGLALFGIIFANILPILENFSYHHGPPSVM
                     YESHLDVLYNKYLNIFVEAKFFSIFSLLFGIGFYIFFHNAKNKNANPFTLYVRRSVVL
                     LLIGIVHQIFQPGEALLFYSIIGLFLLPLTFVNRRINLVIGLILLIVGALSGNKLTLV
                     PALFVLGYVIGQYDIHRTIYQHKKALRITFVFSLIGFVISLVLLHYFYILPTFDLVKD
                     QMDIKAYADRNNFYSDLTVYTAPFISLFYILFFVMILESSIMKRVLVPFKFYGQMALT
                     NYLLNTALILLVGQWMSVGIAMSGVVSLLIIVFQMLFSMLWLRCFRYGPLEYIWRLLT
                     YLQFFGIRRT"
     gene            complement(8049..9266)
                     /locus_tag="PTC08_000557"
     CDS             complement(8049..9266)
                     /locus_tag="PTC08_000557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDK5682087.1"
                     /translation="MEKKTRIFRIQDHWWVVIGIVLVASTLRAPLTAVGPVIDDIKNG
                     LHINNALAGLLTTIPLVIFGIVSLFVARTMARISMATLVTCAMLLLIVGLIVRILGTI
                     EFFIIGTMIIGVAIAYGNVILPSYAKWLFPAQIGMITGIYSATMNFTAGLGGGLSYPL
                     SQIGSFGYKASLGFWIMLCICALIIWRKHNSRLSIEQFTPEKDETKRQNVQRLKVSRT
                     PLAWAIALTMGFQSMIFYVIVAWLPLIVIDRGLSPSTAGYYFMLNQFAQVPMTFIFPI
                     IASKMKSQSTLVWIIFILYMAGLITLLTLPVSLLFLSMIILGLSLGAAFSICMTFFSI
                     RANTSDGSVALSGFGQSIGYIVAASGPFVIGTIHDIANGWRIPLILVMIMACGFLFVG
                     LISSKDRYIEEYL"
     gene            complement(9388..10323)
                     /gene="arcC"
                     /locus_tag="PTC08_000558"
     CDS             complement(9388..10323)
                     /gene="arcC"
                     /locus_tag="PTC08_000558"
                     /EC_number="2.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamate kinase"
                     /protein_id="HDK5682088.1"
                     /translation="MGKKVVIALGGNAILQPKQAPTFENQYHNIENATRHMVEIKEAG
                     HQIIVTHGNGPQVGNIIAQNEAAKEAIPPSPIDACNAQSQGLIGYMMEQCLKNHLQKR
                     HMTDNVVSLLTMVEVDPKDPAFESPTKPIGVFFNEAEAKKMEAQGFPMVEDAGRGYRR
                     VVPSPEPMRIHGVDEIKQILDHTIVISSGGGGIPVYKDEEQQLHGLEAVIDKDRSGLK
                     LAEQVEADVFMMLTDVPNVYINYGQPNQATLNEVSVQEIEQYIQEKQFPKGSMLPKIE
                     AALQFAKSGKEAIICALDEAVDALAGKAGTRIVLK"
     gene            complement(10323..11102)
                     /locus_tag="PTC08_000559"
     CDS             complement(10323..11102)
                     /locus_tag="PTC08_000559"
                     /inference="COORDINATES: protein motif:HMM:NF022834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2877 domain-containing protein"
                     /protein_id="HDK5682089.1"
                     /translation="MIYYASAVGSVVLALLKETTTWHVHSLFKKGFNLINQNDVIIFI
                     GTNENGSFPFGISVDEQTKKKMMSHIQRNDEFCVNQLKLQHAKFSIDINTTIIEPRQN
                     FHDADVESLRMSLLAYDFSNYADSDFSLSRMTALKRSLSDANETVLPQLEFLVGRGNG
                     LTPTGDDILVGLLYSHFIQPFIAPVHLQTIKTVMAQERTTIISKNFINLALQGIFSSR
                     ISQFNDTVSDEAIQALIEVGSSSGKDILYGIYIGLIKGVNK"
     gene            complement(11099..12364)
                     /locus_tag="PTC08_000560"
     CDS             complement(11099..12364)
                     /locus_tag="PTC08_000560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002465178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1116 domain-containing protein"
                     /protein_id="HDK5682090.1"
                     /translation="MAFKTIDEANDAVIQKMIAAAPFLTDVVPAKSVIPELKEHVLLH
                     AGPPIKYENMTDPMQGSCVGAILFEGWANDEASARELLENNRITFIPCHHVNSVGPMG
                     GITSPNMPVLVVVNKENGNEAYCQMNEGIGAVLRFGAYNTQVIERLEWMRDVLGPVLS
                     KALKTFEEGLNVNVLIAKAIAMGDEFHQRNIAASLAFLKEVSPAITELENVSSAEKTE
                     VIQFLADTDQFFLNIAMATGKAMMDAARTIQHGTVVTAMCRNGENFGIRIAGMGDEWF
                     TAPVNTPQGLYFTGYSADDANPDIGDSAITETIGVGGMAMIAAPAVTRFVGSGGFQDA
                     LETSNQMMEICVGENPNFIIPTWDFKGACLGIDARKVVETGITPVINTGIAHKVAGFG
                     QIGAGTVHPPIACFEKAIVAYAKKLGFEA"
     gene            complement(12364..14118)
                     /gene="fdrA"
                     /locus_tag="PTC08_000561"
     CDS             complement(12364..14118)
                     /gene="fdrA"
                     /locus_tag="PTC08_000561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017474235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA synthetase FdrA"
                     /protein_id="HDK5682091.1"
                     /translation="MLYTIIKENTYQDSIVLMLLSNKLNSIDGVKKVSVMMGTPANKD
                     IFRASGLGSDELDQANPNDIVVVIDTEDEAKVTEVDEMVEATLKGENSVDATSNEQEA
                     HNWKRAMELANNPNMALISIPGQYAAMEAENALNEGLHVFMFSDNVPKADELRLKEMA
                     HEKGLLVMGPDCGTGIIHSVPLAFTNIVKEGNIGLVGASGTGIQEVTTIIDRERTGVT
                     NAIGTGGRDLSTEIGAITMLDSIKALNQDPQVKVITVISKPPAKEVKDRVLNVLRNIE
                     KPVVTLFLGDKPTYHEPGIYHAYTLEEAARVSVQLSNGEVPNFKPSILTDIDVNFAEG
                     QIGIKGFYSGGTLAYEAAMLINHTLKNTKSEKQEGYMLKTEAHAVIDLGDDIYTQGKP
                     HPMIDPEKRIEMLEASIEDETTAVILLDDVIGNGSHDDMATELAPTISKAIQHAKDRG
                     RNIVVLATVVGTEQDHQGYQQQIDILKRAGAVICETNDQMVRTAIHLLGHDVQQPERE
                     EKAFDKEVVDLTVSDEIIQLLNVKPSIINIGLKSFSEAIRDSGAECVQFNWKPIAGGD
                     EKLMKVLQFLNHLERETV"
     gene            complement(14145..15194)
                     /gene="allD"
                     /locus_tag="PTC08_000562"
     CDS             complement(14145..15194)
                     /gene="allD"
                     /locus_tag="PTC08_000562"
                     /EC_number="1.1.1.154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003180376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ureidoglycolate dehydrogenase"
                     /protein_id="HDK5682092.1"
                     /translation="MKVTKQALFDLIQDKLMKAGLPEEAAYDVADVLTFADHRGIHSH
                     GAVRVEYYAERIAKGGITIHPQYQFKKTGSSTAVLDGDNGPGHQVAKIGMQHAIDMAR
                     ESGIAVVGMKHLSHSGALGYFVEQAAKEGMVALSMCQSDPMVVPFGGTEPYFGTNPIA
                     FSAPTSDERIITFDMATTVQAWGKVLDARSKGESIPDTWAVNAKGEPTTDSRDVHALL
                     PVAGPKGYGLMMMVDILAGSLLGVPHGMHVSSMYEDLTKGRDLGQLHIVINPSYFTDA
                     DQFKRQVAQMLDELKAQPAAPGFSEIYFPGERGRLRSKKYDQEGIEIVDAIYDYLVSD
                     DVHYDRYHGKNRFAE"
     gene            complement(15212..16243)
                     /gene="allD"
                     /locus_tag="PTC08_000563"
     CDS             complement(15212..16243)
                     /gene="allD"
                     /locus_tag="PTC08_000563"
                     /EC_number="1.1.1.154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ureidoglycolate dehydrogenase"
                     /protein_id="HDK5682093.1"
                     /translation="MENENLTYIEGRQLRQLMKEKLVAAGLPVAQAEKSADLLIFADE
                     RGIHSHGAVRMRYYAERIVKKGYNLEPQMKFEQTGPSTGVFHGDNALGHFVAYEAMQH
                     AIDLAKESGLGAVGIYEMGHSGAIGYYAKQAAEAGMVALTMCQSDPMVVPYGGTKPYY
                     GTNPIAFASPRLDETPILFDMATTVQAWGKILDAQSKGRTIPDTWAVDDKGHPTTDPN
                     QVSALLPMAGAKGYGLMMMVDILAGSLLGLPHGMHVTSMYKDLSEYRRLGQFHLVINP
                     SFFGEQDVFLNKVEQMVKELHQIQPANGFDNVYYPGEIQETVAKTYAQSGIPIPTDIV
                     QYLESPTLY"
     gene            complement(16259..17047)
                     /locus_tag="PTC08_000564"
     CDS             complement(16259..17047)
                     /locus_tag="PTC08_000564"
                     /EC_number="3.5.3.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016999003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(S)-ureidoglycine aminohydrolase"
                     /protein_id="HDK5682094.1"
                     /translation="MGYLNHNQGYREGLLETRSVIKKDNYAVITPDGVVNNVVPGFED
                     CDVTILGSPRLGARFVDYLVTVKNNGGNKQGFAGDGVQSFVYVVYGEIKAYAGEQVYT
                     LKQGGYLYVPPHLKLTFENNNNGEDSRLFLYKKRYQPLEGHSPEIVSGNVNDLKQTPY
                     EGMDEVLIQDLLPADIAYDMNIHILSFKPGASHGYIETHVQEHGAYVLSGRGMYNLDN
                     DWLPVDKGDYIFMGAYVPQATYAIGLEEPFAYIYSKDANRDVEI"
     gene            complement(17073..18296)
                     /gene="allC"
                     /locus_tag="PTC08_000565"
     CDS             complement(17073..18296)
                     /gene="allC"
                     /locus_tag="PTC08_000565"
                     /EC_number="3.5.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006636738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="allantoate deiminase"
                     /protein_id="HDK5682095.1"
                     /translation="MNILSEFEKMDQLFTSFGGLEQGGITRLLYSKEWKAAVDQLIQI
                     FEQEGFEVQKDAVGNISGRLVGTTHPEETVLSGSHIDTVVEGGHLDGQFGILAALIAT
                     KYLKEKYGQPKRSIEVLSLAEEEGSRFPFTFWGSKNFFNLADKKDVENIADAEGVRFV
                     DAMHEAGFDFRKDNKVRDDIKAFVEIHIEQGKVLEVEGKQIGVVNGIVGQKRYTIRLK
                     GEANHAGTTPMGLRRDAVVAFSEIVQTLTARAEEIGDPLVLTFGHVTPTPNTVNVVPG
                     EVEFSVDTRHVDQKVLNTFADEIEKTIRSVAERNQMEVDINLWMDEAPTLMNDKIIEK
                     VLNAAEKLADGNYKVMPSGAGHDSQIFAKYVPTGMIFVPSIDGISHNTAEETKTEDLI
                     KGIEVLAEVLYQLAY"
     gene            18470..19288
                     /locus_tag="PTC08_000566"
     CDS             18470..19288
                     /locus_tag="PTC08_000566"
                     /inference="COORDINATES: protein motif:HMM:NF019474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HDK5682096.1"
                     /translation="MTEKSIIETFGSTFKHTGRWYPTTNADAPLGTLLYIHGGGLVFG
                     KMDDLPEAYMNILRRSFNVFTVPYRFIPEAKLTDIVEDVTAAYDHIAKQQDSPIYVMG
                     RSSGAYLASLLATLRPVQGLILFYGYYDFKHAAFHRLPTDQQHIASMLNDKLEIELTQ
                     DEPISNEETPIRYLLYLYYRHRDIWLTRMGKHIDLYELQHSDLKTLPPTFLAHCTFDP
                     DVPFEYSQTMAHHIPQHHLEAIPKHAHDFDRQVTEDNINLYQKATNFLWQQQSQ"
     gene            19301..20545
                     /locus_tag="PTC08_000567"
     CDS             19301..20545
                     /locus_tag="PTC08_000567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M20 family metallo-hydrolase"
                     /protein_id="HDK5682097.1"
                     /translation="MKLTRVLKTLNSFNNLGLSTSLKGINRLAFTHNERLAALKFSMY
                     CQEEGLKVHFDGIGNVIARREGRYPDLPPVLIGSHIDTVPEGGRYDGLLGVVGALEFV
                     RYLNDQQIETDHPIEIVAFTCEESARFNVATLGSRYYCGNLSKEDMENLSDQDGKTLY
                     EVIQETVTTKAADLSSIPQPKAYIELHIEQGPVLEKTATDIGIVTHIAAPQRFKLTLQ
                     GVTSHSGATPMMMRQDALTCASEIITHIEAIGQRYQESGLVATVGHIDIRPNTMNAIP
                     GEATLFIDLRSIDTTARDEVATAIEKAIVTTTRKRDITYTLTTLTKETPTNLSQPIGQ
                     IIESICQTNEISYQYLFSGAGHDAMQLAKCCPTSMIFIPCEKGISHSPDESVTDDQIR
                     IGVDVLIQTALQLSYKTTQLSS"
     gene            complement(20639..22003)
                     /gene="allB"
                     /locus_tag="PTC08_000568"
     CDS             complement(20639..22003)
                     /gene="allB"
                     /locus_tag="PTC08_000568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="allantoinase AllB"
                     /protein_id="HDK5682098.1"
                     /translation="MKFDSIIKNGRVILQDGEANVEIGVKDGVIAAIGQELGDADTII
                     DAQGHIVSPGMVDAHVHITEPGGGYRDEWEGYETGTRASAKGGVTTIVEMPLNQVPAT
                     VDHESIQAKFEAGKGKLSVDVASYGGLVPFNLNGGIQELDQDGVVAYKCFVATCGDRS
                     IDGDFMNVDDYSLYEGMKQIAKTGKILSIHAENAAITDALGQQAYENGETTLAAYVDS
                     RPVFTEVEPIRKIILFAKETGCRVHIVHVACEEGVEEVKKAQAEGVDITCETCTHYLY
                     FYKEELDQIGPVVKCSPPIREKSRLEGMWQRVLNGDISFVTSDHSPCTPDLKDKDNAF
                     EAWGGIAGVQNNVDVLFDEGVNKRQMSLQRFAEIIAHNPAKRFGLTNKGTIQVGKDAD
                     FVFIAPNTSYTLQAEDLAYRHQISPYIGREIGARVVKTILKGHVIYDIDTGLSDEKHG
                     AFIS"
     gene            complement(21993..23450)
                     /locus_tag="PTC08_000569"
     CDS             complement(21993..23450)
                     /locus_tag="PTC08_000569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative allantoin permease"
                     /protein_id="HDK5682099.1"
                     /translation="MALHQYDPTFYEQRGYNKDIMPKGPEQRDTSAFNFFTLWMGAVH
                     NIPNYTAVGGFLILGLSPLQVMFALVISSLLIGILLAVNGYAGSKYGIPFAIHLRLTY
                     GDIGAKLPGILRGVIAGIAWFGLQTFAGSVALIIVLNKIFPGFSDIGGGHKFLGITVS
                     GFIAFMLFWLINFAIGFGGGKILNKFTAVLNPLIYIIFGGMTIWGIKAGGGFSNILNY
                     ELSTNGSTAYPVLLGFFIVFNSLLAVWAAPGASVADFTQRAKSTKAQIIGQISGVVVA
                     HVLFAFSSICILIGGSIFYGKQEWNILNIIERWDSNIAIVFAVGILLMTTISTNATSN
                     IIPAGYQISALFPKKISYRKGVVIAGIVSILIMPWKMMENNDSIFLFLNMIGAILGPV
                     AGVMVFHFYVVAKQKINLEKLYFDMNDVSKSVQRFNMSAYVATIIGVIVSSLGFIPQL
                     GIIGQLSWFIGFFIAGLCYLALNQMLRRKGDYDEI"
     gene            23593..>25172
                     /locus_tag="PTC08_000570"
     CDS             23593..>25172
                     /locus_tag="PTC08_000570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003180365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PucR family transcriptional regulator
                     ligand-binding domain-containing protein"
                     /protein_id="HDK5682100.1"
                     /translation="MATLEDILQVEQFSGLSVLNDKADLNRIVESVDITETPDVMNYT
                     TANALLLTTGMIFQNNQRALIDFIRELHNVPIAGLAIKLSRFLQKLDQEVIDFANELN
                     FPLIEIPSHWKLGPLTHHISSFILDEETEKLYYALDIQQKMNRMLINEYPVSTMIHQM
                     AKMLKVPVLLINPFHLVESKGGHFENDQKATQQALKFFHNTYLEQKLENEHDFQRDYV
                     VLEVPAFKYFPYYLLIAKAYTLSYPFSHLALEQAINTLSFAIYKNSKIRATEQHESSQ
                     FFTSLMYSKDPAPIDMRMNPEFFKRYNLKHSNYYQVIICGVDKEEGIENSIYLSERHQ
                     LTFDWLYSMMTDLDNDISVFGLNDQNKYAILLQKRHTYYLDYCRFLQKEYQKHFNSTI
                     SFGIGHEVTDFKQIPMSFVEANDIYDTYVEKEEKEFLNTYKSKNVEELLQLVPTDKLR
                     PFVTYTLGPLAYPDNPKDQELKKTLKTFVEHQCDITQTANIMFIHRNTVKYRIKKCEE
                     LLNMDITHPKNSLDIRIA"
BASE COUNT         7908 a         5319 c         4198 g         7747 t
ORIGIN      
        1 acgaccaaga tgaagtgatt gcggcttgtt tattaaccga agcacgtgca cttaaatttt
       61 ttaaatattt ttatacacac cgtggtccag tgttagatta caacaatctc gaacttgtcc
      121 aattcttttt tgaacacctc acacaatact taaaaaaaca gcgttgcctg tatgtgttaa
      181 tcgatcctta tgtgcgcaac cacattcgtg acgcaaaagg gaatattacg caacacttcg
      241 agcatgctca acttttcaaa acattagatc gtcttggcta caaacatcaa ggttttccaa
      301 taggatactc gagtcacagt caaatacgtt ggctttctgt acttgaccta aaagataaat
      361 ccgaacagca acttttagaa gaaatggatt accaaacacg acgtaacatt aaaaagacat
      421 atgaaatgga tgtccaagtc aaaactttac ctatcgaaga aacagagcgc ttttttaaac
      481 tttttcaaat ggctgaagaa aaacatggct ttacttttag agacttgcct tattttgaag
      541 aaatgcagaa aatgtatgcg aaaaatagta tgatcaagtt ggcgtttatt gatttaaata
      601 accttttgaa gaagcaaact gagaaattag acacattaaa agcgacaatt gcagaaactc
      661 aagcggcgtt agaaagtcat cctaactcta agaaaaacaa aactaaatta aaacaaactg
      721 aacaacaact acaagcacaa gaacgcaaaa ttgaaaaaac gcgtcaatta atcgttgaag
      781 atggcgaaat attagattta gctgcggcga tttatattta caaccgtcat gaagtgtact
      841 atttatcgag tggatcgaat cctaagtaca atgcgtatat gggcgcctat cgattacaat
      901 gggacatgat tcagttcgcc aaacaacaag gcattgaccg ttataatttt tacggtatta
      961 caggtgattt tacgaagcat gcagaagatt acggtgtaca acgttttaaa gaaggtttcg
     1021 gggcacatgt agaggaatat gttggtgatt ttgtcaaacc gatcatgcca acgatgtacc
     1081 gattatcaca gttgttgaaa cgatagaggg catggtgaaa gttcaatgat atcctagctc
     1141 tatcaaaata ttaaaccacg catctgctga actagcgggg atgcgtggtt tatttttatg
     1201 tgttttgaaa gccgttttat cgcaaaaacc agtagtcttc cttttcacat ttgagatacg
     1261 tatattctgc tggcgtgtca ccattctcct taatattatc gttcatatga tctctcaaat
     1321 cccacacttg atgaataaat gtagtcagat cgccacctaa cagacgtgac ggggcttcca
     1381 tattcaacac tttttcaact tgtttttccg atatcgccat catgtctgca agctgtgctg
     1441 ttgtcagtgt agattgtgcg aaatgtgctt ttaactcttc gcgtgtcgta cgtcgttggg
     1501 ctcgatttaa tgacatattg atccttcttt ccattcatat gatttgtcgt ccttatgatt
     1561 atcatttata ataaacggac agttatccgt ttgtcaaatt aaactgccga agtaggtgaa
     1621 atcatcatga gaaaagatgc gattgaaaac cgccaacgga tcgaacaaca agcgaaaatg
     1681 atgtttgaac gggatggcgt cgaccaagtg agcatgaatc aaattgctaa agcgttgaat
     1741 atcggcatgg ggacacttta tcgccacttt gaagataaaa gcgcgctctg ttatgcattg
     1801 gtgaacaatg actctgcaca attgttagca gatcttgatg cgattcaatc acaaaatgat
     1861 gacgtccaaa ccattttcac acaggcgatt gatacgtttt tacaatttaa aacagatcat
     1921 cgcgaattac tccattgtat cgaaatgagt caaagtaaaa gcgattttag gcagaccctt
     1981 ctttttcaag cgctccatca ctacttttat caattaatgg atcgcggtga aaacaagcaa
     2041 cacttgacgt ttcaagtcga tacattactg aatacattag cgacacaaaa ttatattttt
     2101 cagcttgaag aacgacaact gacgaatgta gaactacgtg atcaactcgt cacattattt
     2161 ttaaactaat aaaatgaaca tggagggttt taatatggaa actttaacag tggaaggtgc
     2221 aaaaatccgt taccatcaag tcggtcgagg tcctgtactt atcttcgtcc caggcgccaa
     2281 tgggacaggc gatatctttt taccattagc tgaacaattg aaatcacatt ttacagtcgt
     2341 agcaatcgat cgccgtgact atggggaaag tgaacggacg acacccctgc ctacacaagc
     2401 acaacaacct gacgacgcga cacgtgtgaa acaagatgca gcagatgtgg cagcactcgc
     2461 acggcattta agtgatgaac cagtatatat tttaggttcg agttcgggcg cgattgtcac
     2521 aatgcatgta ctgaaagact atccggatgt cgtgaaacgt atcgcttttc atgagccatc
     2581 gatcaataca tttttaccga atagcacgta ttggaaagac aaaaatgatt taatcgtcca
     2641 tcaagtgctc actgagggat tacaacaagg gatgcagact tttgcgcaaa cattgaacat
     2701 cgcaccgatt gatgctaaaa gtatgtcgga accggtttcc gatgacgatg cagctcaaca
     2761 caaacaatat gaacgtatgc tgttttgggc agaatatgaa attcgtcaat atacacactc
     2821 cgacattacc gttgcagatt tagcaccaca cgctgacatc attacgctat tgaacgggac
     2881 agattcgaaa gggtcatttc cacaagatgt caacgcgtat ctccatgacg caggtaatct
     2941 tactttgcgt gacattccag gcggtcactt agggtatgtt caaaaacctg agggcttcgc
     3001 gaacgatctg cttgagatgt ggacctagag tcagtatgaa aaaggcctcg atacgtgaac
     3061 aaagtcattc atcccatcga ggtctttaaa acaatcatta atcttcaaaa gcacggcgca
     3121 tcgcattgag tcgatcgttt aaaatttggt ctcgtacacg cgcacctggc acaagctcac
     3181 ctaaatgata gagaccagga taaatgtgca actcagtcga gacacctgca tgcaataagt
     3241 tttgggcata cgccatcact tcatcgacaa acaaatctaa actgccaatt gtgatgaagg
     3301 ttgccggaag cccttcaaaa ttttgacgtc gcgctggtac ggcatacggc tcgggggtgc
     3361 gcccatcaac tgggtgaccg agatacattt cccatgcaaa gcggttcata tcgcggttcc
     3421 aaccgacatg acccgcataa ggattcgacg gcgcttccaa tactgtttga tcatctagca
     3481 tcgggatgtg caagttttgg aaaataatgt ccacttcacc ccgatctaaa gcgagttgtg
     3541 caagacttgc cgcaagcata ccaccagcac tattaccacc cacagccaat ttcgaccggt
     3601 tgataagtag agtatctgct tcgtcatgca tccatttcaa cactgcataa cacgtttcta
     3661 attgcccgga aaatatcgtt tcaggtgcca actgataatc cacagagaca acgacacatc
     3721 ccagttcgtg cgcaatcctt gcattatcgc tattatccaa atgtgcacca ccagacacca
     3781 taccaccgcc atgcatatac aaataacccg gcatgttatt caacactttg ttgggtcgaa
     3841 atagtatcac atgaatcagc tcgtcttcat aagggacatc cacatcttca atcgttacgt
     3901 caagccgggg atcaatcgtc gtcttcgcat gactgagaac attggcccga tagtcctcca
     3961 aattgtcacg cgttaacttg agatgtggca tcgattttgc gacatgctgt aaatccacat
     4021 ctacaccatt cagatgttgc cgttccatat taagacttcc cttcaaccct tattgttctt
     4081 gtttttgatt ttctaatttt ggaatacgta catctaaacc aaaatatgct ttcaataatt
     4141 cacgataatt atccgcagtc accggaattt tttctttacc gtctttagtt gttaaagtca
     4201 cattgttcag tgacatcgta ttatggccct ctggtgtttt cttattaatc atcaacattt
     4261 ttttgaacgc atatttcgga tgattaatcg taaaatcata acgtgcatcg aagtaaccga
     4321 gttctcgatc gacattttca aaaaagagca agtccgtcca ctcagtactt tcaccatcat
     4381 ttttaatcgt ttgcacatag tacgcattgt cttggtcttc agcagggata atgcgataaa
     4441 tatcatcttc gtcgtaaaca tacgttccat ctaacggaat cggttgactt ggaaaatgac
     4501 cgaaacctgt atccgcaata taatctttgc catcaatggt cacgagtgtg gttaagtgcg
     4561 tatccatttc tttccaatct ttattaggtg gcttcacata accagaaagc agtttcgtat
     4621 caaaaccacg gtctttaaga tatgcattcg ttacaagatt attttcatag caaagtccac
     4681 cgcgctgttc attgacaaac ttatctatat ttttttcaac atccattgta attttgtcac
     4741 cattgaacac atcaatcgcc tcgaaaggaa tgttcaacat aaaatgataa ataaactttt
     4801 gtaactcttc ataatgaatg cttttccata tcttcttgat taatatcgat ataattttca
     4861 agatctttaa aattcatgtc gctctccctt tcttcaataa aatagtctta ctttgattta
     4921 taaaaacgcg ctacaattcg tctcccattt atgacaattc catctagctt aatccatacc
     4981 ccattccact taattgaaaa gtgcaattaa acaatcaatc attatatgaa tatgataaac
     5041 ttctgcaatt atttttacaa acggaatgca ttccatataa caaaaccttt taatatcagg
     5101 ctttccaacg caaaaagaga cccgcacatg gacaagcgaa tctcttcaaa ccattatttt
     5161 catattgtat tttttattga tacagagctt ccctttcgat ttgatattaa gtttaaaatt
     5221 ttaaaacacc ccatcaattt atatactttt aatttgtcta tatcgaataa ataacatgct
     5281 cttatttgtc atttttgaca tgtttattcg aaatgataat gatacactta agttataaat
     5341 tgtgattatt ttcacataaa ggagtagatc atttatgaaa aaagtgttca ttgcgggagc
     5401 cattcctgaa gctggactgg aacaacttca agcacagttc caagtagaaa tgtatacagg
     5461 tgaaaaactc atttctcatg aagcattact tgaaaaagta cgtgatgctg atgctttaat
     5521 cagtttatta tccacacaag ttacgcgtga agtaattgaa gctgcaccaa atttaaaaat
     5581 tattgccaat tatggtgcag gttttaacaa catcgatatt gaagctgcac gtgaacatgg
     5641 aattgacgta acgaatacac ctattgcttc tactaatgct actgcagatt taacaatggg
     5701 tattttacta gccgttgcac gtcgtatacc tgagggtgat cagctttgcc gtacaactgg
     5761 atttaatggt tggtctccac ttttcttcag aggacgagaa gtatctggta aaaaaattgg
     5821 tatcatagga ctcggctcta ttggaacagc tgtggccaga cgtgccaaag gtttcgatat
     5881 ggaaatttta tatactggtc ctacgcgtta tgaagacaaa gaagctgagt taaatgcacg
     5941 ttatgtaact ttagatgagt tgcttgctga atctgatttc gtcactatta atagcgcata
     6001 taatgattca cttaaacata tgattaacta tgagtccatt aaaaaaatga aaccgacttc
     6061 ttatttaatc aatgcctcac gaggacctat cgtacatgag agtgagttag ttcgtgcact
     6121 tgaggataag ttaatagaag gtgcagcact tgatgttttc gaatttgaac ccgaaattac
     6181 tgaagaatta aaaactatga aaaatgttgt cattacacca catattggta acgcaacatt
     6241 tgaagcaagg gatatgatgg ctaatattgc cgcaaacaac gttgtattag cgctcactga
     6301 tcaaaaaccg aaatatattg tcaatgcata ggaggcctaa acatgtcaca agccaatcag
     6361 cgtttcttta aaatgaaaga attggaatct ttttctgatg aagcagctaa aaagacgatt
     6421 ttttatcaat ctgagcactc agctggtgca atttggtgtt taaagcctgg tcaaacatta
     6481 ccttgtcata cacataaaaa cgcagatgat gtatggattg caattaaagg agaaggtaca
     6541 ttttatacaa acaatcatga aaagaaaacg ataaaagcag gcgatatttt cgtgtcatta
     6601 ccaggagatg cacatggtat gactaacaca ggagatgaag atttcgtcat gttaggtttt
     6661 gcgacaccaa tgccacttga tttcattcct tacgaagaaa attaaatatg attaaactaa
     6721 ggggcaaatt caagaggtta ctaaaaaaca tatacaattg aaccatgtat attcgaataa
     6781 ataacatcac aatatctaga ggctagggta actgttccta gcctctattc aaaatgttct
     6841 gtagctatta cgtaaaccag ttttatttca ttacgttctt ctaatgccga agaattgtaa
     6901 atacgttaac aatctccaaa tatattcaag tgggccatat ctaaagcatc gtagccataa
     6961 catagaaaac agcatttgga acacaataat caataatgat acgacacctg acattgcgat
     7021 acctacagac atccattggc cgaccagtaa aatcaatgca gtatttaata aatagttcgt
     7081 taaagccatt tgaccataaa atttaaatgg gaccaaaacg cgcttcatta tagaactttc
     7141 taatatcatt acgaagaata aaatatagaa tagcgaaatg aacggtgctg tatagacagt
     7201 caggtcagaa taaaaattat tgcgatcagc ataagctttg atgtccattt gatcttttac
     7261 taaatcaaac gtaggcagga tgtaaaaata gtgtaagagt actaaagaga taacaaagcc
     7321 gatcaatgaa aagacaaacg ttattcgcaa tgctttctta tgctgataaa tcgttcgatg
     7381 tatgtcatat tgtccaatga cgtaacctaa tacaaataat gctggaacaa gtgtcagttt
     7441 gttgccactg agcgcaccga caataagtaa gatgagccct atcactaaat taatgcgtct
     7501 attcacgaag gtaagaggga gtaggaatag acctatgatg gaataaaata aaagcgcttc
     7561 tccgggttgg aaaatttggt ggacgatacc gattaacagt aacaccacgc tacgtctcac
     7621 atataacgta aaaggattgg catttttgtt tttcgcgtta tggaaaaaga tataaaatcc
     7681 tataccaaat aataatgaaa aaatggaaaa aaacttcgct tccacaaaaa tattcaaata
     7741 cttgttgtaa agtacatcaa ggtggctttc atacatcact gaaggaggtc catgatgata
     7801 tgaaaaattt tcaaggatag gtaaaatatt ggcaaaaata ataccgaata gtgccaaacc
     7861 tcttaaataa tctaaaactt caattctctt ttttatcgga ttcataaaaa tctccttaat
     7921 aaatttatga gatttatatt acatttgaag ttccaaacat tcaataagtc ctacgccgga
     7981 ttttctgtaa tcatacaaaa aaccgagcct ttcgtaattg ataacgaact tctcggtttt
     8041 ctactatatt ataaatattc ttctatataa cgatctttag atgaaattag tccaacgaaa
     8101 agaaatccac acgccataat catgactaaa atcaatggaa tacgccatcc gtttgcaata
     8161 tcatgaatag tgcctatcac aaatggacca gaagctgcaa caatataacc aatagactga
     8221 ccaaatcccg ataaagcaac acttccatcg cttgtattcg cacggattga aaagaatgtc
     8281 atacaaatac taaatgctgc acctaatgac aagcctaaaa taatcattga tagaaataaa
     8341 agcgataccg gtaacgtcaa tagagtaatt aatcctgcca tatatagtat gaaaataatc
     8401 cacacaagtg tactttgaga tttcattttt gaggcaatga ttggaaaaat aaacgtcatt
     8461 ggtacttgtg caaattgatt taacataaaa taataacctg ctgtgcttgg tgacaaacct
     8521 ctatcaataa cgattaaagg taaccaagcg acgatgacat aaaaaatcat agactgaaaa
     8581 cccattgtca atgcaatcgc ccaagcaagc ggcgtccttg aaactttcaa acgctgaaca
     8641 ttttgccttt ttgtctcatc tttttctggt gtaaactgtt ctatagataa acgactgtta
     8701 tgcttacgcc agataataag cgcacatata caaagcataa tccaaaaacc taacgacgct
     8761 ttgtatccaa aagaaccgat ttgagataat gggtagctaa gtcctccccc aagcccggcc
     8821 gtaaaattca ttgtcgcact ataaattcca gtaatcatcc caatttgtgc tggaaaaagc
     8881 cattttgcat aacttggcaa tatgacgttc ccataagcga tcgcaacacc aataatcata
     8941 gtaccaatga taaaaaattc aattgtaccc aaaatacgca caatcaaacc aacgattagc
     9001 aatagcatgg cacatgttac taaagttgcc atcgaaatgc gtgccattgt tctcgctacg
     9061 aagagtgata caataccaaa tataactaga ggaatcgttg tcaacaagcc agctagtgca
     9121 ttattaatgt gcagaccatt cttaatatca tcaatgacag gccctactgc tgttaatggt
     9181 gcgcgtagtg tcgaagcaac aagaactatt ccaatgacaa cccaccagtg atcctggatt
     9241 ctaaaaatgc gcgttttctt ttccatattt cacaccctcg ccatttccat ttcatattga
     9301 ttacatttga tgagaaaaac gaacgttcac ggttgtacaa ttctccgtgt gtgcgttcgt
     9361 tctcatgcta gcgattgaaa cgctatatta ttttaataca attctagtcc ctgcttttcc
     9421 tgctaatgca tccacagcct catctaaagc acaaataatt gcttctttac ctgacttcgc
     9481 aaattgaagt gcagcctcta ttttcggaag catgctccct tttggaaatt gtttttcttg
     9541 aatatattgt tcgatttctt gaacagatac ttcatttaac gtagcttgat taggttgacc
     9601 atagttaata taaacgttcg gtacatccgt caacatcata aaaacatctg cttctacttg
     9661 ttcagctaat ttaagtcctg agcgatcttt atcaataaca gcttccaatc catgaagttg
     9721 ttgttcttca tctttataaa cagggattcc cccaccgcca gatgatatga caatcgtatg
     9781 gtctagaatt tgtttgattt cgtctacacc atgaatgcgc atcggttctg gtgaaggaac
     9841 gacgcgtcga taaccacgtc ccgcatcttc aaccattgga aacccttgtg cttccatttt
     9901 tttagcttct gcttcattga aaaaaacgcc aatcggtttt gttggtgatt caaatgctgg
     9961 atcttttgga tcaacctcta ccattgtcaa taaacttaca acattgtcag tcatatggcg
    10021 cttttgtaaa tgatttttga gacactgttc catcatataa ccaataagac cttgtgattg
    10081 cgcgttacaa gcatcaattg gcgatggcgg aattgcctct ttagccgctt cgttttgtgc
    10141 aataatatta ccaacttgtg gaccatttcc atgtgtcaca ataatctgat gaccagcttc
    10201 tttaatttct accatatgac gtgtcgcatt ttctatatta tgatattgat tttcaaaggt
    10261 tggtgcttgc ttcggttgta aaatcgcatt ccccccgagc gcaatcacta ctttttttcc
    10321 catcatttat tcactccttt aattaaacca atgtatatac catatagtat gtctttacct
    10381 gaacttgacc ccacctcaat aagtgcttga atcgcctcat cagaaaccgt atcgttaaac
    10441 tgactgattc tcgaactaaa aatcccttga agtgcaagat taataaagtt tttactaatg
    10501 attgttgtac gttcttgcgc catcactgtt tttattgttt gaagatgtac tggcgcaata
    10561 aatggttgaa taaaatggct ataaagcaaa ccgacaagaa tatcatcacc agttggcgtt
    10621 aagccattcc ctctccccac aagaaactct aattgaggta aaaccgtttc gttagcatct
    10681 gaaagagaac gtttcaatgc tgtcatccgt gataatgaaa aatcactatc agcataattc
    10741 gaaaaatcat acgccagcaa actcattctt aatgactcta catcagcatc atgaaagttt
    10801 tgacgtggtt cgatgattgt cgtatttatg tctatagaaa acttcgcatg ctgcagttta
    10861 agttgattta cacaaaattc atcattacgc tgaatatgcg acatcatctt tttcttagtt
    10921 tgttcatcta ccgatatacc gaatggaaac gagccatttt cattcgtacc aataaaaata
    10981 atgacatcgt tttggtttat tagattaaat ccttttttaa ataggctgtg tacgtgccaa
    11041 gttgttgtct cttttaataa agcaagtacg accgaaccga ccgcacttgc gtaataaatc
    11101 atgcttcaaa tcctaatttt ttagcatatg ccacgattgc tttttcaaaa catgcgatag
    11161 gtggatgcac agtccctgca ccgatttgac caaaaccagc aactttatgt gcaatacctg
    11221 tattaatcac tggagtaata cctgtttcga ctactttacg tgcatctata cctaaacatg
    11281 cacccttaaa atcccaagtt ggaatgataa agtttggatt ttcaccaaca caaatttcca
    11341 tcatttgatt acttgtttct aaggcatctt gaaaaccgcc tgatccaaca aatcgtgtta
    11401 cagctggtgc tgcaatcata gccataccac ctacaccaat cgtttctgta atagcagagt
    11461 caccaatatc tggatttgca tcatcagctg aatatcctgt gaagtacaat ccttgtggcg
    11521 tattaactgg tgctgtgaac cattcgtctc ccatacctgc aatacgaata ccaaagtttt
    11581 caccattacg gcacattgca gtgactactg taccatgttg aatcgtacgt gccgcgtcca
    11641 tcattgcttt accagttgcc atagcaatat ttaagaaaaa ttgatccgta tcagctaaaa
    11701 attgaatgac ttcagttttt tcagcgcttg aaacattttc taattctgta attgctggtg
    11761 aaacttcttt taaaaatgct aaagacgccg caatattacg ttgatgaaat tcatcgccca
    11821 tcgcaatggc ttttgcaatc aggacattca cattcaatcc ttcttcaaat gttttcaacg
    11881 ctttacttaa aaccggacca agaacatctc tcatccattc caatctctca ataacttgtg
    11941 tattgtatgc accaaaacgt aacactgctc caataccttc attcatctga caataagctt
    12001 cgttgccatt ttctttattt acaacaacaa gcactggcat gttaggtgat gtaatccccc
    12061 ccataggccc tactgagttg acatggtgac atggaataaa agtaatgcga ttgttttcca
    12121 ataattcacg tgcacttgct tcatcgtttg cccaaccttc gaaaagaatt gcacctacac
    12181 atgaaccttg cattggatct gtcatattct catatttaat aggcggtcct gcatgtaaaa
    12241 ggacatgttc ttttaactct ggaataactg attttgcagg aacgacatcc gttaaaaaag
    12301 gtgctgccgc aatcatcttt tgaattactg catcatttgc ttcatcaatt gttttaaatg
    12361 ccattagact gtctcccttt ctaaatgatt taaaaattgt aagactttca ttagcttttc
    12421 atcgccacct gcaataggct tccagttgaa ttgtacgcat tccgcaccac tgtcacgaat
    12481 ggcttctgaa aaacttttta aaccaatatt aataatgctc ggcttcacat tgagcaattg
    12541 aataatctca tcactcactg ttaaatccac aacttcttta tcaaatgctt tttcttcacg
    12601 ctcaggttgt tgtacatcat gacctaataa atgaattgct gtacgcacca tttgatcgtt
    12661 tgtttcgcaa atcacagcac ccgcacgttt taaaatatca atttgttgct gataaccttg
    12721 atggtcttgt tctgtaccga caacagtagc taatacaaca atgttacggc ctcggtcttt
    12781 cgcatgttga atagcttttg aaatggttgg tgcaagctca gttgccatat cgtcatggct
    12841 accattacca atcacatcat ctaataaaat taccgcagta gtttcatctt caatagacgc
    12901 ttctaacatc tcgatgcgtt tttccggatc aatcattgga tgaggtttac cttgcgtata
    12961 aatgtcatca cctaagtcga tcactgcatg tgcttcagtt ttcaacatgt aaccttcttg
    13021 tttttctgat tttgtattct ttaacgtatg attaatcaac attgcagctt cataggcaag
    13081 tgttccacct gaataaaaac ccttaattcc aatctgacct tcagcaaaat tcacatcaat
    13141 atctgttaaa atagacggct tgaaattagg cacctcacca ttcgataact gtacagacac
    13201 acgtgcagct tcttctaatg tgtatgcatg ataaatgcct ggttcatgat acgtaggctt
    13261 atctcctaag aaaagtgtta caacaggttt ctcgatattt cttaatacgt tgagcaccct
    13321 atcttttact tcttttgcag gcggcttaga aatcactgta atcactttga cttgtggatc
    13381 ttgatttaac gctttaatgc tatctaacat tgttatcgca ccaatttcag tcgacaaatc
    13441 acgtccacct gttccaatgg cgtttgtaac cccagttctt tctctatcga taattgttgt
    13501 tacttcttga atacctgttc ctgacgctcc tactaatccg atgtttcctt ctttgacaat
    13561 attcgtaaat gcaagtggta cagaatgaat aatacctgtt ccgcaatctg gtcccattac
    13621 gagtaagcct ttttcatgtg ccatctcttt taaacgtaac tcatccgcct tagggacgtt
    13681 atcgctaaac atgaaaacat gcaatccttc attaagtgca ttttcagctt ccattgcagc
    13741 atattgtcca ggaatagaaa tcaacgccat attagggttg ttcgctagtt ccattgcacg
    13801 tttccaattg tgtgcttctt gttcattaga cgttgcatcg acactgtttt cacctttcaa
    13861 tgtcgcttca accatttcgt caacttcagt cacttttgct tcatcttcgg tatcaatgac
    13921 aacaacaata tcattcgggt tcgcttgatc taattcatct gagcctaatc cagatgctct
    13981 aaaaatatct ttattggcag gcgtccccat catcactgat acttttttca caccatcaat
    14041 cgaattcagt ttgtttgaca ataacattaa tacaattgaa tcttgatacg tattttcttt
    14101 tatgattgta tataacatgt tcttcctcca attttatttc gacttcattc tgcaaatctg
    14161 ttttttccat gatatcggtc ataatgcaca tcatctgata caagataatc gtatatcgca
    14221 tctacaattt cgattccttc ttgatcatat tttttactgc gcaagcgtcc tcgttcaccc
    14281 gggaaataaa tctcgctaaa accaggcgct gccggttgcg ctttaagttc atctaacatt
    14341 tgcgcaactt gacgtttaaa ttgatctgca tctgtaaaat aagacggatt aatcacaatg
    14401 tgaagttgac ctaagtcacg tcctttcgtt aaatcttcat acattgaaga cacatgcata
    14461 ccatgtggaa cgcctaacaa acttccagct aggatgtcga ccatcatcat tagtccatat
    14521 cctttaggcc ctgcaacagg caacaatgca tgtacatctc ttgaatctgt cgtaggctct
    14581 cctttggcat ttaccgccca agtatctggt atagactcgc ctttacttcg cgcatctaaa
    14641 acttttcccc atgcttgaac agttgtcgcc atatcaaatg taataatccg ctcatcactt
    14701 gtcggcgcac taaatgcgat agggtttgtt ccgaaatacg gttctgttcc tccaaaaggc
    14761 actaccatcg gatcagactg gcacatactt aaggcaacca taccttcctt tgccgcctgt
    14821 tctacaaaat atcccaatgc gccactatga gaaagatgtt tcataccgac aactgcaatg
    14881 ccagattcgc gtgccatgtc aattgcatgt tgcataccta tctttgcaac ttgatgtcca
    14941 ggaccgttat ctccatctaa aacagctgtt gacgaacctg ttttcttaaa ttgatattga
    15001 gggtgaattg ttattccacc ttttgcaata cgttccgcgt aatactccac acgcactgca
    15061 ccatgcgagt gtattccacg atgatctgca aacgttaaaa cgtcagccac atcataggct
    15121 gcttcttctg gtaatcctgc tttcatcaat ttatcctgta ttaaatcaaa tagtgcttgt
    15181 ttcgtgactt tcatacaatc tcctccattg cttaatatag cgttggtgac tcaagatatt
    15241 gcacgatgtc agttggaatt ggaatacctg attgtgcata tgtttttgcc actgtttctt
    15301 gaatttcacc cggataataa acgttatcaa aaccgtttgc cggttgaatt tgatgtaatt
    15361 ctttaaccat ttgttctact ttatttaaaa aaacatcttg ttctccaaag aaacttggat
    15421 taattactaa atgaaattga cctaatcgac gatattcaga tagatcttta tacattgaag
    15481 tgacatgcat gccatgtggc aaacctaata aacttccagc cagtatatcg accatcatca
    15541 ttaatccgta acctttagcc cccgccattg gtaaaagcgc actcacttga ttcggatctg
    15601 ttgttggatg tcctttgtca tcgactgccc aagtatctgg aatcgtacgc cctttacttt
    15661 gtgcatctag tattttgccc catgcttgaa cagttgttgc catatcgaac aaaataggtg
    15721 tctcatctaa ccttggtgat gcaaacgcaa ttggattcgt tccataatat ggctttgtcc
    15781 caccataagg cactaccatt ggatcagatt ggcacatcgt taatgccacc attccggctt
    15841 cagcagcttg tttagcataa tagccaatcg cgccgctatg ccccatttca tatataccga
    15901 cagcacctaa cccgctctct tttgctaaat ctatcgcatg ctgcattgct tcataagcaa
    15961 caaagtgtcc caaggcatta tcgccatgaa agacacctgt gcttggtccc gtctgttcaa
    16021 acttcatttg aggttccaaa ttgtatcctt ttttcacaat gcgttctgca taataacgca
    16081 ttcgaacagc accgtgcgaa tgaattcctc tttcatccgc aaaaattaat aaatctgctg
    16141 acttttcagc ttgagcaacg ggaagacccg ctgcaacaag cttttctttc atcaattgac
    16201 gtaactgcct accttctata taggtcaaat tttcattttc catgtcagtc acacctactt
    16261 aaatttcaac atctctgttg gcatcttttg aataaatata cgcaaatggt tcctctagtc
    16321 caatggcata tgtcgcttgt ggtacatacg ctcccataaa aatataatca cctttgtcaa
    16381 caggcaacca atcattgtcc aagttgtaca tgccacgacc acttaataca taagcaccat
    16441 gctcctgtac atgtgtttca atgtagccat gtgaagcacc tggtttgaat gataaaatat
    16501 gaatattcat atcatatgca atatctgcag gtagtaaatc ttgaattaaa acttcatcca
    16561 taccttcata tggcgtttgt ttcaagtcat taacgttgcc agatacaatt tctggcgaat
    16621 gaccttcaag aggttgataa cgttttttat ataaaaacag tcggctatct tcaccattgt
    16681 tattattctc aaaagttaat tttaaatgtg gtggaacata gagataaccg ccttgtttta
    16741 aggtatatac ttgttctcca gcgtacgctt taatttcgcc atatacgaca tatacaaatg
    16801 actgtacacc atcacctgca aatccttgtt tgtttccacc attattttta actgttacta
    16861 gataatcaac aaaacgcgca ccgagtcttg gtgatcctaa aatagtgacg tcacaatctt
    16921 caaaccctgg aacgacatta tttacaacgc catctggtgt aataacagca tagttatcct
    16981 ttttaatgac tgatctcgtt tctaataaac cttctctata tccttggtta tggtttaagt
    17041 aacccattca tgacactcct ctataattgt ttttaatatg caagctggta taaaacctca
    17101 gctaaaactt cgattccttt aatcaaatct tctgtttttg tttcttctgc agtgttatgt
    17161 gatataccat caatagacgg tacaaaaatc atgccagtcg gtacatattt agcaaaaatt
    17221 tgtgaatcgt gaccagcacc tgatggcatg actttataat taccatcagc tagcttttct
    17281 gccgcattga gtaccttctc aataatcttg tcgttcatta gtgttggtgc ttcatccatc
    17341 cacaagttaa tatcgacttc catttgattt cgttctgcaa cacttcgaat tgttttctca
    17401 atttcatcag caaatgtgtt taatactttt tgatcaacat gacgtgtatc tactgaaaat
    17461 tccacttctc caggaacaac attaactgta tttggcgtcg gtgtgacatg tccaaatgtt
    17521 aaaacgagtg gatccccaat ttcttctgca cgtgctgtaa gtgtttgaac aatttcacta
    17581 aatgcaacaa cagcatctcg acgtaagccc atcggtgttg tacctgcatg attagcctca
    17641 cctttcaaac gaattgtgta tcgtttttga cctacaatgc cattaacaac gccgatttgt
    17701 ttcccctcga cttcaagtac ttttccttgt tcaatatgaa tttctacaaa agctttaatg
    17761 tcatcacgta ctttattatc tttacggaaa tcaaatcccg cttcatgcat tgcatctaca
    17821 aaacgaacgc cttctgcatc tgcaatattt tcaacatctt ttttatctgc taaattaaag
    17881 aagtttttac ttccccagaa tgtaaatggg aaacgacttc cttcttcttc agctaatgac
    17941 aacacttcaa ttgaacgttt tggctgacca tatttttctt tcaaatactt tgttgcgatt
    18001 aacgctgcta aaataccaaa ttgaccgtcc aaatgtccgc cttcaacgac agtatcaatg
    18061 tgcgaacctg acaatactgt ctcttcagga tgcgtcgtac ctaccaaacg acctgaaatg
    18121 tttccaacag catctttttg aacttcaaaa ccttcttgtt cgaaaatttg tatcaattga
    18181 tcaactgctg ctttccattc ttttgaatat aaaagacgcg taataccacc ttgttcaaga
    18241 cctccaaaag aagtaaaaag ttgatccatt ttttcaaact cgctaagtat gttcattgta
    18301 cgtcctcctt actcatctat atgttccatt ataaaaagat taaggcgact cttcattgac
    18361 gtaacagaca atatctcacc tatattttat gcacttcata caaatacaag cggcatttgg
    18421 tgagttacta tatatttagg agacttttac ttaaaaagga gcatcacaca tgactgaaaa
    18481 atctataatt gagacatttg gttcaacttt taaacataca ggtcgttggt atcccacaac
    18541 aaatgccgac gctcctcttg gtacacttct ttatattcac ggtggtggtc tcgtgtttgg
    18601 aaaaatggac gatttaccag aagcttatat gaacatttta agacgttcat tcaatgtatt
    18661 tactgtgcct tatcgtttta ttcctgaagc aaaactcaca gatattgttg aggatgttac
    18721 agcagcttat gatcacatag ccaaacaaca agatagcccc atttacgtaa tgggtcgttc
    18781 atctggagct tatctcgctt ccctactcgc aacacttcgg ccagtacaag gactcatttt
    18841 attttatggt tattatgatt ttaaacatgc tgcatttcat cgtttaccga cggaccaaca
    18901 acatattgct tcaatgctta acgataaact agaaattgaa ttgactcagg atgaacctat
    18961 ctctaatgaa gaaacaccta ttcgttactt actctacctt tattacagac atcgcgacat
    19021 ttggctgact cgaatgggta aacatattga tttatatgaa cttcaacatt cggaccttaa
    19081 gacactgcca ccgacgtttc ttgcacactg tacattcgat ccagatgtcc cttttgaata
    19141 cagccaaaca atggcccatc atattccaca acatcattta gaggccattc cgaagcacgc
    19201 tcatgatttt gatcgtcaag tgactgaaga caatattaat ctttatcaaa aagctactaa
    19261 ttttttatgg caacaacaat cacaataaag gagtgttgag atgaaattaa ctcgtgtatt
    19321 aaaaacgctt aatagcttta acaatttagg tttgagcacc tctttaaaag gtattaatcg
    19381 acttgcattt acgcacaacg aacgtttagc ggctcttaaa ttttctatgt attgccaaga
    19441 agaaggattg aaggtgcatt ttgacggaat cggcaatgtc atcgcaagac gtgagggacg
    19501 atatccagac ttgccaccag ttcttatcgg ctcacatatc gataccgttc cagaaggtgg
    19561 acgttacgac ggattactag gtgttgtagg ggcattagaa tttgtacgtt acttaaatga
    19621 tcaacaaatc gagaccgatc accccattga aattgtggca tttacttgcg aagaatctgc
    19681 acgctttaat gtagcaacac ttgggagtcg ttattattgt ggaaatctct caaaagaaga
    19741 tatggaaaat ctatctgatc aagatggaaa gactttatat gaagtgatac aagaaactgt
    19801 gacaacgaaa gcagcggatc tctcatcaat accacagcca aaagcttata ttgaacttca
    19861 cattgaacaa ggccctgttc ttgaaaaaac agcaactgat attggcatag tcacacatat
    19921 tgcagcacct caaagattta aactgacact tcaaggcgta accagtcatt cgggggcaac
    19981 acctatgatg atgcgacaag atgcacttac ttgcgcttct gaaatcatta cacatatcga
    20041 agcaattgga caacgctacc aagaaagcgg actagttgca actgtaggac atatcgacat
    20101 tcgccctaat acgatgaacg ctatccccgg tgaagcaacc ttgtttattg atttacgcag
    20161 tattgatacg acagcacgtg atgaagtagc tactgctatt gagaaagcaa ttgtaactac
    20221 gacacgaaaa cgagatatca cttacacttt aactacatta accaaggaga caccaacgaa
    20281 tctatcacaa cctatcggcc aaataattga gtctatttgt caaacaaatg agatatcata
    20341 tcaatactta tttagtggcg ctggacatga tgctatgcaa ttagcgaaat gttgtcctac
    20401 aagtatgatt tttattcctt gtgaaaaagg cattagtcat tcacctgacg agagtgtgac
    20461 agacgatcag atacgaatag gtgttgacgt actcatacaa acagcccttc agttaagcta
    20521 taaaacaacg caattgagtt cttaacaaaa gcgcggtgag cacatccaat tgaaacttct
    20581 taacatttga cgtttcaaca gataactcac cgcgcattat ttgcttttta caacttaatt
    20641 atgaaatgaa tgcaccatgt ttttcatcac tcaaacctgt gtcgatgtca taaatcacat
    20701 gaccttttaa gattgttttc acaacacgtg caccaatttc gcgaccgata taagggctaa
    20761 tttgatgtct atatgccaag tcttcagctt gtaatgtgta agatgtatta ggtgctatga
    20821 atacaaagtc tgcatctttt ccaacttgaa ttgtaccttt atttgttaag ccaaagcgtt
    20881 ttgctggatt gtgtgcaata atttctgcaa aacgttgcaa tgacatttga cgtttattga
    20941 caccttcatc aaagagcaca tccacattgt tttgtacgcc tgcgattccg ccccatgctt
    21001 caaatgcgtt gtctttatct ttaagatcag gtgtacatgg agaatggtca gatgttacaa
    21061 atgagatatc gccgtttagc acacgttgcc acataccttc taaacgtgat ttttcacgaa
    21121 ttggcggtga acatttcaca actggtccaa tctgatctaa ttcttctttg taaaaataaa
    21181 ggtaatgtgt acatgtttca caagtgatgt ctacaccttc tgcctgtgct tttttcactt
    21241 cttctacacc ttcttcacaa gcaacatgca caatgtgtac gcgacagcct gtttctttgg
    21301 caaataaaat aattttacga attggctcaa cttctgtaaa tacaggacgt gagtcgacat
    21361 aagctgccaa agttgtttca ccattttcat aagcttgttg acctaaagca tcagtaatcg
    21421 cagcattttc agcatgaata gataaaattt tacccgtttt agcgatttgc ttcatacctt
    21481 catatagtga atagtcatcc acattcataa agtcaccatc aattgaacga tcgccacatg
    21541 ttgctacaaa gcatttataa gcgacaacac cgtcttgatc taactcttga attccaccat
    21601 ttaaattaaa cggtactaaa ccaccataac ttgcaacatc aacagacaac ttaccttttc
    21661 cagcctcaaa tttagcttga atagattcgt gatctactgt cgcagggact tggttgagtg
    21721 gcatttcaac aatagttgtc acgccacctt tggcagatgc acgtgtgcct gtttcataac
    21781 cttcccattc gtcacgatag ccaccacctg gctctgtaat gtgaacatgc gcatctacca
    21841 tacctggtga tacgatatga ccttgagcat cgataattgt atcagcatct cccaattcct
    21901 gaccaatcgc cgcaatcaca ccgtctttaa caccaatttc tacattcgct tctccatctt
    21961 gtaaaataac acgaccattt ttaataattg aatcaaattt catcataatc accttttctt
    22021 cttaacattt gattaagtgc aagataacaa agacctgcaa taaagaaacc tataaaccat
    22081 gataattgcc cgataatccc aagctgtggt atgaatccca aagatgacac aatcacaccg
    22141 ataatcgttg caacataagc gctcatatta aaacgttgaa cactttttga aacatcattc
    22201 atatcaaaat acaatttctc taagttaatt ttctgcttag cgacaacata gaaatggaaa
    22261 accataaccc ctgcgactgg acctaaaata gcaccaatca tatttaagaa gagaaaaata
    22321 ctatcattat tctccatcat cttccacggc ataattaata tactgacaat tcctgcaatc
    22381 acaacgcctt ttcggtatga aattttctta gggaaaagtg cactaatttg atagccagct
    22441 ggaataatat tacttgtcgc attggtagaa atcgttgtca tcaataaaat tcctacagca
    22501 aatacaattg caatgttact atcccatcgt tcaataatgt ttaaaatatt ccattcttgt
    22561 ttgccataaa aaatcgaacc accgataaga atacaaatac ttgaaaacgc gaataacaca
    22621 tgtgccacaa cgacacccga aatttggcca ataatttgtg cttttgttga ttttgcacgt
    22681 tgggtaaagt ctgcaacact cgcaccaggt gctgcccata cagcaagtaa tgagttaaat
    22741 acgataaaaa atcctaacaa taccggataa gctgtactac cgtttgttga caactcataa
    22801 tttaaaatgt tggaaaatcc gccacctgct ttgattcccc aaatcgtcat tccaccaaaa
    22861 atgatataaa tgagtggatt taacactgct gtgaatttgt tgagaatttt tccgccacca
    22921 aatccaatcg caaaattaat taaccaaaag agcatgaatg cgataaatcc tgatacagta
    22981 atacctaaaa atttatgtcc accgccaatg tcagaaaaac caggaaaaat cttgtttaat
    23041 acgataatca atgcaacaga acctgcaaaa gtctgtaaac caaaccacgc tatccctgca
    23101 ataacaccac gtaaaatacc aggtaatttt gcaccgatgt caccatatgt taaccgcaag
    23161 tgaatcgcaa atggaattcc atatttggaa cctgcatacc cattcaccgc aagtaaaatc
    23221 ccaattaaaa gcgaactaat aacgagtgca aacatgactt gtaacggcga aagaccaagt
    23281 attaaaaaac cacctacagc tgtatagttc ggaatattat gcacagcacc catccacaat
    23341 gtgaaaaagt taaaggctga agtatctctt tgctcggggc ctttgggcat aatatcttta
    23401 ttgtaaccac gttgctcata gaatgttggg tcatactgat gcaaagccat gatgatcccc
    23461 cttttatgaa gttttcaaga ttgtatacaa atctttcaaa aattagtgta ctattgaagc
    23521 aatgaatatt ctttgtcact tttgacataa acaaatattt ttttagttat tttatacaaa
    23581 ggtggtgtct caatggcaac tttagaggac attttacagg tggaacaatt ttcggggtta
    23641 tccgttttga atgataaggc tgatttaaat cgtattgtag aaagtgtaga tattactgaa
    23701 acgcctgacg tcatgaacta tacaacagca aatgcgttac tcttaacaac agggatgatt
    23761 ttccaaaaca atcaacgtgc gctcattgac tttatccgtg aacttcataa cgttcctata
    23821 gcagggctcg caataaaatt gtctcgcttt ttacaaaaat tagatcaaga ggtcattgac
    23881 tttgcaaatg aattaaattt cccattgatt gagattcctt cacattggaa actcggaccg
    23941 ctcacgcatc acatttcatc ttttattctt gatgaagaga cagaaaagct atactatgct
    24001 ttagatattc aacaaaaaat gaatcgtatg cttatcaacg agtaccctgt ttctaccatg
    24061 attcatcaaa tggcaaaaat gttaaaagtt cctgttctgt tgattaatcc gtttcattta
    24121 gttgaatcaa aaggtggaca ttttgagaat gatcagaaag ccacacagca agcactaaaa
    24181 ttctttcata atacttatct tgagcaaaaa ttagagaatg agcatgactt ccaacgtgat
    24241 tatgtcgttt tagaagttcc tgcttttaaa tattttccat actatttact aatcgcaaaa
    24301 gcttatacgt tgagctaccc ttttagccat ttagctttgg aacaagcaat caatacactt
    24361 agttttgcta tttataaaaa cagtaaaatt cgagcaacag agcaacatga aagtagccaa
    24421 tttttcactt ctttaatgta cagtaaagat cctgcaccta ttgatatgag aatgaaccca
    24481 gaatttttca aacgttataa tttaaagcat tctaattatt atcaagtcat tatttgtggc
    24541 gtcgacaaag aagaaggtat cgaaaatagt atttatttat cggagcgtca tcaactcact
    24601 tttgattggc tttacagtat gatgacagat ttagataacg atattagtgt ctttggtctc
    24661 aatgatcaaa ataaatacgc cattttatta caaaaaaggc acacatacta tttagactat
    24721 tgtcgttttt tacaaaagga ataccaaaag cacttcaaca gtacgatttc attcggtatt
    24781 ggtcatgaag taacagactt caaacagatc cccatgtctt ttgtagaagc caatgatatc
    24841 tatgatacgt acgttgaaaa agaagaaaaa gagtttttaa atacttacaa atcgaaaaat
    24901 gttgaggaac tactccaatt agtgccaact gataaattac gaccatttgt cacgtatact
    24961 ttaggtccct tagcttatcc agataaccct aaagatcaag aactgaaaaa aacattaaag
    25021 acatttgtag aacaccaatg tgatattaca cagactgcta atattatgtt tatccatcga
    25081 aatacagtta aatatcgcat caaaaaatgt gaagaattgc tgaatatgga catcacgcat
    25141 cctaaaaatt cattagatat tcggattgca at
//
LOCUS       DANHOL010000020        24526 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.020, whole genome shotgun sequence.
ACCESSION   DANHOL010000020 DANHOL010000000
VERSION     DANHOL010000020.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 24526)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24526)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24526
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.020"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(<1..145)
                     /locus_tag="PTC08_000571"
     CDS             complement(<1..145)
                     /locus_tag="PTC08_000571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DivIVA domain-containing protein"
                     /protein_id="HDK5682101.1"
                     /translation="MSDVSLKLSAKDIYEKDFEKTMVRGYRPQEVDAFLDDIIADYQK
                     MSDL"
     gene            complement(165..722)
                     /locus_tag="PTC08_000572"
     CDS             complement(165..722)
                     /locus_tag="PTC08_000572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1273 domain-containing protein"
                     /protein_id="HDK5682102.1"
                     /translation="MFKTMYLTGYKSYELQIFNEHAPEVTYLKKFITQKLIQYIEQGL
                     EWVLIQGQLGIELWSAECVIALKEDYPELKLGVITPFLEHTSKWNEQNQLKYQQIIEK
                     SDYVNSVHQHTYEGPFQFEQADQFMLDHTDITVLIYDEEQPASPQFFKKKLVDFVEKT
                     NYTCDIVTFDEMTNFINDLQWSEEI"
     gene            complement(715..1056)
                     /locus_tag="PTC08_000573"
     CDS             complement(715..1056)
                     /locus_tag="PTC08_000573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1798 family protein"
                     /protein_id="HDK5682103.1"
                     /translation="MQIVIQQLIHDLATISQRFKVARAGRQYDFYKEVQPFVQQVDAH
                     LQSLQHYQDTISKQKYFNAQKLQRMSSLMSEITVACHQSRTSKKLFLDQFKAVQHDLN
                     YLSQMERDGHV"
     gene            1252..1878
                     /gene="recU"
                     /locus_tag="PTC08_000574"
     CDS             1252..1878
                     /gene="recU"
                     /locus_tag="PTC08_000574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RecU"
                     /protein_id="HDK5682104.1"
                     /translation="MNYPNGKPFKQSQTQDGSTRTNKSSKIKYGGRGMTLENDIESSN
                     QYYLKTERAVIHKKPTPVQIVHVDYPKRSQAVIKEAYFRTPSTTDYNGVYKGYYIDFE
                     AKETKNKTSFPLQNIHAHQVEHMKQAVAHGGIVFLLLRFKGINEVYLLPFKRFFPFWE
                     RYLKNGKKSIKVEEIQENGYYIPYQYQPRLDYLNAVDKLILDESEDRL"
     gene            1875..4097
                     /locus_tag="PTC08_000575"
     CDS             1875..4097
                     /locus_tag="PTC08_000575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein"
                     /protein_id="HDK5682105.1"
                     /translation="MTEKKGTSKQTKKKSGQKKNKNIKRTIIKVLSFLVLAFVILALL
                     SVLLFAYYAWKAPAFNESKLQDPSPAKIYDKDDELVKTLDNGARREHVDLKDVPDTMK
                     NAVLATEDNRFYDHGALDYKRLFGAVLKNITGGFGSQGASTLTQQVVKRTFLTDQKSI
                     ERKAQEAYLSYRLEQEYSKDEIFQMYLNKIYYSDGVYGVKAAARYYFDKDLKDLNLAE
                     SAYLAGLPQVPNTYNIYDHPEEAEKRKDTVLYLMAYHHRISEKEKKEAQDTPITENLV
                     QRSAEDRQIKPDDDSEQYNSYVNFVKQELMNNPEFKGQNLSDILNSGIKIYTYMDKDA
                     QNSLQNRIDNGGYYKNEDQMVGSTIVDSQTGALVAISGGRNYKDVVERNQATDAHPTG
                     STLKPFLAYGPAIDNMQWATNHSIQDESAYNIDGATFRNYDQQSHGTVSIYDALRQSF
                     NIPALKTWQQVKSQAGNNAPTDFAKKVGLEYENTDIGPSEVLGGSSSEFSPTQLASAY
                     ASFANGGTYNKAHSIKKVVEANGNTIEFDFTSHKAMNDYTAYMITEILKGTFEAYGSA
                     YGNKVDGVNMAAKTGTGTYGAETYQQYNLPDSAAKDVWISGFTPKYTMSVWMGFSEVK
                     QYGQNSFVGSSEQKYPQLLFRDVMSDISPRDGSDFTRPDSVAGSGKSLYVAKSPDGNT
                     TSNFTESSNGTNSGSSSNNSRNGNNGQNWSNGNNNSQQSNNNNSNNNGNGIFGNLFGR
                     "
     gene            complement(4779..5114)
                     /locus_tag="PTC08_000576"
     CDS             complement(4779..5114)
                     /locus_tag="PTC08_000576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682106.1"
                     /translation="MNHQEIIANMSKLEGALDEYAKQRKIGHDASVTLLDEYYNLLIR
                     YFNVINEVENYRLVTQESLRIVPFNIDERFAYIETRKHHYMGYQQMKTLKSELVKMYA
                     AYRARHRLL"
     gene            complement(5111..5785)
                     /gene="nth"
                     /locus_tag="PTC08_000577"
     CDS             complement(5111..5785)
                     /gene="nth"
                     /locus_tag="PTC08_000577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HDK5682107.1"
                     /translation="MISKKKALEMIDVIDQMFPDAQCELVHENPFELTIAVLLSAQCT
                     DNTVNRVTKDLFQKYHTPEDYLAVDLEELQQDIRSIGLYRNKAKNIQKLSQSLLDQYD
                     GIVPHTHEQLEGLAGVGRKTANVVMSVAFGEPALAVDTHVERVSKRLGICRWKDSVTE
                     VERRLTSIIPRERWTKSHHQLIFFGRYHCLAKKPKCGVCPLFEDCREGQKRYRASLKK
                     AAGASS"
     gene            complement(5775..6467)
                     /locus_tag="PTC08_000578"
     CDS             complement(5775..6467)
                     /locus_tag="PTC08_000578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002497888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaD domain-containing protein"
                     /protein_id="HDK5682108.1"
                     /translation="MNQRELQIRPVVIRFELLEHYQELGLNENDLVILIKILYAYESS
                     NEQPSIDVLKKGTTMQSSEVTAIIQKLIQLGLLAMRVEKNNEGKFTEYINLDGFYEQL
                     ASIFKQIETSKETTSEEEAFKMVFKKIETAFGRALSPLEIEHLNQWIDVDHYAIELID
                     AAIDEALAHQKTSLKYIDRILLNWQKNNVSTVKDAQPIRAKFKKQPQQPTQKTEHIPK
                     FNWLKGENPFDK"
     gene            complement(6642..7934)
                     /gene="asnS"
                     /locus_tag="PTC08_000579"
     CDS             complement(6642..7934)
                     /gene="asnS"
                     /locus_tag="PTC08_000579"
                     /EC_number="6.1.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine--tRNA ligase"
                     /protein_id="HDK5682109.1"
                     /translation="MKTTIKEAKNKIGQEVTIGAWLANKRSSGKIAFLQLRDGTGFMQ
                     GVVVKADVDEDIFQRAKSLTQETSLYVTGEITEDNRSDLGYEMQVKNIEVIHEAHDYP
                     ITPKNHGTEFLMDHRHLWLRSKKQHAVMKIRNEIIRATYEFFNENGFTKIDPPILTAS
                     APEGTSELFHTKYFDEDAFLSQSGQLYMEAAAMAYGKVFSFGPTFRAEKSKTRRHLIE
                     FWMIEPEMAFTTHEESLEVQEAYVSYVVQSVLKNCQIELKLLERDTSKLEKVQAPFPR
                     ISYDDAIKFLHEAGFDDIKWGDDFGAPHETAIANHYDLPVFIVNYPTKIKPFYMQPNP
                     ENEDTVLCADLIAPEGYGEIIGGSERINDLELLEQRIDEHQLDTESYQYYIDLRKYGS
                     VPHSGFGLGLERTVAWIAGVEHVRETSPFPRLLNRLYP"
     gene            complement(8002..10704)
                     /locus_tag="PTC08_000580"
     CDS             complement(8002..10704)
                     /locus_tag="PTC08_000580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease H-like domain-containing protein"
                     /protein_id="HDK5682110.1"
                     /translation="MAHQPCYAVVDLETTGNQADYDEIIQIGITFVRNNQIIDHYHSM
                     IKTDLTIPTFIQALTSIEEEMLNQAPYFKEVAHKIYSKIKDCIFVAHNVNFDLNFLKR
                     SFKKCHIHYQPKKVIDTLELFKIAFPTEKSYQLTELAESLGIPLTQAHRADEDAYTTA
                     RIMILAFEKFEVLPINTKKQLYYLSKQLKYQLDDYFFEQVRLHDATKEMTGLNQFEQI
                     YYLAPPDFEVSHIQFDGNLTALYQTIVDVCHYQYREEQLYMAQIVFDQLMHNEKALIE
                     ADTGSGKSLAYLVASLMYYIETGEHVMISTNTKMLQNQLLLQDIPKINEALNVSINAT
                     LIKSKQDYISLGLISQVLKDETTNYDVNLLKMQLLIWILETRTGDIQELNLRGGQKMY
                     FEQKIETYVPIRKDFHYYNHIRTNASKIQIGITNHAHLLYSSPEHTLYQMFKHCIIDE
                     AHRLPDYAIDCAIHAFGYADIKYQLGLIGKTENEKLLKQIDQLEQQRILQKLDIPPID
                     VFSIKQDINEIHDMNEHFFDHIFNQVHEGQLYDDETSKLHYAYDMKRDQLIPLLHQYI
                     SKINVTLEHFNNMKHKVVKTLRKHLLYIVDQLREIETGLKAGHLFYITLKNVQQKSTI
                     KIHLKDASIKHLLTEKILKQFESISFVSGTLTFNGSFKNYQKWFEEDVHFQTYKITSE
                     HQHNANAHIFVPNDIKRYNYQNQEEYIQTIVEYIARYVTTVDSKCLVLFTSYKMLYNV
                     MDYLNQMAEFDDYVILSQQQSQNYKIVQQFNHFDKAILLGTSTFFEGFDYQAHGIKCV
                     MIAKLPFMNHHAVKPMLLANEFDNVFKDYVLPEAVLRFRQGLGRLLRNENDQGIVVSF
                     DNRLIHSQYRHFFQNTFTHFQQHEGNIKQFGQLLHQMQSQLDQS"
     gene            complement(10732..11703)
                     /locus_tag="PTC08_000581"
     CDS             complement(10732..11703)
                     /locus_tag="PTC08_000581"
                     /EC_number="6.3.4.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin--[acetyl-CoA-carboxylase] ligase"
                     /protein_id="HDK5682111.1"
                     /translation="MSKYLDQILELLTDARPDYISGQTIAEQLNVSRMTVKKTVDQLK
                     AEGFSIDSIHNKGHQLKALPQAWHKGVLTSIFKHQSFINQFQTYPSVDSTQQVAKKAI
                     LNDDRTMLILSDEQTAGKGRFKRVWQSSKGKGLWMSLVLRPDIPFSMLTTFNLFMSLA
                     ISEAIQSYSPAKVEIKWPNDIYIEGQKVCGFLTEMVANADGIEAVICGIGINLNHDVE
                     DFDEALQQTATSVKLHYGKNINRYDFLEQLMQRIEVRYQQFLTEPFTTIKDEYIQRSN
                     IWNKQLRFTEGKQQFYGNVMEIDDQGFLLVVDRDGDFHRLMSADIEF"
     gene            complement(11687..12889)
                     /locus_tag="PTC08_000582"
     CDS             complement(11687..12889)
                     /locus_tag="PTC08_000582"
                     /EC_number="2.7.7.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CCA tRNA nucleotidyltransferase"
                     /protein_id="HDK5682112.1"
                     /translation="MNQSQFELAKPILERLIQHGYEAYFVGGSVRDFIMNRPIHDVDI
                     TTNATPDEIESLFEHTIPIGKEHGTINVVWSHENYEVTTFRAEAEYVDHRRPTEVYFV
                     RDLYQDVERRDFTMNAIAMNINYERIDHFEGERDIEQRIIRTVGDAKTRFDEDALRIL
                     RGLRFKSQLGFTIEEATFEAMAHQMSDLEYLSIERIMNELTLLIKGTFVAKTFPILEA
                     LQLWRYIPYFKDVDVAAIKINAPIDMEAFLAILSYRTNYQAFKSLKLSNAQVRTIQTL
                     ISAIQVAQTIDTKVQLQQFTYDFGLEVALKINELRPILEDNQIDLPSPIIFSSASLQA
                     VWEDLPIQSREDLAIDGKWLMQAFQLKGGPWIKDVLRQVECAVIQRQVNNQTEAIIEW
                     VRTHVKIS"
     gene            complement(12893..14017)
                     /gene="bshA"
                     /locus_tag="PTC08_000583"
     CDS             complement(12893..14017)
                     /gene="bshA"
                     /locus_tag="PTC08_000583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-alpha-D-glucosaminyl L-malate synthase
                     BshA"
                     /protein_id="HDK5682113.1"
                     /translation="MKIGITCYPSVGGSGIIATELGILMAERGHEVHFITSNMPFRLN
                     KPVPNITFHQVDVNQYAVFQYPPYDISLSTKIANVINEYDLDVLHMHYAIPHAICGIL
                     ARQMSGKDIKIMTTLHGTDITVLGYDHSLRNAIKFGIEQSDIVTSVSESLKDETNEII
                     APQKEIVPIYNFVRESEFPTGYNTDLKESYGITQDEKVLIHVSNFRKVKRIDTIIDTF
                     ALIREHIQSKLLLIGDGPELHDMRIKVREMGLSDDVLFLGKQDCMSNFYQMSDIVLLM
                     SEKESFGLTLLEAMKTGVVPIGTRAGGIQEVIQHRETGFLVDIGDSQTAADYALKLLT
                     DSALYQSLRENMLHDIAKRFDSQIIADQYEHYYKKMIGEL"
     gene            complement(14033..14356)
                     /locus_tag="PTC08_000584"
     CDS             complement(14033..14356)
                     /locus_tag="PTC08_000584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide pyrophosphohydrolase"
                     /protein_id="HDK5682114.1"
                     /translation="MNRSLSDMQKEVDTYISQFKTGYFSPLANLARLTEEVGELAREI
                     NHYHGEKKKKASEAENTIEAELGDNLFVLLCLANSLNIDMTKSFNQTMKKFNKRDKNR
                     FERKT"
     gene            complement(14535..15236)
                     /locus_tag="PTC08_000585"
     CDS             complement(14535..15236)
                     /locus_tag="PTC08_000585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000094841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc metallopeptidase"
                     /protein_id="HDK5682115.1"
                     /translation="MMSIMSLIIYFIILMILPMYAQHQVKSNYEKYAQVRSTSGKTGR
                     EVALEILHANGIYDVEVKEGQGFLTDHYDPKNKVVVLSPSNYNKPSVAGTAIAAHEVG
                     HAIQHYEGYFFLRFRSALVPVANIGSSMSYIFIMAGIIMTSLHMAIGSTALWIGIFLM
                     AFAVLFSIVTLPVEFDASKRAMNQIQKMHIVNEKEYKHAGRVLRAAAMTYVAATAVAV
                     AELVRLILIARSADQ"
     gene            complement(15272..15865)
                     /locus_tag="PTC08_000586"
     CDS             complement(15272..15865)
                     /locus_tag="PTC08_000586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1405 domain-containing protein"
                     /protein_id="HDK5682116.1"
                     /translation="MWTALQNMLFYQRPILILIIMSNILGTLYGYIWYTPQLYRSAWY
                     FWPFIPDSPTATLFLVVSLILLLCKKQSAIIDTLAFVTLLKYGVWAVMMNFLLFIEDD
                     TIYVMGVLLIISHGIMAIQAVLFLPQFKFTLTSIAITIFWVFHNDVIDYVFHQYPVYG
                     GLGHYEAQIGYLAFWLSVVPILFVIYRLSRGKKIDQV"
     gene            complement(15894..16451)
                     /locus_tag="PTC08_000587"
     CDS             complement(15894..16451)
                     /locus_tag="PTC08_000587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YpiB family protein"
                     /protein_id="HDK5682117.1"
                     /translation="MLDTRLNFEKRDFIEYLLFHYQFKSRISVWLLNFIKTNHALIEK
                     IHFVDQIVADHPTLEMAVSDAPVIAIQYHEGETLLMNTDEIFHQVIRHSQQLDVKIHF
                     NHEANRDLRLDHLLLQQLLATQNGDAYHKDMYHIEFSNSTEQQIIHLLKSHIDLSLNL
                     KDIQLFKHYTKILNLIKLRHITDKT"
     gene            complement(16463..17704)
                     /locus_tag="PTC08_000588"
     CDS             complement(16463..17704)
                     /locus_tag="PTC08_000588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682118.1"
                     /translation="MQDIYKLIDDINLQKLDQLDSRVQEALQSDNDDALFVLGETLYQ
                     FGLTPQGLEVFRTLYMKYPDEDEILIYFIDGLISENQTDEALEFLNEVPLTPERLMLE
                     ADLYQQINMIDIAIEKIEQAIEIQPADPIVHFALAELLYYDGQYLRASREYDTVLESG
                     EYEINGVNLFSRIADSSLQSGNYTDALRWFDEINDNELTSDDYLKKAIAYEKNDMTHE
                     AIKLVKTLLQKDPDFIQGYYYLQQLYENEKTFGDAIEIGQEGLRLNQFYKELMYSTGA
                     LQIEHGDQNEGVTLLKQALEVDPGYQEPLLMLADFLRNKEDYEALIELVQYVDEEDMD
                     PQFMWQLAYALGQEERDKEAQHFYGLAFASMRDNIDFLKDYYYYLIEIGQIEPAKSIL
                     QLLLQKDSGNPEWDAEQGRLL"
     gene            complement(17706..18995)
                     /gene="aroA"
                     /locus_tag="PTC08_000589"
     CDS             complement(17706..18995)
                     /gene="aroA"
                     /locus_tag="PTC08_000589"
                     /EC_number="2.5.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoshikimate 1-carboxyvinyltransferase"
                     /protein_id="HDK5682119.1"
                     /translation="MKKIMINGPLIGEASVPGDKSMTHRAIMLASLAQGHSVIHQPLL
                     GEDCLRTAKIFEKLGVKMDITDEAITIDSPGYAHFQTPHQTLYTGNSGTTTRLMAGLL
                     GGLGIQSVLSGDASIGKRPMDRVLQPLRQMNVNISGVEDNYTPLIIGSSEVKGIHYEM
                     PVASAQVKSAILFASLFAQNTTTIREIDLSRNHTETMFAHYGIPVQTQDLTVTLPGEG
                     IHHIQPRDFDVPGDISSAVFLIVAALITPGSDITLHNVGINPTRDGIIEIVERMGGKI
                     SLSNQTNGPEPTATIRVQYTDDLKGIEIGGSLIPRCIDELPTIALLCTQAHGSSIIKD
                     AEELKVKETNRIDTTANELGKLGLKLEPTDDGLIIKPSTISQIQPVDSHNDHRIGMML
                     AVASLMTPEPIEIAQFESVNVSFPGFLPLLKQLENEG"
     gene            complement(18996..20069)
                     /locus_tag="PTC08_000590"
     CDS             complement(18996..20069)
                     /locus_tag="PTC08_000590"
                     /EC_number="4.2.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase"
                     /protein_id="HDK5682120.1"
                     /translation="MQLTTTYPDHNYPIIIEHAAFNQLDALVSDYQHVFVFVDQNVYT
                     AWEQKISRFVHHHSYTTFQIPSGEQVKYMAQYERYIEALLAHQPTRNTCLIAIGGGAT
                     GDFVGFLASTLLRGVDFIQVPTTILAHDSSIGGKVGINTTHGKNLVGAFHRPKAVIYD
                     LEFLTSLPYSEILSGYGEVYKHALLNNAQSVQILENAYPDSMHLKTLQAIEQYLINGI
                     QTKLQIVLNDEKERGQRQFLNLGHTFGHAIEYQYQLAHGHAVMIGIVYQFIVSNLLLG
                     THFDVPHYLKYLNHLGYPLDIIRQFEFEPLLKLMRNDKKNDAKGVRMVLLQAIGDPIV
                     KHVEIPILEKALETFKQQYLEVI"
     gene            complement(20086..21252)
                     /gene="aroC"
                     /locus_tag="PTC08_000591"
     CDS             complement(20086..21252)
                     /gene="aroC"
                     /locus_tag="PTC08_000591"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HDK5682121.1"
                     /translation="MRFLTSGESHGPQLTVIIEGLPANMTIDIDQINEEMFKRQGGYG
                     RGRRMQIEKDTVEIVSGVRHGYTLGSPVTIVIKNDDFTHWRNIMGAAPISEEEKENMK
                     RVITKPRPGHADLVGGMKYNHRDLRNVLERSSARETAARVAVGALCKQLLKQLGIDVY
                     SRVIEIGGIKDEGIYNIDTIIENIDKNDVRVIDDSIAQAIRDKIDSAKKEGDSIGGVV
                     QVIVNHMPVGIGSYVHYDRKLDGRIAQSVVGINAFKGVSFGEGFKAAEKLGSEIQDPI
                     LYSEEQGYYRASNHLGGLEGGMSNGMPIIVNGVMKPIPTLYKPLASVDIDSKEPFKAT
                     IERSDSCAVPAASIVCEHAVSYEIARSVLEEFGSQDFSRLAQQVAERRALNQTF"
     gene            complement(21531..21983)
                     /gene="ndk"
                     /locus_tag="PTC08_000592"
     CDS             complement(21531..21983)
                     /gene="ndk"
                     /locus_tag="PTC08_000592"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HDK5682122.1"
                     /translation="MEKSFVMIKPDAVQRKLIGEIVQRIEQKGLKLVGAKLMTVPQSL
                     AETHYGEHKGKPFYDSLISFITSAPVFAMVVEGENAVAVARHIIGSTNPSEATPGSIR
                     GDLGLTVGRNVIHGSDSVESAEREIGLWFKDEEISSYHTPDETWLYEA"
     gene            complement(22065..23021)
                     /locus_tag="PTC08_000593"
     CDS             complement(22065..23021)
                     /locus_tag="PTC08_000593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HDK5682123.1"
                     /translation="MSKLNLNQEIKKIENTLKQLIQSEDSTLQSAADHLLSSGGKRVR
                     PLFVILSSYVGENPANDAAYRVATALELIHMATLVHDDVIDFSDKRRGKLTIEKKWDQ
                     PTAILTGNFLLARALEHLSYIQDSRIHQTLSHAIIEVCRGELFQFQDQFRAEQSITNY
                     LRRINRKTALLMQLATEVGAMSSHTDDPTIRKMRDIGHHIGMSFQIVDDVLDFTSTEK
                     KLGKPVGSDLRNGHMTLPVLLAMKQNPQLKEKVATLTPGSPTEDFDWCIEQIRQSEAI
                     SQSLNVSQKYLDKASTLLETLPKNEIKPHFRKLIKRLQSRMN"
     gene            complement(23039..23752)
                     /locus_tag="PTC08_000594"
     CDS             complement(23039..23752)
                     /locus_tag="PTC08_000594"
                     /EC_number="2.1.1.163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011275738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="demethylmenaquinone methyltransferase"
                     /protein_id="HDK5682124.1"
                     /translation="MTKNKANKAQVHEVFQNISGKYDRLNNIISFEQHKVWRKKVMKE
                     MNVQAGTIALDVCCGTADWTIALSQAVGPEGEVTGIDFSENMLKVGEEKTAHMDNIRL
                     VQGDAMALPFDDNTFDYVTIGFGLRNIPDYSKALSEMYRVLKPGGMVVCLETSQPTMP
                     VFKQGYRLYFKFVMPIFGKIFAKSKQEYEWLQQSAFDFPDRETLKKMFEGVNFENVKV
                     RSFTGGVAAMHLAYKPKTN"
     gene            complement(23762..24331)
                     /locus_tag="PTC08_000595"
     CDS             complement(23762..24331)
                     /locus_tag="PTC08_000595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heptaprenyl diphosphate synthase component 1"
                     /protein_id="HDK5682125.1"
                     /translation="MENTFECLQQQLDKRLNQLNRPQNIHINRTLSQLLDQLDVPLNA
                     KLACLSIDTSMKHLDRISYYHYERDAILIGDLLSAHYYQLLADLKDVELQLQMSQAIV
                     KINELKSYIQHQKDIRTDVNLKDMMITIETLLIQVLMKHYRIQQSFDDIRHQLIQQLD
                     VQQLSYLIDWQTDEINDIIIALQNYTKSK"
BASE COUNT         7376 a         4700 c         4354 g         8096 t
ORIGIN      
        1 ttaagtctga cattttttga taatccgcaa taatatcgtc taaaaaagca tccacttctt
       61 ggggacgata gccacgaacc attgtctttt caaagtcttt ttcgtaaata tcttttgctg
      121 ataattttaa cgaaacatct gacatttgtt ccacctcatt tgatttaaat ttcttcggac
      181 cattgtaaat cattgataaa gttcgtcatt tcgtcaaacg tcacaatatc acaagtatag
      241 tttgtttttt caacaaaatc aactaacttc tttttgaaaa attgtgggct tgcgggttgt
      301 tcttcatcat agattagtac agtgatatcc gtatggtcca acataaattg atccgcttgt
      361 tcaaactgaa acggtccttc gtatgtatgc tgatgcacac tgttgacata atcactcttt
      421 tcgattatct gttgatattt gagctgattt tgctcattcc atttagatgt gtgttctaaa
      481 aatggtgtaa tgacgcctaa ttttagctcg ggataatctt ctttcaacgc aatgacacac
      541 tcggcactcc ataattcaat acccaattgc ccttggatta acacccattc taaaccctgc
      601 tctatatatt gaattaattt ttgagttata aattttttta aataggtcac ttcaggtgca
      661 tgttcattga atatttgcag ttcataagac ttgtaacctg tcaaatacat tgtcttaaac
      721 atgtccgtca cgctccattt gtgataagta gttcagatcg tgttgtacgg ctttaaattg
      781 atctaaaaat aattttttgc tcgttctgga ttgatggcat gcgactgtga tctctgacat
      841 taaagatgac atacgttgca atttttgtgc attgaaatac ttttgttttg aaatggtgtc
      901 ttgatagtgc tgtaatgatt gcaagtgagc atcaacttgt tggacgaacg gttgaacttc
      961 tttataaaaa tcatattgtc ttcctgctcg agctacttta aaacgttgtg aaatagttgc
     1021 taaatcgtga atcaactgtt gtatgacaat ttgcataaat ctaaacacct ttcattaaac
     1081 taaattaatt ttatcataat gtgttgaaat attttaacag gaattgattt taggtcacgt
     1141 taaacgacta tgtatgttac aataatgtca gtttatgaat cctttcgatt tataaaacgc
     1201 ctatcctatc atgtttatag ggcaaaaaaa catggattgt aggtgagaca aatgaattat
     1261 ccaaacggta agccatttaa gcagagtcag actcaagacg gaagtacgag gacaaacaaa
     1321 tcgagtaaaa ttaaatacgg tgggcgcggt atgacattag aaaatgatat tgaaagctcc
     1381 aaccaatatt atttgaagac agaacgcgct gtgattcata agaaaccaac acctgtgcaa
     1441 attgtccatg tggattatcc aaaacgcagt caagctgtaa ttaaagaggc ttattttcga
     1501 acgccttcaa ctactgatta taatggtgtt tataagggct attacattga ttttgaggca
     1561 aaggaaacga aaaacaaaac atcttttccg ttacaaaata tccatgcgca tcaagttgaa
     1621 catatgaagc aagcagtggc ccatggaggg attgtctttt tgctactccg ctttaaagga
     1681 atcaatgaag tttatctctt gccgtttaag cgattttttc cgttttggga gcgctactta
     1741 aaaaatggaa aaaaatcaat taaggttgaa gaaattcaag aaaatggtta ctatattcct
     1801 tatcagtatc aacccagatt agattacctc aatgcagttg ataagttgat attagatgaa
     1861 agtgaggacc gcttatgacg gaaaagaaag ggacttctaa gcaaacgaaa aagaagtccg
     1921 gtcaaaaaaa gaataagaac atcaagcgta cgatcattaa agtgttgagc tttttagtat
     1981 tagcatttgt catcttagca ctcttatctg tattgctttt cgcatattat gcttggaaag
     2041 cacctgcatt taacgagtct aaactccagg atccaagtcc agcaaaaatt tatgataaag
     2101 atgatgaatt agtgaagacg cttgataatg gtgcaagacg agagcatgtg gatttaaaag
     2161 atgttcccga tacgatgaaa aatgcagtgc ttgcaactga agataaccgt ttttatgatc
     2221 acggtgcact cgattacaaa cgtttgttcg gtgccgtatt gaaaaatatt acgggcggct
     2281 ttggttcaca aggtgcttcg acgttaacac aacaagtggt taaacgtacg tttttaacag
     2341 accaaaagtc gattgaacgt aaagcgcaag aagcctacct atcttatcgt ttagaacagg
     2401 aatattctaa agatgaaatt ttccaaatgt atctcaacaa aatttactac tctgatggtg
     2461 tgtatggggt taaggctgca gcaagatact actttgataa agatttaaaa gatctgaact
     2521 tagctgaatc agcgtatctc gcaggtctgc cgcaagttcc taatacttat aacatttatg
     2581 accatccaga agaagctgaa aaacgtaaag acacagtatt gtacttgatg gcatatcatc
     2641 accgcatttc tgaaaaagag aaaaaagaag cgcaagatac gccaattact gaaaatctcg
     2701 tgcaacgttc agctgaagat agacaaatta aaccagacga tgattcagaa caatacaatt
     2761 cttatgtgaa ctttgtgaag caagagctta tgaacaatcc tgaatttaaa ggacagaatt
     2821 tatctgacat tcttaacagt ggtattaaaa tttacactta catggataaa gacgctcaaa
     2881 acagcttaca aaaccgtatt gataatggtg gttattataa aaatgaagat cagatggtgg
     2941 gttcaacaat cgtggacagc caaactggtg ctttagtagc catttcaggt ggtcgtaact
     3001 ataaagatgt cgttgagcgt aaccaagcga ctgacgcaca tccaactggt tcgacattga
     3061 agccattctt agcgtatggt ccagcaattg acaatatgca atgggcaacc aaccactcta
     3121 ttcaagacga atcagcttac aatattgatg gtgccacatt tagaaactat gaccaacaaa
     3181 gtcacggtac ggtatccatt tatgatgcat tacgtcaaag ttttaacatt ccagcattga
     3241 aaacatggca acaagtcaaa tcccaagctg gtaacaatgc accgactgat tttgcgaaaa
     3301 aagttggttt agagtatgaa aacacagata ttggaccttc agaagtatta ggtggttcat
     3361 cttctgaatt ctcacctacg caacttgctt cagcctatgc atcatttgca aatggtggta
     3421 cgtacaacaa agcacattca atcaaaaaag ttgtagaagc aaatggtaat acaattgaat
     3481 ttgattttac gagccataaa gcaatgaatg actacacagc atacatgatt actgagattt
     3541 taaaaggtac atttgaagca tacggttctg cttatggtaa caaagtcgat ggtgtgaaca
     3601 tggcagctaa aacaggtaca ggtacgtatg gtgcagaaac atatcaacag tataatttac
     3661 ctgattcagc agctaaagac gtatggattt cggggttcac accgaaatat acaatgtctg
     3721 tatggatggg ctttagtgaa gtgaaacaat acggtcaaaa ctcattcgtt ggcagtagtg
     3781 aacaaaaata tccacaatta ctctttagag atgtaatgag cgatattagt ccacgtgatg
     3841 gttcagactt tacacgtcct gactctgttg caggtagtgg aaagagctta tatgttgcaa
     3901 aatcacctga tggcaataca acaagcaact ttacagaatc aagtaatggg acaaacagtg
     3961 gttcaagttc taacaacagc agaaatggta acaacggtca gaattggagc aatggcaata
     4021 acaattcaca acaaagtaac aacaataata gcaataataa cggtaatggt attttcggta
     4081 acttatttgg tcgttaaaat gccatacaaa aaggagcagg gacagcatga gcgccccgct
     4141 cctttttgta ttcgtctttt cacttatata aaacaaaaag taaaggtgaa gagcataaaa
     4201 gcttttgatg agattgatgc aatattttga ttaaatttgt cctctgccta tgattctatg
     4261 atttgtggtt cttgattgcc tgcatggctt cgcttttcga taggagtcct cctacagcta
     4321 attaacactt gattaaacta ttacatttgt tgcagtgtta atagattttg gaagcagtac
     4381 agaaatctca tgtgtcacaa agatttctgt actgcactcg tgatcaaaag cgtgcgcatt
     4441 gaggagtcag acagctactg cgataaacag taaccactat taaagtaaaa aaggaattgt
     4501 aagcaatatg cacacattcc cacaggagtc tcagccttct gagcaatctt atttcaaata
     4561 caggggactg atggcaagat tataaaacca agaaactcaa tcacatccat ttttgtatcc
     4621 cgctcctcgt tcgttttcaa actgttttat agtcattaat gaatcatatg tttaaaaatc
     4681 gtaggaatgg gactgggaaa actcattgcc ccattccttt gataaatttc aaaggaatat
     4741 catgtatgaa atagatgcat ccatggttgc catcacattt acaataagcg atggcgtgca
     4801 cgatatgctg catacatctt cactaattca gatttcagtg tcttcatttg ttgatatccc
     4861 atataatgat gcttacgtgt ttcgatatat gcaaaacgtt catcaatatt gaacggcaca
     4921 atacgtaaac tttcctgagt cactagccga taattttcca cttcattaat cacgttaaag
     4981 taacgaatta acaaattata atattcatcc aacaacgtaa ccgatgcatc atgaccaatt
     5041 ttacgctgtt tcgcgtattc gtctaatgct ccttctaatt ttgacatatt tgcaatgatt
     5101 tcttgatgat tcatgatgat gcacctgccg cttttttcaa tgatgcacga taacgttttt
     5161 gtccttcacg acaatcctca aacaatggac agacaccaca ctttggtttt ttcgctaaac
     5221 agtgataacg accgaaaaag atcaattgat gatgactttt cgtccaacgt tctcgtggta
     5281 tgatcgatgt gagtcgacgt tctacttctg tcacactatc tttccagcga caaatgccta
     5341 aacgtttcga cacacgttcg acatgtgtat caacagcgag tgcaggttcc ccaaatgcta
     5401 cactcatgac gacattcgcc gtttttcgcc ctacaccagc taacccttct agttgttcat
     5461 gggtatgtgg cacgattcca tcatattgat cgagtaaaga ttgcgatagt ttttgaatat
     5521 tttttgcttt attacggtag agcccaattg aacgaatatc ttgttgtaac tcttctaaat
     5581 ccacagctaa atagtcttct ggcgtgtgat acttctgaaa taagtcctta gtcacacggt
     5641 tcaccgtatt gtcggtacat tgtgctgaga gtaaaacagc tatcgttaat tcgaatgggt
     5701 tttcatgtac aagttcgcat tgtgcatctg gaaacatttg atcaatgaca tcaatcattt
     5761 caagtgcttt ctttttactt atcaaaagga ttctctcctt tcagccaatt aaatttcgga
     5821 atgtgttctg ttttttgagt aggttgttga ggttgctttt taaattttgc ccgtatcggt
     5881 tgtgcgtctt taactgttga gacattattt ttttgccaat tgagtaaaat acgatcaata
     5941 tatttgagtg acgttttttg gtgtgccaac gcttcatcaa ttgccgcatc aattaattca
     6001 atggcataat gatcgacgtc aatccattgg ttaagatgtt caatttctag tggtgataat
     6061 gcccgcccaa atgcagtttc gattttttta aacaccattt taaatgcttc ttcttcagac
     6121 gtcgtttctt tggatgtttc gatttgttta aaaatagaag ccaattgttc gtaaaagcca
     6181 tcaagattaa tatattcagt gaatttacct tcattatttt tttcaacgcg catcgccaat
     6241 aaaccgagtt gaatcaattt ttgtataatc gcggtcactt ctgatgattg catcgttgtc
     6301 ccctttttta acacatcaat agaaggctgc tcattagaag attcataagc atataaaatt
     6361 tttattaaaa tcactaaatc attttcgtta aggcccaatt cttgataatg ctcaagtaat
     6421 tcaaagcgaa tcacaacagg ccgtatttgc aattctcgtt ggttcattag ttaccctcct
     6481 atatcgccgt catgtgacaa caatgtattc ttgacgcacc gctatagtta gaataaaaag
     6541 agagtgagtg tgaaatccct attgtcaaag aatttcatct tctcaccccc gtaaaagatg
     6601 tggcgatggt atgcccatca acatcattac attggcatct cttatggata caaacgattt
     6661 aacaagcgtg ggaatggtga tgtttcacgc acatgttcca caccggcaat ccatgcgaca
     6721 gtacgttcta agcctaaacc gaaaccactg tgcggtacac taccatattt acgtaaatct
     6781 atgtaatatt gatagctttc tgtatcaagc tgatgttcat cgatacgttg ttctaacaac
     6841 tcgaggtcgt taatacgctc agagccaccg ataatttcgc catagccttc aggtgcaatt
     6901 aaatccgcac aaagcactgt gtcttcattt tctggatttg gttgcatgta gaatggttta
     6961 atttttgttg gataattcac aatgaataca ggcaagtcgt aatggttggc aatcgctgtt
     7021 tcgtgtggtg caccgaagtc atcgccccat ttaatatcat caaaccctgc ttcatgtaaa
     7081 aacttaatcg catcatcata agaaatacgt ggaaatggcg cttgaacttt ttctaatttt
     7141 gatgtgtcgc gttctaataa tttaagttcg atttgacaat ttttaagcac ggattgtacg
     7201 acatatgaaa catacgcctc ttgtacttct aaactctctt catgtgttgt aaaggccatt
     7261 tcaggttcaa tcatccagaa ttcaattaaa tggcgacgtg ttttagattt ttcggcacgg
     7321 aatgtcggac cgaatgaaaa tacttttccg taagccattg ccgcagcttc catgtaaagt
     7381 tgtccacttt gtgataaaaa ggcatcttca tcaaagtatt ttgtatggaa caattcactt
     7441 gtgccttcag gtgcacttgc tgttaaaatc ggtggatcaa ttttcgtgaa gccattttca
     7501 ttaaagaact catatgttgc acggatgatt tcgttacgaa ttttcatcac agcgtgttgt
     7561 tttttagaac gtaaccataa atggcggtga tccattaaaa attcagtacc atgattttta
     7621 ggtgtaatcg gatagtcgtg tgcttcgtga atcacttcaa tatttttgac ttgcatctca
     7681 taacctaagt ctgagcggtt gtcttcagta atttcaccag tcacatacaa tgatgtttct
     7741 tgtgttaatg atttcgcacg ttgaaagatg tcctcgtcaa catctgcttt aacgaccaca
     7801 ccttgcataa accctgtacc gtcacgcaat tgtaagaatg cgattttacc acttgaacgt
     7861 ttattcgcta gccaagcacc aatcgtgact tcttggccaa ttttattctt tgcttcttta
     7921 atcgttgttt tcataaccat tctcctattt gttttaatac tgttattatt ttaacaaaac
     7981 tattgccgaa cttctaccac atcatgattg atcgagttga gattgcattt gatggagcaa
     8041 ttgtccaaac tgtttgatgt tgccttcatg ttgttgaaaa tgtgtaaacg tattttggaa
     8101 aaagtgacga tattgactgt ggattaaacg attatcaaaa gaaacgacaa tcccttgatc
     8161 attttcattt ctcaaaaggc gacctaaacc ttgtctgaat cgcaacacag cttcaggtaa
     8221 gacataatct ttaaaaacat tgtcaaactc attggcaagt aacatcggtt tgacggcatg
     8281 atgattcata aatggtaatt tcgcaatcat gacacattta ataccgtgcg cctgataatc
     8341 aaatccttca aaaaatgtac tcgtccctag taatattgct ttatcaaaat gattgaactg
     8401 ttgcacgatt ttataatttt gactttgttg ctgtgacaat atcacataat cgtcaaattc
     8461 agccatttga tttaaataat ccatcacatt gtataacatt ttatagctcg tgaagagaac
     8521 gagacactta ctgtccacag tcgtgacgta acgggcaata tattccacaa tcgtttggat
     8581 atattcttct tgattttgat aattgtaacg tttaatatca ttcggcacaa agatgtgtgc
     8641 attggcgtta tgttgatgtt ctgacgtaat cttgtacgtt tggaaatgca catcttcttc
     8701 aaaccacttt tgataatttt taaaggagcc attaaacgtc agtgtgcctg aaacgaacga
     8761 aatcgattcg aactgtttta aaattttctc cgttaacaga tgtttgatcg atgcgtcttt
     8821 aagatgaatt ttaatcgtcg acttttgttg gacatttttt aacgtaatat aaaacaaatg
     8881 ccctgctttc aaccccgttt cgatttctcg taattgatcc acaatataaa gcaaatgttt
     8941 acgcagcgtt ttgaccactt tatgtttcat attattgaaa tgctcaagtg tgacattaat
     9001 tttggaaatg tattgatgta acaacggaat caattgatcg cgtttcatat cataggcata
     9061 atgtaatttc gatgtttcat catcatataa ctgaccttca tgcacttgat tgaaaatatg
     9121 gtcaaaaaag tgttcgttca tatcgtgaat ttcattaatg tcttgcttaa tgctaaaaac
     9181 atcaatcggt ggaatatcta acttttgtaa aatacgttgt tgctcgagtt gatcgatttg
     9241 ttttagcagt ttttcatttt ctgttttacc gattagccct aattggtact taatatcggc
     9301 ataaccgaac gcatgaatgg cacaatcaat cgcatagtcg ggcaatcgat gtgcttcatc
     9361 aataatgcaa tgtttgaaca tttgatagag tgtatgttca ggtgatgaat ataacaaatg
     9421 cgcatgattt gtaatgccga tttgaatttt ggatgcattc gttcgaatat ggttgtaata
     9481 atgaaaatct ttacgtatag gaacatacgt ttcgattttt tgttcaaaat acattttttg
     9541 gccaccgcgt aagttcagtt cttgaatatc acctgtccgt gtttctaata tccagatgag
     9601 caattgcatt tttaataaat taacatcata attggtcgtt tcatctttta atacttggct
     9661 gatgagacct agcgagatat agtcttgttt acttttgatt aacgtcgcat tgatcgatac
     9721 attaagtgct tcgttaattt tcggaatatc ttgtaataac aattgatttt gtaacatttt
     9781 tgtattcgtt gaaatcatga cgtgttcgcc tgtctcaata taatacatta aagatgcgac
     9841 taaataagct aatgattttc cactaccagt atcggcttca ataagtgctt tttcgttatg
     9901 cattaactgg tcaaacacaa tttgcgccat ataaagctgt tcttcacgat attggtaatg
     9961 acagacgtcg acaattgttt gatataaagc ggtcaaatta ccgtcaaact gaatgtgact
    10021 gacttcaaaa tcaggtgggg caagataata aatttgttca aactgattta atccagtcat
    10081 ttcttttgtc gcatcatgta aacggacttg ttcgaaaaaa tagtcgtcca attgatattt
    10141 taattgtttg cttaaataat agagctgttt cttcgtgtta atcggtaaaa cctcgaactt
    10201 ctcaaacgcc aaaatcatga tacgcgctgt tgtatacgcg tcttcatctg cgcggtgtgc
    10261 ttgtgtaagc ggaataccta atgattcggc taactctgtc agttgatagc ttttctctgt
    10321 tggaaacgca attttaaaga gttccaatgt atcaatgact tttttcggtt ggtaatgaat
    10381 atgacatttt ttgaatgaac gttttaaaaa attaagatcg aaatttacat tatgtgcgac
    10441 gaaaatacaa tctttaattt ttgaataaat tttatgtgcg acttctttaa aataaggtgc
    10501 ttgatttaac atttcttctt caatggaagt caatgcttgt ataaaagtcg gaattgttaa
    10561 atcggttttg atcattgagt gatagtggtc aataatttgg ttgttacgaa caaaagtaat
    10621 acctatttga ataatctcat cataatctgc ttggttgcct gtcgtttcaa gatcgacaac
    10681 agcataacag ggttgatgcg ccatatgccc cctcctttct ctctttatag attaaaattc
    10741 aatatctgca ctcattaaac ggtggaaatc accatctcga tcaacgacaa gtaaaaagcc
    10801 ttggtcatca atttccatta cgttaccata aaattgttgt ttgccttctg taaaacgtaa
    10861 ttgtttattc caaatatttg agcgctgaat atattcatct ttaatggttg taaaaggctc
    10921 agtcaaaaat tgttgataac gtacttcaat acgttgcatc aattgttcta aaaagtcata
    10981 gcggttaata ttttttccgt aatgcaattt aacactcgtt gcagtttgtt gtaatgcttc
    11041 gtcaaaatct tcaacgtcgt gatttaaatt aatgccaata ccacaaatga cagcctcaat
    11101 cccatctgca tttgctacca tttccgtcag aaacccgcat actttttgac cttctatgta
    11161 aatgtcattt ggccatttaa tttcaacttt tgctggacta tatgactgaa tcgcttcact
    11221 gattgctaat gacataaata aattaaacgt cgtcagcatt gaaaaaggaa tgtctggtct
    11281 taaaacgagt gacatccata aacctttgcc ttttgatgat tgccaaacac gtttgaaacg
    11341 cccttttcct gctgtttgtt catcgcttaa aatgagcata gtacgatcat cgtttaaaat
    11401 tgccttttta gcgacttgtt gtgtagagtc tacagatgga tatgtttgaa attgattgat
    11461 aaatgattga tgtttaaaaa ttgaggtcaa taccccttta tgccatgctt gcggcaaagc
    11521 ttttagctga tgccctttat tgtgaatcga atcaattgaa aacccctctg ctttaagttg
    11581 gtccactgtt tttttgaccg tcatccgtga aacattgagt tgttctgcaa tcgtctgccc
    11641 agaaatatag tcgggtcttg catctgttaa tagttctaat atttgatcaa gatattttga
    11701 catgtgttct cacccattca atgatagctt ctgtttgatt gttgacttga cgttgaatca
    11761 cagcacattc gacttgtcgt aaaacgtctt tgatccacgg tccacctttt aattggaacg
    11821 cttgcattaa ccatttacca tctatggcta aatcttctcg tgattgaatt ggtaaatctt
    11881 cccatacggc ttggagactt gcactgctaa agataatcgg tgatggtaaa tcaatttggt
    11941 tatcttctaa tatcggtcgc agttcattaa tttttagcgc aacctcaaga ccaaaatcgt
    12001 acgtaaattg ttggagctgg actttagtat ctattgtttg tgcaacttga atggccgata
    12061 ttaacgtttg aattgtgcga acttgtgcat tactcagttt taaagactta aacgcttgat
    12121 agtttgtgcg atagctgaga atggctaaaa atgcctccat atcaatcggt gcatttattt
    12181 ttatcgctgc gacatcgaca tctttgaaat acgggatgta acgccacaat tgcaaagctt
    12241 caagtatggg gaaggttttc gcaacaaagg tccctttaat taataatgtt agttcgttca
    12301 taatgcgttc aatggataaa tattccaaat ccgacatttg gtgtgccatc gcttcaaacg
    12361 ttgcctcttc aatcgtaaat ccgagctgtg acttaaaacg taaaccgcgc aatattctta
    12421 atgcatcttc gtcaaagcgt gtttttgcat cacctaccgt acgaatgatg cgctgttcaa
    12481 tatcacgttc gccttcaaaa tggtcaatac gttcatagtt gatattcatc gctatggcgt
    12541 tcatcgtgaa atctcgacgt tccacatctt ggtataaatc cctgacaaaa tatacttctg
    12601 tcgggcgacg atgatccaca tattcagctt cagcacggaa agtcgtcact tcataatttt
    12661 cgtgtgacca tacgacattg atggtaccat gttctttacc aatgggaatt gtatgttcaa
    12721 agagtgactc gatttcatca ggtgtcgcat ttgtcgtaat atctacatcg tggataggac
    12781 gattcataat aaaatctcgc actgagccac cgacaaaata agcttcatat ccatgttgaa
    12841 ttaaacgttc taaaataggt ttggctaatt caaattgaga ttgattcatg aattacaatt
    12901 cccctatcat ttttttataa taatgttcat actgatcggc gataatttgt gaatcgaacc
    12961 gttttgcaat atcgtgtaac atattttcac gtaacgattg gtataatgca ctatctgtca
    13021 gtaattttag cgcgtagtca gctgcagttt gactgtcccc gatatccact aaaaagcctg
    13081 tttcacgatg ttgaatgact tcttgaatgc cacctgcacg tgtaccaata ggaacgacgc
    13141 ctgttttcat cgcttctaac agggtaaggc caaagctttc cttttcgctc attaataaca
    13201 caatgtctga catttggtaa aaattactca tacaatcttg tttacctaaa aagagtacat
    13261 catcagaaag acccatttca cggactttta ttcgcatatc atgtaattca ggaccgtcgc
    13321 caatcagcaa caatttggat tgaatgtgtt cgcgaatgag agcaaatgta tcaataatcg
    13381 tatcaattcg tttaacttta cggaaatttg acacatgaat caatactttt tcatcttgag
    13441 taatgccata actctctttt aaatctgtat tgtaacccgt cggaaattcg gattccctta
    13501 cgaaattata aatcggtaca atctcttttt gaggtgcaat aatctcattc gtttcgtctt
    13561 ttaatgattc gctcacactc gttacaatgt cactttgttc gatgccgaat ttaattgcat
    13621 ttcttaacga gtgatcatag ccgagaactg taatatctgt gccgtgcaaa gtcgtcataa
    13681 ttttaatatc tttaccggac atttgtctcg ctaaaatccc acaaatcgca tgtggaattg
    13741 cgtaatgcat atgaagcaca tctaagtcat actcatttat aacatttgcg atttttgtac
    13801 ttaacgaaat atcataaggt ggatattgga atacagcata ttgatttacg tcaacttgat
    13861 ggaaagtaat gttaggtacc ggtttattta agcgaaatgg catgtttgaa gtaataaaat
    13921 gcacttcatg cccacgttcg gccattaaaa taccgagttc tgttgcaatg atccctgaac
    13981 cacctactga gggataacaa gtaatgccaa tcttcatata gctcgtactc ctttatgtct
    14041 ttctttcaaa acgattttta tcgcgtttgt tgaatttttt cattgtttgg ttaaagcttt
    14101 ttgtcatatc gatattaagc gagtttgcga gacaaaggag aacaaaaagg ttgtcaccta
    14161 gttcagcttc gattgtattt tcagcctcac tcgctttctt ctttttctct ccatgatagt
    14221 ggttgatttc acgtgccaat tcaccaactt cttctgttaa gcgggcaaga tttgcaagcg
    14281 gagaaaaata acctgtttta aactgtgaaa tgtatgtatc gacttctttt tgcatatcag
    14341 agagtgatcg attcatgata tgacatcctt tctgttttca ttcttcttta tcttacatga
    14401 aatgtgtggc gttgagcaat ctatgcacct ttttgataga tgaaacacta ttttttatag
    14461 tagtacttta tcaatataat tcaccaaaac taaaaaaaga gctgggcgtc tgtcccccaa
    14521 ctctttttcg cttactattg atctgctgaa cgtgcgatta aaattaaacg aacgagttca
    14581 gcaactgcaa cggctgtcgc tgcaacataa gtcatcgctg ctgctcttaa tacgcgaccg
    14641 gcatgtttat attctttttc attcacgata tgcatttttt gtatttgatt cattgctcgt
    14701 ttacttgcgt caaattcgac tggcaacgtc acaatggaga acaatacagc aaatgccatt
    14761 aagaaaatac caatccataa cgctgttgaa ccaatcgcca tgtgtaatga tgtcatgata
    14821 atcccagcca taatgaaaat atatgacatc gaactaccga tgttcgctac aggtactaat
    14881 gcactacgga aacgtaaaaa gaaataacct tcgtagtgct gaattgcatg ccctacttcg
    14941 tgagcggcaa ttgcagttcc ggcaacactt ggtttgttat agtttgaagg tgacaatacg
    15001 acgactttgt ttttcggatc gtaatggtct gttaaaaatc cttgaccttc tttgacttcg
    15061 acatcataaa tgccatttgc gtgtaaaatt tctaatgcta cttctcgtcc cgtcttgcca
    15121 cttgttgatc taacttgagc atatttttca tagttagatt taacttggtg ttgtgcatac
    15181 attgggagga tcataagtat aataaaataa ataattaaag acatgataga cattatgctc
    15241 actcctttat aatattattg tactggcttc atcaaacttg gtcaatcttt ttacccctgc
    15301 tgagtcgata aattacaaac aaaattggca ccactgataa ccaaaatgcg aggtaaccaa
    15361 tttgtgcttc ataatgtcca agtccgccgt atactggata ttgatgaaaa acgtaatcga
    15421 tcacatcatt atggaaaacc caaaagattg taatggctat actcgttaac gtaaatttga
    15481 attgtggtaa aaataataca gcttgaatcg ccataatacc gtgagaaata attaacagga
    15541 cacccatcac ataaatagta tcgtcctcta taaataacag aaaattcatc atgactgccc
    15601 aaacgccata tttcaataat gtgacaaaag caagcgtatc aatgatggca ctttgttttt
    15661 tacataatag taagattaag ctgacgacta aaaataacgt cgcagtggga ctatcaggaa
    15721 taaatggcca aaaataccac gctgatctat aaagttgtgg tgtataccaa atataaccat
    15781 aaagcgtccc caaaatatta ctcatgataa tcaatatgag tattggacgt tgatagaaca
    15841 acatattttg tagagctgtc cacatgattg agatcccttt cgtcagtcat tgtttaagtt
    15901 ttgtcagtaa tgtgcctcaa tttaatgaga tttaatattt ttgtatagtg cttaaataat
    15961 tgaatatctt tcaaatttaa acttaagtca atatgcgatt ttaataagtg aatgatttgc
    16021 tgctctgtac tattagagaa ctcgatatga tacatatcct tatgataagc atctccattt
    16081 tgcgttgcga gcagttgttg caataataaa tggtcgagac gtaaatcacg attagcttca
    16141 tggttaaaat gaattttaac gtccagttgc tgtgaatgac gaatcacttg gtgaaatatt
    16201 tcatcggtgt tcatcaacaa tgtctcacct tcatgatatt gaatcgctat gacaggcgca
    16261 tccgacacag ccatttctaa agtaggatga tctgctacga tttggtcgac aaaatgaatt
    16321 ttttcaatca gtgcatggtt cgttttaatg aaattcagta accatacact gatacgagat
    16381 ttaaactgat agtgaaagag taaatactcg ataaagtcac gtttttcaaa atttaaacgt
    16441 gtatctagca taaataatca ccctaaagta atcgtccttg ttctgcatcc cactcagggt
    16501 taccactatc tttttgcaac agtaattgaa gaatggattt agctggttcg atttgaccga
    16561 tttcaatgag ataatagtag taatctttta agaaatcaat gttgtcacgc atcgatgcaa
    16621 acgctaaacc gtaaaaatgt tgtgcttctt tatcacgttc ttcttgtcct aatgcatatg
    16681 cgagttgcca catgaattga ggatccatat cttcttcatc gacatactga actaattcaa
    16741 ttaatgcttc ataatcctct ttattacgta aaaagtcagc taacatcagt aaaggttctt
    16801 gatagcccgg atccacttca agtgcttgtt ttaataatgt cacaccttca ttttgatcgc
    16861 catgttcaat ttgcaatgca cccgtactgt acatcaattc tttataaaac tggttgagac
    16921 gtaagccttc ttgaccgatt tcaatcgcat ctccaaaagt tttctcgttt tcataaagct
    16981 gttgtaaata gtaatagcct tgaatgaagt ctggatcttt ttgaagtaat gttttcacca
    17041 acttaatcgc ttcatgcgtc atgtcattct tttcatacgc aatcgctttt ttaagataat
    17101 catctgatgt cagttcattg tcattaattt catcaaacca acgtagggca tcggtatagt
    17161 ttccgctttg aagactgctg tctgctatac gtgagaataa gttgacgcca ttgatttcat
    17221 actctccact ctctagtaca gtgtcatact ctcttgatgc gcgcaaatat tgaccatcat
    17281 agtaaagtaa ttctgctaat gcaaaatgga caatcggatc agcaggttgt atctcgattg
    17341 cttgttcaat tttttcaatc gcaatatcta tcatattaat ttgttgatat aaatcagctt
    17401 ctaacattaa acgttcaggt gtcagtggca cttcatttaa aaactctaat gcttcatctg
    17461 tttgattttc tgaaataagc ccatcaataa aatagattaa aatttcatct tcatctggat
    17521 atttcatgta aagcgtacga aaaacttcaa ggccttgtgg tgtcagtccg aattgatata
    17581 atgtctcacc cagtacaaac aatgcatcat cattatctga ttgcaacgct tcctgaacgc
    17641 gagaatcaag ttgatctaat ttttgtaagt tgatatcgtc aattaatttg tagatatctt
    17701 gcatactatc cctcattttc taattgttta agtagtggca aaaaacctgg gaatgacaca
    17761 ttgacactct cgaattgtgc aatctcaatc ggttctggtg tcataagtga agcaactgct
    17821 aacatcatac cgatacgatg gtcgttatga ctgtcaacag gttgaatttg actgattgtt
    17881 gacggcttaa tgatgagtcc gtcgtcagtc ggttcaagtt ttagacctag cttaccgagt
    17941 tcgtttgctg ttgtatcaat acggttggtt tctttcactt ttaattcttc agcatctttt
    18001 atgatacttg aaccatgcgc ttgtgtacag agtaacgcaa tcgtcggcag ctcatcaatg
    18061 catcttggaa tgagactgcc accaatttct atacctttta agtcatccgt atattgaaca
    18121 cggatcgtcg cagttggctc tggaccattt gtttgatttg aaagtgaaat tttgccgccc
    18181 atgcgctcaa caatttcgat aattccatca cgtgttgggt ttattccgac attatgaagc
    18241 gtaatgtcgc tacctggtgt aattaatgcc gccacgatga gaaagactgc cgatgaaata
    18301 tctccaggca catcgaaatc acgcggttga atatgatgaa tcccttcccc tggtagggtc
    18361 actgttaaat cttgtgtttg cacagggata ccataatggg caaacatcgt ctcagtatgg
    18421 ttacgtgaca aatctatttc gcgaatagtc gtagtatttt gagcaaataa gcttgcaaac
    18481 aaaatggcac ttttaacttg tgcgcttgca actggcattt cataatgtat ccctttgact
    18541 tcacttgagc caatgattag cggcgtgtag ttatcctcta cacctgaaat gttgacattc
    18601 atttgtcgaa gtggttggag cacgcggtcc ataggtcttt tgccgataga cgcatctcca
    18661 gatagcacac tttgaatgcc taatccacca agtaatccgg ccatcaatcg tgttgttgtt
    18721 cctgaattac ctgtatataa cgtttggtgt ggcgtttgaa aatgagcgta accaggagaa
    18781 tcaattgtaa tggcttcatc tgtaatgtcc attttaacgc ctaacttttc aaatattttt
    18841 gctgtacgta aacaatcttc accgagtaaa ggttgatgta taacagagtg tccttgtgct
    18901 aaagaagcaa gcataatcgc ccggtgcgtc atagatttgt ccccaggtac tgatgcttca
    18961 cctatcagcg gcccgttaat cataattttt ttcatctata tcacctcaag atattgttgt
    19021 ttgaatgtct caagtgcttt ttctaatata ggtatctcaa catgtttaac gattgggtcg
    19081 ccaattgctt gtaacagaac catccgcaca ccctttgcgt catttttctt gtcattgcgc
    19141 ataagtttta ataagggttc gaattcaaat tggcgaatga tatctagcgg ataacctaaa
    19201 tgatttaaat atttcaagta atgtggaaca tcaaaatgcg tgcccaataa tagatttgaa
    19261 acgataaatt gatagacaat ccctatcata acagcgtgac catgtgcaag ttgatattga
    19321 tactcgatcg catgaccaaa tgtatgacct aagtttaaaa attgacgttg accccgttct
    19381 ttttcatcat tcaaaacaat ttgcagcttc gtttgaatcc cgttaattaa atactgttca
    19441 atcgcttgta gtgtttttaa atgcatgcta tcaggataag cattttcaag tatctgtact
    19501 gattgcgcat tattcaacaa tgcatgttta tacacttcac catagccgct taaaatttcc
    19561 gaataaggta atgaagtgag gaactctaaa tcataaatga ccgcttttgg acgatgaaag
    19621 gcaccgacaa gatttttacc atgtgtcgta ttgatgccca ctttaccgcc aatactcgaa
    19681 tcatgagcaa gaatcgttgt aggtacttga ataaaatcaa cgccacgtaa taatgttgat
    19741 gctaaaaagc caacgaaatc accagttgca ccgccaccaa ttgcgattaa gcacgtatta
    19801 cgtgtaggtt gatgtgcaag tagcgcttca atataacgtt catactgcgc catatacttc
    19861 acttgttctc ctgaagggat ttgaaacgtg gtatatgaat gatggtgaac gaacctagaa
    19921 attttttgtt cccaagctgt atagacgttt tgatcgacaa acacaaacac atgttggtag
    19981 tcagaaacta acgcatctaa ttggttgaat gcggcatgtt caataataat cggataattg
    20041 tggtccggat atgtcgttgt taattgcatg atttatcacc tgtcattaaa atgtttggtt
    20101 cagcgcgcgt ctttcagcga cttgttgtgc gagacgtgaa aagtcctggg aaccgaactc
    20161 ctctaaaaca cttctcgcaa tttcatatga aacagcatgt tcacaaacaa tacttgcagc
    20221 aggtaccgca cagctgtcag aacgttcaat tgttgcttta aatggttctt tagagtcaat
    20281 atctactgaa gcaagtggtt tatacaacgt tggaataggc ttcatcacac cattcacgat
    20341 aattggcata ccgtttgaca taccaccttc taaaccgccg agatgattag atgcgcggta
    20401 atagccttgt tcctctgaat ataaaatcgg atcttgaatt tcactgccta atttttctgc
    20461 cgctttaaaa ccttcaccga aacttacacc tttaaatgcg ttaatgccaa caacactttg
    20521 tgcaattctg ccatctagct ttctatcata gtggacataa ctaccgattc cgactggcat
    20581 atggttaaca atgacttgga cgacaccgcc gatagaatct ccctcttttt tggcactatc
    20641 aattttatcg cgaatcgctt gtgcaatact gtcgtcaatg acacggacat catttttatc
    20701 aatattttca ataatggtat caatgttata aatgccctcg tcttttatgc cgccgatttc
    20761 aatgacacgg ctataaacgt cgatgcctaa ctgtttcaac aattgcttac aaagcgcacc
    20821 aacagcaaca cgtgcggctg tctcacgtgc agaagagcgt tcaagtacat tacgcaaatc
    20881 acggtggtta tatttcatgc caccaaccaa atctgcatga cccggtcttg gtttcgtaat
    20941 gacgcgtttc atattttctt tctcttcttc tgaaataggt gccgcgccca taatattacg
    21001 ccaatgtgtg aaatcatcat tcttaatgac gatcgtgaca gggctgccta atgtataacc
    21061 atggcgcaca cctgaaacga tttctaccgt atccttttca atttgcatac gacggcctct
    21121 tccataacca ccttgacgct taaacatttc ttcgttaatt tgatcaatat caatagtcat
    21181 atttgctggt agcccttcaa taatgacagt taattgtgga ccgtgtgatt ctccagacgt
    21241 taaaaatctc aacatgatga gcactccccc taccgtttag ttcatatgtt tcatataata
    21301 gcacaaaata gaaaataaat taatagaaaa cactttttct attcaccgct tttaattgtt
    21361 aaagtaagtt cgataatttc tatttataaa cttggtgttg tcgaccattg tttgaatcaa
    21421 tgtaagtata caatccagac ttacaaaatg atgatgacga aatgatgtgt agaaacaaat
    21481 tgagggccca gacaactaaa tgtccaggcc ccattaaata agtttaaata ttacgcttca
    21541 tataaccatg tttcatctgg tgtatggtaa gaactgattt cttcgtcttt aaaccaaagt
    21601 ccaatttcac gttcagcaga ttccactgag tctgaaccgt gaatgacatt acgcccaacc
    21661 gttaaaccta aatcgccacg aatggaacca ggtgtcgctt cagaaggatt cgtactgccg
    21721 ataatatgac gtgcaacggc cacagcgttt tcaccttcaa caaccatcgc aaaaacgggt
    21781 gctgatgtaa taaaagaaat aagtgaatcg taaaatggtt ttcctttatg ttcaccgtaa
    21841 tgtgtctcag ctaaagattg cggaactgtc attaatttag ctcctacaag ctttaatccc
    21901 ttttgttcga tgcgttgaac aatttcacca attaatttac gttgtaccgc gtccggttta
    21961 atcattacaa aacttttttc catgatgcgt aatgccccct gtgtttttat gtattacaag
    22021 attatcctat catttgtatg aagcgctttc aacaggaaag atgtttaatt cattctgctt
    22081 tgcaatcttt ttattaattt tctgaaatgt ggtttaattt catttttagg caatgtttcc
    22141 aataacgtcg aagctttgtc gagatatttt tggcttacat ttaaagattg agaaatcgct
    22201 tctgattggc gtatttgttc aatgcaccag tcaaagtctt cagttggtga acctggcgtt
    22261 aatgttgcga ctttttcttt taattgtggg ttctgcttca tcgctaataa tacaggaagt
    22321 gtcatgtgac cattacgcaa gtcacttccg acaggtttac cgagtttctt ttcagtactc
    22381 gtaaaatcta aaacatcatc aacaatttgg aaactcatgc cgatatgatg accaatatca
    22441 cgcatttttc gaatcgttgg atcgtctgtg tgtgaactca tcgcacccac ttcagtagcg
    22501 agctgcatta atagcgccgt tttacgattg atacgacgca aatagttcgt aatcgattgt
    22561 tctgctctaa attggtcttg aaattggaaa agttctccgc gacacacttc tataatcgca
    22621 tgtgacagtg tttgatgaat acgactgtcc tgaatataag ataaatgttc taacgcacga
    22681 gcaagtaaaa aattaccggt taaaatcgca gtcggttgat cccacttctt ctcgattgtt
    22741 aacttaccac gtcttttatc actgaaatca atcacatcat catggacaag cgttgccata
    22801 tgaatcagct ctaacgctgt agcaacacga tatgccgcat cattagcagg attttcaccg
    22861 acgtaactgc tcaatatcac gaataacgga cgaacgcgct tacctcctga tgataaaagg
    22921 tgatctgcag cactttggag tgttgaatcc tcagattgaa tcaactgttt caaagtattt
    22981 tcaatttttt taatttcctg attcaagttt aatttcgaca tgcataatca ccttttaatt
    23041 agttcgtttt gggtttataa gctaagtgca ttgcagctac gccacctgta aagctacgga
    23101 ctttgacatt ttcaaagttg acaccttcaa acattttctt taaagtttcg cgatctggaa
    23161 aatcgaatgc agactgttga agccattcat attcttgttt tgatttcgca aaaattttgc
    23221 caaagatagg catcacaaat ttaaaataca aacgatatcc ttgcttgaag acaggcattg
    23281 tcggttggct tgtttctaaa cacacaacca taccccctgg tttcaggacg cgatacatct
    23341 ctgacaatgc ttttgaataa tctggaatat tacgtaatcc aaatccgatc gttacatagt
    23401 caaatgtatt gtcatcaaac ggcaatgcca tcgcatcacc ttgaacaagt ctaatgttgt
    23461 ccatatgcgc cgttttttct tcgcccactt taagcatatt ttcactgaaa tctattccag
    23521 tgacttcacc ttccggccct actgcttggc ttaaagcaat ggtccaatca gcagtcccac
    23581 aacagacgtc caaagcaatt gtccctgctt ggacattcat ttctttcatt acttttttac
    23641 gccacacttt atgttgttcg aagctaataa tattgtttaa acggtcatat ttgccagaaa
    23701 tattttgaaa cacttcatgg acttgtgctt tatttgcctt gtttttagtc attttgaaac
    23761 ctcatttact ttttgtatag ttttgtaatg cgatgattat gtcattgatc tcatccgtct
    23821 gccaatcaat taaataactc agttgttgca cgtcgagttg ttgaatcagt tgatggcgta
    23881 tatcatcaaa ggactgttgg atacggtaat gtttcatcaa tacttgaatt aacaatgttt
    23941 caatcgtaat catcatatct tttaaattta catcagtgcg tatatccttt tgatgttgaa
    24001 tataagattt taattcattt atttttacaa tcgcttggct catttgaagt tgtagttcaa
    24061 catctttcaa atcagcaagt aactgataat agtgtgcact cagcaaatca cctatgagta
    24121 tggcatcacg ttcataatga tagtaactga tacgatcaag atgtttcatt gatgtatcaa
    24181 tagagagaca cgcaagtttt gcatttaaag gcacatcaag ttgatctaac aattgactta
    24241 aagttcgatt gatatgtata ttttgggggc gattgagttg gttcaatcgt ttatcaagtt
    24301 gttgttgtaa acattcaaaa gtattctcca tttgacacac ctctaatttt aatcactctc
    24361 tatcttaaca ctatcaacct aaaaattaaa tctgatttgc tttttttgtc ataaaagcca
    24421 tgaatgaagt ttgatgtcgc ttgatttaat gttgctgaaa aaattcgtat caaacaaagt
    24481 gacgaggttt tcttcgtctg aagtgaatat attttgttta aaaagt
//
LOCUS       DANHOL010000021        24180 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.021, whole genome shotgun sequence.
ACCESSION   DANHOL010000021 DANHOL010000000
VERSION     DANHOL010000021.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 24180)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24180)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24180
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.021"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            <1..590
                     /locus_tag="PTC08_000596"
     CDS             <1..590
                     /locus_tag="PTC08_000596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HDK5682126.1"
                     /translation="QLLNILNAINNENEEVMNTSEAELKTDVYKLNLVYKKYNKEGDR
                     IGSQRIFFNHESEGTKKLITLALNILDETKRGSVFVMDEFDDSLHLNISKIMIKLFNL
                     MENRSQFILTSHQLFLLDCDLRVDQIYLAKKDFEGASELYSIFDFNDDYGKRSDLTIF
                     KRYLEGVYGAVPNVTINDFTTLIGKKHHVDGGEDE"
     gene            978..1916
                     /gene="mdh"
                     /locus_tag="PTC08_000597"
     CDS             978..1916
                     /gene="mdh"
                     /locus_tag="PTC08_000597"
                     /EC_number="1.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HDK5682127.1"
                     /translation="MRRKKVSIIGSGHTGATLAFIVASHGNADVLIVDREKNASVMKG
                     KTLDMQQSGSILGFNVHVNSTVDYADTKDSDVVVITAGVPRQPGMSRDDLVQTNEQVM
                     VEVTKKIVQYSPHCTIIVLTNPVDAMTYTVYRTSGFPSERVIGQSGVLDTARFNTFVA
                     EALDVAVNDVTGLVLGGHGDTMVPLVRHSQVNGVPLNELLPPEKIEEIVERTRKGGAE
                     IVQLLGTGSAYYAPAAAVYEMLIAILEDQKRVLPTIAYCQGEYQLDDIYIGVPTVLGA
                     NGVERIIELELTDEEKAQLKRSAEAVEGVKAALKSL"
     gene            complement(2047..2757)
                     /locus_tag="PTC08_000598"
     CDS             complement(2047..2757)
                     /locus_tag="PTC08_000598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease"
                     /protein_id="HDK5682128.1"
                     /translation="MHMSSKQVAWRDLWAIVIYFLAQIILGNVFSLFLIPSTQIPVAM
                     ALLIVGILTSIFVIIYLAWSHRHGLKTKITVALMQSRKHIKLMISVYVLYMIANMIFT
                     YVLQLLPEQWQFKETGNQEALMAFFHQPAWLPLVFLSLAILTPITEELLFRHIIIGEL
                     GKKWGLMFTGLISIVIFASLHMFAAHHPLEAVPYIFLATMFVVAYIKSGCNIAVSIFL
                     HMFNNTLAFIGVLFQIFS"
     gene            complement(3061..3678)
                     /locus_tag="PTC08_000599"
     CDS             complement(3061..3678)
                     /locus_tag="PTC08_000599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1361 domain-containing protein"
                     /protein_id="HDK5682129.1"
                     /translation="MNARYIARITYVVLILISILIPNQLMFLTLNVSLAYIPLELAYL
                     IKLFIPRRAFEWPLFIIYLFIFILMLPNTFYMVTDLIHLNQFTFNFLAELNLYEWFHF
                     TLLISSVIFSLYCYVLIVMEIYHLIQVTPLRIVALFGMMVLSGLGIYVGRFLRFHSVH
                     IINHPFSVIVSTLKSLNLEALIFVSFIILIQALLFLFVKGVRSRT"
     gene            3996..5162
                     /gene="norA"
                     /locus_tag="PTC08_000600"
     CDS             3996..5162
                     /gene="norA"
                     /locus_tag="PTC08_000600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter NorA"
                     /protein_id="HDK5682130.1"
                     /translation="MKKQFIILYLNIFLVFLGIGLIIPVLPVYLKDLGLTGADLGVLV
                     AVFALAQMLISPFGGTLADRLGKKLIICIGLVLFSISEFLFAWSHTFSLLIVSRVLGG
                     FSAGMVMPGVTGLIADLSPPKDKARNFGYMSAIISAGFILGPGIGGFLAEISHRLPFV
                     FAGVLGVLAFICTLLFIQSPKRATTQGFAQFDSTEFGKINYKAFITPAILTLILAFGL
                     SAFETLFPLYTADKMDFTPGDISIAITGGGIFGAIFQVFLFDKMIRRMSELVFIIYAL
                     IYSAFVLMLLIFAHSYWQVMLICFIVFIGFDLIRPALTNYFSNIAGNRQGFAGGLNST
                     FTSMGNFIGPLIAGGLYDVNIEYPLYMSIMFMLLGCIVILIEKQLRRHQNLKQS"
     gene            5300..7624
                     /locus_tag="PTC08_000601"
     CDS             5300..7624
                     /locus_tag="PTC08_000601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-glycerol glycerophosphotransferase family
                     protein"
                     /protein_id="HDK5682131.1"
                     /translation="MHIKILGYNIFQKGGTTRSNLNLIQSFLRAGHQVTYVNYMHFRQ
                     RQVSQLKAEEGQAIEGAQFIAFRGAQTLAQADLLILTREDFFEFAREVKHRTSEMRIL
                     GEIHSPLAYLNPQMDLALEAIDAVRVSTPKIAEAFQERYDYPYVFPMYVNHQHVQFQT
                     QPVHQTHNLLMKARFEDEIKDISYVLKLMRYFVYTQGETRIHLYLQGYGPSLELYENL
                     VVAYHLEDYVHINGSEPTDYIYVSTSPYETFGYSILEAMAQGNRVCLYPGEDGVLKDI
                     YAPFHAVTWITKSLESDAAKIVEMVNGKYTDTEREADVETFHTQLAQGHDTEALIAQT
                     MAMAAAHTIDVSQIAKPKMKASYRYVQNTAKRVVVKVKETAEQAPKSPFRKGSRLYQF
                     TRKGLFNVEAQVKKFQNQRRHVSGQAVFIESFHGKNFSGDPKAIACAMKRLYPELTIY
                     VSAADPLVEMEIRSYDMTPIRFGTRAYMRAFERCRYAVINGNLWDRLVKHPDQQVIQT
                     WHGFPLKRMVNDLVDAVERQKQAQQFAPRMQKWNVLLSTSERYETYIRSAFRLDTHPN
                     LTILRHGAPRNSLLIRHQNDEAKWLEIQEKYFFQRDATKKYILFCPTWRKNARQSVSE
                     LDIVALLERLPSSYEMIVKLHPNEGHLRELYQNLHPRVHCFFNEMVDIQELYLISDVL
                     ISDYSSAMFDYAHLNRPILILDEDTVDYQQDVGFYFDMTEFPSIQKVTPDVEKIQQYI
                     ETTSSVDHQKVIAQLMTYDQSDSDEQVVRSIVAR"
     gene            7647..8126
                     /gene="ybaK"
                     /locus_tag="PTC08_000602"
     CDS             7647..8126
                     /gene="ybaK"
                     /locus_tag="PTC08_000602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cys-tRNA(Pro) deacylase"
                     /protein_id="HDK5682132.1"
                     /translation="MAKQKKTNAMRQLDRAKVNYEIRTFEVGEGHLEGHEVAALINAN
                     SAEVYKTLVLENANHEHFVFVIPVTAHLDMKAAAAAVHEKKLHLMPLDDLKKVTGYIR
                     GGCSPIGMKTHFPTVINGTIELLDRVFVSAGQRGVQMGLAPHDLIEMSHAEVKQVIQ"
     gene            8279..8455
                     /locus_tag="PTC08_000603"
     CDS             8279..8455
                     /locus_tag="PTC08_000603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VraH family protein"
                     /protein_id="HDK5682133.1"
                     /translation="MKVRDYFERVKENLLDMKIGSKSFVIMIVSMVLLSTIFTPFIGI
                     PAGAVIGSYAYERY"
     gene            complement(8501..8704)
                     /locus_tag="PTC08_000604"
     CDS             complement(8501..8704)
                     /locus_tag="PTC08_000604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682134.1"
                     /translation="MLKNRKERLTAAIISLIISIAFVVLDIFNIMTKESNTALVLSIS
                     SLLVFWTFIVIDIYVLYKLKKEA"
     gene            complement(8815..9024)
                     /locus_tag="PTC08_000605"
     CDS             complement(8815..9024)
                     /locus_tag="PTC08_000605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682135.1"
                     /translation="MKKNHLDEALTGISILDLIFVVPFFALFSYLPLEHWWQWIINII
                     IVVLCALGATYLFYTIKKRFNSDHH"
     gene            9286..10038
                     /locus_tag="PTC08_000606"
     CDS             9286..10038
                     /locus_tag="PTC08_000606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HDK5682136.1"
                     /translation="MLTEKRHELILTALDQHQFLSLQHLMEFTGSSASTIRRDLSKLQ
                     DDGKLTRVHGGAKLISEQKEPELHEKRTQHIDEKVEIAKRAAQLVNDGDCVYLDAGST
                     TLEMIPFLTAKDITVITNGLPHVEALLKKGIATKIIGGDVKANTLAVVGSRAVSFLQH
                     YRFNKVFLGVNGIDCEAGLTTPDEREAIVKETAMQHAQQVYILADTSKFNQQYLAAIH
                     ATEQPILITSEKARHMRHFDIYDNHFEILGGK"
     gene            10038..10961
                     /gene="pfkB"
                     /locus_tag="PTC08_000607"
     CDS             10038..10961
                     /gene="pfkB"
                     /locus_tag="PTC08_000607"
                     /EC_number="2.7.1.56"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-phosphofructokinase"
                     /protein_id="HDK5682137.1"
                     /translation="MIYTVTFNPSIDYVMFVDDFAAGALNRTTAIAKFAGGKGINVSR
                     VLQTLQVPSTALGFIGGFPGQFIENTLKEEGIHTAFTQVDEDTRINVKLKSQTETEIN
                     AAGPHITETQVATLFEQLYVTTAEDIVVVAGSVPASLPDTIYIDIAKIAQQTGAKLVV
                     DAEKSLIEGILPYYPLFIKPNQHELEAMFNTKIETDQDVLTYARRLVDKGAQSVIVSL
                     GGAGAIYADREVAYKIQAPQGQVVNTVGAGDSTVAGMVAGISQNLALPEALKLAVASG
                     SATAFNDDLAQYDMIQELQAHVTIQPLNEEG"
     gene            10963..12861
                     /locus_tag="PTC08_000608"
     CDS             10963..12861
                     /locus_tag="PTC08_000608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HDK5682138.1"
                     /translation="MRITELLTKETIAMDLSATTKDGVIDELAQQLNQAGKLNQLDDY
                     IAAIHKREQQSSTGIGEGIAIPHAKVEAVKTPAIAFGKSKAGVDYDSLDMQPAHLFFM
                     IAAPATGAQTHLDALAKLSSVLMDENVRQALLEADSPEAVLAIINKADDEATDDDTEA
                     TAEPAPVDHDEPYILAVTACTTGIAHTYMARDALKKQAEEMGINIKVETNGASGIKNR
                     LTQEDIERATGVIVAADVHVETNRFNGKNVVQVPVADGIKRPESLINTALDTTRRPFV
                     ADNRQSTNDEDEKLSVGKAIYKHLMNGVSNMLPLVIAGGILMAIVFMIGPNAMDPKSS
                     EYNAFAETLWNIGNKSAFALIIPILAGYIARSIADKPGFAAGLVGGMLAVSGGSGFLG
                     GIIAGFLAGYLTQGIKKVTQNFPQMLEGLKPTLIYPIVSVTVTGLLMIYVFNTPAAWL
                     NNALISGLNNLSGSNVVILGIVLGAMMAIDMGGPFNKAAYVFSTAALTSGNAAPITAA
                     MVGGMVPPIALAIAMMIFRSKFTKEQRGSIIPNFVMGASFITEGAIPFAAADPLRVIP
                     SMMIGSGVAGGLALLFGSNINAPHGGLVVIIGTDPSHALLTLLAILIGAVVGAVIYGM
                     IKQSPNKA"
     gene            13280..14635
                     /locus_tag="PTC08_000609"
     CDS             13280..14635
                     /locus_tag="PTC08_000609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyC/CorC family transporter"
                     /protein_id="HDK5682139.1"
                     /translation="MDSTTILYLFIFFALIALTTVFVGSEFALVKVRASRVEQLIAEG
                     NGNARVVKKMISNLDYYLSACQLGITVTSLGLGWLGEPLFERILHPVIELLNIPDALV
                     MTVSIVVAFTVVTYIHVVIGELAPKSLAIQYTDRIALLYARPLYYFGLIMKPLIWLMN
                     GSARFIIRIFGADPNAGNEAMSEEELKIIMNNSYHGGEINQTELAYMQNIFSFDERHA
                     KDIMVPRTQMITLNEPFNVDELLETIKEHQFTRYPITEDGDKDHIKGFINVKEFLTEY
                     ASGVPIKISNYIHELPMISETTRISDALVRMQREHVHISLIIDEYGGTAGILTMEDIL
                     EEIVGEIRDEFDDDEVNDIVKLDEQTYQINGRVLLSDLEEMFGIVFEDSEDIDTIGGW
                     LQAQNTDLEQDDFVDTAHDRWVISEIENHQIIHVLLRYEYNDSRIKNEDDEDDYLKDE
                     S"
     gene            15453..16433
                     /locus_tag="PTC08_000610"
     CDS             15453..16433
                     /locus_tag="PTC08_000610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HDK5682140.1"
                     /translation="MKLRVIVPCFNETDVLHQTIQELTEILEKDSLDQSYDYDMLFVD
                     DGSQDDTMTLLQQAAAQSPHVKFISFSRNFGKEAAMIAGFEHSTDCDAVVMIDADLQH
                     PPELIPEMVQAYREGYDQIIAKRNRAGEHASRKWVTRLYYKMINYFIEDIELEDGVGD
                     FRMLSQRAVCSLVSLKEYNRFSKGLFSWIGYNSKVIHYENVEREAGESKWSFRSLLNY
                     AIDGLISFNYKPLRTMIYLGLLIFGVSMIYIIYLFIDTLIHGVDVPGYFTMIAAVLFI
                     GGIQLVSIGVIGEYIGRIYYEVKQRPKYIVEASNVGMPKSHNETQQDVSI"
     gene            complement(16606..16860)
                     /locus_tag="PTC08_000611"
     CDS             complement(16606..16860)
                     /locus_tag="PTC08_000611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016424461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GlsB/YeaQ/YmgE family stress response membrane
                     protein"
                     /protein_id="HDK5682141.1"
                     /translation="MGFIVMLIVGGLIGWAAGAILGKDIPGGIIGNIIAGLVGSAIGS
                     WLLGHWGPEFGGVYILPALIGSIILIALASLILGKMRGKK"
     gene            complement(16930..17529)
                     /locus_tag="PTC08_000612"
     CDS             complement(16930..17529)
                     /locus_tag="PTC08_000612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682142.1"
                     /translation="MALFVILNIIIVVGVFLIDMYRHQYQYVRLSAFLFAITVNSLLN
                     PILLNQLNFITMSSFLMYFIWFILQIYLDRHVRTFKIHNQKFFAGITAMIISILFVVM
                     TQTADQTIYMSVPYLAPAIFLFGAILQFSSVLHSPRFETFYRRLKMENPLFIGACFIV
                     ASMILMMLLTPFWYLYLIIYACLILIFLLEQIFILEKDD"
     gene            complement(17677..18390)
                     /gene="queE"
                     /locus_tag="PTC08_000613"
     CDS             complement(17677..18390)
                     /gene="queE"
                     /locus_tag="PTC08_000613"
                     /EC_number="4.3.99.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002445901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-carboxy-7-deazaguanine synthase QueE"
                     /protein_id="HDK5682143.1"
                     /translation="MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDFRCSWCDSKF
                     TWDGSMKDDIEMMEAEEILAQLRNIGGNRFNHVTISGGNPALIKGLQSFVDLCEANDI
                     RTALETQGSQFKPWMRQINDLTLSPKPPSSGMQQNLPRLDEVIEQLDISRINLKVVVF
                     DDADYDFAKMIHQRYPDIPFYLQVGNPYLEEHVEQHTAKLLDRYEQLIDRVTADAEMN
                     EVFVLPQLHTLIWSNQKGV"
     gene            complement(18383..18814)
                     /gene="queD"
                     /locus_tag="PTC08_000614"
     CDS             complement(18383..18814)
                     /gene="queD"
                     /locus_tag="PTC08_000614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-carboxytetrahydropterin synthase QueD"
                     /protein_id="HDK5682144.1"
                     /translation="MMQQMYPQVDHDYMFELNKDFNFSAAHFIPDERAGKCTRVHGHT
                     YFVNLTIGGDELDSMGFLINFSELKSLIHDQFDHYLLNDLVPFQGKSPSTEIVAQTIY
                     DIVSARLAELPNAPKCLQVFLRETPTSYVIYRPKKKEQRHG"
     gene            complement(18814..19482)
                     /gene="queC"
                     /locus_tag="PTC08_000615"
     CDS             complement(18814..19482)
                     /gene="queC"
                     /locus_tag="PTC08_000615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase QueC"
                     /protein_id="HDK5682145.1"
                     /translation="MSEVLNNEKALVVFSGGQDSTTCLFYAKKHFKEVELVTFEYGQR
                     HAKEIEVAKEIAEDQGLKHHVLDMALLSQLTPNALTSHDMTIDSHNDVPNTFVPARNL
                     LFLSFAGALAYQIGAKHLITGVCETDFSGYPDCRDSFIKSMNVTLNLAMDRDFVIHTP
                     LMWLNKKETWALSDDLGVLDYVRDRTLTCYNGIIAEGCGECPACQLRQRGLNQYLAER
                     GREV"
     gene            19743..20336
                     /locus_tag="PTC08_000616"
     CDS             19743..20336
                     /locus_tag="PTC08_000616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate/anthranilate synthase
                     component II"
                     /protein_id="HDK5682146.1"
                     /translation="MIVMIDNKDSFTYNIVDYVEYERQQPVTVIDVEAVSIEKLKEMQ
                     PTALIISPGPGAPEDYPILFEVVKAFEHTTPILGVCLGFQLLVTYYGGKIIHAPRPVH
                     GHTTRISHDQSPLFQGLPEQFEVMRYHSLMADPMTIVKPLVVSAQNEQGIVMAVRHMS
                     RPIDGVQYHPESILSEYGHEQIRNFLRKAEVSYGCEV"
     gene            20320..21468
                     /locus_tag="PTC08_000617"
     CDS             20320..21468
                     /locus_tag="PTC08_000617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component I family
                     protein"
                     /protein_id="HDK5682147.1"
                     /translation="MVVKFNYKYYNDPNTTTTYQYHFDQPLHQGVARELKKVGQIIEA
                     ATQYQQQGYYVALYLPYEAAPYFHEDFQTYTPDNGIYAAYYAFDAPVDAIQATTAERS
                     QRRQGGQFQFMDDKHTITKHIRTIHDEITAGWTYQVNYTTRLKSFDQMSISALYNQLT
                     QHTNGDYTVLIDTTEVKLASISPELFFQVGDFGNQGRTVVSKPMKGTMPRGTTVEEDE
                     RHAQALRQSEKDRAENVMIVDLLRNDIARVAKRGSVKVYHPFAIERYQTVFQMTTMVT
                     GQITDTATYETLLHALFPCGSITGAPKVNTMRIIHRLETTPRHIYCGAIGLLHPNGRA
                     IFNVPIRTVEQINDTLYYGVGAGITIDSDPEQEYAEFHAKMKILEGLQ"
     gene            21465..22091
                     /locus_tag="PTC08_000618"
     CDS             21465..22091
                     /locus_tag="PTC08_000618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class IV"
                     /protein_id="HDK5682148.1"
                     /translation="MNLFETMRLDNGEIPRLAYHAERLQRASTALGLPFDDIKWQQTI
                     QQLCETYALGQYRVKVTLEPSGELRTEVGTLQKKTTMTAQFVPMKNDIPEWQRVYKTS
                     EREHVAHSHTTQLALFYDETTNKVLEFDIGNVVLTVNGIHYTPIFDRDFLQGCMRRDL
                     LAEARIKEKYLTTVMVKEALQHGGQLWMINSLREWVLITLESKKQVIV"
     gene            22088..22297
                     /locus_tag="PTC08_000619"
     CDS             22088..22297
                     /locus_tag="PTC08_000619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682149.1"
                     /translation="MIGLYILGFLIVMWIGQIVSQRFVARQRRLWVYLWMGGILIIQC
                     MLIYGFVGELAQHMREILSLFYDEK"
     gene            22308..22991
                     /locus_tag="PTC08_000620"
     CDS             22308..22991
                     /locus_tag="PTC08_000620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="allophanate hydrolase subunit 1"
                     /protein_id="HDK5682150.1"
                     /translation="MKVYSQGDQAIVVSLQGDVTPAATEKLLLIRHCLINQNYPFITE
                     IVPTETDMLISYDARMMMKHLNIDSPFLHMKAVIENINIEDMTLDKEIRCVKVPIVYG
                     GTNGPHLDMILKELHMDRQTFIDIHTGADYFVSMMGYSPGFPYLSGVDAQIIVNHTAT
                     EPRLIPAGSVILENNKCGITTTETYSDWLVIGHTSLPLFNPKKEDFALISLGDHVKFF
                     EVQAGGNDA"
     gene            22988..23992
                     /locus_tag="PTC08_000621"
     CDS             22988..23992
                     /locus_tag="PTC08_000621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin-dependent carboxyltransferase family
                     protein"
                     /protein_id="HDK5682151.1"
                     /translation="MTIIIEDSGLFSSFQDFGREGYEHMGVIRSGALDVLAHEIANRL
                     VGNDRNEATLEMSNQMARIRFTEPTLIALSGAQGVAHTDDMRVQMNKLYLMNKGDVLA
                     VDHLRRGSRLYLAVAGGFELDQWLGSTSTDTIAGMGGFKGRLLQAGDTIELKRDYNAR
                     HHQLFKNLAQRKTVDWGVDGYALSFNYLSDVVHVIPNKGTEDFEAEVLRQFANGEYEV
                     TSKANRMGVVLEGMPIKAHYDDMPPHQSVKRGTIQVKKEGAPVILLNDHYTLGSYPQI
                     GTIASYHLSKIAQKRQGSKIKFQFIDVLQAEQNLVKYHKWRKQLFQVIEFRMQKEMLK
                     "
BASE COUNT         7627 a         4224 c         5246 g         7083 t
ORIGIN      
        1 aacagttatt gaacatttta aatgcaatta ataacgaaaa tgaagaagta atgaatacaa
       61 gtgaagcaga gctgaaaact gatgtttata agttgaattt agtgtataaa aagtataata
      121 aagaaggcga tagaatagga agccaacgta tttttttcaa tcatgagtct gaggggacga
      181 aaaaattgat tactttggca ttgaatatac tagacgaaac taaaagggga agcgtttttg
      241 tgatggatga atttgatgat tctctacact taaatatttc gaaaattatg attaaactgt
      301 ttaatctaat ggagaacagg agtcaattta ttttgacttc gcatcagctg tttttactag
      361 attgcgattt acgcgtggat caaatttatt tagctaagaa agacttcgaa ggtgctagtg
      421 aattgtacag tatatttgat tttaatgatg actatggtaa aaggtcagat ttaacaattt
      481 ttaaacgcta tttggaaggt gtctatggtg cggtccctaa tgtaacgata aatgatttta
      541 caactttgat tggcaaaaag catcatgtgg atggtggtga ggatgagtaa aaacaaaaga
      601 cgaggaagat aaaaaaggca aaacaccaaa caaaatagtt aaaatatact gtgagggtta
      661 cactgaaaaa cactatgttg acatgttaag gaaaaagcat agcaagtcta atatcagtgt
      721 gagtgttgaa gcggtttctc aaagtcataa agcattggtc aaaatcctta tacgaatatc
      781 cgccatgatt taaaagttat ttttaatatt acaaagcgtt tataagttag tcataaacca
      841 tcccccttat gtcatcttct ataatgattt attagcgttt gtcacaaaga ttacatgtaa
      901 taatgtgaat agtgttatac atttataaaa atgcaatgat ataataaaag tgatgaaaga
      961 caagggggtt ttggaatatg agacgaaaaa aagtttcaat tattggatca ggtcacacgg
     1021 gtgcaacact tgcatttatt gttgcttctc atggcaatgc ggatgtgttg attgttgacc
     1081 gtgaaaagaa cgcgtcagtg atgaaaggga aaacattaga catgcaacaa agtggctcaa
     1141 ttttgggatt taatgtgcat gtgaattcta ctgtcgacta tgcggatacg aaagattcgg
     1201 atgttgttgt cattacggca ggggtcccac gtcaacctgg tatgagtcgt gatgatttag
     1261 tccaaacgaa tgaacaagtc atggttgaag tgacgaagaa aattgtgcaa tattcacctc
     1321 actgtacgat tatcgtctta acgaacccag ttgatgcgat gacgtatacc gtttatcgta
     1381 cgtcaggttt tccgagtgaa cgtgtcattg gacaatcggg tgtgttagat actgcgagat
     1441 ttaatacatt tgttgcagaa gctttagatg ttgcagtgaa tgatgtgaca ggattagtgt
     1501 tgggcggaca tggggatacg atggtgccgt tagtgcgtca tagccaagtg aatggcgtgc
     1561 cacttaatga actgttacca ccagaaaaaa tagaagaaat tgttgaaaga acacgtaaag
     1621 gtggcgcaga aattgtccaa ctgttaggca cgggttcagc ttattatgca ccggcagcgg
     1681 cagtttatga aatgttgatt gcgattttag aagatcaaaa acgtgtatta ccaacgatcg
     1741 cttattgcca aggggagtat cagttggatg atatttatat cggcgtgcca actgttttag
     1801 gtgcaaatgg tgtcgaacgt attattgaat tagagttaac ggatgaagaa aaagcgcagt
     1861 tgaaacgttc agctgaagcg gtcgaaggtg taaaggcagc gctgaaaagt ttataaacca
     1921 gttgatgatt gaactggcgt cccttttacc ggtccaacac tgaatcgagc tgtaacgatt
     1981 catgtattca atttcgtata taaaaataac ccccacgtcg tttgattgta cgtgggggtt
     2041 taagtattat gaaaaaattt ggaaaaggac gccgataaaa gcaagtgtat tattaaacat
     2101 atgcaagaaa atagacacag caatgttaca accactttta atgtaagcaa cgacgaacat
     2161 cgttgctaga aaaatatacg gtaccgcttc aagtggatgg tgtgcggcaa acatatgcaa
     2221 acttgcaaaa ataacgatag aaatcagacc tgtaaacatg aggccccatt ttttgccgag
     2281 ctcgccaata atgatatgac ggaaaagcaa ttcctcggtg atcggtgtca aaatggctaa
     2341 acttaaaaat acgagtggta accaagccgg ttgatggaaa aaggccatga gtgcttcttg
     2401 gttgcctgtt tctttaaatt gccattgttc aggtaacaac tgtaatacat aagtgaaaat
     2461 catattcgca atcatataga gcacatacac actgatcatc agcttaatat gctttctact
     2521 ttgcatcaat gcgacggtta tcttagtttt taagccgtga cgatgcgacc atgccaaata
     2581 aataatgaca aagatggacg tgagtatacc gacaattaac agtgccattg cgaccggtat
     2641 ttgtgttgat gggattaaga atagactgaa cacattgccc agaatgattt gtgctaaaaa
     2701 atagatgact atcgcccata aatcacgcca ggcgacttgc tttgaagaca tatgcatcat
     2761 tttcctccta ggtactttgc ttctacagtt attaaatgcc aaacagcaat aaatataagc
     2821 ttacaaattg aagacatgta agaatataac tgtattttag caataatttc actttaaagg
     2881 gaagttgcca gtttggataa tgtcgttcgt aatacaacag ttgaattccg aatacagcaa
     2941 tgcccatagg tagtaacagc atgacgaggg gccaccattt gcgccagccg atttgatagt
     3001 aaaatagagt gatcagaagt tgaaaggccg gtatcgcact gataaatata actgttgaaa
     3061 tcatgtacgg cttcgaactc ctttcacaaa taaaaatagt aaagcttgaa ttaatatgat
     3121 aaatgacaca aaaataagtg cctcaagatt cagtgatttt aatgttgaga cgatgacgga
     3181 aaatgggtga ttaataatat gcacgctatg aaaacgtaaa aagcgaccta cataaatgcc
     3241 gagtccactc aaaaccatca tgccgaacaa agcaacgata cgtaatggag taacttgaat
     3301 gaggtgataa atttccatca caattaacac ataacaataa agtgagaaga tgactgatga
     3361 gatgagtaat gtgaaatgga accactcata taaattgagt tcagccaaaa agttaaatgt
     3421 aaattgattc aaatggatta aatctgtcac catataaaat gtgtttggta acattaatat
     3481 aaagataaat aagtatatga taaaaagcgg ccattcaaat gcacgcctcg gtataaaaag
     3541 tttgatcaaa taggccaatt ctaatggaat ataagctaaa gatacattga gtgttaaaaa
     3601 cattaattga ttgggaataa gtattgaaat aagaattaat accacatagg tgatacgtgc
     3661 aatgtatcgg gcattcatcg tgatacctcc ttctatgaga tatatagcat aaccgttaat
     3721 ttcgatggtt tcaaattttt cactgtcttt taaataggaa tcagtctcga gttgtagaga
     3781 tgacagtgaa agtgaaggga agcggaatct ttacatcacg tgcacaggct ccctttagat
     3841 gataataagc tataaaattt ttgtttataa tatacaaaag gtttgatgtt ctttatttca
     3901 aaaactttta attttagtgt ttcgaaactt tcttttgtaa aacaaatgtt atataatgtt
     3961 gtaatatttt gaatgaagcg gaaggagtag cgcatttgaa aaaacaattc atcattttat
     4021 atttgaatat tttcttagtc tttttaggaa tcgggctcat tattcctgtg ctaccggtct
     4081 atttaaaaga tttaggactc accggggcag acttgggtgt actcgttgca gtatttgcgc
     4141 tcgctcaaat gttgatttca ccttttggcg ggactttggc agaccgatta ggcaaaaaac
     4201 tcattatttg tattggctta gttttattta gtatttcgga gtttttattt gcgtggagcc
     4261 atactttttc gttacttatc gtgtcacgtg tacttggggg ctttagtgct gggatggtca
     4321 tgccaggggt gacaggtttg attgcggatc tctctccacc aaaagataaa gcgcgcaatt
     4381 ttggttacat gtcagccatc atttcagcgg gttttatttt agggccgggg ataggtggtt
     4441 tcttggcaga gatttcacat cgtttaccct ttgtttttgc tggtgtgctc ggcgttttgg
     4501 cttttatttg tactttgctc ttcatccagt caccgaaacg tgcaacgaca caagggtttg
     4561 cacagtttga tagtacggaa tttggcaaaa taaattacaa agcttttatt acacccgcca
     4621 ttttaacatt aattttagcg tttggcttat ctgcatttga gacgttattt ccattgtata
     4681 cggcggacaa aatggatttt acaccaggtg acatttcaat tgcgattaca ggtggcggta
     4741 tttttggtgc catcttccaa gtgttcttat ttgataaaat gatacgtcgc atgagtgagc
     4801 tcgtgtttat tatatacgct ttaatctatt cggcgtttgt ccttatgctt ttaatttttg
     4861 cacatagcta ttggcaagtg atgttgatct gtttcatcgt gtttatcggt tttgacttaa
     4921 ttcgccctgc attaacgaat tatttctcaa atattgcggg gaatcgtcaa ggctttgctg
     4981 gtggacttaa ttcaacattt acgagtatgg ggaatttcat tgggccgctc attgctggtg
     5041 gtttatatga tgttaatatt gaatatccat tatacatgtc gattatgttc atgctcctcg
     5101 gctgtattgt gattttgatt gaaaaacagt tgcgacgtca tcaaaatttg aaacagtctt
     5161 agagatggga attaaaaata atttgaaaca gcagatatct cacatggcac gtcattacga
     5221 cattggcgtc atgcgataat ctgctgtttt catgttataa tgtgggaaat tgaattgaag
     5281 aagtaggagc gaatacgtga tgcacattaa aatattaggc tataacattt ttcaaaaagg
     5341 tggcacaacg cgaagtaacc tcaatttaat ccaaagtttt ctgcgtgcag gtcatcaagt
     5401 gacatatgtc aattatatgc attttcgtca gcgtcaagtg agtcaattga aagctgaaga
     5461 agggcaagcg attgaaggcg cgcagtttat cgcatttcgc ggggcacaga cgttagctca
     5521 ggcagactta ctcattttaa cacgcgagga ctttttcgaa tttgcgcgag aagtgaaaca
     5581 tcgtacatcg gaaatgcgca ttttaggtga aattcacagt ccgttagcgt acctgaaccc
     5641 acaaatggat ctggcattgg aagcgattga tgcagtgcgt gtcagtacgc caaaaattgc
     5701 agaagcattt caagagcgct atgactatcc gtatgtcttt ccgatgtatg tgaaccatca
     5761 gcacgtgcaa tttcaaacgc aacctgtcca ccaaacgcac aatttattaa tgaaagcccg
     5821 ttttgaagat gaaattaaag acatttcgta tgtgttaaag ttgatgcgtt attttgtgta
     5881 tacacaaggc gaaacgcgca ttcatcttta tttacaagga tatggaccat cactggaact
     5941 gtacgaaaat cttgtcgttg cgtatcattt agaagattat gtccatatta acgggtcaga
     6001 gccgacagat tatatttacg tgtccacgtc accgtatgaa acgtttggtt attcgatatt
     6061 agaagcaatg gcacaaggca atcgtgtgtg tctttatcca ggcgaggatg gtgtgttgaa
     6121 agatatttat gcgccgtttc atgcagtcac ttggattaca aaatcattag aaagtgatgc
     6181 tgcaaaaatt gtagagatgg ttaatggtaa gtatacagat acggaacgtg aagcggatgt
     6241 cgagactttc catacacaac ttgcgcaagg tcacgataca gaggcattga ttgctcaaac
     6301 aatggctatg gcagcagcgc atacgattga tgtgtcacaa attgccaaac cgaaaatgaa
     6361 agcaagttat cgatatgtcc aaaacacggc gaaacgtgtc gtagtaaaag tgaaagagac
     6421 agcagaacaa gcaccgaaaa gtccgttccg taaagggtcg cgtttgtatc agttcacgcg
     6481 taaagggctc tttaacgttg aagcacaagt gaaaaagttt caaaatcaac gtcgtcacgt
     6541 atctggtcag gcggtgttta tcgaatcgtt tcatggtaaa aacttttcag gtgatccgaa
     6601 agccattgca tgtgcgatga agcgattata tccggagctt acgatttatg tgagcgcggc
     6661 agatccgtta gtggaaatgg aaattcgtag ctatgatatg acacctatac gctttggcac
     6721 acgtgcttac atgcgtgctt ttgaacgatg tcgttatgcg gtcattaacg gaaatttgtg
     6781 ggatagactg gtgaaacatc ctgaccaaca agtgattcaa acgtggcacg gctttccgct
     6841 taaacggatg gtgaatgatt tagtggatgc tgttgaacgt caaaaacaag cgcaacaatt
     6901 tgcaccacgt atgcagaaat ggaatgtctt gttatccact tcagaacgct acgaaactta
     6961 tattcgctcg gcatttcgac ttgatactca tccgaattta acgattttac gtcacggtgc
     7021 gccacggaac agtttgttaa ttcgccatca aaacgatgaa gcgaaatggt tggaaattca
     7081 agaaaagtat ttcttccaac gagatgcgac taaaaagtac attttattct gtccgacttg
     7141 gcgtaaaaat gcgcgacaat cagtatcaga attagatatt gtcgcattgt tggaacgtct
     7201 cccgtcatct tatgaaatga ttgtgaaatt gcatccgaat gaagggcatt tgcgtgaact
     7261 ttatcaaaat ttgcatccgc gtgtccattg cttttttaat gaaatggtag acatccaaga
     7321 gttatattta atatcagatg tactgatttc agattattcg tcagcaatgt ttgattatgc
     7381 gcatttaaat cgtcctattt taattcttga tgaagataca gtagattatc aacaagatgt
     7441 cggcttttac tttgatatga cggaatttcc aagtattcaa aaagtcacac cagatgttga
     7501 aaaaattcag caatacattg aaacaacatc atctgttgat catcaaaaag tcattgcaca
     7561 attaatgaca tatgaccaaa gtgattcaga tgaacaagtt gtgcggtcga tagttgcgcg
     7621 ataaatgata gaaagaaggt aggatcatgg cgaaacaaaa gaaaacaaat gcgatgcgtc
     7681 aattggatag agcgaaagtg aactatgaga ttcgaacgtt tgaagtgggt gagggacatc
     7741 ttgaaggtca tgaagttgcg gcgctgatta acgcgaatag tgcagaagtg tacaaaacgc
     7801 tcgttcttga aaatgccaac catgagcatt ttgtcttcgt tattccagtg acagcacatt
     7861 tagatatgaa agcagcagcg gcggcagttc atgaaaagaa attgcacttg atgccgctcg
     7921 acgatttgaa aaaagtgaca ggctatatac gtggaggttg ctcaccgatt ggaatgaaga
     7981 cccattttcc gacagtcatt aatggtacga tagagctgct cgacagggtc tttgtgagtg
     8041 cgggacagcg cggcgtacaa atgggcttag cgccgcatga tttaattgag atgagtcatg
     8101 ctgaagtgaa gcaggtcatt cagtaatttg aaaaaggcgt gatactttgg aacatttgcc
     8161 atatacaaca aatgtctgac attgatatag gccccgggac tcatgtatac aatgcgattc
     8221 atgagctatt ataagggggt agcgaagtta aaaaatgcca aaaatggagt tgtatatgat
     8281 gaaagtcagg gattattttg aacgagttaa agagaatttg ttagatatga agataggttc
     8341 gaaaagtttt gtgattatga ttgtgtcaat ggtgttgttg agtacgattt tcacaccatt
     8401 tatcggcatt ccagctggtg cagtcattgg ttcttacgct tacgaacgtt actaaatatt
     8461 aatataaaaa agaaagcgtg atgcgacggg aaaaagtcgg tcacgcttct tttttgagtt
     8521 tgtatagcac ataaatgtca atgacaataa aagtccagaa aacgagcaaa ctactaatac
     8581 ttaatacgag tgcagtattc gattcttttg tcatgatatt aaaaatgtct agaacgacaa
     8641 aagcgataga aatgattaaa gaaatgattg ccgccgtcag tcgttctttt ctatttttta
     8701 gcatctttcc atccccctta cacctcatat gtattgacta caagtttaac aaaaattcgg
     8761 aatcaaatcg attgaataac gagggacgat gatactgtcc cccagctaaa ctattcaatg
     8821 gtggtcactg ttgaatcgct ttttaatcgt atagaaaaga tatgtagcac ctagtgcaca
     8881 tagtacgaca atgatgatat tgataatcca ttgccaccaa tgttctaaag gaagataaga
     8941 aaagagtgcg aagaaaggaa cgacaaaaat caaatctaaa atgctgatac ctgtcagtgc
     9001 ttcatcaagg tgattctttt tcaaatctgt cacgctcctt tttgaatcgt tcattgacta
     9061 gatattctat ttaactatat catagcacga cgacataacg attcatattg atttccatgc
     9121 gctaaacgaa gacaaaaatg aaaaaagtca atgtgctttt ggttgaatgt gactgatttt
     9181 tgtaattatt cacgcgtatg tgacttattt tgaaagattg tgaatgaaaa tggttgatta
     9241 atgaaaacgg atacactata atgtaactga attggggtga taaagttgtt aacggaaaaa
     9301 agacatgaac tcatacttac tgcattagac caacatcaat tcctatcatt acaacattta
     9361 atggaattta cgggctccag tgcttccaca attcgacgtg acttatcgaa actccaagac
     9421 gatggcaagt tgacacgtgt gcacgggggt gcaaagttaa ttagcgaaca aaaggaacct
     9481 gaacttcatg agaaacgcac tcagcatatt gatgaaaagg tggaaattgc gaaaagagcg
     9541 gcacaactgg tgaatgatgg tgattgtgtg tatttggatg ccggttctac aactttagaa
     9601 atgattcctt ttttaacggc gaaagacata acggtgatta caaacgggtt accacatgtt
     9661 gaagcgttat tgaaaaaggg aattgcaact aaaattatcg gtggcgatgt gaaggcgaac
     9721 actttggcgg tagtcggtag tcgtgcagtc tcgttcttac aacattatcg ctttaacaaa
     9781 gtatttctag gtgtgaatgg tatcgactgt gaagccgggc tcacgacacc ggatgagcga
     9841 gaggcgattg tgaaagagac agcgatgcaa cacgcacaac aagtgtatat acttgcggat
     9901 acgtcaaagt tcaatcagca atatttagcc gcgattcacg cgacagagca accgatttta
     9961 attacttcag aaaaagcacg tcatatgcgt cattttgata tttatgacaa tcattttgaa
    10021 atattaggag gcaaatgatg atttatacag tgacattcaa tccatctatt gattatgtca
    10081 tgtttgtaga tgattttgct gcgggtgcgt tgaatcgtac gacggccatt gcgaaatttg
    10141 cgggggggaa agggatcaac gtttctcgcg tcttacaaac attacaagtt ccttcaacag
    10201 ctttaggatt tatcggtggc tttccaggtc aatttatcga aaacacttta aaagaagaag
    10261 gaattcatac ggcatttaca caagttgatg aagatacacg tattaatgtg aagttgaaga
    10321 gtcaaactga gacagagatt aacgcggctg gaccgcacat taccgaaacc caagtagcga
    10381 ctttattcga acaactttat gtgacaacgg ctgaggatat cgttgttgtc gccggaagtg
    10441 tgcctgcaag tctgccggac accatttata tcgatattgc aaagatcgca caacaaacag
    10501 gcgcaaaact tgtcgttgat gctgagaaat ctttaatcga agggatttta ccgtattatc
    10561 ctttatttat taaaccaaat cagcacgaac ttgaagcaat gtttaacacg aagatagaga
    10621 cagaccaaga cgtgttaacg tatgcccgcc gtttagttga taaaggggca caatccgtca
    10681 tcgtatcact cggtggtgct ggtgcaattt atgcggatcg agaagtggca tacaaaattc
    10741 aagcaccaca aggtcaagtt gtcaatacag tcggtgctgg tgatagtaca gtagccggaa
    10801 tggtggcagg aatttctcaa aacctcgcgt tacctgaggc actcaaatta gccgttgcat
    10861 caggttctgc gacagccttt aacgatgatt tagcacaata tgacatgatt caagaactcc
    10921 aagcacatgt gacgattcaa ccacttaatg aggaggggta acatgagaat tactgagtta
    10981 ctcacaaaag aaacaatcgc aatggatctt tcagcgacta cgaaagatgg tgtcattgac
    11041 gaactcgcac aacaattaaa tcaagcagga aaattaaatc aattagatga ctatatcgca
    11101 gcgatccaca aacgagaaca acaaagttca acaggtattg gtgaggggat tgcgattcca
    11161 catgcgaaag tagaagcggt caaaacacca gcgatcgcat tcggtaagtc taaagcaggt
    11221 gttgactatg acagcttaga catgcaaccg gcacatttat tctttatgat tgcagcaccg
    11281 gcaactgggg cacaaacgca tttagatgct ttagccaaat tatcgagtgt tttaatggat
    11341 gaaaatgtac gtcaagcttt attagaagca gattcacctg aagctgtgct cgcaattatt
    11401 aataaagcag atgatgaagc gacagatgat gacacagaag caacggctga acctgcacct
    11461 gtagatcatg atgaacctta tattcttgcg gtgacagctt gcacaacagg tattgcacat
    11521 acgtatatgg cacgggatgc tttgaaaaaa caagctgaag aaatgggtat taacattaaa
    11581 gtcgaaacaa acggcgctag tggcattaaa aatagattaa cgcaagaaga tatcgaacgt
    11641 gcgacaggtg tgattgttgc ggcggacgtt cacgttgaaa ccaatcgttt taatggtaaa
    11701 aacgtggttc aagttcctgt agctgatggg atcaaacgcc cagaatcatt aattaacaca
    11761 gcattagata caacgcgtag accattcgta gctgacaatc gtcaaagcac aaatgacgaa
    11821 gatgaaaaac taagtgtcgg taaagcgatt tacaaacact tgatgaacgg tgtatcaaat
    11881 atgttgccgc ttgttattgc gggtggtatt ttaatggcga ttgtatttat gattgggcca
    11941 aatgcgatgg atccgaaaag ttctgaatac aatgcatttg ctgaaacgtt atggaacatc
    12001 gggaataaga gtgcatttgc gttaattatt cctattttag cgggttacat tgcacgtagt
    12061 attgctgaca aaccaggttt tgctgccggt cttgtaggcg gtatgcttgc agtctctggt
    12121 ggctcgggat ttttaggagg gattatcgct ggtttcttag caggttattt aacacaaggg
    12181 attaagaaag taacgcaaaa cttcccgcaa atgttagaag ggcttaaacc aacattgatt
    12241 tacccgatcg tttctgttac tgtcacaggc ttattgatga tttacgtatt caatacacct
    12301 gctgcatggt taaataatgc tttaatttca ggattgaata acttatcagg tagcaatgtg
    12361 gtcattctcg gtatcgtact cggtgcaatg atggcgattg acatgggtgg tccgtttaac
    12421 aaagcagctt acgttttcag tactgcagcg ttaacatcag gtaatgcagc accaattaca
    12481 gcagcaatgg ttggtggtat ggtacctcca attgcacttg cgatagcgat gatgattttc
    12541 cgttctaagt ttactaaaga acaacgcggt tcaatcattc ctaactttgt gatgggcgca
    12601 agctttataa ctgaaggggc tattccattc gcggcagcag acccattacg tgtcattccg
    12661 tcaatgatga ttggttctgg tgttgctggt ggacttgcgt tactattcgg ttccaatatt
    12721 aacgcgccac acggtggttt agtcgtgatt attggtacag atccaagtca cgcattactc
    12781 acactgcttg ccatcttaat tggtgcggtt gtcggtgcag tgatttacgg tatgattaaa
    12841 caatcaccca ataaagcgta gacatttttg aagagacaca ggcatgtttt taaatcatgc
    12901 gtgtgtcttt tttaatgttt gggaaaagtt tgagaattaa gatgttagaa atagtctatc
    12961 cactttaaaa tgcgtgcgat gtgctatgta gtctcacgtg ttaaaatgtg gtgtgtacaa
    13021 taaaagaagt caatcaaagt gaaataacgg taaatcgtaa tctgaacaaa atgggtctca
    13081 agtctcacac gttcatagta taatttcact caaagatatg atatgataaa attaatattt
    13141 ttgtgtctgg aggttgctca atgggaagga tttaggaaat gtgaatatga cttgtcgcta
    13201 tagccaaatc aatacaacgt tgctttctat tgggcgatgt caattaacgg aggtgaatcc
    13261 ctatctaata gggaactaat tggatagtac gaccatatta tacttattta tattttttgc
    13321 attaattgct ttaactacag tctttgtagg ttctgaattt gcattagtaa aggtgagagc
    13381 ttcacgtgtg gaacaactca ttgctgaggg aaatgggaat gcacgtgtcg tgaaaaaaat
    13441 gatttcaaat ttagattatt atttatcagc ctgtcaatta ggaattacag tgacttcact
    13501 tggtttaggt tggttaggtg aacctttatt tgaaaggatt ttacacccgg tcatcgaact
    13561 gctgaatatc ccggatgcgc tagtgatgac ggtatctatc gtcgtggcgt ttactgtcgt
    13621 gacatacatt catgtcgtga taggtgagtt ggcgccgaaa agtttagcga ttcaatatac
    13681 agaccgtatc gcattacttt atgcaagacc gctgtactat ttcggattga ttatgaagcc
    13741 gctcatctgg ttaatgaatg gttctgcgcg ctttattatt cgaatttttg gtgcagatcc
    13801 aaatgcaggt aatgaagcga tgtcagaaga agagctcaaa atcattatga ataacagcta
    13861 tcatggtggt gaaatcaacc aaactgagct cgcatatatg caaaatattt tttcgtttga
    13921 cgaacgccac gcgaaagata ttatggtgcc gcgtacgcaa atgattacac tgaacgaacc
    13981 ttttaatgtt gatgagttgc tagagacgat taaagaacat caatttacac gttatcctat
    14041 tacggaagac ggcgataaag accacattaa aggttttata aacgtaaaag aatttttaac
    14101 ggaatacgca tcaggtgtac cgattaaaat cagtaactat attcacgaat tgccaatgat
    14161 ttcagaaacg acacgtatta gtgatgcgct tgtacgtatg caacgcgaac atgtacacat
    14221 cagtttaatt attgatgaat acggtggcac agctgggatt ttaacgatgg aagatatttt
    14281 agaggaaatc gtcggtgaaa ttcgagatga gtttgacgat gatgaagtga acgatatcgt
    14341 gaagttagat gagcaaacat accaaattaa tggacgtgta ttacttagtg atttagaaga
    14401 aatgttcggc attgtctttg aagattcaga agacattgat acgattggcg gttggcttca
    14461 agcgcaaaac accgatcttg aacaagatga ttttgtcgat acggcacatg atcgttgggt
    14521 gatttctgaa attgaaaacc atcaaattat ccatgtgcta ttgcgttatg aatacaatga
    14581 ctcacgcata aaaaatgaag atgacgagga tgattattta aaagatgaat cctaaatgag
    14641 gatgggacat aaaaactttt aatgcgattg atgcaatatt ttgttaaact tgccctccct
    14701 acgattttcg gtttttgatt gccttcatga cttcgcgttc ctaggggctg gcccttcaac
    14761 tcaattcggc ttgattgaag tgtacactag atggatgccg aattggattt tgagagcagt
    14821 acaggaatct catgtgtaac aaagatttcg tcgtactgcc cccgcaaggc tgactagact
    14881 tctcaaaagc atgtgcattg agaagtcaga tagctactgc gttaaacggt agcccctttt
    14941 aaagttaaat gacgttgttt agcctttaac ttatccctta ggagtctcag tcttctgggt
    15001 aatcttgcat caaatacagt caattagggc aagtttatga aaaaagataa tctatagcat
    15061 tcaattttta cgtctaattt atcctcattt tgcgacgctg ttatcatcag taatggatat
    15121 aagttcacca ataggatagg aaatgggaaa actcaatgtc cgtctcattt cttaaagtgt
    15181 aaaggaaagt tagagatgca ttggaatacc attctagcta taattaaatg agtcatcgca
    15241 agtgtgtcag agcaatcgga gacatgtgca caagtaactg aacagcattg tatgaaattg
    15301 tttctatgta gagcggacat acgaaatcta atttgaacgt tagacttcta tgccgctttt
    15361 ttattttgaa agcaaaagtt atgtttttcc tgcaaagggg tagaaacaaa ggatagtaga
    15421 tagaaaaaaa gctaatggag taggtgcaca aaatgaaatt acgtgtgatt gtcccgtgtt
    15481 ttaatgaaac ggacgtctta catcaaacga ttcaagaatt aacagaaatt ctagaaaaag
    15541 atagcctcga ccaatcttat gattacgaca tgttgtttgt tgatgatggg agtcaagatg
    15601 atacaatgac gcttctccaa caggcagccg cacagtcacc ccatgtgaag tttatttcat
    15661 ttagtcgaaa ttttgggaaa gaggctgcga tgattgcggg atttgaacat agtacggatt
    15721 gcgatgcggt cgtgatgatt gacgccgatt tacaacatcc gcctgagtta atacctgaaa
    15781 tggtccaagc gtatcgtgaa ggttatgatc aaattattgc caaacgtaat cgcgctggtg
    15841 agcatgcatc gcgcaaatgg gtaacccgtt tatattacaa aatgattaat tatttcattg
    15901 aggatataga gttagaagat ggtgtcggtg attttagaat gttaagtcag cgtgccgtct
    15961 gttcgcttgt cagcttgaaa gagtacaacc gtttctcaaa aggactcttt tcatggatcg
    16021 gttataacag taaggtcatt cattatgaaa atgtcgagcg tgaagcgggt gagtcgaaat
    16081 ggtcatttag aagcttgctc aattatgcga tagacggttt aatttctttt aattataagc
    16141 cacttcgcac aatgatttat ttaggcttac tcatttttgg cgtcagtatg atttatatta
    16201 tttatctctt tattgataca ctcattcacg gtgttgatgt ccctggttac tttacgatga
    16261 ttgcggctgt gttatttatc ggtggcatcc aactcgtttc aattggtgtg attggtgaat
    16321 atataggacg tatttattat gaagtaaaac aacggccgaa gtatattgta gaagcatcga
    16381 atgtaggcat gccaaaaagt cataatgaaa cgcaacaaga cgtgtcgatt taaggagaac
    16441 gtggtgaatg taacaacgtt ttttatttaa tgatgtcgtc tatttgactt ttatgtgcaa
    16501 taaaagcgat acaaaaaagg tgtagatgat tgaagtcttt gaaagaagat ttcatcatct
    16561 acacctttat attgtattta tcacagtatg tttagacgga tgagtctatt ttttaccacg
    16621 cattttgcct aaaattaatg aagctaatgc gattaaaata attgatccga ttaatgctgg
    16681 taaaatgtat acgccaccga attctggacc ccaatgacct aataaccagc taccaatcgc
    16741 agaaccaact aaacctgcga taatatttcc gataatacca cctggaatat ctttacctaa
    16801 aattgcacca gcagcccaac caatgagacc gccgacaatt aacatcacta taaaacccat
    16861 agtaaatgcc tcctttattt tctaaactat attaaggctc aattaataca taccacgttc
    16921 aacttgtttt taatcatctt tttctaaaat aaatatttgt tctaacaaaa agatgaggat
    16981 gaggcacgcg taaatgatga gatataagta ccaaaaaggc gtcaatagca tcatcagtat
    17041 catggacgca acaataaagc aggcacctat gaataatggg ttttccattt tcaaacggcg
    17101 ataaaaagtt tcaaaccgtg gtgaatgtaa cacgctagaa aattgtaaga tggcaccgaa
    17161 taaaaagata gcaggtgcta agtatggcac agacatataa attgtttgat ctgccgtttg
    17221 tgtcatcaca acgaataata tgctaataat catagcagta ataccagcga aaaatttttg
    17281 gttgtgaatt ttaaaagtac gcacatggcg atctaaataa atttgtaaga tgaaccaaat
    17341 gaaatacatt aaaaagctac tcatcgtaat aaaattcagc tggtttaata aaataggatt
    17401 tagtaaacta ttcactgtta tcgcaaataa gaaagcactt aaacgcacat attggtattg
    17461 atgtcgatac atatcaataa gaaatacgcc aacgacgata atgatattta agatgacaaa
    17521 taaggccatg gtgttctcct aacttttcgc aattcattat actattatat caatatcact
    17581 gtgtataagc atttaataac acttttaacg aaataacatt ttgaggcgac cgcgtatcaa
    17641 tgattgaatt cgtgactttc ttaatacgag tgacaactaa acgccttttt gattactcca
    17701 aattaatgtg tgcaattgtg gtaagacgaa cacttcattc atctccgcat ccgctgtaac
    17761 acggtcgatt aactgttcgt aacgatcgag tagtttggct gtatgttgtt cgacatgctc
    17821 ctctaaataa gggttgccca cttgtaagta gaacggaata tctggataac gttggtgaat
    17881 catttttgca aagtcataat ctgcatcatc aaatacgacc acttttaaat tgatacgtga
    17941 gatgtctaat tgttcaatga cttcatctaa acgtggtaaa ttttgttgca taccggaact
    18001 tggtggctta ggtgaaaggg ttaagtcatt gatttgacgc atccaaggct tgaactgtga
    18061 tccttgtgtt tcaagtgctg tacggatgtc attggcttca cataaatcta caaatgactg
    18121 caacccttta attaaagcag gattcccgcc agaaattgtg acgtgattaa atcgattgcc
    18181 accgatattt ctcagttgcg ctaaaatctc ttctgcttcc atcatttcaa tgtcatcttt
    18241 catactgcca tcccaagtga actttgaatc gcaccaacta cagcgaaaat cacaaccagc
    18301 tgtacggacg aacatcgttt tacgaccaat tacacggcct tcaccttgaa tggtaggacc
    18361 gaaaatctcg agtacaggta ttttagccat gacgttgctc cttcttttta ggacgataaa
    18421 tgacgtaact tgtaggtgtt tcacgtaaaa aaacttgtaa acatttcggt gcgtttggca
    18481 attctgctaa ccgtgcgctc acaatgtcat aaatcgtttg tgccacaatt tcagtggaag
    18541 gacttttccc ttgaaatggc acgagatcgt tcagtaaata gtggtcgaat tgatcatgaa
    18601 ttaaactttt caattcacta aaattaatta aaaagcccat gctgtctaac tcatctccac
    18661 caattgttaa attgacaaag tacgtatgac cgtgcacacg tgtacatttt cctgcacgtt
    18721 cgtcaggaat gaaatgtgcc gctgaaaagt taaagtcttt attcagttca aacatataat
    18781 catggtcgac ctgtggatac atttgttgca tcattatact tcacgtcctc tctctgcaag
    18841 atattggtta agcccgcgct gacgtaattg acatgccgga cattcgccac aaccttctgc
    18901 gataatgccg ttataacatg ttaatgtccg atcgcgcacg taatcgagta cacctaagtc
    18961 gtcacttaat gcccaagttt cttttttgtt aagccacatg agcggtgtat gtattacaaa
    19021 atcacggtcc atcgctaagt tcaatgtgac attcatcgat ttgataaagc tgtcgcggca
    19081 atcaggatac ccagaaaagt ctgtctcgca tacgcctgta atgagatgtt tggcaccgat
    19141 ttggtacgct aatgcaccgg caaatgagag gaagagtaag tttcgagcag ggacgaacgt
    19201 attcgggacg tcattatggc tgtctatcgt catatcgtgt gatgtgagtg cattcggtgt
    19261 gagttgggaa agtaatgcca tatctaatac atgatgtttg agcccttgat cttcagcgat
    19321 ttcttttgcg acttcgattt ctttcgcatg acgctgaccg tattcaaatg taactagttc
    19381 cacttcttta aaatgttttt tagcataaaa cagacaagtc gtactatctt gtccaccgct
    19441 aaatacaacg agtgcttttt cgttattgag cacttctgac atggttgatc gctcctttaa
    19501 tagagaagct cctaaaataa gacataaaaa aagccgtcac tataaaaaat agacggttac
    19561 aagtgtctag ttttttatag agggttgata gctaggaacc tctgcaattc aattctgttc
    19621 catactgtaa tacatttagt gtcataaatc aagtggtgct ctgctcatta tcacttcaat
    19681 tttgtcaatt aggtcgacat ttgtgataat agaagtatta aagaaagaac gaggcaaaaa
    19741 ctatgatagt gatgatagat aataaagatt cttttacgta taatattgtt gattatgtcg
    19801 aatatgagcg tcaacaacct gtcacggtaa tcgatgtcga agccgtttct attgagaaat
    19861 taaaagagat gcaaccgaca gcgctcatta tttctcctgg acctggtgca ccagaagatt
    19921 atcctatcct atttgaagtc gtgaaagcct ttgaacatac gacaccgatt ttaggtgttt
    19981 gtttagggtt tcaattatta gtaacgtatt acggcggaaa aattatacac gcaccacgac
    20041 ctgtccatgg gcatacaacg cgcatcagtc acgaccaatc accgttattt caaggattac
    20101 ctgagcagtt tgaagtgatg cgttatcatt cgttaatggc tgacccgatg acgattgtga
    20161 aaccactcgt agtgtcagcg caaaacgaac aaggaatcgt gatggcggtg cgtcacatgt
    20221 cacgaccgat agacggggtc caatatcatc ccgaatcgat tttgtctgaa tacggtcatg
    20281 aacaaatacg aaactttttg agaaaagcgg aggtcagcta tggttgtgaa gtttaattat
    20341 aaatattata acgatccaaa tacgaccacg acgtatcaat atcattttga tcaaccgctt
    20401 catcaaggtg ttgcacgaga actgaaaaaa gtcggtcaaa ttattgaagc ggcgacacaa
    20461 tatcaacagc aagggtatta cgtcgcgctt tatttaccat acgaagcggc accgtatttt
    20521 catgaagatt ttcaaacgta cacaccggat aatggcattt atgcagcgta ttatgcgttt
    20581 gatgcgcctg tcgatgcgat acaagccacc acagctgaac gttcgcaacg gcgtcaaggt
    20641 ggacagtttc aatttatgga tgataagcat accattacaa agcatatccg tacgatacat
    20701 gacgaaatta cagcagggtg gacgtatcaa gtgaattata cgacacgtct caaaagtttt
    20761 gatcaaatgt cgatttctgc attgtataac cagttgacgc aacatacgaa tggtgattat
    20821 acagtgctca tcgatacaac agaggtaaag ctcgcttcta tttcaccgga gctctttttc
    20881 caagtaggtg actttggtaa tcaaggtcga acagtcgtga gcaaaccgat gaaagggacg
    20941 atgccacgag ggacgacagt tgaagaagat gaacgtcacg cccaagcatt gcggcagtcc
    21001 gaaaaagatc gtgcggaaaa tgtcatgatt gtcgatttat tgcgtaacga tatagcacgt
    21061 gtggccaaac gaggcagtgt caaagtgtat cacccttttg cgattgaacg ttatcaaacg
    21121 gttttccaaa tgacgacgat ggtcacgggt cagattacag acacggcaac gtatgaaacg
    21181 ttattgcatg cactttttcc gtgcggttcg attacaggag caccaaaagt gaatacaatg
    21241 cgtattattc atcgtcttga aacgacaccg cgtcatattt attgtggggc aatcggtttg
    21301 cttcatccga atgggcgcgc gatttttaat gtaccgatac gaacagtcga acaaatcaat
    21361 gacacgttgt attacggtgt cggggccgga attacgatag attctgatcc ggagcaagaa
    21421 tatgcagaat ttcatgcgaa aatgaaaata ttagagggat tgcaatgaat ttatttgaaa
    21481 cgatgcgatt ggacaatggt gaaataccgc gactagctta tcatgcagaa cgactacaac
    21541 gtgcaagtac ggcgctcggg ttaccatttg acgacataaa atggcaacaa accatccaac
    21601 agttatgcga aacgtatgcg ctgggacagt atcgggtaaa agttacgctt gaaccatcag
    21661 gggaattgcg aacagaagtg gggacactcc aaaaaaagac gacgatgact gcacagtttg
    21721 ttcctatgaa aaacgatatc cctgaatggc aacgggtata caaaacgtct gaacgtgaac
    21781 atgtcgcgca ttcgcatacg acacaactcg ctttgtttta cgatgagacc acgaataaag
    21841 tgcttgaatt tgatattggg aatgtcgtgc ttacagtaaa cggtatacat tatacaccaa
    21901 ttttcgaccg cgatttttta caagggtgta tgcgccgcga tttgttagct gaggcacgta
    21961 ttaaggaaaa gtatttgacg acagtgatgg tgaaggaagc gttgcaacac ggaggacaat
    22021 tgtggatgat taatagtttg cgtgagtggg tgctcattac gctggaatcc aaaaagcagg
    22081 tgattgtatg atcgggctct atattttagg ttttctcatt gtcatgtgga tcggtcaaat
    22141 cgtgtcacaa cggtttgttg cacgtcaacg tcgcttatgg gtctacttat ggatgggagg
    22201 tatccttatc attcagtgca tgcttatcta tggctttgtc ggtgaacttg cacagcatat
    22261 gcgcgaaatt ttaagtttgt tttatgatga aaaatagagg tgaaaaaatg aaagtttata
    22321 gtcaaggaga tcaggcgatt gtcgtatctt tacaaggaga cgtgacacca gccgctactg
    22381 aaaagttgct attgatacgt cattgcttaa tcaatcaaaa ctatccattt attacggaaa
    22441 ttgtgccgac tgaaacggat atgttaattt cttatgatgc acgcatgatg atgaaacatt
    22501 tgaatattga ttcgccattt ttacatatga aagcagtcat tgaaaatatt aatatagagg
    22561 atatgacctt agacaaggaa attcgttgtg tgaaagtccc gattgtctat ggtggcacga
    22621 atggaccgca tttggatatg attttaaaag agttgcatat ggatcgccaa acatttattg
    22681 atatacatac aggtgcagac tatttcgttt cgatgatggg gtactcacca ggttttcctt
    22741 atttatccgg tgtcgacgca caaattattg tcaatcatac cgcaactgaa ccacggttga
    22801 ttccagcagg gtcggtcatt ttagaaaaca ataaatgtgg cattacaacg accgaaacgt
    22861 atagcgactg gcttgtaatc ggtcatacgt cattgccatt attcaatcct aaaaaagagg
    22921 attttgcgtt gatttcatta ggggaccacg tgaagttttt tgaagtacaa gcaggaggga
    22981 acgacgcatg acaatcatca tagaagacag cgggttattt tcaagttttc aagattttgg
    23041 acgcgaaggc tatgaacata tgggggttat tcgtagtggt gctttagatg tgttggcgca
    23101 cgaaattgcg aaccgtttag tcggcaatga ccgcaatgaa gcgacactcg aaatgagcaa
    23161 tcaaatggcg cgtattcgtt ttacagaacc gactttaatc gcattgtctg gtgcacaagg
    23221 tgtcgcacat acagatgaca tgcgtgtaca aatgaataaa ttgtatttaa tgaacaaagg
    23281 agacgtgtta gccgtcgatc atctacgccg tggttcgcgt ttgtatttag cagttgcggg
    23341 tggttttgaa ctcgaccaat ggctcggttc gacgtcgaca gatacgattg caggcatggg
    23401 cggatttaaa ggacgtcttt tacaagcagg tgatacgatt gaactaaaac gcgattataa
    23461 tgcgcgtcat catcagttgt ttaaaaactt ggcacagcgt aagacggtcg attggggtgt
    23521 ggatggttat gccttgtctt tcaactattt atcagacgtc gtacatgtca ttccgaataa
    23581 agggacagaa gattttgaag cggaagtgct ccgtcaattc gcaaatggtg agtatgaagt
    23641 gacgagtaaa gcgaatcgta tgggtgttgt cttagaaggc atgccaatta aagcgcatta
    23701 tgatgatatg ccaccgcacc aatctgtgaa acgtgggaca attcaagtga aaaaagaagg
    23761 tgccccagtc attttattaa atgaccatta tacattaggc agttacccac aaattggtac
    23821 gattgcgtct tatcatttgt ctaaaattgc gcaaaaacgt caaggttcga aaattaagtt
    23881 tcaatttatt gacgtgttgc aagcagaaca aaacttagtg aaatatcaca aatggcgtaa
    23941 acaattgttc caagttatcg aatttagaat gcaaaaagaa atgttgaagt aactcaattt
    24001 gacaggaaac caagaaatac tacttgagtc cgaatacaat ttcagcgcat tacattacag
    24061 tataataaaa tacattcgac ttgctgtgca cagcgcttga tgaagataat atgaagcact
    24121 gataaagtta atatgaagtt gcaatgaatg tgatccatac aaacagtttt gacttgaaat
//
LOCUS       DANHOL010000022        23368 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.022, whole genome shotgun sequence.
ACCESSION   DANHOL010000022 DANHOL010000000
VERSION     DANHOL010000022.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 23368)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23368)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23368
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.022"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(30..1628)
                     /locus_tag="PTC08_000622"
     CDS             complement(30..1628)
                     /locus_tag="PTC08_000622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HDK5682152.1"
                     /translation="MKTHWQTAAGRALLLKQLVAHQSVTHSEGEQSFPYLVKDQLMSL
                     DYFKAHPEQIHLVPTDDGRHAVVALYLGATSHKAVTCISHFDTVGIEDFGLYQSEAFD
                     MDRLTATFQGHVEDFDKEVQVDIQSGQYLFGRGSMDMKPGLMLHMSLIEKAIIEQWDI
                     NLILMTVPDEEVTSQGMHAAVAHLDELCQQHQLDIVLHLNSEPTFQQQGNDIHYFYSG
                     SIGKIMPGVFVNGRETHVGTPALGLSSNFMMSYILQEIEYSARFKETFEGESTPFPVT
                     LKMNDVKHHYDVQTPFRTVALFNLFLFKHNANDVFQQFNAAVKEGMHKAWAAYQQRMK
                     DEDVAPLPQLQLLTYQELYQYACQHHGERAVKDRVDQAIQNEQEPHAQSILIIDALIR
                     LCKSLGPVVVTFFAPPYYPATNASFHPLVEAIKQTITDTAKQQFNRVSERIHYFNGIS
                     DLSYVAPSPNGSGFDAFRDHTPVFGQTYHIPFEAIERIQAPFLNCGPIGKDAHKVTER
                     VHQQSAFEELPIILETIIKTHFLS"
     gene            1812..2168
                     /locus_tag="PTC08_000623"
     CDS             1812..2168
                     /locus_tag="PTC08_000623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3139 domain-containing protein"
                     /protein_id="HDK5682153.1"
                     /translation="MLKKIIGIILSLIVIFIVVAGAFFAFKGYQKSQNLKMIDQYLTE
                     NHLKDKVIEEKDEYDPRKGIFYKELTIKGDEKNTYIAQPIHMKRGFFLQGFNTETKKH
                     DKNAKYSFFDEDYKLK"
     gene            complement(2336..3283)
                     /locus_tag="PTC08_000624"
     CDS             complement(2336..3283)
                     /locus_tag="PTC08_000624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactate dehydrogenase"
                     /protein_id="HDK5682154.1"
                     /translation="MINKVALIGLGRVGSQILTDIQYAGLFQEIILIDTDRDRIEGEA
                     LDHEHFQGLSGTHHTRIKVGTYEMLADVDLIIISASIPSNADMADRTKLTAYNTKIIQ
                     EIMAQITAVTTSPHIMMISNPVDTMTYIAEVQFNYPHHKIMGTGTMLESTRFRTLIAN
                     HYQVDPKNVEAFVIGEHGKTTVPVWSRVRIAGMSLEEYEQLNGATPISKQGIRDQIDK
                     VSFDVMRKKGWTNSAISRVAVDLAEAIFYDENRILPISTVHQNVYDYTNVAFSLPTRV
                     NRDGHHEIFPIQLDAEEKTALDQSVDYIQQAIATAESVK"
     gene            3464..4537
                     /locus_tag="PTC08_000625"
     CDS             3464..4537
                     /locus_tag="PTC08_000625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M42 family metallopeptidase"
                     /protein_id="HDK5682155.1"
                     /translation="MKDTKALLQQLTDLNGIAGHEYNIKKVMNDLLEPNSDEMIYDNL
                     GGVFGKKNSKTGQRTIMIAGHLDEIGFMITKIDDNGFIRFTQVGSWWNQVMLSQKVTI
                     TTDEGRQIRGIIGSKPPHVLTPEERKRPVEMKHMFIDVGAKDKAEVEAAGIEIGNMIT
                     PYSEFETLLNEDYMTAKAFDNRFGCAVAVDVMDELKDEDINVNLVAGANVQEEVGLRG
                     AKVAAHKVKPDLAIAVDVGVAYDTPGLESNGDTKVGNGPIVLNLDATNIGHVGLIRHV
                     KNVAKANGIDLQWDSIPGGGTDAGSFHTALDGIPSIALSLPLRYMHSNVSILSRKDYQ
                     AVVKLVTEIIRALNDEVIDEIIW"
     gene            4709..5614
                     /locus_tag="PTC08_000626"
     CDS             4709..5614
                     /locus_tag="PTC08_000626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HDK5682156.1"
                     /translation="MTHQHQKRWLGYLLVIIGASFWGIGGTVSQWLFQHANVDVTWFV
                     AVRLMLSGLLLLGIAFISEGPKVFHIWRDKRSTAQILIYGLFGMLTVQYTFMVTISYG
                     NAAVATLLQYLGLIFIIFYLVFRKVTKIGVKEIVAVLLALTGTFLLLTNGNILNLQVP
                     KLTIVWGLLSAIALAFYTIYPVKLLARWSSLTVVGWAMFIGGCALSIVHPPWQMDFTT
                     WTLPTYLYFGFAIIFGTMLAFWFYIDSLRYLHPHESGLLGTLEPLTALLTSVVWLHTT
                     FGVWQLVGVACIIMMVVIISVVQNK"
     gene            complement(6111..6446)
                     /locus_tag="PTC08_000627"
     CDS             complement(6111..6446)
                     /locus_tag="PTC08_000627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4889 domain-containing protein"
                     /protein_id="HDK5682157.1"
                     /translation="MKEKQTIGIVLIVAMLVVTVGVVVAMMLAGQKETYYGYMKDDTT
                     AEKVVSESEKTVETNVKIPTDDDFRPEKGDFVKLVAKKDEPHVYIKKKIVSHDDVPHG
                     LMMKIHDMH"
     gene            6730..7923
                     /locus_tag="PTC08_000628"
     CDS             6730..7923
                     /locus_tag="PTC08_000628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDK5682158.1"
                     /translation="MSEFNGHQKIQDQWLLVFGIILIAATLRAPLTAVGPVIQQVKTD
                     LHINNGIAGLITTIPLIIFGVVSPFVSRMLSKISMSRFLFLTLMLTMVALLIRILGGI
                     LTFFIGTVLLGVSIALANVTLPAYAKWAFPTQIGLITGIYSATMNFTAGLGGGLSYPL
                     STVTSLSYRFSLVFWVAFAVVAFVIWLPQLKQASYLASQQHEGLRKPIYCSKIAWAVA
                     LTMAFQSMMFYSIVAWYPSILVSKGIEPEMAGYFLMLNQFSQLPMTFTFPIIAAKMST
                     QRSLISIVAALMSVGFMLLFFNNTWILLMAMILTGMGIGACFSLCMTMFSIRSKTTAG
                     SMALSGFGQSVGYWIAAIGPFLLGMAHDLLNNWTVAIVLFLMMVVAVFSAGMIAAQNK
                     YIEDE"
     gene            complement(8009..10102)
                     /locus_tag="PTC08_000629"
     CDS             complement(8009..10102)
                     /locus_tag="PTC08_000629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDK5682159.1"
                     /translation="MQGITIELMKQYTSSAYRVFNRIELFVSFEGVLTLELNGKKSHF
                     YHQVAIINHNDIVKVKDAQAVAKISIPLHYFSEYQPHYLLGFFNQEKLSSHNIITTQI
                     KKVITENNTDQYFECFKPIIEMLVNECFIDTGAVHVPRVQVKSILFNNIMDYVHQRPL
                     SRLSLPELSEHFFVTESYISTLFNRYLNYTFKKYFVSLKIGLSMYHLLHTNESINQIA
                     LYYQFSSYNHYSKQFKRFIGVSPIAFRKQHQKQVIQVDIQPFDDQYFEGHLLDVLEKF
                     NANQPLSIYLNQSQQTRWLPSKRLLLEVQHMREMMQIFHPTPHVQTYQKATPITLYFN
                     ATSWGNITFDNLDEVKCLSQLVYHHQYGIAYRISSMQSYEKFKLHFLQPLLQVLRQSA
                     IDFDMSQLYFNLVLDDATLLARDIKFIIQEMNTLLESCQFTLLIYIPMPQRTLQLDTD
                     FDYYMVDMSLVNSTAQSTSSSLQLTHPFHRQLKDWLEDYNLNQRPILLSGVNEWLYAQ
                     KEEKVHPREWLEIWLNMHHTVQGLTLPLICHQPEMHGYFDRLGHQTALQHVFHLMQPF
                     NHSHSVVERSYVVHESRLAYDILLFHPYQVQNDQKDLTYELYGTLELHQHLVAEYTYH
                     PKYSNIDDILAKNAEGYYLPPQFISTIHAANQLLFHVQLHHFGKSRYQTTLPVGHIKL
                     IHITKSQAQQQSDIL"
     gene            10679..12118
                     /locus_tag="PTC08_000630"
     CDS             10679..12118
                     /locus_tag="PTC08_000630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sucrose transporter subunit IIBC"
                     /protein_id="HDK5682160.1"
                     /translation="MAYQKEAATILKAVGGEENIEEMAHCATRLRLTLKDEGKVDEET
                     LSQIDVVKGTFSTSDQYQIIIGSGTVNKVFQAVQTLMKGDTVEHTHQENNKQKKKGHP
                     LQRFVKMLSDIFVPIIPAIVAGGLLMGLNNILTAKGIFSESQSVVEMYPHFAEFASMI
                     NIFASAPFALLPILIGFSAAKRFGGNAFLGAALGAIMVHPALMNGYAYPEALTNGDPI
                     PRWHILGLSIAQVGYQGQVLPTLVATYILAQLEKGLRRVVPTVLDNLLTPLFAILITA
                     FLTFLFVGPLTRTAGFWLTDGLTWLYETGGAVGGFLFGLFYAPIVITGMHHSFIAIET
                     ALIADSAKTGGSFIFPIAAMSNMAQGAAALAAFFLIKQNQKLKGVASAAGVSAVLGIT
                     EPAMFGVNLKLRYPFIGAMTGSALGSAYVSFFKVKATALGAAGIPGVISIAPGSWTHY
                     IIGMCIAFIGSFVITLILSKQKKYQGLAE"
     gene            complement(12816..13754)
                     /locus_tag="PTC08_000631"
     CDS             complement(12816..13754)
                     /locus_tag="PTC08_000631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium transporter CorA family protein"
                     /protein_id="HDK5682161.1"
                     /translation="MIRAYRNDADLRVVESEDWEHAQWLNVVKPTQAEIQRLIDMYAF
                     PQDFLEDALDSEESSRIEYDDDSGYSLIISDFPITKSGQYKLKSFTTLPLGIIIGKDI
                     IVTVCAKSFHYFDHLIQKPINLKYKSQFALKVMYDMAAQYNRSLRLLNKERRQVEYNL
                     QQRVTNQRLFLLSEIEKSLVYFLGSLKTNSSTIRHLFRLPAIKRFDDDEELLEDLKNE
                     HQQAVETTELYLRIVESMSNSYASLLSNQLNTTMKTLTIFTVLLTLPTLVFSFFGMNV
                     PLPIDTESGLSWLIIIVLSVVLVVVLFVFLWRNDKL"
     gene            complement(13751..14215)
                     /locus_tag="PTC08_000632"
     CDS             complement(13751..14215)
                     /locus_tag="PTC08_000632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HDK5682162.1"
                     /translation="MTQNNDYELFLFYYAYQTFTKTADDLIAEYDMSRQHHRFLFFIN
                     KLPGITTKKLLENLEISKQGSHATLKLLKAKGLIYDEPDLTDRRLKRLYPTSEGKALI
                     KKLNRAQSDLLNRIKSEFGDDWYAIMEGFASYRQGYKDIRHLKQDIEEGDAT"
     gene            14626..16281
                     /locus_tag="PTC08_000633"
     CDS             14626..16281
                     /locus_tag="PTC08_000633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na/Pi cotransporter family protein"
                     /protein_id="HDK5682163.1"
                     /translation="MSVTEVIFSFLGGLGIFLYGLKIMGDGLQASAGDRLRNILNKYT
                     SNPVLGVLAGMIVTILIQSSTGTTVITIGLVTAGFMTLKQAIGVIMGANIGTTVTAFI
                     IGIDLGEYAMPILALGAFLIFFFKRSKINNIGRVLFGFGSLFFGLEFMGGAVKPLAEL
                     EGFRQLMLDMSSHTIYGILVGIGLTALVQSSSATIGILQEFYSQDLITLQGAIPVLLG
                     DNIGTTITAILASLAGSLAAKRAAFVHVIFNVIGVIIFTLLLPIVIPLIATIQDAWHL
                     KPVMTIAFAHGAFNVTNTLIQLPFVGVLAWIVTKIVPGKDVTEDYKPQHLNKDLVYHA
                     PGVALQETQKELQNVGNIVRSMLDDVHHPSQMDKKMIKNVQQKHQAVVTISDSIRNYL
                     VRISTKNITRKDVERLAVMFDVNRSILKVSELIEAYIEQVNRKKAKEITLTEDAERGI
                     DKLYRFVDESFTKAIETLDVYDTTKKDEVVERSREAFNIEHQLRKGHIKRLNRGECST
                     DGGLLYVDIIAVLERIGYNSRNISEAMVGLNEDVSTEEEVVNV"
     gene            16584..16787
                     /locus_tag="PTC08_000634"
     CDS             16584..16787
                     /locus_tag="PTC08_000634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682164.1"
                     /translation="MWTEEGEDSENLAPLTELKTGGATTNSGEAGATTTAVSPWLWVI
                     SIAALIVALVALFKRRNFTKSDK"
     gene            16995..17453
                     /locus_tag="PTC08_000635"
     CDS             16995..17453
                     /locus_tag="PTC08_000635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2871 domain-containing protein"
                     /protein_id="HDK5682165.1"
                     /translation="MRRILYAFMTYTVLGLLSGFAYRELTVHYEFTGSTQMSVMHTHL
                     LTLGMFMFLILIPIEKLFKISSYYLFNWYFIIYNIGVLTTVSMQFMKGFKQISGGTIP
                     ASFAGFAGIGHVTITAGFILLFFLLRQAILVSPRDGAVAKDEVKDETPVE"
     gene            complement(17530..17946)
                     /locus_tag="PTC08_000636"
     CDS             complement(17530..17946)
                     /locus_tag="PTC08_000636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDK5682166.1"
                     /translation="MTTEVKYEIPTPADYCELRRITGLSAKSEAAARVGLPNACFTVT
                     IYDDHQLIGMGRVIGDGATAFQIIDVAVRPKYQGQGHGKVIMQQIMDYIESVRQPGTY
                     VSLIADYPADQLYAQFGFISTEPRSGGMYRHYPVEK"
     gene            complement(17967..18995)
                     /locus_tag="PTC08_000637"
     CDS             complement(17967..18995)
                     /locus_tag="PTC08_000637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HDK5682167.1"
                     /translation="MKDVTIIGGGPAGLYASFYAGLRGMDVRIVDVQRELGGKMQIYP
                     EKIIWDIGGVAPQSCYDILKNIIQQGLHFNPEVLLETKVTNIIKHDEHHFEIITADGQ
                     SLMSRAIILAIGAGIIKPLPLKIEGAERFELTNLHYVVQQYQKFKNKDVLISGAGNSA
                     LDWARDLSGYAKSVKLVYRKKDISGHEAMQNILDSLNVQKFPNSKIVQLKSTADDANK
                     INEVILENGETGETTIHRVDEVIISHGFERELTLLNDSDVTIQTVNDDYVYGEKNTCT
                     SVPGIYACGDIVQHPAKVHLIASAFSDAAHAANSAKQYIDPSAPKEGYVSSHNDVFKE
                     ANRQFLPH"
     gene            complement(19182..20525)
                     /locus_tag="PTC08_000638"
     CDS             complement(19182..20525)
                     /locus_tag="PTC08_000638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar porter family MFS transporter"
                     /protein_id="HDK5682168.1"
                     /translation="MKINKKMIFFIGALGGLLYGYDMGVISGALLYLKDDIPLNAYTE
                     GLVVSSMLVGAIVGAGLSGPLSEKLGRRRLVFMISIVFIIGALILALAPTMEILVLGR
                     VIIGLAVGGSTAIVPVYLSELAPTDARGSLSSLNQLMITIGILASYLVNYAFAPIEGW
                     RWMLGLAVVPSVILMIGVIFMPESPRWLLEKRGEKAARDVMKLTYPASEIDHEIENMK
                     KINQIADNTWTVLKSPWLLSTIIIGSVFALLQQLIGINAIIYYAPKIFATAGFGESTA
                     ILSTVGIGVVNVLVTIFAISIIDKIDRKKLLVIGNIGMVASLLIMSALIWLIGVNSAA
                     WIILLCLTTFIIFFGVSWGPVLWVTLPELFPMRARGAATGIAALVLSIGSLLVAQFFP
                     VLTDVLQVQQVFLIFAVIGIIAMIFVIKFLPETRGRSLEQIEQDLRARTNAKNVE"
     gene            complement(20762..21757)
                     /locus_tag="PTC08_000639"
     CDS             complement(20762..21757)
                     /locus_tag="PTC08_000639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HDK5682169.1"
                     /translation="MTETFKAFRVTHDEDTLSADFTKLTLDDLSEGDVTIRVHYSSIN
                     YKDVLATKSNNKIIRNYPIVPGIDLAGVVMASDHPSFKEGDKVIATGYDLGVNHDGGF
                     SEVARVKGDWLVHLPEDLTLEEAMIIGTAGFTAAISIQLLEDNKITSTNGPVLVRGAT
                     GGVGVMSVMMLNAIGYKVIASSGQTEHHAQLKALGARTVIPRIDEVTDKALASTEWQA
                     AIDPVGGETLTEVLKRIQRHGAVAVSGNLSGAEFTSTVYPFILRGIRLLGADSVAFPM
                     QRRQHLWRRLSKDLKPAKLHDIKTVVPFSELKTYLAKAEKHDFLGRIVVDLRPEA"
     gene            21889..22407
                     /locus_tag="PTC08_000640"
     CDS             21889..22407
                     /locus_tag="PTC08_000640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDK5682170.1"
                     /translation="MGYELRKVTVTEVATLQQISKDTFYAAYRDDYEQALFDSYFAEE
                     MSIKKLTAELEDPDMHFFFLYNDDVIVGYVKVNVGAAQTVAKGIQYAELQRIYLYPDY
                     QGQGLGQWLFDFVCDFVKNVLGKSKLWLGVWEENRPALNFYLKQGLVKTGVHPFKMGK
                     HIDEDWIMEKDL"
     gene            22512..23216
                     /locus_tag="PTC08_000641"
     CDS             22512..23216
                     /locus_tag="PTC08_000641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682171.1"
                     /translation="MKRLLASLMIVPLLLVACSDDEGKDKDQSSNKDQTTQKDKKADQ
                     DKQKDNKAKDSKEKDNKAKDTQSNDNGAASSDVNQGTNDGQSTTESQQNQNQADQGQS
                     STQDQQNNATNGNGNGQNQTSQSSSQSQPKYVAPYQGQNVTPVAQNIVRQEVDRQQAL
                     RHLPNFQTSLDSAQAEVNRLNGQNNPYNDYALQGDGNRYSYMFSFINQSQPGTYTIVT
                     VDGTGHAKIVDPAYRQ"
BASE COUNT         7353 a         4128 c         4706 g         7181 t
ORIGIN      
        1 tcgtgatttg gcaatatttt actattcaat tatgataaaa aatgtgtttt gattattgtt
       61 tctaaaataa taggtaactc ttcaaaggca ctctgttgat gtacgcgctc ggtcacttta
      121 tgggcgtctt taccgatagg accacagttc aaaaatggtg cttgaatccg ttcaatcgct
      181 tcaaacggaa tatgatatgt ctggccaaat acaggtgtgt gatcgcgaaa tgcgtcaaat
      241 cctgaaccat ttggagatgg tgcaacgtaa cttaaatcac taataccatt aaaataatga
      301 atgcgttctg acacacgatt gaattgttgc ttggcagtgt ctgtaatcgt ttgtttaatt
      361 gcttcaacta aagggtgaaa cgatgcattc gttgctggat aatacggtgg tgcaaagaat
      421 gtaacaacga cagggccaag tgatttacaa aggcgaataa gcgcatcaat aatcaaaata
      481 gactgtgcat ggggctcttg ttcgttttga atggcttggt caaccctgtc tttaactgcg
      541 cgctcaccat gatgttgaca tgcatattga tacaactctt gataagtcag caactgcaac
      601 tgaggtagcg gtgcgacgtc ttcatctttc attcgttgtt ggtaagccgc ccaagcttta
      661 tgcatgcctt ctttgaccgc cgcattaaat tgttggaaaa catcatttgc gttatgttta
      721 aataagaaaa gattaaataa agcgactgta cgaaatggcg tttggacatc ataatgatgc
      781 ttaacatcat tcatttttaa tgtgacaggg aagggcgtcg actcaccttc aaatgtctct
      841 ttaaaacgag cgctatattc aatttcttga aggatataac tcatcataaa attcgaactt
      901 aaaccgagtg cgggtgtacc gacatgggtt tcacgaccat tcacaaaaac gcctggcata
      961 attttgccaa tcgacccgct ataaaaataa tggatgtcat tgccttgttg ttgaaatgtc
     1021 ggctcactat ttaaatgtaa gacgatatcg agttgatgtt gctgacaaag ttcatctaag
     1081 tgtgccactg cggcatgcat tccttgtgaa gtaacttctt cgtcaggtac agtcatcaaa
     1141 atgaggttga tatcccattg ttcgatgatg gctttttcaa tgagtgacat atgtaacatg
     1201 aggccgggtt tcatatccat actgccgcga ccaaataaat attgaccgga ctgaatatcg
     1261 acttgaactt ctttatcaaa atcctcaaca tgtccttgaa aagttgctgt gaggcgatcc
     1321 atatcaaaag cttcagattg gtataaacca aaatcttcaa tacccactgt atcaaaatga
     1381 ctgatacatg tgacggcttt gtgagaggta gcgccaagat ataaagcaac taccgcatgt
     1441 cgaccatcgt cagtcggtac gagatggatc tgttcagggt gtgctttgaa ataatcaaga
     1501 gacatcaatt gatctttcac taaataagga aacgattgtt caccttctga atgtgtcaca
     1561 ctttgatgtg caacgagttg ttttaacagt aatgctcttc ctgctgctgt ttgccaatgt
     1621 gttttcatac tatcttctcc tttgtgtact gtttccagca tacagtctca ttgtaagtgt
     1681 tttcatagca tttgccaatg acatccaatg actttatgac gtttgtgtga cggaggaagt
     1741 tctcttagat gtctcaaact gatttgtgtt aatatagtaa aataagatag tacaaagtgg
     1801 gggcatatga catgttaaaa aaaataatcg gtattatttt gtcactcatc gttatattta
     1861 tcgttgttgc cggtgcattt tttgcgttta aagggtacca gaaaagccaa aatttaaaga
     1921 tgattgatca atatttaact gaaaatcatt tgaaagataa agtcattgag gaaaaagatg
     1981 agtacgaccc gagaaaaggg attttttata aagagttaac gattaaaggc gatgaaaaaa
     2041 atacatacat cgcacagccg atccatatga aacgtggatt tttcttacaa ggctttaata
     2101 cagaaacgaa aaagcatgat aaaaacgcga aatatagttt ctttgatgaa gattataagt
     2161 tgaaataact gtttcttaat taggaaatac gagcttgaaa gttttacgaa tgcggacatg
     2221 ttcttgcttg atgatgtgga taagatgatg aagaaaagac tcggacgaat tgatgttccg
     2281 agtcttttta tgcaaaggca atgatacagc ccttatatga agtgtgattc tcatgctact
     2341 ttacagattc tgctgttgcg atggcttgtt gaatatagtc cactgattga tcgagtgctg
     2401 ttttttcctc tgcatctaat tgaattggga atatttcatg gtggccatcg cgattcacac
     2461 gtgtcggcaa gctaaaggcc acattcgtat aatcatatac attttgatgg acagttgaaa
     2521 tcggtaaaat acgattctca tcataaaaaa tagcttctgc taaatcgaca gcaacgcgtg
     2581 aaatggctga atttgtccaa ccttttttac gcatgacatc aaaagaaact ttatcgattt
     2641 gatcacgaat gccttgtttc gaaatcggtg tcgccccgtt caattgttca tattcttcta
     2701 acgacatgcc ggcaatacgg acacgactcc atacaggcac agtcgtttta ccgtgctccc
     2761 caatcacaaa agcttcgaca ttttttggat caacttgata atgattggca atcaatgtgc
     2821 gaaaacgtgt cgactctaac atcgtgcctg ttcccataat cttgtgatgt gggtagttaa
     2881 attgtacttc agcaatataa gtcatcgtat ctactggatt tgaaatcatc ataatatgcg
     2941 gagatgtcgt aactgcagta atctgggcca ttatctcttg gatgattttc gtattgtatg
     3001 ctgtcagttt cgtacgatcc gccatatctg cgtttgaagg aatgctggca gaaataatga
     3061 ttaaatcaac gtctgctaac atctcgtatg taccgacttt aatacgtgta tgatgtgtcc
     3121 cgcttaaccc ttgaaaatgc tcatgatcga gcgcttcacc ttctatacgg tcacgatctg
     3181 tatcaattaa aatgatttct tgaaacagac ctgcatactg aatatctgtt aaaatctgac
     3241 tccctacgcg tcctaaaccg atgagtgcga ctttattgat cattctaaac cctccttgaa
     3301 gttgtatcaa aatatatcat tagattgact caagtataca taatattagt ataaactttg
     3361 tgaaagacaa gatgcaatga ccaagcaatt catcagcaag tacatttttc agaatttttg
     3421 gtatgataag taggacacat cctataaagg gggacaatga ataatgaaag atacaaaagc
     3481 attactccaa caattaacag accttaacgg gattgctgga catgagtata atattaaaaa
     3541 ggtgatgaac gaccttttag aaccaaatag cgacgaaatg atctatgaca atttaggagg
     3601 tgttttcggt aaaaaaaatt ccaaaacagg tcaacgtaca attatgattg ccggtcatct
     3661 ggatgagatt ggctttatga ttacgaaaat agatgataat ggctttattc gttttacaca
     3721 agttggaagt tggtggaatc aagtcatgtt atcgcaaaag gtaacaatta cgacagatga
     3781 aggtcggcaa attcgcggca ttatcggttc aaagccaccc catgtactca cacctgaaga
     3841 acgtaaacgc ccagtcgaga tgaaacatat gtttatcgat gtcggtgcaa aagataaagc
     3901 tgaagttgaa gcggcaggca ttgaaattgg caatatgatt acaccatatt ctgaatttga
     3961 gacgttatta aatgaggatt acatgaccgc gaaagcattt gataaccgct ttggttgtgc
     4021 agttgcagtc gacgtgatgg acgagcttaa agatgaggat atcaatgtga atttagttgc
     4081 aggtgcgaat gtacaagaag aggtggggct acgtggtgca aaagtggctg ctcacaaagt
     4141 gaaacctgat ttagccattg cggtagacgt cggtgtcgcg tatgatacac caggtttaga
     4201 aagtaatgga gacactaaag taggcaatgg tccaattgtg ttaaatttag atgccacaaa
     4261 tattggtcat gtcgggttaa ttcgtcacgt gaaaaatgta gctaaagcga atggtatcga
     4321 cttgcaatgg gattctattc caggtggcgg gacagatgct ggaagtttcc atacagcgtt
     4381 agacggtatt ccttctattg cattgtcact gccattacgt tacatgcatt caaacgtatc
     4441 gatactgagt cgcaaagatt atcaagccgt cgttaagtta gtcactgaaa ttattcgtgc
     4501 gttaaatgat gaagtgattg acgaaatcat ttggtaaaat atttaaaacc acaatttaag
     4561 cagaattcca cttgttcaac taagcagtgg tgttctgctt tttatgtaga gcgataaaag
     4621 taatgtgaaa gaagcaaaaa gatattgtct tcacgtgtga gtcatgatag attagacaaa
     4681 aatataaaga caacagagga gtctttccat gacacatcaa catcaaaaaa ggtggttagg
     4741 ttatttatta gttatcattg gcgcttcatt ttgggggata ggtggaacag tctcacaatg
     4801 gctttttcaa catgcaaatg tcgatgttac atggtttgta gccgtgcgac tcatgctctc
     4861 agggctgtta ttactcggca ttgcttttat ttcagaaggt ccgaaagtct ttcacatctg
     4921 gcgtgataaa cgatccacag cacaaatttt aatttacggc ttattcggta tgcttaccgt
     4981 acaatatacc tttatggtta ctatcagcta tgggaatgcg gcggtcgcga cattattaca
     5041 ataccttggt cttattttca ttatttttta tctcgttttc aggaaagtta caaaaatagg
     5101 tgtgaaggaa attgtagcgg tattgcttgc attaaccggt acatttttat tactgactaa
     5161 cggtaatata ctgaatctac aagtccctaa attaacgatt gtatgggggt tactgtcagc
     5221 catcgcgctt gctttttata ccatttatcc agtgaagtta ttagcacgat ggagttcact
     5281 gactgtcgtc ggttgggcaa tgtttatcgg aggctgtgca ttaagcatcg tgcatccgcc
     5341 atggcaaatg gactttacta cttggacgtt accgacttat ctttattttg gatttgccat
     5401 tatttttgga acgatgctcg cattttggtt ttatatcgat agcttgcgat atttacatcc
     5461 acatgaatca ggattattag gcacacttga accattaaca gcactcttga catctgttgt
     5521 ttggttacac actacgttcg gagtgtggca actggttggt gttgcttgca tcataatgat
     5581 ggtcgtcatc atctccgtcg tccaaaacaa ataacgacat catacaggtt gaggaataaa
     5641 aaaacagatt gcataacaac ccaggaagtc taacaaaaaa gatgaataga gataagaaaa
     5701 agcatgagaa cacatgaaga gtgctgacga tattgattgg agttaaaaga agatgtatga
     5761 gtgaagttga cttgaatgtg gtcgtaatgt ttatagcact ttgagacaga agggacaaaa
     5821 aagattacag aacgaagctg acgtcctaaa aagccttatt gaatagcaac ctgggcgaga
     5881 ctcctgaggc atagagacga gaccgaaaat ccaccaacgc atctaccaat gtaacatttc
     5941 aatcaagcgt tggttagttg aggagaggcg cctaggaacg cgagcccaaa agtgcaatca
     6001 ataaggcgaa tatataaata taaagcttca ttctataatc tataagataa tgcgctttca
     6061 atttagaacg agaagataag aaatgtttct caattcttta agtcaacata ctaatgcatg
     6121 tcgtgaattt tcatcatcaa cccatgtggc acatcatcat gtgacacaat ctttttctta
     6181 atatatacat gtggctcatc ttttttcgct acaagcttca caaaatcacc tttctcaggt
     6241 ctgaagtcat catcggttgg aatcttcaca tttgtttcta cagttttctc agactcactc
     6301 accacttttt cagcagtcgt gtcatctttc atataaccgt aataagtttc cttttgtcct
     6361 gcaagcatca tcgccacaac tacgcctact gtaacgacta acatcgccac aatcaacacg
     6421 atacctatcg tttgtttttc tttcattgat gtgtctcctt tggaaaattt aattgcgact
     6481 tcataataag tcacttctta ttgtatcgaa agaaaatact ttcgaaaagc aaaatattta
     6541 atgtacatac gatgttaagc gatagacttt gttgtctgta ttatgtgcac agtgaacaag
     6601 tatatgaaaa tctgtacgaa agattacgta gagaatcttc aaatttttcg cgagtcgtga
     6661 atggcgttgt ggtatagtat ctatattaaa aattatcgct tccatgaggc aagaggtgga
     6721 gggacaacaa tgtctgagtt caatggacat caaaaaattc aagatcaatg gctactcgtc
     6781 ttcggtatta ttttaattgc ggccacgtta cgcgcgccac tcacagccgt aggaccagtc
     6841 atccaacaag ttaaaacaga tttacatatt aacaatggga ttgcaggttt gattacgacc
     6901 attccactca ttatttttgg tgtggtatcg ccatttgtat cgcgtatgct ttcaaaaatt
     6961 tcgatgtcac gctttttatt tttaacttta atgttaacga tggtcgcact gctcattcga
     7021 attttgggag ggatactaac atttttcatc ggaacagtgt tactcggtgt atcgattgca
     7081 ctagccaatg tcacgttgcc ggcttatgcg aaatgggctt tcccgacaca aattggttta
     7141 attacaggaa tttatagtgc gacgatgaac tttacagctg ggttgggtgg gggattaagt
     7201 tacccactgt ctactgttac atcgttatca tatcgctttt cactcgtgtt ttgggtcgct
     7261 tttgcagtgg tagcattcgt aatatggttg cctcaactga aacaagcgtc ttatttagct
     7321 tcacaacaac atgagggatt gagaaagccg atttattgtt caaaaattgc atgggcggtg
     7381 gcactcacga tggcattcca atctatgatg ttttatagta tcgtcgcttg gtatccgtca
     7441 atattagtga gtaaaggcat tgaaccggaa atggcgggat actttttaat gttgaatcaa
     7501 ttttcgcaat taccgatgac gtttacattt ccgattattg ccgcaaagat gtcgacacaa
     7561 agaagtttga tcagtatagt tgcagcgctg atgagtgtag ggtttatgtt gctgtttttc
     7621 aacaatacgt ggatattact tatggcgatg attttaactg gtatgggcat tggcgcatgc
     7681 tttagtttat gtatgacgat gttttcgatt cgttcaaaaa caacagccgg cagtatggct
     7741 ttatcaggtt ttggtcagtc ggtcggttat tggatcgcgg cgatagggcc ttttctactt
     7801 ggtatggcac atgatttgtt gaataattgg acggtcgcta ttgtgttgtt tttaatgatg
     7861 gtcgtagctg tatttagtgc aggtatgatt gccgcgcaaa ataaatatat tgaagatgaa
     7921 taagtgataa aagtaagggt taagacgagg tatgcacctt gtcctaaccc ttattttgga
     7981 tgacgttcaa acgctcacca gcaaacgatt acaatatatc tgattgttgc tgtgcttgac
     8041 ttttcgtaat atgaatcaat ttgatgtggc caacaggcag tgttgtttga taacgtgact
     8101 taccaaaatg atggagctga acatgaaata acaattgatt cgctgcatga atggttgaga
     8161 taaactgtgg aggtaagtaa taaccttctg cgttttttgc aaggatgtca tcgatgttac
     8221 tgtattttgg atgatacgta tattctgcca ctaaatgttg atgtaactct aaagtaccgt
     8281 atagctcata cgtcaaatcc ttttggtcgt tttggacttg atacgggtga aataacaata
     8341 tatcataggc caatcgcgat tcgtgaacga cataggaacg ttccacgaca ctatgcgaat
     8401 gattgaaagg ttgcattaaa tgaaatacgt gttgtagcgc ggtttgatgg cccagtctat
     8461 cgaaataacc gtgcatttct ggctgatgac agatgagcgg taaagttaaa ccttggacgg
     8521 tatgatgcat atttaaccaa atttccaacc attctctcgg gtgtactttc tcttcttttt
     8581 gcgcatataa ccattcattg acaccggata ataaaatagg acgttgattc aagttgtaat
     8641 cttctagcca atctttaagt tggcgatgga aaggatgtgt cagttgtaat gatgaagatg
     8701 tggattgcgc agtactgttc accaatgaca tatccaccat atagtaatca aaatctgtat
     8761 caagttgtaa cgttcgttgt ggcatcggta tgtaaatgag taaagtgaat tggcaacttt
     8821 cgagtaatgt attcatctct tgaatgatga atttgatgtc acgtgctaaa agtgttgcat
     8881 catctaatac gagattgaaa tacaactgtg acatatcaaa atcaatagca gattgacgta
     8941 gcacttgtaa taacggttgt aaaaagtgca atttaaactt ttcataactt tgcatagatg
     9001 agatacgata agcaatgcca tattgatggt ggtacactaa ctggcttaaa catttgacct
     9061 catccaagtt atcaaacgtg atattccccc atgatgttgc gttgaagtac agtgtgatag
     9121 gagtcgcttt ttgatacgtt tgcacatgcg gagttggatg gaatatctgc atcatttcac
     9181 gcatatgttg tacttcaagg agtaaccgtt tagatggtag ccagcgcgtt tgttgggatt
     9241 gatttaaata aatgcttaac ggctggtttg cattaaattt ttcaagaaca tcgagtaaat
     9301 gaccttcaaa atattgatca tcaaacggtt gaatatcgac ttgaatgact tgcttttgat
     9361 gttgctttcg aaacgcaatc ggactgacgc caataaaacg tttaaattgt ttagaataat
     9421 gattgtaact actaaattga tagtataatg caatctgatt aatcgattca ttcgtgtgca
     9481 gtaagtgata catggataag ccaattttca gtgaaacaaa atactttttg aacgtataat
     9541 ttaaatatct gttaaacaat gttgagatgt atgattcggt aacaaaaaag tgctcactta
     9601 actctggcaa agataatcga gaaaggggtc tttgatgaac ataatccatg atgttattaa
     9661 ataagatgct tttcacttga acccgtggca catgaactgc ccctgtatcg ataaaacatt
     9721 cattgactaa catttcgata atcggtttga agcattcgaa atattggtcc gtgttatttt
     9781 cggtaatcac tttttttatt tgtgtggtga ttatattgtg agatgataac ttttcttgat
     9841 tgaaaaagcc taataaataa tgtggctgat attctgagaa gtagtgtaat ggaatagaga
     9901 tttttgcaac agcttgtgca tctttaactt taacgatgtc attatggtta atgattgcaa
     9961 cttgatgata aaaatgactc tttttaccgt tgagctcgag tgtcaggacg ccttcaaatg
    10021 aaacgaataa ttcgatacga ttaaatacac gatatgcact agatgtgtac tgtttcatta
    10081 attcaatagt gatgccttgc ataatggacc tctctcaaat tcagtatttt tcaacagcat
    10141 tgaaatgact taataaatca acattattat agaattattg attgttagac cacaatatga
    10201 tttgcaatat tgtgaaaaga aagacttaaa gtgaaaagat aatgacatat taaaggtttt
    10261 aaaaagagta tagaaaacaa tattctttaa aaaaagatat atcgcagtga aaaaacgtgg
    10321 taaacatttc agaaacggtg ttgtactatg aaaggtgttt gaaaaattta aagctcaaaa
    10381 atagaatatg aaacacttgg gagagaaagt aacaccaata gctgacaggt tttgaagtaa
    10441 catcactata acatattctt aacaaagcga cacccttgat tgctacatcg ttaaacagaa
    10501 gtgacaaaga attttgaata ggtattgatt atccatttga aaacgaatac aatgaagata
    10561 atcgtttttt tggtaccggt tccaaaaaag tttcgaaagc attgaatagg tcattttgga
    10621 gccttgcatt gtttttgaaa cgtatttaag catgcaagac aactgaagga gtgatgttat
    10681 ggcctatcaa aaagaagcag caacgatttt aaaagcagtg ggtggagaag aaaatattga
    10741 agaaatggcg cattgtgcaa cccgtttacg cctcacattg aaagatgaag gcaaagtaga
    10801 tgaggaaaca ctcagtcaaa tagacgttgt taaagggaca ttttctacaa gtgatcaata
    10861 tcaaattatt atcggttcag gtaccgtcaa taaagtattt caagcggtgc agactttaat
    10921 gaaaggtgat actgtcgaac atacccatca agagaataac aaacagaaga aaaaggggca
    10981 tccgttacaa cgttttgtga agatgttgtc tgacatcttc gttccaatta ttccggcaat
    11041 tgttgcgggc ggtttgttaa tgggactgaa caatattttg acagcaaaag ggatttttag
    11101 tgaatcacaa tctgttgtcg aaatgtatcc gcattttgct gaatttgcaa gtatgatcaa
    11161 tatttttgca agtgcaccgt ttgcgttgtt acctatttta attggattca gtgcggcgaa
    11221 acgctttgga ggcaatgcgt ttttaggtgc tgcattgggg gcaattatgg ttcaccctgc
    11281 gctaatgaac ggttatgcat atccagaagc actaacaaat ggtgatccaa tcccgagatg
    11341 gcacatatta ggtttatcca tcgcgcaagt gggttaccaa ggacaagtgt tacctacatt
    11401 agttgcgaca tacattttag cacagttgga aaaagggtta cgtcgtgttg taccgactgt
    11461 attagataat ttacttacac cattatttgc tatactcatt accgcatttt tgacattttt
    11521 atttgtagga ccattgacac gtacagcagg tttttggctt acagatggct taacatggct
    11581 ttatgaaaca ggaggcgctg ttggtggatt cctcttcgga ctgttctatg caccaatcgt
    11641 tattacaggg atgcaccaca gttttattgc tattgaaaca gcactcatag cagattcagc
    11701 aaaaacgggt ggctctttca ttttcccaat cgctgcaatg tcgaatatgg cgcaaggtgc
    11761 cgctgcattg gccgcatttt tcttaattaa acaaaatcaa aaattgaaag gtgtcgcttc
    11821 agcagccggt gtatcagcag tgttagggat tacggaaccc gctatgtttg gggtcaatct
    11881 gaagttgcgt tatccattta tcggagcaat gacaggatca gctttaggtt cagcatatgt
    11941 ttcattcttt aaagtgaaag caacggcatt aggagcagcg ggcattccag gtgtcatttc
    12001 aatcgcacca ggttcatgga cacattatat tataggcatg tgtatcgcct tcattggtag
    12061 ctttgttatc acattaatct tatcgaaaca gaaaaagtat cagggcttag cagaataaaa
    12121 caaaacgtga gaattaagag gataaatatt aattatatga aagactggga tagctgcatt
    12181 gcgtcccagt cttttgacat cattgaggat acgcatctat cattaaaaaa tacgataact
    12241 aagaaaagca ctgttaattg tatgagttaa gcgtgtgaat tttatcatgt tagtacgagt
    12301 ttattatgag aatgatgatt ttaaagcgta ttgaaaaacg attctaatat gaaaataaaa
    12361 gccttgactg acgagattgc aaaatagggc gaaacgactt agaaccaaag acagtggtat
    12421 ttgtggcata tagtaatgac aaaagctttg atattggcta aaaggttagt gtgaaaagta
    12481 cttggaatgc aagggtgtaa taaccatccg agacgcctat gggataaaat gaacaattaa
    12541 ataagatttc tactgtttaa cgcaatagct gtctgacttc tccatctaga cacttttgag
    12601 aagtctagtc agccatatgg agggcagtac gacgacatct ttgttgtaca taagatttct
    12661 gtactactcc ctaaacacaa tttggcttct atcaaatgaa tattttaatt aagccaaatt
    12721 tcgttgaggc aagtccccta ggaatgcgag agatggtcca aacctaaacc taaaacctta
    12781 tgatttcata catcaaacgg ccaccaaacc tatcgttaaa gcttatcatt ccgccataaa
    12841 aagacaaaca atacaacaac aagcaccaca gaaagcacaa taataatcaa ccacgacagg
    12901 ccactttctg tatcaatcgg caatggcaca ttcatcccaa aaaagctaaa caccaaagtc
    12961 ggcaacgtta acaacactgt aaaaatcgtc aacgtcttca tcgtcgtatt caactgattc
    13021 gaaagcaatg acgcatagga attcgacata ctttctacaa tacgtaaata aagctcagtc
    13081 gtttctaccg cttgttggtg ctcatttttc aagtcttcca acaattcttc atcatcatca
    13141 aagcgtttaa ttgccggcaa acggaacaaa tgacgaatcg ttgaggagtt ggtttttaat
    13201 gaacctaaaa agtaaacgag acttttttca atttcactta ataaaaataa acgttggttc
    13261 gttacgcgct gttgtaaatt atactccact tgacgacgct ctttattgag taagcgtaaa
    13321 cttctattat attgtgctgc catatcatac atgactttta aggcaaattg acttttatac
    13381 ttcaagttaa ttggcttttg aattaagtga tcaaaataat gaaatgattt tgcacaaacc
    13441 gtcacaataa tatctttgcc gataatgata cctaacggca atgttgtaaa acttttaagc
    13501 ttgtattggc ctgattttgt aataggaaag tcactaataa ttaatgaata gccgctatcg
    13561 tcatcatatt caatacgtga actttcttcg ctatctaaag catcttcaag gaaatcttga
    13621 ggaaaagcat acatatcaat gagacgttgt atttcagctt gagtcggttt gacgacatta
    13681 agccattgtg catgttccca gtcttcactt tctactacac ggaggtccgc gtcattacga
    13741 taggcacgaa tcatgttgcg tcaccttctt ctatatcttg ttttaaatgt ctgatgtctt
    13801 tgtagccttg tctataggag gcaaaacctt ccataatcgc ataccaatcg tcgccaaact
    13861 cagacttaat tcgattcaat aaatcacttt gtgcgcgatt taactttttg ataagtgctt
    13921 taccttctga cgttggataa agtcgcttta aacgacgatc cgttaaatca ggctcatcat
    13981 aaattaaacc ttttgctttt aataatttga gtgtcgcatg tgagccttgt tttgaaattt
    14041 ctagattctc caataatttt ttagtcgtaa tgcctggcaa tttgttaata aaaaagagaa
    14101 agcgatggtg ttgacgactc atatcatatt cagcgatgag atcatcggct gttttagtaa
    14161 atgtttgata agcgtaataa aaaagaaaca gttcataatc attattttga gtcatagtaa
    14221 acttcctttt ctgaaaagtc tttttcatta tagtaaagaa ttttacatct gtcatggata
    14281 tgttgatgaa atttgaagga ttgttcacac atggatctat gagaaggtga accatgctgt
    14341 agatctacac atgccaatgt gaattttgta atgtgaatgt taagcgttta atgtgacata
    14401 aataacacaa aatttgaaat gtgacgttaa atttgtagtt actttttagg aaaatcatga
    14461 atttaaatcg aatcttcatg aaatcttaac attaaattta caaagataag agataatcag
    14521 agtgaatcat acttggatag tatggctaag atattgaaaa ataacctatt tcatgtcttt
    14581 ttttggtgtt ttttacaaac tttatattga ggtggaaaaa tggaaatgtc ggtaactgaa
    14641 gtcatctttt cgtttttagg tggcttgggt atcttcctgt atggtttaaa aataatgggg
    14701 gatggtcttc aagcttctgc tggagatcgt ttgcgtaaca ttttaaataa atatacctct
    14761 aacccagtac ttggtgtgtt agcaggtatg attgtgacaa tattaattca aagtagtaca
    14821 ggtacgacgg tcatcacaat tggtttggtc acagctggat ttatgacatt gaaacaagca
    14881 attggtgtca ttatgggtgc caacattggg acgacggtga ccgcgtttat tatcggtatt
    14941 gatttagggg agtatgcgat gccgatttta gcattaggtg cgtttcttat cttctttttc
    15001 aaacgttcaa aaattaataa tattgggcgt gttttatttg gtttcggatc actctttttc
    15061 ggtcttgagt ttatgggagg tgcagtgaaa ccattagctg aattggaagg ctttagacag
    15121 ttgatgctcg atatgtcctc acatacgatt tatggcattt tagttggaat aggtttaacg
    15181 gcgcttgtgc aaagttcgag tgcgacaatt gggattttac aagaatttta tagtcaagat
    15241 ttaatcactt tacaaggtgc gattccggtc ctgttaggtg ataatatcgg aacgaccatt
    15301 acagcaatat tagcaagttt ggcaggctca ctagctgcaa aacgagcggc atttgttcat
    15361 gtcattttta atgtcatcgg tgtgatcatt tttacgttat tattacctat cgtcatccca
    15421 ctgatagcga caattcaaga cgcatggcat ttaaaaccag tgatgacgat tgcctttgca
    15481 cacggcgcct ttaacgtgac gaacacatta attcaattgc catttgttgg tgttttagct
    15541 tggattgtca cgaaaattgt gccaggtaaa gatgtcacag aagattataa accgcaacat
    15601 ttaaacaaag atttagtgta tcatgcaccg ggtgttgcgt tacaagagac acaaaaagag
    15661 ctacaaaatg ttgggaatat cgtacgctct atgcttgatg atgtgcacca tccgtctcaa
    15721 atggataaaa aaatgattaa aaatgtgcaa caaaaacatc aagctgtcgt gacgattagt
    15781 gatagtatac gtaattatct cgtacgtatt tcgactaaaa atattactcg aaaagatgtt
    15841 gaacgattgg ctgtcatgtt tgatgtaaat cgctccattt taaaagtatc cgaattaatc
    15901 gaagcatata ttgaacaagt gaaccgtaaa aaagcgaaag agattacttt aacagaagat
    15961 gctgagcgtg gcattgataa actgtatcgc tttgtagatg aatcatttac gaaagccatt
    16021 gaaacattgg atgtatacga tacaacgaag aaggatgaag tggtcgagcg gagtcgtgaa
    16081 gcatttaaca ttgaacatca acttcgtaaa ggtcatatta aacgtttgaa tcgtggtgaa
    16141 tgttcgactg acggtggcct gctctatgta gatattattg ccgtattaga gcgtatcggt
    16201 tataactcac gtaatatttc tgaagccatg gttggtttaa atgaagatgt atccactgaa
    16261 gaagaagttg tgaatgtata gtttgttttg aattgaatga ggtgtagtgt ttgtatcttg
    16321 atcagacact acgccttttt aattgaaaag tgaaagcaaa atataacttg agaaaaatga
    16381 gggaatttca ttaaaaacta tcaaaataaa tagtcattgt tacaatgttc tgtcaaaaga
    16441 ataatgttaa gtgacaaata tttgaaaaac aaacaaaatg attgtgttca ctttaacttt
    16501 tgataatctt ttaaagatga caaatttttg attttgtaca tactgtattg atttgaaagg
    16561 ggtaaacgta tgcataggtg gtgatgtgga cagaagaggg tgaagatagt gaaaaccttg
    16621 caccattgac agaacttaaa acaggtggtg caacaacgaa tagtggagaa gcgggggcga
    16681 cgacaacagc tgtatcgcca tggttatggg taatcagtat tgctgcttta attgtagcgc
    16741 tcgtcgcatt gtttaaacga cgaaacttta cgaaatctga caaataattg ttattgacat
    16801 gatgtctatg tttaccgcta taatcagtag tatagaagat gagggttcaa catttttgcc
    16861 ttccatttat taggatttta tggatgatac atcaactagt ttgaaaaaga agggaacgtc
    16921 aatttccgta ttgcattaac tcatgacaac aagtttgagc attaacggaa ttaaaacaat
    16981 ggagcgtgaa aacaatgaga cgtattttat atgcatttat gacttatacc gtgttgggac
    17041 tattgagtgg gtttgcttac agagaattaa cagtacatta tgaatttacg ggttctaccc
    17101 aaatgagtgt catgcataca cacttattaa cgctcggtat gtttatgttt ttaatactga
    17161 ttccgataga aaaattattc aaaatcagca gctactattt atttaactgg tattttatta
    17221 tttacaatat tggtgtgttg acgacagtgt caatgcagtt tatgaaaggg tttaagcaga
    17281 tttcaggtgg taccattcca gcgtcgtttg caggatttgc cggtattggg catgtaacga
    17341 taacggctgg atttattctg ttatttttct tattacgaca agccattcta gtgtcaccac
    17401 gagatggcgc tgttgccaaa gatgaagtga aagacgaaac accagttgaa taaaacgatg
    17461 aaaacaaaaa accattcagt gcgctatcta aaatttagac acagtgctga gtggcttttt
    17521 ttgtacatgt tacttttcaa cgggatagtg gcggtacatc ccacctgaac gcggttctgt
    17581 tgagataaaa ccgaattgtg cataaagttg gtcggcaggg taatcagcga taagactgac
    17641 gtatgtaccg ggttgacgca cggactctat gtaatccatt atctgttgca taatcacttt
    17701 gccgtgacct tgaccttggt atttcggacg tactgcaaca tcgataattt gaaatgcggt
    17761 ggcgccgtct ccaatgacac gtcccatacc gatcagttga tggtcgtcat aaatcgtaac
    17821 tgtaaaacac gcattcggca acccaacgcg ggcagcagct tctgattttg cacttagccc
    17881 cgtgatacga cgtagttcac aatagtcggc tggggtcgga atttcatatt ttacttcagt
    17941 tgtcatgaca taacgttcct ttcaatctag tgtggtaaaa attgacgatt ggcttcttta
    18001 aagacatcat tgtgactcga tacgtagcct tcttttggtg ctgaaggatc aatgtactgt
    18061 tttgcactgt ttgccgcatg agccgcatcg ctgaaagcac tcgcgattaa atgtactttt
    18121 gcgggatgtt ggacaatatc gccacaagca taaatccctg gcactgaagt acatgtgttt
    18181 ttctcaccat acacataatc gtcgttcaca gtttgaattg taacatctga atcgtttaaa
    18241 agtgtcagtt cacgttcgaa gccatgacta ataataacct catctacacg atggatggtt
    18301 gtttcccccg tttcaccatt ttcaaggatg acttcgttaa ttttgttcgc atcatccgca
    18361 gtactcttca attgtacaat tttgctattc ggaaactttt ggacatttaa tgaatccaaa
    18421 atgttttgca tcgcttcgtg accagaaata tcttttttgc gataaacgag tttcacactt
    18481 ttcgcataac cggataaatc acgtgcccaa tctaacgcag aattgcctgc tcctgaaata
    18541 agaacgtctt tatttttgaa tttttgatat tgttgcacga cataatgtaa gtttgtcagt
    18601 tcaaatcgtt ctgcaccttc aattttaagt ggtaacggtt tgatgatacc cgcacctatc
    18661 gcaagaatga ttgcacgtga cattaaagac tgaccgtcag ctgtaatgat ttcaaaatga
    18721 tgttcatcat gtttgataat atttgtgact ttcgtttcga gcaaaacttc agggttaaaa
    18781 tgaaggcctt gttgaataat attttttaag atgtcataac aggattgagg tgcaacaccg
    18841 ccaatgtccc aaatgatttt ttcgggataa atttgcattt tgccacctaa ttcgcgttga
    18901 acatctacaa tgcgtacgtc catccctcta aggcctgcat aaaaactcgc atataaacct
    18961 gccgggccac caccgataat tgttacatct ttcatttttt tacgctccct caagttaatt
    19021 tgatgctttc tattatcata taaatgagaa taattatcaa ttgaagtgcc gtaaatgtca
    19081 aaaatatata catagcagaa ttgtggttga tagggtatat aatcaataaa aaacagccaa
    19141 taagcatgac ggttcatact tattgactgt atcactatat tttattcgac atttttcgca
    19201 ttcgtacgtg cacgcaagtc ttgttcgatt tgttcaagac tgcgaccacg tgtttcaggc
    19261 aagaatttta taacgaaaat cattgcgatg ataccaatga ctgcgaagat taagaagact
    19321 tgttgaactt gtaatacatc tgtgagcact gggaagaatt gtgctacgag taaactacca
    19381 attgaaagta cgagtgctgc aatacctgtt gctgcaccac gcgcacgcat tgggaataat
    19441 tctggtaacg ttacccataa tacagggccc catgacacac cgaagaaaat aatgaatgtt
    19501 gttaaacaaa gcagaataat ccaagcggca ctattgaccc cgataagcca aattaatgca
    19561 ctcatgatca gtaatgaagc caccatacca atgttaccaa tgacaagtaa tttttttcgg
    19621 tcaattttgt cgataattga aattgcgaaa atagttacaa gaacatttac aacaccgatg
    19681 ccaactgtgc ttaaaatggc ggttgattca ccaaaacctg ctgttgcgaa aattttaggt
    19741 gcgtagtaaa taatggcatt aatcccaatc aattgttgga gtaatgcaaa aacacttccg
    19801 ataatgattg tcgacaacaa ccaaggcgat ttaagaacag tccaagtgtt atcagcaatt
    19861 tgattgattt tcttcatatt ttcgatttca tgatcgattt ctgaagctgg gtaagttaat
    19921 ttcatcacgt cacgcgctgc tttttcacca cgtttttcaa gtaaccaacg tgggctttca
    19981 ggcatgaaaa taacaccaat catcaaaata acagaaggca ctactgctaa gccaagcatc
    20041 caacgccatc cttcaatagg tgcaaatgca tagttcacaa ggtatgatgc taaaataccg
    20101 attgtgatca ttaattggtt gagtgaactt aatgagccac gtgcgtctgt cggtgcaagc
    20161 tcagacagat aaactggaac aatcgcagta gaaccgccga cagctaaacc gataatgaca
    20221 cgacctaaaa ctaaaatttc catcgttggt gcgagcgcta aaattaatgc accaataata
    20281 aagacgatag agatcataaa gactaaacga cggcgaccta atttttcaga taatgggcca
    20341 cttaacccgg caccgacaat cgcgccgacc aacatggatg aaacaacaag cccttcagta
    20401 tatgcattaa gtgggatgtc atcctttaaa taaagtaatg caccggaaat aacccccatg
    20461 tcatatccgt ataataaacc acctaaagca ccaatgaaga agatcatctt tttatttatt
    20521 ttcattgtgc aacctccaat atttttctgt attcaagtat acgctttcat atggtaatag
    20581 taaattataa aattttgcaa gtttaaagtt ttgtaatcat aaataactcg tctttgcaaa
    20641 atatttgtca actattaatc atatgctttg atacgacaaa gttagactcc cattactttg
    20701 gacgatgttg cttcaaaagt gtgacaggta tcacatttct gaagcaactc atgttatatt
    20761 tttaagcttc aggacgtaaa tcaaccacta tacgacctaa aaagtcatgt ttctctgctt
    20821 ttgctaaata cgttttcaat tcactaaaag ggaccaccgt tttaatgtca tgcaactttg
    20881 caggttttaa atctttagaa agacgtcgcc ataaatgttg tctacgttgc attggaaaag
    20941 cgactgaatc tgcacctaaa agtcggatac cacgtaaaat aaatggatag actgtacttg
    21001 tgaattcagc accacttaaa ttaccgctaa cggcaactgc accgtgacgt tgaatacgtt
    21061 ttaacacttc agttaaagtt tcaccaccga caggatcaat cgccgcctgc cattctgttg
    21121 aagcgagtgc tttgtcagtc acttcatcaa ttctaggaat aaccgtacgt gcacctaacg
    21181 cttttaattg cgcatgatgt tcagtttgac cagaacttgc gataacttta tagccaattg
    21241 catttaacat catgaccgac attacgccga caccacctgt agcaccacgg acgagtaccg
    21301 gaccattagt acttgtaatt ttattgtctt ctaacaattg aatagaaatc gctgctgtaa
    21361 aacctgcagt accaataatc attgcctctt ctaacgttaa gtcttcaggg agatgaacta
    21421 accaatcacc tttcacacgt gcgacttcac taaaaccacc gtcatgattc acaccgaggt
    21481 cataacccgt ggcaatgact ttgtcgcctt ctttaaatga cgggtggtct gaagccatca
    21541 cgacaccagc caaatctatg ccaggtacaa tcggataatt gcgaatgatt ttattattcg
    21601 attttgtagc gagtacatct ttatagttaa tacttgaata atgtacacga attgtgacat
    21661 ccccttcaga caaatcatct aacgtaagct tagtgaaatc tgcagacaat gtgtcttcat
    21721 catgagtcac gcgaaaagct ttaaatgttt ctgtcatatg catgtgcctc ctcaaatttt
    21781 ttcgttcaca ctttaccaaa aacgctcatg aaagacaatt agattgcttt tgctcgttga
    21841 agtgaagtgt ctcgtgtaca ataaaagaaa aagcggggag gcaagacgtt gggatatgaa
    21901 ttaagaaagg taactgttac ggaggtcgcc acgttacaac agataagtaa agatacgttt
    21961 tatgcggcgt atcgcgatga ttatgaacaa gcattatttg acagttactt tgcggaagag
    22021 atgtctataa agaagttaac ggccgaatta gaagatccgg atatgcactt tttcttttta
    22081 tataacgatg atgtaatagt cggttacgtg aaagtgaatg ttggagcggc gcaaacggta
    22141 gcaaaaggga tacagtatgc agaacttcaa cggatttatt tgtatcctga ttatcaaggg
    22201 caaggattgg gacaatggct atttgatttt gtatgtgact ttgtaaaaaa tgtactagga
    22261 aagtccaagc tatggttagg tgtgtgggaa gagaatcgtc cggcacttaa cttttatttg
    22321 aaacaagggc ttgttaaaac aggtgtacac ccatttaaga tgggaaaaca tatcgacgaa
    22381 gattggatta tggagaaaga tttataaaaa ttatttgaaa attttgccgg aaatgtttag
    22441 tattcagtgt gaagtgtata aaaaagtgat aggttttttc tatatcattt actgaatgag
    22501 gaggaagcat catgaaaaga ttattggcaa gcttgatgat tgtaccgtta ttgctcgtag
    22561 catgttctga cgacgaaggt aaggacaaag atcagtcgtc gaacaaagat caaacaacac
    22621 aaaaagataa gaaagcagat caagacaagc aaaaagacaa taaagcgaaa gacagcaaag
    22681 agaaggacaa caaagcaaaa gatacgcaat ctaacgacaa cggtgctgca tcatcagacg
    22741 tcaaccaagg tactaatgat gggcaaagta caactgagtc acaacaaaat caaaatcagg
    22801 cggatcaagg acaatcttca acacaagatc agcaaaataa tgcgacaaat ggcaacggaa
    22861 atggtcaaaa tcaaacgtct caatcatctt cacaatcaca accgaaatat gtcgccccat
    22921 atcaaggaca aaatgtgaca cctgtagctc aaaatattgt acgtcaagaa gttgaccgtc
    22981 aacaagcatt gagacatctt ccgaacttcc aaacatcact cgacagtgca caagcagaag
    23041 taaatcgatt aaatggtcaa aacaatcctt ataatgacta tgcattacaa ggtgatggta
    23101 accgttacag ttacatgttt agttttatca accaatcaca gccgggtaca tatacaatcg
    23161 tgacagtaga tgggactggt catgcgaaaa ttgtagaccc agcgtatcgt caataatgaa
    23221 ttttgaacaa aaagggttag gcacatgagc ggcttaacct tttttatttt ttcaacatat
    23281 gagctgacat gtttgttgcg cttcatgaat aatgcgatag aattttagaa tttagagatt
    23341 tgatttgata gtgaaaagtg aaaaataa
//
LOCUS       DANHOL010000023        23342 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.023, whole genome shotgun sequence.
ACCESSION   DANHOL010000023 DANHOL010000000
VERSION     DANHOL010000023.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 23342)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23342)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23342
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.023"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            322..1875
                     /gene="putP"
                     /locus_tag="PTC08_000642"
     CDS             322..1875
                     /gene="putP"
                     /locus_tag="PTC08_000642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/proline symporter PutP"
                     /protein_id="HDK5682172.1"
                     /translation="MVLFGSTLSNQVNLDWQTYIMIAIYFIILLGIGYYGYKQATSNL
                     SEYMLGGRNIGPWVTALSAGASDMSGWMIMGLPGEVYSTGLSAVWITIGLTLGAYINY
                     LVVAPRLRAHTEIAGDAITLPDFFKNRLDDQSNLIKIISGLIIVVFFTLYTHAGLVSG
                     GKLFDSAFGLDYHVGLILIAVIVILYTFFGGYLAVSITDFFQGVIMLVAMVMVPIVVM
                     LKLNGLDTFHTIAEMKPTNLDLFKGTTVIGIISFFAWGLGYFGQPHILVRFMSIRTVK
                     LFPLTRRIGIAWMIVGLLGAVLVGLLGIAFVPAQGVHIQDPETLFILMSQLLFHPLVG
                     GFLLAAILAAIMSTISSQLLVTSSSLTEDFYKLIRGDKANAAAHEKEFVLVGRISVMI
                     VAVAAIAIAWTPNNTILNLVGNAWAGFGAAFGPLVILSLYWKGLSRTGAISGMVAGAL
                     TVILWIVFAHPYGDVNDFFNLYEIVPGFIVSLVVTILVSNMTQKPGAFVEDDLNQVVK
                     QLNDAKLKN"
     gene            complement(2261..3466)
                     /locus_tag="PTC08_000643"
     CDS             complement(2261..3466)
                     /locus_tag="PTC08_000643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CamS family sex pheromone protein"
                     /protein_id="HDK5682173.1"
                     /translation="MKKSIVLLLGLSLVLSACGPDEDESKSSKEKTEAQQRDHNKVKE
                     IATDKNVQGTDYRTILPFKESQARGLIQENMANSYNGEDFEDGLLNISKEVYPTDEYL
                     YQDGQYLDKDTIRAYLRPKYTKKELDKMSDKEKENKNATANLGLNPSVNGETDEEKIA
                     KKSPAYLSNILEQDFYDNGDTKGKDIEGMTIGLAMNSVYYYQKEKYGETYHEKLDEKE
                     IKKQGRQMAEEMLVRLRENDDLKDIPITFAIYIQSAQEDIIPGRFVSYATAEKKGSKL
                     SDWHQIDQKTVLLPSSEASDLNENLNANFKDFNSALQSYFSNFTQAVGKAEFKNKKVQ
                     NLTVDLPIDYYGKAELIGITQYVTQLAEKDFKSVDQYEIHIKDGSQPRALIRKTKEEK
                     SPQVHIYQN"
     gene            complement(3478..5481)
                     /gene="ligA"
                     /locus_tag="PTC08_000644"
     CDS             complement(3478..5481)
                     /gene="ligA"
                     /locus_tag="PTC08_000644"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HDK5682174.1"
                     /translation="MSSIAQRVEILHKLLHQYNYEYHVQDNPSVPDSEYDKLLHELID
                     IETKHPELKTSDSPTVRVGGEAQSSFEKVNHDTPMLSLSNAFNEADLRKFDQRVRDAV
                     GEVEYMCELKIDGLAVSLKYVDGKLVQGLTRGDGTTGEDITENLKTIYAIPLTLDKKI
                     SFEVRGEAYMPRQSFLKLNEAKAARDEQPFANPRNAAAGSLRQLDSKLAAARKLDIFL
                     YSINDFTELDASSQSEALDELDELGFKTNHEREKVKTIDEVLEYIKKWTNQREQLPYD
                     IDGIVIKVNHLEHQEEMGFTQKSPRWAIAYKFPAEEVITELLDIELSIGRTGVVTPTA
                     ILEPVRVAGTTVSRASLHNEDLIHEKDIRIGDSVVIKKAGDIIPEVVRVILDRRPEGA
                     ETYHMPTHCPSCDHELVRIEGEVALRCINPKCQAQLVEGLIHFVSRQAMNIDGLGTKI
                     IEQLYTHALIKDVADIFYLTKEDLLPLERMGEKKAQKLIDAIETSKARSLENLLFGLG
                     IRHLGVKASQVLAEKYETMDRLLTVTEDELVEIYDVGEKLAQSLVTYLENEDIRALIE
                     KLQSKGVNMTFKGQKLSQIEGHPEFAGKTIVLTGKLQQMTRNEATNWLKLQGAKVTSS
                     VTKSTDLVIAGEDAGSKLTKAQSLGTMIWTEQDFIDKQNEINE"
     gene            complement(5485..7680)
                     /gene="pcrA"
                     /locus_tag="PTC08_000645"
     CDS             complement(5485..7680)
                     /gene="pcrA"
                     /locus_tag="PTC08_000645"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase PcrA"
                     /protein_id="HDK5682175.1"
                     /translation="MNPLVANMNKEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYL
                     LDEKDVSPYNILAITFTNKAAKEMKERVQALVGEEAEVIWMSTFHSMCVRILRRDADR
                     IGIERNFTIIDPTDQKSVIKDVLKRENIDPKKYEPRIFIGEISKLKNDLLTPAKAEAE
                     ADDFYSRMVATVYKGYQQQLVRNQALDFDDLIMTTIRLFERVPDVLDFYQNKFQYIHV
                     DEYQDTNTAQYTLVNMLAQKFKNLCVVGDSDQSIYGWRGANIHNILSFEKDYPNARTI
                     FLEQNYRSTKTILQAANEVIRHNTERKPKGLWTANQQGEKIHYYEAMSERDETEYVVR
                     EIFKQQKKGKRYKDMAVLYRTNAQSRVLEETFLKSNIPYVMVGGQKFYDRKEIKDLLS
                     YLRLIANSADDISLQRIINVPKRGIGPSSVEKIATYAVDHELTMFDALAEVDFIGLSK
                     KVTQAAAEFYQLMSNLMQEQEFLEVSEIVDEVLEKSGYREMLEREQSIESRSRLENID
                     EFMSVPVDYEKNTPLEEQSLINFLTDLSLVADVDGANLEDGVTLMTMHSAKGLEFPIV
                     FIIGMEESIFPHIRAIQSESDHEMEEERRISYVAITRAEEELYLSHATSRTLFGRPQS
                     NARSRFLNEIPEELLDLPERQYATTIGSRKRQPAKRGFSQRAVKNSASSSTASNWKVG
                     DKVMHKSWGEGMVSNVNDKNGSIELDIIFKSEGPKRLLAQFAPIEKKED"
     gene            complement(7680..8369)
                     /locus_tag="PTC08_000646"
     CDS             complement(7680..8369)
                     /locus_tag="PTC08_000646"
                     /EC_number="2.5.1.n9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011275351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heptaprenylglyceryl phosphate synthase"
                     /protein_id="HDK5682176.1"
                     /translation="MYDIKEWRHIFKLDPAKEISDADLEQICMSNTDAIMIGGTDDVT
                     EDNVIHLMSRVRRYPLPLALEISNLESTMPGFDFYFVPTVLNSTDVTYHNGLLHSALK
                     AYGHMIDFDEMVFEGYVVLNPESKVATKTSAQATLDESDVVAYAQMAESFYRLPVLYL
                     EYSGQYGNPEIVRAAKQSLNHTHLFYGGGIDGVDKAMEMAQIADTIIVGNVIYEDLKA
                     ALKTTKIKERT"
     gene            complement(9328..9630)
                     /locus_tag="PTC08_000647"
     CDS             complement(9328..9630)
                     /locus_tag="PTC08_000647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682177.1"
                     /translation="MQIEKLRGKALDELFDAVLTLETREECYQFFDDLCTVNELQSLS
                     QRLQVAKMIKQGYTYATIEKESGASTATISRVKRSLQWGNDAYTMILDRMNIETKL"
     gene            complement(9698..10993)
                     /gene="purB"
                     /locus_tag="PTC08_000648"
     CDS             complement(9698..10993)
                     /gene="purB"
                     /locus_tag="PTC08_000648"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011275349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HDK5682178.1"
                     /translation="MIERYSREEMAQIWTDQNRYEAWLEVEILASEAWSELGYIPKED
                     VKKIRQHARVDVDRAKEIELETRHDVVAFTRQVSETLGEERKWVHYGLTSTDVVDTAL
                     SYQIKQANDILEQDIQRFIDVLAAKAKKYKTTLMMGRTHGVHAEPTTFGLKMALWYAE
                     MQRNMERFKNVRTEIEVGKMSGAVGTFANIPPEIEAYVCKHLGIGTAPISTQTLQRDR
                     HACYIATLSLIATSLEKFAVEVRNLQKTETREVEEAFAKGQKGSSAMPHKRNPIGSEN
                     ITGIARVIRGYLTTAYENVALWHERDISHSSAERIMLPDVTIALDYALNRFTNIIDRL
                     TVYEENMTENMNKTFGLIYSQRVLLALIDKGMVREEAYDTVQPKAMESWQTKTPFREL
                     VEADTKITDKLSKEELDACFDPRHHLNQVDTIFKRVGLE"
     gene            complement(11416..11604)
                     /locus_tag="PTC08_000649"
     CDS             complement(11416..11604)
                     /locus_tag="PTC08_000649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NETI motif-containing protein"
                     /protein_id="HDK5682179.1"
                     /translation="MKFKVEPDETIQDCLARMKAAGYMPVKRFEKPVFIENEHGDIEV
                     LRQEIEFTGKKIPDAFES"
     gene            complement(11594..12163)
                     /locus_tag="PTC08_000650"
     CDS             complement(11594..12163)
                     /locus_tag="PTC08_000650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2179 domain-containing protein"
                     /protein_id="HDK5682180.1"
                     /translation="MSLINDNPWLMLIAIFVINVAYVTALTMRVILTLKGYRYVAALV
                     SFVEVFVYIIGLGLVMSSLDQFQNIIAYALGFSVGIIVGMKIEEKLALGYSVVNVTTA
                     DYELDLPRQLRALGYGVTHFGAHGRDGDRLVMQILTPRRYELKLMDTIKQLDPKAFII
                     AYEPRNIHGGFWVKGVRSKKVKAYDTDEI"
     gene            complement(12225..13055)
                     /gene="nadE"
                     /locus_tag="PTC08_000651"
     CDS             complement(12225..13055)
                     /gene="nadE"
                     /locus_tag="PTC08_000651"
                     /EC_number="6.3.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002464730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonia-dependent NAD(+) synthetase"
                     /protein_id="HDK5682181.1"
                     /translation="MSEMQAMIVEEMKVKPSIDSAETIKEMQHFIEQYLHAHTFVKTL
                     VLGISGGQDSTLAGKLVQLAVENMRNASGRDVQFIAVKLPYGVQKDADEVEDALNFIQ
                     PDRIVTVNIKPAVDQSVQSLQEAGIALSDFHKGNEKARERMKVQYAIAANTSGIVVGT
                     DHSAENITGFFTKHGDGAADIAPLFGLNKRQGRQLLQYLGAPAHLYEKVPTADLEDDK
                     PQLPDEEALGVTYEAIDNYLEGKGVSPEDAAVIERHYVRNAHKRELAYTRFSWPKSDK
                     "
     gene            complement(13048..14523)
                     /locus_tag="PTC08_000652"
     CDS             complement(13048..14523)
                     /locus_tag="PTC08_000652"
                     /EC_number="6.3.4.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500623.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate phosphoribosyltransferase"
                     /protein_id="HDK5682182.1"
                     /translation="MYQYKDDSFMLHNDLYQINMAESYWFDGIHERKAVFDLYFRNMP
                     FGSGYAVFNGLQRVIQLIQNLHFSITDIEYLKSIGYQDDFLNYLADLKFTGNIRSMKE
                     GELCFNNEPLMRIEAPLIQAQLIETALLNIINFQTLISTKASIIKQVAVDDVLMEFGT
                     RRAHEFDAALWGARAAIIGGFDSTSNVRAGKLFNIPVSGTHAHAFVQTYGDEYTAFKK
                     YAERHRNCVFLVDTFHTLKSGVPNAIRVAKELGDRINFIGIRLDSGDIAYLSKKARQM
                     LDEAGFKDAKIIASNDLDEQTISSLKAQGAAVDSWGVGTKLITAYQQPALGAVYKLVA
                     VENNEGKLVDRIKLSNNAEKVTTPGKKKVYRIINTKTNKSEGDYITLEHEDPNEEKVL
                     KMFHPIHTYKMKRIKNFKAVDLHHDIFKDGQLVYDCPTEMEAKAYLKSNLEYLWEENK
                     RYLNPEEYPVDLSTLCWENKQKRIFEVAENVKEMEEKYDHE"
     gene            15155..16225
                     /locus_tag="PTC08_000653"
     CDS             15155..16225
                     /locus_tag="PTC08_000653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitric oxide synthase oxygenase"
                     /protein_id="HDK5682183.1"
                     /translation="MLKEAQAFIKQMYDELDLSTTERDARLAEIEQAIHTTGTYQHTT
                     DELTYGARVAWRHSNRCIGRLFWESLKVIDARDIKEETPFLESIESHIKTATNDGRIK
                     PCITIYAQSDEEGPQIWNNQLIRYAGYDDKGDPSEKSITKLAQHLGWTGAHTDFDVLP
                     LIYQLPNQPVKYFDYPSDWIMEVPITHDQFPNVSALNLKWYAVPIISNMDLKIGGITY
                     PTAPFNGWYMVTEIAVRNFTDTYRYNLLETFATAMGYTDLRNATFNKDRVLVEINDAV
                     LQSFKKAGVSMVDHLTASKQFEKFETAEARKGRTVTGKWSWLAPPLSPTLTTNYHHGF
                     SNETRQPNFFYKKNTSTGCPFH"
     gene            16269..17072
                     /locus_tag="PTC08_000654"
     CDS             16269..17072
                     /locus_tag="PTC08_000654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydratase"
                     /protein_id="HDK5682184.1"
                     /translation="MTLFYLGPKGTFSYLAALKLQSQTNQKEQLVERSNLYEVMSSLQ
                     KDPSASAIVPIENSIEGTINVIADSLIEQNFVIIEEIFLDIAFALYGLPNQSFKDIQR
                     VYSISPAISQTQKFIHEQQFDYDYTTSTVASLEKIDATTGAIAPLGSGEMYGYEALAT
                     HIEDYPHNMTRFLVLKHASEVTNQSGSECLLVITPTEDKPGLLASILNTFAMFQVNLK
                     WIESRPLKTQLGMYRFFVQAECPDTTVLNKILTILETLDFKIKNLGRFH"
     gene            complement(17125..18231)
                     /locus_tag="PTC08_000655"
     CDS             complement(17125..18231)
                     /locus_tag="PTC08_000655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pectate lyase"
                     /protein_id="HDK5682185.1"
                     /translation="MKINVLDFGAKGQNRLLDTWGIQRALNQAQKGPITVYIPSGTYH
                     IAKALKIYEGTTLILDPDAQMLRTGKDALLKNGTSLKRYYGYNGNSHIKIQGGIWNMN
                     GVHYPYNNTAMCLGHAQEIEVCHLTIKNVVGGHGIDACGLDGLHVHHCNFVGFYDVTG
                     ERWFSEAVQLDLFVEGAFPKFGVNDGTITKNAVIEHCYFGNSFEGDMQSWNRAIGSHA
                     TRFDRFYENIIIQHNVFEDTQDYALTPLKGKNIFIQHNLFLNCTGGIRYLGVHQGKNA
                     VTLEGNHEGKQGGDGLYVMHNDFVNNGAKDVLHIRSHHDAPHTDVNVIGNTFMGGHQV
                     AQLTGVHDIAILNNEHSPQWNQKHVTAFITDKSE"
     gene            18312..18863
                     /locus_tag="PTC08_000656"
     CDS             18312..18863
                     /locus_tag="PTC08_000656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017464994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine hydrolase"
                     /protein_id="HDK5682186.1"
                     /translation="MSNKALVVVDYSYDFVADDGKLTCGAAGQAIEPYIVERIKAYHE
                     AQENIFFMMDLHFEDDPYHPETKCFPPHNIKGTKGRELYGEVKALYDTIKDSAHVYFI
                     DKRRYDSFYGTPLDSMLRERQVDTIEIVGVCTDICVLHTAISAYNLNYQLIIPKKGVA
                     TFNEAGHQWALTHFKTTLGAQVE"
     gene            18921..19847
                     /locus_tag="PTC08_000657"
     CDS             18921..19847
                     /locus_tag="PTC08_000657"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001830428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="manganese-dependent inorganic pyrophosphatase"
                     /protein_id="HDK5682187.1"
                     /translation="MMTTYIFGHQNPDTDAISSAIIMADFEQQHGNKEAKAFRIGELG
                     PETQYALDYFNVEVPEFLTDDLTGQDVILVDHNEFQQSAHNIEKANIRHVIDHHRIAN
                     FETAGPLYYRSEPVGCTATILYKMYNERNYEIRPEIAGLMVSAIISDSLLFKSPTCTQ
                     QDIDAAQALAKIANVDLQTYGLEMLKAGASTTNKTEDELLNTDAKSFSMGDYTVRIAQ
                     VNSVDVEEVFARQEALENAMNKASAENSYDTFILVVTDIINSDSKILVVGAEQEKIAQ
                     AFNTTLDNHTAFLPGVVSRKKQIVPPITEALS"
     gene            19877..20158
                     /locus_tag="PTC08_000658"
     CDS             19877..20158
                     /locus_tag="PTC08_000658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HDK5682188.1"
                     /translation="MSENVKAGHHKFYYGETENRPDAQILFSYYDTNVIDVYSTYVSP
                     SLRGGGVAKQLFDAVIEKAKNENLKIIPSCSYVAHQFERDASLAPYRAE"
     gene            20428..21807
                     /locus_tag="PTC08_000659"
     CDS             20428..21807
                     /locus_tag="PTC08_000659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase"
                     /protein_id="HDK5682189.1"
                     /translation="MNPFHTQFNATQRYFQSHATRSLKSRKKALKQLAKQIKLHEQEI
                     FDALKQDLNKNEVEAFGTEIGYTLNNIRYIRKNLSKWAKSQAVDTPFFLFPAKSFIVN
                     EPLGTVLIIGPFNYPFQLIFEPLIGAIAAGNTAIVKPSELTPNVAAVIEKIITETFDP
                     EYVAVAQGGAETIQSLLELPFDHIFFTGSQKVGKIVYEAAAKQLIPVTLELGGKSPTI
                     IDRTANLKVASERICFGKFMNAGQTCVAPDYVLIDETIKADFIEALTTTIREFYGTHP
                     IDSEDLGRIVNDRHFDRLAQLLTAHQSNIIVGGETAAEQRYIAPTLLDRVQADDPIMQ
                     EEIFGPILPILTYRDFDEAIAYVQSKPKPLSLYLFSEDENATTRVLNELSFGSGAIND
                     TILQLANPKLPFGGVGASGIGRYHGKYSFETFSHQKPYIFKTTKLETGLLFPPYKGKL
                     GYMKKLFKK"
     gene            complement(21914..22963)
                     /locus_tag="PTC08_000660"
     CDS             complement(21914..22963)
                     /locus_tag="PTC08_000660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactonase family protein"
                     /protein_id="HDK5682190.1"
                     /translation="MVKGYIGSYTKKDGKGIYRFELDEQAGRIETVETGYELNASTYL
                     VQHEDTLIGITKNDKNAGLATFKIKQDGSLEKTGESLESFKGSGCYVAVSPDGKYVFE
                     AVYGDGVARIYELDAANNRITRLIEEVIHEYPHGPNVDRQEQSHVHYLDVTPEHKYVV
                     AVDLGADLLVTYHYGDQGLEVAHRTALEPGDGPRHIAYHKTGRYAYVVNELSNTVVVM
                     AYEDGSFTELERHLTIPEDFLLPTKLAAVRLSHDQRFLYVSNRGHDSIAIFKLLEDGA
                     KLELVDIVSSGGAFPRDFNITEDDAYLVVAHQEENSEVVVFKRDLDTGRLTKTDDQQT
                     APEGVCVKFLDETHL"
     gene            complement(23182..>23342)
                     /locus_tag="PTC08_000661"
     CDS             complement(23182..>23342)
                     /locus_tag="PTC08_000661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682191.1"
                     /translation="KGLFKFLFVSTLVITGVVGVGLAVLTYVFKKDFEEIESKTKEII
                     ADIEANQG"
BASE COUNT         6780 a         4836 c         4033 g         7693 t
ORIGIN      
        1 ctataaattg taccaaattt cagcataaaa atctaaaata tttcaaacaa ggcgcatcac
       61 gacacaatgt tgacacgaac gaacacggac gacgctatca tttttcacaa gtacgccgcc
      121 tcactatatg ttttatttat atttataaca ttaaacttaa taattatcga tattcaactt
      181 ctctctgctt atgcgcctaa atcgctattt ctcttgtgat gacaaggtta aattacacat
      241 aaactgtgaa atacttcttt cctttcatat acaattctgt ataataatct tatgcaagtg
      301 aaaacaaaag gggagatcaa tatggtttta tttggttcta ctttgtccaa tcaagtgaat
      361 ctcgattggc aaacgtatat tatgattgcc atttatttca ttatcttact cggcattggt
      421 tactatggct ataaacaagc aacgagtaac ttgagtgagt atatgttagg tggccgtaac
      481 attggtccat gggtaactgc cctctctgca ggtgcttctg atatgagtgg ttggatgatt
      541 atgggattac ctggtgaagt atattcaact gggttatctg ccgtatggat tacgatcggt
      601 ctaacactcg gtgcttacat taactattta gttgttgcac caagacttcg tgcacataca
      661 gaaattgccg gtgatgcgat tacgttacca gatttcttta aaaaccgttt agatgatcag
      721 tcgaatttaa ttaaaataat ttccggctta atcattgtcg tattctttac attgtatacg
      781 catgctggtt tagtatcagg tggtaagtta ttcgacagtg cattcggatt agattatcat
      841 gtcggcttaa ttttaattgc ggttatcgtt attctctaca cgtttttcgg tgggtatctc
      901 gctgtttcga tcactgactt ttttcaaggg gtcattatgt tagtggcaat ggtcatggta
      961 cctattgttg tgatgttaaa gttaaacggt ttagacacat tccatacgat tgcagaaatg
     1021 aaaccgacca atttagattt atttaaaggg acaaccgtga ttgggattat ttcattcttt
     1081 gcatggggac ttgggtattt tggccaacct cacattcttg ttcgtttcat gtcgattcgt
     1141 actgtgaaat tattccctct tacacgtcgt attgggattg catggatgat tgtcggattg
     1201 ttaggtgctg tgttagtcgg gctactcggt atcgcgttcg ttccagcaca aggtgttcac
     1261 attcaagacc cagaaacatt atttattttg atgagtcagt tgctattcca tccattagtc
     1321 ggtggtttct tgcttgcagc gattttagca gcgattatga gcaccatttc ttctcaatta
     1381 ctcgttacgt ctagttcatt aacagaagac ttttacaaac tgattcgtgg tgacaaagcc
     1441 aatgccgctg cacatgagaa agaatttgtg ttagtaggac gtatttctgt aatgattgta
     1501 gcggttgctg ctattgccat cgcttggaca ccgaacaaca cgattttaaa cttagtcggt
     1561 aatgcatggg caggttttgg tgcggctttt ggcccgttag ttatactttc attgtattgg
     1621 aaagggttat cacgtacagg ggcaataagc gggatggttg ctggtgcgtt aactgtgatt
     1681 ttgtggattg tatttgcgca tccatacggt gacgtgaacg atttctttaa cttatacgaa
     1741 attgttccag gctttattgt gagtttagtc gttactatcc tggtttcaaa tatgacacaa
     1801 aaaccgggtg cctttgtaga agacgatttg aatcaagtcg tcaagcaatt gaatgacgca
     1861 aaattaaaaa attaaaagaa acgatacaag ttttacaatc aattgcttat tgtgattgtc
     1921 atccatgata tgattatact gggagactgg gataatgccc ggtctttttt ttaggttatg
     1981 ctgtacaaac tgcggacttt caatgttttt tacgcttttt ctcgaaatat agaatcgaca
     2041 tgcattgatg tagggcgagt catcatatag agttatctga aaaaaaaagt acttacaaat
     2101 gtgatgacga attgatatta cacttttaac taccatgttt aaaaagaata actactttga
     2161 ttctcaaaat gactgcctta aaaaaacgac cactgttacc ttagagtcat atgaactcgc
     2221 ggtatcgtgg tcgttttcct cattttattc accattcata ttagttttga taaatatgta
     2281 cttgtggtga cttttcttct ttcgttttac gtataagcgc acgtggctga cttccatctt
     2341 taatatgaat ctcatattga tccacagatt taaagtcttt ttcagcgagc tgtgtcacat
     2401 attgcgtaat cccgattaac tccgctttac cataataatc aattggtaaa tcaacagtta
     2461 aattttgtac ttttttgttt ttaaactctg ctttaccaac agcttgtgta aagttagaga
     2521 agtaagattg taatgcactg ttaaagtctt tgaagttcgc attgagattt tcattcaaat
     2581 ctgatgcctc acttgacggt aacaacacag tcttttgatc aatttgatgc cagtctgaca
     2641 gtttagaccc ttttttctcg gctgtcgcat aactcacaaa acgacccgga ataatgtcct
     2701 cttgtgctga ctgaatgtat atcgcaaagg tgattggaat atctttcaaa tcatcatttt
     2761 ctcttaaacg cactaacatt tcttcagcca tttgtcggcc ttgcttttta atttcttttt
     2821 catcgagttt ttcatgatat gtttcgccat atttttcttt ttgatagtaa tacacactat
     2881 tcattgctaa acctattgtc ataccttcaa tatctttacc tttagtgtca ccattatcgt
     2941 aaaaatcttg ttctaaaata ttagataaat aagcaggaga ttttttagcg attttttctt
     3001 catctgtttc gccattcaca gatggattta atcctaagtt cgctgtcgca tttttattct
     3061 ctttttcttt gtcgctcatt ttatcaagtt cttttttcgt atatttcgga cgcaggtaag
     3121 ctctaatcgt gtctttatct aaatattgac catcttgata caagtattca tcagttggat
     3181 acacttcttt actgatattg agtaggccat cttcaaaatc ttcaccgtta tagctattcg
     3241 ccatattttc ttgaattaat ccacgtgcct gactttcttt aaatggcaaa attgttcgat
     3301 aatctgttcc ttgcacattt ttatctgttg cgatttcttt tactttattg tggtctcgtt
     3361 gttgcgcttc cgttttttct ttcgaggact ttgattcatc ttcatctgga ccacaagctg
     3421 ataatacaag tgataaacct aaaagaagta ctattgactt tttcatcgcc tatcccctta
     3481 ctcattaatt tcattttgct tatcaataaa atcttgttct gtccaaatca ttgtaccaag
     3541 tgattgcgct tttgttaatt ttgaacctgc atcttcacct gcaatgacaa gatctgtgga
     3601 cttcgttacg ctacttgtta cttttgcacc ttgtagtttc aaccaattcg ttgcctcatt
     3661 acgtgtcatc tgttgaagtt tacctgttaa gacgattgtt ttacctgcaa attctggatg
     3721 gccttcaatt tgcgataatt tttgcccttt aaacgtcata ttgacacctt ttgattgtaa
     3781 cttttcaatc agtgcgcgaa tgtcttcatt ttctaaatac gtcactaacg attgcgctaa
     3841 cttttcaccg acgtcataaa tttcaactaa ttcatcttca gtgactgtta atagtcggtc
     3901 catcgtttcg tatttttctg ctagtacttg actcgcttta acacctaaat gacgaatacc
     3961 cagtccaaat aataagtttt cgagggagcg tgcttttgaa gtttcaatcg catcaattaa
     4021 cttttgcgct ttcttttcac ccatacgttc taacggtaat aaatcttctt tcgtcaagta
     4081 gaaaatgtca gctacatctt taatcaatgc gtgtgtatac aattgttcaa ttattttcgt
     4141 acctaagccg tcaatattca tcgcttgtcg agatacgaaa tgaattaaac cttcaacgag
     4201 ctgtgcctga cattttgggt tgatacagcg gagtgccact tcgccttcaa tccgtacaag
     4261 ttcatgatca cagcttggac aatgtgtcgg catgtgatac gtctcggcac cttctggacg
     4321 acgatctaaa atgacacgca cgacttccgg aatgatatct cctgcttttt ttatgacgac
     4381 actatcacca atacgaatgt ctttctcatg aattaagtct tcgttatgta acgacgcacg
     4441 agaaacggtt gtgcctgcca cacgtacggg ttcgagtatc gcagttggtg tcactacccc
     4501 tgtacgacca atactcaact caatatctaa cagttctgta atgacttctt cagcaggaaa
     4561 cttgtatgca atcgcccatc tcggtgattt ttgtgtaaag cccatctcct cttgatgctc
     4621 aagatgattc actttaatga caattccatc aatatcataa ggtaattgtt cacgctgatt
     4681 tgtccatttt ttaatatatt ccagcacttc atcaatcgtt tttacttttt cacgctcatg
     4741 gttcgtttta aaaccaagtt cgtccagttc atctaatgct tcactttgag atgacgcatc
     4801 aagttctgta aagtcattaa tactgtataa aaagatgtcc aattttcgag ctgctgcaag
     4861 ttttgaatcg agttggcgta acgaccctgc agcggcattt ctcggattgg caaacggttg
     4921 ttcatcacgc gccgctttcg cctcattcaa ctttaaaaat gattgacgcg gcatgtaagc
     4981 ctcaccacgc acttcaaagg aaatcttttt gtctaaagta agtgggatcg cataaatcgt
     5041 ctttaaattt tcagtaatgt cttcacctgt tgtgccgtca ccgcgtgtta agccttgaac
     5101 gagctttcca tcgacatatt ttaatgatac ggctaaacca tcaattttca attcacacat
     5161 atattcaact tcaccgactg catcgcgcac acgttgatcg aactttctta aatccgcttc
     5221 attaaatgcg ttagataagc ttaacatcgg agtatcatga ttgacctttt caaacgatga
     5281 ctgtgcctcg ccgcctacac gtacagtagg tgaatccgaa gttttcagtt caggatgttt
     5341 tgtctcaata tcaatcaatt catgtaataa tttgtcgtat tcactatctg gaacacttgg
     5401 attgtcttga acgtggtatt catagttgta ttgatgcaat aatttgtgca atatttcaac
     5461 acgttgagct atagatgaca tcctttaatc ctccttcttt tcaataggcg caaattgagc
     5521 aagtaaacgt ttaggtcctt cagatttgaa aataatatct aactcgattg agccattttt
     5581 atcattgacg ttcgaaacca tgccttctcc ccatgattta tgcatcactt tatcgccgac
     5641 tttccaattt gacgctgttg atgatgaagc tgaatttttc accgcacgtt gactaaagcc
     5701 tcgtttcgcc ggttgacgtt ttctcgaacc aatcgtcgtt gcatattgac gttctggtaa
     5761 atcaagcagt tcttctggaa tttcatttaa aaaacgtgaa cgcgcattgc tttgcggacg
     5821 tccaaataac gtacgtgatg tcgcatgtga taagtaaagc tcttcttcag cacgcgtaat
     5881 ggcaacataa ctgatgcgtc gttcttcttc catttcgtga tcactctcac tttgaattgc
     5941 acgaatgtgc gggaaaatgg attcttccat accgataata aatacaattg gaaactctag
     6001 ccctttcgct gagtgcatcg tcattaacgt cacaccatct tctaagttcg ctccgtcgac
     6061 atccgccact aatgataagt ccgttaaaaa attaatcagc gactgctcct ctaaaggtgt
     6121 gttcttttca taatcgacag gtacagacat aaattcatca atattttcta aacggctacg
     6181 tgattctatt gattgttcac gctctaacat ttcacgatac cctgattttt cgagcacttc
     6241 atcaacaatt tctgaaacct ctaaaaattc ttgttcttgc attaagttcg acatcaattg
     6301 ataaaattct gccgccgctt gtgttacctt ttttgataac ccgatgaagt cgacttctgc
     6361 caatgcatca aacattgtca attcatgatc tacagcatag gttgctattt tttcaactga
     6421 agacggtcct ataccacgct ttggcacatt aataatacgt tgtaaactga tatcatcggc
     6481 actattcgca attaaacgca aataacttag taagtcttta atctctttac gatcatagaa
     6541 cttttgaccg ccgaccatga cataaggaat gttggatttc aaaaatgttt cctcaagtac
     6601 acgtgattgt gcgtttgttc gataaagtac cgccatatct ttataacgtt tacccttttt
     6661 ttgttgttta aaaatttctc tcacgacata ttcagtttca tcacgctcac tcatcgcttc
     6721 ataataatga attttttcac cttgctgatt ggcagtccat agtcctttag gtttacgttc
     6781 agtattatga cgaataacct cgttagccgc ttgtaaaatc gtctttgtcg aacgatagtt
     6841 ttgctctaaa aagattgtac gtgcattcgg ataatctttt tcaaacgata aaatattgtg
     6901 aatgtttgcg ccacgccaac cgtaaataga ctggtctgaa tcccctacaa cacataggtt
     6961 tttaaacttt tgcgctaaca tattcaccaa tgtatattgt gctgtgttcg tatcttgata
     7021 ttcatctaca tggatatatt ggaatttgtt ttgataaaaa tctaacacgt caggcacacg
     7081 ttcaaacaat cgaattgtcg tcataatcaa atcatcgaaa tctaatgctt ggttacgaac
     7141 aagctgttgt tgatagccct tgtataccgt agcgaccata cgtgaataaa agtcatctgc
     7201 ttctgcctca gcttttgcag gtgtcaataa atcgttttta agtttactga tttctccaat
     7261 aaaaattctc ggttcatact ttttcgggtc gatattttct cgttttaaaa catccttaat
     7321 gactgacttt tggtcggtcg gatcgattat cgtaaagttg cgttcaatac cgatacgatc
     7381 agcgtcacgt cgcaaaatgc gcacacacat agagtgaaat gttgacatcc aaatcacttc
     7441 tgcctcttca cctacaagtg cttgcacacg ttctttcatt tcctttgccg ctttattcgt
     7501 aaaagtaatc gctaagatat tgtatggaga tacatctttt tcatctaata aataggcaat
     7561 tcgatgcgtg agtactctcg ttttaccaga acctgcacct gccataatta aaagcggtcc
     7621 ctcagtcgtg cgcaccgctt cactctgttc tttattcata tttgcaacga gtggattcat
     7681 tatgttctct cctttatttt cgtcgtttta agtgctgctt ttaaatcttc ataaatcaca
     7741 ttacctacaa taatcgtatc tgctatttgt gccatttcca tcgctttatc tacgccatca
     7801 attcccccgc cataaaacaa atgcgtatgg ttaagcgatt gtttcgctgc acggacgatt
     7861 tcaggattgc cgtattgccc actgtattct aaatagagca ctggcaaacg ataaaacgat
     7921 tcagccattt gcgcataagc cacgacatct gattcatcta atgtggcctg tgcacttgtc
     7981 tttgtcgcga ccttactttc aggattcaac acgacataac cttcaaacac catttcatca
     8041 aaatcaatca tgtgtccata ggctttaagc gcactatgta ataatccgtt atggtatgtc
     8101 acatctgtac tattcaatac tgtcggcaca aaataaaaat caaatcctgg catcgtactc
     8161 tcaagatttg aaatttctaa ggctaacggt aatggataac gacgaacgcg actcattaaa
     8221 tgaatgacat tatcttcagt gacatcatct gtgcccccaa tcataatggc gtccgtattt
     8281 gacatacaaa tctgttctaa atcggcgtct gaaatctctt tagcaggatc aagtttaaag
     8341 atatgacgcc attccttgat atcatacatc gttggtgact cctttaattt tcgtaactca
     8401 tattatagca cttttggtgg ttgatatcta agttcatttg atgattgtgc ttactttttt
     8461 tgaacatgtc atatgcatgc attccttttt gaacatgtca cttgcatacg ctccttttga
     8521 acacttcact tgcatacgct ccttttgaac atttcacttg catacgctcc ttttgaacat
     8581 gtcacttgca tactattgcc gtcttggact cgcgttccca ggggctgata cttcaactaa
     8641 ccaacgcttt gattttacgg tgacaattgt tgtaagcgtt ggtggatttt ccggatcagc
     8701 tgttccctcg ggagtctcgt ccatccggca atctcgcatg aacagaagca aaggaggaga
     8761 gcaatgtcat gcatctcact cagttaacgt tatttagata gctactgcgt ttaatatgaa
     8821 catgtgggta tatggttcaa atgaaagaaa cggttcagac tttggtcatg gttttcacgt
     8881 taattaacca cttcgcaaaa atgaatgcta tcatcaacca aagtgcatct gctgactttt
     8941 tatcatgttc ttccaactgt cagacagcca cttaaaagat aaccattccg tgattcaaaa
     9001 gtgctttatt tgtatttttt gtagtgtgat ttgaacgcac tgtttcattt gatactctcg
     9061 cacgaaaatt gagtggtgcg tgtgcattgc tcaaataaaa gaaacggttc agactttggt
     9121 catggttttc acgttaatta accacttcgc aaaaatgaat gctatcatca accaaagtgc
     9181 atctgctgac tttttatcaa taagagacgt ccttttcact tcaacgcggt atgttaactg
     9241 cctcgaaaat aaaagacttc tttcgctatt cactttatta aaagtcaatg ttgaaagaag
     9301 tctcttcatt ttacttattt cattcagtta caatttagtt tcaatattca tacggtctaa
     9361 aatcattgtg taggcatcat ttccccattg taaagaacgt ttaacgcgag aaattgtagc
     9421 cgtcgatgca cctgattctt tttcaatcgt tgcataagtg taaccttgct tgatcatctt
     9481 cgcaacttga aggcgttgtg ataaagattg taactcattc actgtacata aatcatcaaa
     9541 aaattgataa cattcttcac gcgtctctaa agttaaaact gcatcgaata actcatctaa
     9601 agcttttccg cgtaattttt ctatttgcat gcgaacaacc cctatattca taatctatga
     9661 ctattttaac ggattaatag attaaagtat agtgaaatta ttctaaaccg actcttttaa
     9721 atattgtatc aacttggttc aagtgatgtc tagggtcaaa acaagcatcc agttcttctt
     9781 ttgaaagctt atctgtaatt ttcgtgtccg cttctacaag ttctctaaat ggcgttttcg
     9841 tttgccaaga ttccattgct tttggttgta ctgtatcata agcttcttca cggaccatac
     9901 ctttatcaat aagcgcaagc aacacacgtt gtgaataaat cagaccaaac gttttattca
     9961 tattctcagt catgttttct tcataaactg ttaaacgatc aataatattt gtgaaacggt
    10021 ttaatgcata atctaatgca atcgttacat ccggcaacat aatacgttca gctgaagaat
    10081 gtgaaatatc gcgctcgtgc cataatgcga cattttcata tgcagtcgtt aagtaaccgc
    10141 gaatcacacg cgcgatacct gtaatgtttt ccgaaccgat tggattacgt ttatgcggca
    10201 ttgctgaaga gcctttttgc cctttagcaa atgcttcttc cacttcacgc gtttctgttt
    10261 tttgaagatt acgcacttcg acagcaaatt tttcaagaga agttgcaatt aagcttaacg
    10321 tcgcaatgta gcatgcatga cgatcacgtt gtaacgtttg tgtagaaatc ggtgcagtac
    10381 caatacctaa atgtttacaa acataggctt caatttcagg cggaatgttt gcaaacgtcc
    10441 ccactgcacc actcatttta ccgacttcga tttcagttct tacatttttg aaacgttcca
    10501 tgttacgttg catttctgca taccataacg ccattttcaa accgaaagtc gttggctcag
    10561 catgcacacc atgtgtacgc cccatcatta atgttgtttt atactttttc gctttcgctg
    10621 ctaaaacatc aatgaaacgt tgaatgtctt gttctaaaat gtcattcgct tgtttaatct
    10681 gatagcttaa cgctgtatct acaacgtcag ttgaagtcaa accatagtgt acccatttac
    10741 gctcttcacc taaagtttct gagacttgac gtgtgaaagc gacaacgtca tggcgtgttt
    10801 ctagttcgat ttcttttgca cggtccacat ctacacgtgc atgttggcga atctttttca
    10861 catcttcttt cggaatgtaa cctaactcac tccatgcttc actcgcaagg atttccactt
    10921 ctaaccaagc ttcataacga ttttgatccg tccaaatttg agccatttct tctcttgaat
    10981 aacgttcgat catgtttatt aaactccaat cttgtaatgt tagtttcatt gtatcaaaac
    11041 aatcaatcgt gtacatgtat tattcaaaca aatttatcgt tcgtaatcaa gcctcaaatg
    11101 cttattcgtg tcaatttatt gttttcattc atacgcatag taaattccaa tgtaacccaa
    11161 ccatcaaaat actgataatt caaagtttat cgtgctttga tttgcatttc tacatgttcg
    11221 ttttcggtac ttcaagttca tgtctcactc ttgacaacac acaacaaaga cgaacattaa
    11281 aaagttaaat cattaaaaca ttcgatattt ctttttcgag taacacgttg tcattggatt
    11341 gctttaacat attcaatgta catcatagct ataaaaaaga cagcacatgt tcaattgtta
    11401 tgtgctgcct ttctcttatg attcaaatgc atccggtatt tttttacctg taaattcaat
    11461 ctcttgtctt aacacttcga tgtcaccgtg ctcattttcg ataaacacgg gcttttcaaa
    11521 ccgtttcact ggcatatatc ctgccgcttt cattcttgct aaacaatctt gaatcgtttc
    11581 atcaggttca actttaaatt tcatctgtat catacgcctt tactttttta cttcttacgc
    11641 ctttaaccca gaaaccaccg tgaatatttc gaggttcgta cgcaataata aatgccttag
    11701 gatccaattg tttaatcgta tccattagtt tcaattcata acgacgcggt gttaaaattt
    11761 gcatcactaa acggtcaccg tcacggccat gtgcaccaaa gtgcgttaca ccatatccta
    11821 gtgcacgcag ctgacgaggc aaatccaact catagtctgc tgtcgtaaca ttgacgaccg
    11881 aataaccgag tgcgagtttt tcttctatct tcattcctac aataatcccc acagagaaac
    11941 caagggcata ggcaataata ttttgaaatt gatctaagct cgacatcacc aaacctaaac
    12001 cgataatata gacaaacact tctacaaaac taacaagtgc cgcaacataa cggtaacctt
    12061 ttaacgttaa aatcacacgc atcgtcagtg ctgtgacata ggcaacgtta atgacgaaaa
    12121 tggcaatgag cattagccaa ggattgtcat tgattaaact catacgcacc ctcttttcct
    12181 tttaaaaatc tagctcattg tatcaagttc ttttatattt gtcattactt atctgattta
    12241 ggccatgaaa agcgtgtgta tgccaattca cgtttatgtg catttctgac gtagtgacgc
    12301 tcgattactg ctgcgtcttc tggtgatacg ccttttcctt caagataatt atcaatcgct
    12361 tcataagtca cgcctaaagc ttcttcgtcc ggaagttggg gtttgtcatc ctctaaatcc
    12421 gcagtcggga ccttttcata taaatgtgcg ggcgcgccta aatattgtaa cagttgacga
    12481 ccttgacgtt tgttcaaacc gaatagtggc gcaatatctg ccgcaccgtc tccatgtttt
    12541 gtgaaaaagc ccgtgatatt ttctgcagaa tgatctgtac cgacaacaat cccactcgta
    12601 ttcgccgcta tcgcatattg cactttcatg cgttctcgag ctttttcatt ccctttatga
    12661 aaatcactta atgcaattcc cgcttcttgt agcgactgca cactttggtc gacagccggt
    12721 ttgatattta cagtcacgat acggtcaggc tgaatgaagt tcaatgcatc ctcgacttca
    12781 tcagcgtctt tttgcacacc atacggcaac ttcaccgcaa taaactgaac atctctacct
    12841 gaagcatttc tcatattttc tacagcgagc tgcacaagtt ttccggctaa agtagaatct
    12901 tgacctcctg aaatcccgag cactaacgtc ttaacaaacg tatgtgcatg gaggtattgt
    12961 tcgataaaat gttgcatctc cttaatcgtt tcagcactat cgatactcgg tttcactttc
    13021 atctcttcta caatcatcgc ctgcatttca ctcatggtca tacttttctt ccatctcctt
    13081 tacattttca gcgacttcaa aaatgcgctt ttgtttattt tcccaacata acgtacttaa
    13141 atcgacaggg tactcttcag gattcaagta acgcttgttt tcttcccata aatattccaa
    13201 gttgcttttc aaatatgctt tcgcttccat ttctgtcgga caatcataaa cgagctgacc
    13261 gtctttaaaa atgtcatgat gtaaatcaac ggccttaaag tttttaattc gcttcatttt
    13321 gtatgtgtga atcggatgga acatttttaa aactttttct tcattcgggt cttcatgttc
    13381 tagcgtaata tagtcccctt ctgatttgtt cgttttcgta ttaataatgc ggtacacttt
    13441 tttcttacct ggtgtcgtta ccttttcagc attgttggaa agcttaatcc gatcgacaag
    13501 tttgccctcg ttgttctcta cagcaaccag tttgtacaca gcacctaaag caggttgttg
    13561 ataagcggta atcaattttg tgccgacacc ccaagaatca acagcagcgc cttgtgcttt
    13621 caaactgctg atcgtctgtt catctaaatc gtttgacgcg ataattttcg catctttgaa
    13681 acccgcttcg tctaacattt gacgcgcttt tttcgataaa taagcgatat cacctgaatc
    13741 taagcgaata ccgataaaat taatacggtc gccaagttct tttgcgacac gaatcgcatt
    13801 tggtacgcct gattttaaag tatggaacgt atcaaccaga aatacacaat tgcgatgtcg
    13861 ttctgcatat tttttaaaag cagtatattc atcaccatac gtttgtacaa atgcgtgcgc
    13921 gtgtgtacca gagactggaa tattgaaaag tttccctgca cgtacgttac ttgtcgaatc
    13981 aaagccacca atgattgcag cacgcgcgcc ccataacgca gcgtcaaatt catgtgcacg
    14041 tcttgtacca aattccatta atacatcatc gacagctact tgtttaataa tactcgcttt
    14101 tgttgagatg agtgtttgga aattaataat attgagcaat gctgtttcaa tgagctgtgc
    14161 ttgaatgagt ggcgcttcaa tacgcatgag cggttcgtta ttgaaacaaa gttcgccttc
    14221 tttcattgaa cgaatattgc cagtaaattt taaatcagcc aaatagttta aaaagtcatc
    14281 ttgataacca atggatttaa ggtattcaat atctgtgatt gagaaatgaa gattttgaat
    14341 caattgaatg acgcgttgta aaccattgaa tacggcataa ccgcttccga aaggcatgtt
    14401 tctgaagtag aggtcgaata ctgctttacg ctcatggata ccatcaaacc aatacgattc
    14461 ggccatatta atttgataca aatcattatg taacatgaaa ctgtcatctt tatattgata
    14521 catgatagac tccttttatc ttttcttatt attgctatca tatcacacaa taggaaaggt
    14581 ttcttgcgtt tgaacatttc aattttaagg gctctaaagt taaatttatt ctttgtcctt
    14641 accatactgg ttgcagaacc cacccttgcg ttcctaggcg ctcactccca ctaaccaacg
    14701 ttttgattca actgttacag aaaggaaagg cttggtgtat tttcaatttc gctttaatac
    14761 ctcaggcgtc tcggggcatt ctgcaatttt attcacttca aaccttttta tgcgaaagtc
    14821 ttatcaatcg tgatatcccc tttctattct aatatgctaa gccttaatct ttcaaagtag
    14881 tcatcaacta tgtatctgtg gctattcaaa attggagatg gattttcagg ttcagctgat
    14941 ccctcaatcg tctcctatca tttggcaatc tttcattgta ctttttcact ctataagtat
    15001 aacgagtgag attaacgtaa tgaactcaac taaggttcaa attgccgata tttattgttt
    15061 catgaatctt taaagtcaaa caatattatg acaattgtca tattcatttc aaaggtgaca
    15121 tggatttcat tataataacg atgaggtggg gaatatgcta aaagaagcac aagcatttat
    15181 taaacaaatg tatgatgaat tagatttatc tacaactgaa cgtgatgcgc gcttagcaga
    15241 aatagaacaa gccattcata caacagggac ataccaacat acgacagatg aactgaccta
    15301 tggtgcacgt gtagcttggc gtcattctaa tcgctgtatc ggtcgtttat tttgggaaag
    15361 cttgaaggtg attgatgcgc gggatattaa agaagaaaca ccctttttag aatccattga
    15421 atcacacatc aaaactgcga ctaatgacgg tcgtatcaag ccttgtataa cgatttatgc
    15481 gcagtcggat gaagaggggc ctcaaatttg gaataatcag ctgattcggt atgcaggata
    15541 tgacgataaa ggcgatccaa gtgaaaaatc gatcacgaag ctggctcaac atttagggtg
    15601 gacgggcgca cataccgact ttgatgtgtt gccactcatt tatcaactcc ctaatcaacc
    15661 tgtgaagtat tttgactatc cttcagattg gattatggaa gtaccgatta cacatgacca
    15721 atttccgaat gtgtcagcgc taaatttgaa atggtatgct gtacccatta tttcaaatat
    15781 ggatttaaaa ataggcggta tcacttatcc gacagcacct ttcaatggtt ggtatatggt
    15841 gacagaaatt gctgttcgca actttacaga tacataccgc tacaatttac tggaaacatt
    15901 tgcgacggcg atgggctata cagatttacg aaatgcaact tttaacaaag accgtgtgct
    15961 cgttgaaatc aatgatgctg tcttacaatc atttaaaaaa gctggcgtgt ccatggtcga
    16021 tcatttaacg gcctctaaac agtttgaaaa attcgaaacc gccgaagcac gtaaaggcag
    16081 aactgttaca ggcaaatggt cttggctcgc accaccgttg tcacctactt tgaccaccaa
    16141 ttatcatcac ggtttttcca acgaaacacg tcaaccgaac tttttttaca agaaaaatac
    16201 atcaacaggc tgtccttttc actaacatca tgtaaaataa aggcaattca tgtgaaagga
    16261 atgaggttat gacacttttc taccttggtc ctaaaggtac tttttcatat ttagcagctt
    16321 tgaaattaca atctcagaca aatcaaaaag aacaattggt cgaacgttct aatttgtatg
    16381 aagtgatgtc atccttacaa aaagacccgt cagcgagtgc aattgtgccg attgaaaatt
    16441 ctattgaagg tacgattaat gtgattgccg actcacttat cgaacaaaat tttgtcatca
    16501 ttgaagaaat atttttagat atcgcctttg cactgtacgg tttaccaaat caatcgttca
    16561 aagatattca gcgtgtctat tctatcagcc cagcaattag tcagacacaa aagtttattc
    16621 atgaacaaca atttgactat gattatacga cgagcactgt cgcatcactc gaaaaaattg
    16681 atgccacaac tggtgcgatt gcccctctcg gaagtggaga aatgtatgga tatgaggcac
    16741 tcgcgacaca catcgaggat tatcctcata atatgacgcg ttttctcgtt ttaaaacatg
    16801 cttctgaagt gacaaatcaa agtggatccg aatgtttatt agtcattaca ccgacagaag
    16861 ataaaccagg tctccttgcg agtattttga acacgtttgc gatgtttcaa gtcaatttaa
    16921 aatggataga gtctcgacca ctcaaaacac aattaggcat gtatcgcttt ttcgttcaag
    16981 ccgaatgccc agatacaaca gtgttaaaca aaatattaac gatattagag actcttgatt
    17041 tcaaaattaa aaatttaggc cgttttcatt aataattgtt gaagaagggg atgggataac
    17101 ttaatgtccc atcccccttc ctagttactc acttttatct gtgatgaatg ctgtgacatg
    17161 cttttgattc cattgaggtg aatgttcatt atttaaaatg gcaatgtcat gtacacctgt
    17221 taattgcgcg acttgatgtc cgcccataaa tgtattgcct atcacgttga catcggtatg
    17281 gggtgcatca tggtgacttc gaatgtgcag gacatcttta gccccgttat tcacaaagtc
    17341 attgtgcatt acatacaaac cgtcgcctcc ttgtttacct tcatgatttc cttctaaagt
    17401 cactgcattt ttaccttgat gtacacctaa ataacgaatc ccacctgtac agtttaaaaa
    17461 cagattatgc tgaataaaga tatttttacc ctttaatggc gttagcgcat aatcttgcgt
    17521 atcttcaaaa acattatgtt gaataatgat attttcataa aaacgatcga agcgtgtcgc
    17581 gtgtgaacct attgcacgat tccaactttg catatctcct tcaaacgaat taccaaaata
    17641 acaatgttcg atgaccgcat ttttcgtaat cgtgccatca ttgacaccaa attttggaaa
    17701 ggcgccttca acaaataaat ctaattgtac cgcttctgaa aaccaacgtt caccagtcac
    17761 atcataaaat ccaacaaaat tgcaatgatg gacgtgcaaa ccgtcgagcc cacaagcatc
    17821 tatcccatga cctcctacaa catttttaat tgttaaatga caaacttcaa tttcttgtgc
    17881 atgtcctaaa cacattgctg tattattgta agggtaatgg acgccattca tattccaaat
    17941 gccgccttga attttaatgt gactgttgcc attgtatccg taatagcgtt ttaaacttgt
    18001 gccgtttttc aacaatgcat cttttccagt ccttaacatt tgtgcatctg ggtctaatat
    18061 gagcgtcgtt ccttcataaa tctttaatgc ttttgcgata tgataagtac cgctaggaat
    18121 gtagacagta atcggtcctt tttgagcttg gttgagcgca cgctgtatgc cccaagtgtc
    18181 taacaatcga ttctggcctt ttgcaccaaa atctaaaaca tttattttca tatacgtgcc
    18241 ttcctttcgc gattaagtta tacttattat actgttgttt aatctttata ccacttttag
    18301 gagagaatga aatgtcaaat aaagctttag ttgttgttga ttattcgtat gattttgttg
    18361 cagacgatgg taaactgact tgtggtgcgg ctggtcaagc cattgagccg tacattgtgg
    18421 aacgtataaa agcataccac gaagcacaag aaaatatttt tttcatgatg gatttacatt
    18481 ttgaagatga tccttaccat cctgagacaa aatgtttccc accacacaat attaaaggca
    18541 caaaaggtcg tgaattgtat ggtgaagtga aagcattata tgatacgata aaagatagcg
    18601 cacatgttta ttttatagat aaacgccgtt acgattcatt ttacggcacc cctttagata
    18661 gtatgttacg cgaacgccaa gtcgacacta ttgaaattgt cggcgtgtgt acagatattt
    18721 gtgtcttaca cactgcgatt agcgcataca atttaaatta tcaattaatt atccctaaaa
    18781 aaggtgtagc gacatttaat gaagctggac accaatgggc actcacacat tttaaaacga
    18841 cattgggcgc tcaggtagaa taattgctat tcgccgtgct aaaatagaac tgaaatttat
    18901 aatatgaata aggagattta ataatgacaa cttatatttt tggtcatcaa aacccagaca
    18961 ctgatgccat ttcttcggca atcataatgg cagatttcga acaacaacat ggaaacaagg
    19021 aagctaaagc atttcgtatt ggtgagttag gtcctgaaac tcaatatgcg ttagattatt
    19081 tcaacgtaga agttccagaa ttcttaacag atgacttaac tgggcaagac gtcattttag
    19141 ttgaccataa tgagtttcaa caaagcgctc acaacattga aaaagcgaat attcgacatg
    19201 tcattgatca tcacagaatc gcgaattttg aaacagcagg tccgctttat taccgttcgg
    19261 agcctgtggg ctgtacagca acgattttgt acaaaatgta taatgagcgc aactatgaaa
    19321 ttcgtcctga gattgcaggt ttaatggtat ctgcaattat ttcagacagt ttattattca
    19381 aatccccaac atgtacacaa caagatattg atgcagcaca agcactcgca aaaatcgcta
    19441 atgtcgattt acaaacatac ggtttagaga tgttaaaagc cggtgcttct acaacaaata
    19501 aaacagaaga cgaattatta aatacagatg caaaatcatt cagtatgggg gactacacag
    19561 ttcgtatcgc acaagtgaac agtgtggatg tcgaagaagt gtttgcacgt caagaagcgc
    19621 ttgaaaatgc aatgaataaa gcaagtgctg aaaatagtta cgacacattt attcttgtcg
    19681 ttacagacat tattaatagc gactcaaaaa ttcttgtcgt tggtgcagaa caagagaaaa
    19741 ttgctcaagc attcaacaca acattagaca atcacacagc atttttgcca ggcgttgttt
    19801 ctcgtaaaaa acaaattgta ccaccgatta cagaagcatt atcataattt aaaaatataa
    19861 acaaaggtgt gataacatgt ctgaaaatgt gaaagcagga catcataaat tctattacgg
    19921 tgaaactgaa aatagacccg acgcacaaat tctattttct tactatgaca caaatgtgat
    19981 cgatgtttat agtacttatg tcagtccttc tttacgcggt ggcggtgtgg caaaacaatt
    20041 gtttgatgct gtcattgaaa aagcgaaaaa tgaaaattta aaaattattc catcttgcag
    20101 ttatgttgcg catcaattcg aacgtgatgc atcactcgca ccatatcgag cggaataaaa
    20161 agatgacttg aagtcgaggc acaatccaac gtgtctcgat tcttttttga ccacaatcgc
    20221 gataccgtca atttaagatt gtatttaaac tgtttttgaa catgattgca atacgagtat
    20281 cctattgcgt atgaatttta actgagtatg ttacaatcat acataatgaa gcgttacatg
    20341 tacgatagca ataaatgcaa catcaactga ctttacccta tttgaactga tcaaagacat
    20401 ttgattattt gaaaggagca tttcctattg aatccatttc acacacaatt caatgcaaca
    20461 caacgttatt ttcaatcaca tgcgacacgt tcgctcaaat cacgtaaaaa agctttaaaa
    20521 cagttagcta aacaaattaa actgcatgaa caagagattt tcgatgcact caaacaagat
    20581 ttaaataaaa atgaagttga agcatttggc acagaaatag gttatacgtt aaataacatt
    20641 cgctatatac gtaaaaacct atcaaaatgg gcaaaatcgc aagcggtcga cacacccttt
    20701 tttctttttc cagccaaaag ctttattgtc aacgaacctt taggcacagt tttaattatc
    20761 ggacctttta attacccatt tcaattaatt tttgaacctt taattggggc catcgctgca
    20821 ggtaacactg ccattgtgaa gccatccgaa ctaacgccaa atgttgctgc tgtcattgaa
    20881 aaaattatta cagagacatt tgacccagaa tatgttgctg tcgctcaagg tggtgccgaa
    20941 acgattcaat ctttattgga actgccattt gatcacattt tcttcacagg cagtcaaaag
    21001 gtcggcaaaa tcgtatacga agcagcggca aaacaactga ttcctgtgac actcgaactc
    21061 ggcggtaagt cacctaccat tattgataga actgccaact taaaagtcgc aagtgaacga
    21121 atctgttttg gtaaatttat gaatgccggt caaacgtgtg tcgcgccgga ttatgtcctt
    21181 attgatgaaa cgattaaggc tgattttatt gaagcactaa ctacgacgat tcgtgaattt
    21241 tatggtaccc acccgattga cagtgaagat ttaggtcgta ttgttaatga tcgccacttt
    21301 gaccgtttag cacaacttct aacagcacat caatcgaaca tcattgtcgg tggcgaaaca
    21361 gcagcagagc aacgatacat tgcgccaacg ttactcgatc gtgttcaagc ggatgacccg
    21421 ataatgcaag aggaaatctt cggacctatt ttaccaattt tgacataccg tgattttgac
    21481 gaagctatcg catatgtcca atcgaaacca aagccattat cgctttactt attcagtgaa
    21541 gatgaaaatg ccacaacacg cgttttgaat gaactgtcat tcggcagtgg tgcgattaac
    21601 gatacgattt tacaattagc caatccgaaa cttccttttg gcggggttgg cgcttcaggt
    21661 attggccgtt atcatggcaa atattcattc gaaacatttt cacatcaaaa accatacatt
    21721 ttcaaaacga caaagttaga aacaggctta ttgtttccgc cgtataaagg gaaactcggc
    21781 tacatgaaaa agctgtttaa gaaataaagg tatctatttt tccccttcaa ttatgtcaaa
    21841 ctttaactca aaagaaaaag gcttgggcaa ttatttaaaa atgcctgagc cttttcatta
    21901 tttttctaca tgattataag tgtgtttcgt ccaaaaactt cacacaaacg ccttctggag
    21961 ctgtttgttg atcgtctgtt ttagttaatc gacctgtatc gagatcacgt ttaaatacga
    22021 ccacttctga attttcttct tgatgcgcca ctacaaggta agcatcatct tctgtaatat
    22081 taaaatctct tgggaatgcg ccaccacttg aaacgatgtc gactaattca agtttggcac
    22141 cgtcttctaa taatttgaaa atagcaatac tgtcgtgtcc acggttactt acatataaga
    22201 aacgttgatc atgtgataaa cggactgcag ctaattttgt aggtaacaga aaatcttcag
    22261 gaatcgttaa gtgacgctct aattccgtaa aactaccatc ttcatatgcc atcacaacaa
    22321 cagtatttga caattcatta acgacgtaag cataacgtcc agttttatga taagcaatat
    22381 gtctaggtcc gtcacctggt tccaatgctg ttctgtgtgc tacttctaag ccttggtcac
    22441 cataatgata tgtcacgagt aagtcagcac ctaaatcaac agcaaccaca tatttgtgct
    22501 caggtgtgac atctaaataa tgcacatgtg actgctcttg tctatctaca ttagggccat
    22561 gtgggtattc gtgaatcact tcttctatta agcgggtaat gcggttattt gcagcatcaa
    22621 gttcataaat acgggccacc ccatcaccat aaaccgcttc aaaaacatac tttccatctg
    22681 gtgatactgc gacataacag cccgaacctt taaaggactc caatgattcc cctgtttttt
    22741 caaggctacc atcttgttta attttaaatg tggctaaacc agcgttttta tcatttttcg
    22801 taattccgat taatgtatct tcatgttgga caagatatgt tgaggcattc aattcgtatc
    22861 ctgtttcaac cgtttcaata cgtcctgctt gttcatctaa ttcaaagcga taaattcctt
    22921 taccgtcttt ttttgtataa gaaccaatat aaccttttac catggcatgc atccctccat
    22981 tttcttacgc ctattttacc aaattttgat gatgagacac acgagaaacg tttcatatct
    23041 cgcttcacct tgacaataaa aaaagcgaga ttgaaatcta atcctctcat agacttcata
    23101 tccccgctct cagttctcaa aatcataaaa atggttacgc ttcaaaagac gcttttatct
    23161 ttttaaaagc gaatgttact tttaaccttg gttcgcttcg atatcagcaa taatttcttt
    23221 cgttttgctt tcgatttctt caaagtcttt tttaaataca tatgtcaaca ctgctaaacc
    23281 aacacctaca acgccagtaa tcactagtgt tgaaacgaat aaaaatttaa ataatccctt
    23341 aa
//
LOCUS       DANHOL010000024        23173 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.024, whole genome shotgun sequence.
ACCESSION   DANHOL010000024 DANHOL010000000
VERSION     DANHOL010000024.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 23173)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23173)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23173
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.024"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            427..1329
                     /locus_tag="PTC08_000662"
     CDS             427..1329
                     /locus_tag="PTC08_000662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000816312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01777 family oxidoreductase"
                     /protein_id="HDK5682192.1"
                     /translation="MKRYLITGGTGMVGRALVEQLTRSNEAIIYILTRSDQTSQQQHV
                     HYINWSKDGWEEEVPHIDIVINLAGATLNKRWTTQHQQIMMTSRIQATRALFDLFKLR
                     EQTPDVLFNASAMGYYPPSKTAVYTESYQTTPHDLLSEIVYQWERQATLFEQLGTRVI
                     CGRFGLILSRDGGALPMMALPYRFFVGGRVGNGRQWYSWIHLADLVRAIQFLIQSPKA
                     SGPYNLSAPVPETQHQFGKVLGSVMHRPHYTWVPALILRLVLGKMSTLILDTQYMVPQ
                     KISDLGFQFDYPTLPLTLKDLYSK"
     gene            complement(1933..2430)
                     /locus_tag="PTC08_000663"
     CDS             complement(1933..2430)
                     /locus_tag="PTC08_000663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HDK5682193.1"
                     /translation="MKQHVRRATLNDLEAIMAIYNHAILHTVTVYTYEPTHIEERRQW
                     LAEKQRDGYPVFVYENEGTVLGFATYGPFRNWPAYQYTIEHSIYVSPDARRQGVASQL
                     LTVVIEDATANGYQTIVAGIDDSNEGSLKLHEKMGFNYMGTLKKVGYKFERWLNLVFY
                     QKQLK"
     gene            complement(2527..3114)
                     /gene="clpP"
                     /locus_tag="PTC08_000664"
     CDS             complement(2527..3114)
                     /gene="clpP"
                     /locus_tag="PTC08_000664"
                     /EC_number="3.4.21.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp endopeptidase proteolytic
                     subunit ClpP"
                     /protein_id="HDK5682194.1"
                     /translation="MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSI
                     VSQLLFLQAQDAEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSF
                     LLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAAKHILRTRERLNKILSERTGQ
                     PIEKIEKDTDRDNFLTAQEAKEYGLIDEVMEPEKA"
     gene            3266..3337
                     /locus_tag="PTC08_000665"
     tRNA            3266..3337
                     /locus_tag="PTC08_000665"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3299..3301,aa:Arg,seq:ccg)
     gene            complement(4246..5190)
                     /gene="whiA"
                     /locus_tag="PTC08_000666"
     CDS             complement(4246..5190)
                     /gene="whiA"
                     /locus_tag="PTC08_000666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein WhiA"
                     /protein_id="HDK5682195.1"
                     /translation="MSFASEMKNELTRIEVDHANAKAELSALIRMNGALSLSNQQFVI
                     NIQTENATTARRIYSLIKFVFKVEVEILVRKKMKLKKNNIYICRIKMKTKEILDELGI
                     LKNGMFSHDIDPEMVKDDEMRRSYLRGAFLAGGSVNNPETSSYHLEIFSLYEGHSTGL
                     TQLMNTYELNAKSLERKKGWITYLKEAERIAEFLSLIGGYQALLKFEDVRIVRDMRNS
                     VNRLVNCETANLNKTVSAAMKQVESIQLIDQEIGIDNLPDRLREVARLRIEHQDVSLK
                     ELGEMVSTGTISKSGINHRLRKLNEMADKIRSGEPFEV"
     gene            complement(5237..6232)
                     /locus_tag="PTC08_000667"
     CDS             complement(5237..6232)
                     /locus_tag="PTC08_000667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016424532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YvcK family protein"
                     /protein_id="HDK5682196.1"
                     /translation="MKQLKLVLIGGGTGLSVLARGLKTFPIDITAIVTVADDGGSTGK
                     IRDEMDIPAPGDVRNVLAALSDVEPTLEQLFQYRFKEDQISGHSLGNLLIAALTNITH
                     DFGHAVKELSKILNIKGRVIPSTISSVSLNAEMEDGEIVTGESNIPRKQKKIKRVFLE
                     PADVQPMDEAIEALREADLIVLGPGSLYTSVISNLCVKGIANAIVESDAKKLYVSNIM
                     TQPGETDHYTVMDHIDAIHQQLGNHVLDFVIANQLEFSPQIIEKYESKGAKPVYYDKD
                     ELNQLGVQLVTGQHLVEVSEHDYVRHRTEVLAEMIYEIALQEISTIQFDPDQFKS"
     gene            complement(6234..7142)
                     /gene="rapZ"
                     /locus_tag="PTC08_000668"
     CDS             complement(6234..7142)
                     /gene="rapZ"
                     /locus_tag="PTC08_000668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNase adapter RapZ"
                     /protein_id="HDK5682197.1"
                     /translation="MQHEENNEIVKSELLVVTGLSGAGKSLVIQSLEDLGYFCVDNLP
                     PILLPKFVELMEQGNPSMQKVAVGIDLRGREFFQYLVREIDAVQSRKDVIVDVLFVDA
                     DTEKLISRYKETRRKHPLQEHTELPLVKAINEERKLLAEIRSLANYTLDTTTLSPKAL
                     RKRVYEYFNKENKSTFTINVSSFGFKHGIQIDADLVFDVRFLPNPYYVPELRPLTGMD
                     EDVYKYVMKWKETNTFYEKLLDLLLFMIPGYKKEGKSQLVIAIGCTGGQHRSVALAQR
                     LAEELKQIYDYNVYVHHRDAHIESGE"
     gene            complement(7748..8680)
                     /gene="trxB"
                     /locus_tag="PTC08_000669"
     CDS             complement(7748..8680)
                     /gene="trxB"
                     /locus_tag="PTC08_000669"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019469483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HDK5682198.1"
                     /translation="MSEQVRYDVAIIGAGPAGMTAAVYASRANLNTVMIERGMPGGQM
                     ANTEEVENFPGFEMISGPDLSSKMFDHAKKFGAEYKYGDIKGIEDKGDYKVIDFGSST
                     LEATAVIIATGAEYKKVGVPGEEQLGGRGVSYCAVCDGAFFKNKNIYVIGGGDSAVEE
                     GTFLTKFASKVTIVHRRDQLRAQKILQDRAFKNDKIDFIWNHTLKSVNEKDGKVGSLT
                     LVSTVDGTEQTVEADGLFVYVGMKPLTQPFENLGITNEAGYIVANDDMSTAIKGIFVA
                     GDVREKGLRQIVTATSDGSIAAQSAQEYIESLHD"
     gene            complement(8743..10182)
                     /locus_tag="PTC08_000670"
     CDS             complement(8743..10182)
                     /locus_tag="PTC08_000670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HDK5682199.1"
                     /translation="MTQKRNIIQFSDDVALYERLAKQKIQQQDYVKAQRYLEKVLALS
                     PDCFEAKQQLATCFIKLNAPGRAEAIYYEEISKGNELEASYYELSQLNIDLNEPNKAY
                     LFGLSYAFLADDEAYREELEDLFEVAFNGEHPLEEESQLFVVQVIFQYLFGQGRLVEA
                     REYLLRQDEEIQDNRIIRNLLAMCYLYLNENKIAQEMFERLLKEDPSDVHALCHYTLL
                     LYNMNQQTRFQNYVKILNKIRPMNDEESFKLGIVLSYLKQYPASQQLLVPLHRKGKFQ
                     TFQLFHALSFNYYYLGNIEQSHHFWQVLTQFSKANRGFPPWVIEESAHYFNQHVEPLL
                     LSDDQHERLYGLFLLNQLNGKEILMTKEVWTILESMGDYEKLYLSYLIQNLQLRKLHF
                     IHQGMEILYRLPETQPYASLFLSWISYAESLLVEQVDQEQVEAYVAAVAYLFFNQKED
                     HDMTRPQIIEHFDVTTDAFEQALQHLLSI"
     gene            complement(10202..10687)
                     /locus_tag="PTC08_000671"
     CDS             complement(10202..10687)
                     /locus_tag="PTC08_000671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HDK5682200.1"
                     /translation="MKRRLKVYPAGCHNALHDLYRYIRFMRLLKNTLIIEIARYVPHV
                     GVKRWMYCRLLKMTIGEKTAFAFKAVPDLLYPEKIKIGHNVIIGYNTTLLTHEFLTES
                     LRVGEVEIGDHTMIGANVTVLPGVKIGSHVQIGAGSVVSKDIPDYTVAYGNPIQLHSK
                     H"
     gene            complement(10689..11525)
                     /locus_tag="PTC08_000672"
     CDS             complement(10689..11525)
                     /locus_tag="PTC08_000672"
                     /EC_number="2.4.99.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase"
                     /protein_id="HDK5682201.1"
                     /translation="MIGYIDPVAFSLGGLEVKWYGIIIASAILIGYWIAQKSAQSVGF
                     HEDDLVNILLVCVFVAIISARLYFVLFQLDYYIQNPIEIPMIWHGGIAIHGGLIGAFA
                     MGTYYCYRKNWHPFQLGDVVAPSIILAQGIGRWGNFMNHEAHGGPVSRSFLESLHLPQ
                     FIIENMQINGIYYQPTFLYESIWDVIGFIILITIRRHLKIGETFFIYIIWYSVGRFYI
                     EGLRTDSLMLTETIRIAQAVSIVCIIIGVIFIVWRRLKKDVPLYREVNVLNWPFDKKG
                     KR"
     gene            complement(11525..12466)
                     /locus_tag="PTC08_000673"
     CDS             complement(11525..12466)
                     /locus_tag="PTC08_000673"
                     /EC_number="2.7.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HPr kinase/phosphorylase"
                     /protein_id="HDK5682202.1"
                     /translation="MLTTQDLVKRFNLNVVAGEAGLNRPIRNTDISRPGLEMAGYFSH
                     YASNRIQLLGTTELSFYNLLPDAERQGRMRKLCRPETPAIIITRGHDAPDELLEAAEE
                     LDTPLIYVEEATTRVMGRLTTYLEHELANSTSLHGVLVDVYGVGVLITGDSGIGKSET
                     ALELVKRGHRLVADDNVEIKEITKDQLIGKAPKIIEHLLEIRGLGIINVMTLFGAGSI
                     LTQKRIRLNINLETWHQDKLYDRVGLNHETLKILDTEITKKTIPVRPGRNVAVIIEVA
                     AMNYRLNIMGINTAEEFNERLNAEILKNSQQDKGDIE"
     gene            complement(12976..13326)
                     /locus_tag="PTC08_000674"
     CDS             complement(12976..13326)
                     /locus_tag="PTC08_000674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682203.1"
                     /translation="MEEAKVKVLELLKDGKISVEEATTLLDAMTTEEKVTHATTTNKS
                     DRTEKTTRDFEETVEGFVNNTLDSVASLLKHGQKLINVNRDKVKEMSESERQAALKKV
                     EETLNEVREKMKKD"
     gene            complement(13330..16173)
                     /gene="uvrA"
                     /locus_tag="PTC08_000675"
     CDS             complement(13330..16173)
                     /gene="uvrA"
                     /locus_tag="PTC08_000675"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HDK5682204.1"
                     /translation="MEEPSIVVKGARAHNLKNVDIELPKNQLIVMTGLSGSGKSSLAF
                     DTIYAEGQRRYVESLSAYARQFLGQMDKPDVDTIEGLSPAISIDQKTTSKNPRSTVAT
                     VTEIYDYIRLLYARIGKPFCPNHGIEIESQTVQQMVDRIMELEERTKIQLLAPVVNHR
                     KGTHEKLLTDISKKGYVRVRVDGEIMDVTQVPELDKNKNHTIEIVVDRLVVKPGIETR
                     LADSIETVLELADGRLVVDIIDGDKLEFSEKHACPICGFSIGELEPRMFSFNSPFGAC
                     PTCDGLGQKLTVDLDLVVPDKDKTLNEGAILPWEPTSSDFYPSMLKRVCEVYKINMDK
                     PFKKLTERQRNIILYGSGDKEIEFTFKSKFGQERKRTMPFEGVVPNIERRYHESPSEY
                     VREMMQKYMGEQVCETCHGQRLSREALSVYVAGKNVGEVVEQSIKEALTYYENIELTE
                     QDAQIAHLILKEITSRLAFLNNVGLDYLTLNRSSGTLSGGEAQRIRLATQIGSRLSGV
                     LYVLDEPSIGLHQRDNDRLIHTLQEMRDLGNTLIVVEHDEDTMIAADYLVDIGPGAGE
                     HGGEVVASGTPKQVMRNAKSLTGQYLSGKKFIPVPEHRRPVTDRKISVKGARSNNLKN
                     VDVDFPLSVMNVVTGVSGSGKSSLVNEVLYKSLAKAINKSKIKPGEHDEITGMDQIDK
                     IIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYQKGRFSFNVKGGRCEA
                     CKGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKGKNIADVLEMTVEDATQFF
                     ENIPKIKRKLQTLVDVGLGYITLGQPATTLSGGEAQRVKLASELHKRATGRSIYILDE
                     PTTGLHVDDISRLLKVLNRLVENGDTVVIIEHNLDVIKTADNLIDLGPEGGDGGGTIL
                     ATGTPEEIAAIPESYTGRYLKTVLARDKERMEG"
     gene            complement(16179..18161)
                     /gene="uvrB"
                     /locus_tag="PTC08_000676"
     CDS             complement(16179..18161)
                     /gene="uvrB"
                     /locus_tag="PTC08_000676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002508272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrB"
                     /protein_id="HDK5682205.1"
                     /translation="MEHHDFKIASNFEPQGDQPQAIKALVKGIEEGKRHQTLLGATGT
                     GKTFTMSNVIKEVGKPTLIIAHNKTLAGQLYSEFKTFFPENRVEYFVSYYDYYQPEAY
                     VPSTDTFIEKDASINDEIDQLRHSATSALFERDDVIIIASVSCIYGLGNPDEYRDLVV
                     SIRVGMEMDRSELLRKLVDVQYTRNDIDFRRGTFRVRGDVVEIFPASREELCIRVEFF
                     GDEVDRISEINYLTGEVLKEREHFALFPASHFVTREEKMKIAIERIEKELEEQLAYLR
                     SENKLLEAQRLEQRTNYDLEMMREMGFTSGIENYSVHLTLRPLGSTPYTLLDYFGDDW
                     LIMIDESHVTLPQIRGMYNGDQARKQVLVEHGFRLPSALDNRPLKFEEFEQKAKQLVY
                     VSATPGPYEIEHTDEMIEQIIRPTGLLDPKIEVRPTKNQIDDLLSEIQERTEQGERVL
                     ITTLTKKMSEDLTTYLKEAGVKVNYLHSEIKTLERIEIIRDLRMGTFDVLIGINLLRE
                     GLDIPEVSLVVILDADKEGFLRSERSLIQTMGRAARNDKGHVIMYADRITDSMKVAID
                     ETERRREIQIAYNEKHGIVPKTINKEIHDVISATVETDETNEDQRKEVPKKMTKKERE
                     KTIENVEKEMKEAAKALDFERATELRDLLFELKSKG"
     gene            complement(18331..18576)
                     /locus_tag="PTC08_000677"
     CDS             complement(18331..18576)
                     /locus_tag="PTC08_000677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CsbA family protein"
                     /protein_id="HDK5682206.1"
                     /translation="MIWYLLAAFFPCVLVVIFSAITRSKWMGTLITLVVIGASVYKGF
                     FHNEWIIFLDVVSLLAGYIIVEELKIHHIEHDKEGGM"
     gene            complement(18582..19223)
                     /locus_tag="PTC08_000678"
     CDS             complement(18582..19223)
                     /locus_tag="PTC08_000678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HDK5682207.1"
                     /translation="MGIHQYFKRLSDLEKLIRLPGKFKYFEHNVAAHSFKVTKIAQYL
                     GTVEEHHGKTVDWKSLYEKALNHDFAEVFTGDIKTPVKYASGELKKLFSQVEEEMVDT
                     FIKEEIPEQYQDIYRRRLQEGKDDSLEGQILSVADKIDLLYETFGEIQKRNPEPLFFE
                     IYEMSLETIMQFDHLASVQDFIENIIPEMLTERFIPRTELKEMTMQILNKRKM"
     gene            complement(19431..20535)
                     /gene="prfB"
                     /locus_tag="PTC08_000679"
     CDS             complement(join(19431..20462,20464..20535))
                     /gene="prfB"
                     /locus_tag="PTC08_000679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010959142.1"
                     /ribosomal_slippage
                     /note="programmed frameshift; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 2"
                     /protein_id="HDK5682208.1"
                     /translation="MELSELKRNLDSYSAKLEQLRGSLDLENKETNIQEYEEMMADPQ
                     FWDNQERAQTIIDQNNAIKSVVNNYYEVAETLEEMIATYELLQEEYDDEMKDDLEQEV
                     IGFQTKVDQFELQLLLDGEHDANNAILELHPGAGGTESQDWTNMLLRMYQRYCEQQGF
                     KVEIVDYQAGDEAGVKSVTMLVKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFAS
                     CDVIPEFNNEKIEVEINSDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVVNNQN
                     ERSQIKNREAAMKMLKAKLYQLELEQKEQELAAIRGEQKDIGWGSQIRSYVFHPYSMV
                     KDHRTNEETGNVNAVMDGEIGPFIEAYLRHQMQ"
     gene            complement(20575..23103)
                     /gene="secA"
                     /locus_tag="PTC08_000680"
     CDS             complement(20575..23103)
                     /gene="secA"
                     /locus_tag="PTC08_000680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecA"
                     /protein_id="HDK5682209.1"
                     /translation="MGLITKMIDGNKREVKRLSKLADKVIALEEDIALLTDEEMRAKT
                     KAFQEEVQQIEDIKKQNNKLDDILPEAFALVREASKRVFNMTPYKVQIMGGIAIHKGD
                     IAEMRTGEGKTLTATMPTYLNALTGRGVHVITVNEYLSSVQSEEMAELYNFLGLSVGL
                     NLNSLSTVEKREAYSKDITYSTNNELGFDYLRDNMVNYKEDRVMRPLHFAIIDEVDSI
                     LIDEARTPLIISGEAEKSTSLYTQANVFSKMLKAEEDYNYDVQTKSIQLTEQGIDKAE
                     RMFKIENLYDVKHVDVIHHINLALRAHYTMQRDVDYMVTGGEILIVDQFTGRTMPGRR
                     FSEGLHQAIEAKENVQIQNESKTMASITFQNYFRMYNKLAGMTGTAKTEEEEFRNIYN
                     MTVTQIPTNRPVQRVDRSDLIYVSQKGKFDAVVEEVIEKHRKGQPVLLGTVAVETSEY
                     ISNLLKKRGIRHSVLNAKNHEREAEIVSGAGQRGAVTIATNMAGRGTDIKLGEGVEEL
                     GGLAVIGTERHESRRIDDQLRGRSGRQGDKGDSRFYLSLQDDLMVRFGSERMQAMMSR
                     LGMDDSTPIESKMVSRAVESAQKRVEGNNFDARKRILEYDEVLRKQREIMYEERNQII
                     DQDHSTDLVMQMMHSTLDRALLHYVNEDEEKMDYEPLIHYVQDIFLHEGDLTESEING
                     KDREDMFEVIWAKIEAAYNRQKDQLGDRMPEFERMILLRSIDNHWTSHIDTMDQLRQG
                     IHLRSYGQQNPLRDYQNEGHQLFDIMMQSIEEDVSKYILKSVITVEEDVEREKTKELE
                     GKHVSAEDGKEKVKPQPIVKEHEVGRNETCPCGSGKKYKNCHGK"
BASE COUNT         6634 a         5055 c         3786 g         7698 t
ORIGIN      
        1 aaggagagtc aaaatgaaaa gaattgttaa tatgctcatt cgtttcattg tttatcgtgt
       61 aattggcaag ttcatcactc aaaaaatgaa tgaccgtcaa cgtaaaaata aataactttt
      121 tacacgagtc atttttataa gtcactttga agccactaac gaagacaatg ttgattccct
      181 aacataaata aagagatctg aatgctgcat catccagatc tctactaaag ggagtcaaaa
      241 atacctttgt cgtatatatt taaggggtat actgaattta attaagagat gtattaatta
      301 tcgaaggtat ctctattata acgtactttg tgaaaaaata aacagattca agtcatcgta
      361 agtgaagaat tgatgaccat ttattgacaa tactatgaac tcatataaag taaaggagcg
      421 aagcctatga aacgctattt aattacaggt ggcactggta tggtgggacg tgctttagtt
      481 gaacaactta cacgttctaa tgaagcgata atttatatcc tgacaagaag tgatcaaact
      541 tcacaacaac aacatgtaca ttatattaat tggagcaagg acggttggga ggaagaagtc
      601 cctcacattg acatagttat taatttggca ggtgctacat tgaacaaacg ttggacaacg
      661 caacatcaac aaattatgat gacaagtcgt attcaagcga cacgtgcgct atttgactta
      721 tttaaactac gtgaacaaac acctgatgtc ctatttaacg ccagtgctat ggggtattac
      781 ccgccatcaa aaacggctgt gtatactgaa tcatatcaaa cgacacctca tgatttatta
      841 tcagaaatcg tgtatcagtg ggaaagacaa gcgacactgt ttgaacaact tggcacacga
      901 gtcatttgcg gacgttttgg actgattctc tctcgtgacg gcggcgcact tccaatgatg
      961 gcactgcctt atcgtttctt tgtaggtggc cgtgtgggta atggccgtca atggtattca
     1021 tggattcatt tagcagattt agtacgtgcc attcaatttc tcattcagtc tcccaaagct
     1081 tctggcccct ataatttatc agcaccagta cccgaaactc aacatcaatt cggcaaagtt
     1141 ttaggaagcg tcatgcatcg accacattac acttgggtac ctgcattgat attacgtctt
     1201 gtgcttggca aaatgtcaac gctcatactc gatacacaat acatggtacc acaaaaaata
     1261 tcagacttag gatttcaatt tgactatccg accttaccgt taaccttaaa agatttatat
     1321 tcgaaataaa aaccactata gatgactcga aatgttgttg attttacaac cattcgagtc
     1381 atctttttag tggcctatag ggggacatag aaaattttta gccataatcc attcatagat
     1441 tgatatttca ttaacggcta taaagcagtc agaaaataag ggtgaatggg ataattgata
     1501 ctattgtttt ttgatttcat aattttaccc ttagttttac tgtatttgat ataagcttgc
     1561 ccagaaggct gagacgcctg agggatacag ttgaaaacaa aatgatgtct tttaattttg
     1621 agcgtggtcg ctgttcaacg cagtagctgt ctgacttctc aatgcgcata cttttaagaa
     1681 gtcgagtcag ccatgcgggg ggcaatacga cgaaatcttt gtgacacatg agctttctgt
     1741 attgctccca atatccaatt ctgcatcgat ctagtgttca tttcaatcaa gtcgagttga
     1801 agggccagtc cctagaacgc gaagccatga gggcaatcaa aagccacaaa tcatagggca
     1861 gacaagttta acaaaaatat tgcatcaata gcatcaaaaa tttttatgtc gcatgcccgt
     1921 acaattttca tcttatttta actgcttttg atagaatacg agattgagcc agcgttcaaa
     1981 tttatagccg acctttttca atgttcccat atagttgaag cccatttttt catgcaattt
     2041 caaacttcct tcattgctat catcaatgcc agccacaatc gtttgataac cattcgctgt
     2101 tgcatcttca atcactactg ttaataactg agacgccaca ccttgtcttc ttgcatcggg
     2161 gctaacatag atggaatgtt caatggtata ttgataggca ggccaattcc taaaaggacc
     2221 ataagtcgca aaacctagca ctgtcccttc attttcataa acaaaaaccg gataaccgtc
     2281 acgttgcttt tctgctagcc attgacgtcg ttcttcaata tgcgtgggtt catatgtata
     2341 aactgttaca gtatgcaaaa tggcgtgatt atagattgcc ataattgctt ctaaatcatt
     2401 cagtgtcgct cgtctaacat gttgcttcat cgtcaatcct ccattaatac gcactttcaa
     2461 acccttccga tatagcaaaa aagggatgaa actgttgtct caccccacat ttatcgcatc
     2521 actttattaa gctttttcag gctccattac ttcgtcgatt aaaccgtatt cttttgcttc
     2581 ttgagcagtt aagaaattgt cacggtctgt atctttttca attttttcaa taggttgacc
     2641 tgtacgttct gacaaaattt tatttaatct ttcacgtgtt cttaaaatgt gtttcgctgc
     2701 gatttcgatt tcagtcgctt gaccttgtgc accgccaagt ggttggtgaa tcatcacttc
     2761 tgcgtttggt aatgcgaaac gtttaccttt tgcacctgca gctaataaga atgagcccat
     2821 agatgctgcc ataccgatac aaattgtttg tacatctggt ttaatatgtt gaattgtatc
     2881 gtaaatcgca aaaccagctg ttacactacc accaggtgaa ttaatatata aataaatatc
     2941 tttctccgcg tcttgtgctt gtaagaataa taattgtgat acgattgagt ttgctacgtt
     3001 atcatcaatc gctgaaccta acatgatgat acggtctttc aataaacgtg agtaaatatc
     3061 gtatgcacgc tcaccgcggt ttgtcgtttc aataactgta ggaattaaat tcatttgatg
     3121 attcctccta aatttattaa tttgtttcta ttctaaccca aaagtcaaaa atggtcaaaa
     3181 acaacgcact catagacaaa tttttgctag gagttgaccc tcgcatgccc gaaaggtaca
     3241 atggtgaata gacttaagca attaacccct cgtagtgtaa tggataacac ataagattcc
     3301 ggttcttaca atagaggttc gattcctctc gagggggttc ataccattca ataacacact
     3361 ttttaaaatt aagaatccca taacggcggg gttctttttg ttttgctagt caatagcgcg
     3421 ctagatgacg aacatttcaa ggactttcat tcatctattc ccgattcagt cgtcactgta
     3481 acctttacgt tgttgataat ggttacggcg atctagcctt aaaattaaca ttcactcaac
     3541 cgcactaaca tcaatacggt catgagaatt agtactacaa aagtcgctca aaagcattgt
     3601 taatttatgt ccttactatg ataacacgat aaaccattat cgtataactc gtttacatta
     3661 atacggatat tccctctact ggcaagttca tgagcgattt tccttactga gatactatag
     3721 ctaggaagct tattctattt gccggtgcgt acgcttacaa tggtctttaa ataccgtttt
     3781 ttgtctttgc atctgaagga ttaacttcaa cacccatttc tttagcaact ttttaatttt
     3841 attgatatca aacatagaaa atccctctta ctcaacaatt cttgctttat tatacactat
     3901 gcaacttgtg tcatatacac agatttgctt ctctgttctt acatccccta tattcataaa
     3961 cacatcttta aatttttgat ttgttgatag cagtgttgcg atgataactt aagcttcaac
     4021 gtatagcata tacatattca tgatttgaca tctacgtttt attttatact tatcaaaaac
     4081 aaagatgact tctttctcca tcactctaac gaatccccct aattcatctt cttctgatgg
     4141 tctatctaaa ttcactcatt caacaataca tcaatttctg cattaaaata agcatcttta
     4201 aaccttttta gaggtctaag atgcttgtta tcaacaggac tatatttaca cttcaaatgg
     4261 ttctccactt ctaattttat cagccatttc attcagtttt ctcaaacgat gattaatgcc
     4321 tgatttagaa atggtaccag tgctcaccat ttcacctaat tcttttagcg agacatcttg
     4381 gtgctcaata cgcaatctcg caacttctct taatcgatct ggcaagttat caatgccgat
     4441 ttcttgatca atcaattgaa tactttccac ttgtttcata gccgcactga ctgtcttatt
     4501 taaatttgcc gtctcacaat taacgagacg attaactgaa ttccgcatat ctcggacaat
     4561 tctcacatct tcaaacttta gtaacgcttg atagccacca atcaaactta aaaattcagc
     4621 aattcgctca gcttctttga gatatgtaat ccatcccttt ttacgttcta aactttttgc
     4681 atttaattca tacgtattca tcaattgtgt caaaccagtt gaatgacctt catagagcga
     4741 gaaaatttct aaatgatatg aagacgtttc tggattgttc acggagccac ctgctaaaaa
     4801 tgcgccacgt aaataactcc gtctcatttc gtcatctttt accatttcag gatcgatatc
     4861 atggctgaac atgccgtttt tcaaaatccc aagttcatct aaaatttcct tcgtcttcat
     4921 ttttattcga caaatataaa tattgttttt cttcaacttc atttttttgc gtactaatat
     4981 ttcaacttca actttaaaca caaatttaat cagtgaataa atacgtcgcg ccgtcgttgc
     5041 attttccgtt tggatattaa tcacaaattg ttggttagac agactcaaag ccccgttcat
     5101 tcgaatcagt gcgcttagtt ctgccttagc gttcgcatgg tcaacttcaa ttcgtgtcag
     5161 ttcatttttc atttcagatg caaagctcat aatgaatctt tccctttcta tttactatgg
     5221 ttcaaaatgg ctacaattag gatttgaatt gatctgggtc aaactgaatc gtactaattt
     5281 cttgtaaggc aatttcataa atcatttctg ccaaaacttc tgtacgatgg cgcacataat
     5341 catgttctga aacttctaca agatgctgtc ctgtcacgag ctgtacaccg agttgattca
     5401 attcatcctt atcataatac acaggctttg cgccctttga ttcatatttt tcaataatct
     5461 gaggtgaaaa ttctagttga ttcgcaatca caaaatcaag cacatgatta ccgagttgtt
     5521 gatgaatggc atcgatatga tccatgactg tgtaatgatc tgtttcaccc ggttgcgtca
     5581 taatgttaga aacatataat tttttcgcgt cactttcgac tatcgcatta gcaatgcctt
     5641 tgacgcacaa gttcgaaatc acactcgtat acaaagaacc cggacctaac acaatcaaat
     5701 ccgcttcacg caatgcttca attgcttcgt ccattggttg gacatctgca ggctctagaa
     5761 acacacgctt aatcttcttt tgttttcttg gaatattaga ctcccctgtg acaatttcac
     5821 catcttccat ctccgcgttc aaagagacac tcgaaatcgt cgacggtata acgcggcctt
     5881 taatatttaa aattttactt aattctttca cagcatgacc gaaatcatga gtaatattcg
     5941 ttaaagccgc aatcagcaag ttccccaatg agtgaccgct aatttgatct tctttaaatc
     6001 gatattgaaa cagttgctca agtgtcggtt ctacatcact taaagcagcc aatacgttac
     6061 gtacatctcc tggcgccgga atatccatct catctctgat tttccccgtg ctgccaccgt
     6121 catctgctac tgtcacaatt gctgtaatat ctatcggaaa agtttttaat cctcttgcca
     6181 aaacggataa accagtacct ccaccaatca gtactaattt aagttgtttc attttactcg
     6241 ccactttcta tatgcgcatc acgatgatga acatacacat tataatcata aatttgcttt
     6301 agttcttcag ctaaacgttg tgctagtgcg actgagcgat gctgaccacc cgtacaccca
     6361 attgcgataa cgagttgcga tttgccttct tttttataac cgggaatcat aaataacaat
     6421 aaatctaata gtttttcata aaatgtattc gtttctttcc acttcatcac atatttataa
     6481 acatcttcat ccatacctgt gagtggtcgc aattcaggca catagtatgg gttcggtaaa
     6541 aagcggacat caaatactaa atctgcatcg atttgaatgc catgcttgaa accaaaacta
     6601 gaaacattga ttgtaaatgt tgatttattt tctttgttaa aatattcata aacacgtttt
     6661 ctcaaggctt taggtgataa cgttgttgta tctaaagtgt aattcgccaa acttctgatt
     6721 tctgctagta atttacgttc ttcattgatg gctttgacga gcggtaactc ggtatgttct
     6781 tgtagaggat gtttacgacg tgtttcttta tagcgtgaaa tgagcttttc agtatctgca
     6841 tcaacgaata gcacatcgac aataacatct ttgcgacttt gtactgcatc gatttcacgt
     6901 actaaatatt ggaaaaattc gcgtcctctc aagtcaatcc ctaccgcaac tttttgcatc
     6961 gacggattac cttgttccat taactctaca aatttcggaa gtaaaatcgg cggtaagttg
     7021 tcgacacaga aatagcctaa gtcttctaaa ctttgaatga ctaatgattt ccctgcacca
     7081 gataggcctg tgacaacaag gagttcactt tttacgattt cattattttc ttcatgttgc
     7141 attattaacc accatccaat catattctct attagtttac atgaaaacag tctaaagtta
     7201 tagagggatg gatataggac atcaaaattt tgatgctact gatggataaa gcatttgttt
     7261 aacttgccct cctcctttgg tttgggtttg tggtttttga gtgccatcgt gacttctctt
     7321 ttcctagagg ctggctctac aactcaactc ggcttgcttt caactttatc ccttaggcat
     7381 cttagccttc taggcaatct tacatcaaat atagaaaaac tgagagcaag attatgaaat
     7441 caaaaaacaa tagcgtcatt tttttgtcca atttaacctc tacttagaaa caattcatat
     7501 attcatgatt attagaagag agaggaagtg aatctcgtaa cgcctatgtt tttgaaatca
     7561 ttgcgttatc acatgaacat tgaccactta tcctatttct aattgtggtt catgcatacg
     7621 cgatgaaatt caatcaataa aattttcaag aataattcaa tatcacagac attcctttaa
     7681 atgctataaa aaaagaactg gaaacggggt cccagctcct gttgattcaa tgtcaagtgt
     7741 ttaaaaatta gtcatgtaag ctttcgatat attcttgtgc actttgagcg gcaatactac
     7801 cgtcacttgt tgctgtcaca atttgacgta agcctttttc acgaacgtct cctgctacga
     7861 aaataccttt aatggcagta ctcatatcat cgtttgccac aatataacct gcttcgtttg
     7921 tgatacctaa gttttcaaat ggttgtgtaa gaggcttcat acctacatat acaaataatc
     7981 catctgcttc tactgtttgt tcagtgccat ccaccgttga aacaagtgtt aatgaaccga
     8041 ccttaccgtc tttttcattg acagatttaa gtgtgtgatt ccaaataaaa tcaattttat
     8101 cgtttttaaa agcacggtct tggagaattt tttgtgctct taattggtca cgacggtgta
     8161 cgattgttac tttgctagcg aatttagtta agaacgtacc ttcttctact gctgaatcgc
     8221 caccaccgat gacatagata tttttgtttt taaagaaagc accatcacat acagcacagt
     8281 agctgacacc gcgacctccg agctgttctt ctccaggtac gcccactttt ttgtattccg
     8341 cacctgtcgc aataatcaca gctgtcgcct caagtgtact agaaccaaaa tcaatgactt
     8401 tgtaatcgcc tttatcttcg atgcctttaa tatcgccata tttgtactca gcgccaaatt
     8461 ttttagcatg atcaaacatc ttacttgaaa gatcaggtcc tgaaatcatt tcgaaacctg
     8521 gaaagttttc tacttcttca gtgtttgcca tttgtccacc tggcatacca cgttcaatca
     8581 ttactgtatt taaattcgcg cgtgaagcat aaacagcagc tgtcatgcct gctggtcctg
     8641 caccaataat cgcaacatca tatcttactt gttctgacat gatctgttcc tcctttaatt
     8701 tcatcatacg cattttacaa catttaattc atggactcaa atttaaatgc tcaacagatg
     8761 ctgaagtgct tgttcaaaag catcggttgt cacatcaaaa tgttcaataa tttgtggtcg
     8821 cgtcatatca tggtcttctt tttgattgaa aaagagataa gcgaccgcag ccacatacgc
     8881 ttccacttgt tcctggtcga cttgctcgac taatagactt tctgcataac taatccaact
     8941 taaaaagaga gaggcataag gttgtgtttc tgggaggcga taaagtatct ccataccttg
     9001 atgaataaag tgtagttttc tcagttgcag attttgaatg agataagaga gatacaattt
     9061 ttcataatct cccattgatt ctaaaatcgt ccaaacttct ttcgtcatca aaatttcttt
     9121 accgttgagt tgatttaaca aaaagagacc gtacaaacgt tcatgttgat catcacttag
     9181 caacaaaggc tccacatgtt gattaaaata atgggcactt tcctcaatga cccatggtgg
     9241 aaaaccacga ttcgctttcg aaaattgagt taacacttgc caaaagtgat ggctttgctc
     9301 gatatttcct aggtaataat aattgaatga aagcgcatga aacagttgaa aggtctgaaa
     9361 cttgcctttg cggtgaagtg gcactaacaa ctgttgagag gctggatact gctttaaata
     9421 actgagcaca atcccaagct taaaagactc ttcatcattc atcggtcgga ttttgtttaa
     9481 tattttcaca taattttgga agcgtgtttg ttgattcatg ttgtagagta acaaagtgta
     9541 atgacataac gcatgcacat cggaagggtc ctctttcaac aaacgctcaa acatctcttg
     9601 agcgattttg ttttcattta aataaagata acacatcgcg agcaaattac ggatgattcg
     9661 attatcttga atttcttcgt cctgtctcaa caaatactca cgcgcttcta ccaaacggcc
     9721 ttgaccgaat aaatattgaa aaatgacttg tacgacaaac aactgacttt cttcttcaag
     9781 cggatgttcg ccgttgaatg ccacttcaaa taagtcttcc aactcttctc gataggcttc
     9841 gtcatcagct aaaaaagcat aacttaaacc gaataaatac gctttgtttg gctcatttaa
     9901 atcaatattc aactgactta attcatagta agaagcttcc aattcattgc ccttactaat
     9961 ttcttcataa taaattgctt cagcacgtcc tggcgcattt aacttgataa aacatgtcgc
    10021 aagttgctgt ttcgcctcaa aacaatctgg tgacaacgct aacacttttt ctaaatagcg
    10081 ttgtgctttt acataatctt gttgttgtat tttttgtttt gctagacgtt cataaagtgc
    10141 cacatcatcg ctgaactgta taatatttcg tttttgtgtc atccattgtc acctctcttt
    10201 tctaatgttt tgagtgcagt tgtatcggat tgccatacgc cacagtataa tcgggaatat
    10261 ctttagaaac gacactcccc gcaccaattt gaacgtggct gccgattttc acacctggta
    10321 atacggtcac attcgcacca atcatcgtat ggtccccgat ttcaacttca ccgactctta
    10381 acgattcagt taaaaattca tgggttaata aagtcgtatt ataaccaatg atgacgttat
    10441 gaccaatttt tattttttct ggatataata aatcaggcac cgctttaaaa gcaaatgcag
    10501 ttttttcacc tatcgtcatt tttaataaac ggcagtacat ccatcgtttc acacctacat
    10561 gagggacata tctggctatt tcaataatga gcgtattttt aagaagtcgc ataaagcgga
    10621 tataacgata cagatcatgt aatgcattat gacagcccgc aggataaact ttaagtcgtc
    10681 gcttcaactt aacgttttcc tttcttgtcg aacggccaat tgagcacgtt cacttcgcga
    10741 tagagcggga catctttttt aagtcgacgc catacaataa agataacacc gatgataatg
    10801 catacaattg agaccgcttg tgcaattcga atcgtctccg ttaacatcaa actgtctgta
    10861 cgtaagcctt ctatgtaaaa acgaccgacc gaataccaaa tgatatagat gaaaaatgtt
    10921 tcgccgattt tcaaatgacg acggatagtg attaaaataa taaaaccgat aacatcccaa
    10981 atcgattcat ataaaaatgt cggttggtaa taaatgccgt tgatttgcat attttcaata
    11041 ataaattgtg gtaagtgtaa cgattctaaa aatgaacggc tcactggacc gccgtgcgct
    11101 tcgtggttca taaagttacc ccaacgtcca ataccttgcg ctaaaataat gcttggtgcc
    11161 accacatcac ctaattgaaa cggatgccag tttttgcgat aacaatagta agtacccatc
    11221 gcaaacgcac cgatgagacc cccgtgtatt gcaataccgc catgccatat catcggaatt
    11281 tctatcggat tttgaatata ataatccagt tggaaaagca cgaaatataa acgcgcacta
    11341 ataatcgcaa caaatacaca aactaataaa atattgacaa gatcatcttc gtggaaaccg
    11401 actgactgtg cacttttttg tgcaatccaa tacccaatta aaatcgcgct cgctatgata
    11461 ataccgtacc atttcacttc taagccgccc aaggaaaaag cgactggatc aatgtatcct
    11521 atcattattc tatgtctcct ttatcttgtt gactgttttt taagatttca gcatttaaac
    11581 gttcattaaa ctcttctgct gtattaattc ccataatatt caagcgataa ttcatggccg
    11641 ccacttcaat gatgacagct acatttcgcc ctggacgaac aggaatcgtt tttttcgtaa
    11701 tttcggtatc taaaatctta agtgtttcat gatttaaacc gacacggtca tacaatttat
    11761 cttgatgcca agtttccaga ttgatgttta agcgaatgcg tttttgcgtt aaaatcgaac
    11821 ccgcaccaaa caatgtcatc acgttaataa tgcccaatcc tctaatttct agcaaatgtt
    11881 caatgatttt aggcgcctta ccaatgagtt gatctttcgt aatctctttg atttctacgt
    11941 tatcatccgc aacaagacga tgaccacgtt tcacaagttc caaagctgtt tcacttttac
    12001 ctataccgga atcacctgta attaatacac cgacaccata cacatcgacg aggacaccat
    12061 gtaacgatgt agaattagca agttcatgtt cgagatacgt cgtcaaacgc cccatgacac
    12121 gtgtcgttgc ttcttcgaca taaatcaacg gcgtatctaa ctcctctgcc gcctctaaca
    12181 actcatccgg cgcatcatgc cctcgtgtaa taataatggc tggtgtttca ggacggcaaa
    12241 gtttacgcat acgtccttga cgttcagcat ctggtaataa attgtagaaa gacagttccg
    12301 ttgtacccaa aagttgaata cgattggaag cgtagtgaga aaaataccct gccatttcca
    12361 aaccgggcct tgaaatatct gtattacgta ttggacgatt taaccccgct tcaccagcga
    12421 ccacattcaa attaaatcgc ttaactaaat cttgcgtcgt taacatctaa tcacctcagt
    12481 tttactgttt actttaaatc aaactttatt tttaatcact tttgactacg cattacttgt
    12541 ttcattatac atgaatctcc acaattgaaa cacatttcaa cacgtatgca aaatcacgaa
    12601 aaacgtgcta gctttgttgt gcatttccat tatcaaaagt tcagtgtatc cgtatgagca
    12661 tcgctatatc ttaacacata tcccatcttt tttgcagtac cctttagaat tcaaagtata
    12721 ccattaaaaa cgcatgagag atacgcaact ttagtttgaa aaaatggatt actttgaggc
    12781 agcgaatcta aaatgttatt cacgttttca ggttgaatca atgcgatgta gtattaacca
    12841 cacagctttc attgtgaaac cgtaagaacg tgcagcacgg tgtgacaatc tatgtatgat
    12901 gacaacctag tctatgtgaa acatatgtgg caaaacaaaa ggaagcatac cattcacagt
    12961 acacttcctc acctattaat ctttcttcat tttctctctc acttcattca acgtctcctc
    13021 cacttttttc aaagccgctt gacgttcact ttcactcatt tctttcactt tatcacgatt
    13081 cacattaata agcttttgac catgctttaa caaactcgct acactatcca atgtgttatt
    13141 cacaaaaccc tctaccgtct cttcaaaatc acgcgtcgtc ttttcagtac gatcactttt
    13201 atttgtcgtt gtagcatgtg ttactttttc ttccgttgtc atcgcgtcca ataatgtcgt
    13261 tgcttcttct acagaaattt tgccatcttt cagtaattcc aatactttga ctttagcttc
    13321 ttccatggct tagccctcca ttcgttcctt atcacgcgct aatacagttt taagataacg
    13381 acccgtataa gattctggga tagcggcaat ttcttcaggt gtccctgtcg caagaatcgt
    13441 accgccaccg tcaccacctt cagggcctaa atcaattaag ttatctgctg ttttaatgac
    13501 atctaaatta tgttcgatga ttacaacggt atcaccattt tcaacaagtc gattgagcac
    13561 ttttaacaat cgactaatat catcgacatg taagcctgtt gtcggttcat cgagaatata
    13621 gattgagcgt cctgttgctc gtttgtgtaa ttctgaggca agtttaacac gttgcgcttc
    13681 tccacctgaa agtgtcgttg caggttgccc aagcgtaata taacctaatc caacatcgac
    13741 taaagtttgt aatttgcgtt tgattttagg aatgttttca aaaaattgag ttgcgtcttc
    13801 tacagtcatc tctaacacgt cagcaatatt ttttccttta taagtgactt ccaacgtctc
    13861 acgattgtaa cgtttgccat gacatacttc acaaggcaca tacacatcag gcagaaaatg
    13921 catctctatt tttataatac catcaccttt acatgcttca caacggccac ctttaacgtt
    13981 aaaactaaaa cgcccttttt gataaccacg tacttttgct tcgttcgttg aggcaaagac
    14041 gtctcgaata tcatcaaata cgcctgtata tgtggctgga ttagaacgcg gtgttcttcc
    14101 aataggcgac tgatcgatat caataatttt atcgatttga tccatacctg taatttcgtc
    14161 atgttcacca ggtttgattt ttgatttatt aatcgcttta gccaatgatt tgtacaacac
    14221 ttcattcacg agcgaacttt ttcctgaacc tgatacacct gtcacaacat tcatgacaga
    14281 gagcggaaaa tcaacgtcga catttttgag gttattactg cgcgcacctt tgactgaaat
    14341 tttacggtca gtcactggac gacgatgttc cggaacggga atgaactttt taccacttaa
    14401 atattgacca gtgagtgatt tggcgttacg catcacttgt ttcggcgtac cgctcgcaac
    14461 gacttcaccg ccgtgctcac ctgcacctgg gccaatatca acaaggtagt ctgccgcaat
    14521 catcgtgtct tcatcgtgtt caaccacaat taatgtgttt ccaagatcac gcatttcttg
    14581 taatgtatga atcaaacgat cgttgtcacg ttgatgtaaa ccaatagatg gctcatctag
    14641 cacgtacaag acacctgaca aacgagaacc gatttgtgtt gcgagtcgaa tacgttgcgc
    14701 ttccccacct gacaatgtgc cagatgaacg gttcagcgtt aaataatcga gtccaacgtt
    14761 atttaaaaaa gctaaccgcg acgtaatctc ttttaaaatt aaatgagcaa tttgtgcgtc
    14821 ttgttcagtt agctcaatat tttcgtaata tgtcaaagct tctttaatgg attgttccac
    14881 cacttcgccg acatttttac cagccacgta caccgacaat gcttcgcgac tcaatcgttg
    14941 gccatgacac gtctcacaca cttgttcacc catatatttt tgcatcattt cacgtacgta
    15001 ttctgaaggt gattcgtggt aacggcgctc aatattcggg accacccctt caaacggcat
    15061 cgtacgttta cgctcttgac cgaatttcga cttgaatgta aactcaattt ctttgtcccc
    15121 agaaccgtat aagatgatgt ttctttggcg ttcagttaat tttttaaatg gtttgtccat
    15181 attgattttg tatacttcac atacacgttt taacatcgat ggataaaagt ccgaacttgt
    15241 cggctcccac ggtaaaatgg cgccttcatt cagcgtttta tctttatccg gaacgactaa
    15301 atccaagtct acagttagct tttgtcctaa accatcacac gttggacacg cgccaaacgg
    15361 actattaaaa ctgaacattc tcggctctaa ttcaccgatt gaaaaaccac aaattggaca
    15421 tgcatgcttt tctgaaaact ctagcttatc tccatcaata atgtccacga cgagtcgacc
    15481 gtctgctaat tcaagtacgg tctcgatgga atctgctaaa cgtgtttcaa tacccggttt
    15541 cacgactaaa cggtccacga cgatttcaat cgtgtggttt ttatttttat caagttccgg
    15601 tacttgtgtc acgtccataa tttcaccgtc aacacgcaca cgtacataac cttttttact
    15661 aatgtccgtt aataattttt catgcgtccc tttacgatgg ttcacaacag gtgctaatag
    15721 ttggattttc gtacgttctt ccaattccat aatacgatca accatttgtt gtacggtttg
    15781 tgattcgatt tcgataccat gattgggaca aaaaggcttt ccgatacgcg cataaaggag
    15841 acgaatataa tcgtaaattt ctgttacagt cgccaccgtt gaacgtgggt ttttactcgt
    15901 tgtcttttga tcaatcgata tcgctggaga taaaccttca attgtatcta cgtctggttt
    15961 atccatttgc cctaaaaact gacgagcata tgcgcttaaa gactccacat atcgacgttg
    16021 cccttcagca taaatcgtat caaatgcgag cgaggacttc cccgatcctg acagtcctgt
    16081 catgacaatt aactgatttt ttggcaattc gatatcaaca ttttttaaat tgtgggcacg
    16141 ggcccctttc actacgattg atggttcttc catgcatttc acccttttga ttttaattca
    16201 aataataaat ctcttaattc ggttgctctt tcgaaatcta atgcttttgc tgcttctttc
    16261 atttcttttt caacattttc aatcgttttt tcacgttctt ttttcgtcat tttcttcggt
    16321 acttctttac gttgatcttc atttgtttca tccgtttcga ccgttgcact aatgacatca
    16381 tgaatctctt tattaattgt tttcggtaca atgccatgtt tttcattgta tgcgatttga
    16441 atttcacgac gtcgttccgt ttcatcaatc gcgactttca tggaatccgt tattcgatct
    16501 gcatacatga tgacatgccc tttatcatta cgcgctgcac ggcccatcgt ttggattaac
    16561 gaacgctcag aacgtaagaa accttcttta tccgcatcca aaatcaccac taatgagact
    16621 tctggaatat caagtccctc tctaagcagg ttaataccga tgagcacatc aaatgttccc
    16681 atacgtaaat ctctaatgat ttcaatccgt tctaatgttt taatttcaga gtgcaaataa
    16741 ttgaccttta caccggcttc ttttaaataa gtcgttaaat cctcactcat ttttttcgtt
    16801 aacgttgtga tcagtacacg ttcgccttgt tctgttcgtt cttgaatttc actgagcaag
    16861 tcatcgatct gatttttcgt agggcggact tcgatttttg gatctaacaa gccagttggt
    16921 cgaataattt gttcaatcat ttcatctgta tgttcgattt catatggacc tggtgtcgcc
    16981 gatacataaa cgagttgttt cgctttttgt tcgaactctt caaacttcaa tggtctattg
    17041 tctaatgcac ttggaagacg gaaaccatgc tcaactaaca cttgttttcg tgcttggtct
    17101 ccattgtaca ttccacgaat ttgaggtaac gtcacatgcg actcatcaat cataataagc
    17161 caatcatcac caaaataatc taacaaagtg tacggtgtag aaccgagtgg tcgcaatgta
    17221 agatgaaccg aatagttctc aatccctgat gtaaagccca tttcgcgcat catctctaaa
    17281 tcataatttg ttcgttgttc taaacgttgc gcctcgagta atttattttc acttcttaaa
    17341 tatgctagtt gttcttctaa ttctttttca atacgctcaa ttgcaatctt cattttttct
    17401 tcacgggtta cgaagtgaga agctgggaaa agtgcaaaat gttcacgttc ttttaatact
    17461 tcgcctgtta aatagttaat ttcactaata cggtctactt catcaccaaa aaattccaca
    17521 cgaatacata actcttcacg tgaagctggg aaaatctcaa cgacatcgcc gcgtactcta
    17581 aatgttccgc gtctaaagtc aatgtcgttt cgtgtatatt gtacgtcaac aagctttcgc
    17641 aataactcac ttctatccat ttccatccct acacgaatgc ttacaactaa gtcacggtat
    17701 tcatctggat tacctaaacc gtaaatacaa cttacactgg cgataataat gacatcatct
    17761 cgttcaaaca gcgcactcgt tgctgaatgt cggagttggt ctatttcatc gttaattgac
    17821 gcatcttttt caataaacgt atcggtagac ggaacatacg cttctggttg gtaatagtcg
    17881 tagtaactaa caaaatattc cactctattt tcagggaaga aggttttgaa ctcactgtac
    17941 aattgccccg ctaacgtttt gttgtgggca ataatcagcg tcggtttgcc cacttcttta
    18001 atgacattgc tcatcgtaaa tgttttaccc gtacctgttg caccgagtaa tgtttggtga
    18061 cgtttacctt cttctattcc ttttaccagt gctttgatag cttggggttg atccccttgt
    18121 ggttcgaaat ttgaagcaat tttaaagtca tgatgctcca ttcactgtcc gcctcctatc
    18181 tacttaatac tcatatttta acagaacaca atgataaaat acaaacattt gttcgtaatc
    18241 caacacaaag aggagtgctt ctgattacct tcaaactgtg tcagattcac tcctgatgtc
    18301 gctataattg tgaaggcgta tgcacaacga ttacatgccg ccctctttat catgttcgat
    18361 atgatgaatt tttagttctt ctacaataat ataccctgct aacaatgata caacgtcaag
    18421 gaaaataatc cattcattat gaaaaaaacc tttataaact gatgcaccga ttacaactaa
    18481 tgtaatgagc gtccccatcc atttacttct cgttatcgcg ctgaaaataa ccacaaggac
    18541 acaaggaaaa aaagcggcca gtagatacca aatcaaccct atcacatctt tcttttattt
    18601 aggatttgca tcgtcatttc ttttaattca gtgcgtggta taaatctttc agttaacatt
    18661 tctggaataa tattttcaat aaaatcctgt acggaagcca gatgatcaaa ttgcataatc
    18721 gtttcaagac tcatctcata tatttcaaaa aatagaggtt caggattacg tttttgaatt
    18781 tcaccaaatg tttcatacaa taaatcaatc ttatctgcga ctgatagaat ttgtccttct
    18841 aacgagtcat ctttgccttc ttgcaagcga cgacggtaaa tatcttgata ctgttccgga
    18901 atttcttctt taatgaatgt atcaaccatt tcctcttcta cttgtgaaaa cagttttttc
    18961 aattcaccac tcgcatactt cacaggcgtt ttaatatctc ctgtaaacac ttcagcaaag
    19021 tcgtggttga gcgctttttc gtataaactt ttccaatcca ctgtcttacc gtgatgctct
    19081 tcaactgtac ctaaatactg agcaattttt gtaactttaa aagagtgtgc ggctacatta
    19141 tgctcgaagt atttaaattt cccaggtaat cgaatgagct tttctaagtc tgataacctt
    19201 ttaaaatatt gatgaattcc cataatcaac ctcctcctgt catatttaca tttgatgtcc
    19261 atttgttgat tatattaaca tatttatatt atttatatca cttgtttctc caacttttga
    19321 aaaaatactt gcacgtgctc gtaccaaaca tcaaacgtct tcatcaccca tataattcag
    19381 gggcttgaac aattgaatgc cctagcccct agttggatat acacttcatc ttattgcatt
    19441 tgatgtctta aatacgcttc gataaacgga ccaatctcac cgtccatgac tgcgttgacg
    19501 ttacccgtct cctcatttgt gcgatgatct ttcaccatag aataaggatg gaaaacgtaa
    19561 gaacgaattt gactgcccca cccaatatct ttttgttcac cacgaatggc agcaagttct
    19621 tgctcttttt gttctaactc gagttgataa agttttgctt tcaacatttt catagctgct
    19681 tctcggtttt taatttgcga acgttcattt tggttattca ctacgatacc tgtcggatgg
    19741 tgcgtaatac ggatggctga ttcagttttg ttaatatgct gcccccctgc acctgaagca
    19801 cggaaagtat ccacagtaat atcgtctgaa ttgatttcaa cttcgatttt ttcattgtta
    19861 aattcaggaa tgacatcgca tgacgcaaat gacgtatggc gacgacccga agaatcaaaa
    19921 ggcgaaatac gaacgagacg gtgcacgcct ttttctgctt ttaaatagcc ataagcattg
    19981 tgtcctttga cgagcattgt aacactcttc acacctgctt catcgcccgc ttgataatcg
    20041 acaatttcca ctttgaaacc ttgctgttca caataacgtt gatacatccg taacaacata
    20101 tttgtccagt cttgagattc tgtgccacct gcaccaggat gtaactcgag aatagcattg
    20161 tttgcatcat gctcgccatc tagcaagagt tgcaattcga attggtctac tttcgtttga
    20221 aatccaatga cttcttgttc taaatcatct ttcatttcgt catcgtattc ttcttgtagc
    20281 aattcatacg tcgcaatcat ctcttcaagc gtttcagcaa cttcatagta attgtttaca
    20341 acagacttta tcgcattgtt ttgatcgata atcgtttgcg cacgctcttg attatcccaa
    20401 aattgtgggt ccgccatcat ctcttcatat tcttggatgt tcgtctcttt gttttctaag
    20461 tcaaagagac cccctaagtt gttctaattt tgcactataa ctatccagat tgcgtttaag
    20521 ttcggacaat tccatcatgt atcgctcctt ttaaatattc aactattgcc accgctattt
    20581 accgtggcaa tttttatatt ttttgccgct tccacatgga catgtttcat tacgtccgac
    20641 ctcatgctct tttacaatag gttgtggttt aactttttct ttgccatctt cagctgaaac
    20701 gtgtttacct tctaactctt tcgttttctc acgttcaaca tcttcttcta ccgtgatgac
    20761 agatttcagg atatatttgc tgacatcttc ttcaatactt tgcatcatta tatcgaacaa
    20821 ttgatgtcct tcattttgat agtcacgcaa tggattttgt tgaccatacg aacgtaaatg
    20881 gatcccttga cggagttggt ccattgtatc aatatgtgat gtccaatgat tgtcgattga
    20941 acgcaataat atcatacgtt caaactccgg catacggtcg ccaagttgat ctttttgacg
    21001 attatatgca gcttcaattt tcgcccaaat gacttcaaac atatcttctc tatctttgcc
    21061 attaatttca ctttctgtta agtcaccttc atgtaaaaag atatcttgaa catagtgaat
    21121 cagtggttcg taatccatct tttcttcatc ttcattcacg taatgtagca atgcgcgatc
    21181 taatgtggaa tgcatcattt gcatcactag gtccgtacta tgatcttggt caataatttg
    21241 attacgttct tcatacatga tttcacgttg tttacgtaaa acttcatcat attccaaaat
    21301 acgtttacgc gcatcaaagt tgttaccttc tacacgtttt tgtgcagact ctacagcacg
    21361 tgacaccatt ttagattcaa tcggcgtaga atcatccatc cctagacgac tcatcatcgc
    21421 ttgcatacgt tctgaaccga agcgcaccat caaatcatct tgtaatgata aatagaatcg
    21481 actgtcccct ttatcacctt gacgacctga acgaccacgc aactgatcat caatacggcg
    21541 tgattcatga cgttccgtgc caattacagc tagaccacct agctcttcaa caccttcgcc
    21601 tagtttaatg tctgtcccac gtccagccat gtttgtcgca atcgttacag cgcctctttg
    21661 acctgcaccg gaaacaattt ctgcttctct ttcatgattt ttcgcattaa gaacactatg
    21721 acgaataccg cgttttttca ataaattcga gatatactcc gatgtttcaa ctgcaacagt
    21781 acctaataaa acaggttgac ctttgcgatg tttttcaatc acttcttcga caaccgcatc
    21841 aaatttacct ttttgactca cataaattaa atctgaacgg tcgacacgtt ggacaggtcg
    21901 gttcgttgga atttgagtta cagtcatatt gtaaatgtta cggaattctt cttcctctgt
    21961 tttagccgta cctgtcatac ctgctaactt gttgtacatt ctgaaatagt tttggaatgt
    22021 aatcgacgcc atcgtcttag attcgttttg aatttggaca ttttctttcg cttcaatcgc
    22081 ttggtgtaag ccttctgaga aacgacgtcc tggcattgta cgacctgtaa attggtcaac
    22141 gatcagaatt tcgccacccg ttaccatata atccacgtca cgctgcattg tataatgcgc
    22201 acgtaaagca aggttaatgt ggtgaatcac atctacatgt ttcacatcat ataagttttc
    22261 aattttaaac atacgttctg ccttgtcaat accttgttcc gtcaattgaa tacttttcgt
    22321 ttgtacatca tagttataat cttcttcagc tttaagcatt tttgaaaaca cattcgcttg
    22381 tgtatataaa gatgtagatt tctccgcttc acctgaaata attaaaggcg tacgggcttc
    22441 atcgattaaa atcgagtcga cttcatcaat aatcgcaaaa tgtaatggac gcataacacg
    22501 gtcttcttta taattcacca tgttgtcacg taaatagtca aagccaagtt cattatttgt
    22561 actgtatgtg atgtctttac tataagcttc acgtttttct actgtactta aactattaag
    22621 attcaatccg actgacagac ctaaaaaatt atacagttct gccatttcct cactttgaac
    22681 gctagataaa tattcgttta ccgtaataac gtgcacacca cgaccagtta atgcatttaa
    22741 ataggttggc atcgttgcag ttaatgtttt accttcaccg gttctcatct ctgcaatatc
    22801 acctttatga atggcgattc cacccatgat ttgtacttta tatggtgtca tattgaacac
    22861 acgtttagaa gcttcacgta caagtgcgaa ggcttccggt aaaatatcat ctaatttatt
    22921 attctgtttt ttaatgtctt ctatttgttg aacttcttct tgaaaagctt tcgtctttgc
    22981 tctcatttct tcatcagtta gcaacgcaat atcttcttct aatgcgatga ctttgtctgc
    23041 taacttactt aaacgtttga cttctcgttt attaccgtca atcattttag ttatcaaacc
    23101 cattttgttc gctcctttag ccataaaact gtgccgctta caactatcca tcatatcatt
    23161 tttcggtata aat
//
LOCUS       DANHOL010000025        23075 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.025, whole genome shotgun sequence.
ACCESSION   DANHOL010000025 DANHOL010000000
VERSION     DANHOL010000025.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 23075)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23075)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23075
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.025"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(6..773)
                     /locus_tag="PTC08_000681"
     CDS             complement(6..773)
                     /locus_tag="PTC08_000681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA threonylcarbamoyladenosine dehydratase"
                     /protein_id="HDK5682210.1"
                     /translation="MKHQFSRNELAIGQEGLNKLKQTTVAVLGVGGVGSFAAEALART
                     NIGHIILIDKDDVDITNVNRQLHALTTTVGQSKVSLMEERIRLINPDCKVTPLHMFYT
                     EETYEQLFEDYDIDYVVDASDTIIYKVHLMEQCLARDIQIISSMGAANKTDPTQFEIA
                     DISKTHTDPIARIIRNKLKQKGIKKGVPVVFSGESPIVIREDVKAVVGDAQGKNRKAQ
                     MPPSSNAYVPSVVGLICASYVCNNILKDITVQRIKDK"
     gene            complement(856..1048)
                     /gene="ssrS"
                     /locus_tag="PTC08_000682"
     ncRNA           complement(856..1048)
                     /ncRNA_class="other"
                     /gene="ssrS"
                     /locus_tag="PTC08_000682"
                     /product="6S RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00013"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00013"
     gene            complement(1119..2885)
                     /gene="aspS"
                     /locus_tag="PTC08_000683"
     CDS             complement(1119..2885)
                     /gene="aspS"
                     /locus_tag="PTC08_000683"
                     /EC_number="6.1.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002510453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA ligase"
                     /protein_id="HDK5682211.1"
                     /translation="MAKRTTYCGSVTEELLEQEVTLKGWVHNRRDLGGLIFVDVRDRE
                     GYVQVVFNPAFSKEALEVAERIRSEYVVEITGTVTKRDDETINPKIKTGQVEVQAKSI
                     EIINQSETPPFSINEENLNVDENIRLKYRYLDLRREKLAQTFKMRHQITRSIRQFLDG
                     DGFYDVETPVLTKSTPEGARDYLVPSRVHDGEFYALPQSPQLFKQLLMISGFDKYYQI
                     VKCFRDEDLRADRQPEFTQIDIEMSFVEQEDVMQLGEAMVKNVLADVKGIEMTDAFPR
                     MTYTEAMSRYGTDKPDTRFGMELLDVSELGQIMDFKVFKGAVESGGQVKALVVENAAA
                     DYTRKDIDGLTEFVNIYGAKGLAWVKVVEDGLNGPIARFFEDAHVTKLQALTGAKAGD
                     LVLFVADSKDVVAQSLGALRNKLGKERGLIDPEQYNFLWVTDWPLLEYDEEARRYVAA
                     HHPFTSPKVEDIDLLETAPEQAQAQAYDLVLNGFELGGGSIRIHDGELQQRMFKALGF
                     SDEAAQEQFGFLLDAFKYGAPPHGGIALGLDRFVMILSGRTNLRDTIAFPKTASATDL
                     MTDAPSPVSERQLDELSLRIKH"
     gene            complement(2885..4156)
                     /locus_tag="PTC08_000684"
     CDS             complement(2885..4156)
                     /locus_tag="PTC08_000684"
                     /EC_number="6.1.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine--tRNA ligase"
                     /protein_id="HDK5682212.1"
                     /translation="MIHIPRGTQDILPEETTKWRYIENQLHKLMEVYNYQEIRTPIFE
                     STDLFARGVGDSTDVVQKEMYTFKDKGDRSITLRPEGTAAVVRSYIENKMQGLPNQPV
                     KLYYNGPMFRYERKQKGRYRQFNQFGVEAIGAENPSMDAEVLAMVMHIYQSFGLKKLK
                     LVINSVGDAESRVDYQNALREHFQPVIHNYCKDCQQRIKTNPMRILDCKVDRHQPEIQ
                     TAPSITDFLNDYSKDYFEAVKSHLDRLGVPYEVDPKLVRGLDYYTHTAFELMMDNEAY
                     DGAITTLCGGGRYNGLLELLDGPSETGIGFALSIERLLLALEEEGIEFPQMQHIDLFV
                     ATMGEKADDFAVTLLNRLRHAGISVDKDYLSRKLKGQMKQADRLNATYTIVIGDQELE
                     AGEVAVKHMATGESQTMKFEEIESYIHGGKE"
     gene            complement(4518..5393)
                     /locus_tag="PTC08_000685"
     CDS             complement(4518..5393)
                     /locus_tag="PTC08_000685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HDK5682213.1"
                     /translation="MKKVDQWLKQKRIHPQRFYGACFTIALVGILVVSYFVLRHSDDD
                     HINLIEDAEIRTGPNAAYPVLYQVHKGDEFLQIGKQGKWIEVRSANGKQKGWIAGWHT
                     NLDIPADVNPHANPLRDKTIVLDPGHGGSDQGASSRQGDKTLEKDITLKTGLELKSLL
                     EKKGAKVKMTRSTDEYVKLKDRNLKGDVFISIHNDALETPNANGATVYWFHEQQEGLA
                     QTLNASIQKKAMLSNRGTRQENYQVLRQTEMPAVLLELGYISNPTDTVMMKDKNHRQI
                     VEQAIVDGLESYFLS"
     gene            complement(5390..5842)
                     /locus_tag="PTC08_000686"
     CDS             complement(5390..5842)
                     /locus_tag="PTC08_000686"
                     /EC_number="3.1.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-tyrosyl-tRNA(Tyr) deacylase"
                     /protein_id="HDK5682214.1"
                     /translation="MKIVVQRVQSASVKNHQIERTIQQGFCLLVGIGEGDTQADAKVL
                     AKKIANSRIFEDENEKLNLNIQQINGEILSISQFTLYADVRKGNRPGFTQAMAPDQAN
                     ELYEYFNDQLRAFQIPVETGEFGTDMLVSIQNDGPVTIIYESVDGKVV"
     gene            complement(5855..8044)
                     /locus_tag="PTC08_000687"
     CDS             complement(5855..8044)
                     /locus_tag="PTC08_000687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional (p)ppGpp
                     synthetase/guanosine-3',5'-bis(diphosphate)
                     3'-pyrophosphohydrolase"
                     /protein_id="HDK5682215.1"
                     /translation="MNNEYPYSVDEVLHKAKQYLDKEQYEYVLKSYHIAYKAHEGQFR
                     KNGLPYIMHPIQVAGILTEMHLDGPTIVAGFLHDVIEDTPYTFDDVAEMFNVEIATIV
                     DGVTKLKKVKYRSKEEQQAENHRKLFIAIAKDVRVILVKLADRLHNMRTLRAMPREKQ
                     IRISKETLEIYAPLAHRLGINTIKWELEDIALRYIDNVQYFRIVNLMKKKRSEREAYI
                     ENAIENIRKEMDIMDIAGDINGRPKHIYSIYRKMMKQKKQFDQIFDLLAVRVIVHSIK
                     DCYAVLGLVHTLWKPMPGRFKDYIAMPKQNMYQSLHTTVVGPNGDPLEIQIRTFEMHE
                     IAEHGVAAHWAYKEGKQVDKDNENYNKKLNWLKDIAETDHTSSDAQEFIESMKFDLQS
                     DKVYAFTPASDVIELPYGAVPIDFAYAIHSEVGNKMIGAKVNGKIVPIDYVLQTGDIV
                     EIRTSKHSYGPSRDWLKIVRSSSAKSKIKSFFKKQDRSSNIEKGKFMVEAELKEQGFR
                     PEELLTEKNIKIVNDKYNFANEDDLYASVGFGGVTALQIVNKLSERLRIEHKQKALNQ
                     AQEVTKAAPIKDSITTDSGVYVEGLDNVLIKLSKCCNPIPGDRIVGYITKGHGIKVHR
                     TDCPNIKNENERLIDVEWVKSKDASQKYQVDLEVTAYDRNGLLNEVLQAVNSTSSQLI
                     KVAGKSDVDRNAVINLSIMVKNVHEVYKVADKIKQLGDIYTVTRVWN"
     gene            complement(8401..8919)
                     /locus_tag="PTC08_000688"
     CDS             complement(8401..8919)
                     /locus_tag="PTC08_000688"
                     /EC_number="2.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009559512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine phosphoribosyltransferase"
                     /protein_id="HDK5682216.1"
                     /translation="MDLKQYVSEVKDWPKAGVNFKDITTIMDNGEAYGYATDQIVKFA
                     KEKNVDIVVGPEARGFIIGCPVAYAMGIGFAPVRKEGKLPREVIRYEYDLEYGSNVLT
                     MHADAIKPGQRVLITDDLLATGGTIEAAINLVEKQGGIVAGIAFIIELTYLNGMEKIK
                     DYDVMCLIKYDE"
     gene            complement(8931..11216)
                     /gene="recJ"
                     /locus_tag="PTC08_000689"
     CDS             complement(8931..11216)
                     /gene="recJ"
                     /locus_tag="PTC08_000689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded-DNA-specific exonuclease RecJ"
                     /protein_id="HDK5682217.1"
                     /translation="MIKSKFQWQTDTNRQSMDDVLVEQYKLTPLMRYILESKGYTEAT
                     QLAQVLSASKDNMHNPSLMSDMDKAVKRIHTAIQNQEKILVYGDYDADGVTSTTIMVK
                     TLQQLGAIVGWYIPNRFTEGYGPSEPAFKNAYDEGVSLIITVDNGIQGHTEIEMVQNL
                     GVDVIVTDHHEIGDTLPAAYAIVHPMHPDYDYPFISLCGAGVALKLAQSLLGDVPNIF
                     WVYAMIGTIADLVSLTDENRFIVQHGLQLLNESPPVSIAAILNQAQFNDTVTEETIGF
                     IIGPRLNAVGRLDDAALAAELLMTDDAEEALFLAEQVEHFNVERKDIVQTIVDEAMVM
                     AEDAIQAGEHFLVLAKEDWHEGVLGIVASRIVETFHLPTMVLNIDHEQQHAKGSSRSI
                     TQVSMFEALSSQQTLISKFGGHHMAAGLTLPIDQVSALREGLNDWMRTHIDTTALQPI
                     QKVDVTIDVGHITVEQIQSIERLRPFGTDFKRPIIQVNGLTVLQSKGIGQQQAHLKMT
                     FVEQNLQALFWNQGALSSELMPNQHVDVTGELQINEWNGNRTAQMVLTDMKSNERQIL
                     DYRSKNKRLPVFEDDQHVCYLIHPNQDKTSAHEYYYGENIPQQYDKCVMRDLPLTMED
                     IKLSCHYLNTSQVYLVFQHDRSIYFEGLPQPADFKNCYKALYQKGQTDLQKDGVALSQ
                     FINVKPMMLKFILKVFLDLGIISQKNGIIEIVHSTDKQPITSSRVYQARVQRIEVEKQ
                     LLYEEFGAIKSWIENELARNE"
     gene            complement(11333..13612)
                     /gene="secDF"
                     /locus_tag="PTC08_000690"
     CDS             complement(11333..13612)
                     /gene="secDF"
                     /locus_tag="PTC08_000690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecDF"
                     /protein_id="HDK5682218.1"
                     /translation="MKKVSRLITFILLVVLLFAGMSATYKSVIKNVNLGLDLQGGFEV
                     LYQVNPLGDGEKIDNTAVQSTAKTLERRVNVLGVSEPKIQVEDQNRIRVQLAGVQDQN
                     QARKILSSQANLTIRDADDKVLLTGKDLVQGSAKQEFKQNTNQPAVTFKLKDSDKFKK
                     VTEEISKKQENVMVVWLDFEKGDSYEKEKTKEDPKFISAASVNQPINSTNVEISGGFQ
                     GEKGISEAKQIADLLNSGSLPVELKEIYSTSVGAQFGQDALDKTINASMIGIGIIFLF
                     MLLFYRLPGIVAVITLTTYIYLTMVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYE
                     RIKDEIRIGRTLKQAYKKANKSSFITILDANLTTVLAAAVLFFFGESSVKGFATMLLL
                     AILMSFVTAVFLTRVLLSLVVHSNVFKKKLWWFGVKQSQIHDINKGYDVHELSTPYDK
                     VDFMKWAKPLFALSGVVIVAGVIILAIFKLNLGIDFTSGTRVDLQSNQKLTQAQVEKT
                     MESIDLKPNQLSIGGSNNENASMQFKRDLNKDEVAKVTDTLKSQYGKEPSVNTVSPVI
                     GQELAKNAMLAVIIASIGMIIYISLRFEWRMGIASIISLLHDAFMIIAVFSLFRLEVD
                     ITFIAAVLTIIGYSINDTIVTFDRVREMLSKIKVITKEDQIDYIVNSSIRQTLTRSIN
                     TVLTVVIVVIALLVLGASSIFNFSLALLIGLLSGVYSSIIIAVPLWGMLKKRELRKSP
                     HHKLVVYKRKRTNEEKVLV"
     gene            complement(13754..14017)
                     /gene="yajC"
                     /locus_tag="PTC08_000691"
     CDS             complement(13754..14017)
                     /gene="yajC"
                     /locus_tag="PTC08_000691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HDK5682219.1"
                     /translation="MSSLISLLPLVLLFVVMWLFMIRPQQKRAKEHRQMVEQLQAGQR
                     VTTIGGIKGTVRAVDETSAVITVNGKGTELTFEKQAIKQVDPS"
     gene            complement(14034..15173)
                     /gene="tgt"
                     /locus_tag="PTC08_000692"
     CDS             complement(14034..15173)
                     /gene="tgt"
                     /locus_tag="PTC08_000692"
                     /EC_number="2.4.2.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016425271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(34) transglycosylase Tgt"
                     /protein_id="HDK5682220.1"
                     /translation="MPAVTYEHIKTCKQSGARLGIVHTPHGSFETPMFMPVGTKATVK
                     TMSPEELKQMNTKILLGNTYHLWLQPGNDIVKQAGGLHKFMNWDGPILTDSGGFQVFS
                     LSNLRKITEEGVEFRHHTNGSKLFLSPEDSIKIQNDLGSDIIMAFDECPPMPAEYDYV
                     KNSLERTTRWAERCLAAHQRPEDQALFGIIQGGEYKDLRQQSAEELVKLDFPGYAIGG
                     LSVGEPKPVMYEMVEHTEQFMPKDKPRYLMGVGSPDALIECSIRGMDMFDCVLPTRIA
                     RNGTCMTSTGRLVVKNAQFKDDFRPLDENCDCYTCQNYTRAYLRHLIKADETFGIRLT
                     TYHNLHFLLKLMENIRQAIREDRLLDFKEEFFEQYGLNVDNPKNF"
     gene            complement(15191..16216)
                     /gene="queA"
                     /locus_tag="PTC08_000693"
     CDS             complement(15191..16216)
                     /gene="queA"
                     /locus_tag="PTC08_000693"
                     /EC_number="2.4.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA preQ1(34) S-adenosylmethionine
                     ribosyltransferase-isomerase QueA"
                     /protein_id="HDK5682221.1"
                     /translation="MNIEEFDYVLPESLIAQTPLKQRDQSRLLYLNRDTGETEDLHFK
                     DITRFFQPGDTLVLNDTRVMPARLFGIKEETNAKVEMLMLTQIEGDDWEVLLKPAKRI
                     KLGQTLSFGEGKIKATCIKELDQGGRIMRLSYEGILQERLDELGEMPLPPYIKERLDE
                     KERYQTVYAKAAGSAAAPTAGLHFTDALLDDIRRQGVQIAFITLHVGLGTFRPVSVDH
                     IDDHEMHSEYYQMSQETADILNQTKAAGHRIISVGTTSTRTLETIRSQFDTFQATSGW
                     TNIFIYPGFEFKAIDGLITNFHLPKSTLVMLVSAFSSRQFVLSAYHHAVAEKYRFFSF
                     GDAMIII"
     gene            complement(16234..17217)
                     /gene="ruvB"
                     /locus_tag="PTC08_000694"
     CDS             complement(16234..17217)
                     /gene="ruvB"
                     /locus_tag="PTC08_000694"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002448957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HDK5682222.1"
                     /translation="MMDGHEQVDEHTFELSLRPERLRQYIGQSTIKSNLDVFIQAAKI
                     REEPLDHVLLFGPPGLGKTTLSHIIANEMDVNLRTVSGPSIERPGDLAAILTALQPGD
                     VLFIDEIHRLSSVVEEVLYPAMEDFFLDIIVGKGDEARSIRIDLPPFTLVGATTRAGS
                     LTSPLRDRFGVHLRLEYYTEEELTQIIIRTAEVLGTAIDEESAFEIAKRSRGTPRIAN
                     RLLKRIRDFQQVKQDDMIYIETTKHALKLLQVDDEGLDYIDHKMMACIIEQYRGGPVG
                     LDTIAVSIGEERVTIEDVYEPFLIQKGFLERTPRGRKATPYAYEHFKYTSP"
     gene            complement(17246..17845)
                     /gene="ruvA"
                     /locus_tag="PTC08_000695"
     CDS             complement(17246..17845)
                     /gene="ruvA"
                     /locus_tag="PTC08_000695"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HDK5682223.1"
                     /translation="MYAYISGKLTALHPTHIIVETTSGIGYEIQTPNSYRFQKNLDQT
                     VKVYTSLIVREDAQLLYGFIDQEEKDMFLSLIKVTGIGPKSALAILAASSPNEVKRAI
                     ENENDAYLTQFPGIGKKTARQIVLDLKGKVVVTEEVSEGLLDIATEQEDLAVQEALLA
                     LEALGYSKRELKKVEKAMQQQIFSDVDEAVKYGLKQLIS"
     gene            complement(17859..18302)
                     /locus_tag="PTC08_000696"
     CDS             complement(17859..18302)
                     /locus_tag="PTC08_000696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACT domain-containing protein"
                     /protein_id="HDK5682224.1"
                     /translation="MKHQFYIIREDVLPYVVKRVLQVKSSLKADQSLTIQEAVDMHDC
                     SRSAFYKYRDTIFPLEDVQQQTEVFTIILFVTDKVGILAQILEKLSELNLSVLTIHQS
                     VPTDQKASITLSLDGRNAKWGPYQIINELRQMENVYNVDIIGMNM"
     gene            complement(18330..19622)
                     /gene="obgE"
                     /locus_tag="PTC08_000697"
     CDS             complement(18330..19622)
                     /gene="obgE"
                     /locus_tag="PTC08_000697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020444729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase ObgE"
                     /protein_id="HDK5682225.1"
                     /translation="MFVDQVKISLKAGDGGNGITAYRREKYVPFGGPAGGDGGRGASV
                     VFQVDEGLRTLMDFRYQRHFKAKKGDNGQSSNMHGKNAEDLVLKVPPGTIIKDVETGQ
                     TLADLVEHGQSAVVAKGGRGGRGNSRFATPKNPAPDFSENGEPGEEIDVTLELKLLAD
                     VGLVGFPSVGKSTLLSIVSKARPKIGAYHFTTIQPNLGVVETRDQRSFIMADLPGLIE
                     GASEGVGLGHQFLRHVERTKVIVHVIDMSGMEGRDPYEDYQIINQELKAYAQRLEDRP
                     QIVVANKMDMPDAEAQLEMFKEQLNDETVTIVPISSYTRENIDQLLYEIANTLEEVKD
                     IDFSAKEEEVGVNRVLYKHTPSQDKFTITRDDDGAYVVSGNAIERMFKMTDFNSEPAI
                     RRFARQMRSMGIDDALRERGAENGDIVRILGGEFEFVE"
     gene            complement(19751..20035)
                     /gene="rpmA"
                     /locus_tag="PTC08_000698"
     CDS             complement(19751..20035)
                     /gene="rpmA"
                     /locus_tag="PTC08_000698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009382703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="HDK5682226.1"
                     /translation="MLKLNLQFFASKKGVSSTKNGRDSESKRLGAKRADGQFVTGGSI
                     LFRQRGTKIYPGENVGRGGDDTLFAKIDGVVKFERKGRDKKQVSVYAVAE"
     gene            complement(20046..20366)
                     /locus_tag="PTC08_000699"
     CDS             complement(20046..20366)
                     /locus_tag="PTC08_000699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000633692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal-processing cysteine protease Prp"
                     /protein_id="HDK5682227.1"
                     /translation="MINVDIKLNDEGQITDVIMDGHADYGEHGQDIVCAGASAVVFGS
                     VNAIIGLTSERPDIDYSEDGGYFHVRAVDTNNEQAQLILQSLLISLQTIEEEYNEYIK
                     LNLK"
     gene            complement(20369..20677)
                     /gene="rplU"
                     /locus_tag="PTC08_000700"
     CDS             complement(20369..20677)
                     /gene="rplU"
                     /locus_tag="PTC08_000700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000457386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="HDK5682228.1"
                     /translation="MFAIIETGGKQIKVEEGQEIFVEKLDVNEGDTFTFDKVLFVGGD
                     NVKVGAPTVEGATVTATVNKQGRGKKITVFTYRRRKDSKRKKGHRQPYTKLTIDKINA
                     "
     misc_feature    complement(20689..20762)
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00559"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="ribosomal protein L21 leader region; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /db_xref="RFAM:RF00559"
     gene            complement(20798..21313)
                     /gene="mreD"
                     /locus_tag="PTC08_000701"
     CDS             complement(20798..21313)
                     /gene="mreD"
                     /locus_tag="PTC08_000701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreD"
                     /protein_id="HDK5682229.1"
                     /translation="MKSIYYILVAILMFYLDTVLTFLSPIIIGGHRFILVPHLVFLFL
                     VLITVYKNTSIALILGVLLGTVHDLFFGQIYGVYLFGYIVSILFADKFLKVFFRDHVM
                     VYVMTLIGIVFLEVFVVMLYLVVGLVDFNLIQFIVFRILPTLLLNAILLIFLYFAANY
                     FLNPKRSIDTK"
     gene            complement(21313..22149)
                     /gene="mreC"
                     /locus_tag="PTC08_000702"
     CDS             complement(21313..22149)
                     /gene="mreC"
                     /locus_tag="PTC08_000702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreC"
                     /protein_id="HDK5682230.1"
                     /translation="MSNFFKNNKLVVLFCALILFIALIGLSIRSHAQSVPEQYVSDTT
                     SFGQRVFSYPIHFIAGSISDIFHKTEKPTNKEKQLEAENERLKSENKNLKKELDMSDI
                     SKYEPITAAVIARQPDQWLNTIVIDKGKKSGIKENMAVMTADGLVGRVAKVNQFSSQI
                     HLITTKGRTNRLSVNVQHDGHEVFGLIDHFDEKTNHLIISDIDNNEKIKAGDKVVTSG
                     LGDQLPKGLYIGEVKKVQNDQYGLSKQVAIETGANINHFDHVFIAKRDPKTIVNDEGD
                     GS"
     gene            complement(22360..22500)
                     /locus_tag="PTC08_000703"
     CDS             complement(22360..22500)
                     /locus_tag="PTC08_000703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682231.1"
                     /translation="MSDNHQAQQSNEQLKAQNLFAKWRKDETLYKEDEEKSHAQQSEE
                     SS"
     gene            complement(22586..23062)
                     /locus_tag="PTC08_000704"
     CDS             complement(22586..23062)
                     /locus_tag="PTC08_000704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4930 family protein"
                     /protein_id="HDK5682232.1"
                     /translation="MRIIKSLVKLFMMIVLLIALVFAVLKFVPNFKNEPWNPVGNEEV
                     YQVTDDEGYLVPLNGRRYIQSENDIFRNIPKSQMRNVFNWIDKYEFMQVNEMTRMGYD
                     QEFLIAERDTQFILYRFGDDAMRVYTTEHDLYYDLNQLGASIQMKPLSAYQQADDD"
BASE COUNT         6824 a         4966 c         3716 g         7569 t
ORIGIN      
        1 ccattttatt tatctttaat acgttgtaca gtaatatctt tcaaaatgtt attacataca
       61 taacttgcac aaattaaacc gacgacactt ggcacataag cattggatga tggcggcatt
      121 tgtgctttac ggtttttacc ttgcgcatcc ccaactaccg ctttcacatc ttcacgaatc
      181 acaattgggc tttcacctga aaatacaact ggaaccccct ttttaatccc tttttgcttt
      241 aatttatttc gaatgatacg cgcgatagga tccgtatgtg tttttgaaat gtcagcaatt
      301 tcaaattgtg ttggatctgt tttgttcgct gcacccatac tagaaatgat ttgaatgtcc
      361 cgcgctaaac attgttccat taagtgcact ttataaataa tagtatcact cgcatcaaca
      421 acataatcga tatcataatc ttcaaaaagt tgttcgtacg tttcttccgt gtaaaacata
      481 tgtaatgggg tcactttaca atcagggtta attaagcgaa tacgttcttc catcaaactc
      541 actttacttt gtcctactgt tgtcgttaac gcatgcaatt gacggtttac atttgtaata
      601 tctacatcat ctttatctat taaaataata tgcccgatgt tcgtacgcgc taaagcttct
      661 gcagcaaaag aacctacccc accgacacct aatacagcga ctgttgtttg ttttaatttg
      721 ttgagccctt cttgtccgat tgccagttcg ttacgagaaa attgatgttt catattaaac
      781 tcctttaatt acaaattcac ataccatttt aaataagcac ataaaaaata cgcaagacac
      841 gaagccttgc gtaccgatag atccgttatg ccgtagttgt aaagtgcttg atcattttgg
      901 cctgctatat acaggtgggt gccctgtttc ttgttttgca cgtcctccta aagaggcgtg
      961 tgcgctgcaa gaaaacccat tgggctccct gatcaaagag tgttaggtca aaatacataa
     1021 agcgaactta cgaacactac agatgactat cttatgaatt aatcatatca caatttaatg
     1081 attattcaag aaaaaagttt gcacactgtg tatttaaatt aatgtttgat acgtaatgat
     1141 aattcgtcta attgtctttc tgataccgga ctcggtgcat ctgtcattaa atctgtcgca
     1201 gatgctgttt tagggaacgc aatcgtatca cgtaggtttg tacggccact taaaatcatg
     1261 acgaaacggt ctaaacctag agcgataccg ccatgtggag gcgcaccata tttaaacgca
     1321 tctaataaga aaccgaattg ttcttgcgct gcttcatcag agaatcctaa tgctttaaac
     1381 atacgttgtt gaagttcacc atcatgaata cgaatcgatc caccacctaa ttcgaaacca
     1441 tttaatacaa ggtcataagc ttgggcttgc gcttgttcag gtgctgtttc taataaatca
     1501 atatcttcta ctttaggtga tgtgaatgga tggtgtgctg caacgtaacg acgtgcttct
     1561 tcatcgtatt caagtaatgg ccaatctgtc acccataaga aattatattg ttctgggtca
     1621 atgagtccac gttcttttcc aagtttatta cgcaatgcac ctaaactttg ggcaacgaca
     1681 tctttagaat cagcaacaaa taagactaag tctcctgctt tagcgcctgt taatgcttgt
     1741 aatttcgtaa catgagcgtc ttcaaagaaa cgagcgattg gaccgtttaa accatcttct
     1801 actactttca cccatgctaa acctttggca ccataaatat ttacaaattc tgttaaaccg
     1861 tcaatatctt tacgtgtata gtcagctgca gcattttcaa caacgagcgc tttcacttga
     1921 ccaccacttt ccactgcacc tttgaatact ttgaagtcca taatttgacc taattctgag
     1981 acgtctaaca actccatacc aaaacgtgta tcaggtttat ctgtaccata gcgtgacatt
     2041 gcttcagtat acgtcatgcg tgggaaggca tcagtcatct caatgccttt tacatccgct
     2101 agcacgtttt tcaccatcgc ctcacctaat tgcatcacgt cttcttgctc aacaaagctc
     2161 atctcaatat cgatttgcgt aaattcaggt tggcggtcag cacgtaagtc ttcatcacgg
     2221 aaacatttga cgatttggta atatttatca aaaccactga tcattaacag ttgtttaaac
     2281 aattgtggtg attgtggtaa cgcataaaat tcaccgtcat gtacacgtga aggcacgaga
     2341 tagtcacgcg caccctctgg cgtagatttt gttaatacag gcgtttcaac atcatagaaa
     2401 ccatcgccgt ctaaaaattg acggattgaa cgtgtgattt ggtgacgcat cttaaaagtt
     2461 tgcgctaatt tttcacgacg taaatcgagg taacgatatt ttaaacggat attttcatca
     2521 acatttaaat tttcttcatt aattgaaaac ggtggtgttt cagattgatt aattatttca
     2581 atagatttcg cttgaacttc cacttgtcct gttttaattt taggattaat tgtttcatcg
     2641 tctctttttg taacagtccc tgtaatttca acaacatatt cagagcggat tcgttcagcg
     2701 acttcaagcg cttcttttga aaaggctggg ttgaatacga cttgtacata accttctcta
     2761 tctcttacgt ctacaaagat aaggccacct aaatcacgac gattatgcac ccaccctttc
     2821 aacgtaactt cttgttctaa taattcttct gtcactgaac cacagtatgt cgtgcgcttt
     2881 gccattattc tttacctcca tgaatataac tttctatttc ttcaaatttc atcgtttgtg
     2941 attcacctgt cgccatatgt ttcacagcga cttccccggc ttcaagttct tgatctccaa
     3001 tcacaatcgt atacgttgca ttcaatcgat ctgcttgttt catttgacct tttaacttgc
     3061 gagataaata atctttatct actgaaatgc cagcgtgtct gaggcgatta agaagtgtta
     3121 ctgcgaaatc atctgctttt tctcccatcg ttgctacaaa caaatcaatg tgctgcattt
     3181 gtgggaattc aatcccttct tcttctagtg ctaataataa tctttcaata cttaacgcaa
     3241 aaccgatacc cgtttcgctt ggtccatcta acaattcaag caagccattg taacggccac
     3301 caccacataa agtcgtaatc gcaccatcat aggcttcatt atccatcatc aattcaaatg
     3361 cagtgtgcgt gtagtaatcc aaacctctta ctaatttggg atccacttca taaggcacac
     3421 ctagacgatc taagtgtgat ttgaccgctt cgaaataatc tttggagtaa tcatttaaaa
     3481 agtcagtaat tgacggagct gtttgaattt caggctgatg acgatccact ttacaatcta
     3541 aaatacgcat aggattcgtt ttgatacgtt gttgacagtc cttacaataa ttgtgaatca
     3601 ctggttggaa atgttcacgt aatgcatttt gataatctac gcgtgactct gcatccccta
     3661 cactattgat cactaatttt aattttttca aaccgaatga ttgataaatg tgcatgacca
     3721 tagctagcac ttctgcatcc atacttgggt tttcagcacc aatcgcttct acgccaaatt
     3781 gattaaattg acggtaacgc cccttttgtt ttctttcata gcgaaacatt ggaccattat
     3841 aatacaattt caccggctgg ttcggtaagc cttgcatttt attttcaata tagctacgta
     3901 cgaccgcagc tgttccctca ggacgtaacg taatactacg atcaccttta tctttgaacg
     3961 tgtacatttc cttttgtaca acatcggtag agtcccccac accgcgcgca aataaatcgg
     4021 tactttcaaa aataggcgtt ctgatttctt gataattata aacttccatc aatttgtgca
     4081 attggttttc gatatagcgc cactttgtcg tttcttcagg taaaatatct tgtgtcccac
     4141 gtggaatgtg aatcatcttt atcgctcctt ttcatctcta ttcttaactt cagccatttg
     4201 tgcgaataaa aaaatgcccc ctgtatgcac taaacataca agggacgtac tttattatgc
     4261 cgtgttgcca ccctaattaa gaacaatcaa atagagactg ttcttcactc taggctctta
     4321 acgcgagcga cacgacctta ctttcataaa gtacctttcc ttgtgttcat ctcactaagc
     4381 acgacggtct atctttcagc cattggatag actctcttct gacatcgttg gttgcttagt
     4441 tcattcaaga atacaaacgg tgttaaatat aaaattcatt gttaatcata cctgtttttt
     4501 caattagttt caagacatta acttaaaaaa taactttcta acccgtcgac aatcgcttgt
     4561 tcaacgattt gacgatgatt tttgtctttc atcatcacgg tgtcagtcgg gttactaata
     4621 taacccagtt caagtaacac tgcaggcatt tctgtttgtc gtaacacttg ataattttct
     4681 tgtctcgtgc ctctattcga taacattgct ttcttttgta tgcttgcatt taatgtttgc
     4741 gcgagacctt cttgttgctc atgaaaccaa tagacagtcg caccattggc attcggtgtt
     4801 tctagagcat cattatgaat actaataaaa acatcacctt taagattacg gtcttttaat
     4861 ttaacatatt catccgttga acgcgtcatt ttcacttttg cgcccttctt ttcaagcaac
     4921 gatttcagtt ctaaccctgt tttcaatgtg atatcttttt ctaaagtttt gtcaccttgt
     4981 cgactcgaag caccttgatc gctaccccca tgacctggat caaggacaat cgttttatct
     5041 ctcaatggat tcgcatgtgg attgacatct gcgggtatgt cgagattcgt atgccatccc
     5101 gcaatccatc ccttttgctt gccattagct gaacggactt caatccattt accttgctta
     5161 ccaatttgaa gaaattcatc gcctttatgc acttgataca gtactggata cgctgcgttt
     5221 ggacctgttc gtatttccgc gtcctcgatt aaattgatat gatcatcatc actatgcctc
     5281 aacacaaaat atgacacgac aagaatgccc actaatgcaa tcgtgaagca cgcgccataa
     5341 aaacgttgcg gatggatgcg tttttgtttt aaccactgat caaccttttt catacgactt
     5401 tgccatctac actctcataa ataatcgtta caggaccatc attttgtata ctgacaagca
     5461 tatctgttcc aaattcacct gtctcaactg gaatttgaaa tgcacgtagc tggtcattaa
     5521 aatactcata cagttcattt gcttgatcag gtgccatcgc ttgtgtaaaa cctgggcgat
     5581 ttccttttct cacatccgca tacaatgtaa attgcgaaat agataaaatc tcgccattga
     5641 tttgttgaat atttaaatta agtttttcgt tctcatcttc aaaaattcga gagttcgcaa
     5701 tttttttcgc taaaactttc gcatctgctt gagtgtcccc ttcaccaata ccgacgagta
     5761 gacaaaatcc ttgttgtatt gtgcgctcta tttgatgatt tttcacactt gcagattgaa
     5821 ctctttgtac aacgattttc atccttatgc actcctaatt ccaaactcgc gtcactgtgt
     5881 aaatatcccc gagttgttta attttatctg caactttata aacttcatgt acatttttta
     5941 ccataatact taaattaata acagcatttc tatcgacgtc cgattttcct gcgactttta
     6001 tcaattgact tgaagtactg ttcactgctt gaagtacctc attgagtaag ccattgcgat
     6061 catatgcagt cacttctaaa tcaacttgat atttttgtga agcatcttta gatttcaccc
     6121 attctacatc gattaaacgt tcattttcgt ttttaatatt cgggcaatct gtacgatgaa
     6181 ctttaatgcc atgacctttc gtaatatagc cgacaattcg gtcaccagga atcggattac
     6241 agcattttga taatttaata agcacattat ctagtccttc tacatagacg cctgaatctg
     6301 tcgtaatcga atctttaatc ggtgcagctt ttgtcacttc ttgcgcttga ttcaatgctt
     6361 tttgtttatg ttcaatgcgt aagcgctcag acagtttatt tacaatttgt agtgctgtca
     6421 caccaccaaa tccaactgaa gcatataaat cgtcttcatt agcgaaattg tatttatcat
     6481 tcacaatctt aatatttttt tcagttaata actcttctgg tctaaatcct tgttctttca
     6541 attctgcttc gaccataaac ttcccttttt caatattgga cgagcggtct tgctttttga
     6601 agaaactttt tatcttactt ttcgcacttg aagaacggac aatttttaac caatctcgac
     6661 ttgggccata cgaatgttta ctcgtacgaa tttcaacaat gtccccagtt tggagtacat
     6721 aatcaatcgg tacaattttt ccgttaactt tggcaccaat cattttattt cccacttcac
     6781 tatgaatggc atacgcaaaa tcaataggta ctgcaccata aggtaactcg atgacatcac
     6841 ttgccggcgt aaaagcatac actttatcac tttgtaaatc gaacttcatc gactcgataa
     6901 attcttgggc atctgaggac gtatgatccg tttctgcaat atcttttaac cagtttaact
     6961 ttttattata gttttcgttg tctttatcaa cttgcttgcc ttctttataa gcccagtgtg
     7021 ccgcaacacc atgttctgca atttcgtgca tctcaaaagt acgaatttga atttcaaggg
     7081 gatctccatt agggcctact acagtcgtat gcagagattg atacatattt tgctttggca
     7141 tcgcaatata atctttaaaa cgccctggca tcggtttcca tagagtatgt accaggccta
     7201 aaacagcata acaatcttta atcgaatgga cgatgacgcg gacagcaagt aaatcaaaaa
     7261 tttgatcgaa ttgctttttt tgcttcatca ttttgcgata aatactataa atatgtttcg
     7321 gacggccatt aatatcacca gcaatatcca taatatccat ttctttgcgg atattttcaa
     7381 tcgcattttc aatatacgcc tcacgctcac tccgcttttt cttcatgaga ttaacgattc
     7441 tgaaatactg tacattgtca atatacctta aagcaatgtc ttcaagttcc catttaattg
     7501 tattaatccc taaacgatgt gctaatggcg cataaatctc taacgtctct ttagaaatgc
     7561 gaatttgttt ctcacgtggc atcgcacgca atgttcgcat attatgtaaa cggtctgcca
     7621 atttcactaa aatgacacgc acgtctttag cgatggcaat aaataatttt ctatgatttt
     7681 cagcttgttg ctcttcttta gaacggtact tcaccttttt caatttggtt acgccatcta
     7741 caatcgttgc aatttctaca ttaaacattt ccgcgacatc atcaaaagta tatggcgtgt
     7801 cttcaatcac atcatgtaaa aaaccagcaa caatcgtagg cccatcaaga tgcatttctg
     7861 ttaggatacc tgcgacttgg atggggtgca taatatatgg taaaccgttt ttacgaaatt
     7921 gtccttcgtg tgccttataa gcgatatgat aacttttaag cacgtattca tactgctctt
     7981 tatctaaata ttgtttcgct ttatgtaaaa cttcgtcaac actatatgga tattcgttat
     8041 tcatatggtc acccccacgt tatcaataat aatactatca tactacatga tttgaaataa
     8101 ttgaaccgaa tcataacgca ttattcagag aaagtccgta atttataaaa tatctttcat
     8161 tttccgtaca gaaagccatc aaaatatatc atttataacg aaaaagccct gttttgtgcc
     8221 aagagtctgc gaacgataaa aggaaaaatg acaccaaagt tcgatatgag aagtgataaa
     8281 gaacaacaca atatcattca agtcaagata ctcgtatata cctcacatac ttatcctttt
     8341 cttgataaat aaaaacaact ccacacatca ctgcatgaag ttgtttgaac atattaacaa
     8401 ttattcgtca tatttaatta agcacattac atcataatct ttaattttct ccataccatt
     8461 taaatacgta agctcaataa taaatgcaat acccgcaacg ataccacctt gtttttcaac
     8521 gagattgatc gccgcttcga ttgtgccacc tgtcgccaat aaatcgtctg taattaagac
     8581 acgttgacca ggtttaatcg catctgcatg catcgttaat acattactac cgtactctaa
     8641 atcatattca tagcgaatga cttcacgtgg taatttccct tctttacgta caggtgcgaa
     8701 tccaatcccc atcgcatagg ccactggaca accgataata aaaccacgag cttctggtcc
     8761 aacgacgata tctacatttt tttctttcgc aaacttaacg atttgatctg tggcatatcc
     8821 gtatgcttca ccgttatcca taattgtcgt aatatcttta aaattaaccc ctgcttttgg
     8881 ccaatctttt acttctgata catattgttt taagtccatt aaaatcctcc tcattcattc
     8941 cgtgccaatt cattttctat ccaagactta atggcgccaa attcttcata aagtaactgc
     9001 ttctctacct caatccgctg tacacgcgct tgataaacac ggctagaggt gatgggttgt
     9061 ttatctgttg aatgcacaat ctcgattata ccattttttt gagaaatgat tccaagatca
     9121 aggaaaactt ttaaaataaa tttgagcatc atcggtttaa cgttaataaa ttgacttaaa
     9181 gccaccccgt ctttttgtaa atcggtttgt cctttttgat acaatgcttt ataacaattt
     9241 ttaaaatctg caggctgtgg taatccttca aaataaatcg aacggtcatg ttgaaacact
     9301 aaatacactt gagatgtatt taaataatga caagataact taatatcctc catcgttaaa
     9361 ggtaagtcac gcatcacaca cttgtcatac tgctgtggta tgttttcacc gtagtaatat
     9421 tcatgcgctg atgttttgtc ttgattcgga tggattaaat aacaaacatg ttgatcatcc
     9481 tcaaatactg gcaaacgttt atttttacta cgataatcta aaatttgacg ttcattactt
     9541 ttcatatctg ttaaaaccat ttgtgccgta cgattgccat tccattcatt aatctgaagt
     9601 tcgcctgtga catcaacatg ttggttaggc attaactcac ttgataacgc accttgattc
     9661 caaaataatg cttgtaagtt ttgttcgaca aaggtcatct ttaagtgcgc ttgttgttgt
     9721 ccaatacctt tactttgtaa cacagtcaga ccgttaactt gaataatcgg tcgtttaaaa
     9781 tctgtcccaa acggtcgtaa acgctcaatg gattgaattt gttccactgt aatgtgacca
     9841 acatctatag tgacgtccac tttttgaatc ggttgtaacg cggtcgtatc aatgtgcgtg
     9901 cgcatccaat cgtttaatcc ttcacgcaat gcagaaactt ggtcgatagg taaagttaaa
     9961 cctgccgcca tatggtgtcc accaaatttt gaaattaatg tttgttgtga tgataatgct
    10021 tcaaacattg acacttgcgt aatactacga gaagaacctt ttgcatgttg ttgttcgtgg
    10081 tcaatattta ataccattgt tggtaaatgg aaggtttcca caattcttga ggcaacaatt
    10141 cccaggacgc cttcatgcca gtcttctttt gcgagaacta aaaagtgttc gcctgcttgg
    10201 attgcatctt cagccatgac catagcttca tcaacaatcg tttgtacaat atctttccgt
    10261 tcaacattga aatgttcgac ttgctcagct aaaaagagtg cttcttctgc atcatctgtc
    10321 atgagcaatt ctgccgcaag tgccgcatcg tctaaccgtc ctacagcatt taacctcggt
    10381 ccaatgataa agccgatcgt ttcttcagtc actgtatcat taaattgcgc ttgattgagg
    10441 atagccgcaa ttgaaacggg tggactttca ttcaataatt gcaaaccatg ttgaacaata
    10501 aagcgatttt catctgttaa agaaacaaga tccgcaatgg tacctatcat ggcataaacc
    10561 caaaatatat tcggaacatc cccgagcaaa ctttgagcta atttcaatgc tacaccggca
    10621 ccacacaagc taataaatgg atagtcataa tctggatgca tcgggtgaac aatcgcatac
    10681 gccgctggta atgtatcacc tatttcatgg tgatcagtta caatgacatc cacacctaaa
    10741 ttttgaacca tttcaatttc tgtatgacct tgtatgccat tatctaccgt aatgatgaga
    10801 gaaacccctt catcatacgc atttttgaac gcaggctcac tcgggccgta gccttcagta
    10861 aaacggttag gaatatacca accaacaatt gctccaagtt gctggagtgt cttgaccata
    10921 atcgttgtag acgtcacacc atctgcgtca taatccccgt acactaaaat tttttcttga
    10981 ttttgaatcg ctgtatgtat acgtttgacg gctttatcca tgtcactcat caaacttgga
    11041 ttatgcatat tgtctttaga agctgatagt acttgtgcga gttgtgttgc ctcagtatag
    11101 cctttacttt ctaaaatata gcgcatcaaa ggggttaatt tatattgttc aaccaatacg
    11161 tcgtccatcg attgacgatt tgtatcggtt tgccattgaa atttagattt tatcatatca
    11221 ttcaccgcca ctttctccac acagtattat atcgaaaatt catcagaata aaaagaacga
    11281 gagactaaga catctgatca gtcttaaccc ctctttgtaa aatgtgtgaa atctatacta
    11341 atactttttc ttcattcgta cgtttacgtt tatacacgac aagtttatga tgaggtgatt
    11401 tacgtaattc gcgtttcttc aacatgcccc atagtggtac ggcaataatg attgaagaat
    11461 atacaccaga caatagtccg attaatagcg cgagtgagaa gttgaaaata cttgacgcac
    11521 ctaacacgag taaggcgata accacgatga ctactgtcaa cactgtatta atggaacgcg
    11581 tcaatgtttg gcgaatagaa ctattaacaa tgtagtcaat ttggtcctct ttcgtaatga
    11641 cttttatttt cgataacatc tcacgtacac ggtcaaacgt tacaatcgta tcattgatcg
    11701 aataaccgat aatcgtcagt accgctgcaa taaacgtaat gtcaacctct agtctgaaca
    11761 aactgaagac cgcaataatc ataaatgcat catgtaacaa ggatatgata gaggcaatac
    11821 ccatacgcca ttcgaaacgt aacgaaatgt aaatgatcat gccgattgaa gcaataatta
    11881 cggctaacat cgcatttttc gctaattctt gtccaatgac tggtgaaacc gtattgactg
    11941 acggttcttt accatattgc gatttcaatg tatctgttac ttttgcgact tcatctttat
    12001 tcaagtcacg tttaaattgc attgaagcat tttcattatt gctaccaccg atagatagtt
    12061 gatttggttt aagatcaatc gattccatcg ttttttcaac ttgtgcttgt gtcaattttt
    12121 ggttactttg taagtcaaca cgtgtacctg atgtaaaatc aatccctaaa ttcaacttga
    12181 atatcgcaag aatgatgaca cctgctacaa tcacgacgcc actcaatgca aataacggtt
    12241 ttgcccattt catgaaatct actttatcat aaggcgtgct taattcatgc acatcataac
    12301 ctttgttaat atcatgaatt tgtgattgtt taacaccaaa ccaccataat tttttcttaa
    12361 agacattaga atgtaccacg agtgataata aaacacgtgt taaaaataca gctgttacga
    12421 aactcatcag aatcgcaagt aataacatcg tcgcgaaacc tttgactgaa ctttcaccaa
    12481 agaagaaaag taccgctgcc gctaatacag tagttaagtt ggcatcgaga attgtaataa
    12541 acgaactttt attcgctttc ttatacgctt gctttaatgt gcgaccgata cgaatttcgt
    12601 ctttaatccg ttcgtacata atgatgtttg catcgacggc catcccgaca ccaagaacga
    12661 gtgcggctaa gcctggtaat gtcagcacac cagaaataaa gttaaatgca accatagtta
    12721 agtaaatgta cgtcgttaac gtaatcacag ctacaatacc tggtaagcga tagaatagta
    12781 gcataaataa gaaaataatg ccgataccaa tcatagatgc attaattgtt ttatctaaag
    12841 catcttgtcc aaattgcgca cctactgatg ttgagtaaat ttcttttaat tctacaggaa
    12901 gtgaacctga atttaataag tcagcaattt gtttcgcttc agaaatacct ttttcacctt
    12961 ggaacccacc agaaatttca acgttagtcg aattgatcgg ttggtttaca gaagcggcag
    13021 aaataaattt aggatcttct ttcgtttttt ctttttcata actgtcgcct ttttcgaaat
    13081 ctaaccaaac gaccatcaca ttttcttgct ttttagaaat ttcttctgtc acttttttaa
    13141 acttatcact gtcttttaat ttgaaagtca cagcgggttg attcgtattt tgtttaaact
    13201 cttgcttagc tgaaccttgc acaagatctt tacctgttaa taaaactttg tcatctgcat
    13261 cacgaatcgt taagttcgct tgtgaagaca aaattttacg cgcttggttt tggtcttgta
    13321 cccctgccag ctgaacgcgg attcggtttt gatcttcaac ttgaatttta ggttctgata
    13381 ccccgagaac attgacacga cgttctaacg ttttagctgt cgattgtact gcagtgttat
    13441 caattttttc accatctcca agaggattaa cttggtacaa cacttcaaat ccaccttgaa
    13501 ggtcaagtcc taagttaaca tttttgatta cacttttata tgtcgcactc atgcccgcaa
    13561 acaagagtac tacaagtaat ataaaggtaa tcagtctact tacttttttc acatgaacac
    13621 ctcatttaat cttatgtcac aagcatactt gaattattcc gtttagtgca agtcattttg
    13681 agcaaccaat aaaaaagaca tggtgttaag ccatgtcctt tattgtatgc aaacttacgg
    13741 atacaatcaa tgtttatgaa gggtcaactt gcttaatggc ttgcttttca aaagtcaatt
    13801 ctgtaccttt accgtttaca gtaataaccg ctgatgtttc atctactgca cgaactgtac
    13861 ctttgatgcc gccgattgta gtcacacgtt gacctgcttg taattgttca accatttggc
    13921 gatgctcttt cgcacgtttt tgttgtggac gaatcataaa taaccacatc actacaaaca
    13981 gtaagactaa tggcaataaa ctaataagtg aagacataaa tcataactcc tatctagaaa
    14041 tttttcggat tatcaacatt cagaccgtat tgttcgaaaa attcctcttt aaaatctaaa
    14101 agacggtctt ctcgaatagc ctgtctaatg ttctccatta attttaacag aaaatgaaga
    14161 ttatggtaag tagtaagacg aataccaaat gtttcatctg ctttaatcaa gtgtcgtaag
    14221 tatgcacgcg tatagttttg acacgtataa caatcacaat tctcatctaa aggacggaaa
    14281 tcatctttaa attgtgcatt ttttacgacg aggcgccctg ttgatgtcat acaagtccca
    14341 ttacgtgcga tacgtgtagg caacacacag tcaaacatat ccataccacg aatactacat
    14401 tcaatcaagg catctggtga acccacaccc attaaataac gtggtttatc tttcggcata
    14461 aactgctccg tatgttctac catttcgtac atgacaggtt tcggttcgcc aactgacaat
    14521 ccaccaatcg cgtaaccagg aaaatcaagt ttcacaagtt cttcggcaga ctgttgacgt
    14581 aaatctttat attcaccacc ttgaataatg ccaaatagcg cttgatcttc aggacgttgg
    14641 tgcgctgcta aacaacgctc cgcccatcgt gttgtacgct ctaatgagtt tttcacataa
    14701 tcgtattcag caggcatcgg tggacattca tcaaatgcca taataatatc tgagcctaag
    14761 tcgttttgga ttttaataga atcttcaggt gagagaaata atttcgaacc atttgtatga
    14821 tgtcgaaatt ctacaccttc ttctgtgatt ttccgcaagt tacttaaact gaatacttgg
    14881 aagccgcctg aatctgttaa aatcggtcca tcccagttca tgaacttgtg taatcctcca
    14941 gcttgtttca cgatatcatt gccaggttgc aaccataaat gatacgtatt accaagcaaa
    15001 attttagtgt tcatttgttt taattcttca gggctcattg ttttcaccgt tgctttcgtt
    15061 cctactggca taaacatcgg tgtttcaaaa gaaccatgag gcgtgtgcac aattcctaaa
    15121 cgtgcacccg attgtttaca agtttttata tgctcatatg ttactgcagg catcatattc
    15181 tcctctcaaa ctaaataata atcatcgcgt caccgaaact aaaaaatcga tacttttcag
    15241 caactgcatg gtgatacgct gataacacaa attgacgtga actaaatgct gacacaagca
    15301 tcaccaatgt tgatttcggt aaatgaaagt ttgtaattaa accgtcaatt gccttaaatt
    15361 caaatccagg ataaataaaa atattggtcc aaccactcgt tgcttggaat gtatcaaact
    15421 gactccgaat cgtttcaagt gtacgtgtgg acgtcgttcc taccgaaata attcgatgtc
    15481 ctgccgcttt cgtttgattt aaaatatcgg cagtttcttg tgacatttga taatattcac
    15541 tatgcatttc gtggtcatca atatggtcaa cactgacagg tctaaatgtg cctaaaccga
    15601 catgcagtgt aataaatgca atttgaacac cttgacgtcg gatgtcgtcc aataaagcat
    15661 ctgtaaaatg tagtcctgct gtcggtgcgg ctgctgaacc tgctgcttta gcgtaaaccg
    15721 tctgatagcg ttctttttca tctaaacgtt ctttaatata tggcggtaat ggcatttcac
    15781 cgagttcatc tagtctttct tgcaaaatgc cttcataact caaacgcatg atacgcccgc
    15841 cttgatccaa ctctttaata caagttgctt taattttacc ttcaccaaag cttaacgttt
    15901 gtccaagctt aattcgcttc gccggtttta aaaggacttc ccaatcgtca ccttcaattt
    15961 gtgtcagcat taacatttct actttggcgt tcgtttcttc ttttatccca aacaaacgtg
    16021 ctggcatcac gcgcgtgtca ttgagcacta acgtatctcc aggttggaaa aaacgggtga
    16081 tatccttgaa atgtaaatcc tcagtctcgc ctgtgtcgcg gttcaaatat aataaacgac
    16141 tttgatctcg ctgtttaagc ggagtttgag cgatgagtga ttcaggtaat acataatcaa
    16201 attcttctat gttcaaaata atgactcctt cacttatggg ctcgtatatt taaaatgttc
    16261 gtacgcataa ggtgttgctt ttcggcctcg aggggtacgc tctaaaaacc ctttctgaat
    16321 gagaaatggt tcataaacat cttcaatcgt cactctttcc tcaccaattg agacagcaat
    16381 cgtgtccaaa ccaacaggac cacctcgata ttgttcaata atacaagcca tcattttatg
    16441 gtcgatataa tccaatcctt catcgtccac ttgaagtaat ttcaacgcat gctttgttgt
    16501 ttcaatataa atcatatcgt cttgtttcac ttgttgaaaa tcacgaatcc gtttcaacaa
    16561 gcgattggcg atacgtggcg tccctcggct tcttttcgca atttcaaaag cactttcttc
    16621 atcaatggca gttcctaata cttctgctgt tcgtataatg atttgtgtta gttcttcttc
    16681 agtataatat tcaagcctta aatgcacgcc aaaacgatct cgtagtggac tcgtcaaact
    16741 accggcacgt gtcgttgcac caactaaagt aaatggaggt aagtcaatac gaatacttct
    16801 tgcttcgtcg cctttaccta cgatgatatc taagaaaaag tcttccattg ctgggtaaag
    16861 cacttcttca acaacgctac ttaaacgatg aatttcatca ataaagagca catcaccggg
    16921 ttgcagagct gttaaaatgg cagctaaatc acccggtcgt tcaatcgacg gaccggaaac
    16981 agtacgcaaa ttgacatcca tttcatttgc gataatgtgt gacaaagtgg ttttacctaa
    17041 accaggtggg ccaaaaagta agacgtgatc taatggctcc tcacgaattt tagcggcttg
    17101 tataaacaca tcaaggtttg acttaattgt agactgacct atgtattgtc ttaaacgctc
    17161 gggtcttaat gacaactcaa atgtgtgttc atctacttgt tcatgtccat ccatcattcg
    17221 gtctcgatcc atatccatca cctctttatg aaatcaattg ttttaagcca tacttaacag
    17281 cttcatcgac atcactaaat atttgttgct gcatcgcttt ttccactttt ttcagttcac
    17341 gtttagagta tcctaacgcc tctaacgcaa gtaaagcttc ttgtacagca agatcctcct
    17401 gttctgtcgc tatatctaac aagccttcgc tcacttcttc cgtaacaacg actttacctt
    17461 ttaaatcaag cacaatttga cgggcagtct ttttaccgat acctggaaat tgtgtcaaat
    17521 aggcatcatt ttcattttca atcgcacgtt tcacttcatt gggcgaactt gctgctaaaa
    17581 tggctaacgc tgacttagga cctatcccag ttactttaat caaacttaaa aacatatcct
    17641 tttcttcttg atcaataaaa ccatagagca attgcgcatc ttcacgtaca atgagtgacg
    17701 tatacacttt caccgtttga tctaagtttt tttgaaagcg ataagagttc ggtgtttgaa
    17761 tttcataccc gataccagat gtcgtttcaa caatgatatg cgttggatgt agagctgtta
    17821 attttccaga aatatatgca tacattcaat agcgctcctt acatgttcat tccaataatg
    17881 tctacgttat atacattttc catttggcgt agttcattaa tgatttgata tggtccccac
    17941 ttcgcatttc gaccgtctaa agataacgta attgatgctt tttgatcagt agggacactt
    18001 tgatgaatcg ttaatacaga aaggtttaat tcggaaagtt tttcgagaat ttgagctaat
    18061 atacccactt tatctgtcac aaataaaata atcgtaaaaa cttcggtctg ttgctgaaca
    18121 tcttctaacg gaaatatagt atctctatat ttgtaaaacg cactacgcga acagtcatgc
    18181 atatctacag cttcttgaat cgtaagtgat tgatccgctt ttaaagagga tttcacttgg
    18241 agcacacgtt ttacaacata aggtaataca tcttcacgaa taatataaaa ttgatgtttc
    18301 atctaccatc gcaacctcca ctctcaatat tattcgacaa attcaaattc tccacctaga
    18361 atacgtacaa tatctccatt ttcagcgcca cgttctctca atgcatcatc aatacccatt
    18421 gagcgcattt gtctcgcaaa acgacgaatc gctggttcac tgttgaagtc agtcatttta
    18481 aacatacgct caatggcatt accacttacg acatatgcac catcatcatc acgtgtgatt
    18541 gtaaacttat cttgagacgg tgtatgtttg taaaggacac ggttgacgcc gacctcttct
    18601 tctttcgcag agaaatcaat atctttaact tcttcaagtg tattggctat ttcatagagc
    18661 aattgatcaa tattttctcg cgtataagac gaaatcggta caatggttac cgtctcatca
    18721 ttaagttgtt ctttaaacat ttcgagttgt gcttcagcat ctggcatgtc cattttattc
    18781 gcaacaacaa tttgtggacg atcttctaaa cgttgcgcat acgctttaag ttcttggttg
    18841 ataatttgat agtcttcata cgggtcacgc ccttccatgc cactcatatc aatcacatgc
    18901 acaatgactt tcgtacgttc cacatgtctt aaaaattgat gacctaagcc tacaccttca
    18961 gaggcacctt caattaaccc tggtaaatcg gccataatga agctacgttg gtcacgtgtt
    19021 tctactacac cgaggttcgg ttgaatcgta gtaaaatgat acgccccaat tttaggtctc
    19081 gctttagaaa caatcgataa taatgtagat ttacctacac ttggaaaacc aactaaaccg
    19141 acatctgcca acaatttaag ctctaatgtt acgtcaatct cttcacctgg ctcaccattc
    19201 tcactaaaat caggcgcagg gtttttaggt gtcgcgaaac gagaattacc acgtccgcca
    19261 cgtccacctt tagcaacaac cgcactttga ccatgttcaa cgagatcagc tagcgtttga
    19321 cccgtctcaa catctttaat aatcgttcca ggtggtactt ttaacacgag atcctcagca
    19381 tttttaccat gcatgttact actttgacca ttgtcacctt ttttagcttt aaagtgacgt
    19441 tgatatctaa aatccattaa tgtccgcaag ccttcatcca cttgaaacac gactgaagcc
    19501 ccacgtccac catcaccgcc agctggacca ccaaatggga catatttttc acgacggtat
    19561 gcagtaatcc cattaccgcc atcaccagct tttaatgata tttttacttg atcgacaaac
    19621 atgttttcac ctcttttact ttgatttctt taataatgct tatctatcac gttatattat
    19681 ataacgataa gttcatttaa tataaaaaat aaacaccaga agttaccttc tggtgtcaaa
    19741 gattgacaaa ttattcagca actgcataaa cagaaacttg ttttttgtct cgacctttac
    19801 gttcgaattt aacaacgccg tcgattttag cgaataatgt atcatcgcca ccacgaccta
    19861 cgttttcacc tgggtaaatc ttagttccac gttgacggaa taagatagaa ccaccagtaa
    19921 cgaattgacc gtcagcacgt ttagcaccta aacgtttaga ttcagagtca cgaccgtttt
    19981 tagtagaact tacccctttt ttcgatgcga aaaattgtaa gtttaatttt agcatgagtt
    20041 acacctcact tcagatttaa tttaatatac tcattatatt cttcttcaat tgtttgtaaa
    20101 gaaataagta atgattgaag tattaactga gcctgctcgt tattcgtatc cacagccctc
    20161 acatgaaaat acccaccatc ttcagaataa tcaatatctg gacgttcaga agttaagcca
    20221 ataatggcat tcacactccc aaaaacaact gccgatgcac ctgcacaaac aatatcttgt
    20281 ccgtgttcac cataatctgc atgaccatcc ataatgacat ctgtgatttg accttcgtca
    20341 tttaacttaa tatcaacatt aatcataatt atgcattaat cttgtcgatt gttaatttag
    20401 tgtaaggttg acgatggcct tttttacgtt tagagtcttt acgacgacgg taagtgaaaa
    20461 cagtgatttt cttaccacga ccttgtttgt taacagttgc tgtcactgta gcaccttcaa
    20521 ctgtaggcgc gccaacttta acgttgtctc caccaacaaa taaaacttta tcaaaagtga
    20581 aagtgtcacc ttcatttacg tctaatttct caacgaaaat ctcttgacct tcttctactt
    20641 tgatttgttt tccacctgtt tcaataatag caaacatact ctgcacctcc tatttataag
    20701 tcacgccata cataggtgac ataatgtact taaaacctat gtttgagcgg ttgtatgtag
    20761 ctacgaacta ctcaactatt gcatcatacc attcgtttta cttcgtgtca atagaacgtt
    20821 taggatttaa aaaatagttt gcagcaaagt aaaggaatat cagtaaaatc gcattgagca
    20881 ataatgtcgg cagtatgcga aatacgataa attgaatgag attgaaatca actaagccga
    20941 caactaaata aagcataaca acaaaaactt ctaaaaaaac aataccaatc aacgtcatca
    21001 catagaccat cacatgatca cggaaaaata cttttaaaaa cttatcagca aatagaatgg
    21061 atacgatata accaaatagg tagacaccat aaatttgtcc gaaaaacaag tcgtggacgg
    21121 tacctaataa tacaccaaga attaaagcga tactggtatt tttataaacc gtaatcaaca
    21181 ctaaaaataa aaacacgaga tggggtacta aaatgaagcg atgcccccct atgataatcg
    21241 gtgataagaa agttaaaaca gtatctaaat agaacatgag tattgcaacg agaatatagt
    21301 aaatagattt cattatgagc cgtcaccctc atcattaaca atcgttttag gatctctctt
    21361 tgcaataaag acatggtcaa aatggttaat attcgcaccg gtttcaatcg caacttgttt
    21421 agacaaaccg tattgatcat tttgaacttt tttcacttct cctatgtaaa gccctttagg
    21481 taactgatca cctaagccac tcgtcacgac tttgtctcca gctttaatct tttcattatt
    21541 atcaatatca ctaataatga gatgattcgt tttctcatcg aaatgatcaa ttaaaccaaa
    21601 aacttcatgc ccatcatgtt gtacgttcac agataagcga tttgtgcgcc ctttagtcgt
    21661 gattaaatga atttgagatg aaaattgatt cacttttgcg acgcggccga ctaaaccatc
    21721 tgctgtcatt actgccatat tttctttgat gccagatttt ttccctttat caatgacaat
    21781 cgtatttaac cattggtcag gttgtcgcgc tatgacagct gcagtaatgg gttcatattt
    21841 agaaatatca ctcatatcta attctttttt gagattttta ttttctgatt taagacgttc
    21901 attttcagct tctaattgtt tttctttatt cgttggcttt tcagtcttat gaaaaatatc
    21961 cgagattgac ccagcaataa aatgaattgg ataggagaag accctctgtc caaaagaagt
    22021 ggtatcacta acatactgtt caggaactga ttgtgcgtgc gaacgaattg ataatccaat
    22081 taaagcgata aatagtatta atgcacaaaa caacacaacg agtttgttgt ttttaaaaaa
    22141 attggacaac ctcaacacct caaactatat ttcaatgtat gtactgttat cattttatat
    22201 tactctggaa agtaaataaa gtcccatgct gtacaatatt gataaatatc tgtatgaaca
    22261 tgattatctc gtaacaattg acacggatga taataaaatt aaaacgagat agaaatagct
    22321 attacacctt aagccttcta tcccgcttca atctaactcc tatgatgatt cttccgattg
    22381 ttgtgcatga gatttttctt catcttcttt atacaacgtt tcatctttac gccatttcgc
    22441 aaataagttt tgagctttta actgctcatt gctttgttgc gcttgatggt tgtcagacat
    22501 cgcaaaatca cctctcaaaa atttgtctca tccatagcct aacttatcaa aagcgttatc
    22561 tcaagctgca cacctcaata tctgattaat catcgtcagc ttgttggtac gcacttagag
    22621 gcttcatttg aatggatgca ccaagttgat taaggtcata ataaagatca tgctctgttg
    22681 tatagacacg catcgcatca tcaccaaaac gatataaaat aaactgtgta tcgcgttctg
    22741 caattaaaaa ttcttgatca tatcccatac gtgtcatttc attgacttgc ataaattcat
    22801 atttatcaat ccagttaaat acattcctca tctgactttt aggtatattt ctaaaaatgt
    22861 cgttttcact ttgaatatag cgccgtccat ttaatggtac gagataccct tcatcatcag
    22921 tcacttggta cacttcttca tttccaacag gattccatgg ttcatttttg aaattcggta
    22981 caaactttaa tacagcaaaa acgagggcga tgagtaatac aatcatcata aataatttaa
    23041 caagactttt aattatccgc atgaatgccc tcctt
//
LOCUS       DANHOL010000026        22602 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.026, whole genome shotgun sequence.
ACCESSION   DANHOL010000026 DANHOL010000000
VERSION     DANHOL010000026.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 22602)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22602)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22602
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.026"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(86..643)
                     /locus_tag="PTC08_000705"
     CDS             complement(86..643)
                     /locus_tag="PTC08_000705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HDK5682233.1"
                     /translation="MKNIVFICGSLRKGSYNRIYMEKMMQQVPENWNIKEVSFKDVPV
                     YNFDLEGDQEPAAVTAFRDALGEADGIIIVTPEYNTGTPGPLKNAIDWASRIKNRGDR
                     SPLIDRPFAIAGCSPGATGSALSQAQLRQTLTAMNAHIMPGPKLIVGRVHELITEAGT
                     IEDERTIAYMKRFVNAFDAYVDRLN"
     gene            1026..1526
                     /locus_tag="PTC08_000706"
     CDS             1026..1526
                     /locus_tag="PTC08_000706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1440 domain-containing protein"
                     /protein_id="HDK5682234.1"
                     /translation="MRQRQWGMLLFTGIIGGILSGIVKLGWEVMFPPRTPERNATNPP
                     QELLQQMGFSHDFTHQTYTFSHMDLPWVSFIVHFSFSIVIAVIYCMLVKKYAAVAMGY
                     GAVFGIVIWVFFHLILMPLMHTVPAPWNQPFQEHLSELFGHIVWMMTIEGARQLYFYK
                     HQSELQ"
     gene            complement(1581..2414)
                     /locus_tag="PTC08_000707"
     CDS             complement(1581..2414)
                     /locus_tag="PTC08_000707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autolysin"
                     /protein_id="HDK5682235.1"
                     /translation="MLKGFTTMALSTVMTLSTLCFATTNVARTFFTTAFASTTSLQTT
                     ILKPQPMPNHQNLTLQSEQQQSRSSSEAFPPIPYPDVNQYIMKNHIPHSPVVKDARMN
                     TLPKIPYKYGTYIGVVIHEVGEDDRTLPQWVDRMYRTYDRAFVHAFVDEKEIRLTAPS
                     NYLAWGAGKQANPYFYHIELVRVYSFDDFARSVNNQAWLAAYMLKQQNIEPTLADDQE
                     GVGSVISHYAIMKYWGGTTHTDPIAYYNRWNYNMEKFFELVKYHYEQMEDHEVVTDKE
                     E"
     gene            3010..3333
                     /locus_tag="PTC08_000708"
     CDS             3010..3333
                     /locus_tag="PTC08_000708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4870 domain-containing protein"
                     /protein_id="HDK5682236.1"
                     /translation="MSTTTEKLLAFLSYFSVFFAPVLFPLIVWLVAPQPVSTHGKKAL
                     IYHILPTVFSIIAFACFMVLFNTSGAVLTTLLVIVIIITIVGSLYYLVYNLYAGIKVL
                     VVDQL"
     gene            3560..4431
                     /locus_tag="PTC08_000709"
                     /pseudo
     CDS             3560..4431
                     /locus_tag="PTC08_000709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020220079.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
     gene            4428..5159
                     /locus_tag="PTC08_000710"
     CDS             4428..5159
                     /locus_tag="PTC08_000710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDK5682237.1"
                     /translation="MIKHYFLTELRLLTRHKTRFVLAVLLPVTFYLLFTSILDLPQPI
                     MAKFNQEYMYNMTTFSLISFCLFSFPFDIIDERTRGWYKRLMRTPLTPAHYIGIKIGK
                     TMCQFALSIVIIFTIAAQFKGVQMAWTQWVSSGVLIWFGASLMLSMGALLAQMNDVQK
                     ASGVGNILYLALAVLGGLWFPVSQFPTLMQHVALVTPTYHLKQLSYTVSLHQSFPLTS
                     LIVLLVYCIIFLTLALYIRQRSETI"
     gene            5156..6256
                     /locus_tag="PTC08_000711"
     CDS             5156..6256
                     /locus_tag="PTC08_000711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HDK5682238.1"
                     /translation="MIKKLDLHYLNLSSLLYLLFPILNLWNPYIFGRHDVLVVVTCLF
                     VIVYTTLVVCHPLLSYGLMYTLLVLQYAGVIYFVYALNPMNALFLFYSAFAIPYVFKA
                     NVWSKEYVTFITTMVLCIIVSLIYYPDYYYTIALLIFFTVINLMMFANFKKIEQAHYQ
                     HEIEAKNKQLNFLIAEQERNRIGQDLHDTLGHVFAALSLKSELALKLIDTKPDRAKTE
                     IQSLNDISKETLNQIRAIINDLKIPSFAEEVASVETLLKDANLEFHFEGVQFAYALNP
                     AKQGLLAMVLREAMNNIIKHADATTVHVALSETTDGLQLDIQDNGCGIRDKSPIHLQS
                     IQARVEVLKGQLHIENNEGLHIQILIPRSVAL"
     gene            6253..6855
                     /locus_tag="PTC08_000712"
     CDS             6253..6855
                     /locus_tag="PTC08_000712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002439610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HDK5682239.1"
                     /translation="MIRVVLAEDQTMLRQAMVQLMQLHDTIHVVADVGNGQAALETVQ
                     TTPVDVIILDVEMPGLTGLEVLQHIRAQAIDVKVIIVTTFKRPGYFETAVAHDVDAYV
                     LKERSVDELVQTIHHVIAGQKEYSDALMTSLVTERNPLTDKEQLVLKEIGKGLTSKEI
                     AQTLYLSDGTIRNYTSTIIDKLQADNRFDAWKKAHNKGWI"
     gene            complement(6983..7855)
                     /locus_tag="PTC08_000713"
     CDS             complement(6983..7855)
                     /locus_tag="PTC08_000713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HDK5682240.1"
                     /translation="MKKFWKWSIGIVILLIVVWVTYIAIYRNTSIANNPKHAKYIDSV
                     TPTLFLHGYGGTVNSEKFLVKEAENQGVTQDVITAHVDEAGEVKLKGHLDSDAINPIV
                     QVVLKENKEVDPDVNAEWFKNVLVALQTKYHIKNFNFVGHSMANMTFAQYMATYGKDT
                     ALPQLQRQVNIAGTFNGVLHMNEEVNEITLDAEGKPSRMNPPYQDLRVLKDVYKGKNI
                     DVLNIYGDLKDGTHSDGSVSNTSSRSLKYLLGGSAKTYRESEYVGPSAQHSELHDNEK
                     VARELIQFLWGKSL"
     gene            complement(7973..8452)
                     /locus_tag="PTC08_000714"
     CDS             complement(7973..8452)
                     /locus_tag="PTC08_000714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArgR family transcriptional regulator"
                     /protein_id="HDK5682241.1"
                     /translation="MKKSKRLDLVSMVVKEYDIHTKAEIVDYIEQHFGIRYSLATISR
                     DLNELKIYKMPSENQQRCYRQYNDNAPKEAKARLIDLYQEEIISLSIKDTYLIIKTTP
                     GFAQTVNFYIDQMNLKEVIGTIGGNDTILVITHSNELSKFVHYKLFDQTYETPHVKH"
     gene            8840..10075
                     /gene="arcA"
                     /locus_tag="PTC08_000715"
     CDS             8840..10075
                     /gene="arcA"
                     /locus_tag="PTC08_000715"
                     /EC_number="3.5.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine deiminase"
                     /protein_id="HDK5682242.1"
                     /translation="MEKNPIQVNSEIGTLKTVLLKRPGKELENLVPDHLSGLLFDDIP
                     YLKVAQEEHDKFAQVLRDEGVEVVYLEQLAAEAIADKAVREQFIDDILAESQKTVLGH
                     EKEIKALFKNLSDQELVDKIMAGVRKEEIQLEMNHLVEYMDDRYPFYLDPMPNLYFTR
                     DPQASIGRGMTINRMYWRARRRESIFMTYILAHHPRFKDADVPVWLDRNCPFNIEGGD
                     ELILSKEVLAIGISERTSAQAIERLARQILFDDQSTFTKVLAIEIPNSRSFMHLDTVF
                     TMIDYDKFTMHAAIFKEENQMNIFTIEKDETKQDIRISHSSQLKQTLEDALHVDNIQF
                     IPTGNGDAIDGAREQWNDGSNTLTIRPGVVVTYDRNYVSNQLLREHGVKVIEITGSEL
                     VRGRGGPRCMSQPLYREDI"
     gene            10112..11119
                     /gene="argF"
                     /locus_tag="PTC08_000716"
     CDS             10112..11119
                     /gene="argF"
                     /locus_tag="PTC08_000716"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HDK5682243.1"
                     /translation="MTDIQKPLNLKGRHLLKEDDFTKKEFSDLIDFAMTLKSYKQQGI
                     PHRYLEGKNIALLFEKTSTRTRAAFTVASIDLGAHPEFLGKNDIQLGKKESVEDTAKV
                     LGRMFDGIEFRGFSQATVEALAKYSGVPVWNGLTDAWHPTQMLADYMTIKENFGHLEG
                     IQLTYIGDGRNNVANSLLVAGPMLGVDVTICTPKSLFPAQDYIDIAERRAKQDGGSIK
                     ITDNIDEGVKGADVIYTDVWVSMGEESEFESRIQLLKDYQVNRALFDKTGKDDTIFLH
                     CLPAFHDTETVYGQKIKEEHGLTEMEVTDEIFRSPHSKVFDQAENRMHTIKAVMAATL
                     G"
     gene            11240..12670
                     /gene="arcD"
                     /locus_tag="PTC08_000717"
     CDS             11240..12670
                     /gene="arcD"
                     /locus_tag="PTC08_000717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine-ornithine antiporter"
                     /protein_id="HDK5682244.1"
                     /translation="MGGTEENKLNKTSLIGLVIGSMIGGGAFNIISDMGSHAGGLAII
                     LGWLITAVGMISLAFVFQNLTNERQDLDGGIYSYAQAGFGDFIGFSSAWGYWFAAFLG
                     NVAYATLLMSAVGNFFPTFEGGNTLPSIIIASLLLWGVHYLILKGVETAALINSIVTI
                     AKLIPILLVIVCMIVAFNFDTFKTGLLGMTSHPSQGFSWGDTLSQVKSTMLVTVWVFT
                     GIEGAVVFSGRAKNKKDVGSATVIGLVSVLVIYFLMTVLAQGVIQQNHISALSNPSMA
                     AVLEHIVGHWGAVLVNIGLIISVLGAWLGWTLLAGELPFIVAKDGLFPKWFAKENQNK
                     APSHSLLITNILVQIFLISMLFTQSAYQFAFSLASSAILIPYTLSAFYQVKYTVQTKQ
                     RATTKQWLIGIIASIYTIWLVYAAGLDYLLLTMLLYVPGLVVYTIVQRNNQKPLKQID
                     YIFFMFILLLAIIGIVRLLTGAIDVF"
     gene            12686..13627
                     /gene="arcC"
                     /locus_tag="PTC08_000718"
     CDS             12686..13627
                     /gene="arcC"
                     /locus_tag="PTC08_000718"
                     /EC_number="2.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamate kinase"
                     /protein_id="HDK5682245.1"
                     /translation="MHKKVVIALGGNAIQTTDGSSEAQKKAIRATMQTLKPLFKTDYD
                     IVISHGNGPQIGNLLIQQQKADSPETPAMPLDTCGAMTQGMIGFWIETEVNRVLAEVN
                     RDRRAATVITRVEVDINDPRMAHPTKPIGPFYTEAEIEKVKNENPQSIYKEDAGRGYR
                     KVVPSPLPVSILEHQLISTLVENNNIIIACGGGGIPVVKKDDTYEGVEAVIDKDFASE
                     RLAQLIDADVLMILTNVENVYLNFNQPDQKQLTQIDVASLKQYARDGNFAEGSMRPKI
                     EAAINFVENGEGRRAVITNLDKAYEAFKGKAGTQIYQ"
     gene            13646..14374
                     /locus_tag="PTC08_000719"
     CDS             13646..14374
                     /locus_tag="PTC08_000719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HDK5682246.1"
                     /translation="MGEKSYNYTIIDTSLIQNDIHTFLEQFAAFINIPSIVLQPYKNE
                     FIVRQYNKGQVIYYSSDELTHIYFLIDGYIVRDHYNIHGDLYRVINKDQQLYPLHNLF
                     QDKVTHEICSALTDCIVMTIPIDLIEYLCKNHHKVFIQLFKCLCESEQQLTEYNMALT
                     AKHAKSRVIKVLIYLCHTIADDHDEFYEIKPFLTIQMVSDLASVSRETTGHIINALKA
                     ENLLVKNKKNWLFSKVLVDQHEDD"
     gene            14883..15617
                     /locus_tag="PTC08_000720"
     CDS             14883..15617
                     /locus_tag="PTC08_000720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020220080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent protein deacylase"
                     /protein_id="HDK5682247.1"
                     /translation="MAHHIDQLKHIIDHSERIVFFTGAGVSVASGVPDFRSMGGLFDE
                     ISKEGYSPEYLLSTDYLEDDPIGFMRFCHKRLLLEDKLPNPVHKWIAELEQRQHSLGV
                     ITQNIDGLHSDAGSQHVDELHGTLNRFYCPNCQQQYTKNEVMTHQLIQCQQCGHVIRP
                     DIVLYGETLDQTTMSNALQKITHADTLIVLGSSLVVQPAAGLISHFQGEHLVIINKDT
                     TPYDQQANLVIHNDMVSIVEELTRNG"
     gene            complement(15781..16251)
                     /locus_tag="PTC08_000721"
     CDS             complement(15781..16251)
                     /locus_tag="PTC08_000721"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase"
                     /protein_id="HDK5682248.1"
                     /translation="METIYLAGGCLWGVQAFVKTIPGVVMTEAGRANGDSATLDGPYD
                     GYVECVKTIFDPSKIDVTRLIDDLFEIIDSYSLNQQGEDVGPKYRTGIYSEQSHHLIE
                     ARQYIQNRADAEYIMVELAPLTNYIPSADVHQDHLDKYPNDYCHIPDVLMRKYR"
     gene            complement(16499..17665)
                     /locus_tag="PTC08_000722"
     CDS             complement(16499..17665)
                     /locus_tag="PTC08_000722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArgE/DapE family deacylase"
                     /protein_id="HDK5682249.1"
                     /translation="MSVLSSDEKIQILRDIIEIQSVNDYEVEVAQYLKNLFDKYQINA
                     QILKLENSETRANLVAEIGSGHPVLGVSGHMDVVNVGDITTWQYEPFQLTEDEDGRLH
                     GRGTADMKAGLAALVISMIEIKEAGLLKKGTIRLLATAGEEIASEGAAQLREQGYTDD
                     LDALLIAEPSQNGMFYAHKGSMHFELTSRGKSAHSSMPELGINAITPVVNFIYHLNEA
                     FQHVHERNHIIGPPTMASTVIQGGDQVNSIPDKATALFNVRTVTEYNSQSFMALFQSI
                     QERVSDDHHRLTLQAYGDRSPVVTTGENRLVNLAQDISEKYFGEKVKKIASTGVTDAS
                     LLLKDKDIHFPFITFGPGETSQAHQVDEYVQKDVYLTFIQLYQEMFTTYLNDEK"
     gene            complement(18231..19364)
                     /locus_tag="PTC08_000723"
     CDS             complement(18231..19364)
                     /locus_tag="PTC08_000723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fic family protein"
                     /protein_id="HDK5682250.1"
                     /translation="MTLQGIDFLPPQVTLENALDLYKSVAEINSLIGALNTQINHSLV
                     STQMIQLLTLSESVQSTRIEGTQVTFLDIIEETPNEQKSTEVTEVLNYKDALDYGVMQ
                     IKNGNPITTRLIHELHKILMGRNTRGTTVSSGEFRKIQNFIGPSSNIKDAVYIPVPAH
                     EIDDYMTNWEHYINRVKHPSFNQVLKEGYTLLDEQSDPLIKTAIMHAQFESIHPYLDG
                     NGRLGRILIVLNMMAESAVNAPIFFVSEELERERLRYYNLLNSVRGSHADWYKWIHFY
                     LRACQRMILNLQTKLENIETLAKEGLKKINQAAGSKIMDVWFYTFTTPNVTVKYAAKS
                     LNMSENTARMHLNTLVELGMIDVDHARKRNKVYVNYDLLQILR"
     gene            complement(19555..19751)
                     /locus_tag="PTC08_000724"
                     /pseudo
     CDS             complement(19555..19751)
                     /locus_tag="PTC08_000724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008297710.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
     gene            complement(19877..20233)
                     /locus_tag="PTC08_000725"
     CDS             complement(19877..20233)
                     /locus_tag="PTC08_000725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002467555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682251.1"
                     /translation="MKRLVVSALFSMIFYLSGVSHFKKEAMFLKIVPSYLPFKRAIVK
                     YSGILELMIAVYVLLGKNRRAVRKIVQGFLWLVFPANIYAARKRMSYKDESSSVIQHV
                     IRLPLQFVAIKLAKWL"
     gene            complement(20244..21248)
                     /locus_tag="PTC08_000726"
     CDS             complement(20244..21248)
                     /locus_tag="PTC08_000726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002434486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent oxidoreductase"
                     /protein_id="HDK5682252.1"
                     /translation="MNNEQIVLATRPKGVPQDDVFRFETIDVKAPEAGEIQIESIYIS
                     VDPYMRGRMNDTKSYIQPYALDEPLKGHIVGKVQQSNHEQFSVGDYVTGILPWRRINT
                     VSGESVTRLDVRDVPLYLYLSVLGMPGMTAYTGLLQIGKPQANETVVVSAASGAVGSV
                     VGQIAKIKGARVVGIAGGEKKTAYLTNELGFDAAIDYKSSDFATQLEAAVPDGVDVYF
                     ENVGGAVSDEVFKHLNQFARVPVCGAISSYNADVEELGPRIQGTLVKNQALMQGFVVA
                     QFSDYFKEAQEQLSQWITEGKIKAEFTIDEGFDQVPTAFRKLFTGENFGKQIVKVAEE
                     "
     gene            complement(21252..21917)
                     /locus_tag="PTC08_000727"
     CDS             complement(21252..21917)
                     /locus_tag="PTC08_000727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017723717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HDK5682253.1"
                     /translation="MKSLIIGANGGVGQHLVRKLKVRQMDFTAGVRNMSQVETLKSKG
                     IDAVYIDVEKQSIDELATQFKQFDQILFSVGSGGSTGADMTMIVDLDGAIKAIKASEQ
                     VGNQHFIMVSTYDSRREAFDASGDLKPYTIAKHYADVYLRQTNLKYTIVHPGALTNEP
                     ETQKFQISEQFKGVQHPTVTREDVAEVLVFVLSDKSLQGREFQIINGELPLTEAIQKY
                     LEE"
     gene            complement(21942..>22602)
                     /locus_tag="PTC08_000728"
     CDS             complement(21942..>22602)
                     /locus_tag="PTC08_000728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="type 1 glutamine amidotransferase
                     domain-containing protein"
                     /protein_id="HDK5682254.1"
                     /translation="VTNISKYPDTERATGAWFSEVTHFAKDFYDAGYEVDLVSPKGGY
                     VPLDPASLKSEMMTAEDWAYYTDLNYMNQFGHSLSPEEVNPDEYSAIYFAGGHGVVWD
                     LRDNPQLNEIALSIYNNNGVLASVCHGAVGLIDIKENGENIVKGKAVTGFTNSEEQAN
                     GTTPYMPYLLEDALVHVGAQFKKEADWQSYAVIDGRIVTGQNPQSGHAVAENVLKLLT
                     K"
BASE COUNT         6747 a         4622 c         4025 g         7208 t
ORIGIN      
        1 caatgcgcaa ttctcttaaa aacttgctta acatcaaaat taaaaaagct catgatagtc
       61 aacactacca tgaacttttt attaattaat ttaaacggtc aacatacgca tcgaacgcat
      121 tcacaaaacg tttcatgtaa gcaatcgtac gttcatcttc aattgttcct gcttctgtaa
      181 ttaactcgtg aacgcgacca acaatcaatt taggccctgg cataatgtgc gcattcatcg
      241 ctgttaatgt ctgtcttaac tgtgcttgtg acagcgctga tcctgtagca cctggtgaac
      301 aacccgcaat cgcaaacgga cggtctatta atggggaacg atcccctcta tttttaatac
      361 gagacgccca gtcaatcgca tttttcaatg gccctggtgt acctgtattg tactctggtg
      421 taacgatgat aatgccgtct gcttcgccta atgcatcacg aaatgctgtt acagctgctg
      481 gctcttggtc gccttcaaga tcaaagttgt aaacgggaac atctttaaat gatacctctt
      541 taatattcca attttcagga acttgttgca tcattttctc catataaatg cggttgtaag
      601 aaccttttct caagctacca caaataaata caatattttt catcttaatt ctcctttaga
      661 taatcatttt tcaaatctgc ttacgactga tattaaattt ggtactatca taacacaatt
      721 ttttacattt tactgactgt atgaattcat tataacttga ttaatctttt tcaacatatt
      781 tgtttatgtt gtatcttcca actatattga tgaacgttaa aggtcctccc tactgcaaat
      841 cacatggcat taaagttaca tccatatgct ctcgttataa cttttggtca caaactcgat
      901 tgaactttgt gtttcacgcc atttttcgcc atcaaacgtt caaaattatc ctaaaataat
      961 atattgataa aattttcaca tatcgctata ctttgaatat ctgatacaat gaggaggtcc
     1021 tgataatgag acaacgacaa tggggtatgt tgctctttac aggtataatt ggaggtatat
     1081 tatctggaat cgttaaactc ggctgggaag tcatgtttcc accgcgtaca ccagaaagaa
     1141 atgctacgaa tccaccgcaa gaattgttac aacaaatggg attcagtcat gatttcacac
     1201 atcaaactta tacattttcg catatggact tgccgtgggt gagctttatc gttcatttca
     1261 gtttttcaat tgttatcgct gtaatttact gcatgttagt gaaaaagtat gcagccgtcg
     1321 ctatgggtta cggggctgtt ttcgggatag tcatttgggt gttcttccat ttgattttaa
     1381 tgccactgat gcacactgtt cctgcaccat ggaatcagcc tttccaagag catttatctg
     1441 agttattcgg acatatcgtt tggatgatga cgattgaagg tgcccgtcaa ctttactttt
     1501 ataagcatca atctgaactt caataaaata aaacacgggc taggacatct tgacgttttc
     1561 ctagcccact cttcttattc tcattcttct ttatcagtca caacttcgtg atcttccatt
     1621 tgctcataat gatatttcac taactcaaag aatttttcca tgttgtaatt ccatctatta
     1681 taatacgcga tagggtctgt atgcgttgtg ccgccccaat atttcataat cgcataatga
     1741 ctaatgactg aacctacccc ttcttgatca tccgcgagtg ttggttcaat attttgttgt
     1801 ttcaacatgt atgctgcgag ccatgcttgg ttatttactg atcttgcaaa gtcatcaaag
     1861 ctgtatacgc gtacaagctc aatatgataa aaatagggat tggcttgttt ccccgctccc
     1921 caagctagat agttagatgg tgcagtgaga cgaatttctt tttcatctac aaatgcgtgg
     1981 acaaatgcgc gatcatacgt ccgatacata cggtccaccc attgtggtaa cgtgcggtca
     2041 tcttcaccga cttcatggat aacgacaccg atatatgtac catatttata cggaatttta
     2101 gggagtgtgt tcatacgtgc atcttttaca actggggaat gagggatatg atttttcata
     2161 atgtattggt tgacatcggg ataaggaatt ggaggaaacg cttctgacga tgagcgcgat
     2221 tgttgctgtt cactttgaag ggtcaagttt tgatggttcg gcataggttg aggttttagt
     2281 atagtggtct gcaagctagt tgttgatgca aaagccgttg taaaaaaagt tcgtgcaaca
     2341 tttgttgtgg caaagcataa tgtactcagt gtcattacag tagacaatgc catcgttgta
     2401 aaacctttaa gcattttaac cacacctttc tatcttttta attatttaaa atatagataa
     2461 tcctataaca cttttatata aaagatataa cgccgttcct tgttaaagtc aatactctat
     2521 cgattgtcga taaattattt tatgttgaga tatcgctcat tttcctttct catcgtagtg
     2581 tttatgttat tttctccatt catttttgta agtacactga gtatatgatt gttcatctgc
     2641 acgtttgaat ttatatacgc ctctttatct ttggtgtact gcggattatg attctcaatg
     2701 acaaaagttc aacacgcatc ttaataaggt cacccttgct atcaaacaaa atataatatt
     2761 tttaatccat tccgctacag tgctaagtat tttccattat tatgattaat tgatacttta
     2821 aactaaggct ccattttgat atcaacaact ttgaggtgca gttcaacatc aaaacgactc
     2881 acttttgagg aaacgtttaa cagacgcggt agtgtggaaa acataaaagg tatattttgt
     2941 aaaactctaa aataatcatc tcaatccaaa gaaagttatg attataatga caaaaaggag
     3001 agtgacacaa tgtcaacgac aacagagaaa ttattagctt ttctttcata ttttagcgta
     3061 ttttttgcac cggtgttatt tccattgatc gtatggttgg ttgcaccaca gcctgtgtca
     3121 acacatggaa agaaagcatt gatttatcac attttgccga ctgtattttc catcatcgct
     3181 ttcgcttgtt tcatggtgct ctttaataca agcggtgcgg tgctgacaac tttactcgtg
     3241 attgtcatca ttattacaat tgtcggttct ctctattact tagtgtataa cttgtatgct
     3301 ggcattaaag tattagttgt tgaccaactt taattgatgt ctctatacac attctattgg
     3361 cgacaataat tgagactttt acttgctttt aggctcggac attgatttgt tcgggctttt
     3421 gatttccact ttaacctctt catctcgctt ccactccaaa ttagtgacaa atgtcatatg
     3481 aatctcgtga caaacttcac tactacgcgc gcaactacaa acatacaata aacataacct
     3541 atccaaggat gtgatttata tgattcgaat agcgcattta acccaaacct atcaccaaaa
     3601 acctgttgtg aatgacgtct cttttccaat tcgtaccggc caatgtaccg cacttattgg
     3661 tccaaatggc tctggaaaaa ccacgcttat tgatatgatt atcggtgacc gtcatcctgt
     3721 acaaggcacg attgaagatc ctgaccatct tttaacctct gaacggttag gcgtgctgtt
     3781 tcaacaaagt cactttccag aacgtatgaa agtcattgaa ctgtatcact tgtttgcaca
     3841 ttgttatccg tcgcccttac cttttgagaa tgggtggccc ttacacggtt tacaaaaaaa
     3901 cagctccacc aatttgcgac tcaactttca ggtgggcagc aacgcattct tgactttgcg
     3961 ttaacactgg tcggtcaacc gcaatgtctt attttagacg aaccgacaag tgcaatggat
     4021 gtcgaaatgc gccaacattt ctggtccatt attcgtcagt tgaaagcaaa tggacgtacg
     4081 attttatata cgtctcatta catagaagaa gtggagcaaa tggcagatcg cgtcattgta
     4141 ctcaatcaag gatgtttagt gatggatgat acacctcaaa atattaaacg taaacaaggc
     4201 cattccatca tcacattacc gataccacca tctgaagcac tgatattaca gttgtctcgc
     4261 atcaaaccca tgccaacaaa tgatggtcaa cttcaaattg aaacagcgga tgtgcagcaa
     4321 acattaatcg agttactcgc actccatatt cctttgcaac atattgaaat tcatcaccat
     4381 tcactactcg agattatatt caaacaggac caaggcggtg tatcacaatg atcaaacatt
     4441 attttttgac agaactccga ctactcacgc gacacaaaac acgctttgta cttgccgttc
     4501 tattgccagt cacattctat ttattattta catccattct tgacctacct caacctatca
     4561 tggcaaagtt taatcaagaa tatatgtaca atatgacgac atttagttta ataagttttt
     4621 gcttgttttc tttccctttt gacattattg acgaacgcac acgcggatgg tacaagcgac
     4681 tcatgcgcac accacttaca cccgcacact acatcggtat aaaaattggt aaaacaatgt
     4741 gtcaatttgc actgtcgatt gttattattt ttacaatagc tgcacagttt aaaggcgtac
     4801 aaatggcgtg gacgcaatgg gtgagttcag gagttttaat ttggttcggg gcgagtctca
     4861 tgttgagtat gggggcatta cttgcacaga tgaatgatgt ccaaaaggcg agtggggtcg
     4921 gcaacatttt gtatttagct ctagccgttc tcggtggtct gtggtttcca gtgtcacaat
     4981 ttccgacctt aatgcaacat gtcgcactag tcacaccgac ctatcacctt aaacagttgt
     5041 cttacacggt tagtttgcat caatcttttc cactgacatc tttaatcgta ttattggtat
     5101 attgtataat tttcttaaca cttgcactct atattcgaca aagaagtgaa acgatatgat
     5161 taaaaagtta gatttacatt atttgaattt atccagttta ctttatttac tctttccgat
     5221 acttaactta tggaatccat acatttttgg gcgtcacgat gttttagtcg ttgtgacttg
     5281 cctctttgtc attgtctata cgacccttgt agtgtgtcat ccattactgt cttacggtct
     5341 gatgtatacg ttactcgtcc ttcaatatgc aggtgttatt tatttcgtat acgcgcttaa
     5401 cccgatgaat gcactgtttt tgttttatag tgcttttgcg attccttacg tttttaaagc
     5461 aaatgtatgg tccaaagaat atgtgacgtt cattactacg atggtgcttt gtatcattgt
     5521 gtcgcttatt tattatccag attattatta taccatcgcc ttattaatct ttttcactgt
     5581 gattaattta atgatgtttg caaactttaa aaaaattgag caagcacatt atcaacacga
     5641 aatcgaggct aaaaataagc agttgaactt tttaattgct gaacaagaac gtaaccgcat
     5701 cgggcaagat ttacatgata cactcggaca cgtttttgcg gcattaagct taaaatccga
     5761 gctagcactg aagttgattg atacgaagcc agaccgtgca aaaactgaaa tacaaagcct
     5821 aaacgacatt tcaaaggaaa cactcaatca aatacgtgcc attattaatg atttaaaaat
     5881 cccgtctttt gcggaagaag tggcatctgt agagacgttg ttaaaagatg caaatttgga
     5941 atttcatttt gaaggcgtac aattcgcata tgcattgaat ccagcaaaac aaggattact
     6001 cgcgatggta ctccgcgaag cgatgaacaa cattattaaa catgccgacg cgacaacagt
     6061 ccatgtggct ttatccgaaa cgactgacgg attgcagctc gacatccaag ataatggttg
     6121 cggcattcga gacaagtccc ctattcatct ccaaagcata caagcccgtg tcgaagtatt
     6181 aaaagggcaa ttacatatag aaaataatga aggactacac atacaaattc taataccgag
     6241 gagtgtggca ctatgattcg cgtcgtgtta gctgaagatc aaacgatgtt acgtcaagcg
     6301 atggtccaac tgatgcaact tcatgacact attcatgttg tggctgatgt gggcaatgga
     6361 caagctgctc tagaaaccgt ccaaacaaca cctgttgatg tgattatatt agatgtcgaa
     6421 atgcctggat taaccggcct tgaagtatta caacacattc gtgcacaagc catcgatgtg
     6481 aaggttatta ttgtcactac atttaaacgt ccaggctact tcgaaacagc ggtggcacac
     6541 gatgtcgatg catatgtatt aaaggaacgt tccgtcgatg agctcgttca gacgatacat
     6601 catgttatag caggtcaaaa agaatacagt gacgcgttaa tgacctcgct tgtgacagag
     6661 cgcaatcctc tcactgataa agaacaattg gtattgaaag aaattggcaa agggctgacg
     6721 agtaaagaaa ttgcgcaaac cctatattta tcagatggca ccatacgcaa ttatacatcg
     6781 accatcatcg acaaactcca agcagacaac cgcttcgatg catggaaaaa agcgcataat
     6841 aaaggatgga tatagcacga gactatactt tggcacatac ctaccataca ttcacctatc
     6901 ctaaaaaacg accacgcaca tcttcctata cgtgcggtgg tcgtttcatg ttcattcagt
     6961 tgtcatcatt ttcaaatgca tttcacagtg atttacccca caaaaattga atcagttcac
     7021 gcgcaacttt ttcattatca tgcaattcac tatgttgcgc acttggaccg acatattcgg
     7081 attcacgata cgttttcgca ctgcccccaa gtagatactt caatgaacga gaagacgtat
     7141 tcgatacact gccgtcagag tgcgtaccgt cttttaagtc tccgtaaatg ttgaggacat
     7201 caatattctt ccctttatac acatctttta atacacgtaa atcttgataa ggggggttca
     7261 tacgactagg tttgccctcc gcatcaagcg tgatttcatt cacttcttca ttcatatgca
     7321 gcacgccgtt aaacgtccca gcgatattca cttgacgttg caactgtggc aatgcggtat
     7381 ctttaccata cgtcgccata tactgcgcaa aagtcatatt tgccattgaa tgtccgacaa
     7441 aattaaagtt tttaatgtga tattttgttt gtaaagcaac taacacattt ttaaaccatt
     7501 ctgcattcac atctgggtct acttctttat tctctttcaa tacgacttgt acaataggat
     7561 taatcgcgtc actatccaaa tgtcctttta atttcacttc acccgcttcg tcgacgtgcg
     7621 cggtaatgac gtcttgcgtg acaccttgat tttccgcttc cttcactaaa aacttttcag
     7681 agttcaccgt cccgccgtaa ccatgcaaaa ataacgtcgg tgttacgcta tcaatgtact
     7741 tggcatgttt tggattattg gcgatagatg tattgcggta gatggctata tacgtcaccc
     7801 acacgacaat caatagtatc actataccaa tactccattt ccaaaacttt ttcatggatg
     7861 tcacctcttt atacgccctc gatgcactct catcgatgtt gactaaattt acctgattct
     7921 attgcaaaat ccatgaaaag tcaattttgt gcaattttcc tatatatcaa gactagtgtt
     7981 tcacatgtgg cgtttcatac gtttgatcga acagtttgta atgtacaaat ttggaaagtt
     8041 cattcgaatg cgtaatcact aagatcgtat cattaccgcc tatcgtcccg atcacttctt
     8101 ttaaattcat ttgatcgata taaaaattca ccgtttgcgc aaaaccgggt gtcgttttaa
     8161 taattaagta cgtatcttta atactgaggg aaattatctc ctcttgatac aaatcaatga
     8221 gtcttgcttt cgcttctttt ggtgcattgt cgttatattg tctgtaacat cgttgttggt
     8281 tttctgatgg cattttataa atcttcaact catttaaatc tcgactaatc gtagcaagac
     8341 tgtatcggat gccaaaatgc tgttcaatat aatctacaat ttctgctttc gtatgaatat
     8401 cgtattcctt tacaaccatc gatactaagt ctaatctctt actcttcttc atacttttaa
     8461 actccttaat ctgatgataa gtcagtcaga caaccataca catcattatc ataacaaaat
     8521 atgatattct cagatgtgaa ctttttggca cctctcaaaa cgcccttttc atattcatca
     8581 gacgcgcctc cccatcaaat ggatatccat acatcatatt gaatgaagca ccatctttca
     8641 ttgcgcgcct cacgacatat tcaatgatta ttcattctta tggaccattc aagtactcag
     8701 catgtataat ctatcaattt tgtgcattga atacatgatt tatatgaagt attagacatt
     8761 gttattgaga aaaaattcac aacacatata aagaaagcgc tttatacttt gggtgtatta
     8821 aaacaaagga ggcgcaacaa tggaaaagaa tcctattcaa gtcaatagtg aaatcgggac
     8881 attaaaaacg gttttactga agcgacctgg caaagaatta gaaaatcttg tgcccgatca
     8941 tctaagcgga ttactgtttg atgatattcc ttatttaaaa gtggcccaag aagaacacga
     9001 caaatttgca caagtgttaa gagatgaagg tgtcgaagtc gtctatctcg aacaattagc
     9061 cgctgaggca attgctgaca aggctgtacg cgaacaattt attgatgata ttttagcaga
     9121 atctcaaaaa acggtgctcg gtcacgaaaa agagattaaa gcacttttta aaaatttaag
     9181 cgaccaagaa ctcgtcgata aaattatggc cggcgtgcgt aaagaggaaa ttcagctcga
     9241 aatgaatcac ttagtggaat atatggacga cagatatcca ttttatttag accctatgcc
     9301 gaatctgtat ttcacaagag atcctcaagc ttctatcggc cgaggcatga cgattaatcg
     9361 catgtattgg cgcgcacgtc gcagagaatc gattttcatg acgtacattc tcgcacatca
     9421 ccctcgcttt aaagacgcag atgttccggt ttggttagac cgaaattgtc cattcaacat
     9481 tgaaggcggc gatgagttaa ttctttcaaa agaagtgttg gccattggta tttcagaacg
     9541 gacgtcagca caagcgattg aacggttagc ccgtcaaatt ttattcgatg accaatcaac
     9601 atttacgaaa gtgttggcga ttgaaattcc aaacagtcgt agtttcatgc atttagatac
     9661 ggtatttacg atgattgatt acgacaaatt cacgatgcat gccgctattt ttaaagaaga
     9721 aaatcaaatg aacatcttta cgattgaaaa agatgagaca aagcaagata ttcgaatttc
     9781 acattcaagt caattaaagc aaacacttga agatgcgtta catgtcgaca atatccaatt
     9841 catcccgaca ggtaacggcg atgcgattga cggtgcacgc gagcaatgga atgatggttc
     9901 aaatacattg acgattcgtc ctggtgttgt tgtgacgtat gaccgcaatt acgtttccaa
     9961 ccaactatta agagaacatg gtgtcaaagt aatcgaaatt actggtagtg aattagtgcg
    10021 cggtcgtggt ggcccaagat gtatgagtca acctttatac agagaagaca tttaaatatt
    10081 ttatcatctt attatagaaa ggattttcaa aatgacagac attcaaaaac cattaaattt
    10141 aaaaggcaga catttattaa aagaagacga ctttacgaaa aaagaattct cagacttaat
    10201 agactttgcg atgacattaa aatcctacaa acaacaagga atccctcacc gctatttaga
    10261 aggtaaaaat attgctttat tattcgaaaa aacatcgaca cggacacgcg ccgcttttac
    10321 cgttgcttct attgatttag gggcacaccc tgaattttta ggtaaaaacg acattcaatt
    10381 aggtaaaaaa gagtctgtag aagatactgc taaagtgtta ggccgtatgt ttgatggcat
    10441 tgagttccgt ggcttttcac aagcgactgt agaagcatta gcaaaatatt ctggtgtccc
    10501 tgtatggaac ggactcactg acgcttggca tccgactcaa atgttagccg actatatgac
    10561 cattaaagaa aactttggac atttagaggg tattcaactc acgtatattg gcgatggccg
    10621 caacaatgtc gctaattcac ttcttgtggc aggtccgatg ttaggcgtcg acgtaacgat
    10681 ttgtacacca aaatctttat tccctgcgca agactatatt gatatcgctg aacgtcgcgc
    10741 taaacaagat ggcggttcaa ttaaaattac tgacaatatt gatgaaggtg ttaaaggcgc
    10801 agatgtcatt tatacagacg tttgggtgtc tatgggtgaa gaaagtgaat ttgaatcacg
    10861 tattcaatta ttaaaagatt atcaagtgaa tcgcgcatta ttcgataaaa caggtaaaga
    10921 cgatacgatt ttcttacatt gtttacctgc attccacgat acggaaacgg tctatggtca
    10981 aaaaattaaa gaagaacacg ggctgactga aatggaagtg actgatgaaa tctttagaag
    11041 tcctcattcc aaagtctttg atcaagcaga aaaccgcatg catacaatca aagctgtaat
    11101 ggccgcaaca ttaggatagt tcaatagatt tgatataatt caaaagtcca gacatactta
    11161 ttacaatgaa ataatattaa aatcatttaa aataatatta aaactggact tttgattcta
    11221 tctaaaggag acatgacata tgggcggaac agaagaaaat aaattaaata aaacctcctt
    11281 aattggttta gtcattggct caatgattgg tggcggtgca ttcaacatca tttcagatat
    11341 gggcagtcac gctggcggat tagcgattat tttaggttgg ctcattactg cagtcggtat
    11401 gatttcactt gcctttgtct ttcaaaactt aacgaatgag cgacaagatt tagacggtgg
    11461 gatttacagc tatgcccaag caggttttgg tgactttatc ggcttttcga gtgcttgggg
    11521 ctactggttt gcggcgtttt taggtaatgt ggcctatgcg actttactca tgtctgcagt
    11581 cggcaacttt ttcccaacct ttgaaggcgg caacaccctt ccttctatta ttatcgcgtc
    11641 cttattattg tggggtgtgc attacctcat tttaaaaggc gtcgaaactg ctgcactcat
    11701 caacagtatc gtaacgattg ctaagttaat ccctatttta cttgtcattg tatgtatgat
    11761 tgttgccttt aattttgata cgtttaaaac aggactgtta ggaatgacaa gtcacccatc
    11821 acaaggattt agttggggag atacactctc tcaagttaaa agtactatgc tcgtaacggt
    11881 ttgggtcttt actggtattg aaggtgccgt tgtcttttct ggacgcgcta aaaataaaaa
    11941 ggatgtcggt tcagcaaccg tcatcggatt agtttctgta ttagtcatct atttcttaat
    12001 gaccgtctta gcacaaggtg tcatccaaca aaatcacatt tcagcacttt ccaatccttc
    12061 tatggccgct gtgttagaac atatcgtcgg acattgggga gctgtactcg tgaatatcgg
    12121 gctgattatt tcggttttag gtgcatggtt aggttggaca ctgttagccg gtgaattacc
    12181 gttcatcgtc gcaaaagatg ggctattccc gaaatggttt gcaaaagaaa atcaaaataa
    12241 agcaccgagt cattcattat taattacgaa tatattagtt caaatctttt taatcagtat
    12301 gctgttcaca caaagtgcgt atcaatttgc gttttcactt gcatccagcg ccattttaat
    12361 tccatataca ttgagcgcat tttaccaagt gaagtatacc gttcaaacga aacagcgtgc
    12421 aacaacaaag caatggctaa ttggtatcat cgcatcgatt tatacaattt ggctcgtcta
    12481 tgcagctgga ttagactatt tactattaac catgttgctt tatgtacctg gactggtcgt
    12541 ttatacgatc gtacaaagaa acaatcaaaa acctttaaaa caaatcgatt atatcttttt
    12601 catgtttatt ttattattag cgattatcgg catcgtcaga ctactcactg gtgccatcga
    12661 tgtattttaa tgaggagtga tttttatgca taaaaaagtt gtgatagctt taggtggcaa
    12721 tgcaattcaa acgacagatg gatcttcaga agctcaaaag aaggcgatac gtgcgacgat
    12781 gcaaacactg aagccattat ttaagaccga ctacgatatc gttatctctc atggtaatgg
    12841 accgcaaatt ggtaaccttc ttattcaaca acaaaaagcg gatagtcctg aaacccctgc
    12901 gatgccactc gatacatgtg gcgcgatgac acaagggatg attggctttt ggatagaaac
    12961 cgaggtgaat cgtgtattag cagaggtgaa tcgcgaccgt agagcagcaa ccgtgattac
    13021 acgtgtggaa gtggatatca atgatccgag aatggcgcat ccaacaaaac cgattggccc
    13081 attttatact gaagcagaaa tagaaaaagt taaaaacgaa aaccctcagt ccatctataa
    13141 agaagatgct ggaagaggtt atcgtaaagt ggtcccttcc ccgctccctg tatccatctt
    13201 agaacatcaa ctgatcagta cgttagttga aaacaacaac atcattatcg cttgtggcgg
    13261 cggtggaatt cccgtagtca aaaaagatga tacgtatgaa ggtgtggaag ccgtcatcga
    13321 taaagacttc gcaagtgaac gtttagcaca gcttattgat gcggatgtac tgatgatttt
    13381 aacgaatgtt gaaaacgtct acctcaactt caatcaacct gatcaaaaac aactgactca
    13441 aattgatgtc gccagtttga aacaatatgc acgtgacggt aattttgcag aaggttcaat
    13501 gcgccctaaa attgaagcgg ctataaattt tgtggaaaat ggagaagggc gtcgtgctgt
    13561 gattacaaac ttagacaaag cctacgaagc ctttaaagga aaagccggca cacaaattta
    13621 tcagtagtca taaggtggtg cttatatggg ggaaaagtca tacaattaca caataatcga
    13681 tacctcccta attcaaaatg acattcacac atttttagaa caattcgctg cctttattaa
    13741 tattccttcg attgtcttac aaccttacaa aaatgaattt atcgtaagac agtataacaa
    13801 aggccaagtg atatattatt catcagatga actgacacat atttattttt taatcgatgg
    13861 ttatatcgta cgagaccatt acaatattca tggtgacctc tatcgtgtga ttaacaaaga
    13921 tcaacaatta tatccgcttc acaatctatt tcaagataaa gttacacatg agatttgttc
    13981 tgcgctcacc gactgtattg taatgaccat ccctatcgat ttgatagaat atttatgcaa
    14041 aaaccatcac aaagtgttca ttcagctgtt taaatgttta tgtgaaagtg aacaacaact
    14101 gactgaatac aatatggcac tcactgctaa acatgccaaa tctcgtgtga ttaaagtgct
    14161 catttattta tgtcatacca ttgccgacga tcatgacgag ttttacgaaa tcaagccttt
    14221 tttaacgatt caaatggtga gtgaccttgc aagtgtttca cgcgaaacaa ccggacatat
    14281 tatcaatgcg ttgaaagcag aaaacttgct cgtcaaaaac aagaaaaatt ggttgtttag
    14341 taaagtactg gttgatcaac atgaagatga ttgaaaacta agattgagac tcgcactaaa
    14401 aattgagctg acttaaaaat attatgtatc cttgtcctca taatatgcat actatatttt
    14461 tatgatggcc ttcatggttt cgatttccga gggacttgcc tcaactcaat tcggcttgat
    14521 taaagggttc gctaggtggg tgccaaatta aattttcggc tgcgtctgat cccctaggag
    14581 tctaagccat atggtcaatc tttcatcaaa taggtaggat aagaataagt ttctgagtgg
    14641 agaaaagcaa aatttttact acatcatcca tatttacttt caatcatttg tttaatctaa
    14701 aatgaagacg aggctgggat agcatgattt cccggtctct ttctgtgttg aaatatatat
    14761 gactgtctca ccactcacct tgaattgtcg gtacaaccat cgttcgcacc cccgcgccta
    14821 ttttgttgtg atatgacttt tgataaaatg aaagtgacat tgataaatgg agtgattcaa
    14881 ctatggcaca tcatatcgat caattaaaac atatcatcga ccactcagaa cgcatcgtat
    14941 ttttcacggg tgcaggtgta tcagtcgcaa gtggtgtccc ggatttccgt tcaatgggtg
    15001 gtttgtttga tgaaatttca aaagaaggct actcaccgga atatttgttg agcaccgatt
    15061 atttagaaga tgacccaatt ggttttatgc gcttttgtca caaacgttta ctcttggagg
    15121 ataaattgcc gaatcctgtt cacaaatgga ttgccgaatt agagcaacgt caacactcat
    15181 taggtgtcat cacgcaaaat attgatggcc ttcatagtga tgcaggaagc caacatgtcg
    15241 atgaattaca tggcacactc aatcgctttt actgtccgaa ttgtcagcaa cagtacacga
    15301 aaaatgaagt catgacacat caactgatac aatgccaaca atgtggacat gtgattagac
    15361 cggatatcgt cctttatggc gaaacgctgg atcaaacgac aatgtccaac gcacttcaga
    15421 aaatcacaca tgctgataca ttgattgtgt tgggctcatc gctcgtcgtt caacctgcag
    15481 ctggactcat ttcacatttt caaggtgaac atcttgtcat tattaacaaa gacactaccc
    15541 cttatgatca acaagctaat ctggttattc ataatgatat ggtctctatt gttgaggagc
    15601 tcacaagaaa cggatgacct tatggtactt attgcggggg gaatatggcg cattgattat
    15661 gatttgaaaa cacaacactt ttataggtgt tattttcagt gatggcgatc tttcattaaa
    15721 cctatgtgcc ataaccattg tgatttctaa aatatacagt atcaatgact ttttaacacg
    15781 ctatcgatat tttctcatca atacatctgg aatatgacaa taatcattag gatatttatc
    15841 aaggtgatct tgatggacgt ccgcacttgg aatatagttt gtcagaggtg ccaattctac
    15901 cataatgtat tcggcatcag ctcggttttg aatatattgt cgggcttcaa ttaaatggtg
    15961 agactgctcg ctatagatac ctgtacggta tttcggccca acgtcttcac cttgttgatt
    16021 gaggctatac gaatctatga tttcaaatag gtcgtctatt aggcgagtca catcaatttt
    16081 tgacggatca aatattgttt tgacacattc aacgtagcca tcatacggcc catctaatgt
    16141 cgcactgtct ccattagcac gacccgcttc tgtcataacg acacccggta tggttttgac
    16201 aaatgcttgt acgccccata aacatccgcc tgcaagataa atggtttcca tcagtttcac
    16261 ttcctctcta aagattcatt aaaaaatgag catcaaatct gaatgagaaa gattaacgct
    16321 caattaaatc atcacacact acataagatg catagtctag gcgcctcatc gattaaatac
    16381 tcaaatcaaa atcaggcgta ttgtaaatcg tcatcctctc cacaatacgc ctgaatgaag
    16441 ccattattta atgctcccac atacatgaag cgcgattgag tatacgcttt ttcaaccttt
    16501 atttttcatc attcaaataa gttgtaaaca tttcctgata taactgaata aaagttaaat
    16561 aaacgtcttt ttggacatat tcatcaactt gatgggcttg tgatgtttca ccaggtccaa
    16621 aggttataaa tggaaaatga atatctttat cttttaataa aagcgatgcg tccgtaaccc
    16681 ccgttgaagc aatcttttta actttttcgc caaagtattt ttcgctgata tcttgcgcaa
    16741 ggttaaccag acgattttct cctgtagtga caacaggtga gcggtcccca tatgcttgga
    16801 gtgtgagacg atgatgatca tcgcttacac gttcttgaat cgattgaaat aacgccataa
    16861 aactttgact attgtattct gtcactgtcc gtacattgaa taaggctgtt gctttgtctg
    16921 gaatagagtt cacctgatcc ccaccttgga taaccgtaga ggccattgtt ggcgggccta
    16981 tgatatgatt acgttcatgg acgtgttgaa acgcctcatt caaatgataa ataaagttta
    17041 caacaggtgt aatggcattg atccctaact ctggcataga gctgtgcgca gatttacctc
    17101 tggatgttaa ttcgaaatgc atagaccctt tatgtgcgta aaacatacca ttttgtgaag
    17161 gttctgcaat caataaagca tccaaatcat cagtataacc ttgttctctt aattgcgctg
    17221 ccccttcact ggcaatttct tcaccagccg ttgctaatag acgaatcgtc cctttcttca
    17281 ataatcccgc ttctttaatt tcaatcatac ttattacgag tgctgcgaga cctgctttca
    17341 tatccgctgt gccacgacca tgtaatcggc catcttcatc ctccgttagc tgaaatggtt
    17401 catattgcca tgttgttata tctcctacat tcactacatc catatgacct gaaacaccaa
    17461 gaacggggtg ccctgagcca atttctgcta ctaagttcgc acgtgtctca ctattttcta
    17521 gttttaaaat ttgagcatta atttgatatt tatcaaacaa attttttaaa tactgagcca
    17581 cttcaacctc ataatcgtta actgactgga tttcgatgat gtcacgtaaa atttgaattt
    17641 tttcatctga acttaaaact gacatatccg tcacatcctt tcaaaaatgc gttaagtaga
    17701 ttcgtctaaa atattgttca ctgtcctccc aatcttaacg cttatgatac aaacttattg
    17761 tctcaaaaag gggggtgaat tacaatttgg ggcgcttatc taactaaatg cattcatgtc
    17821 actttcttaa ttcagctttg aaattaaaaa aacacttcta tgcaagatga gccacaaaag
    17881 agttggctat attaataatt ttaccttcct aacaacgttt tagcattttt aaacatgaat
    17941 ttttcttttt gttcatccgc gataaagtct actggcaaaa tttcacgctc tcaaacaatt
    18001 attcttagtt catagtcagc aatatcatcg tttacattac aacttcatca gttaatttgc
    18061 tttccaataa aaagacccca catcactctt aacgcaaaaa acacgaaatt ttgcgttaag
    18121 agtatgcggg gtttttatca gttcttttga gaaatgctgt catatcaacg tttttaagta
    18181 tttagctcct tttttgaata cttatcttac acacgagccc ttgtgttaac ttatctaaga
    18241 atttggagta aatcataatt cacatacact ttattacgtt ttcgcgcgtg atccacatca
    18301 atcattccta attcaacaag tgtgttcaaa tgcattctgg cagtgttttc actcatattc
    18361 aaacttttag ctgcatattt aacagtcaca ttaggtgttg taaacgtgta aaaccataca
    18421 tccatgattt ttgagccagc agcttgatta attttcttaa gcccttcttt agctaatgtt
    18481 tcgatatttt cgagctttgt ctgtagattg agaatcatgc gttgacaagc ccgcaagtaa
    18541 aaatgaatcc atttgtacca atcggcatga gaacctctga cactattcaa caaattgtag
    18601 tatcgtagtc tttcacgctc taattcttca ctcacaaaaa atattggcgc attcacagca
    18661 ctttcagcca tcatatttag cacaattaat attctaccga gacgtccatt accatctaga
    18721 taaggatgaa tagattcgaa ctgtgcgtgc ataattgcag ttttaatcag cgggtcagat
    18781 tgttcatcta aaagagtgta tccttccttg agcacttgat taaaactagg atgtttaaca
    18841 cgattgatgt aatgttccca gtttgtcata tagtcatcaa tttcatgagc aggaacagga
    18901 atatagactg catctttaat attgctactc ggtccaataa aattttgaat ctttctaaac
    18961 tcaccggaag agacagtagt gcctcttgtg ttacgtccca tcaatatctt atgtaattca
    19021 tgaatcaaac gtgtcgtaat tggattccca tttttgattt gcatgacacc ataatctaaa
    19081 gcatctttat aattgagcac ttccgtcact tccgtacttt tctgttcatt cggtgtttct
    19141 tcaataatat ctagaaatgt gacctgtgtt ccttcgattc ttgtagactg aactgattct
    19201 gataacgtca ataattgaat catttgtgta cttaccaatg aatgattaat ttgtgtattt
    19261 aatgcaccta ttaaactatt aatttcagca actgatttgt ataaatctaa agcattttcc
    19321 aaagtcactt ggggtggtaa gaaatctatg ccttgtaaag tcattaaaaa acacctctct
    19381 taacgcaaat tatacaacat tttgcgttaa gagaggatag caatttgtcc ttcttgatac
    19441 ctcattaaca gttaaacctt gtcatatcaa cgtttttaag tattttactc cttttttgaa
    19501 tacttacctt atacacgagc ccttgtgtta acttatctaa gaatttggag taaattacga
    19561 ttcttcataa acgataatgt cgccgggttg gcaatctaaa tatttacaga tggactctaa
    19621 agtactgaag cgcacggcct ttgcttttcc agtctttaaa atagataagt ccgcaatggt
    19681 cgcccttgtc tttcgctaac agtcctacta ccaagcctgt aacggacttt caccatcaag
    19741 atgttttcca ttccaggtgc accataaaca acccaggaaa tgtattcgac attcatttcc
    19801 cgggttatcc cattgacttg aaattaatta ttggtgtttt caacctatac gcgtatagaa
    19861 attagccatt gcacttctaa agccactttg ctaatttaat tgctacaaat tgtagtggta
    19921 atcgaatgac atgttgaatg acactgctag attcatcttt atatgacatt ctctttcttg
    19981 ctgcatagat attcgctggg aagactaacc acaaaaagcc ttggacaatt tttctcactg
    20041 cccttctatt ttttcctagt aatacataca cagcaatcat taattctaat attcctgaat
    20101 atttaacaat agcccgctta aatggtaaat aagaaggtac gatttttaaa aacatcgctt
    20161 cctttttaaa atgtgagaca ccacttagat aaaatatcat actaaacagt gcacttacga
    20221 ctagtctttt catataatcg cctctattct tctgctactt tgacaatttg ttttccaaag
    20281 ttctcgcctg taaataattt tctgaatgca gtagggactt gatcaaatcc ttcatctatc
    20341 gtaaattcag ctttgatttt cccttctgta atccattggc tgagctgttc ttgtgcttct
    20401 ttaaagtaat ctgagaattg tgcaacaaca aatccttgca tcaatgcttg gtttttgacc
    20461 aacgttcctt gaatacgtgg tcctagttct tctacatccg cattatacga ggaaatagcg
    20521 ccacatacgg gaactctcgc aaattgattc aaatgcttga atacttcgtc tgacactgcg
    20581 ccacctacat tttcaaagta tacatccaca ccgtctggga ctgctgcttc aagctgagtt
    20641 gcgaaatcac tacttttata gtcgattgcc gcatcgaaac cgagctcgtt tgttaaatat
    20701 gctgttttct tttcaccgcc agcgatacct actactctgg ctcccttgat tttagcgatt
    20761 tgccccacaa cagaacctac tgcacctgat gctgccgaaa caaccaccgt ctcattcgct
    20821 tgaggtttcc cgatttgaag tagtcctgtg taggcagtca ttcctggcat gcccagtacg
    20881 cttaaatata aatagagtgg cacatctctt acatctagtc gtgtcactga ctctccagag
    20941 actgtattaa ttcttctcca cggtaaaata cctgtaacat aatctcccac tgaaaattgt
    21001 tcatggtttg attgttgtac tttccctacg atatgtcctt ttaatggctc atctagtgca
    21061 taaggttgaa tgtagctttt cgtgtcgttc attcgacctc tcatataagg atccactgaa
    21121 atataaatag attcgatttg aatttccccc gcttcaggtg ctttcacatc aatggtttca
    21181 aaacgaaata catcatcttg tgggactcct ttggggcggg ttgcaagtac aatttgttca
    21241 ttattcatag actattcctc caaatatttt tgaatcgctt cagttaatgg gagttcaccg
    21301 ttaatgatct ggaattcgcg accttgcaat gatttatcac ttaatacaaa tacaagcact
    21361 tctgccacgt cttctctcgt aaccgtagga tgttgcaccc ctttaaattg ctcactaatt
    21421 tgaaactttt gcgtctctgg ctcatttgtt agtgcgccag ggtgaacaat agtatatttt
    21481 aaattcgttt gtcttaaata gacatctgca taatgttttg caattgtata aggttttaaa
    21541 tctcctgatg catcaaatgc ttctctacgt gagtcgtaag tagaaaccat gatgaagtgc
    21601 tgattgccaa cctgttcact cgctttaatg gccttaatag caccatctaa atcaacaatc
    21661 attgtcatat ccgcgcctgt acttcctcca gatccaacag agaagagaat ttgatcaaac
    21721 tgtttaaatt gggttgctaa ttcgtcgata gattgtttct ctacatcaat gtatactgcg
    21781 tcgatacctt tagatttcaa tgtttccact tgcgacatat ttctcacacc cgctgtaaag
    21841 tccatttgcc gcactttcaa cttacgtact aagtgttgtc ctacgccacc attcgctcca
    21901 ataattaatg atttcataaa tgttctctcc tttaacattg attattttgt taataatttc
    21961 aacacatttt ctgcaactgc atgcccagat tgcggatttt gtcctgttac aatgcgaccg
    22021 tctatcactg catatgactg ccaatcagct tcttttttga attgtgcacc aacatgcacc
    22081 aacgcatctt ctaataaata tggcatgtat ggcgttgtgc cattcgcttg ttcttcactg
    22141 tttgtaaacc ctgttaccgc cttaccttta acaatatttt ctccattttc tttaatatct
    22201 attagaccga cagcaccatg gcataccgaa gcaagaacac cattgttgtt gtaaatactc
    22261 aaagcaattt cattcaattg tggattgtct cttaaatccc agaccacccc atgaccacct
    22321 gcaaagtaaa tagcactata ttcatcaggg ttcacttctt caggagaaag cgaatgacca
    22381 aactgattca tataatttaa atcggtataa tatgcccaat cttcagctgt catcatttca
    22441 gatttgagac ttgcaggatc taatggtaca tagccgcctt taggactaac caaatctact
    22501 tcataaccag cgtcataaaa atctttcgca aaatgtgtta cctccgaaaa ccacgcacct
    22561 gtagctctct ctgtatcagg atatttcgaa atatttgtaa ct
//
LOCUS       DANHOL010000027        22548 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.027, whole genome shotgun sequence.
ACCESSION   DANHOL010000027 DANHOL010000000
VERSION     DANHOL010000027.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 22548)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22548)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22548
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.027"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(174..1238)
                     /locus_tag="PTC08_000729"
     CDS             complement(174..1238)
                     /locus_tag="PTC08_000729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017804887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-loop NTPase"
                     /protein_id="HDK5682255.1"
                     /translation="MLTVEQVKQLIGEINDPIINVPLKETEGVVEVTIKEEKAHVSVK
                     VAMAQLGGQPQLELQMAIVEKLKENGAKTVGIRFETLPEEKVKQYAGAQQQEEQTIEG
                     ALAKGNNLEFIAIASGKGGVGKSTVAVNLAVSLAREGKRVGLIDADIYGFSVPDMMGI
                     DEKPGIEGKTVIPVERHGVKVISMAFFVEENAPVIWRGPMLGKMLTNFFTEVKWGDLD
                     YLLLDLPPGTGDVALDVHTMLPSSKEIIVTTPHPTAAFVAARAGAMAKHTDHSILGVI
                     ENMSYFESKETGNKEYIFGKGGGQKLADELQSDLLGQLPLEQPSWKPVDFSPSIYQPE
                     DRLGQIYKEIAQKIIAKTNQ"
     gene            complement(1557..3005)
                     /locus_tag="PTC08_000730"
     CDS             complement(1557..3005)
                     /locus_tag="PTC08_000730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter"
                     /protein_id="HDK5682256.1"
                     /translation="MHRAVHVDKTQRNIIVAVILISAFIAILNQTLLNTALPSIMRGL
                     DIHESTSQWLVTGFMLVNGIMIPLTAYLMDRVPTRTLYLTAMGTFVVGSITAALAPSF
                     SILMTARVIQALGAGVIMPLSQFTLFTLFPKNQRGFAMGLSGLVIQFAPAIGPTLSGV
                     LVDNYSWRSPLFVVVVVSIIGLIFGWRYMRNFSDTKEVVLDKASVVLSTLGFGIMLYG
                     FSIAGARGFDDLIVLISLIVGIAIVALFIIRQIRIDNPILRLSAFRTRTFTLTSISSM
                     IVFTSMVGPALLIPIYIQNSLGLSALLSGLVVLPGAVINGVMSVVNGRLYDKVGARVL
                     VIPGFALLLITTLMMAQLTAHTSYTYVIIIFTIRLFSVSLLMMPLNTAGINSLPNDMV
                     SHGTAIMNTLRTISGSMGTALMVTLMSLGAGLYQPDGSVSKTMIQREAMAHGVDLAFY
                     VTSGFLLIGFILSFFIHDRGKKERGNQRHVVR"
     gene            complement(3111..3572)
                     /locus_tag="PTC08_000731"
     CDS             complement(3111..3572)
                     /locus_tag="PTC08_000731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SepA family multidrug efflux transporter"
                     /protein_id="HDK5682257.1"
                     /translation="MKGKFNLFNFVTLLIILSIFVISGAIFLTLLGFGLFGLSRLLIY
                     FRLGMFTYNEGFYDNLIYYGSYIILGYFVIFGVEYLMDWLQKKLYPNPYLEGFTFHLI
                     SYAMMITMFYFVIHIHYQYIQIDYWVLMLIIAFLYICKEVFYPDAENLNRK"
     gene            complement(3598..4941)
                     /locus_tag="PTC08_000732"
     CDS             complement(3598..4941)
                     /locus_tag="PTC08_000732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016426404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDK5682258.1"
                     /translation="MNLKRVSIICSLVLTMFMAAIETSIVSLALPTMRADLHATQPIS
                     LVFTVYFVGIVLSIPILSELMSRIKIIYVTMLGLILFLVGSFLSGMSSHFEMLVFARL
                     LQGVGAGVNMSLVQIVPKLAFEIPFRYKVMGIVGSVWGISSILGPFLGGFILEVSSWH
                     WLFYINIPIAVVVMVLVLTSYHFESESTSKHKVDFVGMGLFYVLLALLMASVLITGHI
                     WMNVVCLVLFIIFFGVTIKRSKKVSLSFIPTKEFGSKVRLAFFTDFFIAVTLIGFNVF
                     IPSYLQDHLGLTPLQSGLIIFPLSIGWLLINFTLEKIEANRTVRGLYLLAIGILIVGS
                     ISVLIGAFHPIVVAVTLFFLGMSFGTAYTKDSVMVQEETSPESMKKMMSLFTLTRNMG
                     NSIGSAIIGYIYAMDVVIFKTSIQNVMVFCIIVLVGLWVVWFTRKDKSLSTVSDK"
     gene            complement(5494..5691)
                     /locus_tag="PTC08_000733"
     CDS             complement(5494..5691)
                     /locus_tag="PTC08_000733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682259.1"
                     /translation="MKPHYKLFMFALMVLLLFQAYFAYYYLLGDGALTASPLLGWVSL
                     GLGILIVIIMISVHRQHKKNM"
     gene            complement(5704..6384)
                     /locus_tag="PTC08_000734"
     CDS             complement(5704..6384)
                     /locus_tag="PTC08_000734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin III family protein"
                     /protein_id="HDK5682260.1"
                     /translation="MTKSATKKKTTLETFKEMSPLSFGEEVGNSVSHGVAAFIMLLTL
                     PYAAVYSYAHHGVLMSVSVSVFVISIFLMFISSTVYHTMQQASPHKYVMRIIDHSMIY
                     VAITGTYTPVSLVLVGGWLGWSIMIILWGTTIWGILYKAIATKVNPKLSLMIYLIMGW
                     VGVIYLPIIISQSKWLFFIFILLGGLAYTIGAWFYAQKNRPYFHMIWHIFILIASLFH
                     FIGILYFM"
     gene            complement(6395..7585)
                     /locus_tag="PTC08_000735"
     CDS             complement(6395..7585)
                     /locus_tag="PTC08_000735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase"
                     /protein_id="HDK5682261.1"
                     /translation="MLESHKLEKYNQSHLTEYEKLMSTNEKERLNDKIAQLDLGEIQS
                     LYQQVYVNRQTIEDVSDVQEVNYETTAHMTDETIEFYRQLGLQAIQEGQFAVLLMAGG
                     QGTRLGYKGPKGSFEIEGVSLFELQARQLKALKEKTGHFVDWYIMTSDINDEATRAFF
                     QEHNHFDYNAEHIYFFKQDNIVALNEQGQLILDKNGSIMETPNGNGGIFKSLKKAGYL
                     DQMAERHNEYIFVNNIDNVLVKVLDPLFAGFTVHHHKDVTSKSIAPLVGEKVGRLAVR
                     SGKDTVLEYSELDPEVANQFNNANIGIHAFRRTFIENAVDKSLPYHLAIKELEQLDED
                     FGVVKKPTLKFELFYFDIFQYATSFVTLQVARDEEFSPLKNKEGQDSIETATNDLKRM
                     NIIE"
     gene            complement(7658..8164)
                     /locus_tag="PTC08_000736"
     CDS             complement(7658..8164)
                     /locus_tag="PTC08_000736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HDK5682262.1"
                     /translation="MTGKTHSAAGILIGAAVGIHFQLDIFEMATCIVVSGLASIFPDI
                     CHTRSKIGQRLPIISLIIKHLFGHRTFTHSLLFMLVVYYALHMIETPIYYMIGIICGM
                     LSHVILDMLTPRGVHLFFPIPIRIRFPIHFKTGGTIDLSLATTFSFVTLYLLFESTMK
                     QILNYFLQ"
     gene            8354..8614
                     /locus_tag="PTC08_000737"
     CDS             8354..8614
                     /locus_tag="PTC08_000737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016426399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682263.1"
                     /translation="MAMTVKKNEEEIHIQWRVADIHIPNDEILNVSEDQDIHAVPEVD
                     AKKVYRIGSTFGKTNRVIIDTNKQQYIIYTFNDKKVYNEVTK"
     gene            complement(9098..10468)
                     /locus_tag="PTC08_000738"
     CDS             complement(9098..10468)
                     /locus_tag="PTC08_000738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjiH family protein"
                     /protein_id="HDK5682264.1"
                     /translation="MEDLNQKEKNTGRLKFIVLSLIGIVLFLIPLPVIEDGKRTTTLP
                     IAFLAKQFQAILGPAIPWIILLIIIVSGILTILCSTVLKHRIPKNSFRANAFIVTWPW
                     FVIRMLAIIIVCMTFLNKGFSWVYSEDTGGLIFTGLLPTLVAVFFFAAIFLPLLLEYG
                     LLEFLGPIFRPVMRPLFTLPGRSTVDNLASFIGDGTVGVMITSKQYDEGYYTRREATV
                     IATTFSVVSLTFAIVIAETIGLIHRFALFYGTVVLACFIAALIMPRIWPLRYVEDCYS
                     DGATAEERPEKQYSYKESFRRGYEDALLTAYRAPGFKQYMVTAFKTVMDMWLVVIPVV
                     MTVGTLATILATYTPIFTWIGLPFVPLLELLQVPEAQAASETMIIGFADMFLPSILIE
                     SVENSMTQFIVGVLSVCQLIYLSEVGGVILGSKIPVGLGKLFAIFLIRTLITLPIIVL
                     VAHLFF"
     gene            complement(10589..11551)
                     /locus_tag="PTC08_000739"
     CDS             complement(10589..11551)
                     /locus_tag="PTC08_000739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron chelate uptake ABC transporter family
                     permease subunit"
                     /protein_id="HDK5682265.1"
                     /translation="MNIHFGRRYSLIIGLLIVSAILSLSAGAVWISPIAVIKEVWSGD
                     NFILSEFRVPRMLLGILVGAALAISGAVIQGVIRNPLASPDVIGITKGASLAAVIVII
                     VFPTAPLFVLPVASFIGALVISLILSLLISWQGIKGSQLALIGMAIGAVAMALVQYLL
                     IRNPMEANIALVWLTGSLFGRSMDHVLTILPWLIVAIPVIFLYARKLDILHLGEEVAT
                     ALGTHVQRTKMILLFTSVMLAGAAISVVGGLSFLGLIAPHIARSLVGHQHRHIVAMSG
                     LVGALLMVIADGLARIIAPPIDIPVGVLIAIIGAPYFLYVLRKM"
     gene            complement(11548..12573)
                     /locus_tag="PTC08_000740"
     CDS             complement(11548..12573)
                     /locus_tag="PTC08_000740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HDK5682266.1"
                     /translation="MSKLNTKLNDEHHQRRRTTLTFIVSVCFLIFAVYLNLAIGSSKI
                     SFQSMLDYFFHLKTTKATFLIHNVRMPRMIASAMIGAALAVAGVLMQAITRNPLASPQ
                     IFGVNAGASFIVVLITVFLPALADNTVVFAFVGAFIGGFTVYTLADTTKGMTPVKLAL
                     AGMTIHLFFTSLTQGIILLNEDATTTVMFWLVGALHTIKWPQIFQVLPWIIGGLIAAL
                     LLGRQLAILNLGDQLATGLGQNTKRIRALAGLLVIILAGASVSIAGPIGFVGLIVPHI
                     VKHYLNRNYFLIITLSMIMGANLLLISDVISRLIAFPFESPVGIVTSFVGALYFLWIT
                     MRGVKTR"
     gene            complement(12717..13661)
                     /locus_tag="PTC08_000741"
     CDS             complement(12717..13661)
                     /locus_tag="PTC08_000741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017722966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDK5682267.1"
                     /translation="MIIVAACGNVSDTDKSKEKSEGTKSVEIKHDGGTTKIDKEPKRV
                     VALEYSFVDALVALGVKPVGIADDGKKSNLIDPLRDKVGDYKSVGARKQPNLEVISEL
                     KPDLIIADNNRHKGNYEQLSKIAPTILLPSLDSDYKDNIEAFKTIAKALSKEDQADKR
                     LKEHEEKIDKYTKQVTMDKDKKVLPAVISQSGFLAHSDKSYVGQFLRDLGFKEALTKE
                     VADQLPEYLNAPYLNMNSEQLAEVNPERMFIMVNGENDPYYAKMKKDPVWSQIEAVKN
                     NRVHVVDRQTWAKSRGLISSEEIAKELVEISKKESNDK"
     gene            complement(13776..14852)
                     /locus_tag="PTC08_000742"
     CDS             complement(13776..14852)
                     /locus_tag="PTC08_000742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HDK5682268.1"
                     /translation="MPQIHINLSKIKYNAMVLQHMLAEQGIRMIPVTKCMGGDPKVRQ
                     QFREMGFNTLAESRLTAMMTNEQHPTEHDMMIKGALPNEIHDVVRYSQISIQTELETI
                     RALSDEAVAQGVKHHIYLMVDWKDGREGALTYEVVPLIKEIIRLKGVYLKGLSFNFMC
                     FRQIPPTEEDIVYINYFIESVERDTGVKFKTISGGNSSMLTLAMYADLGRINELRIGE
                     ALFRGYETAYNMRLPYLFDNAVTLSGRILEIKPRLNLETRQSYMQALVDIGQLDTVIA
                     GIQPVDHQLKIVGHSSDTLMMNLGLADYYQLGDKIEFHLDYSALAHSMHMQHIPRSYE
                     EDLGIEQLVRGFVDIKKNNFIKQY"
     gene            complement(14856..16619)
                     /locus_tag="PTC08_000743"
     CDS             complement(14856..16619)
                     /locus_tag="PTC08_000743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="siderophore synthetase"
                     /protein_id="HDK5682269.1"
                     /translation="MTLTHKLNADQNIQYRILIACMKEQLFPEKTQLQFKQNQVMIQY
                     HQHVLAVQYETISTLYQLELSGPIVYRVGTEDVTIETVEQLIEILGTHFGITFHDQLV
                     EELLHSRLGLELSYQQLRQRERVMRHSLKFSRMPDTLNFIAWLNHMNGDELFSVLGYT
                     EGMVWEGHPSHPLTKTKLPLNAEEIQQYAPEFMKIIPLKMVLVRKALLKSTTMTGEED
                     FVLRKMFPDKESQLRQWMQTYEGTLDDYRIILVHPWQYTNVITTRFKTMIAQHDVIPT
                     PFTVDSKATLSFRTMRLLHYPYHVKLPVNVQATSAVRTVSTVTTVDGPKLSYQLQDML
                     DIYPTLTVASEPYGAHIDVEADLARQFAMIVRHSPEVHTHDYTQLVTAVLTQVNPVDG
                     QVVVDSLIEYLYGDMNGETIQQFMRQYMEALIPPLIAYIQQYGIALEAHQQNTILQMD
                     KENETLSFIVRDLGGSRIYPETLKQTVPDFEITNDSLVSDKIEAVIAKFQHAVIQNQL
                     GTLIHHFHHKHQIDEATLYTIAAAEIEASIDPTRPHADALKRILFGEKMTVKALLNMR
                     MEQKVKQYVQIDIKNPLEREL"
     gene            complement(16603..17787)
                     /locus_tag="PTC08_000744"
     CDS             complement(16603..17787)
                     /locus_tag="PTC08_000744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDK5682270.1"
                     /translation="MAKWFFPSTFLLFLGNWIGQIALNWYAYQLNENPMDLALINFFR
                     LAPIFILSLWAGSIADRYRRSTLIKMTVTSSMVITGTLTVCVLFMNDIPMFYLYIYAC
                     LRGCMSAIETPVRQAVLPDISERLSVSKAVSYHSFLLNVCRSIGPAVAGFIIAVYDVP
                     IAFVVQTICYALALVSSLPLKLAVVKPVKNKQFSIAVAMQYFKLHLQGRRIFMTSLLI
                     MAMGYSYTTMLPILTDEVYPNSASVFGTAMTVSAIGGILATLTIPYVLQKFSTDNCYY
                     LSSILFGIALLLLYPLGEIGLFLMIFFVGLFGQFARTTNRIYFQNDVEQESRGKILSV
                     IMMDRGMIPLGAMLLSYFTELIGITTTFLVMGGATTIIAILGFLTNFKMNGGKTVHDT
                     HA"
     gene            17888..19855
                     /locus_tag="PTC08_000745"
     CDS             17888..19855
                     /locus_tag="PTC08_000745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sialic acid synthase"
                     /protein_id="HDK5682271.1"
                     /translation="MKTEQNHLSMMEKDFTKDEMENYQAVLQFDSNWATQFKRHVLVG
                     RDKITARLMASLYRENLVGSYTHSTFIQAEQLAHSAIPSGELLMIHFTYGQLTLYARV
                     ISHHAFNRVDVTGPFYWRTADGEDRRVLHPNEVLDVIINEDTRYQGAAAEQFRDDMEN
                     SAAHMALALSYQAQHPLKDAPSLLDYIEAQDDPYLTSEQLVVEGHPLHPGAKLRKGMS
                     AQETIDYSSEYQHAMLMQFILVHHDVARTMAQHGTYAEAVYHAFDGLKSVALQAIGSD
                     APLEDYMPLIVHPWQYEHIIRTEYQHELDTKAIIPLDYTKSYYAGLSFRTLMPKKPDV
                     SPHIKLSTNVHITGEIRTLSEQTTHNGPLMTNILTDISARDALFNNVSTSPVPEIAGA
                     HFYQPKDSHPDEQERRSEQLGTLFRQNIYDMIDSERLPVIPSSLVVTHPETARPLIVE
                     LVERFRQTNDTTTDIDVRAQWFKTYAASLIDYVVPLLVKYGIALEAHLQNTIAVFEPS
                     TGAFSHMLIRDFEGLRIDAEQLAQMGYDTSHFHEKSRILTKSQTSVFNKAFYSTIQNH
                     LGELVAVLSRFYHDVALENTLWSIVRQQIEQCFDKLEAADINPERLAHMQNVFFNEKI
                     DYKCVTTMRLMDEAHEYTYIKVDNPLSKSLI"
     gene            19967..21112
                     /locus_tag="PTC08_000746"
     CDS             19967..21112
                     /locus_tag="PTC08_000746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDK5682272.1"
                     /translation="MTIMRTLTFMLSIFIVGMVEMVVAGIMNLMSADLNISEAWIGQL
                     VTIYAFTFALTGPILVKLTEKYSPKSVLLSAIAFFVIGNLMIALSPNFTILIIGRIIS
                     SAAAALIVVKILSTTVVLARPENRGKMLGIVYTGFSASNVFGVPIGTLIGDWAGWRFT
                     FGLIILVGLIAGVLLTIYLPKEVKSSLQPTQNHTSRILDKGEVTKLLSITFILLTANS
                     VAYIYINPLILSGGHNIQFVSLALLIIGIAGMLGTSMGGFFTDKLSFKTWLLVSGGAF
                     VIVMLVLNQLWTASTILLIALFIWHIIQWSTNPAVQSGLIDQVEGDNSQVMSWNMSAL
                     NAGIGFGALLGGLIVSHIDLHATIYFAAGIGFIGFIIIVMLKKKRVA"
     gene            complement(21184..21675)
                     /locus_tag="PTC08_000747"
     CDS             complement(21184..21675)
                     /locus_tag="PTC08_000747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp23/Gls24 family envelope stress response
                     protein"
                     /protein_id="HDK5682273.1"
                     /translation="MTVENNKVKESYNRETGVNEKERQQREDNQGQQFSNSLTFSDEV
                     VEKIAGIAAREVRGILDMKGGFVDSISGSFSGGNNVTQGVSAEVGEKQAAIDLKVILE
                     YGESAPKIFRKVTELIKEQVKHITGLDVVEVNMQVDDVMTRKEWQQKHEKNKDQNENK
                     GLQ"
     gene            complement(21729..21974)
                     /locus_tag="PTC08_000748"
     CDS             complement(21729..21974)
                     /locus_tag="PTC08_000748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016426388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2273 domain-containing protein"
                     /protein_id="HDK5682274.1"
                     /translation="MSNENRNGQSERDSVEQFAKLLQSYKWRIIGFFFFLIIAILFLT
                     LGFWKTILIIVLCLIGIGVGYIKDRTQDFLNLLNRLS"
     gene            complement(21987..22529)
                     /gene="amaP"
                     /locus_tag="PTC08_000749"
     CDS             complement(21987..22529)
                     /gene="amaP"
                     /locus_tag="PTC08_000749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002432799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline shock response membrane anchor protein
                     AmaP"
                     /protein_id="HDK5682275.1"
                     /translation="MTRIKNFILGLLIVIIVGFLLFMYIDYQPIKEYQDYFYQFNWFQ
                     PLLIGLAGLLILIGLILFLRAFKPTYRKPGLYKDYSDGHIYISRKSIENTVYDTLSKY
                     DEVRQPNVVSKLYNKKKSSFIDITTDFIVPSESANVPSLVEQVRLDIKESVERFSELH
                     VKSVKVNVRDQKRDNGPRVV"
BASE COUNT         7170 a         4700 c         3849 g         6829 t
ORIGIN      
        1 gaatatattg tatacaggtc gacctgaaaa tgcaagtctt tttttaaact ttttacagga
       61 atttaattca agcttggaca ccctattcat ctatccactt tttaactcat gtccccccta
      121 aaatgatacc gagtaaaaag gcataacatc tccttcctac tcggcaataa tctttattga
      181 tttgttttag caatgatttt ctgagcgatc tctttataaa tctgtcctaa acgatcttct
      241 ggttggtata ttgaaggtga aaagtcgaca ggtttccatg acggttgctc taatggcaat
      301 tgaccaagta agtcactttg taattcatca gcaagctttt gaccaccgcc tttaccgaaa
      361 atgtattctt tattccctgt ttctttactt tcaaaataag acatgttctc gatgacacct
      421 aaaatggaat gatccgtatg tttcgccatt gcacctgcac gcgctgctac aaatgccgct
      481 gttggatgtg gtgttgtcac gataatttct ttacttgatg gcaacatcgt atgtacatca
      541 agtgccacat ctcctgtgcc tggcggtaaa tctaatagta agtaatctaa gtctccccat
      601 ttcacttcag taaaaaagtt cgtcaacatt ttacctaaca tcggaccacg ccaaatcaca
      661 ggcgcattct cttcaacaaa gaatgccatt gaaatcactt taacaccgtg acgttcaaca
      721 gggatgactg ttttaccttc gatacctggc ttttcatcaa tccccatcat gtccggtaca
      781 ctgaacccgt aaatatccgc atcaattaaa ccgacacgtt tcccttctcg tgctaatgag
      841 actgctaaat tgactgcgac tgttgatttc ccaacgccac ctttacctga agcaatggca
      901 ataaattcta agttattccc tttcgctagc gcaccttcaa ttgtttgttc ttcttgttgt
      961 tgcgcccctg catattgttt taccttttct tcaggaaggg tttcaaaacg aatgcctact
     1021 gttttcgcac cattttcttt tagtttttcc acaatcgcca tttgtaattc aagttgtggc
     1081 tgtcctccca attgagccat tgcaactttg acgctaacat gtgctttttc ttctttgatg
     1141 gtcacctcta caaccccttc agtttcttta agaggtacat taattattgg atcgttaatt
     1201 tctccaataa gttgtttcac ctgttcgact gttaacactt ccgacatctc cttttgtata
     1261 cgctttattc ctcattttaa caaactttta cactgttgca taaggtaaaa actccaccta
     1321 tccataaaaa ttgcgtctct cactcatcag ttcaagcttt ttacaaatac aagtgtttag
     1381 tcatccccat tgtctttatt ttagttcgct tcctcatcat aatttttgct tcattttgaa
     1441 tatgaaatct aatatgttca atgtttatta attcactcag cctccatgta tgcataaaaa
     1501 aacatcaaac aacgtcatgc tgtttgatgt ttcatctttc atcttttatc atcacattat
     1561 cgtacgacgt ggcgttgatt accacgttct tttttccctc tatcgtgaat aaagaaactg
     1621 agaataaacc cgattaataa gaagcctgaa gtaacgtaaa atgctagatc gacaccgtgt
     1681 gccattgctt cacgttgaat cattgttttt gatacagacc catctggttg ataaagtcct
     1741 gctcctaagc tcattaatgt aaccatcagc gccgtgccca tagatcctga aattgttcgt
     1801 aacgtattca tgattgctgt accatgtgac accatatcat ttggtaatga gttaattcca
     1861 gctgtgttga gcggcatcat caataacgac actgagaata aacgaatcgt aaagatgata
     1921 atcacatacg tataagatgt atgtgctgtc aattgagcca tcatcaatgt cgtaatcaag
     1981 agtaatgcaa atcctggaat gacaagtact ctcgcaccta ctttatcata taaacgaccg
     2041 ttcacgaccg acatgacacc gttaatgacc gcaccaggta atacaacaag tcctgatagt
     2101 aacgctgata gaccgagtga attttgaata taaattggaa ttaacaacgc tggaccaacc
     2161 attgacgtaa agacaatcat agatgaaatg gacgttaatg tgaatgttct tgtacgaaaa
     2221 gcagataatc tgagtatggg gttgtcaata cgtatttgac ggataataaa taaagccaca
     2281 atagcaatac caacaatcaa actgatcaat acgattaaat catcgaaccc acgcgcacct
     2341 gcaatactaa agccgtacaa cataatacca aaaccgagtg tcgagaggac aacagatgct
     2401 ttatctagaa caacttcttt tgtatcacta aagttacgca tataacgcca accgaaaatc
     2461 aagccgataa ttgaaacaac taccacaacg aataacggcg aacgccatga ataattgtca
     2521 acgagtaccc ccgacaatgt aggtccaatg gctggagcga actgaatgac aagccctgat
     2581 aatcccattg caaatccccg ttgatttttg ggaaataacg taaatagcgt aaactgactg
     2641 agcggcataa tcacacctgc ccccaacgct tgaatgacac gtgcagtcat caatattgag
     2701 aatgacggcg ctaacgcagc agtgatagaa ccgacaacaa aagtccccat cgctgttaaa
     2761 tacaacgttc ttgtaggtac tctatccatt aaatatgccg ttaatggaat cataatacca
     2821 ttcactagca taaaccctgt aactaaccat tgagaagtgc tttcatgaat gtccagacct
     2881 ctcataatac taggaagtgc agtattcaat aatgtttggt ttaaaattgc aataaaggca
     2941 ctgatcaaaa taacagcaac gatgatattt ctttgtgttt tatctacatg aacagctctg
     3001 tgcatacact ttcctcctct tacatttcta taccaatggt ttattttacg accaaaaagt
     3061 tagcttggca aagtttttga tttctcttta aaggcgcgac atgacaactc ttattttcga
     3121 tttaaattct cagcatctgg ataaaatact tctttacaaa tgtagagaaa cgcaatgatt
     3181 aacattaaca cccaatagtc gatttgaata tattgataat gaatatgaat cacaaaataa
     3241 aacattgtaa tcatcatcgc atacgaaatc aaatgaaatg tgaaaccctc gaggtaaggg
     3301 ttcggatata atttcttttg gagccagtcc atcaaatact cgacaccaaa aatcacaaag
     3361 taaccgagga taatatagct gccgtaataa attaaattgt cataaaatcc ttcattataa
     3421 gtaaacatgc caaggcgaaa atagatcagt aagcgactta agccgaataa gccaaaaccg
     3481 agtaacgtta aaaagatagc cccagaaatg acaaaaatgg agaggatgat taacaaagtg
     3541 acaaagttaa acaaattaaa cttacctttc accaatcaaa cctccccata tctttaatta
     3601 tttatcagaa actgtactta aacttttatc tttacgtgta aaccaaacta cccacaaacc
     3661 tactaatact atgatacaaa ataccataac attttggatg ctcgttttaa agataaccac
     3721 atccatcgca taaatgtatc caataattgc tgatccaatc gaattcccca tattacgagt
     3781 cagtgtaaag agtgacatca tctttttcat actttctgga gatgtttctt cttgtaccat
     3841 cacactatct ttcgtataag ccgtcccaaa gctcataccc aaaaagaaca atgtcacagc
     3901 aacaacgata ggatgaaatg caccaatcaa tacactgata cttcctacaa ttaaaatacc
     3961 tattgcgagc aaatataaac ctcgaacagt acggttcgct tcaatttttt ctaaagtgaa
     4021 gttaatcaac aaccagccga ttgacagagg gaaaatgata agtccacttt gcaacggggt
     4081 taaacctaaa tgatcttgta aataagatgg aataaagaca ttaaagccaa ttaacgttac
     4141 tgcaatgaaa aaatcagtaa aaaatgctaa gcgtacttta gagccaaatt ctttcgttgg
     4201 aataaaggac aatgacactt tttttgaacg cttgattgtg acgccaaaaa agatgataaa
     4261 taaaactaag caaacgacat tcatccaaat atgacctgtg atgagcacac tcgccatgag
     4321 taatgctagt aacacataaa ataagcccat gccgacaaaa tcaactttat gtttagacgt
     4381 tgattcactt tcaaaatgat atgaagttaa cacaagcacc atcacgacga cagcaatagg
     4441 aatattgatg taaaatagcc aatgccatga agaaacttct aaaataaagc caccgagaaa
     4501 tggtccgaga atactcgaga tgccccagac actgccgaca atccccatca ctttataacg
     4561 aaatggaatc tcaaatgcga gtttcgggac gatttgtact aatgacatgt ttaccccagc
     4621 gccgacacct tgaagtaagc gggcaaacac gagcatttca aaatgggaac tcatccctga
     4681 taaaaaacta ccgactaaaa ataaaattag tcctaacatc gtcacataga tgattttaat
     4741 ccgtgacatt aattcactta aaataggaat agataacaca attcctacaa aatacactgt
     4801 aaacacgagt gaaatgggct gtgttgcatg tagatcagca cgcatcgtcg gtaacgctaa
     4861 cgacacaatc gacgtttcga tagctgccat aaacatggtt aagactagtg agcaaataat
     4921 actaactcgc tttaaattca tacttttcta cctttccata aaatatttat tattgcagac
     4981 ataaggtttg tgaagtaaac ctatcttaac atcgcaattt aatcatcttt gccctattaa
     5041 aaagttcaac tcagctgaaa atgaaaaaat gctttcaaac gctctcatct ttcaataaag
     5101 agaccgttca catcaatctg aagcgtaaga ctcacacatt cgtccatcac agcacattgg
     5161 acgaatattt aacaccttgc ttttatgtaa agtttaaaac cgttcatttt cattatctct
     5221 acttattgtg aatttgataa gcaataaaat caaactttat gtattaaaga aagcaataga
     5281 agccattttt gtatcccatt cactttcatt ttccaactgt tttataatca ttaatgaatc
     5341 ataagtccat gaatagatta aggttaaaat ctatcgatgt cccttttctt aaaacatcat
     5401 ttactatcta taaaagacaa gagactgtta tagtgtcatc aatcctcgct acacgaacga
     5461 ttgatgtctc ggaacagtct ctttatatga tgattacatg ttctttttat gttgccggtg
     5521 tacagaaatc atgataatga caatgaggat acctaagcct aatgataccc aacctaggag
     5581 tggcgatgct gttaacgccc catctcccaa caagtaataa tatgcgaaat acgcttgaaa
     5641 cagcaataaa accattagtg caaacatgaa tagcttataa tgcggcttca tccaaacacc
     5701 cacctacata aaatataaaa tacctatgaa atgaaataat gaagcaatga gtataaatat
     5761 atgccagatc atatgaaagt atggtctgtt tttttgtgcg taaaaccatg cccctatcgt
     5821 ataagccaaa ccgcctaata aaataaaaat aaagaatagc catttggatt ggctgatgat
     5881 gataggtaag taaatcacac cgacccatcc cataatgaga taaatcatca agctcaactt
     5941 aggattcact ttcgttgcaa tggctttata taaaatcccc caaatcgtcg taccccaaag
     6001 gataatcata atggaccaac caagccaacc acctacgagt acaagtgaga caggcgtata
     6061 tgtaccagtg attgcaacat aaatcatact gtgatcaatg atgcgcatca catatttatg
     6121 aggagacgct tgttgcatcg tgtgataaac cgttgatgaa atgaacatca aaaagatgct
     6181 aatgacaaat acagacacac tgacagacat caatacgccg tgatgtgcat aactgtatac
     6241 agccgcataa ggtaaggtca ataacatgat gaatgctgcg acaccgtgcg agacgctatt
     6301 accaacttct tctccaaaag acaaagggct catttcttta aatgtttcta acgtcgtttt
     6361 tttctttgta gcacttttgg tcatattatt acctctattc aatgatgttc atacgcttca
     6421 aatcatttgt tgcagtttcg atactgtctt gaccttcttt atttttcaac ggactaaatt
     6481 cctcatctcg agcaacttgt agcgtcacaa atgaagtagc atattgaaaa atatcaaaat
     6541 aaaacagttc aaactttaat gtcggctttt tcacaacacc aaaatcttca tctaattgct
     6601 caagctcttt aatagcaaga tgataaggaa gtgatttgtc tactgcattt tcaataaatg
     6661 tgcgacgaaa cgcatgaata ccgatattgg cattgttaaa ttgattcgct acttcaggat
     6721 caagctctga atattctaac actgtgtctt taccacttcg aactgctaga cggcctacct
     6781 tctcgcctac aagtggtgca atagatttag acgtcacatc tttatggtga tgtacagtga
     6841 aaccagcgaa taatggatcc aacactttga caagaacatt atcaatatta ttcacgaaaa
     6901 tatactcatt atgacgttca gccatttgat caaggtaacc cgcctttttc aacgatttga
     6961 aaataccacc attaccattc ggtgtttcca taatgctacc gtttttatct aatatcaatt
     7021 gtccttgttc atttaacgcc acgatattgt cttgtttaaa aaagtaaata tgttcagcat
     7081 tataatcgaa atgattatgc tcttgaaaaa atgcacgtgt agcctcatca ttaatatcac
     7141 ttgtcataat gtaccaatcg acaaaatgac ctgttttttc ttttaatgcc tttaattggc
     7201 gtgcttgcaa ttcaaacaag ctcacacctt caatttcaaa tgaaccttta ggccctttat
     7261 aacctaaacg tgttccttga ccgcccgcca ttaacaatac agcgaattga ccttcttgaa
     7321 tggcttgtaa accgagttgc cgataaaatt ctatcgtttc gtccgtcata tgtgcagttg
     7381 tttcatagtt cacttcttgg acgtctgaaa catcttcaat cgtttgacgg ttcacataaa
     7441 cttgctgata gagtgattga atttctccta aatctagttg agcaattttg tcgttcagtc
     7501 gctctttctc gttcgtactc ataagctttt catattctgt taaatgtgat tgattatatt
     7561 tttcaagttt atgactttct aacataataa attgtacgct cctttaataa agctgtgact
     7621 caatttcatt aacacatcac ttcatataat ttaatcacta ttgcaaaaag taatttaaaa
     7681 tttgtttcat tgtcgactca aacaacaaat acaatgtgac aaaactaaaa gtagtcgcaa
     7741 gtgataaatc tatagtacca cctgttttaa agtgaattgg gaaacgtatg cgaattggta
     7801 tcggaaaaaa taaatgtacg cctctcggtg ttaacatatc taatatcaca tgtgaaagca
     7861 taccacaaat tataccaatc atatagtaaa ttggtgtttc aatcatatgt aatgcatagt
     7921 aaaccacgag cataaagagt aaagaatgtg taaaagtacg atggccaaac agatgtttga
     7981 taatcagact gatgataggc agccgttgtc caatcttact ccgcgtatgg catatgtcag
     8041 gaaaaatact cgctaaacca gatacaacaa tgcatgtggc catttcaaaa atatctaatt
     8101 ggaaatgtat gcccactgca gctccaataa gaatacctgc agcagagtgt gttttgccgg
     8161 tcatgttaac cacctttcta ttgatgtgtg gattatacca taaaacgtac aaaaacacga
     8221 acatattttc gtatatccca tcaatcctca aatagtatga cacatttaac tttctgtaac
     8281 tcattttatt tgaaaaagcg gtttcaatca gttacaatga atctacaaat agaaataaag
     8341 gatgtgtttt gtaatggcaa tgacagtaaa gaaaaatgaa gaagaaattc atattcaatg
     8401 gagagtagca gatattcaca ttcctaatga cgaaatccta aatgtgagtg aagatcaaga
     8461 tattcatgca gtacctgaag tagatgcaaa aaaagtttat cgtattggtt ctacatttgg
     8521 taaaacaaac cgtgtgatta tcgacacaaa caaacaacaa tacattattt atacgtttaa
     8581 tgataaaaaa gtatacaatg aagtgacgaa gtaatactta aagttatgaa atgggatggc
     8641 tcacgctgtc ccattttttt acgtgtttat atgaataagg aatcatacaa aaaggaaaca
     8701 agttgggaat taaaaacccg taacctgttt cctttttatt agcaacattt atcaataccc
     8761 aatcattcaa taaaaacgat tgcgtttggc acaaaaattt aaaacgggga tgggacataa
     8821 aaaatttttg atgctattga tgcattatgt ttgttctaat tgccctcccc ataacttgtg
     8881 gtttgagatt gacatcatgg ctttcctagg ggtgggtcct tcaactcact gacgaaaatc
     8941 caatttggct cccaccctat gtacacttta atcgaaccaa atttagttaa gacaaatccc
     9001 ttgggaacgc gaattcaaaa gggcaatcac atcaatacca atagaaaaat ttgcaaaggt
     9061 tgtgtcctcg cctgttttct tttgattgcg ctttgtttta gaaaaataaa tgtgccacta
     9121 acacaataat tggtaacgta atcaatgtac ggattaaaaa gattgcaaaa agttttccta
     9181 atccaactgg aatttttgat cctaaaataa cgccaccgac ttctgataaa taaatcaatt
     9241 gacagacact taatacaccg acaatgaatt gtgtcattga attttcgaca ctttcgatta
     9301 agatagatgg taaaaacatg tccgcaaagc cgataatcat tgtttcagag gccgcttgtg
     9361 cttctggtac ttgtaacaac tctaaaagcg gtacaaatgg taatccaatc catgtgaata
     9421 tcggtgtgta cgtcgccaaa atagttgcta atgtaccgac agtcatcacg acaggaatga
     9481 cgacaagcca catgtccatc accgttttaa aggctgtaac catgtattgt ttaaatccag
     9541 gcgcacgata tgctgtcaac agtgcatctt cataacctcg acggaatgat tctttgtaac
     9601 tgtattgctt ttctggtctt tcttcagctg ttgcaccatc tgaataacag tcttctacat
     9661 agcgcaaagg ccaaattcta ggcataatga gtgctgcgat gaaacaggct aacacgactg
     9721 tcccataaaa aagtgcgaaa cgatgaatta agccaatcgt ttctgctatt acaatcgcaa
     9781 atgttaatga aacgacactg aacgtcgtcg caatgactgt agcttctcgt cgtgtataat
     9841 acccttcatc atattgtttg ctcgtaatca tcacgccgac tgtgccatca ccgataaatg
     9901 atgcgaggtt gtctacagtt gaacgtcctg gaagtgtaaa caacggtcgc ataacaggtc
     9961 tgaaaatcgg acctaaaaac tctagtaaac cgtattcaag caataatggt aaaaagattg
    10021 ccgcaaagaa gaatactgcg actagcgttg ggagcaatcc tgtaaaaata agacctcccg
    10081 tatcttctga atatacccat gaaaatcctt tgtttaaaaa tgtcatacaa acgataatga
    10141 tcgccagcat ccgaatgaca aaccatggcc atgtcacaat aaatgcattc gctctaaagc
    10201 tattcttagg tatacgatgc tttaaaacgg tactacataa tatcgtcaaa atccctgaaa
    10261 cgataataat cagcaaaatg atccatggaa tcgctggtcc gagtatcgct tgaaattgtt
    10321 ttgctaaaaa tgcaataggt aacgttgtcg tacgtttccc atcttctatc acagggagtg
    10381 gaattaaaaa cagcacaatt ccaatgagtg aaagaacaat aaatttcaat ctccctgtat
    10441 ttttttcttt ctgattcaaa tcttccattt cctcccgcct tctcccctta gtatcagaca
    10501 gttcaacaat tgatataaat tatacaaaat ctcctatata tatgcaatat tcaatcaaac
    10561 acaaacgatt ttattgcaag tttatccgtt acatttttcg taacacataa aggaaatatg
    10621 gtgcaccaat aatcgcaatc aacacgccga ctggtatatc aataggcggt gcaatgatac
    10681 gtgccaaacc atccgcaata accattaata atgcacctac taatcctgac atcgcaacga
    10741 tatgacggtg ttggtgaccg acaagacttc ttgcaatgtg tggcgcaatg agtcctaaaa
    10801 agcttaatcc accaactaca gaaattgctg cacctgccaa catcacggat gtgaagagta
    10861 aaatcatttt cgtgcgttgt acatgcgtac ccaacgccgt cgcaacttct tctcctaaat
    10921 gtaaaatatc gagctttctc gcatataaga aaatgacagg aatcgctaca atcagccaag
    10981 gtaaaatagt caacacatgg tccatcgaac gaccgaaaag actgccggtt aaccatacaa
    11041 gtgcaatgtt ggcttccata gggttacgga tgagtaagta ttgtactaac gccatcgcaa
    11101 cagcaccaat tgccatcccg atcagcgcca gttgtgaacc tttaatcccc tgccaactaa
    11161 tcaacaggga taaaatgaga ctgatgacta atgccccaat aaatgaagca actggaagca
    11221 caaataaagg cgcagtcggg aacacaataa tgacaataac cgccgctaaa cttgcccctt
    11281 tcgtaatccc aataacatcc ggtgacgcaa gaggatttcg aatgacacct tgaatgactg
    11341 cacccgaaat cgctaatgcc gctccgacta atataccgag taacatacgg ggtactctaa
    11401 attcacttaa tataaagttg tcacctgacc atacttcttt tattaccgca atcggtgaaa
    11461 tccaaaccgc acctgcactt aaacttagga tggcgctcac aataagaagt ccgatgatta
    11521 aactatagcg tctaccaaaa tgaatattca tcgtgttttc actcctctca ttgtaatcca
    11581 taagaagtat aacgcgccga caaaggatgt tacgatgccg actggtgatt cgaatggaaa
    11641 ggcaattaaa cggctaatga cgtcagaaat caataataaa ttagccccca taatcataga
    11701 caatgtaatg attaaaaaat aattccggtt caaataatgt ttgacgatat gtggcacgat
    11761 gagaccaacg aaacctatag ggcctgcaat agacacactc gcacctgcta aaatgatgac
    11821 gagtagtcca gctaaggcac gaatgcgttt cgtattttgg ccgagacctg ttgccaactg
    11881 atcccctaga tttaaaatcg caagttgacg cccaagtaac agtgcggcga taagtccacc
    11941 gatgatccac ggtaaaactt ggaatatttg cggccattta atcgtatgca acgcgccgac
    12001 aagccaaaac atcactgttg tcgtagcatc ttcatttaac aatatgatac cttgcgttaa
    12061 gcttgtgaaa aataagtgga tcgtcatccc tgcaagtgct aattttacgg gcgtcattcc
    12121 tttagtcgta tcagcaagtg tataaacggt aaagcctccg ataaatgcac cgacaaaggc
    12181 aaacactaca gtattatcag ctaatgcagg gagaaaaaca gtaatgagga cgactataaa
    12241 cgaagcgccc gcattgacac cgaaaatttg tggggaagca agtggattgc gtgtaatcgc
    12301 ttgcattagt acccctgcaa cagccaatgc ggcgccaatc atcgcacttg caatcatcct
    12361 tggcattcgt acgttatgta ttaaaaatgt tgcttttgtt gttttcagat gaaagaaata
    12421 atctaacatc gattgaaaag aaatttttga tgaaccgatt gcaagattta aataaactgc
    12481 aaaaataaga aagcacacgc ttacaataaa cgtaagcgta gtgcgtcttc tttggtgatg
    12541 ttcatcattt aattttgtat ttaactttga cataacaaat caccttttat attcaatgac
    12601 atgagcttgg gatacttaca ttttagcccg ttcatctatc atgcacgtaa actcactaga
    12661 atcgtacatt gaacgaactc acttaatgcg ttaatttttc tatccctatc gaactcctac
    12721 ttgtcgttgc tttccttttt agaaatttca acaagttctt ttgcaatttc ttctgaagag
    12781 attaatcctc ttgattttgc ccatgtttga cgatcaacaa catgaacgcg attattttta
    12841 accgcttcga tttgactcca aactgggtct tttttcattt tagcgtaata tggatcattt
    12901 tcgccattca ccataataaa catacgctca gggttcactt cagctaattg ttctgagttc
    12961 atatttaagt atggtgcgtt taagtattca ggtaattgat ctgcaacttc tttagttaat
    13021 gcttctttga aaccaagatc acgcaaaaat tgaccaacat atgatttgtc agagtgtgct
    13081 aaaaaacctg attgagaaat tacagctggt aaaacttttt tgtctttatc cattgtaact
    13141 tgtttcgtgt acttatcaat tttttcttca tgttctttta atcgtttgtc agcttgatct
    13201 tctttagata atgctttggc gattgttttg aacgcttcga tattgtcttt gtagtcagaa
    13261 tctagacttg gtaataaaat agttggtgcg attttactta attgctcata gttcccttta
    13321 tgacggttat tatccgcaat aattaaatca ggtttaagtt cactgatgac ttctaagtta
    13381 ggttgtttac gtgcacctac tgatttgtaa tcgcccactt tatcgcgtag tggatcgata
    13441 aggtttgatt ttttaccatc atccgcgatc cccactggtt tcacacctaa tgcgactaaa
    13501 gcatccacaa atgaatattc taaagcgaca actcttttag gctctttgtc aattttagtt
    13561 gtgccaccgt cgtgcttaat ttcaacactt tttgtacctt ctgacttctc ttttgacttg
    13621 tcagtatcac ttacattgcc acaagctgca acaatgatca ttacagcaat tagggcgaca
    13681 atcccccacc atttctttgt tttcactatt ctgccactcc tttgaactat gtttttcaaa
    13741 tacattttaa taatagttga taacgattct caatgtcaat actgtttgat aaaattattc
    13801 tttttgatat cgacaaatcc ccttaccaat tgctcaatgc ccaaatcttc ttcataactt
    13861 ctcggaatat gttgcatatg catgctatgt gcgagcgcgc tataatctaa gtggaactca
    13921 atcttgtcgc caagttgata ataatctgca agtcctagat tcatcatgag tgtatcgcta
    13981 gagtgaccga caattttaag ctgatgatct acaggttgaa taccagcaat aacggtgtcg
    14041 agctgtccaa tatcgactaa agcttgcata taagattgac gtgtttcaag gtttaagcgc
    14101 ggtttaatct ctaaaatacg cccacttaat gtcactgcat tatcaaataa atacggcaag
    14161 cgcatgttat aagccgtctc atagcctcta aatagtgctt caccgattcg taattcatta
    14221 atacgtccga gatccgcata cattgctagt gtcaacatgc tcgaattccc acctgaaatc
    14281 gtcttgaatt tcacgcctgt gtctcgttca actgattcta taaaataatt gatatacaca
    14341 atatcttctt cagtcggtgg aatttgacgg aaacacatga agttaaatga cagtcccttt
    14401 aaatagaccc cttttaagcg aataatttct ttaatgagtg gcacaacttc atatgtgagt
    14461 gcaccttctc gcccgtcttt ccaatcgacc attaaataaa tatgatgttt tacgccttgt
    14521 gcaaccgctt cgtcactgag cgcgcgaatc gtctccagtt ctgtttggat gctgatttga
    14581 ctatagcgaa caacatcgtg gatttcattt ggcagtgccc ctttaatcat catatcgtgt
    14641 tcagtgggat gttgttcatt cgtcatcatc gctgttaacc gtgattcagc caaagtgtta
    14701 aaacccattt cacgaaactg ttgacgcact ttgggatcgc cacccataca cttcgtcact
    14761 ggaatcatac gtatcccttg ttctgcaagc atgtgctgta aaaccatcgc attatattta
    14821 attttactca gattaatgtg tatttgaggc ataaactaca gctctctttc taaaggattt
    14881 tttatgtcta tttgcacgta ttgttttact ttttgttcca ttctcatatt aagtaacgct
    14941 ttaacggtca tcttctcacc gaataaaata cgttttagcg catctgcatg tggacgtgtt
    15001 ggatcaatgg atgcctcgat ttctgctgct gcgatagtat acaatgtcgc ttcgtcaatt
    15061 tgatgtttat gatggaaatg atgaatcaaa gtaccgagtt gattttgaat aactgcatgc
    15121 tgaaactttg cgatgactgc ttcaatctta tcactcacta agctgtcgtt cgtaatttca
    15181 aaatcaggga ccgtttgttt taatgtttca ggataaatcc gcgaacctcc taaatcacgt
    15241 acaataaagg acagtgtctc attttcttta tccatttgca gaattgtatt ttgttgatgt
    15301 gcttctaacg cgataccgta ttgttgaata tacgcaatga gtggcggaat cagtgcttcc
    15361 atgtattgac gcataaactg ctgtatcgtt tccccattca tgtccccgta tagatactca
    15421 atcaaactat cgacgacgac ttggccatcg acaggattta cttgcgtcag aacagctgtc
    15481 acaagttgcg tatagtcatg tgtatgcact tcaggagaat gacgcacaat catcgcaaac
    15541 tgacgtgcca aatctgcttc cacatcaata tgcgcgccat acggttcact tgcaacagtc
    15601 aaggtcggat aaatgtctaa catgtcttgt aattgataac tgagtttagg accatcgacc
    15661 gtcgtcacag tcgaaacagt acgcacagca ctcgttgctt gaacgttaac aggtaatttc
    15721 acatgatatg ggtaatgcag taagcgcatc gttctaaatg ataatgtcgc tttcgaatct
    15781 actgtaaatg gggttggaat aacgtcgtgt tgcgcaatca tggttttaaa ccgcgtcgta
    15841 atcacattgg tatattgcca tggatgaacg agtataatcc gataatcatc caacgtcccc
    15901 tcatatgttt gcatccattg tcttaattga ctttctttat ctgggaacat ctttctcaat
    15961 acgaaatcct cttcaccagt cattgttgta ctttttaata acgctttacg tacgagtacc
    16021 atttttaatg gaatgatttt cataaattct ggcgcatatt gttgaatttc ttctgcattg
    16081 agtggcaatt tcgtcttcgt taacggatgt gacggatgcc cttcccaaac cataccttcc
    16141 gtgtaaccaa gtactgaaaa taattcatca ccattcatat gatttaacca tgcaataaag
    16201 ttcagcgtgt ctggcatgcg tgaaaatttt aacgaatgcc gcatcacacg ctcacgttga
    16261 cgcagctgtt gatagctcag ttcaagaccg agacgactat gtagcaactc ttcaaccaat
    16321 tgatcgtgaa acgttatgcc aaaatgcgtg cctaaaatct ctatcaattg ttctactgtt
    16381 tcaatcgtga cgtcctccgt gccaacacga taaacaatag gaccgctcaa ttcgagttgg
    16441 tataacgtac ttatcgtctc atattgaact gctaacacat gttgatgata ttgaatcatg
    16501 acttgatttt gtttgaattg aagttgtgtt ttttcaggaa ataattgttc tttcatacat
    16561 gcgatgagaa tccgatattg aatattttga tctgcattca gtttatgcgt gagtgtcatg
    16621 aactgtcttg cctccattca tcttaaaatt tgttaaaaag cctaaaattg caatgatggt
    16681 cgtcgcgcca cccataacta aaaaggtcgt cgtaatacca atcaactctg taaaataact
    16741 gagcaacatt gcgccaagtg gaatcatccc tctatccatc ataatgacgc ttaaaatttt
    16801 acctctactc tcttgttcaa catcattttg aaagtaaatg cgattcgtcg ttcgtgcaaa
    16861 ctgaccaaag agcccaacga aaaagatcat taaaaataag cctatttcgc caagggggta
    16921 taataaaagt aacgcaatac caaacagtat cgaactgaga taataacaat tgtcagttga
    16981 aaatttttgt agtacataag gaatcgtgag cgttgctaat ataccaccta ttgcactcac
    17041 tgtcatcgct gtaccaaata ccgatgcact attaggatat acctcgtctg ttaaaatcgg
    17101 taacattgtt gtataagaat aacccatcgc catgatgagc agcgacgtca taaaaattct
    17161 tctcccttgc aaatgcagtt taaaatattg catcgcgaca gctattgaaa attgcttgtt
    17221 tttaacaggt ttaacgactg ccaattttaa cggaaggctt gaaacaagtg caagtgcata
    17281 acaaatcgtt tgtacgacaa atgcaatcgg cacatcatac actgcaatga taaagcccgc
    17341 cacagcaggt ccgattgagc gacaaacatt taacaaaaag gaatgatatg aaacagcttt
    17401 agaaacagaa agtctttcgg agatgtcggg tagcacagct tgtctcaccg gtgtttcaat
    17461 ggcactcata caaccgcgca aacaggcata tatgtataaa taaaacatgg gtatgtcatt
    17521 catgaacaat acacataccg ttaaagtacc tgtaatgacc atcgaactgg tcacagtcat
    17581 tttaatcagc gttgaacgac ggtaacgatc agcaatactg cctgcccata aacttaaaat
    17641 gaaaatcggt gcaagtctaa agaagttgat gagtgcaagg tccattgggt tttcattgag
    17701 ttgataagca taccagttga gtgcaatctg accaatccaa ttccctaaaa atagtaaaaa
    17761 ggtactcgga aaaaaccatt ttgccaaaat attcaccttc tttaattgat aatgattctc
    17821 atttccgata ttatggatta tacgaatcct tttcgtattt gtaaaataaa atgaatgagg
    17881 tgtcgtcatg aaaacggaac aaaatcatct gagtatgatg gagaaagact ttacaaaaga
    17941 tgaaatggaa aattatcaag cagttctcca atttgattcg aactgggcta cacaatttaa
    18001 acgccacgtt ttagtaggtc gtgacaaaat cactgcacga ctgatggcat cactgtatcg
    18061 tgaaaacttg gttggaagtt atacccatag cacgtttata caagcagaac agttagcgca
    18121 ctctgctatt ccatccggcg aactacttat gattcacttt acatatggtc agctcacgtt
    18181 atatgcccgt gtcatcagtc atcacgcatt taaccgtgtt gatgtgacag gaccgtttta
    18241 ttggagaaca gcagatggag aggaccgtcg cgtattgcat cctaacgaag tacttgatgt
    18301 catcattaat gaagacacac gctatcaagg agcagccgca gaacagtttc gtgatgatat
    18361 ggagaatagt gccgcacata tggctctggc gctgagttac caagcacaac atccattaaa
    18421 agacgcgcca tcattacttg attatataga agcacaggat gatccttact taacttctga
    18481 gcaactcgtt gttgaagggc atccgttaca tcctggtgca aaattacgta aaggcatgtc
    18541 cgcacaagaa accattgatt actcctcaga atatcaacac gcgatgctga tgcagttcat
    18601 acttgttcat catgatgtcg cacgtacaat ggcacaacat ggcacatatg cagaagcggt
    18661 ctatcatgca tttgacgggt tgaagtcagt tgcgttacaa gcgataggtt cggatgcgcc
    18721 actcgaagat tatatgcctt tgatcgttca tccgtggcaa tatgaacata ttattcgcac
    18781 agaataccaa cacgaacttg atacaaaagc aatcatcccg ttagattata caaaatcata
    18841 ttatgcagga ttgtcttttc gcacattaat gcctaaaaag cctgacgttt caccccatat
    18901 taagctttca actaatgtgc acattactgg cgagatccgt actctgtcag aacagacgac
    18961 gcataacgga cctttaatga ccaacatttt aaccgacatt tcagcacgag atgcactttt
    19021 caacaacgtc tcaacttcac cagtaccaga aattgccggc gctcattttt atcaaccgaa
    19081 agacagtcac cctgatgaac aagaacgacg tagcgaacag ttaggcacgc tatttagaca
    19141 aaatatttat gacatgattg acagtgagcg cctgccagtt attccatcaa gtctagtcgt
    19201 cacacatcca gaaacagcgc gtccacttat cgtcgaattg gttgaacgtt ttaggcaaac
    19261 aaatgacacc acaacagaca tcgacgtacg tgcacagtgg tttaaaacat acgccgcttc
    19321 actcattgat tacgtcgtgc cactattagt gaaatacggt atcgcattag aagcacattt
    19381 acaaaacaca attgctgtat ttgagccaag tactggcgcc ttttcacata tgctcatccg
    19441 tgactttgaa ggcttacgca tcgatgcaga acagttagca caaatgggct atgatacgtc
    19501 tcatttccat gaaaaatcac gaatactgac gaagagtcaa acatctgtgt tcaacaaagc
    19561 cttttactca acgattcaaa atcatctcgg tgaactcgtc gcagtgctct cacgttttta
    19621 tcatgatgtt gcactcgaaa acacgttatg gtctatcgtt cgtcaacaaa tcgaacaatg
    19681 ttttgacaag cttgaagccg ctgacattaa tccagaacgt ttagcccaca tgcaaaacgt
    19741 attctttaat gaaaagattg attataaatg tgtgacaacg atgcggttaa tggatgaagc
    19801 acatgaatac acatatatta aagtcgacaa tccactttca aaatcattga tttaaaagta
    19861 gcacaataac atatttctac taaagattga gtcaaaagta tttcttatcc tatgtaattg
    19921 tattaaaata acttatagac aaaaattaca tttgaggaga atgactatga caatcatgcg
    19981 taccttaacg tttatgttaa gtatttttat cgtaggaatg gttgaaatgg ttgtcgctgg
    20041 cattatgaat ctgatgagcg cagatttaaa tatatcagaa gcatggatcg gtcaactcgt
    20101 gacgatttat gcttttactt ttgctttaac aggtcctatt ttagtgaaac ttaccgaaaa
    20161 atattcacct aaaagtgtgt tactatcagc gattgccttt ttcgtaatag gaaatttgat
    20221 gattgcactc tcccctaact ttacgatttt aattatcggt cgtatcattt cgtcagcagc
    20281 cgctgcattg atcgtcgtta aaatactttc cacaactgtc gtattagcgc gacctgaaaa
    20341 ccgtggtaaa atgttaggca ttgtgtatac agggtttagt gcatccaacg tattcggtgt
    20401 tccgattggt acattaattg gcgattgggc aggatggcgt tttacattcg ggctcatcat
    20461 cttagtcgga ttgattgcag gcgtactgct cacgatttat ttgccaaaag aagtaaaatc
    20521 atccctacag cctacgcaaa atcatactag ccgaatttta gacaaaggag aagtgacaaa
    20581 actcctatcg attactttta tattattaac agcaaattca gtggcttata tttacattaa
    20641 tccactcatt ttatctggcg gacataacat ccaatttgtc tctctcgccc tactcataat
    20701 cggtatcgcg ggcatgctgg ggacatccat gggggggttc tttacagata aactgtcatt
    20761 taaaacatgg ctgttagtga gtggtggggc ctttgtcatc gtcatgctcg ttttaaatca
    20821 actttggaca gcatctacta ttttactgat tgctttattc atttggcata ttattcagtg
    20881 gagtaccaat ccagcggtac aatccgggct cattgatcaa gtagaagggg ataacagtca
    20941 agtgatgagt tggaacatgt ctgcgttgaa tgcgggtatc ggttttggtg ccttacttgg
    21001 tggtttaatc gtgtcacata tcgatttaca tgcgacgatt tatttcgctg ccggtattgg
    21061 cttcatcggc tttatcatta tcgtgatgtt gaagaaaaaa cgcgtcgctt agacttgatt
    21121 aacaaagata taaaaaaggg aggtatacgc catattccag cgtatacctc ccttttttat
    21181 atcttattgt aaacctttgt tctcgttttg atctttgttt ttctcatgct tttgttgcca
    21241 ttctttacgt gtcatcacgt catccacttg catgttaact tcaaccacgt ctaaaccagt
    21301 aatgtgtttc acttgttctt taattaattc tgttacttta cggaagattt tcggcgcaga
    21361 ttcaccatat tctaaaataa ctttcaagtc gattgctgct tgtttttcgc caacttcagc
    21421 agatacacct tgtgtcacat tgttgccacc tgagaatgaa ccgctaatgc tatccacaaa
    21481 gccgcctttc atatctaaaa taccacgaac ttcacgtgct gcaatccctg caattttttc
    21541 tacaacttca tcagagaaag ttaagctatt tgaaaattgt tgtccttgat tatcttcacg
    21601 ttgttgtctt tctttttcat tcacacctgt ttctctattg taactttctt ttactttatt
    21661 attttcaact gtcatttcaa aaactccttt attatttatt ttatttttct ttttccatga
    21721 ttattgaatt aacttaaccg attaagtaaa tttaagaaat cttgtgtacg gtctttaata
    21781 taccccacac caataccgat taaacataat acgatgatta aaatcgtttt ccaaaagcca
    21841 agtgttaaaa acaagatggc aataatgagg aagaagaaaa acccaatgat acgccattta
    21901 tagctttgta atagcttcgc aaattgctct actgaatctc gctcactttg accgtttcga
    21961 ttttcattag acataggacc cctcctttac acgactcgtg gaccattgtc tcttttttgg
    22021 tcacggacat tgactttaac tgatttgaca tgcaattctg agaaacgttc aacgctctct
    22081 ttaatgtcta atcttacttg ttcaacgagt gatggaacat tcgccgattc tgatggaaca
    22141 ataaaatctg ttgtaatatc aatgaaactg ctctttttct tgttataaag ttttgatacg
    22201 acgttcggtt gacgaacctc atcatatttc gaaagcgtat cataaaccgt gttttcgata
    22261 gacttacgtg aaatataaat atggccgtct gaataatctt tataaagccc cggtttacga
    22321 tatgtgggtt tgaaagctct taagaataaa atcaaaccga taagaataag taatccagct
    22381 agaccaatta ataagggttg gaaccaatta aactgataaa agtaatcttg atactctttg
    22441 attggctgat aatcaatata cataaataac aagaaaccta cgataatgac tatcaacaag
    22501 ccaagaataa aatttttgat tcgtgtcata atcaaatgcc acctccta
//
LOCUS       DANHOL010000028        22230 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.028, whole genome shotgun sequence.
ACCESSION   DANHOL010000028 DANHOL010000000
VERSION     DANHOL010000028.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 22230)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22230)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22230
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.028"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            196..870
                     /gene="scdA"
                     /locus_tag="PTC08_000750"
     CDS             196..870
                     /gene="scdA"
                     /locus_tag="PTC08_000750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster repair di-iron protein ScdA"
                     /protein_id="HDK5682276.1"
                     /translation="MIATQDKVADIVTHYPKTADVFRKHGIDFCCGGQISLEEAVSNH
                     PKLSLTPLLQELEDASQQQGEGMQPQYLSVPSLIQYIQARYHDTLREEFKQLTPYVTK
                     LSRVHGPNHPNLVTLKSTFDAFKSAMLTHTDEEDQNAFPKLVRSANGETVEDIDAVVQ
                     SLVDDHDEAGALLQQMRELTHDFQPPAEACGTWRLVYDRIAHLERETHAHVHLENHVL
                     FPKITG"
     gene            complement(942..1475)
                     /locus_tag="PTC08_000751"
     CDS             complement(942..1475)
                     /locus_tag="PTC08_000751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682277.1"
                     /translation="MQKFHYKEYFWDVTKKIMTVFNDKDEPVYQLKLARGQQRFKLSL
                     LFNYLWQEYEIEDGENRFYLSRNKGVFGWLLPTWQVYQNEQLMGRFRASSLLPLRFYY
                     DTTEGDRFKFKFRFFTYNAEVRDESGRDVMSVAASIFKLKPEYRIEIHDGMTHPALLI
                     LLFQVGQEFISIARKSH"
     gene            complement(1480..2625)
                     /locus_tag="PTC08_000752"
     CDS             complement(1480..2625)
                     /locus_tag="PTC08_000752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerate kinase"
                     /protein_id="HDK5682278.1"
                     /translation="MHILIAPDSFKESMTAMQAAEAIEQGWRDVAGDTITFHKIPMAD
                     GGEGTTQSLHDALRGVWRTIPVQDPLGRPISATYSLANEGQTAIVEMAAASGLDLVLS
                     NERNPRMTSTYGTGQLLLDALDQGVSHIILGIGGSATNDGGAGLLQAIGVQLLDAKGQ
                     PISRGGEALAQLNRIDMSHIDERFQNVQLEIACDVDNPLLGPNGATAVYSAQKGASQA
                     DQVILEAALSHFHTVIEQDLKQQVADIPGAGAAGGLGAGLLACLPVDLKHGIDIVLSV
                     TQFDEYVQRADLVITGEGAIDGQTVYGKTPVGVAKAAKKYGKPVIAIAGKLGVGYEAV
                     EKHGIDAVYSMSTGPMSLEQAINEGPVHLKQWARHMAKFYQLMKEKR"
     gene            complement(2796..3392)
                     /gene="srtA"
                     /locus_tag="PTC08_000753"
     CDS             complement(2796..3392)
                     /gene="srtA"
                     /locus_tag="PTC08_000753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class A sortase SrtA"
                     /protein_id="HDK5682279.1"
                     /translation="MQKLTRGLVPLIGIALILAGVYLIFKPKIDAYLTNKENEQKIEV
                     YEESQQNAPSKVPEIPKDPSKVVGVLEVPSVGIKEAVYPGPATPEQLERGVSLAEKDE
                     SLKDQNIAIAGHTNYSLNYQFTELHKAKKGAEVIFKLGKETRKYQITSIKDVDPYQVE
                     VLEEMKKDKDQLTLITCDDYDEKTGQWLTRKIYVAERV"
     gene            complement(3778..5043)
                     /locus_tag="PTC08_000754"
     CDS             complement(3778..5043)
                     /locus_tag="PTC08_000754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDK5682280.1"
                     /translation="MSQKKTNVRWLFAGVFFLIGVIAYMDRSNISYIAVPMMEDLHLT
                     KAQFGFLGSFFSLGYALMQVPSGFLAEKYGPKKMITIALVWWSAFTIFTGMVKNHGLM
                     FFVRFLFGVGESPMFPSNAVFNTYWFSKHEKGRAASALLAGSYFGPVLAPIVTVTISN
                     AFGWQAVFYIFGAVGFLIAILWAIIAKDLPEHHKMVNEAEKHFIMENRDVVKTKKTTP
                     PWGAFFSRFSFYAIALQYFVVQFVITLFLYWYPTYLMEQFHVDRDTMSKIAGIPWLVM
                     FVFILSGGTISDKILSSGKSRFAARGIIAIAGFAIFGISLNFAVTSDSLVKNIVWMSL
                     CLSSIGLAMVMSWASATDLGRNYSGTVSGWMNLWGNIGAVLSPIFAGYLAEMIGWIPT
                     LRSMLILVVVAIILWFFVKPDQPLIKDEA"
     gene            complement(5284..6465)
                     /locus_tag="PTC08_000755"
     CDS             complement(5284..6465)
                     /locus_tag="PTC08_000755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDK5682281.1"
                     /translation="MQNQEHQAFIKNYIFNFLVSFFVYFAMYLLIVVIAQYAIQRYDV
                     STGVAGLITGIFIVGALIGRFVGGRYIHEVGPKRLLIIGLVLFIITQCFYFIEGSLIF
                     LFVTRFLNGMALAIATTATGTIVPLIAPVERRGVAISLFSLSLVIGAAIGPFLGLYLA
                     GIYPTFVLFTVCLIVAILAFIFALFLKVNVKMADQQSDHQGFHISQFISVPAIPIALV
                     VLICGLGYASVLSFLQLYAVEINLTAVARYYFIFYAITSVFTRPFVGRILDRFHENWV
                     AYPALVIFSVGILILAIAHSGWALLLSGALVGIGYGSMTAVGNVVAVKVSRADQVGLA
                     TSTFFIGLDVGVGFGPALLGMILPAIGYRMMYVAIGIILLLCIILYAFIHGRRQPKVM
                     Q"
     gene            6981..8936
                     /locus_tag="PTC08_000756"
     CDS             6981..8936
                     /locus_tag="PTC08_000756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002499540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-bisphosphatase class III"
                     /protein_id="HDK5682282.1"
                     /translation="MSSQTEKELKRQYLDLIAEKFDSEEKVATEIIHLESILDLPKGT
                     EHFVSDLHGEYHAFQHVLRNGSGNLQQKIHDIFKSRLDPQEMNELIALVYYPEEKIKR
                     IKNGFNTKSERHTWYEKTINRLLELVKYTSSKYTRSKLRKSLAPEYTFIIEELLYKSN
                     QFNNKKDYYDAILRQIIQLNQADKLIISLANTTQRLVVDHLHVVGDIYDRGPHPDKIM
                     DTLIDYHSVDIQWGNHDVLWMGAYSGSKVCLANLLRICARYDNLDIIEDAYGINLRPL
                     LTLAEKYYDDNEAFRPKKHPEKNPSESEILQITKIHQAIAMIQFKLEGPIIKRRPEFE
                     MNERLLLDRVDYRNRTIELNGKVHPIENTCFRTVDRRQPTALLEEEQEVMDKLLTSVQ
                     ESEKLRRHVDFLMKKGNLYLRYNGNLLIHGCIPIDEQGEMEGMTIDGRFLTGRALIDE
                     FEKHVRYAYEHKEVEDDLSTDLVWYLWTGKYSSLFGKRAMTTFERYFIKDKNTHKEVK
                     NPYYRLRENEDVVKKMLEEFDMNPEQGRIINGHTPVKERDGENPIKANGKMLVIDGGF
                     SKAYQSTTGIAGYTLLYNSFGMQLVAHQHFNSKEKLLETGEDELSIRRVVDKELERKL
                     IRDTNEGAELQKEIDMLKALMSYRYMK"
     gene            10095..11489
                     /locus_tag="PTC08_000757"
     CDS             10095..11489
                     /locus_tag="PTC08_000757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:alanine symporter family protein"
                     /protein_id="HDK5682283.1"
                     /translation="MINILEKLNAILWGAPSLILLTGTGLFLTFVLKGMQFTKLIHAF
                     KLAFVPNKKEAESEGDISNFKALMTSLAGMIGNGNIAGVATAVTLGGPGAIFWMWVVG
                     LLGMTTKYAEALLAMKFRVQNDKGEYSSGPMYYIEKGLGHRFKFLAIAFAIFGAFAAL
                     GIGNSVQSNTIADVMTNSFNVSGFITGIVLVILISLIIFGGLKRISNVAGFFVPMMAI
                     FYIGASVTILIINYDQILPAFGLIFKYAFTPVSAAGGFTGIMVMQAIQNGVSKGIFSN
                     EAGLGTVALISGNAKAGHPATQALVAMTGTFIVTIIVCTMTGLVLLVTGYWDPTGGLL
                     SGVSHDAKLEAGALTSMAFGASLGTLGEYVVSLSVIFFGFSTIIAWFVYGAKCFEYLF
                     GVKYVMLYGVIYVIATFVGTIANLKTVWLFADTANAMMMIPNLIGILFLYKIIKQETE
                     SYFKPNTQNYSKTS"
     gene            11846..12277
                     /locus_tag="PTC08_000758"
     CDS             11846..12277
                     /locus_tag="PTC08_000758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020006788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HDK5682284.1"
                     /translation="MMKQQAIEKINQVIEQSRIGVLSTAVNNKPNSRYMIFYNDDLDL
                     YTKTSRSTRKFEELTQNPDAHVLLGYEEGSGQPYVEIEGRVDIITNSKEIDWLWQEQD
                     HTFFDSKNDPDLVVLRIIPSHITLLNSDETATPFEIDVSQL"
     gene            12298..12680
                     /locus_tag="PTC08_000759"
                     /pseudo
     CDS             12298..12680
                     /locus_tag="PTC08_000759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166343.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
     gene            12829..13569
                     /locus_tag="PTC08_000760"
     CDS             12829..13569
                     /locus_tag="PTC08_000760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HDK5682285.1"
                     /translation="MYTIKVVSELTGLSTRTLRYYDQIGLLNPSNSSEAGYRLYNEKD
                     IAQLQQIMIYKNMQLPLGQIKAVLEEDTLIEDTLNRHLHYLEQQQQQIAKQIKLIEKQ
                     LGGIEMTQEEKFSQLKADALSEINAKYGEELPQKYTSTQVKAQHEHFKNLTQDVYQSA
                     ESAEATLFLLLKTIEEQALPIAHPTAEQAFLAHQNWLKHMVPNYSTDYHQQLADLYIQ
                     DSRFSAYYKQYAGEQAPYILNKLIKHYT"
     gene            complement(14102..15880)
                     /locus_tag="PTC08_000761"
     CDS             complement(14102..15880)
                     /locus_tag="PTC08_000761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDK5682286.1"
                     /translation="MKQQESNPQLTTKEQARTLYRLLRYTFPFKKLIFLTMTMLTLST
                     AASMSVPYLVKIFIDQYLTPRYFPGNDIVMLLIVFVGIQLIGAVTTYLSIYYLQYLAF
                     KVIQQLRIDAFKRISRLGMKFFDATPSGSIVSRLTNDTEAIVEMFTGVLSSFLIAFFM
                     ILASFTMMFVLDVRMAFFAILFTPLVFIVLAVYRKYASVYFYETRRRLSDLNAKLGES
                     IEGMKIIQVFNQEARLRDEFETINTSHYEYSMKTIRLDGMLLRPAITMLSTFSTVIIL
                     AYFGILSFSTTVTAGVVYAFIQYMQRFFEPVNQVSQNLNIFQQAIVSASRVFKMMDNP
                     IHAPLQNPQGHSEITEGRIVFDDVSFSYDGEHDVLKHISFTVEPGQTVALVGHTGSGK
                     SSIINLFMRFYEFNRGNIFIDGQSIKTFPHEHLKRNMGLVLQDPFMFYGTVASNIKLY
                     HPTMTETEVKAAAEFVHAHSFIEQLDGGYNHKVIEKGSAFSSGQRQLIAFARTMAINP
                     KILILDEATANIDSETEEAIQQSLNRMRAGRTTIAIAHRLSTIQDADEILVLNQGEIV
                     ERGTHDALIAKGGIYYKMYQLQLKGE"
     gene            complement(15861..17654)
                     /locus_tag="PTC08_000762"
     CDS             complement(15861..17654)
                     /locus_tag="PTC08_000762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HDK5682287.1"
                     /translation="MKVFKQLGWFLKREKWRYITALMALFVAALSSLIPPQIIGFVID
                     HITAKTLTPQNLTIYLLIIFSVGILVYGLRYFLRTRFFGASAKLGRILREQLYEKYTQ
                     MSPSFYQKYRTGDLMAHATNDIRAVQNTAGIGVMTISEAMITGGMTLLMMFVTISPKL
                     TLIAMIPLPILVISTSYYGRLLHKGFKEAQGAFSELNDKTQESIAGVKVTKSFGYETA
                     DEDDFLQLSDRVVAKNLVVSKIDALFDPTIELVIGASYLLSVVFGAYMVIDGSITIGQ
                     LITFTTYLGMLVWPLLALGFFFNIIQRGAASYDRIREIESVPSGIVTTYKNSDAPTGD
                     INFNLKQFQFEDTAHASLHDINFTIQQGMTVGIVGHTGAGKSLLIRLLLREFDTERPE
                     DIQYGHHPLRDYDIRKLRAQFGYVPQEHFLFSSTIRGNIAFSQPDIDDEAVHHASAMS
                     HIHQDILTLPLAYDTVVGERGVSLSGGQKQRISIARALLTHPQVLILDDALSAVDAET
                     ETAILGNLKKERQGKTNIITAHRMSAVMHADLIIVMRDGTIIERGTHDELLQQHGWYA
                     ETFQSQAMQSRLTQDLESEVNGGDMNETTRK"
     gene            complement(17810..19090)
                     /locus_tag="PTC08_000763"
     CDS             complement(17810..19090)
                     /locus_tag="PTC08_000763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HDK5682288.1"
                     /translation="MTTNLKERLDYEATFDCVQCGYCLPVCPTYVSFKSEKHSPRGRI
                     NLVKMAAEDKITLDDMASGIDLCLGCRACETICPTHVRYGDILSSAVEVLREERPQSP
                     VEKVIRTVAFEGVLKSKKALRLVNKGLYFYQQTGIEKAVTATKILKPLPKYAQLQKML
                     PPVRPSHPIEESGHEARPHQMKVGFFQGCMMDAFFSEVNTLAMQIMRQHDVHVTNVPQ
                     QTCCGALQHHAGETAHTIVLAKENIVAYEQYDFDYIVNTIGGCGAALKEYHLLFEKGT
                     IWRQRAEQFVAKVRDISEIMAQIELEMTHEVAYRAVYQPSCHLENVQKVFEAPENVLK
                     RVPGLTLVEMPSQQMCCGSAGIYNLVHYDASMQILDHKMSNVKLARPELIITSNPGCH
                     LQMKLGVEREGLGQRVAVKHIVEVVAEACGIRAS"
     gene            complement(19080..20501)
                     /locus_tag="PTC08_000764"
     CDS             complement(19080..20501)
                     /locus_tag="PTC08_000764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HDK5682289.1"
                     /translation="MRQQRQLEIERRLRDIVGERVFVDVAQRVSYGYDGSFGQYLPDF
                     VTQPLATSEVQQIVKLANVYDLPIYPRGAGTNLSGGSLPVNGGIVLDFSQWNDEVTIY
                     PDDLIIKTRPGVKTADIHALAEQHQLMYPPDPSSSSVCTIGGNLAENAGGPHGVKYGV
                     TKDYVIGLEVVTAQGDIIRTGGNTIKNVTGYDLTKLLIGAEGTLGIITEATLRLIPKP
                     PATQTALIVFEDLGSAGRSISQILTSGVRPSKMEILDHHAINKVVDYAGIDLPRDAAT
                     LLLVEVDGDEAILPKELETIKAALAKMGVTQVKIAGSKAEEAELWQVRKAVSPAVVER
                     GFTKISEDATVPLSKIPHMFEKVDEIKQKYDLNLVVFGHAGDGNLHPTISANMRDPEA
                     VKNVERAVEEIFNYAIELGGTLSGEHGIGTMKKPFMTREFDPASLAFQKAIKDALDPD
                     HRLNPGKIFPATGETRLVLSHDD"
     gene            20722..21150
                     /locus_tag="PTC08_000765"
     CDS             20722..21150
                     /locus_tag="PTC08_000765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-carboxytetrahydropterin synthase"
                     /protein_id="HDK5682290.1"
                     /translation="MSKFDHVQPPKHFARHHKTLIVTTRYQFTSDNRIYFSNTEHVDL
                     ENHTYTLEVELWSKTDEHGMAVDFKDIDKVYREHLEPLLDGQLINDTLPDMNTTVENI
                     AHWIWLRFNEYLPEGVSLNTISLYETPEQGIKLTRNIMAQ"
     gene            complement(21441..22169)
                     /locus_tag="PTC08_000766"
     CDS             complement(21441..22169)
                     /locus_tag="PTC08_000766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HDK5682291.1"
                     /translation="MKRKISIILCLCFLLPILTLSSANAQQPSPGTQTIVDTQKDPNG
                     KLNARYDPSYTLYCSAVLITPNMWLTAKHCAGNQEKTGYIGAVYPGQSGASTPFGMMN
                     ISLYKPDPGVDIAILKGTETDKSSAYKYYIKGFKTGIVAYDLEGLKKLIGKKIYSYGY
                     PGDKGETKQYRSEGIITNVNPITKELSTSMPSSPGQSGSGVFLENGQFLGILYGNENR
                     TTYKSAKIQPIDQRLKTWIDNNKE"
BASE COUNT         6931 a         4719 c         4009 g         6571 t
ORIGIN      
        1 gcattgcgct gacgtctctg taaaaaggtc acctgtgtaa tttcccgtta tttgtaattc
       61 taaaattttt gagctaagga gataatcatg tcaaatatat ccatttttcg aagtgaacac
      121 atccttttcc ctaatgttca ttttttcaca ttattgatat gatgaatgta ttacaagacg
      181 aaaggaagtt ttagtatgat tgctacccaa gataaagttg cggatatcgt tacacattat
      241 cctaaaacag cagacgtttt ccgcaaacac ggcatcgatt tttgctgtgg gggacagatt
      301 tctcttgaag aagctgtttc aaaccatcct aaattgtcgc tcacaccact ccttcaagaa
      361 ttagaagatg caagtcaaca acaaggtgaa gggatgcaac cacaatattt atctgtccct
      421 tctttaattc aatatattca agctcgctat catgacacat taagagaaga gttcaagcaa
      481 ttgacaccgt atgtcacaaa actctcacgc gtgcatggtc caaaccatcc gaatttagtg
      541 acattaaaat caacttttga tgcatttaaa tcagcaatgt tgacacatac agatgaagaa
      601 gaccaaaacg cttttcctaa attggtgcgt tctgccaatg gtgaaactgt tgaagatata
      661 gatgccgtcg ttcaatcgct agtcgatgat cacgatgagg cgggggcatt acttcaacag
      721 atgcgtgaac tgacgcatga tttccaaccg ccagctgaag catgcggtac ttggcgactc
      781 gtttacgacc gaattgcaca cttagaacga gaaacacatg cgcatgtcca cttagaaaac
      841 catgtgctct ttcctaaaat aacaggttga tgacgccctc gatcacatgt gaagacatca
      901 ccaacctatt tgaatatata gtcactgagg cctctatcgt ttcagtggct ttttcttgcg
      961 attgaaatga attcttgtcc tacttgaaag agtaaaatca acagcgctgg atgggtcata
     1021 ccgtcatgaa tttcaatacg gtattcaggc ttcaacttaa aaattgacgc tgcaacagac
     1081 atcacatcac gccccgattc atcgcgcact tcagcattgt atgtaaaaaa gcgaaattta
     1141 aacttaaaac ggtcgccctc cgttgtatca tagtaaaagc gtaacggcaa aagagaactc
     1201 gcacgaaaac gccccatcaa ctgctcattt tgatacactt gccaagttgg caataaccaa
     1261 ccgaagacac ctttattccg cgataaataa aaacggtttt cgccatcttc aatttcatac
     1321 tcttgccata aataattgaa tagcaatgac agcttgaacc gttgttgacc acgggccaac
     1381 ttcaattgat atacgggttc gtctttgtca ttgaataccg tcatgatttt tttcgtaaca
     1441 tcccaaaaat attctttgta atgaaatttt tgcatccgtt tacctcttct ctttcatcag
     1501 ttgataaaat tttgccatat gccgcgccca ttgttttaag tgcacaggcc cttcattgat
     1561 tgcttgttct agagacatgg gccctgttga catactgtat accgcatcaa taccatgctt
     1621 ttcaactgct tcatacccta cgcccaattt gccggcaatc gcaataacag gctttccata
     1681 ctttttcgct gctttagcga cgcccactgg tgttttaccg tacacagttt gtccatcaat
     1741 cgcaccttcc ccagtaatga caaggtctgc acgttgcaca tactcgtcaa attgcgtcac
     1801 cgagaggaca atgtcaatgc catgttttaa gtctacggga agacatgcca acaaacctgc
     1861 acctaatccc cctgcagcac ccgcacctgg aatatcggcc acttgttgct ttaaatcttg
     1921 ttcaattaca gtatgaaagt gtgacaaagc ggcttctaat atgacttggt ccgcttgact
     1981 tgcacccttt tgcgcactat aaactgcagt tgccccattc ggaccgagca acggattatc
     2041 gacatcacaa gcgatttcaa gttgcacatt ttgaaacctt tcatctatat gcgacatgtc
     2101 gatacgattt aattgcgcta aagcttcacc acctcgagaa atcggctggc cctttgcatc
     2161 taaaagttgg acccctatcg cttggagtaa cccagcacct ccatcattcg tcgcactgcc
     2221 gccaatccct aaaataatat gtgacacacc ttgatcgagc gcatccaaca acaattgtcc
     2281 cgtgccatac gtagaggtca tacgtggatt tcgttcattt gacaacacta aatctaatcc
     2341 agaagctgcc gccatttcaa cgattgcggt ctgtccttca ttcgcaaggc tgtacgtcgc
     2401 tgaaatagga cgacctaatg gatcttgaac tggaatcgtt cgccacacac ctcgtagtgc
     2461 atcgtgaagt gattgggtcg ttccttctcc cccatcagcc ataggtattt tatgaaacgt
     2521 tattgtatca cccgcaacgt cacgccaacc ttgttcaatt gcttctgcag cttgcatcgc
     2581 ggtcatagat tctttaaatg agtcaggtgc aatgagtata tgcatcagta gtcctccctt
     2641 aaccttagta cttcttatat tataggtccg gcgatgagaa ttcaaaagaa ttatgaaacc
     2701 gctctcaaca acaccattaa catgctaaat aaaaaaggta atgcctcgca catgcgatac
     2761 gacatcacct ctaagtttaa ttatccattt gacgactaca cacgttctgc tacataaatt
     2821 ttgcgtgtca gccactgacc tgttttctca tcgtaatcat cacaagtaat gagtgtcagt
     2881 tggtctttat ctttcttcat ctcttccaac acttcaactt gatacggatc gacatcttta
     2941 atcgacgtaa tttgatattt gcgcgtttct ttacccagtt taaaaattac ttctgcaccc
     3001 tttttcgctt tgtgtaactc tgtaaattga tagttcaaac tataattcgt atgtcccgca
     3061 atagcgatat tttggtcttt gagtgattca tccttttccg ccaaactgac accgcgctcc
     3121 aattgttcag gtgtcgcagg accaggatac acagcttctt ttataccgac tgacggcact
     3181 tctaatacac caacgacttt cgacgggtct ttcggaattt caggcacttt tgatggtgca
     3241 ttttgttgac tttcttcata tacttcaatt ttttgttcat tttctttatt ggtcaaatat
     3301 gcatcaattt tcggcttaaa gattaaatat acgcctgcta aaatcaatgc aataccaata
     3361 agtggaacca acccacgtgt taatttttgc atcgactgac ctctttcacg atgattttat
     3421 gcctcttatt atatcccctc aagcccaaat tgaaaataaa aaagaaaata gtggttactg
     3481 tttatcgcag taactgtctg acttctcaat gtctgcactt ttgagaagtc gagtcagcct
     3541 tgcggggggc agtacgacga aaccttggtg acacatgaga tttctgtact gctcccaaaa
     3601 tccaattcga caccggtcaa gtgtacattt caatcaagct gaattgagtt gaagattcag
     3661 tccctaggaa cgcaaaacca tgaaggcaat caaaagtaca aaacatatgg aaagggtaag
     3721 ttaaagaaaa cattgcgtca atagcatgaa aaatttcagt cccacttcct ctatttatta
     3781 cgcttcgtct ttaattaaag gttggtccgg cttaacaaag aaccataata taatcgcaac
     3841 gactactaaa ataagcatcg agcgtaatgt tggaatccaa ccgatcattt ctgcaaggta
     3901 acccgcaaag atcggactta ataccgcacc gatattgccc cataagttca tccaccctga
     3961 aacagttcct gaatagttac gtcctaaatc tgtcgctgaa gcccagctca taaccatcgc
     4021 taaaccgata ctactcaaac aaagtgacat ccaaacaata tttttcacta agctatctga
     4081 agtgaccgcg aaattaagtg aaataccaaa aatcgcaaaa cctgcaatgg caataatacc
     4141 acgtgccgca aaacgtgatt taccactgct caagatctta tctgaaatcg taccaccact
     4201 taaaatgaag acgaacatta ctaaccaagg aatacccgcg attttactca ttgtatctcg
     4261 gtcaacgtgg aattgttcca ttaagtacgt tggataccag tataaaaata atgtaataac
     4321 aaattgaact acgaaatatt gtaatgcaat cgcataaaaa ctaaagcgtg agaaaaacgc
     4381 gccccatggt ggtgttgtct ttttcgtttt aacaacgtca cggttttcca taatgaaatg
     4441 tttttctgct tcattcacca ttttatgatg ttctggtaag tctttcgcaa taattgccca
     4501 taaaatcgca attaagaaac caaccgcacc aaaaatgtag aacacagctt gccaaccaaa
     4561 tgcattagaa attgtcactg ttacaattgg tgcaagtaca ggtccaaaat aagaacccgc
     4621 taataacgca cttgccgcac gccctttttc atgcttgctg aaccaatatg tattgaatac
     4681 agcgttcgac ggaaacattg gcgattcccc tacaccgaat agaaaacgga cgaaaaacat
     4741 taatccatga tttttcacca ttcctgtaaa gattgtaaat gcactccacc atactaacgc
     4801 aatcgtaatc atctttttag gtccgtattt ctcagctaaa aatcctgatg gtacttgcat
     4861 caatgcataa cctaaagaga aaaatgaacc taaaaatcca aattgtgctt ttgtaagatg
     4921 taagtcttcc atcattggta ccgcaatata agagatatta gagcggtcca tataggcgat
     4981 gacaccaatt aagaaaaaca cacctgcaaa tagccaacgg acattcgttt tcttttgact
     5041 cataattttt gcccctcttt cattaggtca cctgatgacc tttcatgtag ctatctgaat
     5101 ataccacatc aagaaagcgg ttacaataaa attttgaaca ttttttgaac gtttttagaa
     5161 aattctttaa taatttacac tttgattaac aaaaatggct taaacctcca tcattacaag
     5221 ggattaagcc attttttaaa atactaattt attatttttt tggttattta ctatgcttcg
     5281 caactattgc atcacttttg gctgacgacg gccgtgaata aaggcatata aaatgataca
     5341 taacaataaa atgataccta tcgctacata catcatacga taaccgatag caggtaaaat
     5401 catgccgagt aacgctggac caaaaccaac gccaacatct agtccgatga aaaatgtgga
     5461 agttgcaaga ccgacttgat ctgcacgtga tactttgaca gctacaacat taccgacagc
     5521 cgtcatacta ccatagccaa taccgactaa tgcaccagac aataacaatg cccatccact
     5581 atgtgctatc gctaatatta atatacctac actaaatatc actaatgcag gataagcaac
     5641 ccaattttca tggaagcgat ccaaaatacg accgacgaat gggcgtgtga aaactgaagt
     5701 gattgcatag aagataaaat aatagcgcgc cactgcagtt aaattaattt ctacggcata
     5761 caattgtaaa aatgataaaa cagaggcgta acctaaacca caaatgagga cgacaagcgc
     5821 aatcggaatc gctggtactg aaataaattg cgaaatatga aagccttggt ggtcagattg
     5881 ttgatcagcc attttgacat tgacttttaa aaacagtgca aagatgaacg ctaaaatcgc
     5941 aacaatgaga cagactgtga ataaaacgaa tgttggataa atgcctgcta aatataaccc
     6001 taaaaacgga ccaatcgcgg cacctatcac taaacttaaa ctaaacaaac taatcgctac
     6061 acctcgccgt tcaacaggtg caatcagtgg cacaatcgtt cctgtcgcag ttgtcgcaat
     6121 cgcaagcgcc atcccattta aaaaacgagt cacaaataaa aagatgagac tcccttcaat
     6181 gaagtaaaaa cattgcgtga taatgaataa cactaatcca attatcaaca atcgtttagg
     6241 gcccacttca tgaatatagc gcccacctac gaaacggcca atcaatgcac cgacgataaa
     6301 aatacccgta atcaatcctg caacaccggt agatacgtca taacgttgaa tggcatattg
     6361 cgcgatgaca acaataagta agtacatcgc aaaataaaca aaaaaactga ctaaaaagtt
     6421 gaagatataa ttttttataa acgcttgatg ctcttgattt tgcactcaaa tactcctttc
     6481 tcatttcggt gagctaagct aactaataac tttgacatta tatcgcgcta ttatcataaa
     6541 atcaagggca tgacatacaa aatgcaaagt gtatcaataa tattcaaaaa gttgagcatc
     6601 ttcattgtag acaatctgta cataatcagg ttcgtttaac ttctataaat aatgtggttt
     6661 aatagagttg aaacggttag acacaggtca acttcatatt tgataaataa gggcaacttg
     6721 gcttgtcatg gtgattgaag acgggtgaga aagattcgta ttgtgctggc cgtactactt
     6781 tcattgaacg tgctattgaa cacaagaaca cgtgcttcct tgattaatgc acatcaagta
     6841 cgcggaacac catttcccac tgatgatctt cctctatcac acaagttcat ccattatgag
     6901 ctacttaaac aaaagcagta tcattcatgg cctgcgataa tctaaaaaac gaacaattta
     6961 tgggtaaagg agaaattcat atgtcatctc aaacagaaaa agagttaaaa aggcagtatt
     7021 tagatttaat cgctgaaaaa ttcgattcag aagaaaaagt tgcgactgaa attatccatt
     7081 tagagtcgat tttggattta cctaaaggta cagaacactt tgtgagtgac ttacacggtg
     7141 aatatcacgc atttcaacat gtgttgcgta atggatctgg taatttacaa caaaagattc
     7201 atgacatttt caaatcacga ttagaccccc aagaaatgaa tgaattgatt gcattagtct
     7261 actatccaga agaaaaaatt aagcgtatta aaaatggttt taatacaaaa agtgaacgtc
     7321 acacatggta tgaaaaaacg attaatcgct tactagaatt agtaaaatat acctcttcca
     7381 aatatacacg ttcaaaatta cgtaaatcgt tagcgccaga atatacattt atcattgaag
     7441 agttactcta taaaagtaac caattcaaca acaaaaaaga ttattatgat gcaattctga
     7501 gacaaattat ccaattgaac caagcggata aacttattat cagtcttgca aatacgacac
     7561 aaagattagt tgtagatcat ctccacgtcg ttggtgatat ttacgaccgt ggtcctcacc
     7621 cagacaaaat tatggataca ctcattgatt accattctgt cgatattcaa tgggggaacc
     7681 atgatgtttt atggatgggt gcctactctg gttcaaaggt gtgcctcgcg aacttactcc
     7741 gcatttgtgc acgttacgac aatctcgaca ttattgaaga tgcttacggt attaacttgc
     7801 gtccattatt aacgctagcc gaaaagtatt acgatgataa tgaggcattt cgtccgaaaa
     7861 aacatcctga gaaaaatcca tcagagtcag aaattttaca gattacaaaa attcatcaag
     7921 ccattgcaat gattcaattt aaattggaag gaccgattat taaacgtcgt cctgaatttg
     7981 aaatgaatga acgtttactg ctcgatcgtg tggattatcg caaccgtaca atcgaactga
     8041 acggcaaagt ccatccgatt gaaaatacat gttttagaac agtagaccgt cgccaaccta
     8101 ctgcattgct tgaagaagag caagaagtga tggataagtt gctcacatct gtacaagaat
     8161 ctgagaaatt gcgtcgtcat gtagacttct taatgaaaaa agggaacttg tacttacgtt
     8221 acaatggtaa tttactcatt cacggttgta ttcccattga cgagcaaggt gaaatggaag
     8281 gtatgacaat tgatggccgt ttcttgactg gacgtgcact gattgatgaa tttgaaaagc
     8341 acgtccgtta cgcttatgaa cataaagaag tagaagatga cctttcaacg gatttagtct
     8401 ggtatttatg gactggtaaa tattcatcat tattcggtaa acgtgcgatg acgacattcg
     8461 agcgttactt tattaaagac aagaacacgc ataaagaagt gaaaaaccca tactatcgtt
     8521 tgcgtgaaaa tgaagacgtt gtgaaaaaga tgttggaaga attcgacatg aatcccgaac
     8581 aaggtcgtat tattaacgga catacacctg tgaaagagcg cgatggtgaa aatcctatta
     8641 aagcaaacgg taaaatgctt gttattgacg gtggtttctc taaagcgtat caatcgacga
     8701 caggtatcgc gggctacacg ttgctgtata actcgtttgg tatgcagctt gtggcgcacc
     8761 aacattttaa ttcaaaagag aagttattag agacaggtga agatgagttg tctattcgtc
     8821 gtgttgtgga taaagagttg gagcgtaagt tgattcgaga tacgaatgag ggggccgagt
     8881 tgcagaagga gattgatatg ttgaaagcgt tgatgtcgta tcgttatatg aaatgacgtg
     8941 gtatttgaga aaatcacatg tagataaatg aacgattctt tatattgaaa tagctgttct
     9001 tattgattgg tacctatact cgtgttccta ggcgatgtcc ctacaactaa ccaacgcttt
     9061 gacttagctg ttacatttgt agaggtagcg gttgtggatt ttgggagcag tacagaaatc
     9121 tcatatacaa caaagatttc gacgtactgc tcccaaaatc caattcggct tctatctcat
     9181 gtatgattca atacaagccg aattgagttg aagggccagc ccctaggaac tcgaagccat
     9241 gaaggcaatc taaagccaca aatcataggg agggcaagtt taacaaaaat attgcatcaa
     9301 tagcatcaaa aatttttatg tcccatcccc agacagatac tgcgataaac agtaaccact
     9361 atttaattaa agaggcgact gtcagcagta tgcactcatt ccctcaggag tctcgccaga
     9421 tttacaattc aataaggcag cttttttaat gaatcgttca ttctttcatt tgaacgacaa
     9481 aacaaataca cctctcccct tctattacca tacaatttca ctgttatggg ttgagcgtag
     9541 gaaggaggaa tatgtctttc gaagctcttg caatttttgt tcaacatttc aatatttaaa
     9601 aacacttttc acatgcgctt cttagtttcc tttaacgcac catccacttt ctccttgttg
     9661 tgggggtgaa aaaagaaagt gcttattcca ttatgactga ctaaactttt caaaatctgt
     9721 aacacttcaa atatagaatg tcccctcatc tataatgcta gttttcatgc acgtgattca
     9781 taaattttcg agtaaaaaga attcaatatg ttgatttctc taatgtttga aaatggaaat
     9841 tcaaataaaa gtggtaatgt ttgaaagaaa ggtgtaaaat ttgagagtgc gtttttaatt
     9901 tacttgcatg caatcaacaa gatgtaatgc ggtaacatgc gacgtgttat gggaaatggc
     9961 attaccgatg ttgatatcta tttaatttaa aagagcaata attagatttt agtattattt
    10021 tacaattcaa atctatgtgt attataatga tgaaagcgtt tacttgagag atgcaaatat
    10081 tggaggggta cagtgtgatt aatatcctag aaaaattaaa tgcgatatta tggggcgcac
    10141 cgagtctcat tttattaacg ggaacggggt tgtttttaac ctttgtgttg aagggcatgc
    10201 agttcacaaa actgattcat gctttcaaac tcgcctttgt tcctaataaa aaagaagccg
    10261 aaagtgaagg tgatattagt aactttaaag cgttgatgac gtcacttgcc ggtatgattg
    10321 gtaacgggaa catcgccggt gtcgcgacag ctgtcacttt aggtggtcca ggtgcgattt
    10381 tttggatgtg ggtcgttggt ttgctcggta tgacaacgaa atatgccgag gcgttgttag
    10441 cgatgaagtt ccgcgttcaa aatgataaag gtgaatattc aagtggtccg atgtattaca
    10501 tagaaaaagg gttgggtcat cgtttcaaat ttttagcgat tgcctttgcg atattcggtg
    10561 cctttgctgc attaggtatc gggaatagtg tgcagtccaa tacgattgct gacgttatga
    10621 cgaatagctt taacgtgagt ggtttcatca ctggaattgt attagtcatt ctcatctcac
    10681 tcattatttt tggtggcctg aaacgaatta gtaacgttgc aggattcttc gttccaatga
    10741 tggcgatttt ttacattggt gcatctgtga caattctcat tattaattac gatcaaattt
    10801 taccggcatt cggtttaatt tttaaatatg cgttcacacc ggtatctgct gctggtggtt
    10861 ttactggcat tatggtcatg caagcgattc aaaatggtgt atctaaaggg atcttttcaa
    10921 acgaagctgg tttaggtacg gtcgcattga tttctggtaa tgctaaagcc ggacatccag
    10981 cgacacaagc acttgtagct atgacaggta catttatcgt gacaatcatt gtctgtacga
    11041 tgacaggtct tgttttactc gtaacaggtt attgggatcc aacaggtggt ttattgtcag
    11101 gcgtttcaca tgatgcaaaa ttagaagctg gcgcactgac aagtatggcg ttcggcgcaa
    11161 gtttgggcac tttaggcgaa tatgtcgtgt cactttcggt tattttcttc ggattttcta
    11221 ccattatcgc ttggttcgtg tacggtgcga aatgtttcga atatttattc ggtgtcaaat
    11281 atgtcatgct ttatggcgtc atttatgtca ttgctacgtt tgtaggaaca attgctaacc
    11341 ttaaaacagt gtggttgttt gcagatactg ctaatgcgat gatgatgatt ccaaacttaa
    11401 tcggtatttt attcttatat aaaatcatta agcaagagac tgaatcttat ttcaaaccga
    11461 atacacaaaa ctattctaaa acatcatgat atgccaatga tacgatctgt gtccttccaa
    11521 cagatcgtat catttttttg caatgcttta tcaacaaatt tgatgaaaag gcgatatata
    11581 gacagataaa aatgaaacaa ttgattagca gttttatcac tggtttcgta atatttataa
    11641 tgatactgat cacaggtgac actatagcat ttcctgcatt attatatgga tttgttggat
    11701 ttgttgactc ttaggcaata tttatgtcgt aaaacatcaa gaacgacaaa atcatcattc
    11761 atgtcaataa cctcatgcca tatcattctc caatgccgct ccgtttatca tcattgattc
    11821 agggtaaatt aactttgagg tgataatgat gaaacaacaa gcgattgaaa aaatcaatca
    11881 agtaatcgaa cagtcacgta ttggtgtact ctctactgct gtcaataata aaccgaatag
    11941 ccgttatatg attttttata acgatgactt agatttatat acaaaaacga gccgttctac
    12001 acgcaagttt gaagaactga cacaaaaccc agatgcccat gtattattag gttatgaaga
    12061 aggttcaggt cagccttatg tcgaaattga aggtcgagtc gatatcatta ccaactcgaa
    12121 agaaatcgat tggttgtggc aagaacaaga tcacacattt ttcgactcca aaaatgaccc
    12181 tgatttagtg gtattacgta ttattccatc acatatcaca ttattgaata gtgatgaaac
    12241 agcaacccca tttgaaattg atgtgagcca actgtaacta aaaaaggccg tatttaaatg
    12301 attcaacgct tacaagaagt catgttatac gtacaagacc aagaaaaagc caaacaattt
    12361 tggacatcgc attttgattt ctaagtcgca tctgatgata caattcaagg tatgcgtgtc
    12421 attacgttaa aaccaacaaa cacagcacaa accgccattg tcctccaaga caaaacaaaa
    12481 gttgaagcga tgggtttcgg cgtcaataca gggacacctt ccctcatatt cgggacaacc
    12541 aatatctatc gttgtatgat gacttaaaat caaaaggcat tcaagtcggc gagagaatga
    12601 ctttaccaac aggcaccgtg tttaactttg ctgatgatga aaacaactat ttcgcagtcc
    12661 gccaaactga acaatcgtaa aaaacaaaca ctattcctca acagcgtgtt ttcaatactt
    12721 agcgctatgg agaatagtgt tttttatatt taattacaaa ttgcgcttga ccttcacgtt
    12781 acgtcaagca ttacactgat attattccaa agagaaaggg ggttcaatat gtataccatt
    12841 aaggttgtat ccgaattgac aggattatct acacgcactt tacgctatta tgaccaaatc
    12901 gggcttctaa atccgagcaa ctcgagtgaa gcaggttatc gtctatacaa tgagaaagat
    12961 attgcgcaat tacaacaaat tatgatttat aaaaatatgc aattgccact tggacaaatt
    13021 aaagctgttt tagaggaaga tacgcttatt gaggacacac ttaacaggca tttgcactat
    13081 ttagaacaac aacagcagca gattgccaaa caaatcaaac tcatcgaaaa acaacttgga
    13141 gggatcgaaa tgacacaaga agaaaaattc agtcagttaa aagcagatgc actctcagaa
    13201 atcaacgcaa aatatggtga agaacttcca caaaaataca catcaacaca agttaaagcg
    13261 caacatgaac attttaaaaa tttaacacaa gacgtatacc aatcagcaga atcagccgaa
    13321 gcaacactat ttttattgtt aaaaacgatt gaggaacaag cattgcctat cgcgcatcca
    13381 actgcagaac aagcctttct tgcacatcaa aattggctca agcacatggt tcctaactat
    13441 tcgacagact atcatcagca actcgcagac ctttatattc aagactctcg gttcagtgcc
    13501 tattacaaac aatatgctgg cgaacaagcg ccttatattc taaacaaact catcaagcat
    13561 tatacgtaaa cataaaaaaa tagacgtcac tttgaccttt tccaatcgac gtctattgtt
    13621 attagccatt gtattccata caaaattatt tctaccaaat caatggcttt ttcaacactc
    13681 acctatccta caaaccacaa tatgagtcat tgatatgcat taaggtttca tttataaaat
    13741 gtctagccag acttaacgcg aaagtgattt gtacatcatt aacatgcaca catttgcttt
    13801 ttgaggttca aacacagatt gcaagaacct gtgctcgctt tcaacagaca aataaaaatg
    13861 gattgttaag ccgggcgaga ctcctgaggc atccagccga agcggaaaat ccaccaacgc
    13921 ttcaactctg tccccttcca atgaaagcgt tggttagttg tagcgaggcg cctaggaacg
    13981 cgagtccaaa gcgtgcaatc cattttaaat taaaatcaat caaaggggca taggttcagc
    14041 aatctgaagc ttgaacactt cccctcgtga atgtctcaat atgttcccta aacgatacaa
    14101 atcactcacc tttaagctgc aactgataca ttttataata aatgccgcct tttgcaatca
    14161 aagcatcatg cgtaccacgc tcgacaatct caccttgatt caacactaaa atctcatctg
    14221 catcttgaat ggtcgataat cgatgggcaa tcgcaatagt tgtccgtcca gcacgcattc
    14281 gattcaatga ctgttgaatc gcttcttcgg tctcagaatc aatattcgct gttgcttcat
    14341 ccaagattaa aattttcggg ttaattgcca tcgtacgcgc aaatgcaatc aattgacgtt
    14401 gaccacttga aaatgcactg cccttttcaa tcactttatg attatagcca ccatccaact
    14461 gctcaataaa cgaatgtgca tgtacaaatt ccgctgctgc tttcacttct gtttcagtca
    14521 ttgtcggatg atacaactta atgttagaag caactgtgcc ataaaacata aacggatctt
    14581 gtaacacgag acccatatta cgctttaaat gttcatgtgg aaaggtctta atcgactgac
    14641 catcaatgaa aatgttacct cgattaaact cataaaaacg cataaacaag ttgatgatcg
    14701 aacttttccc cgagcctgta tgaccgacca atgcaactgt ttgacccggc tcaactgtaa
    14761 acgaaatatg ctttaacaca tcatgctcac cgtcataact aaaggacacg tcatcaaaca
    14821 cgatacgtcc ttctgtgatt tcactgtgac cttgtggatt ctgtaatggg gcgtgtattg
    14881 gattatccat cattttaaat acacgactgg ccgagacaat tgcttgttga aaaatattta
    14941 agttttgact cacttggtta acgggttcaa aaaaacgctg catgtattga ataaaggcat
    15001 atacgacccc tgctgtcacc gtagtcgaaa aacttaaaat accgaaatac gccaaaatga
    15061 tcacggttga aaatgttgac aacatcgtaa tggctggacg taatagcatc ccatctaagc
    15121 gaatcgtttt catggagtat tcataatgag atgtgttaat cgtttcaaat tcgtcacgta
    15181 agcgcgcctc ttgattgaac acttgaatga ttttcatacc ttcaatggat tcaccgagtt
    15241 tcgcatttaa atctgataag cgacgtctcg tttcataaaa gtaaaccgat gcatacttac
    15301 gataaacagc gagaacgata aagactaatg gtgtaaacaa tatcgcgaaa aatgccatgc
    15361 ggacgtctaa tacgaacatc atcgtaaaac ttgccaaaat catgaaaaag gcaattaaaa
    15421 atgatgataa gacacctgtg aacatttcaa caatcgcttc tgtatcattc gtcaatcgtg
    15481 atactatact cccacttggt gtcgcatcaa aaaacttcat acctaagcga ctgatccgtt
    15541 taaatgcatc aattcttagt tgttgaatga ctttgaatgc taaatattgt aaataataaa
    15601 tacttaaata ggtcgtcaca gcgccgatca gttggatgcc gacgaacaca attaatagca
    15661 tcacgatatc attacctggg aaatatctcg gcgttaaata ttggtcgatg aagattttaa
    15721 ccaaatatgg gaccgacata ctcgcagcag tcgataatgt cagcatcgtc atcgttaaaa
    15781 agatcagctt tttaaacgga aatgtatatc ggaggagtcg atataacgtt cgtgcttgtt
    15841 ctttcgtcgt caattgggga ttactttctt gttgtttcat tcatgtcacc tccattgact
    15901 tcgctttcta aatcttgtgt taaacggctt tgcattgctt gagattggaa tgtttcagca
    15961 taccaaccgt gctgctgcag taattcatca tgtgtacccc gttcgataat cgtcccgtca
    16021 cgcataacga taatcagatc cgcatgcatg accgcactca ttcgatgggc agtaatgatg
    16081 ttggttttac cttgtcgctc ttttttcaag ttacctaaaa tggcagtttc agtttcggcg
    16141 tccacggctg acaatgcatc atctaaaatc aacacttgtg gatgggtcaa taatgcacgg
    16201 gcaatagaaa tccgctgttt ctgcccacct gataatgaga cgccacgttc accgacaact
    16261 gtgtcatagg ctagtggtaa cgttaaaata tcttggtgaa tatgactcat cgcgctggca
    16321 tgatggaccg cttcatcatc aatatcgggt tgactaaacg caatgttccc tcgaatcgtt
    16381 gaagaaaata aaaagtgttc ttgcgggacg taaccgaact gtgcccgcaa ctttcgaata
    16441 tcatagtcac gtagcggatg atggccatat tgaatatctt caggtcgctc agtatcaaat
    16501 tcacgtaata atagtcgaat aagtaaactt ttacctgctc ctgtatgacc gacaatcccc
    16561 actgtcatcc cttgttgaat cgtaaagttg atatcatgca aactagcatg tgctgtatct
    16621 tcaaactgaa attgctttaa attaaaatta atatcgccag tcggtgcgtc actatttttg
    16681 tatgtcgtta caataccact tggcacactt tcaatctctc gtatacggtc atatgacgcc
    16741 gcccctcttt gaataatgtt aaagaaaaag cctagtgcta gaagtggcca tacaagcata
    16801 cctaagtaag tagtgaatgt aatcaactgt ccaatcgtaa tcgaaccgtc aattaccata
    16861 taggcgccaa atacaacact cagtaaataa ctcgcgccaa tgaccagctc aatcgtcggg
    16921 tcaaacagtg catcgatttt cgaaacaact aagtttttcg ctacaacacg atcactcaat
    16981 tggagaaagt catcttcatc tgctgtttca tagccaaatg atttggtcac tttcacaccc
    17041 gcaatacttt cttgcgtttt atcattcaac tcactaaacg ccccttgtgc ttctttaaaa
    17101 cctttatgca acaaacgacc ataataactc gttgaaatca ctaaaatcgg cagtggaatc
    17161 atcgcgatga gcgttaactt tggactaatt gtcacaaaca tcatcaataa cgtcattcca
    17221 cctgtaatca ttgcctctga aatggtcatc acaccaatgc cggctgtgtt ttgtacagca
    17281 cgaatatcat tggtcgcatg cgccatcaaa tctcctgttc gatatttttg ataaaacgat
    17341 gggctcattt gtgtatattt ctcgtacaat tgttctctta aaatacgtcc taatttagca
    17401 ctggctccga aaaagcgggt gcgtaaaaag taacgtaatc catagacgag tatacctact
    17461 gagaaaataa tcaagaggta tatcgtcaag ttttgcggcg ttaatgtttt tgccgtaata
    17521 tggtcgatta caaaacctat aatttgcggt gggatcaaac tcgataatgc cgctacgaac
    17581 aacgccatca atgctgttat ataacgccat ttctctcgtt tcaaaaacca ccctaattgt
    17641 ttaaaaactt tcatgctgtc acctgctttc ggttgttccg agtcaatact tatccttcac
    17701 tatcacagtc ttttaaaata ccattcattt cactcatatg gcaattttgc tgtttgtaaa
    17761 aatgggatag gatatcaaaa cttttgatgc cccatatcca cttttttcgt tacgatgcac
    17821 gtatgccaca tgcttctgcg actacttcaa cgatatgttt cactgcaaca cgttgaccta
    17881 aaccttctcg ttccacgcct aacttcatct gtaaatgaca acctggatta gacgtaataa
    17941 tcaactctgg tcgtgctagt ttcacgttgc tcattttgtg atctaaaatt tgcatcgatg
    18001 catcataatg cacaaggtta taaatccctg ctgaaccaca gcacatttgt tgggatggca
    18061 tctctactag cgtaagccca ggtacacgtt tcaatacatt ttcaggcgct tcgaatactt
    18121 tttgaacatt ttctaggtgg catgacggtt gatataccgc acgatacgcc acttcatgtg
    18181 tcatttccaa ctcaatttgt gccattattt cagaaatatc gcgaactttt gcgacaaact
    18241 gttcagcacg ctgacgccaa attgtccctt tctcaaacaa caaatggtat tcttttaatg
    18301 ctgcgccaca acccccaatc gtattcacaa tataatcaaa atcatactgc tcatacgcaa
    18361 caatattctc ttttgcgagt acaattgtat gcgccgtctc ccctgcatga tgttgaagcg
    18421 caccacagca cgtttgttgc ggtacattcg tcacatggac atcgtgttgg cgcataatct
    18481 gcatcgcaag tgtattcact tcactgaaaa atgcatccat catacagcct tgaaaaaagc
    18541 ctactttcat ttgatgtgga cgtgcttcat gaccgctttc ctcaatagga tgacttggac
    18601 gcacaggtgg taacattttt tggagttgtg catatttcgg aagtggcttc aaaatttttg
    18661 tggctgtgac cgctttttcg atacctgtct gttgataaaa atagagccct ttgttcacta
    18721 gacgtaatgc tttcttactt tttaacacac cttcaaacgc cactgttcga atcactttct
    18781 cgacaggtga ttgcgggcgt tcttcgcgga gcacttcaac agctgaactt aaaatatctc
    18841 cgtagcgcac atgtgtcgga caaatcgttt cgcacgcacg gcaacctaaa cataaatcaa
    18901 tgccagatgc catatcatcc aatgtaattt tatcttctgc tgccattttc accaaattaa
    18961 tacgccctcg tggcgaatgt ttttcactct tgaatgacac atacgttggg caaaccggca
    19021 aacaataccc acattgtaca cagtcaaatg tcgcttcata gtctaaacgt tcctttaagt
    19081 tagtcgtcat ggcttaacac caaccttgtt tcacctgttg ccgggaaaat ctttccaggg
    19141 tttaggcgat gatctggatc taacgcatct ttaatcgctt tttgaaatgc caaacttgct
    19201 gggtcaaatt cacgcgtcat aaatggcttt ttcatcgtac caatgccatg ctctcccgaa
    19261 agcgttcctc ccagttcaat tgcataatta aaaatctcct caaccgcacg ttccacattt
    19321 tttaccgctt caggatcacg catattcgca ctaatcgtcg gatgcaaatt tccatctccc
    19381 gcatggccaa atacaaccaa attcaaatca tacttttgtt taatttcatc aactttctca
    19441 aacatgtgcg gaattttact cagtggtacc gtcgcatctt ccgaaatttt cgtaaaacca
    19501 cgttccacaa cggctggtga caccgcttta cgcacttgcc ataactcggc ttcttctgct
    19561 ttggacccag caattttaac ttgcgtcaca cccattttgg cgagcgcggc tttaatcgtt
    19621 tcaagttctt tcggtaatat cgcttcatca ccgtctactt caactaacag taatgtcgca
    19681 gcatctctag gcaaatcaat gcccgcatag tccacaactt tgtttatcgc atggtgatcg
    19741 agtatttcca tttttgacgg tcgtacccct gaagttaata tttgtgaaat cgaacgtcct
    19801 gctgaaccga gatcttcaaa aacaatcaat gcggtttgcg tggctggcgg tttcggaatt
    19861 agacgtaacg tcgcttcggt aataataccc agtgtgcctt ccgcgccgat gagtaatttt
    19921 gttaagtcgt aacctgtcac atttttaatc gtattgccgc ccgtccgtat gatgtcccct
    19981 tgtgctgtca cgacctctaa accaatcaca taatctttcg taacgccata tttcacgcca
    20041 tgcggcccac cggcattttc ggctaaattg cctccaatcg tacatacaga agaagaggac
    20101 ggatcaggtg gatacatgag ctgatgttgt tctgctagcg catgtatatc cgccgttttc
    20161 acgcctggtc tcgtcttaat gattaaatca tctgggtaaa tcgtcacctc atcattccat
    20221 tgtgaaaaat caagaacaat gcccccattt actggcaacg aaccgcccga caagttcgtc
    20281 ccagcgcccc tcggataaat cggtaaatca tacacattcg caagttttac aatttgttgc
    20341 acttcgctcg ttgctaacgg ttgcgtcaca aaatcaggca aatattgacc aaatgaacca
    20401 tcataaccgt aagacacccg ctgtgcaaca tcgacaaaca cacgctctcc cacaatgtcg
    20461 cgcaatcgtc gttcaatttc aagttgacgt tgttgtcgca ttgaaatccc ccctatttca
    20521 tttgcttgat gtcggaatat tttgataaag ttgtcatttc ttattctatc acacttccaa
    20581 aaatgtaaca tggggatata tttctaaata aaaataaaca gtttgataca aagtagggag
    20641 acaatcgctt aaaagcacat atgcgacatc actaaaaacg tatgttaagc tagtaaaaaa
    20701 gggcagaaaa gaggagaatt catgtcaaag tttgatcatg tgcaaccacc gaaacatttt
    20761 gcgcgccacc ataaaacatt aatcgtcacg acgcgctatc aatttacgag tgataaccgt
    20821 atttactttt caaatactga acatgtcgat ttagaaaacc atacgtatac attagaggtc
    20881 gagctatggt ctaaaacaga tgaacatggc atggcagtcg actttaaaga tattgataaa
    20941 gtgtaccgcg aacatttgga acccttatta gatggacagt tgattaatga tacattgcca
    21001 gatatgaata cgacggtcga aaatattgca cattggatat ggttacgctt taatgagtat
    21061 ttgccagaag gcgtgtcact caacaccatt tcgctatatg aaacacctga gcaaggcatt
    21121 aaattaacac gtaacattat ggcgcagtaa agtgagtgcc ggatttgaca cttgtgttaa
    21181 acaaatctaa gaagatgaat aagactggca ttgagttgga atggaaactc aaatgtcagt
    21241 cttattgtta ttacatacga tgaatttggg attagcaaac gctcattgaa cttaaatgta
    21301 atttgaacat tgcttactat aagacaaaag atgactaaac tgaggtaaag cgtttcagtt
    21361 caagtcacct ttgcctatgt gctaagagag atgtttataa agcaggaggt ctttctcttt
    21421 tttgaattac ttttatctgt ttactctttg ttattatcaa tccatgtttt taatctttga
    21481 tcgataggct gtattttagc gctcttatag gttgttctat tttcattgcc atataggata
    21541 cctaaaaact ggccattttc taaaaacaca cccgaccctg attgaccagg agaggatggc
    21601 attgaagtac ttaattcctt agtgattggg ttaacattag tgataatgcc ttcacttcta
    21661 tactgcttcg tctcaccttt atcaccagga tatccataac tatatatttt ctttccaatt
    21721 aatttcttaa gtccctctaa atcataagca acaatacctg ttttaaagcc tttaatataa
    21781 tacttataag cactactttt atctgtttcg gtccctttta aaatcgcaat atcaacaccc
    21841 gggtctggct tatataaact tatattcatc attccaaaag gtgtagacgc accggactga
    21901 cctggataca ctgcaccaat ataacctgtt ttttcttgat taccagcgca atgttttgca
    21961 gttaaccaca tgttgggtgt aatcaaaaca gcggaacaat aaagcgtata actcgggtcg
    22021 tatctagcgt ttaatttacc attagggtct ttctgcgtat ctactatcgt ttgtgttcca
    22081 gggcttggct gttgagcgtt cgcactactt aaggttagta taggcaataa aaaacataag
    22141 cagagtatga ttgaaatttt tcttttcatt tttattccac ctttacactt ttaatatctt
    22201 gtatgcactt tcaacattat acccagcatg
//
LOCUS       DANHOL010000029        22187 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.029, whole genome shotgun sequence.
ACCESSION   DANHOL010000029 DANHOL010000000
VERSION     DANHOL010000029.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 22187)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22187)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22187
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.029"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            140..1147
                     /locus_tag="PTC08_000767"
     CDS             140..1147
                     /locus_tag="PTC08_000767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002484800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HDK5682292.1"
                     /translation="MRKKFIAAVIGTTAAATALSAHADASTTYRVQPGDSLWAIATKY
                     NITIAQLKQYNGLNSNLIFPNQVLKVSGGSSTSRTTTHHSSHSITSSTVYTVRYGDTL
                     SGIAARYGTTYQNIMKWNGLNNFLILPGQKLNVSGPSTTPSRSTAKKPAPKTSSRNAS
                     YYTVQPGDSLSLIASKYGTTYQHIMELNGLTSFLIFPGQQLKVSGSAPSRQTTPTPSP
                     SYQSPTFNHQNLYDWGQCTWYVFNKRKEMGRPISTYWWNANAWDDNAARDGYTINNQP
                     AVGSILQSDLGYYGHVSYVERINADGSILVSEMNFTAAPGILTYRTVPAHRVSAFKYI
                     H"
     gene            complement(1528..1803)
                     /locus_tag="PTC08_000768"
     CDS             complement(1528..1803)
                     /locus_tag="PTC08_000768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682293.1"
                     /translation="MAKKSKKSLSVLSTALTGATLVVDFYNSYIYRSKNRKLSYISVG
                     LGLVDVVLSFYLSLGAKSKFTKAWSFFSASRQVWSGIQKIQAIRTRG"
     gene            2108..2623
                     /locus_tag="PTC08_000769"
     CDS             2108..2623
                     /locus_tag="PTC08_000769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682294.1"
                     /translation="MNQVTKIAIATTLSLGTLLGATAGASAIHADVHAATEQQTPYYT
                     YNGLFNFKGNKALEDKNFYRALQHDNFKYEGLKVGQSTFADVKKAVGNDVKKYYEEKG
                     VTYYEKNDVIFGIDSEGKLVNMTLLIEKINHSDKSVRDHVKQGEIYDTKTTHVAFYSG
                     NSIVIKAKESR"
     gene            complement(2831..5092)
                     /locus_tag="PTC08_000770"
     CDS             complement(2831..5092)
                     /locus_tag="PTC08_000770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HDK5682295.1"
                     /translation="MTAIHIHGARQNNLKNIDVSIPKHQLTVVTGRSGSGKSSLVFNT
                     IAAESERLLNETYSSYIQHQLTQYEKPDVDHIENLPVAMVINQKRLGGNSRSTVGTIS
                     DIYASVRLLWSRIGTPFVGYSDVFSFNNPNGMCEHCQGLGYVEDIDLNELLDFDKSLN
                     EGAIRFPSFKPDSWRGKRYRYSGLFDNDKKLKDYTKEELDTFLYTEPTRLKNPPSEWP
                     KTAKFEGLIHRFRRSFLINDNFEKKRFLKDVERVVTKQTCPVCHGQRLNQKVLSCKIH
                     GLNIADFTALTIEETLPFLEQIDSDKATYIIEPLKAQLQALNDIGLNYLTLARETTTL
                     SGGESQRIKLIRHLNSPLTDLVYIIDEPSVGLHPADIEKINEIMLNIRDKGNTVIIVE
                     HDPDVIKIADHVIDIGPGAGKHGGQITFEGSYAQLKQSDTDTARALTRQHHLKQSAIR
                     DNQAWLHLEHLQHNNLQDVSVAIPKNAQTVVTGVAGSGKSSLIKGGFAKHEDAILIDQ
                     KGVHTSNRSNLLTYTGIFDDIREFFSKATGLKKSMFSYNSDGACPNCNGKGVLKTELA
                     FMPDFSQVCEVCGGTRYRPEVLETKVDGYSIADVLALTVEEGLSLFQTHDAIAQTLSA
                     LQSTGLGYMTLGQSLDTLSGGEIQRLKLTRYMIEPVTEKIFIFDEPTTGLHEDDIPIL
                     QARFDQLIEEGHTVILIEHNITMMTRADWLIDVGPGAGNQGGRILYSGPPAGLKNVAE
                     SRTAPHLFGSLSE"
     gene            complement(5141..5914)
                     /locus_tag="PTC08_000771"
     CDS             complement(5141..5914)
                     /locus_tag="PTC08_000771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020220087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YibE/F family protein"
                     /protein_id="HDK5682296.1"
                     /translation="MNAIVILGLILFILMLIFGGKTGLVSFLTLFLNFIILFITVLAI
                     VFGAPIYVVTFIFCIIVSMVNLFLLNRFNTKTLAAFIASTVTTLLMIVAVYLSVHWGH
                     LQGFTQEEQDETYIFSLNIGIDMEQFMIFTVLLAVIAAVIDLAITISSPVFELHETNP
                     SLSERELFHSGMRVGREILATSANTIYLALIGGSMTIVFWFFNLHYSFGHMLNAKLFT
                     QEVITIALGGVAIAVCIPITAMITAWLVKHRHQLPFHLD"
     gene            complement(5911..7020)
                     /locus_tag="PTC08_000772"
     CDS             complement(5911..7020)
                     /locus_tag="PTC08_000772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YibE/F family protein"
                     /protein_id="HDK5682297.1"
                     /translation="MKQLSKKINTIVIVVSIIVAICAIVFTRLNSSFYHIPLGEVTKI
                     ESHHQEKSVDEQHNQDVKYKDVLQVKLLNTKQQGDTLHVEHRYNASKTEEQAYQPGDK
                     VLLHKGKNQKDTYIIEKKRDTVLVTVISAFFIALLIVGQRIGLQSILSLVINAFAILL
                     AISLYHAYPQLNLFLLMSLAVMIATILTLWLVIGWSMRTIVTIVSTLLGTFICIFIAW
                     SVIGLTHGQGIKYETMSFLTIQPRTVFLTSVMVGTLGAVMDVAITISSGMYEVLKRSP
                     HISMQRWVLAGRNIGRDIMGTMTNILLFSYLAGSLPMLLLYLKNGNTLTYSISMNWSL
                     EISRAITGGIGIALTIPLTIFLMRIWLSLRGGATR"
     gene            complement(7033..7911)
                     /locus_tag="PTC08_000773"
     CDS             complement(7033..7911)
                     /locus_tag="PTC08_000773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDK5682298.1"
                     /translation="MELKQLKYFVEVAKREHISEAALELNVAQSAISRHIHNLENELE
                     TSLFYRRGRNVFLTAEGKQLLEYAQQILEQVDLTLSQFQTQVQQQQSVFTIGYVDGSI
                     GQILPQVLQTIENELSLSLIPTLLDEQETLQALRAQEIDFALTTVTTTDPTFEIVPLV
                     EETYVLYGDLHAPMMNVPNPPLSHILKQPLYLLEPIPTDFKTYLITHADKPVRVLNQE
                     QFARFILRNQKGFVLAPTYVNLYSQNQQWKKISLSHTDFKKTLRLIYRRDLQKPLRDE
                     VIQIIMTHIQQRSVYH"
     gene            8034..12539
                     /gene="gltB"
                     /locus_tag="PTC08_000774"
     CDS             8034..12539
                     /gene="gltB"
                     /locus_tag="PTC08_000774"
                     /EC_number="1.4.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase large subunit"
                     /protein_id="HDK5682299.1"
                     /translation="MSNNYLNSKIGLYDSREEHDACGIGFYANMNNERSHEIVEKSLE
                     MLRRLDHRGGIGADGITGDGAGIMTEVPYQYFSEVTDFDLPTEGDYAVGMLFANVMIS
                     DTKHAAVMASIFEGEGLRIIGDRQVPVDVTCLAPHVAETMPVIQQVFVVNESAQDFKR
                     ALYLARKQIEKYGESAQLDLYFTSLSTRTIVYKGWLRSDQIKSLYVDLQQPSYVSKFG
                     SVHSRFSTNTFPSWERAHPNRLLMHNGEINTIQGNVNWMRARQRRLIETIFGEAQHKV
                     HQILDESGSDSAIVDNALEFLSLAMSPEQAAMLLIPEPWLYNESNDPKVRAFYEFYSY
                     LMEPWDGPTMISFCDGDKLGALTDRNGLRPGRYTITKQNEIVFSSEVGVVDVDEADVV
                     FKGQLNPGKLLLVDFNQHKVIENHELKTAIAEQQPYLEWLETYQHKLDLEAVSYAGGP
                     VAVDHVLKMQQRFGYTKEELDKYLTELVTGGKDPIGAMGYDAPLAVLSERPESLFNYF
                     KQLFAQVTNPPIDAYREKIVTSELSYLGKEGNLLEPGPDVLKRVQLKHPVLTPAQLDV
                     IGQEGFTVAEFSTGYTGGLKEALDNLGEVVIKAVRQGAEIIVLNDSDVTEVDQYAMPI
                     LLAVSHIHQLLIRENLRMQTSIVASSGETREVHHLACLVGYGANAVVPYLAQQTIAQL
                     TEHGRLDGVVADNVARYNAILSEGLIKVMAKMGISTVQSYQGAQIFEAVGLSEAVIND
                     YFTGTTSKLSGISIETLDAENKARQTIKGDTLDPGSTFQWRQQGQHHTFNPTTIRLLQ
                     HACRDNDYAQFKAFSKVANDQTSSHIRDLFAFKSQQAIDIAQVEPVEEIVKRFKTGAM
                     SYGSISQEAHQTLAEAMNQLGGKSNSGEGGEALSRYEPQADGRDFKSAIKQVASGRFG
                     VTSHYLQHAKEIQIKVAQGAKPGEGGQLPGSKVYPWIAEVRGSTPGIGLISPPPHHDI
                     YSIEDLAQLIHDLKNVNRDADITVKLVSKSGVGTIAAGVAKAFADKIVISGYDGGTGA
                     SPKTSIQHAGLPWELGLAETHQTLMMNDLRSRVRLETDGKLLTGKDVAYACMLGAEEF
                     GFATAPLVVLGCIMMRVCHKDTCPVGIATQNGDLRKLYTGKAQHVVNYMHFVAEELRE
                     IMAELGIRTVDELVGRTDLLKRSAVAYHHPKAREMKLENLLYQHDGPRTKEIEQRHGL
                     EHGFDLTTLLPVSQAHIQAGSRFKGQFEVGNEQRNIGVITGSEITRAHGLNGLPTDTI
                     VVETHGHAGQSLGAWIPQGLTLHHTGDANDYVGKGLSGGKIVVNAPNVAREAEIIVGN
                     VCFYGATKGEAYINGRAGERFCIRNSGVHVVVEGVGDHGLEYMTGGRVVILGDVGKNF
                     GQGMSGGVCYAFPSDVEQFKTHNQLATLDFDVVKDEAEKAMLKGMLERHLAYTESQKA
                     AVILADFEAQLQQCVKVIPKDYKQMVQKIHYHQQQHASQDDALLAAFNDDQNIDEVAQ
                     AEPIAVY"
     gene            12552..14009
                     /locus_tag="PTC08_000775"
     CDS             12552..14009
                     /locus_tag="PTC08_000775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase subunit beta"
                     /protein_id="HDK5682300.1"
                     /translation="MGEFKGFMKYDKQKLAEMPLETRIQHYEAYQSRFSQEDAQQQGA
                     RCMDCGTPFCQVGEMVERETVGCPLGNYIPEWNDLVYRGDFKTAYERLAETNNFPDFT
                     GYVCPAPCEASCVMKINRESVAIKGIERTIIDEAFEQGWVKPKTPSVRRNEKVAIIGS
                     GPAGLAAAEELNALGYQVVVYEKNAQPGGLLAYGIPNMKLDKEVVFRRIRLLEEAGIT
                     FHCNVEIGKDVSKNELDETYDAVVVCTGAEKPRDLPLEGRMGRGIHFAMDYLTEQTQL
                     LLNETDTQTISAQGKKVVVIGDGDTGADCVATALRDGCESIIQFNRKARKPERFEFNY
                     SWPLAQPVLKKDYAHQEYEAKYGQEPRAYGIQTMRFDVDELGDVRGIYAQVQRDHADG
                     TIVGDDREIFIPADLVLLAIGFEGVKSPLAHALQLKVERQKIVADTKDYRTNQSKYFV
                     AGDARRGQSLVVWAIKEGREVAQSVHRYIARKVFI"
     gene            14076..14168
                     /locus_tag="PTC08_000776"
     tRNA            14076..14168
                     /locus_tag="PTC08_000776"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:14112..14114,aa:Ser,seq:tga)
     gene            14488..15924
                     /gene="treP"
                     /locus_tag="PTC08_000777"
     CDS             14488..15924
                     /gene="treP"
                     /locus_tag="PTC08_000777"
                     /EC_number="2.7.1.201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system trehalose-specific EIIBC component"
                     /protein_id="HDK5682301.1"
                     /translation="MAVKKKDVRDIIEAIGGEENIQSATHCVTRLRLVLKDDNQVDKE
                     KLSENPLVKGQFKADQQYQIVIGPGTVDEAYKVLMEETNTQAVSKEEAKAQAAKKGNP
                     LQRLIKLLGDIFIPILPAIVTAGLLLGVNNVLTMKGLGNAPSIIERFPQIADFANIIN
                     VIATTAFIFLPALVGWSAMRVFGGNPVLGIVLGLVLMHPQLLSQYDIGKVDEIPAWHI
                     FGLKIEQLNYQGQVLPVLLAAYVLAQIEKGLNKVVHDSIKLLVVGPVALLVTGFLAFL
                     FIGPLALWMGTGITSAVQFLFGNAGWFGGAVYGLLYAPLVITGLHHMFLAVDFQLMGS
                     ELGGTYLWPILALSNIAQGSAAFGAWFVYQRRQMNKEQGLAMTSGISGFLGVTEPAMF
                     GVNLPLKYPFFAAILTTMVTGAIVGGSGVLGSVGVGGLPAIISIKSQFWGVFGIATLI
                     SMVVPAVLTIIFAKLSREKTKIMVNDEQ"
     gene            15969..17600
                     /gene="treC"
                     /locus_tag="PTC08_000778"
     CDS             15969..17600
                     /gene="treC"
                     /locus_tag="PTC08_000778"
                     /EC_number="3.2.1.93"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020220085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha,alpha-phosphotrehalase"
                     /protein_id="HDK5682302.1"
                     /translation="MVRQDWKKSVVYQIYPKSFNDTTGNGEGDLKGIIEKLDYLQFLG
                     VDYLWLTPIYDSPMNDNGYDIRDYYQVNAQFGDKDDLRTLIDEAHARGLKMMLDIVIN
                     HTSTEHEWFQQAQQSVDNPYRDYYFFRRSEDGPPTNWLSKFGGNAWQYDEQTDAYYLH
                     LFDVTQADLNWDNPEVRHALYEMINYWIDFGVDGFRFDVINLISKDTFEDSNEIGKEY
                     YTDGPRVHDYIHEMNRHTFGDRDMMTVGEMSSTSIDHCIQYTNPERQELSSVFNFHHL
                     KVDYRDGQKWTNQKFDLLQLKQILMEWQTKMYAGNGWNAIFWCNHDQPRVVSRFGSDA
                     TEALRQQSAKTLAIALHLLQGTPYIYQGEEIGMTDPHFQSIQQYRDVESLNAYREMRE
                     AGIDEAEILTILGQKSRDNSRTPMQWNDEAHAGFTTGTPWIEVANNYNTVNVEAAMAD
                     PESILYTYKKLIQLRHEHDIVTYGEVVPRYLDHPQLFVYERRYQGDTWLIIVNMTSEK
                     VTLPEDLDRSGSVVLQNGIIEGNELEAYATIVVAR"
     gene            17622..18356
                     /gene="treR"
                     /locus_tag="PTC08_000779"
     CDS             17622..18356
                     /gene="treR"
                     /locus_tag="PTC08_000779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trehalose operon repressor"
                     /protein_id="HDK5682303.1"
                     /translation="MKNQNKFQYIYERLRIAILEGEYEYGEQLLSEHQLVKKYNVSRE
                     TVRKSLNMLVLDGMIQKIRGKGSVVIYQGVTEFPFADLKSFKEVQTQLGLHYETVVVR
                     FEKIKAADVPQVKKALEMTTDEELWHFIRYRQIEGITKIVDEDYVRANLFPELSEAVV
                     QNSLYDYIEKVKGYEISFSSKSITFEPFGELERAAFGDVTPQYSATVRGIVHLKDTTK
                     FQYNVSKHIATEFKFIDFSRRHSHLS"
     gene            18442..18711
                     /gene="ffs"
                     /locus_tag="PTC08_000780"
     ncRNA           18442..18711
                     /ncRNA_class="SRP_RNA"
                     /gene="ffs"
                     /locus_tag="PTC08_000780"
                     /product="signal recognition particle sRNA large type"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF01854"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF01854"
     gene            18813..19346
                     /locus_tag="PTC08_000781"
     CDS             18813..19346
                     /locus_tag="PTC08_000781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HDK5682304.1"
                     /translation="MSIFLSTPTENDYEATYEMLANAFEDVPESDHQEHHLVKRLRLS
                     PNYRYELEVVAKTDEGDIIGHGMCSEVTIQNDDTTYTALALAPLAVVAEYRNKGIGRA
                     LVQALEERAFAENYTTIVVLGHADYYQKLGYEEAIRHHILAPFDVPSENYRVKFLWDT
                     LEDPPNGKVIYPEAFFE"
     gene            19413..21116
                     /gene="dnaX"
                     /locus_tag="PTC08_000782"
     CDS             19413..21116
                     /gene="dnaX"
                     /locus_tag="PTC08_000782"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HDK5682305.1"
                     /translation="MDYQALYRMFRPQSFEDVVGQEHVTKTLKNAIAKGKQSHAYIFS
                     GPRGTGKTSIAKIFAKAINCEVRDDGEPCNECASCKGITQGYNSDVIEIDAASNNGVD
                     EIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPH
                     KIPPTIISRAQRFDFKAINANRIVDRLRYVAHQQQIEFDEAALTFIAKVSEGGMRDAL
                     SIMDQAIAFGDERLTLKDALDVTGSLDESDLNALFQDVVQGHVHEAFERYHQFVSEGK
                     EVNRLINDMIYFVRDTIMAKTTQLETEYDALMPFNLEVLYKMIDVINDTLVSIRFSVN
                     QNVHLEVLLVKLSEMVKEVNRTGEVVVNHAPTEQHDAMMRRMEALESELQTLKSQGFS
                     TATAPPKPPAAAKRRGSGSTYSIEQIAKVLDKANKEDIALIKERWADVIQYAKDRNQK
                     SLVSLLQNSEPVAASEDKVLIKFDEEIHCEILKKDEEKKRSIENVVKDMINKSVEVVG
                     VPADKWMQVRSDYISNRKRGNTQSNASEAKKPAEQQNDVVQTAKDLFGEEMVHLMDEE
                     T"
     gene            21208..21528
                     /locus_tag="PTC08_000783"
     CDS             21208..21528
                     /locus_tag="PTC08_000783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009383384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaB/EbfC family nucleoid-associated protein"
                     /protein_id="HDK5682306.1"
                     /translation="MRGGGNMQQMMKQMQKMQKKMAEEQEKLKEEHVEGTAGGGMVKV
                     VVSGHKEVVDVIINEEVVDPEDVEMLQDLVLAATNEAMNKADALTAERLGKHTKGLNI
                     PGMM"
     gene            21530..22126
                     /gene="recR"
                     /locus_tag="PTC08_000784"
     CDS             21530..22126
                     /gene="recR"
                     /locus_tag="PTC08_000784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009383386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein RecR"
                     /protein_id="HDK5682307.1"
                     /translation="MHYPQPISKLIDSFMKLPGIGPKTAQRLAFHVLDMKEDDVVQFA
                     KALVDVKRELTYCSVCGHITEQDPCYICEDKQRDRSMICVVEDDKDVIAMEKMKEYKG
                     LYHVLHGTISPMDGIGPEDINIPSLVERLKDEGVKELILAMNPNLEGESTAMYISRLV
                     KPLGIRVTRLAQGLSVGGDLEYADEVTLSRAISGRTEM"
BASE COUNT         6785 a         4038 c         5095 g         6269 t
ORIGIN      
        1 tatatttact ttctgaagac cgccatgatg gtttttgtaa tcataatgtt atataacaga
       61 catatttcta catgataatc ggtgtataat ataaaactgt ataagaataa tatcttctat
      121 tttataagga gggaaacgaa tgcgtaaaaa gtttatcgca gccgtaatag gaacaacagc
      181 agctgccaca gcattatcag cacatgcaga cgcttcaaca acgtatcgtg tacaaccagg
      241 tgattcactt tgggctattg caacaaagta taacatcaca atagcacaac ttaaacaata
      301 taatggatta aactctaact taatctttcc gaatcaagtg ttgaaggttt ctggtggtag
      361 cagtacatca cgcacaacaa ctcatcattc aagccatagc attacgtcat caacagtcta
      421 tacggtacgt tacggagaca ctttatcagg cattgcagcg cgatatggca caacgtacca
      481 aaacattatg aaatggaacg gtttgaacaa cttcttgatt ttaccaggtc aaaagttaaa
      541 tgtaagtggt ccgtctacaa caccaagtcg ttccacagcg aagaagccgg cacctaaaac
      601 gtcttcaaga aatgcgagtt attatacagt acaaccaggt gattcactgt cgttgattgc
      661 gtctaaatat ggtacaacat atcaacatat tatggagtta aatggattaa catccttctt
      721 aattttccca ggtcaacaat taaaagtgag tggatcggca ccgtcacgtc aaacaacacc
      781 gacaccaagt ccaagttatc aatctcctac attcaaccat caaaacttat acgattgggg
      841 tcaatgcaca tggtacgtat ttaataagcg taaagagatg gggcgcccaa tcagtacata
      901 ctggtggaat gcaaatgctt gggatgataa cgctgcacgt gatggttata caattaataa
      961 ccaacccgca gtgggatcaa ttttacaatc tgacttaggt tactatggtc atgtttcgta
     1021 tgtagagcga attaatgctg atggtagtat actcgtatca gaaatgaatt tcactgcagc
     1081 accaggcatt ctcacttacc gtactgtacc agcgcatcgt gtaagtgcct tcaaatatat
     1141 ccattaatca aaaaacgtga gtataccttt tacatggtgc tcacgttttt attttttaag
     1201 acaagggtcg aacgagaaaa ttttcgtcat ttgaaaaaat ccccaaaaag tttgaaatgc
     1261 atgtcatatt ctattaacaa aatggtaaca aacatcttgt cgatgattct taggtaagga
     1321 taaagccgtt gagtaaatcc atttgtatcg tcatattcac agaaacggat gctttaatga
     1381 ttagctttaa aaaattggat gaagcgaaga tataacgact tgagcatctg ggcaatgact
     1441 actacataaa aaaggcgtga acagaaatca taatgtttca tgttcacgcc tatatttaat
     1501 gatttgaaaa tgaatcaagt cgttacccta cccacgtgtg cgaatcgctt ggattttttg
     1561 gataccactc catacttggc gacttgctga gaagaaagac catgcttttg tgaatttgct
     1621 ttttgcacca agtgataaat agaagcttaa tacgacatct actaagccaa gcccaactga
     1681 aatatagctt agcttgcgat tttttgagcg ataaatgtaa gaattgtaaa agtctacaac
     1741 taatgttgcg cctgttaaag cagttgaaag cacacttaat gattttttag attttttagc
     1801 cattatactt cccccaatga atatagtatg atgtcattca ttataacatt actgataggt
     1861 caaaacccaa catatgcact ttccttaaat gattgttaac acgtctttta gatacagcgt
     1921 tgtagaaaaa tttcagtcca atgaccgaaa aacttttgga tgaaaatgtt atcttaattt
     1981 gttatcattc gagtaaggaa caatttgata tataagttat tataaattgg aaatttaatt
     2041 cgacaattac aaataacata aattcctaat ttttagaaca gtatcgagag aaagaggagt
     2101 ggtacacatg aatcaagtta caaaaattgc aatcgcaaca actttatcat taggcacatt
     2161 attaggggca acagctgggg caagtgcaat ccatgcagat gtacatgccg caacggaaca
     2221 gcaaacccct tattacacat ataacggctt atttaacttc aaagggaata aagctttaga
     2281 ggacaaaaac ttttaccgcg cattacaaca cgataacttt aaatatgaag gtttaaaagt
     2341 cggccagtct acattcgctg atgttaaaaa agcggtaggg aacgacgtga aaaaatatta
     2401 tgaagaaaaa ggtgtcactt actacgagaa aaatgatgtc attttcggta ttgatagcga
     2461 aggtaaattg gtcaacatga cattattaat tgaaaaaatt aatcacagtg ataaatctgt
     2521 gcgtgatcat gtgaaacaag gcgaaattta tgatacaaaa acaacacatg tcgcatttta
     2581 ctcaggcaac tcaattgtga ttaaagcaaa agagagtcgt taagattgag gcgtactttg
     2641 cccatacaac gtcatagtta aaaaaactcc gagacttttc gtgaatagta gacgataagt
     2701 ctcggagttt ttgagttgat gagagcttgt ttaagtattt caatttaatg caatctcgtg
     2761 gccttgtgca gcttctgcaa tagacttagc cagacgttgt gtatttgcag gagagtgtaa
     2821 tatatcatac ttattccgat aaactaccaa ataaatgggg agcggtgcga gattcggcga
     2881 cgttttttag gcctgcaggt ggtccactat aaagaatgcg tcccccttga tttcccgcac
     2941 caggtccaac gtcaatgagc cagtctgctc gtgtcatcat cgtgatattg tgttcaatta
     3001 agatgacggt atggccttct tcaataagtt gatcgaagcg tgcctgtaaa attgggatat
     3061 catcttcatg taaacctgtt gtcggttcat cgaaaataaa tatcttttct gtaacaggct
     3121 caatcatgta gcgcgtcagt ttgagtcgtt gaatttcccc gccagataag gtgtcgagtg
     3181 attggccgag tgtcatatag ccgagtcctg tcgattgcaa ggcgcttaac gtttgagcaa
     3241 tggcgtcatg tgtttggaaa agtgacaagc cttcttcaac ggtgagtgct aacacgtccg
     3301 cgatagaata accgtcgact ttcgtttcca acacttctgg acgatagcgg gtccctccgc
     3361 acacctcgca tacttgcgag aagtctggca tgaaggcgag ttcggttttg agcacgcctt
     3421 tcccgttaca atttggacac gcgccatctg agttataact gaacatactt tttttcaatc
     3481 ctgttgcttt actgaaaaac tcacgaatat catcgaaaat acccgtgtac gttaataaat
     3541 tcgatcggtt ggaagtgtgt acgccttttt gatcaatgag tatcgcatct tcatgtttcg
     3601 caaaaccgcc tttaattaag gagctctttc ctgaaccagc gacacctgtt acaaccgttt
     3661 gcgcattttt cgggatcgca acagacacat cttgtaagtt gttgtgttgc aaatgttcta
     3721 agtgtaacca tgcttggttg tcacgaatcg ctgactgttt caagtgatgt tgacgtgtca
     3781 atgcgcgcgc tgtatcggta tcggactgtt taagttgtgc ataactgcct tcaaatgtaa
     3841 tctggccgcc atgtttccct gcgccaggtc cgatgtcaat cacgtgatcc gcaattttga
     3901 tgacgtcggg atcgtgttca acgatgatga cggtattacc tttgtcacgg atattgagca
     3961 tgatttcgtt gattttttca atatctgctg gatgtaaacc gacactcggt tcgtcgataa
     4021 tgtacacgag atcggttaac ggactgttca aatgacgaat aagcttaatc cgttgtgact
     4081 ctccgccaga aagggtcgtt gtttcacgtg cgagcgttaa atagttcagc ccaatatcat
     4141 tcaaagcttg gagttgggct ttcaatggtt cgataatata agtcgctttg tcgctgtcga
     4201 tttgctctaa aaatgggagc gtttcttcaa tcgtcagtgc tgtaaaatcg gcaatgttca
     4261 gtccatgaat tttgcagctg agcacttttt gatttaagcg ttgtccgtga cagacaggac
     4321 atgtttgttt ggtgactacg cgttcaacgt cctttaaaaa gcgtttcttt tcaaagttat
     4381 cattaattaa aaatgagcgt cggaaacggt ggattaaccc ttcaaatttt gcagttttag
     4441 gccattctga gggtggattt ttcaagcgtg ttggctcggt ataaagaaac gtatcgagct
     4501 cttcttttgt atagtctttg agctttttat cattatcaaa caaacccgaa tagcgataac
     4561 gtttcccgcg ccaactatcc ggcttaaatg acggaaagcg aatcgcacct tcatttaaag
     4621 atttgtcgaa atcgagcagt tcattcaagt cgatatcttc aacataacca agcccttgac
     4681 aatgttcaca cattccattc ggattattga acgaaaagac gtctgaataa ccgacgaaag
     4741 gtgtgccaat acgcgaccac aatagccgga cggacgcata aatgtctgaa atggtaccga
     4801 ccgttgagcg cgaattgcca ccgagtcttt tttgattgat gaccatcgcg acgggcaagt
     4861 tttcaatatg gtcaacatcc ggtttttcat attgcgttaa ttggtgctga atataactcg
     4921 aataggtttc gttcaatagt cgttcggatt cagcggcaat cgtattaaaa acgagggaag
     4981 acttgccaga tcctgaacgc ccagtcacga ccgttaactg atgtttcgga atggagacgt
     5041 caatattttt taagttgttt tgacgtgcgc catgaatatg aatcgctgtc atataaattc
     5101 acctcgttca cattgtaccc gttttcaatc gtcttgaagc tcagtctaga tgaaaaggaa
     5161 gttgatggcg atgtttcaca agccaagcag ttatcatagc cgtaatcgga atacagactg
     5221 caatggcgac ccctcctaaa gcaattgtaa tgacttcttg tgtaaataat ttggcattga
     5281 gcatatggcc gaaactgtaa tgcaagttga aaaaccaaaa aacaattgtc attgaacccc
     5341 caatcaatgc gagataaatc gtatttgcag acgtcgctaa aatttctcgg ccgacgcgca
     5401 tgcctgaatg aaacagttcg cgttcggata atgaggggtt cgtctcgtgt aactcaaata
     5461 caggtgagct aatcgtaatc gccaagtcaa tcactgctgc aatgacagca agtagcacag
     5521 taaaaatcat aaactgttcc atatcaatcc caatatttaa ggagaagata tacgtttcgt
     5581 cttgttcttc ttgggtgaaa ccttgtagat gaccccaatg tacggacaag taaacggcga
     5641 caatcattaa taatgtcgtg accgtactcg cgataaatgc agctaaagtt tttgtattaa
     5701 agcggttgag taaaaacaag ttaaccatcg agacaataat acaaaaaatg aaagtaacga
     5761 cataaatagg cgcgccaaaa acgatggcga gtacagtaat gaataaaatg ataaagttta
     5821 aaaatagcgt taaaaatgaa acgagtcctg ttttaccgcc aaatatgagc atgagtatga
     5881 aaagaatcaa acctaagatg acaatggcat tcatcgtgtt gcacctcctc gtaggcttaa
     5941 ccatatacgc atgagaaaaa tggtcaatgg gatagttaag gcgatgccaa tcccgcctgt
     6001 aattgcccgg gaaatttcta aggaccaatt catgctaatg ctgtaagtga gcgtgttgcc
     6061 attttttaaa taaagtaaga gcatcggtaa acttcctgca agatatgaga ataataaaat
     6121 gttcgtcatc gttcccataa tgtcacgacc gatgttacgg cctgcgagca cccaccgttg
     6181 cattgaaatg tgtggcgacc gctttagcac ttcatacatc ccgcttgaaa tcgtaatggc
     6241 gacatccatc actgctccaa gcgttccaac catgacggaa gtaaggaaga cggttctagg
     6301 ttgaatcgtg agaaagctca tcgtttcata tttaatccct tgcccgtgtg ttaaaccgat
     6361 gacactccat gcgataaaaa tacaaatgaa cgtgccgagt aaagtgctga caatggtcac
     6421 aatcgtacgc attgaccaac caatgacgag ccaaagtgtc aaaatcgtcg caatcatgac
     6481 tgcgagactc attaataaaa agagattcag ttgcggatac gcgtgataca aactaatggc
     6541 taacaagatg gcaaacgcgt taataacgag tgataggatg gattgaagtc cgatccgttg
     6601 cccgacaatg agtaatgcaa taaagaacgc gctgatgact gtcacgagta cggtatcgcg
     6661 ttttttctca ataatatatg tatctttttg attttttcct ttgtgcagta gcactttatc
     6721 acccggttga tacgcttgtt cttcagtttt cgaggcgtta taccggtgtt cgacgtgaag
     6781 ggtgtcgcct tgttgttttg tatttaacaa tttgacttgt aacacgtctt tatatttcac
     6841 atcttgatta tgttgttcat ctactgactt ttcttggtga tgactttcaa ttttcgtcac
     6901 ttcaccgagc gggatatgat aaaacgaact attcaaacgt gtgaatacta tcgcacaaat
     6961 cgctacgatg atactcacca cgatgacaat ggtgtttatt tttttcgaaa gttgcttcat
     7021 aaatcattct ccttaatgat aaaccgaacg ttgttgtata tgtgtcatga tgatttggat
     7081 gacttcatca cgtaaaggtt tttgtaaatc gcgtcgataa atgaggcgta acgttttttt
     7141 gaaatctgta tgtgacaatg aaatcttttt ccattgttga ttttgactat ataagttgac
     7201 gtacgttggt gcaagtacga agcctttttg attgcgtaaa ataaagcgtg cgaattgttc
     7261 ttgattcaag acacggacgg gtttgtcggc atgtgttatc aaatacgttt tgaagtctgt
     7321 aggaatcggt tcaagcaagt ataacggttg tttcaatatg tgtgataacg gtggatttgg
     7381 tacgttcatc attggtgcgt gtaaatcccc atataagacg tacgtttctt ctactaatgg
     7441 cactatttca aatgtaggat ccgtcgttgt gacagttgtc agtgcaaaat caatttcttg
     7501 tgctcgcaac gcttgtaatg tctcttgttc atctaacaat gtaggaatga gtgacaagga
     7561 cagctcgttt tcaattgtct gtaacacttg cggtaaaatt tggccgattg agccgtccac
     7621 ataaccgatt gtgaagacgc tttgctgttg ttgtacttgc gtttgaaact gcgacaaagt
     7681 gagatcgact tgctcaagaa tttgttgcgc atattcaagc aactgtttgc cttctgcggt
     7741 taaaaatacg ttacgcccgc gacgataaaa caatgatgtt tcgagttcat tttctaaatt
     7801 atgaatatga cggctaattg cagattgtgc gacgttcaat tcgagtgctg cttcagaaat
     7861 atgttcacgt tttgcgactt cgacaaagta tttgagttgt ttcaattcca taccattcca
     7921 cctcttacaa tttatattat ctcaaaatta gatagatttc atctcaagta tatattgatg
     7981 tgataaatcg ctttgctata tagttgaaat attactaaag ggaggtgtca gaaatgtcta
     8041 acaattattt aaattccaaa atcggacttt atgacagtcg tgaagaacat gacgcttgtg
     8101 ggattggctt ttatgcgaat atgaataatg aacgttctca tgagattgtc gaaaagtctt
     8161 tagaaatgtt acgccgtctc gatcaccgtg gaggtatcgg tgcagatggt attacaggtg
     8221 atggggcagg cattatgaca gaagtgcctt atcaatattt ctcagaagtc actgattttg
     8281 atttgccgac tgaaggtgac tatgcggtag gtatgttgtt tgccaacgtc atgatttctg
     8341 acacaaaaca tgcagcggta atggcatcaa tttttgaagg agaagggctg cgtatcatcg
     8401 gtgatcgtca agtaccggtc gacgtgacgt gtctcgcgcc gcatgtagca gaaacgatgc
     8461 ctgtcattca acaagtcttc gtcgtaaatg agagtgctca agactttaag cgtgcattgt
     8521 accttgcgcg taagcaaatc gaaaaatatg gtgaaagtgc acagttagat ttatatttta
     8581 cgagtttatc gacacgtacc attgtttata aaggatggtt gcgttcagac caaattaaat
     8641 cattatatgt cgatttacaa cagccgtcat acgtatcgaa atttggttcg gtacactcgc
     8701 gttttagtac gaatacattt ccgagttggg agcgtgcaca tccaaatcgc ttgctcatgc
     8761 ataacggtga gattaatacg attcaaggta atgtgaactg gatgcgtgcc cgtcaacgtc
     8821 gcttaattga aacgattttc ggcgaggcgc aacataaagt ccatcaaata ttggatgaat
     8881 cgggcagtga ctcggctatt gtggataacg cactagagtt tttaagttta gcgatgtcgc
     8941 ctgaacaagc agcgatgtta ctcattccag aaccgtggtt gtataacgaa agtaacgatc
     9001 cgaaagtacg cgcattttac gaattttata gctatttaat ggagccgtgg gatggaccga
     9061 ccatgatttc attctgtgat ggtgacaagt taggggcttt aaccgatcgg aacggcttga
     9121 gaccaggccg ttatacaatt acgaaacaaa atgaaatcgt cttttcatca gaagtcggcg
     9181 tcgtggatgt agacgaagca gatgttgtat ttaaagggca actgaatcca ggtaagttat
     9241 tgcttgtcga ttttaatcaa cataaggtta tcgaaaacca tgaattaaaa accgcgattg
     9301 cagagcagca accctatttg gaatggttgg aaacgtatca acacaagctc gatttagaag
     9361 cggtctcata tgcgggtgga cctgtcgctg tagaccatgt tcttaaaatg caacaacgct
     9421 ttggctatac gaaagaagag ttggacaagt atttaactga actcgtgaca ggtggcaaag
     9481 atcctattgg ggcaatgggt tacgacgcac cacttgccgt actcagcgaa cgacctgaat
     9541 cactgtttaa ttatttcaaa caactctttg cacaagtaac gaacccaccg attgatgcat
     9601 atcgtgaaaa aattgtaacg agtgaattga gttatttagg taaagaaggc aacttgctgg
     9661 aaccagggcc ggatgtcctc aagcgggtac aactgaaaca tcccgtgttg acaccagcac
     9721 aattagacgt catcggacaa gaaggcttta cggtagcaga gttttcgaca ggttacacag
     9781 gtggattaaa agaagcgcta gacaatttag gggaagtggt catcaaagcg gtacgtcaag
     9841 gggcagaaat catcgtgttg aatgatagtg acgtcaccga agtagaccag tatgcgatgc
     9901 cgattttatt agcggtgagt catattcatc aattattaat tcgtgaaaat ttacggatgc
     9961 aaacgagcat tgtcgcaagt tctggtgaaa cacgtgaagt gcatcacctt gcttgtttag
    10021 tcggttacgg tgcgaatgca gtcgttccgt atcttgcaca acaaacgatt gcgcaattga
    10081 cagagcacgg tagattagac ggtgtagtag ccgataacgt cgcgcgttac aacgccattt
    10141 tatcagaggg tctgattaaa gtaatggcga aaatgggtat ctctacggtt caaagttatc
    10201 aaggggcgca aatctttgaa gcggtagggt tatcagaagc agtgattaac gattatttta
    10261 cgggcacaac ttctaaatta tcgggcatct ccattgaaac attagacgct gaaaacaagg
    10321 cgcgccaaac gattaaaggt gacacgttag acccaggaag cacatttcaa tggcgtcaac
    10381 aaggtcaaca tcatacattc aatccaacaa cgatacgatt acttcaacat gcgtgtcgcg
    10441 acaatgatta tgcgcagttt aaagcatttt ctaaagtggc gaacgatcaa acgagcagcc
    10501 atattcgaga cttatttgct ttcaaatcac aacaggccat cgatattgca caagtcgaac
    10561 cggttgagga aattgtgaaa cgctttaaaa cgggagcgat gagttatggg tcaatttcac
    10621 aagaagcgca tcaaacatta gcggaagcga tgaaccaact cggtggtaaa agtaatagtg
    10681 gtgaaggcgg agaagcttta tcacgctatg aaccgcaagc agatgggcgc gacttcaaaa
    10741 gtgcgattaa acaagtggct tcaggtcgtt ttggtgtaac gagtcattat ctacaacatg
    10801 cgaaagagat tcaaatcaag gttgctcaag gcgctaaacc aggggaaggc ggacagttgc
    10861 caggcagtaa agtgtatcca tggattgcgg aggtgcgtgg ttcaacacca ggtattggct
    10921 tgatttcacc acccccacat catgatattt attcgattga agacttagcc caattgattc
    10981 atgatttaaa aaatgttaat cgcgatgcag acattactgt gaaactcgtt tctaaatcag
    11041 gtgtgggcac gattgcggca ggggttgcga aagcatttgc agataaaatc gtcattagtg
    11101 gttacgatgg tggaacaggt gcgtcaccga aaacgagtat tcagcatgcg ggattgccat
    11161 gggagcttgg tcttgcagaa acacatcaaa cgctcatgat gaatgattta cgttcacgtg
    11221 ttcgtttaga aacagatggt aaattactga caggtaaaga cgtcgcctat gcatgtatgt
    11281 taggtgcaga agagtttggc tttgcgacag caccgttagt cgtcttgggc tgtattatga
    11341 tgcgtgtctg tcataaagat acgtgtccag tgggtatcgc gacacaaaac ggtgacttgc
    11401 gtaaactcta cacaggtaaa gcgcaacatg tggtgaatta tatgcatttt gtagcagagg
    11461 aattgcgtga aattatggca gaactcggta ttcgtactgt cgatgagctt gtcggtcgta
    11521 cagacttatt gaaacgttca gctgttgcct atcatcatcc aaaagcacgt gaaatgaagt
    11581 tagaaaactt gttgtatcaa catgacggtc cacgtacaaa agagattgaa caacgtcacg
    11641 gtctcgaaca tggttttgac ttgacgacgt tattacccgt atcgcaagcg catattcaag
    11701 cgggcagtcg ctttaaaggt cagttcgaag tcggcaatga acagcgtaac atcggtgtca
    11761 ttacaggtag tgaaattacg cgcgcccacg gtttgaatgg cttgccaaca gatacgattg
    11821 tagttgaaac gcacgggcat gcaggacaaa gtttaggtgc gtggatacca caagggctga
    11881 ccctccatca tacgggtgat gcgaatgact atgtcggtaa aggattatct ggcggcaaaa
    11941 ttgtcgtcaa tgcaccgaat gtcgcacgtg aagccgaaat cattgtcggt aatgtttgtt
    12001 tctatggtgc gacgaaaggt gaagcgtata ttaatgggcg tgcgggtgag cgtttctgta
    12061 tccgtaatag tggcgtacac gttgtcgtag aaggtgtcgg tgatcacggc ctcgaatata
    12121 tgacaggcgg gcgggtcgtc attttaggtg atgtcggcaa aaactttggc caaggtatga
    12181 gtgggggtgt gtgttacgcg ttcccttcag atgttgaaca atttaaaaca cacaatcaac
    12241 tggcaacatt agattttgat gtggtcaagg atgaagcgga aaaagcgatg ttaaaaggca
    12301 tgttggaacg tcatctcgct tatacagaaa gtcaaaaagc agcagtaatt ttagctgatt
    12361 ttgaggcgca gttacagcaa tgtgtcaaag tcattccgaa agattataag caaatggttc
    12421 aaaaaatcca ttatcatcag caacaacatg catcacaaga cgatgcatta ttagctgcat
    12481 ttaatgatga tcaaaatata gatgaagtgg cacaagcgga accaattgct gtgtactaaa
    12541 ggaggctaac tatgggtgaa tttaaaggtt ttatgaaata tgataagcaa aagctcgcag
    12601 aaatgcctct agagacacgc attcaacact atgaggcata tcagtcacgt ttctcacaag
    12661 aagatgcgca acaacaaggg gcacgctgca tggattgtgg gaccccattt tgccaagtgg
    12721 gtgaaatggt ggaacgtgaa acagtgggct gtccgctcgg taactacatc ccagaatgga
    12781 acgatttagt gtatcgcggt gactttaaaa ccgcatatga acgtttagca gagacgaaca
    12841 attttccgga ctttacaggg tatgtgtgtc cagctccgtg tgaagcctcc tgtgtcatga
    12901 agattaatcg tgaatctgta gcgattaaag ggattgaaag aacgattatt gacgaggcgt
    12961 ttgaacaagg atgggtgaag ccgaaaaccc cttcagtacg tcgcaatgaa aaagtagcga
    13021 ttatcggaag tggcccagca ggattagccg cagcagaaga gttgaacgca ttaggatatc
    13081 aagtcgtggt gtatgagaaa aatgcccaac caggtggctt gttggcttat ggtattccga
    13141 atatgaagct cgataaagaa gttgtgtttc gacgtattcg tttattagaa gaagcaggta
    13201 tcacttttca ctgtaatgta gaaatcggta aagatgtgag taaaaacgaa ctggatgaga
    13261 cgtatgatgc cgtcgtcgtt tgtacgggtg cagaaaaacc acgtgacttg ccgttagaag
    13321 gtcgaatggg tcgcggtatt cattttgcga tggattatct gactgaacaa acgcaattgt
    13381 tattgaatga aacggacacg caaacaattt ctgctcaagg taaaaaagtc gtggtcattg
    13441 gtgacggtga tacgggggct gactgtgttg cgacagcatt acgcgatggt tgcgaatcca
    13501 ttatccaatt caaccgtaaa gcgcgtaaac ctgaacgttt tgaatttaac tatagttggc
    13561 cgctcgcaca acctgtattg aagaaagact atgcgcacca agaatatgaa gcgaaatatg
    13621 gtcaagaacc ccgtgcatat ggtattcaaa cgatgcgctt cgatgtcgat gagttggggg
    13681 atgtccgtgg tatttatgcg caagttcaac gtgatcatgc tgacggtaca attgtagggg
    13741 atgatcggga aatttttatt ccagctgacc tcgttttgct cgcgattggc tttgaaggtg
    13801 tcaaatcacc attggcacac gcattgcagt taaaagtaga gcgtcaaaaa attgtggcag
    13861 acacaaaaga ttatcgtacg aatcagtcga aatattttgt agcaggggac gcacgacgtg
    13921 gtcaaagtct tgttgtttgg gcgattaaag aaggccgtga agtcgcgcaa tcagtgcacc
    13981 gctacatagc cagaaaagtt tttatataaa ttttgtaaaa ttcttgttga caatgtgaac
    14041 gagctgtaat aatatatgtt atgtgctcgt cacacggagg aatacccaag tctggctgaa
    14101 gggatcggtc ttgaaaaccg acaggggctt aacggctcgc gggggttcga atccctcttc
    14161 ctccgccatt ataagtaaaa tccaagacta atagatataa aagccaaaca ttcaagtaat
    14221 tgaatgcttg gctttttttg atctttttaa actgaatcgg atttcgacga taagagactg
    14281 ggaaaggaat tttctcggtc tttttatttt cgaaatgtta aaacatgttg cctcccatct
    14341 tgctattgtt ggcaagcgga agcccaatgg ttatctcgag tatgtgttac ataacatgca
    14401 agaaaaaata aaatgtaagc ctttacaaaa cttgtatgta caagttataa tttgtctata
    14461 caagtttctg gataaggagt gacagtgatg gcagtgaaaa agaaagatgt ccgtgatatt
    14521 atcgaagcaa ttggtggaga agaaaatatt caatctgcaa cacattgtgt gacgcgtttg
    14581 agattagtgt taaaagatga caatcaagtg gacaaagaga agttaagcga gaatccactt
    14641 gttaaagggc aatttaaagc ggatcaacaa tatcaaattg taattggtcc tggaacggta
    14701 gacgaagcat acaaggtgtt gatggaagaa acgaatacgc aagctgtatc gaaagaggaa
    14761 gcgaaagcac aagcggctaa aaagggaaat ccgttacaac gtttaattaa gttgcttggt
    14821 gatattttca ttccgatttt acctgctatc gtaacggctg gtttgttatt aggggttaac
    14881 aatgtgttga cgatgaaagg tctaggtaac gcgccgtcca ttattgaaag atttccgcaa
    14941 attgctgatt tcgccaatat tattaatgtc attgcgacaa cggcatttat tttcttgcca
    15001 gcattagtcg gatggagtgc aatgcgtgtg tttggcggca atccggtatt aggaattgtg
    15061 ctcgggctcg tattgatgca tccacagttg ttatcacaat atgacattgg taaagttgat
    15121 gaaattccag cgtggcacat tttcggtttg aagatcgaac aactgaacta tcaagggcaa
    15181 gtactacctg tcctcctcgc agcatacgtg ttagcgcaaa ttgaaaaagg gttaaataag
    15241 gtcgtccatg attcgataaa actccttgtt gtcggtccag tcgctttgtt agtaactgga
    15301 tttttagcct ttttatttat cggacctctc gcgttatgga tgggtacagg tattacatca
    15361 gccgttcaat ttttatttgg caatgcgggt tggtttggcg gcgcagtgta tggcttattg
    15421 tatgcgccac tggtcattac aggtttgcat cacatgtttt tagcagtcga cttccaactc
    15481 atgggaagtg aactcggtgg tacgtactta tggcccattt tagcgttgtc taacatagca
    15541 caaggttcag ccgcatttgg cgcatggttc gtttatcaac gtcgtcaaat gaataaagaa
    15601 caaggtttag cgatgacatc tggtatttca ggctttttag gtgttacaga accggcaatg
    15661 tttggtgtca acttgccatt gaaataccca tttttcgcag ccattttaac gacgatggtc
    15721 actggggcga ttgtaggtgg ctctggcgta ttaggttcag tcggtgtagg tggtttacct
    15781 gcgattattt cgattaaatc acaattctgg ggtgttttcg gtattgcgac gttgatttcg
    15841 atggtcgtac cagcagtgtt aacgatcatt ttcgcaaaat taagtcgtga aaaaacgaaa
    15901 ataatggtca atgacgaaca gtaagtttta acatgttgca cagcacaaag aaaaaaggtg
    15961 ggtttcacat ggtaaggcaa gattggaaaa aatcagtcgt gtatcagatt tatccaaagt
    16021 cttttaacga tacgacaggt aatggggaag gcgatttaaa agggattatt gagaaactgg
    16081 attatttaca atttttaggg gtcgattatt tatggctcac accgatttac gattcgccga
    16141 tgaatgataa cggatatgac attcgtgatt actatcaagt gaatgcacaa tttggggata
    16201 aagatgactt acgtacattg attgatgaag cgcatgcacg aggattgaaa atgatgctcg
    16261 atattgttat caatcataca tctacggaac acgaatggtt tcaacaagcg cagcagtcgg
    16321 tagacaatcc gtatcgagat tattactttt tcagacgttc agaagacggg ccgccgacga
    16381 attggttatc gaagtttggt gggaatgcat ggcaatacga tgagcaaacg gatgcttatt
    16441 atttgcattt atttgatgtt acgcaagcgg atttgaactg ggataatccc gaagtgcgtc
    16501 acgcattgta cgaaatgatt aattattgga ttgatttcgg tgtagatggt tttcgatttg
    16561 acgtaattaa cttgatttct aaagatacgt ttgaagactc aaatgagatt ggtaaagagt
    16621 attacactga tgggccacgt gttcatgact atatccatga aatgaatcgt catacgtttg
    16681 gtgatcgaga tatgatgaca gttggggaaa tgtcgtctac atccattgac cattgtattc
    16741 aatatacgaa tccagagcgc caagagttga gcagcgtgtt taactttcat catttaaaag
    16801 tcgactatcg tgatggacaa aagtggacga accaaaaatt tgatttgttg caattgaagc
    16861 agattttgat ggaatggcaa acgaaaatgt atgctggtaa tggttggaat gcgatttttt
    16921 ggtgtaatca tgatcaacca cgtgtcgttt caaggtttgg tagtgatgcg actgaagcgt
    16981 tacgtcaaca aagtgccaaa acgctagcca ttgctttaca tttattacaa gggacaccct
    17041 atatttacca aggtgaagaa attggtatga cagatccaca ttttcaatcg attcaacaat
    17101 atcgtgatgt agagtcgttg aatgcgtatc gtgaaatgcg tgaagccggg atagatgaag
    17161 cggaaatttt aacgatactc ggacaaaaat cacgggataa ttcacgtacg ccgatgcaat
    17221 ggaatgatga agcacatgct ggttttacaa ctggaacgcc gtggattgaa gtggcaaata
    17281 attacaacac ggtgaatgtt gaagcggcca tggcagaccc ggaatccatt ttatacacgt
    17341 acaaaaagtt aattcagtta cgtcatgaac atgatatagt gacgtacgga gaagttgtac
    17401 cgcgttatct cgatcatccg caactgtttg tgtatgaacg acgctatcaa ggggacactt
    17461 ggttgattat tgtgaatatg acatcagaaa aagtgacatt gccagaagat ttggatcgct
    17521 ctggttcggt cgtccttcaa aatggtataa ttgaagggaa tgagctcgaa gcatacgcaa
    17581 caatcgttgt agcgagataa tgaaaatgag aggcaaggcg gatgaaaaac caaaataaat
    17641 ttcaatatat ttatgaacgt ttacgtatag caattttgga aggggaatat gaatacggcg
    17701 aacaattgct ttctgaacat cagttggtga aaaaatacaa cgtgtcacgt gaaacagtgc
    17761 ggaaaagttt gaacatgctc gtcttggatg gcatgattca aaagattcgt ggtaaaggtt
    17821 cagtcgtcat ttatcaaggc gtgacagagt ttccgtttgc tgatttgaaa agttttaaag
    17881 aggttcaaac gcaactcgga cttcattacg aaacagtcgt cgtccgtttt gaaaagatca
    17941 aagcggcgga cgtgcctcaa gtgaaaaagg cgttggaaat gacaactgat gaggaactat
    18001 ggcatttcat tcgttatcgt caaattgaag gtataacgaa aattgttgat gaagattatg
    18061 tgcgtgcgaa tctgtttcca gagttatctg aagcggtcgt tcaaaactct ttatacgatt
    18121 atattgaaaa agtgaaaggg tatgagatta gtttttcgag caaatcgatt acgttcgaac
    18181 cgtttggaga attggagcgg gcagcatttg gcgatgtgac gccgcaatat tcggccactg
    18241 tacgaggcat cgtccatttg aaagatacaa cgaaatttca gtataatgta tctaaacata
    18301 ttgccactga atttaagttt atcgattttt ctagacgaca ttcacattta tcatgatgag
    18361 tgaaacatta cattattttc attgcttaca atcttgatta tgcttgcaat tttaatctga
    18421 ggtatagtat tattagatgt accgtgctaa gcggggaggt agcggttccc ttaactcgaa
    18481 atccgcttta cgcgaggctg aattcctttg tgaagggtgt gtatttgtga agtctgccca
    18541 gagcacgagg tgtttgaaga tttcggtcct atgcaatatg aacccatgaa ccatgtcagg
    18601 tcctgacgga agcagcatta agtggatcct cgtatgtgcc gtagggtagc cgagatttag
    18661 ctgtcgactc tggtaacgtt tgtgatgcac attcgacaca gaggtgcacg gtttttaatt
    18721 ttaaatgtaa tgtattgtca aatagatgtc agagtggcta ttaagagtcg ctcttttttt
    18781 atactttatt ttaaagctga ggggttgaag taatgtccat atttttaagt acacccaccg
    18841 aaaatgacta tgaggcgaca tatgagatgt tggcgaatgc ttttgaagat gtccctgagt
    18901 ctgatcatca agaacatcat ctcgtcaaac gtctgcgctt gtcaccgaat tatcgttatg
    18961 aattagaagt cgttgcgaaa acagatgaag gcgacatcat cggccacggc atgtgttctg
    19021 aagtgacgat tcaaaatgat gacacgacgt atactgcact tgcattagct ccgttagctg
    19081 tcgtggcgga atatcgtaat aaaggaattg gtcgagcgct cgttcaggct ttagaggagc
    19141 gtgcgtttgc tgagaactat acaacaatcg tcgtgttagg ccatgcggat tactatcaaa
    19201 agttaggtta cgaggaagca atacgacatc atattttggc gccatttgat gtaccgtctg
    19261 aaaactatcg cgtcaaattt ttgtgggata cactcgagga cccacctaac ggtaaagtga
    19321 tctatccgga agcgtttttt gaataggatg tcaccataca aatcagtcgt aacgtgctat
    19381 aatgaaatca ttgttaattc ggaggtgcca aattggatta ccaagcatta tatcgtatgt
    19441 ttcgccccca aagctttgaa gatgttgtag ggcaggagca tgtgaccaaa acacttaaaa
    19501 atgctattgc taaaggtaaa cagtcgcatg cttatatttt tagtgggcca cgtggtactg
    19561 ggaaaacgag tatcgctaaa atatttgcca aagcgattaa ctgtgaagta cgcgatgatg
    19621 gcgaaccgtg taatgaatgt gcaagttgta aaggaatcac acaagggtac aattctgatg
    19681 tgattgaaat tgacgcagca agcaacaatg gtgtcgacga aattcgcaat attcgtgata
    19741 aggtgaaata tgccccgagt gaatcgaaat ataaagtgta cattatcgat gaggtgcaca
    19801 tgttgacgac aggggcattc aatgcgttgt tgaaaacgtt agaagagccg cctgcacacg
    19861 ccatttttat tcttgcgacg actgaaccac ataaaatacc gccgacgatt atttcgcgtg
    19921 cacaacgctt tgacttcaag gcgattaatg ccaaccgtat tgtggatcgt ttgcgctatg
    19981 tggcacacca acaacaaatt gagtttgatg aggctgcttt gacgtttatt gctaaagtgt
    20041 ctgaaggtgg gatgcgtgat gcgctcagta ttatggacca agcgattgca tttggtgatg
    20101 aacgtttgac attaaaggat gctttagatg tgacaggaag tttagatgag tctgatctca
    20161 acgctctttt ccaagacgtt gttcaaggtc acgtccatga agcctttgaa cgttatcatc
    20221 aatttgtgag cgaagggaaa gaagtgaatc gtctcattaa tgacatgatt tattttgtaa
    20281 gagatacgat tatggcaaaa acgacgcaat tagaaacaga atacgatgcg cttatgccat
    20341 tcaatttaga agtcttatac aaaatgatag atgtcattaa cgatacactc gtatccattc
    20401 gatttagtgt gaatcaaaac gtccatttag aagtcttgct cgtgaagtta tctgaaatgg
    20461 tgaaagaagt gaaccgtaca ggtgaagtcg tagtcaatca tgcgccaact gaacaacatg
    20521 acgcgatgat gagacgaatg gaagcgttgg agtctgagtt acaaacatta aaatctcaag
    20581 gcttctcaac cgcgaccgca ccacctaagc caccagcagc agctaaacgt aggggaagcg
    20641 gttcgacgta ttctattgaa caaattgcga aagtattgga taaagcgaat aaagaagaca
    20701 ttgcgcttat taaagaacgt tgggcggatg tcattcaata tgcgaaagat cgcaatcaaa
    20761 aatcgctcgt cagcttactt caaaattcag aacctgtcgc agcaagtgaa gataaagtgt
    20821 taatcaaatt tgacgaagaa attcattgcg aaatcttgaa aaaagatgaa gagaaaaagc
    20881 gaagtattga aaatgtcgtg aaagatatga taaacaaatc tgtagaagtg gtcggtgtcc
    20941 cagctgataa atggatgcag gtccgcagtg attacatttc aaatcgtaaa cgaggaaata
    21001 ctcagagcaa cgcatcagaa gcgaaaaaac cagctgaaca acaaaatgac gtcgtacaaa
    21061 ctgcaaaaga tttgtttggt gaagagatgg tgcatctgat ggacgaagaa acatgacaag
    21121 cgattgaaag gtatgtataa ttgaaatcga atctaagaga gacaagctct tattatcata
    21181 gagttgaaaa ttaaggagga tttatttatg cgcggtggcg gaaatatgca acaaatgatg
    21241 aaacaaatgc aaaaaatgca aaagaaaatg gcagaagagc aagaaaaatt aaaagaagaa
    21301 cacgttgaag gaacagctgg cggtggcatg gtcaaagtcg ttgtttctgg acataaagaa
    21361 gtggtcgatg tcatcattaa tgaagaagtg gtagaccctg aagacgtaga aatgttacaa
    21421 gacctagtat tagcagcaac aaacgaagcg atgaataaag cagatgcatt aactgcagag
    21481 cgtttaggta aacatactaa aggtcttaac atcccaggaa tgatgtaaga tgcattatcc
    21541 tcaaccgata tcgaaactga ttgatagttt catgaaattg ccaggcattg gtcctaagac
    21601 ggctcaacgt ctggcatttc acgtactaga tatgaaagaa gatgacgtcg tacaatttgc
    21661 taaagcactc gtagatgtta aacgagaact cacctactgt agtgtatgtg gtcatattac
    21721 cgaacaagac ccttgttata tttgtgaaga taaacagcgt gatcgttcaa tgatttgtgt
    21781 cgttgaagat gataaagatg tgattgcgat ggagaaaatg aaagaatata aagggttata
    21841 tcatgtgcta cacgggacga tttcacctat ggatggtatc ggacctgaag acatcaatat
    21901 tccaagttta gtagaacgct taaaagatga aggggtcaaa gagttaattt tagctatgaa
    21961 cccgaattta gaaggtgaat ctacagcgat gtacatctca cgccttgtta aacctttggg
    22021 tattcgtgtg acgcgattgg cacaaggttt gtcggtaggt ggcgatttgg aatatgcgga
    22081 tgaagtgaca ttgtcgagag cgatttctgg ccgtacggaa atgtaatggt ttaaacttat
    22141 atgaagaaaa gcgacatggg tggttgcata cgcatgttgc ttttctt
//
LOCUS       DANHOL010000030        21476 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.030, whole genome shotgun sequence.
ACCESSION   DANHOL010000030 DANHOL010000000
VERSION     DANHOL010000030.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 21476)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21476)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21476
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.030"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(49..1533)
                     /locus_tag="PTC08_000785"
     CDS             complement(49..1533)
                     /locus_tag="PTC08_000785"
                     /EC_number="1.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate dehydrogenase"
                     /protein_id="HDK5682308.1"
                     /translation="MNKTINHVPALITIFGATGDLSHRKLFPSLFHLYQQDNLDERVA
                     IIGIGRRELTNDDFRAQVKSSIQEHVQDTKHLDKFMQHVFYQPHDVSDEESYQKLLEL
                     SESLDREFSLDGNRVFYLAMAPRFFGVVTDFLKSSGLTNTKGFKRLVIEKPFGSDLKS
                     AEELNEQIRRSFKEEEIFRIDHYLGKDMVQNIEVLRFSNAMFEPLWNNKYISNIQVTS
                     SEVLGVEDRGGYYETSGALKDMVQNHMLQMVALLAMEPPISLNSDDIRAEKVKVLKSL
                     HVLQPDEVRNQFVRGQYDQGFINGQEVKAYREEDKVAADSTTPTFVSGKVEIDNFRWA
                     GVPFYIRTGKRMKRKSIQVVVEFKEVPMNLYYQKDKHLDSNLLVINIQPNEGVSIHLN
                     GKKYVQGIETEPVQLSYAMSAQDKMNTVDAYENLLYDVLKGDATNFTHWEELKSTWKF
                     VDSIQQAWDHFEPEFPNYESGTNGPLDSDLLLSRDGFKWWNDIQ"
     gene            1689..2606
                     /gene="rnz"
                     /locus_tag="PTC08_000786"
     CDS             1689..2606
                     /gene="rnz"
                     /locus_tag="PTC08_000786"
                     /EC_number="3.1.26.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease Z"
                     /protein_id="HDK5682309.1"
                     /translation="MEITFFGTSAGLPTKERHTQSIALKLEPYATDVWLFDVGEATQH
                     QILHHSIKLGKVSHIFITHMHGDHVFGLPGVLTSRSFQGGESKPLTVIGPKGIKDYVE
                     YNLSLTYSHLNYPLHIIEIEDQMNLSINGFEVNARPLNHGIPCFGYRIQAPDTPGKLD
                     VQKLQALGMPPGPQYQKVKSQDTFEFEGQIYNANDFKGPDKKGQVVTIFGDTRPSQYA
                     LELAKDADVLVHESTYIDGDKTLANAYHHSHIEDVLALIEKASVKHGLLTHISSRYMK
                     EDINEIETKLKVHSPLSFQFVEDFDSYQF"
     gene            complement(2731..3546)
                     /gene="proC"
                     /locus_tag="PTC08_000787"
     CDS             complement(2731..3546)
                     /gene="proC"
                     /locus_tag="PTC08_000787"
                     /EC_number="1.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroline-5-carboxylate reductase"
                     /protein_id="HDK5682310.1"
                     /translation="MKIVFYGAGNMAHAIFTGILNSKVVPADNIYLTNRSNEDMLKEY
                     EEDLGVQYSYDDAALLKDADYIFLGSKPHDFDQLADRIKLHVEPNNRFISIMAGLPIS
                     YIKEKLDTTNPIARIMPNTNAHVGHSVTGVSFSSNFGGKAKDEILEIINAFGTALEVQ
                     ENHLHQVTAITGSGPAFLYHVFEQYVIAGTKLGLEKSQVEESIRELIIGTSKMIERSD
                     LSMEQLRKNITSKGGTTQAGLNALSEYDIEGIFEDCLNAAVNRSIELSAQDDD"
     gene            3632..4387
                     /locus_tag="PTC08_000788"
     CDS             3632..4387
                     /locus_tag="PTC08_000788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HDK5682311.1"
                     /translation="MQQGHFLITGGTSGLGYALAQALISAHFSITLLVRDVNKARSLF
                     PNSEVQIIQCDLTTESDVNQIARHFNNQTQFDGVIHSAGLGYFKGLLEHTPVEILQTY
                     QVNVVHFSMLINQCAPFLTKHASIVGISSQAALATQPYAAHYGGSKAAFNHVLNALRI
                     EQPQWHVLNVNVGPIETPFHAKADPSGRYARKMKKIMLNPEQLAEKIVHAIQHRQQEL
                     NMPQSVHFLLKLYQLAPRFFEKIGRPFFLGKKH"
     gene            complement(4384..5304)
                     /locus_tag="PTC08_000789"
                     /pseudo
     CDS             complement(4384..5304)
                     /locus_tag="PTC08_000789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613863.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
     gene            5384..5926
                     /locus_tag="PTC08_000790"
     CDS             5384..5926
                     /locus_tag="PTC08_000790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HDK5682312.1"
                     /translation="MHFEEKTISKESIYKGKIIEVEKHKVSLPNNETAYREVVKHNGA
                     VAICALTPDQQVILVKQYRKALEQELLEIPAGKLEPGEDRESAAMRELEEETGYKAKK
                     LTLIGEVYGTPGFSNEKISVYFADNLVEGKVNLDEDEFVEKVLYSLDDVKKAVEARTI
                     EDAKTFIAFQHLLLHYNHSK"
     gene            6031..6486
                     /locus_tag="PTC08_000791"
     CDS             6031..6486
                     /locus_tag="PTC08_000791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor"
                     /protein_id="HDK5682313.1"
                     /translation="MEERLNRVKQQLQQSSYKLTPQREATVRVLIENEADHLSAEDVY
                     LKVKEKAPEIGLATVYRTLELLADLKVVDKVSFGDGVSRFDLRKEGSKHFHHHLVCME
                     CGRVDEIEEDLLPQVEERVENEYNFKILDHRLTFHGICETCQKEGKGAK"
     gene            6526..7413
                     /gene="xerD"
                     /locus_tag="PTC08_000792"
     CDS             6526..7413
                     /gene="xerD"
                     /locus_tag="PTC08_000792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016425129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific tyrosine recombinase XerD"
                     /protein_id="HDK5682314.1"
                     /translation="MEEIRDEYLRFIQIEKGLSNNTIAAYRRDLNHYLNYLAEHKVAN
                     LNFVDRQMIQEWFGFLHDEGRSAKTIARFTSTIRSFHQFALRENYTSHDPTVLIETPK
                     YDRKLPDVLSIAEVEQLLMAPDESKVNGYRDKTMLELLYATGIRVSELINIEVEDINL
                     MMGFVKVFGKGSKERIVPLGETVIDCLTHYIHNIRPQLLKHTVTHVLFLNLHGKPLSR
                     QGVWKMIKQTGVKAGIMKRLTPHTLRHSFATHLLENGADLRAVQDMLGHSDISTTQLY
                     THITKNQIRKIYQDYHPRA"
     gene            complement(7700..8206)
                     /locus_tag="PTC08_000793"
     CDS             complement(7700..8206)
                     /locus_tag="PTC08_000793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF309 domain-containing protein"
                     /protein_id="HDK5682315.1"
                     /translation="MLENDLVHFYYQFHHEQHYFLCHDILEEAWKMQHAFSKQDAVVS
                     LILLATGSYHYRRGNFKGAHKTFNKAYQIIVNYSEETMATLGLVRKAYLNILTQLIQD
                     TAQEIPFSPIQLPLTATMIVKVKTQFPGFQVTDTVVETPMILHHHQLRDRSDVITARE
                     AALEERRK"
     gene            8301..9029
                     /locus_tag="PTC08_000794"
     CDS             8301..9029
                     /locus_tag="PTC08_000794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="segregation/condensation protein A"
                     /protein_id="HDK5682316.1"
                     /translation="MYEVKLDAFNGPLDLLLHLINEFEIDIYDIPMRELTEQYMQYVH
                     AMKKLEINIASEYLLMASELLMIKSKMLLPDTSSDLVEDEDPREALVEKLIEYQNYKA
                     YSEMLEEKRQAREHYFTKPPTDLSHYEYSERLPENTTIDLTKLIVAYQKMKTRVSLKK
                     PTTVDIRKETYTIQQSTTYIYDKLKKVPQITFFDLFTFNESIEHVVTHFLALLEMSKT
                     GMIQLQQVKAFHNFEIRKGVNYDA"
     gene            9019..9561
                     /gene="scpB"
                     /locus_tag="PTC08_000795"
     CDS             9019..9561
                     /gene="scpB"
                     /locus_tag="PTC08_000795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002483233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SMC-Scp complex subunit ScpB"
                     /protein_id="HDK5682317.1"
                     /translation="MTLKVTEALTAILYTVGEDGIDEAQLLASLDVDYETLNRAIDTL
                     ELPGLMVQKFGQTYVLTTQKEAEPYIESLIINKASTKLSQAAMEVLAIIAYNQPMTRN
                     DIELIRGIQSDGPVKTLIAKGLVEPKTNPEARGQQLFTTDLFLNVFGLESLEALPTTD
                     EEEEEIESFFSQLVNQKGDS"
     gene            9562..10308
                     /locus_tag="PTC08_000796"
     CDS             9562..10308
                     /locus_tag="PTC08_000796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA pseudouridine synthase"
                     /protein_id="HDK5682318.1"
                     /translation="MSQQLERLQKRIANSGYTSRRKAETLIEEGKVQVNGKTVTELGT
                     KVRPSDEVTVEGIPLEQEDKLYILFYKPAQVITSVSDDRGRKVVTDYFDDLVTRIYPV
                     GRLDYDTSGLLLLTNDGEFTNLMTHPRYKIPKTYVAKIEGYILREQVKQLEKGIQLED
                     GLTQPAKVKVKKQNKEKNTSLVEITITEGRNRQVRRMFEHFGFSVQKLSRVSFGPLTL
                     KGLGAGEGRVLSPHEVKSLRHLAENGQQQR"
     gene            10420..11142
                     /locus_tag="PTC08_000797"
     CDS             10420..11142
                     /locus_tag="PTC08_000797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002449874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HDK5682319.1"
                     /translation="MTNEILVVDDEHRIRKLLKLYLEREGYVIAEASDGREALDMATK
                     YDYSCILLDLMLPEMDGLEVAVKLRELKDTPIIMLTAKGEENNRVEGFESGADDYIVK
                     PFSPREVVLRVKALLRRTESSKAEQNEPHARDMIEFKHLTIDNDAHKVLADGTPVNLT
                     PKEYELLIFLAKTPNKVFDREQLLKEVWHYEFYGDLRTVDTHVKRLREKLNRVSADAA
                     KMIQTVWGVGYKFEVSKSDETT"
     gene            11129..12886
                     /locus_tag="PTC08_000798"
     CDS             11129..12886
                     /locus_tag="PTC08_000798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing protein"
                     /protein_id="HDK5682320.1"
                     /translation="MKRLNNVVVKLWLTIILIVTTVLILLSAALITFFQYYFTQETER
                     ALYQSAENVNQVLLKNDNRKLAIEHSEALLEDNKGLIILPDRAHINEKDTVKKKMLKE
                     ISEHPNFDRVLKNNHSELQHVTFKIDGKTHTYVLLGYPSKDNNGQSSAIFIYQDLKSI
                     DDTNNIITVMILITAVVFLAITTVFAFFLSTRITNPLRQLKTQAKEVARGNYDKRVPI
                     QTRDEIGELAMTFNKMSRSIQTHIDALTTSKNIRDTLINSMVEGVLGINHKKQIIISN
                     ALAERMLSEFNESDREMFNLQIEDTFESQKTEYREYEMNQRFYVIIMSHIKKIQTNGE
                     GGLVAIVRDMTNEHELEQVKKDFIASVSHELRTPISLLQGYTESIVDGVVTEPEEINE
                     FLTVVLDESKRLSRLVNELLNVAKMDAEGLNVTQELQPMQDLVRKMAMKYRQQAQELN
                     LTLDFQMDGEMASLWYYDFDRMEQVLTNLVDNASRYTQPGDTISIKATADHDHQILTI
                     EDTGVGIAPQHLEKLFERFYKVDSARKRGSQGTGLGLFITRMIVNAHGGHIRVESELD
                     KGTKFIISLPKKSHVEEID"
     regulatory      13042..13180
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00050"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="FMN riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="flavin mononucleotide"
                     /db_xref="RFAM:RF00050"
     gene            13246..13791
                     /locus_tag="PTC08_000799"
     CDS             13246..13791
                     /locus_tag="PTC08_000799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ECF transporter S component"
                     /protein_id="HDK5682321.1"
                     /translation="MKQKQTKRMITVGMLSAIAIVLTFIKFPLPFLPPYLTIDFSDAP
                     ALLATFTLGPVAGLLVELIKNLLNFFFNLSDPVGPIANFLAGASLLLVSYGIYRNNQS
                     TKHLILGLITGTIVMTIVLAVMNYFVLLPLYGMIMNLTDIANNLKLIIAAGIIPFNII
                     KGALISIIFILLYQRIGHILK"
     gene            complement(14054..14302)
                     /locus_tag="PTC08_000800"
     CDS             complement(14054..14302)
                     /locus_tag="PTC08_000800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002449743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin"
                     /protein_id="HDK5682322.1"
                     /translation="MAKYTIVDMDTCIACGACGAAAPDIYDYDDEGIAYVILDDNQGT
                     TPVPEELYEDLEDAFEGCPTDSIKVEEESFDGDALKFE"
     gene            14404..15351
                     /locus_tag="PTC08_000801"
     CDS             14404..15351
                     /locus_tag="PTC08_000801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDK5682323.1"
                     /translation="MKQLILYLYHHASAYKTKKSIFNIIIGKKSHQTFFDAVSLNILS
                     LYGCAPKLKYEQLEQMISHESYHHTTIQTSNRMTYSTLDATFKAFQLLVQTVSHIQHN
                     QRTFLPITSQVDIHEVVRLIYYEIEQQQLQDAFEEEVTTLFKMLSEKHDTLYTHYLLT
                     GYDEPMYTFAQISMIESIDIHDLYTAYYEELLSIYLFIQNADTFPILSQCIMPIELSD
                     RVMQTLQLLQKGYSIAKVAQIEQVRETTIKDHILDLFMKQLLTNYDDFFTHPYNEFLK
                     FYQAHPYQRLKLYKEQFDTLSYFELKLAIIGSAKGELHA"
     gene            15344..16720
                     /locus_tag="PTC08_000802"
     CDS             15344..16720
                     /locus_tag="PTC08_000802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecQ"
                     /protein_id="HDK5682324.1"
                     /translation="MLKDALKQYFGFTTFRPGQESIISSVLEGQHTLGILPTGSGKSL
                     CYQLPTYMKQQPTLVISPLISLMDDQVMQMKMQGEHHVVAIHSGMEQAAKKRAFQQLT
                     QARFIFVSPEFILQPHHFHLFKNIRFGMIVLDEVHCLSEWGFDFRPHYALIGKVIRYF
                     NEATILALTATATRHLKDDIQRVIQKSIHVIEHSMDRPNVALSVKFMLSYEEKVNWLI
                     DTIATSGPTIVYVSSKKVSLDLATSIYEAGYLTGIYHGDLSYQERHTVQQQFLNNDIR
                     IIVATSAFGMGVNKPDIRTIIHFHVSTTPSSYLQEIGRAGRDGLPSQAIALFQPDDQY
                     LMETLALVNIMHASDVDQYEVGQMIDSEKRAILDVLTEAFSFQQLRQIFTQNEDMKRQ
                     GYRHMYHYILTKQCRRQHLLNYFGMTKETTDACCDQCEALSPVYEKNKKKVKRKLTYI
                     EKLENLFH"
     gene            16895..18250
                     /gene="ebpS"
                     /locus_tag="PTC08_000803"
     CDS             16895..18250
                     /gene="ebpS"
                     /locus_tag="PTC08_000803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elastin-binding protein EbpS"
                     /protein_id="HDK5682325.1"
                     /translation="MSKDNFKDEFERSRQEIKSHHHDEDETTEAINEKDDQPQASQEQ
                     QFPPRNASRRHRKRDFGISKAKPTQKDTQTNPQEAAADKKTGPIGGVKKSDDNHLNHT
                     QHDAEGKRAQTADSMQNEPAKEDTKGQRAATSGHTAVGTGANVQMTNNKKQQPKVTNE
                     AQSNQQGEQQEPRKSKKALATGAGLGATGVARAGMEKNDQSPKQDENPTLEDSKPQGN
                     KGKKAAAGVSTGAATGLGASKAHAQQTPERQPETESSETTVSNGSGGGFFKKLLPLLA
                     AIILLGTVAIFGGMYLFNQDHQNDNQQEVAQKEDTKKNSDDNQQSQSKNEDDKQDDSD
                     KATASKDSDDNSKDDNDQSESDANNSDNSNASDPNETSNPNNSQNDVNNSNINNQQNT
                     YQQGQSAGGQTHVVNGNQNLYRIAIQYYGNGSPENVEKIKRANGLQNNNISNGQQLII
                     P"
     gene            18496..19482
                     /locus_tag="PTC08_000804"
     CDS             18496..19482
                     /locus_tag="PTC08_000804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YpdA family putative bacillithiol disulfide
                     reductase"
                     /protein_id="HDK5682326.1"
                     /translation="MKTVESIIIGGGPCGLSAAIEQKKKGIDTLVIEKGNIVDAIYHY
                     PTHQTFFSSSDKLSIGDVPFIVEELKPRRNQALVYYREVVKHHQLKVNAFEEVLTVKK
                     MHDHFTLTTTKDVYQCRYLTVATGYYGQHNTLEVEGAELSKVMHYFKEPHPYFDQDVV
                     IIGGKNSAVDAAIELEKAGARVTVIYRGETYSPAIKPWILPNFESLVRRGNVQMHFNS
                     QVTKITEDQVMFEKEGETITIDNDYVFAMIGYHPDYDFLQSIGIDIHTNEYGTAPVYN
                     SETYETNIENCYIAGVIAAGNDANTIFIENGKYHGEAIARHILTKKQSPLES"
     gene            complement(19779..20747)
                     /locus_tag="PTC08_000805"
     CDS             complement(19779..20747)
                     /locus_tag="PTC08_000805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparaginase"
                     /protein_id="HDK5682327.1"
                     /translation="MKNLLVIHTGGTISMSEDESNKVMTNDDNPITHHQDVIAQYANI
                     DEQVPFNVPSPHMTIDNVKILKEIIEDPDHLTHYDGYVITHGTDTLEETAFLLDLTIS
                     TSKPVVITGAMRSSNEIGSDGLYNFISAIRVAIEEESAGKGVMVVFNDEIHTARNVTK
                     THTSNTNTFQSPNHGPLGVITKAGVYFHHRPYARQFLTNINASLQIPLIKAHMGMGCE
                     MLDFYAERHVDGLVIEALGQGNLPPTAMPGVNACLDKNIPIVLVSRSFNGIVSAVYAY
                     EGGGHQLFEKGVIFSNGLNGQKARLKLLVALSNDFQHDQIQDYFNV"
     gene            20821..>21476
                     /locus_tag="PTC08_000806"
     CDS             20821..>21476
                     /locus_tag="PTC08_000806"
                     /EC_number="2.7.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(d)CMP kinase"
                     /protein_id="HDK5682328.1"
                     /translation="MKAINIALDGPAAAGKSTIAKRVAAQLGMIYVDTGAMYRAITYY
                     YLNNKERFTDFTSLISEIDLRLGYDAEKGQRVFLNDNDVTDFLRENDVTQNVSYVSSI
                     KEVRQFLVQVQQKLAADKGIVMDGRDIGTTVLPDAEVKVYMIASVEERAERRYKDNQE
                     RGIESSIEQLKKDIAERDAYDMNREISPLKKAEDAIEIDTTGLSIEQVTDKILSLVNA
                     V"
BASE COUNT         7156 a         3896 c         3931 g         6493 t
ORIGIN      
        1 atgtgagtca cttagctgat gtgtatcaat gaagatgtat gcttatcttt attgaatatc
       61 gttccaccat ttaaagccgt cacgacttaa taataaatca ctgtctaatg gaccatttgt
      121 tcctgattca tagttaggga attctggttc gaaatgatcc caagcttgtt gaattgaatc
      181 cacaaatttc catgttgatt tcaattcttc ccaatgtgta aagttcgttg cgtcaccttt
      241 taacacatcg taaagtaagt tttcataagc atccactgtg ttcattttat cttgtgcact
      301 cattgcataa gataattgta ctggttcagt ttcgatacct tgaacatatt ttttaccatt
      361 gaggtgaatt gacacacctt cattaggttg aatgttaatc acaagtaagt tggaatctaa
      421 atgtttatcc ttttgataat ataaattcat cggtacttct ttaaattcta caacgacttg
      481 aatcgattta cgtttcatac gtttacctgt acgaatgtag aatggcacgc ccgcccatct
      541 gaagttgtcg atttctactt tacctgacac gaaagtaggg gtagtcgaat cagcagcaac
      601 tttatcttct tcacggtaag cttttacttc ttgaccatta ataaaacctt gatcatattg
      661 accacgaaca aattggtttc tcacttcatc tggttgaagc acgtgtaatg attttaacac
      721 ttttactttt tcagcgcgga tatcatcact atttaaacta ataggtggct ccatcgccaa
      781 taacgcaacc atttgtaaca tatggttttg taccatatct tttaaagccc cgctcgtttc
      841 gtaataaccg ccacggtctt caacaccaag cacttctgaa gatgtcactt gaatatttga
      901 aatgtattta ttgttccata atggttcgaa cattgcgtta ctgaaacgta atacttcaat
      961 attttgcacc atatctttac ctaaataatg gtcgatacgg aaaatttctt cttctttaaa
     1021 tgaacgacgg atttgttcat taagctcttc agctgatttc aaatcactgc cgaatggttt
     1081 ttcgataaca agacgtttaa agccctttgt attcgttaaa cctgaagatt ttaagaaatc
     1141 cgttacgaca ccaaaaaatc gaggtgccat tgctaaatag aagacacggt tgccgtctaa
     1201 tgaaaattca cggtctaatg attcgcttaa ttctaataat ttttggtagc tttcctcatc
     1261 actgacatcg tgtggttgat aaaatacatg ttgcataaac ttgtctagat gttttgtatc
     1321 ttgtacgtgt tcttgaattg acgatttcac ttgagctcta aaatcatcat tagttaattc
     1381 acgtcttccg ataccaataa ttgccactct ttcatctaaa ttgtcttgtt gatataagtg
     1441 aaagagtgat ggaaaaagtt tacggtgact taaatcacca gtggcaccaa aaattgttat
     1501 gagtgctgga acatgattaa ttgtcttatt caagattcaa aaccccaatt cttaatttta
     1561 gttcatacat taatgatgtg tttattatag aacatatcgc gttttcggtc atatattctg
     1621 ctttacactt aaaatttgcc gtttgttcgt cgttttatga taatataacg ctaaaggagg
     1681 tacgatgcat ggaaattaca tttttcggta caagtgctgg attacctaca aaagaacgcc
     1741 atacacagtc aattgcgctt aaactcgaac cgtatgcgac tgatgtttgg ttatttgacg
     1801 tgggtgaagc aacacaacac caaatattac accattcaat taaactcgga aaagtcagtc
     1861 atatttttat tacacatatg catggcgacc atgtattcgg tttacccggt gtgttgacga
     1921 gccgttcatt tcaaggtggc gaatccaaac cattgactgt cataggacct aaaggcatta
     1981 aagactatgt tgaatacaat ttatcactca catattcaca tcttaattat ccattacata
     2041 tcattgaaat agaagatcaa atgaatttat ctattaatgg attcgaagtt aacgcacgtc
     2101 cactgaatca tggtatcccg tgttttggct atcgtattca agcgcctgat acgccgggta
     2161 agttagatgt gcaaaaatta caagcacttg gtatgcctcc aggaccacag tatcaaaaag
     2221 tgaaatcaca agatactttt gaatttgaag gtcaaatcta taatgccaat gactttaaag
     2281 gacctgataa aaaagggcaa gtggtgacga tttttggcga tacacgaccg agtcaatatg
     2341 cgcttgagct ggctaaagat gccgatgtat tagtgcatga gtctacttat attgatggcg
     2401 ataaaacatt agcgaatgcg tatcatcata gccatattga agatgtcctc gcgttaattg
     2461 aaaaagctag cgtaaaacac ggactcctca cacacataag tagtcgttac atgaaagaag
     2521 atattaatga aatcgaaacg aaattgaaag tccattcgcc attatccttc caatttgtag
     2581 aagatttcga tagctatcag ttttaatgtc attatattgc tatacaaaaa gaaagggtgg
     2641 gagcatatca atatcatgtt ttcccagcct tttcctagtt ttaagttatg aagttacttt
     2701 gcacgcacac agttaagttg atttatccac ttaatcatca tcttgtgctg agagttcgat
     2761 acttctattc acggcagcat ttaaacaatc ctcaaatata ccctcgatgt catattcaga
     2821 taaagcgttt aaacctgctt gtgtggtacc gccttttgaa gtaatgtttt ttcttaattg
     2881 ctccatactt aaatctgaac gttcaatcat tttactcgtt ccgataatta attcgcgaat
     2941 cgattcttcc acttgcgatt tttctaaccc taattttgtt cctgcaatca catattgttc
     3001 gaagacatgg tataaaaatg cagggccact tcctgttatc gctgtcactt ggtgtaagtg
     3061 attttcctgt acttctaatg ctgtaccgaa tgcattaata atttctaaaa tttcgtcctt
     3121 cgctttaccc ccaaagtttg aagaaaagct cactcctgtc acagaatggc cgacgtgggc
     3181 atttgtattc ggcataatgc gtgcaatcgg attcgtcgtg tcaagctttt ctttaatgta
     3241 agaaatagga agccctgcca taatagaaat aaatcgattg tttggctcta catgtagctt
     3301 aattctgtca gccaattgat cgaagtcatg tggtttcgag cctaaaaaga tatagtcagc
     3361 atcttttaac aaggcggcat cgtcataact atattgaaca cctaaatctt cttcatattc
     3421 tttcaacatg tcttcgtttg aacgatttgt taaataaatg ttgtctgctg gaacaacttt
     3481 tgaatttaga atacctgtaa aaatcgcatg cgccatattg cctgcaccat aaaatacaat
     3541 tttcatacga actatcactt cctaaaagta ttttcttgtc ttatagtaac atataaccac
     3601 attttattga gtcaaatagg ggagagatac aatgcaacaa ggccattttt taattactgg
     3661 tggtacgagc ggtttagggt atgcactcgc acaagccctc atatctgccc atttttctat
     3721 tacactactt gtacgtgatg taaacaaagc aagatcgtta tttccaaatt cagaagtaca
     3781 aataattcag tgtgacttga cgacagaaag tgatgtaaat caaatagctc gacattttaa
     3841 taaccaaacg caatttgatg gcgtgataca ctcagctgga ctcggctatt ttaaaggatt
     3901 acttgaacat acacctgtag aaattttaca aacgtatcaa gtgaacgtgg tgcatttctc
     3961 aatgttaatc aatcaatgcg cacctttttt aacaaagcat gcttctattg ttggaatcag
     4021 tagtcaagcc gctttagcaa cacaacctta tgcagcgcat tacggcggaa gtaaagcagc
     4081 ctttaatcat gtacttaacg ctttacgtat cgaacaaccc caatggcacg tgctcaacgt
     4141 caatgttgga cccattgaga caccttttca tgcaaaagca gatccatctg gtcgttatgc
     4201 acgtaaaatg aaaaaaataa tgttgaaccc tgaacaactc gccgaaaaga ttgttcacgc
     4261 gattcaacat cgccaacaag aactgaatat gcctcagtcc gttcattttt tacttaaact
     4321 ttaccaactc gcaccacgtt tttttgagaa aataggacga ccctttttct tagggaagaa
     4381 gcactaactg ttaggcattt cccaatgttg tgcatagtgt aagtgtttca ctatatcaga
     4441 ggcttgttct aaatgtgctg ggttgacttc ttgatgatag tgcgtcacat tttgttgtaa
     4501 ttgctcaact gaacttgcac cgacaatgat agaacctaaa acatcaaatg actttaaata
     4561 attgaatgct aatcctgtca attctgggtt catttgctgt aatgccgtta cagtttcttt
     4621 cagggcatga tgatcatagt caaaaatgcc ctcagcaaat tttgttgtta acactttttc
     4681 agcacttggc gttaataaac ctttgaatac aggaccgcgt gcgagcaatt tcacaccttt
     4741 gtcttggacc tcatccaata aatcgatggg tctattatcg attaaattga attgagtcat
     4801 taacgtttcg atttgactat attgtaaata ataacgaatc acattaggac gaattgaaga
     4861 aagaccatac gcacgaatga cgccttcttg tttcagttca tcaaacgcac taattgtttc
     4921 atcaagtgga tcgtcaatcg tacccccgtg taacatatat aaatcgagtg tatctaatcc
     4981 aagccgttgt aatgagtttt tcacatttcc tttaatgtaa cgtttggaag gatctcaaaa
     5041 tgtttcaccg ttttccttta aatgattccc cacctttgtg cctatcacaa tatcatcacg
     5101 gttttgatac tttttaagtg tgcgaccaac gattttttca ttgacccctt gatcataaat
     5161 atctgctgta tcaaaatatg taatccctgc tgtcactgct gcatcaataa tttcttcagc
     5221 tttattttct tctgtaccta aactcataca tccaaggccg agctcagata attcgatacc
     5281 acttttcaaa acattttttt gcatgatgcc actccttccg ataaaatcat tgtatattca
     5341 tgatagcaaa ccgtatgaat atttgaaaag gagaggactc accatgcatt ttgaagaaaa
     5401 aactatttct aaagaatcca tttataaagg gaaaattatt gaagtagaaa aacataaagt
     5461 gtctttacca aacaatgaga ccgcttatcg tgaagtggta aaacataacg gggcagtcgc
     5521 aatttgtgct ttaacaccgg atcaacaagt tattttagtg aagcaatatc gtaaagccct
     5581 agaacaagag ttgttagaaa tacctgcagg caaacttgaa cctggagaag accgcgaatc
     5641 tgcagcgatg cgagagcttg aagaagaaac aggatataaa gcaaagaaac tcactttaat
     5701 tggtgaagtt tatggcacac ctggtttttc aaatgagaaa atttctgttt attttgcaga
     5761 taatttagtt gaaggtaaag tcaacctaga tgaagatgaa tttgttgaga aagtgcttta
     5821 ttcattagat gatgttaaaa aagctgttga agcccgtacg attgaagatg cgaaaacatt
     5881 cattgcattt caacatctat tattacatta taatcattct aaataagaat cgaaaaaagg
     5941 ttgctttttt tctcaattac tggtaattta taacaagaaa acatgtctaa ttgtaataat
     6001 tataattttc agtagaggag tgaggcttcc gtggaggaaa gactgaatcg cgtgaagcaa
     6061 cagttgcagc aatcttctta caaattaaca ccgcaacgtg aagcaaccgt gcgtgtattg
     6121 atcgaaaatg aagctgacca tttaagtgcc gaagatgttt atctaaaagt gaaagaaaaa
     6181 gcaccagaaa ttgggctcgc aactgtttac cgtacattag aactattagc agatttgaaa
     6241 gttgtcgaca aagtgagttt tggcgatggt gtttctcgat ttgatttacg taaagaaggc
     6301 tcaaaacatt tccaccatca tttagtttgt atggaatgtg gccgcgtaga tgaaattgaa
     6361 gaagatttat taccgcaagt tgaagaacgt gtagaaaatg aatataactt taaaatttta
     6421 gaccatcgtc tgacatttca tggtatttgc gaaacttgtc aaaaagaagg caagggggct
     6481 aaatgataat caagtacagt tcttgaacag aattgggggc aatctatgga agaaattcga
     6541 gatgagtatt taagatttat tcaaattgaa aaagggctat ccaacaatac gattgctgct
     6601 tatcgccgtg atttgaatca ttatttgaac tatttggctg agcataaagt cgcgaatttg
     6661 aactttgtgg accgccaaat gattcaagag tggtttggtt ttttacatga tgaagggcgc
     6721 tcagcaaaaa ccattgcacg ctttacatct acaattcgga gtttccatca gtttgcttta
     6781 agagaaaact atacctcaca tgatccaact gtacttatcg aaacgcctaa atatgatcgt
     6841 aaacttccag atgttttatc tatcgcagaa gttgagcaat tattaatggc gcctgacgaa
     6901 tcgaaagtta acggctatcg agacaaaaca atgctcgagc tactgtatgc aacaggtata
     6961 cgtgtttctg aattgatcaa tattgaagtt gaggatatca atttaatgat gggctttgtc
     7021 aaagttttcg gtaaagggag taaagaacgc attgtcccat taggcgaaac ggtcattgat
     7081 tgtttaacac actacattca taatattaga cctcagttat taaagcatac ggtcacacat
     7141 gttttatttt taaatttaca tggcaaacca ctctccagac aaggcgtttg gaaaatgatt
     7201 aagcaaactg gtgtcaaagc agggattatg aagcgtttaa ccccacatac attacggcat
     7261 tcatttgcaa cacatttatt agaaaatggt gctgatttac gtgctgtaca agatatgtta
     7321 ggacattctg atatatcaac aacacagttg tatacacata ttacgaaaaa tcaaatccgt
     7381 aaaatttacc aagactatca tccaagagcg taaaatggat gggtaagaag ctaaccgttc
     7441 acacttcata cccatccatt tttttgtatt taatgataaa aatcgttcac aatcatacaa
     7501 acgaaatttt tagtacatcc caataatgat ttcaaaatca tcacagtgtt tgaaatacgt
     7561 tacccagaaa gataacagga accacccgag actcccgatg atcagttggc cattaaagac
     7621 gcctaacatg ttacatagaa gcgtcattta acaatcttgt agaatcttga tttagcctca
     7681 acaaatgagg ggcttgagat tatttccttc tttcctctaa agccgcttct cttgctgtaa
     7741 tgacgtcact tctatctctc aactgatgat gatgtaagat cattggtgtc tctaccactg
     7801 tatcagtcac ctgaaaaccc ggaaactgcg tcttaacttt cacaatcatc gttgctgtga
     7861 gggggagctg aatcggtgaa aacggaattt cttgtgcagt atcctgtatc aattgtgtta
     7921 atatatttaa ataggctttt cgtacaagtc ctaaagtggc catcgtctct tcagaataat
     7981 tgactataat ttgataagct ttgttaaatg ttttatgcgc acctttaaag ttaccacgac
     8041 gataatgata acttcctgtt gcaagcaaaa tcaaactaac gaccgcatct tgttttgaaa
     8101 aggcgtgttg cattttccat gcttcttcta aaatatcatg acagagaaaa taatgctgtt
     8161 catgatgaaa ctgatagtaa aaatggacta aatcattttc caacatggct cactccaaaa
     8221 atttattgtt atacatcaaa catgttataa tattttttgt tattatgcac attacatgcg
     8281 ttatgaaatg aggtacagat atgtacgaag tgaaactaga tgcttttaac gggcctttag
     8341 acttattatt gcatctcatc aatgaatttg aaattgatat ttatgacatc cctatgcgcg
     8401 aattaactga acaatatatg cagtacgttc acgctatgaa aaaattagag atcaatattg
     8461 caagtgagta tttattgatg gcttcagaat tactgatgat taaaagtaaa atgttgttgc
     8521 ctgatacgtc atctgattta gttgaagatg aagacccacg tgaggcgctc gttgaaaagt
     8581 taatcgaata tcaaaattac aaagcttatt cagaaatgtt agaagagaaa cgccaagcac
     8641 gtgaacatta tttcacgaaa ccaccgactg acctttcaca ttatgaatat tctgagcgcc
     8701 ttcccgaaaa tacgacgatt gatttaacga aactgatcgt cgcttatcaa aaaatgaaaa
     8761 cacgagtctc tttgaagaaa ccgactactg tggatattcg aaaagaaacg tataccatcc
     8821 aacaatcaac gacatacatt tatgataaat taaagaaagt tcctcaaatt acattttttg
     8881 atttatttac atttaatgaa tctatcgaac acgtcgtcac acattttctg gctttactcg
     8941 aaatgtcaaa aacaggcatg atacaattgc aacaagtgaa agctttccac aactttgaaa
     9001 ttagaaaagg agtaaattat gacgcttaaa gttactgaag cgctaactgc gatactgtat
     9061 acagttggtg aggatggtat tgatgaggca caactgctgg catcactcga cgtggattac
     9121 gaaacgttaa accgtgcgat cgatacactt gagttacctg ggctcatggt acaaaagttc
     9181 ggtcaaactt atgttttaac gacccaaaaa gaagcagaac cgtatatcga atcactcatc
     9241 attaataaag catctaccaa attgtcacaa gctgccatgg aagtgttagc cattatagcc
     9301 tataatcagc caatgacacg taatgatatc gaattgatac gcggaattca atctgacggt
     9361 cccgttaaaa cattgattgc taaaggattg gttgaaccta aaactaatcc cgaagcacgt
     9421 ggacaacagc tctttacaac agatttattt ttaaatgtct ttggtttgga aagtcttgag
     9481 gcactcccaa caacagatga agaagaagag gaaattgaat cgtttttcag ccaactggtg
     9541 aatcagaaag gagattctta aatgagtcaa caattagaaa gattacaaaa acgtattgcg
     9601 aacagtggtt atacctctcg acgtaaagca gaaacattaa ttgaagaggg caaagtacag
     9661 gtcaatggta aaactgtcac tgaattaggg acaaaagtac gtccatctga tgaagtgacc
     9721 gtagaaggga taccacttga gcaagaagac aaactttata tcctgttcta taaacctgcg
     9781 caagtcatta cgagcgtttc agatgatcgt ggtcgaaaag tcgttactga ttattttgat
     9841 gacttagtaa cacgtattta tccagtgggt cgtttagact atgacacatc tggactgctg
     9901 ttattaacaa atgatggtga atttacaaac ttaatgacac atccacgcta taaaattccc
     9961 aaaacgtatg ttgcaaaaat agaagggtat attttacgtg aacaagtgaa acaacttgaa
    10021 aaaggaattc aacttgaaga tggactcaca caacctgcaa aagtaaaagt gaaaaagcaa
    10081 aataaagaaa aaaatacgtc acttgttgaa attaccatta ctgaagggcg aaaccgtcaa
    10141 gtacgtcgta tgtttgaaca ttttggtttt agtgtacaaa agttatcacg cgtttcattt
    10201 ggtccgctca ctttgaaagg gctcggcgct ggagaagggc gtgtattgtc accacatgaa
    10261 gtgaaatcac ttcgtcacct tgcagagaac ggtcaacaac aacgttaact attattcaag
    10321 tcagcacgca cgtcattgtt ttattattac ccgaagaaat cattatggta taatatgctt
    10381 tgagttagaa atgtcaccat gtgtgggagg tatgtcatga tgactaatga aatcttagtc
    10441 gtagatgatg aacatcgaat tagaaaatta ttaaaattat atttagaaag agaaggttat
    10501 gtcatcgcag aagctagtga tggacgcgaa gctttagaca tggcgacaaa atatgattat
    10561 tcatgtattt tgttagattt aatgttgcct gaaatggacg gtcttgaagt tgcggttaaa
    10621 ttacgtgaac ttaaagatac gcctattatt atgctcactg caaaaggcga ggaaaataat
    10681 cgcgttgaag gttttgaatc aggtgctgat gactacatcg ttaagccatt ttcaccacgc
    10741 gaagttgtgt tgcgcgttaa agcgttatta cgtcgtacag aatcttcaaa agctgaacaa
    10801 aatgagccgc atgcccgtga tatgattgaa tttaaacatt taacgattga taatgatgca
    10861 cataaggtat tggctgatgg gacgccggtt aatcttacgc caaaagaata tgaattactc
    10921 attttcttag ctaaaacacc taataaagta tttgatagag aacaattatt aaaagaagtt
    10981 tggcattacg aattttacgg tgatttacgt actgtagata cacatgtcaa acgtttgcgt
    11041 gaaaaattaa atcgtgtttc tgcagatgca gcaaaaatga tacaaaccgt ttggggtgta
    11101 gggtataaat tcgaagttag caagtcggat gaaacgactt aataacgttg tcgtaaaact
    11161 gtggttaact attattttaa tagtaacgac agttttaatt ttattaagtg ctgcattaat
    11221 cacgtttttc caatattatt tcacgcaaga aactgaacgt gcgctctatc aaagtgctga
    11281 aaacgtaaac caagtattac ttaaaaatga taatcgaaaa ctcgccattg aacatagtga
    11341 agctttgtta gaggataata aaggcctcat tatcttaccc gaccgtgcgc atatcaatga
    11401 aaaagatact gttaaaaaga aaatgcttaa agaaattagt gagcatccaa attttgaccg
    11461 tgtactaaaa aataatcatt ctgagttaca acacgtcact tttaaaattg atggtaaaac
    11521 gcatacttat gtattactcg gttatccttc taaagataac aacggccaat cttcagcgat
    11581 atttatttat caagatttaa agagtattga tgatacgaat aacatcatta cggttatgat
    11641 tttaattaca gctgtcgttt tcctagccat tacaacggtt ttcgcatttt tcttatcaac
    11701 acgtattacg aatccactgc gtcaacttaa aacccaggcg aaagaagtcg ctcgaggaaa
    11761 ctatgacaag cgtgtaccaa ttcaaacgag agatgaaatt ggcgagctcg cgatgacttt
    11821 taacaaaatg agtcgcagta ttcaaacgca tatcgatgcg ttaacgacat ctaaaaatat
    11881 tcgtgacacc cttattaatt caatggttga aggggtatta ggtatcaatc ataaaaaaca
    11941 aattattatt tcaaacgctt tagctgaacg gatgctttca gaatttaacg aatccgaccg
    12001 cgaaatgttt aatctacaaa ttgaagatac atttgagagt caaaaaacgg aatatcgaga
    12061 atatgaaatg aatcaacgtt tttatgtgat tattatgagt catattaaaa aaattcaaac
    12121 taacggtgaa ggcggccttg ttgctatcgt acgtgatatg acaaacgaac atgagcttga
    12181 acaagtgaaa aaagacttta tcgcaagtgt ctctcacgaa ttgcgcacac cgatttcatt
    12241 attacaaggt tataccgagt cgatcgtgga tggtgtcgtc actgaaccgg aagaaatcaa
    12301 tgaatttttg acggttgtat tagacgagtc taaacgatta agtcgcttag tcaatgaatt
    12361 gttgaatgtc gcgaaaatgg atgctgaggg gttgaatgtt acgcaagaat tgcaaccgat
    12421 gcaagattta gttagaaaaa tggcgatgaa atatcgtcaa caagcacaag aactaaattt
    12481 gaccttagat tttcaaatgg acggcgagat ggcttcactt tggtactatg actttgatcg
    12541 catggaacaa gtgttgacga accttgtcga taatgcgtca cgttatacac aacccggcga
    12601 tacaatttca attaaagcaa cggcggatca tgaccatcaa attttaacta ttgaagacac
    12661 gggcgttggt atcgcacctc aacatttaga gaaacttttc gagcgttttt ataaagtgga
    12721 ctctgcacgt aaaaggggct cacaaggaac agggcttgga ttgtttatta cacgcatgat
    12781 tgtaaatgcg catggtggtc acatccgagt agaaagtgaa ctcgacaaag gaacgaaatt
    12841 tatcatttca ttacctaaaa aatcacatgt agaagaaatt gattaagcaa ggatgaattt
    12901 ctacaggaac gacgatatct cattttaaaa tcgaggtatc gccgttcttt atttatatct
    12961 tcaggatgtt taagttgttg caaatagatt gtattcaaaa gttatctcat gtaaactatt
    13021 aacgaaaata ataaaaaatt aattcatctt cggggtaggg tgtaattccc aaccggcagt
    13081 aaaataagcc tgcgacctgc aaatgatgtt cagcatcttt gtggctgatc tagtgagatt
    13141 ctagagccga cagttaaagt ctggatggga gaagatggag gtttatttgt gttgctcttt
    13201 attcctccta ttcgtgaaag atgaatttaa tgggaggtct tttttatgaa acaaaagcaa
    13261 acgaaacgaa tgataactgt agggatgtta agtgcaattg caattgtact gacatttata
    13321 aagtttccgt tgccattttt accgccatat ttaacgattg attttagtga tgcaccagca
    13381 ttattggcga catttacact cgggccggtt gcgggtttgc tcgttgaact aattaaaaac
    13441 ttactgaatt tcttttttaa cttaagtgat cctgttgggc caattgctaa ctttttagca
    13501 ggtgcgagtt tattacttgt aagttatgga atctatcgta ataatcaatc aacaaaacat
    13561 ctcattttag gattaattac tggtactatt gtcatgacca ttgtgttagc tgtcatgaat
    13621 tatttcgtgt tactcccact ctatggcatg ataatgaacc ttactgatat cgcgaataat
    13681 cttaagttga ttatcgcagc aggcattatt ccatttaaca tcatcaaagg cgcattgata
    13741 tctattattt ttatattgct ctatcaacgc attggacata ttttgaaata aatatcttaa
    13801 caggctggga cattgtggtt tccagccttt tttatagtca atgagtgaag caatagttaa
    13861 acaataaagc tgttgatgta aagaatgttc ggatatgatt tctatcaata caaagcggat
    13921 ttttattcaa aacataaaaa atagattgag tagcatggta atcaaaccat ttttctactc
    13981 aaccctcatc ttagtttact tagaccttaa gttgttttat attaatatta aagacaagtg
    14041 tcctcaatat gaactattca aatttgagtg cgtcaccatc aaatgactcc tcttcaactt
    14101 taatagagtc agtagggcaa ccttcaaaag catcttcaag atcttcatac aattcttctg
    14161 gtactggcgt tgtaccttgg ttgtcatcta aaattacata tgcaatacct tcatcgtcgt
    14221 agtcataaat atctggagca gctgcaccac atgcaccaca agctatacaa gtatccatat
    14281 caacaattgt atatttagcc attttttcgc ctcccttttc aaagtaccat actcacatta
    14341 taattttatt gtagttctgt gtacccgatt tttcaatata tacgttttta acgaggtcta
    14401 aacatgaaac aattaattct atatctctat catcatgcat cagcctacaa aactaaaaaa
    14461 agcatcttta atattatcat aggtaaaaaa tctcatcaaa ctttttttga tgctgtttct
    14521 ttaaatatat tatcactcta tggctgtgca cccaaattaa agtatgaaca gttggaacaa
    14581 atgattagtc atgagtcata ccatcatacg actattcaaa caagcaatcg tatgacgtat
    14641 tcaactttag acgctacttt taaagcattt cagctattag ttcaaacggt ttctcatatt
    14701 caacacaatc aacgtacatt tttgcctatt acatcacaag tcgacattca cgaagttgta
    14761 cgccttattt attatgaaat tgagcaacag caattacaag atgcatttga agaagaggtc
    14821 acaacattat ttaaaatgct atccgagaaa catgacacat tatatacgca ttacttattg
    14881 actggatatg acgaaccgat gtacacgttt gcccaaataa gcatgattga gtccattgat
    14941 atccatgatt tgtatactgc atattacgaa gagttattat ccatttatct tttcattcaa
    15001 aatgctgata cgtttccaat actttcacaa tgtatcatgc ctatagaatt atccgatcga
    15061 gtaatgcaaa cgttacaatt gctacaaaaa ggatattcaa tagcaaaagt cgcacaaatt
    15121 gagcaagtac gggaaacgac gataaaagat catattcttg atttgtttat gaaacagctt
    15181 ttaacaaact atgatgattt tttcacgcat ccgtataatg aatttcttaa attttatcaa
    15241 gcgcacccct atcaacgatt aaaactgtac aaagaacaat ttgacacatt atcctatttt
    15301 gaacttaaac tcgcgattat tggcagcgca aaaggagaat tacatgctta aagatgcttt
    15361 aaaacaatat tttggtttta caacattccg ccccggtcaa gaaagtatta tttcaagcgt
    15421 tctagaaggg caacatacac tcgggatttt accgaccgga agtggtaagt cgctttgtta
    15481 tcaactacca acttatatga agcaacaacc gaccttggtc atttcgccac tcatttcgtt
    15541 aatggacgat caagtgatgc agatgaaaat gcaaggagaa caccatgtcg tcgcgattca
    15601 ttcagggatg gaacaagcgg ccaaaaagcg agcgttccaa cagttaacac aagcccgatt
    15661 tatttttgtg agtcctgaat tcattttaca gccgcaccat tttcatcttt tcaaaaatat
    15721 ccgattcggc atgattgtgc ttgatgaagt acactgttta tctgaatggg gatttgattt
    15781 tagaccacac tatgccttga tcggtaaagt gatacgctat tttaacgaag ccaccatact
    15841 tgcactgaca gccactgcaa cgcgacactt gaaagatgat attcagcgtg tcattcaaaa
    15901 atcaattcat gtcattgaac actcaatgga ccgaccaaat gtggcattat ctgtaaaatt
    15961 catgttatcg tatgaagaaa aagtgaattg gttaattgat acaattgcga cgtctggtcc
    16021 taccattgtc tatgtgtctt ccaaaaaggt cagcttagat ttagcaactt caatttatga
    16081 agcagggtat ttaacgggaa tataccatgg agatctatct tatcaagagc gtcataccgt
    16141 tcaacaacag tttttaaaca acgacatacg aattatcgtt gcaacaagtg cttttggcat
    16201 gggcgtcaat aaaccagata ttcgtaccat tattcatttt cacgtttcaa cgacaccttc
    16261 aagttatcta caagaaatag gacgtgcggg tagagatggg cttccaagtc aagccattgc
    16321 actgtttcaa ccagacgacc agtatttaat ggagacgttg gcattagtga atatcatgca
    16381 tgcttcagat gtggaccaat atgaagtcgg tcaaatgatt gatagtgaaa aacgtgccat
    16441 tttagatgta ttaactgaag ctttttcatt tcaacaactt agacaaatat tcactcaaaa
    16501 tgaagacatg aaaagacaag gttatcgtca tatgtatcat tatattttaa ccaaacaatg
    16561 ccgacgtcaa catttattga attactttgg tatgacgaaa gaaaccacag atgcatgttg
    16621 tgatcaatgc gaggcactta gtccagttta tgaaaaaaat aagaaaaaag ttaaaagaaa
    16681 gttaacttac attgaaaagt tggaaaattt gtttcattaa ttttcacaat gctttcactt
    16741 ttaatttaaa cccgttataa tttagggtaa atggtattag gcgatttaac gacaacaaag
    16801 aattaaatag atgtgatgaa ttgatattga tcgtatcaaa gtttatactt tcaaatcgtt
    16861 attgtacatt tgatatggaa aggatgaatg ttaagtgtca aaagataatt tcaaagatga
    16921 gtttgaacgc agtcgtcaag aaattaagtc ccatcatcat gacgaggacg agacaactga
    16981 agcaataaat gaaaaagatg atcaacctca agcaagtcag gaacagcaat tcccgccacg
    17041 aaatgcttct agacgccaca gaaaaagaga tttcggtata tcaaaagcta aacctacaca
    17101 aaaagatacg cagactaacc cacaagaagc agcagctgac aaaaaaacag gtccgattgg
    17161 tggcgttaaa aagagtgatg acaatcacct taatcacacg caacatgacg ctgaaggcaa
    17221 acgtgcacaa acagctgatt caatgcaaaa tgaaccagcg aaagaggata cgaaaggtca
    17281 aagagctgca acatcaggcc atacagctgt tggaactggt gcaaatgttc aaatgacaaa
    17341 taataaaaag caacaaccta aagtgacaaa tgaagcacaa agcaatcaac aaggagagca
    17401 acaagaaccc cgcaaaagta aaaaagcttt ggccactggg gcaggtttag gcgcgacagg
    17461 tgtggcaaga gcgggtatgg agaaaaatga ccaaagtcca aaacaagacg aaaatccaac
    17521 tttagaagac agcaaacctc aagggaacaa aggaaaaaaa gctgcggcag gtgtgtcgac
    17581 tggcgcagca acaggtttag gcgcttcaaa agctcatgcg caacaaacac cagaacgtca
    17641 accagaaact gaatcttcag agacgactgt ttcaaatgga tctggcggtg gatttttcaa
    17701 aaagctttta ccgttactag cggcgattat tcttttaggt acagttgcga ttttcggtgg
    17761 catgtatctc tttaatcaag atcatcaaaa tgataatcag caagaagtcg cacaaaaaga
    17821 ggatacgaag aaaaattcag atgacaatca acaaagtcaa tctaaaaacg aagacgataa
    17881 acaagatgat tccgataaag cgacagcttc aaaagatagc gacgacaaca gtaaggatga
    17941 caatgatcaa tcagagtcag acgccaataa tagtgacaat tcaaatgctt cagatccaaa
    18001 tgagacatct aatccgaata atagtcaaaa cgacgtaaat aatagcaata tcaataacca
    18061 acaaaacact tatcaacaag gccaatctgc tggcggacag actcatgtcg tgaatggtaa
    18121 ccaaaactta tatcgtatcg ctattcaata ttacggtaat ggttcacctg aaaatgttga
    18181 aaaaattaaa cgtgcgaacg gtttacaaaa taacaacatt tcgaacggac aacagctcat
    18241 cattccataa atttgataaa tgcagcctta tcctgaatca atggataagg ttgtttttta
    18301 ttgccgttct atttgcaata gtgactgtca caaacttttc catttagaat cactataaaa
    18361 gttgatataa tatacaagga ttatcacagt tcttatcata tacgatgcta gtatgagaat
    18421 taggaggcaa tatgaaacat taaagtagca taattgacgt ttgtgaacgc acatttttaa
    18481 tgtttcagta taaaaatgaa aactgtagag agtattatta taggcggtgg cccatgtgga
    18541 ctgagtgccg ccattgaaca aaagaaaaaa ggtattgaca cactagttat cgaaaaaggg
    18601 aatattgtgg atgcgattta ccattatccg acacatcaaa ctttcttttc atctagcgat
    18661 aaattaagta ttggtgacgt gccttttatt gtagaagaat taaaaccacg tcgaaatcaa
    18721 gcattagtgt actatcgtga agttgttaaa catcatcaac ttaaggtcaa tgcatttgag
    18781 gaagtgttaa cagtgaaaaa aatgcatgat cacttcactt taacaacgac taaagatgta
    18841 tatcaatgtc gctatttaac tgttgcgact ggttattacg gccaacataa cacgttagaa
    18901 gtagaaggtg cagagctatc caaagtaatg cattatttta aagaaccgca tccgtatttt
    18961 gaccaagacg ttgtcatcat cggtggtaaa aactctgcag tcgatgcagc aattgagtta
    19021 gaaaaagcag gtgcacgtgt cactgttatt tatcgaggtg agacgtattc accagcgatt
    19081 aagccatgga tattaccgaa ttttgaatca ctcgttcgtc gaggtaatgt tcaaatgcat
    19141 ttcaatagtc aagtgacaaa gattacagaa gatcaagtga tgtttgaaaa agaaggagaa
    19201 accatcacaa tcgataatga ttacgtgttt gcgatgattg gttatcaccc agattatgac
    19261 tttttgcaat ctattggtat cgacattcat actaatgaat atggaacagc accggtatac
    19321 aattccgaaa cgtatgaaac gaacattgaa aactgctata tcgctggggt tatcgcggct
    19381 ggcaatgatg cgaatactat ttttatcgaa aacggtaaat atcatggtga agccattgcc
    19441 cgtcatatat tgactaaaaa gcaatcgcca ttagaatcat aaattgtatg agtgtttact
    19501 caaaatatta tcaaaaagcc tttcgtcgtt gatattactg atgaagggca tttaatttta
    19561 tatgacatga cgcattttta ttgtgtaatt ttttcaatat atcataccat ggttgtgaat
    19621 gtggagagta gctcacgcat ttcatacatt tcatatctaa aaaagaatga acacatgata
    19681 ctgtgtaaat gcacaaaaaa tagccgtatc tcaattccac aattaagagc ggctattttc
    19741 ataatgatat ctctttttta tatagacctc gtgtcgtttt atacattaaa gtaatcttga
    19801 atttgatcat gttgaaaatc gttgcttaat gcgacgagta actttaatct cgctttttgg
    19861 ccgttcaaac cgtttgaaaa aatcacacct ttttcaaata attgatgacc gccaccttca
    19921 tatgcataaa ccgcactcac tatcccatta aatgatcttg atactagaac aataggaata
    19981 tttttatcca aacatgcatt gacacctggc atggcagtag gaggaagatt accttgtccg
    20041 agcgcttcaa tcacgagacc atctacatga cgttctgcat aaaaatccaa catttcgcat
    20101 cccataccca tatgtgcttt aattaacgga atttgtagtg aagcattaat atttgttaaa
    20161 aattgacgcg catacggtct atggtgaaaa tagacacctg ctttagtaat cacaccaagc
    20221 ggaccgtggt tgggactttg aaacgtattc gtgtttgaag tatgagtttt cgtgacatta
    20281 cgcgctgtgt gtatctcatc attgaaaacc accatgacac ctttacctgc ggattcttct
    20341 tcaatcgcta ctcgtatagc tgaaataaaa ttgtataaac catctgaccc aatctcattg
    20401 gaagaacgca tagctcctgt aataacgact ggtttagacg tcgaaatcgt taagtctagt
    20461 aaaaaagcag tctcttctaa cgtatcggtg ccatgtgtaa tcacataacc atcatagtgt
    20521 gttaaatggt ctgggtcctc aatgatttct tttaaaattt tgacattatc aattgtcata
    20581 tgtggagaag ggacgttaaa aggcacctgt tcatctatgt tagcgtactg tgcaatgaca
    20641 tcttgatgat gcgtaatcgg attgtcgtca ttcgtcatca ctttattcga ttcatcttct
    20701 gacatactaa ttgtgccacc tgtatggatg actaataaat ttttcattta gcttcctcct
    20761 cgtaaaatag tccattatta tgataaaata ttgttaaaca aacgacaagg aaggtaacgt
    20821 atgaaagcga ttaatattgc attagatgga ccggcagccg ctggtaagag tacgatagca
    20881 aaaagagtag ctgctcaatt aggcatgata tatgtagata caggcgcaat gtatcgtgca
    20941 atcacatact attatttaaa taacaaagaa cgattcaccg actttacatc actcatttcc
    21001 gaaattgatt tacgcctcgg ttatgatgct gaaaagggtc aacgtgtctt tttgaatgat
    21061 aatgatgtga ctgattttct acgtgaaaac gatgtaacgc aaaatgtgtc ctatgtttcg
    21121 tctataaaag aggtacgtca atttttagtt caagtgcaac aaaaacttgc agcggacaag
    21181 ggcatcgtta tggacggccg agacattggg acaaccgtac ttcctgatgc agaagtaaaa
    21241 gtttatatga ttgcatctgt agaagagcga gctgaacgtc gttataaaga caaccaagaa
    21301 agaggtatcg aatcatctat tgagcaattg aaaaaagata ttgctgaacg agatgcatac
    21361 gatatgaaca gagaaatttc accgttaaaa aaagctgaag acgcaattga aatcgacaca
    21421 actggcttga gtattgaaca agtcacagat aagatcctgt ctttagtaaa tgcggt
//
LOCUS       DANHOL010000031        20166 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.031, whole genome shotgun sequence.
ACCESSION   DANHOL010000031 DANHOL010000000
VERSION     DANHOL010000031.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 20166)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20166)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20166
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.031"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            135..572
                     /locus_tag="PTC08_000807"
     CDS             135..572
                     /locus_tag="PTC08_000807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HDK5682329.1"
                     /translation="MSDHLNLKEQVCFSLYNAQRQVNRYYSNKIFKKYKLTYPQFLVL
                     EILWDQSPVNVKKVVTDLALDTGTVSPLLKRMEQIDLIKRERSEIDQREVFVHLTEKS
                     KAMEPELANASQQVAEASSLTPDEVNELTRLLEKVITAFDESK"
     gene            complement(958..2619)
                     /locus_tag="PTC08_000808"
     CDS             complement(958..2619)
                     /locus_tag="PTC08_000808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding/permease
                     protein"
                     /protein_id="HDK5682330.1"
                     /translation="MKLQQVINIKWDKDIVMAICIGVFGSLVALSMFFLSGYMITQSA
                     LGAPLYALMGLIVTVKLFGFIRAITKYYERLRSHRATFTMLRDVRVQLYRALIPIVPD
                     VFRKFRSSDLLGRMVTQVEALQNIYLRVYYPPIVIGITTLISAVTLVYFSWAHAVVLI
                     ITIAIALFILPALRVKQATRVRLHVNQTGARWMHAYFDYILGHDELKRFKSDKKYNAQ
                     LMASEAAFSQAEHLSQKSHLVYDYIRHLISMAALLGSIVLVVVMVEQQQVDIVYVTSI
                     ILMILTLLEQAVPMSQVADYKSETDLAQQSLSEVMGYRKRAVGKEQVDVHQISHDAPL
                     LTLKDVTLCYEHQQRPSVQHLNLHIHKGEHIAIVGTSGSGKSTLLQLLMGLYTPSEGQ
                     ILIGDHTLNDLDMIHYYQQLNTMLQQPHFYDDTVYGNLLTNASTTQCRTVLDQLHLQH
                     IALDRPVTFNRNTLSGGEFQRLALARLMLREASIWLLDEPTTALDIENTKDVMRQIHQ
                     QAETLVVATHDVQYLAQFDRIIQMKEGKVIGDMTPEQFLAEKVHE"
     gene            complement(2620..4257)
                     /locus_tag="PTC08_000809"
     CDS             complement(2620..4257)
                     /locus_tag="PTC08_000809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein/permease"
                     /protein_id="HDK5682331.1"
                     /translation="MKQLHQWAKQFYSLPIFMAIVCIGLALSVVAQNVTIGIILEHIL
                     THQPTAWSVMIGFLALVLILRATLDFVNGWLGERLAHRVRQMIRGRLLHQVSRQAVGE
                     RLTMATETLSEMLPFYRNYLPQVFKSTFIPLAIIVTMLFVHIPTALIMLVTAPFIPVF
                     YIVFGLKTRDDAKNQMTFLNQFGQRFLSLTKGLVTLKLFNRSEQAVETISEESTQFRD
                     KTMTILKSAFLSGLMLEFISMLGIGLVALEVGLSLIVFQSIHFGTAAIAMIMAPEFYN
                     AIKDLGQAFHTGKESEGASDVIHAALEKCEVVTGHEISVDENQTPLIQVRNLQYHYPN
                     TTSNVLTEMHLDIFEGDRIALVGPSGAGKSTFVRLLIGELLPQEGRITYQRQDLKIGY
                     LSQNPYIFNATIAENVAVFNDVPTEKITAALEAVQLMPVVQRFHYGIETLIGEGGEML
                     SGGEMRRIELARLLLLEPDFVVLDEPVAGLDSTTEQVIQQTLDRYFQHATRLTIAHRQ
                     STIQHATRRIYLADGTIQSDDDHIQLSLTHTQNGGEE"
     gene            4536..5390
                     /locus_tag="PTC08_000810"
     CDS             4536..5390
                     /locus_tag="PTC08_000810"
                     /EC_number="3.6.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphate phosphatase"
                     /protein_id="HDK5682332.1"
                     /translation="MLFFELIKAIILGIVEGMTEFAPVSSTGHMILVDDMWLKSTDFL
                     GPESAFTFKIVIQLGSIFAAAWIFRHKYFEMLHIGKYAPAQQPGRRSKPRRLNLLHII
                     IGMIPAGVLGLLFDDLIEKYLFSVPTVLIGLFLGAIYMIIADKFSLNVKNPKTLNEIT
                     YFQAFVIGLSQAVAMWPGFSRSGSTISTGVLMKLDHKSASDFTFIMAVPVMLAASGLS
                     IIKHLDYIELTHIPFYILGFLAAFTFGFISIKLFLKLIQNVKLLPFAIYRIVLVVVIA
                     VVYFGIIK"
     gene            5774..6763
                     /locus_tag="PTC08_000811"
     CDS             5774..6763
                     /locus_tag="PTC08_000811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682333.1"
                     /translation="MNKTIKMIVNVLPVFLVPLILERKKFKAHPDVQKVTQTTVNTSK
                     TVAHKTGQVANSVKDSVVLGSSHLKSTIQTKKRRHDYNKVMKKEAEIQRYNRPENVRA
                     RGKEIAKENRKEIDKLAKSLEKHIAERHKEEDKAFNQRQKQMIKTMKKMQKYEEKVGH
                     TPEQRDAKTEKRAEKIEKRNKKEVDKMNKDLKKHLKERHKKEEKVAKAREKALKKNMK
                     DMKKHEEKAGHTTDAAPTKRSVNQNNTVQSNEQQEKQRITTLSELQTTQSHTGKSQPT
                     PSAPGQVETTSDNAPLYEQHYQNMERQVQDSDILRQNQQLNDTSKKSMKKQGR"
     gene            6764..7210
                     /locus_tag="PTC08_000812"
     CDS             6764..7210
                     /locus_tag="PTC08_000812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YaiI/YqxD family protein"
                     /protein_id="HDK5682334.1"
                     /translation="MRILIDGDACPVVDSIVRITAETGIFVYLFRTYSHFTVHDFPSH
                     VEVKYIDGGRDAVDFMLLQHAKANDIVVTQDYGLASLVLEKVKHVLHHNGHIYTSENI
                     DRLLAQRYYHQQARRKTKRHHKGPPAFDQKQRLDFETSFRHCIQSP"
     gene            7311..7877
                     /locus_tag="PTC08_000813"
     CDS             7311..7877
                     /locus_tag="PTC08_000813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002487609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00730 family Rossman fold protein"
                     /protein_id="HDK5682335.1"
                     /translation="MQRIAVYCGASKGLDETYVKEAYALGQYFAEQGIELVFGAGSVG
                     IMGAIQDGVLDHGGHAIGVMPRLLDEREITSQKVSELILVDSMHERKQKMADLADAFV
                     IAPGGAGSLEEFFEVYSWAQIGLHQKPIGIFNIKQFYKPLEALITHMIHEGFIDQKYE
                     KLAGVYETPQTLLEGLKNAKPISTRTYD"
     gene            complement(8688..9236)
                     /locus_tag="PTC08_000814"
     CDS             complement(8688..9236)
                     /locus_tag="PTC08_000814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDK5682336.1"
                     /translation="MTVYIETNRLKLRDWQDEDLQPFQQLNANRQVRQFFPSLLSYQK
                     TALDFEAMKSYLKHHQIGLFAVELKATKEWIGFIGVNYIPQTVDYPFEELPFYEIGWR
                     LSPEVWDNGIATEGAEAVLDYVAERGISEVYAMAAKVNHASIRVMEKIGMTHYDDFDK
                     PGLSEHHVLRPQVRYRKQLKEV"
     gene            complement(9446..9745)
                     /locus_tag="PTC08_000815"
     CDS             complement(9446..9745)
                     /locus_tag="PTC08_000815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682337.1"
                     /translation="MYEKEFRLLEGRDISLVELGRELENITGYAIIDSTGELQRSIAL
                     KPNFDHDWETYTATYRLNHKNDFVDAVFTTQKGQNPERLKEVPVTIQLLSYISRA"
     gene            complement(9868..10203)
                     /locus_tag="PTC08_000816"
     CDS             complement(9868..10203)
                     /locus_tag="PTC08_000816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682338.1"
                     /translation="MKKQLIALMGTVVLLSGCGNSEKEKLQNEIKSLEDEQKELKEEN
                     KKLKDQSEKLDSQIKDLEHSIDKAKTSEDKKKTSSKNNKKPTESKKDAKSTEKSKETS
                     DTQEKSSFE"
     gene            complement(10273..10728)
                     /locus_tag="PTC08_000817"
     CDS             complement(10273..10728)
                     /locus_tag="PTC08_000817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDK5682339.1"
                     /translation="MILLTYEDSDYIHRVATEHVKLLQSDTLIRTQGTQIEIALYEEM
                     IAHRLRYAGDWLGIVTDREEHMKAYAWAHYEPANAQVTIESLYVDPEYRQQGYATELK
                     QQIEKWAKSQGARQIIGTVQQSNQAMVELNEALGYRVDKYIMSKSLEES"
     gene            10827..11510
                     /locus_tag="PTC08_000818"
     CDS             10827..11510
                     /locus_tag="PTC08_000818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1129 family protein"
                     /protein_id="HDK5682340.1"
                     /translation="MKTTNELMKENNVKSLRLNNTDRQIFESYMTYVRADMRVNAHDS
                     EKVLQRILDHLLKAENKGLHAMEFFDHHPKKHAIQTIKEMPNHTFKNICHYILQHIVF
                     LLGVFCFLKGFLGFFINDTRVFLYTFPLTFVAGIFVTFLFIWSCFKMIQLQAFDYSRL
                     AWLVGYVVLIALILLIFIIFFFPQNFLQFGPYIHISNWAFIIASFIIVPLGMLKYKND
                     DHAKSASWR"
     gene            complement(11595..12086)
                     /locus_tag="PTC08_000819"
     CDS             complement(11595..12086)
                     /locus_tag="PTC08_000819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF456 domain-containing protein"
                     /protein_id="HDK5682341.1"
                     /translation="MSDVIFWVLILAAFVLAFIGLIKPVIPAIPVLWVGFLIYQFGIN
                     GATLSWVFWTAMIVLTIFIFVSDLWLNRYFVNRFGGTKKGEWAALIGVLVGAFVLPPF
                     GVIIVPFIAVIIVEMVQSKNFAQAAKASFGSLVAFFSSAVMQAVLMFVMIVWFFIDAL
                     LIN"
     gene            complement(12108..13313)
                     /locus_tag="PTC08_000820"
     CDS             complement(12108..13313)
                     /locus_tag="PTC08_000820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001832093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar efflux transporter"
                     /protein_id="HDK5682342.1"
                     /translation="MFRELLTIKNYKLFIVNMMLIGMGIAITVPFFVLFATNQLGMTT
                     NQFGLLLALAAISQFTMNSIVARFSDTHAINRKVIIIVGLFMGAISFTLPFFVHSVVL
                     FIILYAIFQGLFAPAMPQLYASARESINQSTSSSRAVFANSVLRSMFSFGFLFGPLVG
                     NILNQSWGYSGLFGGTVAIILTTLLLQVFFFKDIKAKKPVRDSIMTEQDAPSMLKHRY
                     LIVPFIAFVLLHIGQWMYTLNMPLFVTQYLHEEEKYVGHLASLCAGLEVPFMIILGMV
                     ASKVETRTLLAIAAVCGSLFFGSIGIFESIHIMLVGQVLLAAFLAVLLGIGISYFQDV
                     LPQYPGYASTLFANAMVIGQLLGNLLGGAMSQWVGLGNVFYVSALSLACGFVLILFTK
                     KSRKTVQTV"
     gene            complement(13393..14262)
                     /locus_tag="PTC08_000821"
     CDS             complement(13393..14262)
                     /locus_tag="PTC08_000821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDK5682343.1"
                     /translation="MKIDDYRLLITLDETRTLRKAAERLYISQPAVTQRLKSIERHFG
                     VDIFIRTKKQLITTTEGAMVIAHAKSMLKQERLFQDKIKAHVGAINGTLSIGCSSLVG
                     QTVLPEVLNRYTAEFPNVEIQLQVGSSEHIKANHNDYHIMIVRGNQLLNMHNDHLMDD
                     QHYFIYPKNKETELHKLPFIEFQADPVYINQIKTWYQQHMSQDYHARIKVDQVATCKA
                     LLLSGVGVTILPEIMVKDLDTSQFAMLKVDVEEQSLVRSTYLSYDMSMVQLPQVSSFI
                     NVFKTYLHIEDIE"
     gene            complement(14351..14947)
                     /locus_tag="PTC08_000822"
     CDS             complement(14351..14947)
                     /locus_tag="PTC08_000822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016424430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF402 domain-containing protein"
                     /protein_id="HDK5682344.1"
                     /translation="MKVKYIDKRHWRRLLDHDYIEVKVNNNKFKGIIGLISIKKVRDP
                     LEVTVVNQRMVVADDGYQWLQILPEKKRYSMTVMFDDKGQPLQYYFDINLKNIIQKGR
                     ARTIDLCLDVLALPDGQYELVDQEDLERALKSNQITRKQYHEAYVIAHQLMIQIDEDF
                     ESIQKKAMYCYHKINRKYQKQEKYKQFETSNGDGFHTP"
     gene            complement(15270..15749)
                     /locus_tag="PTC08_000823"
     CDS             complement(15270..15749)
                     /locus_tag="PTC08_000823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HDK5682345.1"
                     /translation="MEAQDWVRHLELIPHPEGGYYRQTILSPDTTNERPHYSSIYFLL
                     EDKNISHFHRIDADEIWYYHAGETLTIHMIFPDHTYRDVQLGPNVAEGDVLQYVVPKG
                     TIFASSIERENAFAVVGCMVQPAFQFEHFELFTQAELLAWYPEHEEIIRKYAKVSVD"
     gene            complement(15768..16484)
                     /locus_tag="PTC08_000824"
     CDS             complement(15768..16484)
                     /locus_tag="PTC08_000824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009383182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HDK5682346.1"
                     /translation="MGRKWNNIKEKKAQKDKNTSRIYAKFGKEIYVAAKSGEPDPESN
                     QQLKFVLERAKTYSVPNHIIDRAIEKAKGGGEEDFDALRYEGFGPSGSMVIVDALTNN
                     VNRTASDVRAAFGKNGGNMGVSGSVAYMFDHTATFAFEGFDADTVLEALMENDIDVRD
                     VIEEGGLTIVYAEPDQFATVQKALAQLGVTSFEVAELEMLPQSEVQLSAEDQETFEKL
                     IDVLEELEDVQHVYHNVELA"
     gene            complement(16560..17564)
                     /locus_tag="PTC08_000825"
     CDS             complement(16560..17564)
                     /locus_tag="PTC08_000825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ThiF family adenylyltransferase"
                     /protein_id="HDK5682347.1"
                     /translation="MTRYHRQIRFQHFGEQSQRRLQQLHVFVIGAGALGSGIAEQLVR
                     SGVGKLTIVDKDVVHLSNLHRQSGYVEADAEAMKPKVFALKERLAMMNHEVTIEPLYE
                     EVTARNIEGILEELQPDIVLDGLDRFETRYLVNEATRKLDIPYIYGAVVGSQLSVFPI
                     SHDGPCLHCVMPDVPETMESCDLNGVLPPAVHLASSFVVAEVFYYLMHGDFSYQMTTS
                     DIHQGKVKKISIQSLKEADCSVCAQHQFTRLQNKQLKSTQLLCGGVFQFRLAPGQFEA
                     TISKEVTILIDNRFVKRLRLGACDMTLYQDGRLLVYGAEDIQTAQSVARQLFEQPILI
                     "
     gene            complement(17564..18331)
                     /locus_tag="PTC08_000826"
     CDS             complement(17564..18331)
                     /locus_tag="PTC08_000826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016930788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiazole synthase"
                     /protein_id="HDK5682348.1"
                     /translation="MFKIGDLTFHSRLFLGTGKFESEAIQSKAIEASETEVLTFAVRR
                     MSLYDRSLPNPLANVDLSKFTTFPNTAGAKTAEEAVRIAELAREAGVCDMIKVEVIGD
                     DDTLLPDPLETYKACEILLEKGYIVCPYISDDVVLAKRLESLGVHAVMPLASPIGTGR
                     GITNPLNLRYIIEKCEVPVIVDAGIGSAKDCAEAMELGADAILLNSAVSRAQDPVKMA
                     EAMKKGIEAGRLSYEAGRIPIRYNAVQSSPSEGLGFL"
     gene            complement(18335..18535)
                     /gene="thiS"
                     /locus_tag="PTC08_000827"
     CDS             complement(18335..18535)
                     /gene="thiS"
                     /locus_tag="PTC08_000827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfur carrier protein ThiS"
                     /protein_id="HDK5682349.1"
                     /translation="MEVFVNGEQQQFEEGTTVQDILDHFGIEAKRMAVERNAAVVKRS
                     AWATTEVQQDDRLELLEFVGGG"
     gene            complement(18536..19126)
                     /locus_tag="PTC08_000828"
     CDS             complement(18536..19126)
                     /locus_tag="PTC08_000828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HDK5682350.1"
                     /translation="MMIVITPYVVLDDWHIKRLCVIESQIAGVILRTPMNRHALKQWL
                     IQLLANGFPKSKVIIHTDVTLAMELSISNVHFKEGDHRATLLKQVQPHYQVSMSTHSA
                     AMVRDAKAQQLDFVLFGHLFPTSSKPDLPPRTQLEVDEVLAIDFPVVALGGITADTVQ
                     QISSHFTGIACMSSAFGYELQSFEKMVDYWSLKKVK"
     regulatory      complement(19204..19312)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            complement(19331..19951)
                     /locus_tag="PTC08_000829"
     CDS             complement(19331..19951)
                     /locus_tag="PTC08_000829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bax inhibitor-1/YccA family protein"
                     /protein_id="HDK5682351.1"
                     /translation="MATQNQRRSAYGKVWLFFMYYWLIFGISTYFGQFLPIAWRQPLS
                     IGLLVLILASMVFQRVRFSGPIISHIYTIVVGLLSYAAFMYTLQDLGARLFFNMVILA
                     VSGFVIFGILGYFWIKDASSLGKYLFVTLIALILASLVGWWIHSPVYYTMIAVVGLLL
                     FLLYTLYDFNRMKRGQFSPRELGFNLFINLFHIIRYVLELARIMKR"
BASE COUNT         6275 a         4257 c         3418 g         6216 t
ORIGIN      
        1 tactgcatgc tatattttaa ggatagcata gcatagattt aagtgagaac ggcttaaatc
       61 atttgattat ggacggattc ccattcgtga tagaaaaaga gaaaacggat agaatgtctg
      121 gaggagaact aattatgtct gaccatttaa acttaaaaga gcaagtatgt tttagtttgt
      181 ataacgcaca aagacaagtt aaccgctatt attcaaacaa gattttcaaa aaatataagc
      241 tcacgtatcc gcaattttta gttttagaga ttttatggga ccaatcccct gtaaatgtga
      301 aaaaagttgt aacagactta gcccttgata cagggaccgt atcaccttta ttaaaacgta
      361 tggaacaaat tgacttgatt aaaagagaac gttctgaaat cgaccaacgc gaagtatttg
      421 ttcatttaac tgagaagagt aaagcaatgg aaccagaatt agcaaatgca tctcaacaag
      481 ttgcagaagc ttcatcttta acacctgacg aagtaaacga actaactcga ttattagaaa
      541 aagtgattac agcttttgat gaaagtaagt aaacgattga aatcaatcac tacttctaag
      601 tcataagcag tgttttcgta ttgatataga tagacttgtt tcaggggaac aatatcaatt
      661 tttacacgat gaaagtattg ggggctcgtg tgattgatat ttatatctat aacgttattg
      721 atgttatgac actatattga gagcatacca ttttttgttt gactgataca accttagttt
      781 atctatacat acataatcat catttaaaag cgcttgaatg ccctccaacg acattctgag
      841 cgcttttttc acacctctca tccgatataa ccagttgttc cttgtttatt tcaacaaact
      901 tactgtcact attccacaat aacttattca ttttttatac catttgtaat gcctcgtcta
      961 ttcatgaact ttttcagcta aaaattgttc tggtgtcatg tctccaatca cttttccttc
     1021 tttcatctgt atgattctat caaactgcgc taaatattgt acatcatgtg ttgcaacgac
     1081 cagtgtttca gcttgttggt gaatttgacg cattacatct tttgtatttt ctatatctag
     1141 cgcggttgtt ggttcgtcaa gtagccaaat cgaagcctct cgtaacatga gacgcgcaag
     1201 tgctaatcgc tgaaattctc cgcctgacaa tgtatttcga ttgaatgtta ctggacgatc
     1261 taacgcaata tgttgcaagt gcaattgatc caacacagtc cgacattgag ttgttgaagc
     1321 attagtcaat aaatttccat atactgtatc gtcataaaaa tgcggctgtt gcaacatcgt
     1381 atttaactgt tgatagtaat gtatcatatc taaatcattt agtgtatgat cacctattaa
     1441 aatttgacct tcacttggtg tatacagtcc cattaacaat tgtaataacg tcgatttacc
     1501 cgaaccagac gtcccaacaa tggcgatgtg ttcaccttta tggatgtgta gatttaaatg
     1561 ttgcacactt gggcgctgtt gatgttcgta gcataacgtg acatctttca acgttaacag
     1621 tggcgcatca tgagagattt gatgaacatc tacctgctct tttccaaccg ctcttttacg
     1681 ataccccatc acttctgata agctttgctg tgctagatcc gtctcacttt tataatcagc
     1741 gacttgactc atcggcacag cttgttctaa taatgtcaaa atcattaaaa taatgctcgt
     1801 cacatagaca atatcgactt gttgttgttc gaccatcact acaacgagca cgatactacc
     1861 gagtaatgct gccatactga ttaaatgtcg tatataatca taaacgaggt gactcttttg
     1921 cgacaggtgc tcggcttggc tgaatgccgc ttcagaagcc attaattgtg cattatattt
     1981 tttatcactc ttaaatcgtt tcaactcatc atgacctaaa atgtagtcaa aataagcatg
     2041 catccagcgc gctcctgttt gattcacatg cagtcgcaca cgtgtcgcct gtttgacacg
     2101 taatgcaggc aaaatgaaca aagcaattgc gattgtaatg attaaaacga cggcatgtgc
     2161 ccatgaaaaa tagactaaag tcactgctga aataagcgtc gtgatcccaa ttacaatagg
     2221 tggataatag acacgtaaat atatattttg caatgcttcc acttgtgtga ccattctgcc
     2281 gagtaaatca ctcgagcgaa acttccgaaa aacatccggt acaattggga tgagcgcacg
     2341 gtagagctga acccgcacat ctctcaacat cgtaaaggtc gcacggtgag agcgcaaccg
     2401 ttcataatat ttcgttatag cccgtataaa cccaaataat tttaccgtta caattaagcc
     2461 cattaaagca tataacggcg cacctaaagc actttgagta atcatataac cacttaaaaa
     2521 gaacatactc agtgcaacaa ggcttccaaa tacaccgata caaatcgcca tcacaatatc
     2581 cttatcccac ttaatattaa tcacttgttg gagtttcatt tattcttcac ctccattttg
     2641 cgtatgtgtt aacgaaagtt gaatgtgatc atcatcagac tgaatcgtac catctgctaa
     2701 ataaatccgt cgtgtcgcat gctggattgt agactgacgg tgtgcaatcg ttaaacgtgt
     2761 cgcatgttga aaatagcggt ctaatgtttg ttgaatcact tgttccgttg tgctatctaa
     2821 tcctgcgaca ggctcatcta aaacgacaaa atctggttct aacaataata gtcgcgcgag
     2881 ctctattctt ctcatttcac caccagataa catttcgcca ccttcaccaa tcaacgtttc
     2941 aatgccataa tgaaatcttt ggacaacagg cattaactgt accgcttcca atgccgcagt
     3001 aattttttca gtaggaacgt cattaaatac agcgacattt tctgcaatcg ttgcattaaa
     3061 aatatacgga ttttgagaaa ggtagcctat tttcaaatct tgcctttgat acgtgatacg
     3121 gccttcttgt ggtaacagtt caccaatcaa caagcgaaca aatgtggatt tacctgcacc
     3181 acttggtccg actaatgcaa tacggtcgcc ttcaaaaatg tcgagatgca tttccgttaa
     3241 tacattagac gtcgtattgg gatagtggta ttgaaggttg cgtacttgaa tgagtggtgt
     3301 ttgattttca tccacactga tttcatgacc ggtcaccacc tcacattttt ctagtgctgc
     3361 atgaatcacg tcactagcac cttcactttc ttttcctgta tgaaaggctt gacctaagtc
     3421 tttaatcgca ttataaaatt ccggcgccat aatcatcgca atagcagctg taccgaaatg
     3481 tatcgattga aatacaatca agcttaaccc aacctctaaa gcgactaaac caatccctaa
     3541 catactgata aattccaaca ttaagccaga taaaaatgcg ctttttaata ttgtcattgt
     3601 cttatcacga aattgtgtac tttcttcact aatcgtttcc actgcttgtt cagaacggtt
     3661 aaacagtttt aaagtaacta accctttcgt caaacttaag aaacgttgac caaattgatt
     3721 taaaaatgtc atttgatttt ttgcatcatc acgtgttttc agaccaaaaa caatataaaa
     3781 aacaggaata aatggcgccg taacgagcat aattaaagcc gtgggtatat gcacaaaaag
     3841 catcgttaca ataatggcaa gagggataaa tgtcgattta aatacttgag gtaaataatt
     3901 gcgataaaac ggcaacattt cagacaaggt ttccgtcgcc atcgtcagtc tttcaccaac
     3961 agcttggcga gacacttgat gtaataagcg ccctcgaatc atctgtcgaa cacgatgtgc
     4021 cagacgttcc cctagccatc cattcacaaa atctaaagtt gcacgtaata tgagcaccaa
     4081 cgctaaaaac ccaatcatga cagaccatgc tgtaggttga tgtgtgagaa tatgttctaa
     4141 tatgatgcca atcgttacat tttgagcaac gactgatagc gcaagaccga tacaaacgat
     4201 agccataaat atgggcaagc tataaaattg tttcgcccat tgatgtaatt gtttcatctt
     4261 tgatttccgc ctccatttgt atgtgtcatt tctccatttt acatggtcgc tctatccctt
     4321 tcacgtgaaa aaattcgacg attttttgtc tgaaatcttt caattaaaga cacactggca
     4381 ccattttcaa atttatatac atgttgcaac ttctactgct caagacctat atttcaataa
     4441 atttatgtta gaaaaagaca tcttaaatga gaatatgcta tcatatgcta tgttatatta
     4501 aaatttacac aaaaatgatt aaagagggtt cttctatgtt atttttcgaa ttaattaaag
     4561 ccattattct tggtatcgtt gaagggatga ctgagttcgc tcccgtttct tcaactggac
     4621 atatgatttt agtcgatgat atgtggttga aatcgactga ttttttagga ccagaatctg
     4681 ctttcacctt taaaattgtt atccaactcg gttctatttt tgctgcggca tggatttttc
     4741 gtcacaagta tttcgaaatg ttacatatcg gtaaatatgc accagcgcaa cagcctggcc
     4801 gtcgttcaaa accgcgtcgt ttgaatctct tacacattat tattgggatg attccagcag
     4861 gggtgctcgg tctattattc gacgatttaa ttgaaaaata tttgtttagc gtaccgactg
     4921 tgctcatcgg tttattcctt ggtgcgattt acatgattat tgccgacaag ttcagtctta
     4981 acgtaaaaaa tccaaaaact ctaaatgaaa tcacttattt ccaagctttt gtcatcggtc
     5041 tttctcaagc cgttgcaatg tggccaggat tttcacgttc tggttcaacg atttcaacag
     5101 gggtattgat gaagttagac cataaatctg cttctgactt cactttcatt atggcagtgc
     5161 ctgtcatgtt agcagcaagt ggtttatcga ttattaaaca tttagattat atcgaattga
     5221 cacatattcc attctacatt ttaggtttct tagcagcttt cacattcggt tttatttcaa
     5281 tcaaactgtt cttgaaattg attcaaaacg ttaaattatt accatttgcg atttaccgaa
     5341 tcgtacttgt cgtcgtgatt gctgtcgttt atttcggtat tattaaataa ttgaaggtgc
     5401 atcaacatat gagaaagggg ttaagaccat tgcgtgtcta tccccgcttt ttttatcttt
     5461 tcaatactgc caccgagttt aacgatacat acattaatga ttcagtcatt tgcatgagaa
     5521 ctcatagtga aaaggtcatg tcgacatcag catcacactt gagtgcacct attcacagtt
     5581 ttagaaactt caaaaaaccg agttcacttt ttaaatttcc atcaaaacaa tgtacaataa
     5641 tcatacaata cgtaacgagc tcaacttatc gatttttgac gtgcgcgata gtgcaaggtc
     5701 accatttagc gtttatcgag acggctgaaa gggtaaaaaa tcataagtat actcataatt
     5761 ggaggcaacg ttcatgaata aaacaattaa aatgatagtc aatgttttac ctgtatttct
     5821 cgtaccactc atcttagaac gcaaaaaatt taaagcacat cccgatgtcc aaaaagtgac
     5881 tcaaacaaca gtgaatactt cgaaaactgt ggcacataaa accggtcaag ttgcgaattc
     5941 tgtgaaagac tctgttgttt taggatcaag tcatttaaaa agcaccattc aaactaaaaa
     6001 gcgtcgtcat gattacaata aagtgatgaa aaaagaagct gaaatccaac gttacaaccg
     6061 tcctgaaaat gtgcgtgcgc gtggaaaaga aatcgctaaa gaaaaccgta aagaaattga
     6121 caagttagcg aaaagcttag aaaagcacat tgcagaacgc cataaagaag aggataaagc
     6181 gtttaatcaa cgtcaaaagc aaatgattaa aactatgaaa aaaatgcaaa aatatgaaga
     6241 aaaagtcggg catacaccag aacaacgcga tgctaaaact gagaaacgtg ctgaaaaaat
     6301 tgaaaagcgc aacaaaaaag aagttgacaa aatgaacaag gatttaaaaa agcacctaaa
     6361 agaacgtcat aagaaagaag aaaaagttgc taaagcacgt gaaaaagcgt taaagaaaaa
     6421 tatgaaagac atgaaaaaac atgaagaaaa ggccggacat acgacagatg cagctcctac
     6481 aaaacgttcg gtaaaccaaa acaacacggt tcaatccaat gagcaacaag aaaaacaacg
     6541 tattacgacg ttatcagaac ttcaaacgac gcaaagtcat actggcaaaa gtcaaccgac
     6601 accaagtgca ccaggtcaag tcgaaacaac atcagacaac gcacctttat acgaacaaca
     6661 ttatcaaaat atggagcgcc aagtgcaaga cagcgacata ttaagacaaa accaacagtt
     6721 aaatgacaca tctaaaaaat caatgaagaa acaaggacga taaatgcgca ttttaataga
     6781 tggcgatgct tgtccagtcg tcgattccat cgttagaatc acggctgaga caggcatttt
     6841 tgtatattta tttcgcactt atagtcattt tactgttcat gattttcctt cgcatgtaga
     6901 agtcaaatat atcgatggcg gacgtgatgc tgttgatttt atgttactcc aacatgcaaa
     6961 agcgaatgat attgttgtca cacaagacta tgggttagcc agtttagtgt tagaaaaagt
     7021 caaacacgtc ttgcatcaca acggtcacat ttatacatcc gaaaatattg atcgtctgct
     7081 tgcccaacga tactatcatc aacaagcgcg tcgaaaaaca aaacgtcatc ataaagggcc
     7141 gcctgcattc gatcaaaagc aacgactcga ttttgaaaca tcttttcgcc actgtatcca
     7201 atctccatag ctgtgcatgt gtcttaacat ttcttgtttt actacacatg cacttctttt
     7261 tgctttaaac tataactaaa aattgattta aacaaggagc gatgaaaatg attcaacgta
     7321 tagcagttta ttgtggcgca agtaaaggat tggatgagac ctatgtcaaa gaagcctatg
     7381 ctttaggtca atactttgca gaacaaggga ttgagttggt tttcggtgcg ggatctgtgg
     7441 gtattatggg cgcaatacag gacggcgtat tagatcatgg cggtcatgca ataggtgtga
     7501 tgcctcgatt attagacgag cgtgaaatta cgagccaaaa agtatctgag ctgattttag
     7561 tcgattccat gcatgaacgt aaacaaaaaa tggcagacct cgccgatgca tttgttattg
     7621 ctccaggtgg tgcgggttcc cttgaagaat ttttcgaagt ttatagttgg gcacaaattg
     7681 gattgcacca aaagcctatc ggaattttta atattaaaca attttacaaa cctctagaag
     7741 cattgattac acatatgatt catgagggct ttattgatca aaagtatgaa aagcttgcag
     7801 gtgtgtatga aacgcctcaa acattattgg aaggtcttaa aaatgccaaa ccgatttcaa
     7861 cacgtacata cgattaagta tggctgcttt ttgtatatac cacagcaaaa ttacaaggga
     7921 atgagacaca aaaatttttg atgcgattga tacagaattc ttgtttaact taccctttac
     7981 ctataatttg tagttttgat tgccttcata gcttcgcgtt tcctaggggc tggtcctaca
     8041 actcactaac gcttgattaa actgttacat ttgttaatcg ttagtggata ttgggagtag
     8101 tacagaaatc tcatgtacaa caaagatgtc gtcgtactgt cccccgcaag gctgactcga
     8161 cttctcaaaa gcatgcgcct tgagaagtca gacagctcct acgataaaca gtaaccacta
     8221 ttaaagtaaa gaagtagttg cgagcagtat gcatgcattc cctcaggcgt ctcagccatc
     8281 tagtcaattt gatatcaatt acagcgaaac tgagggcaag tatatgaaat caagaaaaca
     8341 atagcatcca ttttttgtat tccattcacc ctcattttcc gactatttta aaaacattaa
     8401 tgaatcatca acctctgaat agattgcgct taatattttc tatgtagccc tttgcacgcg
     8461 ctctattttt atgttacctc tcgcctttca ttccgactgc acctcgattt aatctgttgc
     8521 ttctatacac gtaccatcgc gtatttttac ttctaatttc ttgaaaaaac ataaaaaaga
     8581 ggccgcctca gcctcacaac ttttaatatg caattcaatt tatattattg acttctttgc
     8641 acagcagctg tttcacttca tactgggcat cattaaaagt aatgcactta tacttccttc
     8701 aactgctttc tataacgcac ttgtggcctc aacacatgat gttcactcaa acccggcttg
     8761 tcgaaatcat cataatgtgt catgccaatc ttttccatca cacgaatcga tgcatggttc
     8821 actttggctg ccatcgcgta cacttcactt atgccgcgtt cagctacata atcgagtacc
     8881 gcttctgccc cttctgtcgc aatcccatta tcccaaactt caggagacag tcgccaaccg
     8941 atttcataaa atgggagctc ttcaaaagga taatctacag tttgtggaat ataattcacc
     9001 cctataaacc ctatccactc tttcgttgcc tttaactcta cagcaaacaa tccgatctga
     9061 tgatgcttta aataagattt catcgcttca aaatccaatg ctgttttttg ataacttaat
     9121 aaactcggaa aaaactggcg cacttggcga tttgcgttca attgttgaaa tggttgcaaa
     9181 tcttcatctt gccagtctct caatttcaat cgatttgtct ctatataaac tgtcattgtg
     9241 catcccccat ttaaccgtgt atccaaagaa agaagcgggt cagaaatcgc atatatgcct
     9301 tgtgatttca gcttcccgcc tcagttatgc atttgatttc tgaaattttt actgggcgct
     9361 tcttcagtca acacctttca cctttattaa acttcttgat cagatgtaac ctgcgccttc
     9421 agttgtcgat gcgatattga tgtcattacg ctctagaaat atagctcaac agttgaatcg
     9481 tgacaggtac ctcttttaat cgttctggat tttgtccttt ttgtgttgta aatacagcat
     9541 ccacaaaatc atttttatgg ttcaaacgat atgtcgccgt atacgtttcc cagtcatgat
     9601 caaaattagg tttcaatgcg atagaacgtt gcaattcacc tgtggaatca ataatggcat
     9661 atcctgtaat attctcaagt tcgcgtccaa gttcaacaag tgaaatatcg cgcccttcta
     9721 ataatctaaa ttctttttcg tacatacgat aaccctcttt tctctccgta atatatgtgt
     9781 ttttattacc ctgtccctct caacatcaaa cgcaattcat tgtgggttgg gtcaatagtg
     9841 caaaatatca aattgacatt aaatgaatca ctcaaatgag cttttctctt gcgtatcaga
     9901 cgtttctttt gatttttctg ttgatttagc atctttttta gattctgttg gtttcttgtt
     9961 gttcttgcta ctcgttttct tcttatcttc tgaagttttc gctttatcaa tagaatgttc
    10021 aagatcttta atttgactat ctaatttttc actttgatct tttaactttt tattttcttc
    10081 ttttaattct ttttgttcgt cttctaacga tttaatttca ttttgtagtt tttctttttc
    10141 actattgcca caccctgata acaatacgac cgtccccata agtgcgataa gttgtttctt
    10201 cattgttatt tctctccatt tagaatgact tacactttat tttatcatgg tttaaacaga
    10261 ttcgcataat gcttatgatt cttctaatga ttttgacata atatatttat ccacacggta
    10321 tcctaacgct tcattcagtt ccaccattgc ttgattggat tgttgtactg taccgatgat
    10381 ttgacgtgca ccttgtgatt tggcccactt ttcaatctgt tgtttcagtt cagtcgcgta
    10441 cccttgttgt cgatattcag ggtcaacata taatgattca atggtcactt gcgcatttgc
    10501 cggttcataa tgtgcccatg cataagcctt catatgttcc tctctgtctg tcacgatgcc
    10561 tagccagtct ccagcataac gcaaccgatg tgcaatcatt tcttcataaa gtgcgatttc
    10621 tatttgtgtg ccttgcgttc gtattaaagt atctgattgt aacagtttga catgctccgt
    10681 tgctacacga tgaatatagt cgctatcttc atatgtaagt aaaatcatga ctctctcctt
    10741 tcatatttta ggattgattt atctcatgaa tatcgtcata ataagtacag ttcactatga
    10801 ttgaaattag aggaggtgct tgaccgatga aaacgacgaa tgaactgatg aaagaaaata
    10861 atgttaaatc gttacggctg aacaatacgg atcgtcaaat ctttgaaagt tacatgacct
    10921 atgttcgagc ggatatgcgt gtcaatgcac atgactccga aaaagtgcta cagcgtattt
    10981 tagaccattt actcaaagcg gaaaataaag gcttgcatgc gatggaattt tttgatcatc
    11041 accctaaaaa acacgccatt caaacgatta aagagatgcc taaccatacg tttaagaata
    11101 tttgtcatta tattttacaa catatcgtct ttttgttggg cgtattctgc ttcttaaaag
    11161 ggtttttagg atttttcatt aatgatacac gcgtcttttt atacactttt ccgctcactt
    11221 ttgttgcggg aattttcgtt acttttttat tcatttggtc ttgttttaag atgatacaac
    11281 ttcaagcttt tgactattca cgtctcgctt ggttagtcgg ctatgtcgta ttgatagccc
    11341 ttattttatt aatttttatt attttctttt ttccacaaaa ctttttacaa ttcggcccgt
    11401 atatccatat tagtaattgg gcatttatta tcgcatcgtt tattatcgtt ccactgggca
    11461 tgttgaaata taaaaatgac gatcacgcaa aaagtgcatc ttggcgatag atttcaactt
    11521 gctgcatcca ttaaaaaagt caggttgatg aatggcgtaa tttaccattt attcacctga
    11581 ctatttttat tattttaatt aatcaataac gcatcaatga agaaccaaac aatcatgaca
    11641 aacatgagta ccgcttgcat gacggcgcta gagaaaaatg cgacaagtga cccaaaactt
    11701 gctttggctg cttgtgcgaa atttttagac tgcaccattt caacaataat aacagcgata
    11761 aatggcacaa tgatcacacc gaatggcggc aacacaaacg caccgacgag tacaccgatt
    11821 aaagcggccc actccccttt tttcgtgcct ccaaatcgat tcacaaaata gcggttgagc
    11881 cataagtcag atacgaaaat aaatatcgtg agtacaatca ttgcagtcca aaaaacccat
    11941 gataacgtgg caccattaat gccaaattga taaatcaaaa atcccaccca caatacggga
    12001 atagctggaa tcaccggctt gattaaaccg ataaatgcca atacgaatgc ggctaaaata
    12061 agcacccaaa aaatcacgtc tgacattatt atacgtcaac tccttattta cacagtttga
    12121 acagtttttc tacttttctt agtaaataaa attaacacaa aaccacatgc caatgatagc
    12181 gcagaaacat aaaagacatt gcctaaaccg acccactgac tcatcgcacc acctaataaa
    12241 ttccctaaca attgaccgat aaccattgca ttcgcgaaca aagtcgacgc atagcctgga
    12301 tattgcggta aaacatcttg gaaataacta ataccgatgc caagtaatac cgctaaaaat
    12361 gccgcgagta gcacttgacc aacaagcatt atgtggatac tttcaaatat tccgatacta
    12421 ccgaaaaaca aactaccaca aactgccgca atcgctaata gcgttcgtgt ttctacttta
    12481 ctagcaacca tacctaaaat gatcataaac ggcacttcta aaccggcaca caaactcgca
    12541 agatgaccga catatttttc ttcttcatgt aagtattgcg tcacaaataa aggcatattg
    12601 agcgtgtaca tccactggcc aatgtgtaac agtacgaaag caatgaacgg cacaattaaa
    12661 tagcgatgtt tcaacataga aggtgcatct tgttctgtca ttatactgtc acgcacaggc
    12721 tttttcgctt tgatgtcctt aaaaaagaac acttgtagga gtagagtcgt caaaataatg
    12781 gcgactgttc caccaaacag accactgtag ccccacgact gatttaaaat attaccaact
    12841 agtgggccga ataaaaagcc gaacgaaaac atagaacgta atacagaatt ggcaaaaacc
    12901 gcgcgactac tcgatgtaga ttgattaata gattcccttg cagaagcata aagttggggc
    12961 atagccggag cgaataaccc ttgaaaaatg gcatacaaaa taataaatag tacaaccgaa
    13021 tgtacaaaaa atggcaatgt aaaactaata gcgcccatga ataaacctac aataataatc
    13081 actttccgat tgattgcatg cgtatccgaa aaacgcgcga caatactatt catcgtaaat
    13141 tgagagattg ccgctaatgc caataacaac ccaaattgat tggtcgtcat ccccaattgg
    13201 ttcgttgcaa atagaacaaa aaatgggact gtaatcgcaa tgcccatccc aattagcatc
    13261 atattcacaa taaataactt ataattttta atcgttaaca attcacgaaa catgtatgtt
    13321 ctcccttata tacttaaaat taatattgaa tcgcatggtg ttgtgctctc ttttgctctc
    13381 catcacatgt ctttattcga tatcttcaat gtgtaaatac gtcttaaaca cattaataaa
    13441 tgaactgact tgaggtaact gtaccatact catgtcataa cttaaatacg tagaacggac
    13501 taaagattgt tcttctacgt ccacttttaa cattgcaaac tgagaggtgt ctaagtcttt
    13561 taccataatt tccggtaaaa tcgtcactcc gacgccgctt aacaacaacg ctttacatgt
    13621 cgcgacctga tccaccttaa tgcgcgcatg ataatcttgg gacatatgtt gttgatacca
    13681 tgttttaatt tgattaatat agacggggtc tgcttgaaac tcaataaaag gtagcttatg
    13741 taattcagtt tctttatttt taggatagat gaaataatgt tgatcatcca tcaaatgatc
    13801 gttgtgcata tttaacaact gattccctct cacgatcata atatggtaat cattatggtt
    13861 cgctttaata tgttcactag agccgacttg taattgaatt tcaacatttg gaaactccgc
    13921 agtgtagcga ttcaatactt ctggtaatac cgtttgaccg actaaagagg aacaaccaat
    13981 cgatagtgtc ccattaattg caccgacatg cgccttaatc ttatcttgaa atagacgctc
    14041 ttgtttcagc atcgatttcg catgcgcaat gaccatcgca ccttccgtcg tcgtaatcag
    14101 ctgttttttc gtacggataa aaatgtcaac accaaaatga cgttcaatgg atttcaaacg
    14161 ttgggtcaca gcaggttgtg aaatataaag acgttcagcc gcttttctca gtgtgcgtgt
    14221 ttcatctaaa gtaattaata accgataatc atcaattttc atcgtacagc ctcctcaaaa
    14281 ataaaagaaa cactagacaa gatatttgtc cagtgtgcag aaatcctttc acagcacaca
    14341 gtggtggttg ctacggtgtg tgaaaaccat ctccatttga tgtttcaaac tgtttgtact
    14401 tttcttgctt ttggtatttg cgattaattt tgtgataaca atacatcgcc ttcttttgaa
    14461 tactctcaaa atcctcatca atttgaatca ttaattgatg cgcaatcaca taagcttcat
    14521 gatattgttt tcgcgtaatt tgattcgatt tcaatgcacg ctctaagtct tcttggtcta
    14581 caagttcata ttggccatct ggtaaagcaa gcacatctaa acataaatcg attgtacgtg
    14641 ccctgccttt ttgtataata ttttttaaat taatatcaaa atagtattgt aaaggttgac
    14701 ctttgtcatc gaacattact gtcatgctgt aacgcttttt ctctggcagg atttgtagcc
    14761 attgatagcc atcgtcagct actaccattc gttgatttac aacagtcacc tctaaaggat
    14821 ctctcacctt tttgattgaa attaaaccta ttatgccttt aaatttatta ttattgactt
    14881 taacttcgat ataatcatgg tctaagaggc gacgccagtg acgtttgtca atatatttca
    14941 ctttcacagc caccaactcc ctttttttca ttatatataa atcgaagtag gatgtcactt
    15001 gttgcaacta gccaatcata taaaattcat agcgaatcca atcaaaaaca tgataaacac
    15061 gcactcaatc accctatttt ttactaagac gatatacacg ttttgatgca tgagattcaa
    15121 aatcaacatc gtacagttgc gtcaaatcct tggaaaagca taacttgatt caagtaacct
    15181 ttaagtttcg tttacccctt cactatcaat ggtgacaaca aaaaagaccg acaagacatc
    15241 acatctcatc agcctttcaa accgatcgat taatcgaccg aaaccttcgc atatttacga
    15301 ataatttcct catgttccgg ataccatgct aacaattccg cttgtgtaaa caactcaaaa
    15361 tgttcaaatt gaaatgcagg ttgcaccata caaccgacaa ccgcaaaggc attttcacgt
    15421 tcaatagatg acgcaaatat tgtccctttt ggcacaacat attgcaatac atccccctcc
    15481 gcgacattcg gacctaattg cacgtcacga tacgtatgat ctggaaaaat catatgaatc
    15541 gtcaacgtct cacccgcatg gtaataccaa atctcatccg catcaatacg atgaaaatgg
    15601 gaaatattct tatcctctaa cagaaaataa atgctagaat aatgcggtct ttcattcgtc
    15661 gtatccggac ttaaaatcgt ttgacgataa tagccccctt ctggatgagg gattaattct
    15721 aaatggcgca cccaatcttg tgcttccatg gcattgacct ccagtaacta tgcaagttct
    15781 acattatgat aaacgtgttg aacgtcttct aattcttcta atacatcgat taatttctca
    15841 aatgtttctt gatcttctgc tgaaagttga acttccgatt gtggtaacat ttcaagttca
    15901 gcgacttcaa atgatgtcac acctagttgt gctaacgctt tttggacagt cgcaaattga
    15961 tcaggctctg cgtatacaat cgttaaacca ccttcttcaa tgacgtcacg gacatcaata
    16021 tcattttcca ttaaagcttc aagtacagta tctgcatcaa agccttcaaa tgcaaatgtc
    16081 gctgtatggt cgaacatata agccactgaa ccagatacac ccatatttcc gccgttttta
    16141 ccgaaagctg ctctcacgtc agaggctgta cgattgacat tgttcgttaa ggcatccaca
    16201 atcaccatcg aaccactcgg accgaaacct tcatagcgaa gtgcatcgaa gtcttcctcg
    16261 ccgccacctt ttgctttttc aatcgctcta tcaataatat ggttgggtac agaataagtt
    16321 tttgcgcgtt caaggacaaa ttttaattgt tggtttgatt caggatcggg ttcacctgat
    16381 ttcgccgcca cgtaaatttc tttaccaaat ttagcgtaaa tgcgacttgt atttttatct
    16441 ttttgcgctt tcttttcttt aatattattc catttacgtc ccatgacttc catctcgctt
    16501 tcaaatactt ttttgagtac cctttattat acatgtaaaa tttagactat ggcaacattc
    16561 taaataagaa tgggttgttc aaacagttgt cgagcgacgg attgtgcggt ctgaatatcc
    16621 tctgcaccat atactaacaa acgtccatct tgatacaatg tcatgtcaca cgctccaagt
    16681 cgtaaacgtt taacgaaacg attatcaatt aaaattgtga cttctttact tatggtcgct
    16741 tcaaattgtc ctggagctaa cctgaattga aacacaccgc cacataacaa ttgcgtagac
    16801 ttaagctgtt tattttgcag acgcgtgaac tgatgctggg cacatacgga acagtctgct
    16861 tctttaagac tttgaatcga aatttttttc acttttcctt gatgaatatc actcgtcgtc
    16921 atttggtaag aaaaatcacc atgcatcaag taatagaaga cttctgccac gacaaaacta
    16981 ctcgccaaat gaacagcggg tggcaagacg ccgttaaggt cacaactttc catcgtctca
    17041 ggcacatccg gcatcacaca atgtaaacaa ggtccatcat gactgatagg aaagacactc
    17101 aactgacttc ccacgactgc accataaata taaggaatat ccaattttcg tgttgcttca
    17161 ttcactaaat atcgtgtttc aaaacgatcc aagccatcaa gtacgatatc cggttgcagt
    17221 tcctcaagaa tgccttcaat atttcgtgct gtcacttctt cgtataacgg ttctattgtg
    17281 acttcatgat tcatcatcgc gagtcgttct tttagcgcaa atactttcgg cttcatcgct
    17341 tcagcatccg cttcaacata gccactttga cggtgtaagt tagataaatg taccacatct
    17401 ttatcgacga tggtcaattt accgacacca cttcttacca attgttcagc gatgccactg
    17461 cctaaagcgc cggcaccgat gacaaagacg tgtaattgtt gcaatcgacg ttggctctgt
    17521 tctccaaaat gctggaagcg aatttgtcta tgatagcgtg tcattataaa aagcctaacc
    17581 cctcagatgg actagattgc acagcattat aacgaattgg gatacggcct gcttcgtagc
    17641 tcaaacgacc cgcttcgatt ccttttttca tcgcttcagc cattttcact ggatcttgcg
    17701 cacgagatac agctgaattg agcaaaatcg catctgcacc aagttccatc gcttcggcac
    17761 agtctttggc tgaaccaata cctgcatcta caataacggg tacctcgcac ttttcaataa
    17821 tataacggag gttcagtgga tttgtaatac cacgacctgt accgattgga gaagcaagtg
    17881 gcattaccgc atgaacacct aaactttcga gtcgcttggc taacacgaca tcatctgaaa
    17941 tatatggaca aacaatgtag cctttttcta ataaaatttc acaagctttg tacgtttcga
    18001 gtgggtcagg taataacgta tcatcatcgc caattacttc gaccttaatc atgtcacaca
    18061 cgccagcttc acgcgctaat tcggcaatac gcaccgcttc ttctgccgtt ttcgcacctg
    18121 ctgtattagg aaatgttgta aacttagata aatcgacatt cgccaatggg ttcggtaagc
    18181 ttcggtcata taaactcata cgtctgaccg caaatgtcag cacttctgtt tcggatgctt
    18241 caatggcctt agactgaatc gcttcacttt caaattttcc tgtccctaaa aataatcttg
    18301 aatgaaatgt taaatctcca attttaaaca tatgttaacc gcctcccaca aattctaaca
    18361 attctaatcg atcatcttgc tgtacttcag ttgtggccca tgcagaacgt ttcacgactg
    18421 ctgcattacg ttcgactgcc atccgtttcg cttcgatacc gaaatggtct aaaatgtctt
    18481 gtaccgttgt gccttcttca aattgttgct gctctccatt tacaaaaact tccattcatt
    18541 tcaccttctt taatgaccaa taatcaacca ttttttcaaa cgattgaagt tcatacccaa
    18601 atgcactgct catacacgcg attcctgtaa aatgagacga tatctgttgt actgtgtcag
    18661 ctgtaatgcc ccccaatgcc actaccggaa aatcaatagc taaaacttca tccacttcaa
    18721 gttgtgtgcg cggtggcaag tcaggttttg aagaggttgg aaaaaggtgt ccgaataaca
    18781 caaaatctaa ttgctgcgct tttgcgtcac gaaccatcgc tgctgaatgt gtcgacatgc
    18841 tcacttgata atgaggctgt acttgtttta ataacgtagc acggtgatct ccctctttaa
    18901 aatgcacatt ggaaatgctg agttccatcg ctaatgtcac atccgtatgg ataatcactt
    18961 tagactttgg aaagccattc gccaataact ggatgagcca ttgcttgagt gcgtgtcgat
    19021 tcatcggcgt ccgtaaaatg acacctgcaa tctgactttc aataacacag agccgtttga
    19081 tatgccagtc gtctaataca acatacggtg taatcacaat catcattgcc ttttccctct
    19141 ctttcccttc acaataaaaa aactactccc ccgttattta caacagaaaa gtagcctcat
    19201 ttgacacgaa tacagccact ttcctacgcc agtacgaact ggatcaggtt caggaatttt
    19261 gaaatcaaca tttcaatctc agccattatg aacggcactt ccagtggatt gtttgaaata
    19321 ttcaattgtt ttatcgtttc atgatacgag ctaattctaa cacataacga ataatgtgga
    19381 aaaggtttat aaataaatta aagcctaatt ctcgtggtga aaactgacct cgcttcatac
    19441 gattgaagtc ataaagtgtg tacagtaaaa atagtaataa cccgacaact gcaatcatcg
    19501 tataataaac tgggctgtga atccaccaac ctacaagact tgctaaaata agcgcgatta
    19561 atgtcacgaa taaatatttg cctaagctcg acgcatcttt aatccagaaa taaccgagaa
    19621 taccaaaaat gacgaatcca gatacggcta aaatcaccat attgaaaaat aaacgcgcac
    19681 ctaaatcttg caatgtatac ataaatgccg cataggataa taatccgacg acaatggtat
    19741 aaatgtgaga aataatcggg ccactaaagc gcacacgttg aaataccatt gatgctaaga
    19801 ttaagacgag tagtccgata gaaagtggtt gtcgccatgc tatgggcaaa aattgtccaa
    19861 aatatgttga aatcccaaaa attagccaat aatacataaa aaacaaccat actttgccgt
    19921 aagcagaacg gcgttgattt tgtgttgcca tctcatttta cctcctttcc ttctatttta
    19981 tgatatgtca cagcagaatc aaatgcagaa atgatacaac tattccattg ataaagacta
    20041 catttatatt acaaaaactt taattatctc aaaagattta caaatcaaat tttctataaa
    20101 ttggatagtg acaacattca aggacaatac gatagtaaaa ctatattttc cgcaatatta
    20161 cagatt
//
LOCUS       DANHOL010000032        20007 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.032, whole genome shotgun sequence.
ACCESSION   DANHOL010000032 DANHOL010000000
VERSION     DANHOL010000032.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 20007)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20007)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20007
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.032"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            <1..535
                     /locus_tag="PTC08_000830"
     CDS             <1..535
                     /locus_tag="PTC08_000830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016182753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Rgg/GadR/MutR family transcriptional regulator"
                     /protein_id="HDK5682352.1"
                     /translation="NSFEKTMVKSILYTMDSNIFPTNDELLQLTDYLFKVKKWGYYEI
                     ILLGNCVRTINYNSYFLLTKEMLNNHIYSSLNKTNKQLVTQLAINCLILSIDTEEFTN
                     CFYLIDEIKALLDNELNFYEQTVFLYATGYFEFKHRQSISGIEKMKQAIQILHILGED
                     KLKLRYTSHFDKLVNNK"
     gene            663..914
                     /locus_tag="PTC08_000831"
     CDS             663..914
                     /locus_tag="PTC08_000831"
                     /inference="COORDINATES: protein motif:HMM:NF024729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682353.1"
                     /translation="MIHHQNYNTRNEAMFSIVAYLLTFYNFKSVHSTLNDMSPIEFEK
                     KYATKSPSPSCTFKNQKVHDGLGQQAKHGRILFFLCPIS"
     gene            complement(1433..2800)
                     /gene="ffh"
                     /locus_tag="PTC08_000832"
     CDS             complement(1433..2800)
                     /gene="ffh"
                     /locus_tag="PTC08_000832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002457378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle protein"
                     /protein_id="HDK5682354.1"
                     /translation="MAFEGLSDRLQATMQKIKGKGKVTEADIKAMMREVRLALLEADV
                     NFKVVKNFVNTVSERALGSDVMKSLTPGQQVIKIVQEELTTLMGGDNTSITMAKKPPT
                     VVMMVGLQGAGKTTTAGKLALLMRKKYNKKPLLVAGDIYRPAAINQLQTVGKQIDIPV
                     YSEGDQVPPQQIVQNALQHAKAEHLDFVIIDTAGRLHIDEALMNELQEVKEISKPDEI
                     MLVVDAMTGQDAVNVAESFDQQLDVTGVTLTKLDGDTRGGAALSIRAVTEKPIKFVGM
                     SEKLDGLELFHPERMASRILGMGDVLSLIEKAQQDVDEEKARDLEKKMRTSSFTLEDF
                     LEQLDQVKNLGPLDDIMKMIPGMNKMKGLDKLNMSDKQIDHIKAIIQSMTPEERENPD
                     KLNVSRKRRIAAGSGRTLQEVNRLLKQFNDMKKMMKQFTGGGKGKKGKQAQLQNMLKG
                     MNLPF"
     gene            complement(2814..3149)
                     /locus_tag="PTC08_000833"
     CDS             complement(2814..3149)
                     /locus_tag="PTC08_000833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA-binding protein"
                     /protein_id="HDK5682355.1"
                     /translation="MHHDDDLIKTVRMNYLFDFYQSLLTEKQRNYLRLFYLEDYALSE
                     IAETFEVSRQAVYDNIRRTGDLVEDYEQKLGLYRRFTRRQEIFQQIRNHIHEPEHIQQ
                     YIQELEELE"
     gene            complement(3153..4352)
                     /gene="ftsY"
                     /locus_tag="PTC08_000834"
     CDS             complement(3153..4352)
                     /gene="ftsY"
                     /locus_tag="PTC08_000834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HDK5682356.1"
                     /translation="MSFFKRLKDKFAKPDNEQQLEQDLQQDAVEHQEPERTQHTAPSE
                     TVHQDNDLTSVEDEFDDGLMSIEEFEELESQKIGAKFREGLEKSRENFQNQLNNLLAH
                     YRKVDEDFFEALEEMLIQADVGFNTVMELVDELRMEAKRRNITETEDLREAIVEKIVE
                     IYQQDDEKSEEMNIEDGRLNVILMVGVNGVGKTTTIGKLAHRYQAQGKKVMLAAGDTF
                     RAGAIEQLEVWGQRVGVDVIRQGEGSDPAAVMYDAINAAKNKGVDILICDTAGRLQNK
                     QNLMNELEKVKRVISRSVPDAPHEVLLALDATTGQNALAQAKAFKEVTDVTGIVLTKL
                     DGTAKGGIVLAIRNELHIPVKYVGLGEKLDDLQPFNAESYVYGLFADMIEQNVPEVAE
                     NQPENEG"
     gene            complement(4354..7926)
                     /gene="smc"
                     /locus_tag="PTC08_000835"
     CDS             complement(4354..7926)
                     /gene="smc"
                     /locus_tag="PTC08_000835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002505738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome segregation protein SMC"
                     /protein_id="HDK5682357.1"
                     /translation="MVYLKSIDAYGFKSFAEATQIQFDKGVTAIVGPNGSGKSNITDA
                     IKWVLGEQSARSLRGSKMEDIIFSGAQHRNAQNFAEVQLKLDNSKGLLNFDATEVIVT
                     RRLYRNGDSEFYVNNERRRLKDIHELFLDSGLGKEAFSIISQGRVDEVLNAKPTDRRQ
                     IIEESAGVLKYKKRKEASLEKLSHTEDNLTRVEDILYDLEGRVEPLKEEAAIAKEYLQ
                     LSDILKESDIRVTVHDIVSHQTQIAEHDTALNELKSQQADTHHKKSQISHTMQKAKGE
                     RFEVDQQLEKVNQQLIETTEQVEKLTGQYQLIEERQKNQSQSNARIEEEQASIAQHQQ
                     QLDQDVAETEKTLSQLKEKRQQLNQHIQTLEGQLYQSDETMEEDVETLKDTYYQLMTE
                     QADINNDIRFLTKTIEEHKAKQSRIDSRLTEAYAQLKDAQQHMHDIEQRQQQKKRQMT
                     KIENDCKQIEASLSKAKSEQTEAESQLYQAYRYNDKLKARIETMKMREDDLSSFYQGV
                     KAVLKAKAQQLQGIHGAVAQQIDVPSKYTKAIETALGASMQHVIVSDEAAARQAIQFL
                     KTKKLGRATFLPLNVIKAKTLDPRVVQTAQQMTGFVTLASEAVKVDTTYKAIIDNLLG
                     RTLIVDGLKNANDMARAIQYQTRIVTLEGDVVNPGGSMTGGGTQQRQSLLGQKDELQQ
                     LQAQLETYLEKTKQLELFCQNQKSQQDTLSEQYVTAQQDFNTYKQALHDLSLEHDRYC
                     EIEQRLKNEHEEFEFEKNDGYQSDKSEATLKDKQARQVEIAEQLEQMEQQIKAMTEQR
                     KVSQAQASQLQQQLHQYKSDLAVVVERIKTQQQQLKRMEKEQQQIDAQQQKLTDQLAL
                     INSDEVNDRSTLEKIQAQITKYQDAKTRHLEQQRQLRQQRQDIEDLIESNEQALESIH
                     QKLLEIENQYQNIKSAQSRLDVLIDQALKHLNEKYHMTFEHAKSSYSLADANIDALRQ
                     KVKLTQMSIDELGHVNLNAIEQYEEVSARYTFLSEQRNDLREAKATLEQIIQEMDAEV
                     AERFSTTFHAIQDHFASVFKNLFGGGQAELILTEKDYLTAGVDIKVQPPGKKLQHLSL
                     LSGGERALSAIALLFAILKVRSAPFVILDEVEAALDEANVIRYATYLKTLSKETQFIV
                     ITHRKGTMEMCDCLYGVTMQEMGVSRLVSVNLNRIDEVLKEEQA"
     gene            complement(7930..8661)
                     /locus_tag="PTC08_000836"
     CDS             complement(7930..8661)
                     /locus_tag="PTC08_000836"
                     /EC_number="3.1.26.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease III"
                     /protein_id="HDK5682358.1"
                     /translation="MTKVRKETLIAEFQENFAKKMKALNLTYDNMSLYQQAFSHSSFI
                     NDFNMDRTEHNERLEFLGDAVLELTVSRYLFDAFPKLPEGELTKMRANIVCEPSLVVF
                     AQHINLMPLILLGKGEEKTGGRTRPSLVADVFEAFVGALYLDQGLEAVWQFAEAVIFP
                     HVKGRQLIGVVDFKTKFQEYVHQNYLGVIKYRVAKEEGPAHNKTFTSEILLNGEAVSR
                     GEGRTKKESEQKAAEQAYLLMTHKE"
     gene            complement(9556..9789)
                     /locus_tag="PTC08_000837"
     CDS             complement(9556..9789)
                     /locus_tag="PTC08_000837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002510960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HDK5682359.1"
                     /translation="MENFDKVKDIIVDRLGVDADKVTEDASFKDDLGADSLDIAELVM
                     ELEDEFGTEIPDEEAEKINTVGDAVNYINTLDK"
     gene            complement(10018..10755)
                     /gene="fabG"
                     /locus_tag="PTC08_000838"
     CDS             complement(10018..10755)
                     /gene="fabG"
                     /locus_tag="PTC08_000838"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-[acyl-carrier-protein] reductase"
                     /protein_id="HDK5682360.1"
                     /translation="MSKVALVTGASRGIGRSIALQLAEEGYNVVVNYAGNQEKAEAVV
                     EEIKNKGVESVAMQANVANGDEVKAMIKEIVKTFGSLDVLVNNAGITRDNLLMRMKEH
                     EWDDVIDTNLKGVFNCIQKATPQMLKQRAGRIINLTSVVGAVGNPGQINYVASKAGVI
                     GMTKTAARELASRNITVNAVAPGFIVSDMTDALNDDLKETMKTQIPLGRFGQDTDIAH
                     TVAFLASDKAAYITGQTIHVNGGMHME"
     gene            complement(10748..11674)
                     /gene="fabD"
                     /locus_tag="PTC08_000839"
     CDS             complement(10748..11674)
                     /gene="fabD"
                     /locus_tag="PTC08_000839"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HDK5682361.1"
                     /translation="MSKTVLMFPGQGAQKVGMAQDLYQQDEAATKILEAAAEHMPFNL
                     LETMFEDPNQVLGQTENTQPALLTHSMALYAAMGQSTADYTIGHSLGEYSSLVMSGVL
                     KFEDAVQIVRKRGELMAQAFPNGVGGMAAVLGLSFDEVKAICDQISTEDAIVEPANIN
                     APGQIVVSGHKVAVDRLVSEGKSLGAKRVMPLDVSGPFHSSMMQVIEDEFKTYINQFE
                     WHDATTPVVQNVHARPETDAETIKQQMVKQLYSPVQFIDSVQWLIDQGVDHFIEVGPN
                     KVLSGLVKKMSRDVKITSIQTLEDVKEWIGNE"
     gene            complement(11667..12653)
                     /gene="plsX"
                     /locus_tag="PTC08_000840"
     CDS             complement(11667..12653)
                     /gene="plsX"
                     /locus_tag="PTC08_000840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase PlsX"
                     /protein_id="HDK5682362.1"
                     /translation="MVKLAVDMMGGDDAPHIVIEAVEKAVQDFDDLEIILFGDEKQCH
                     LNHPRVEIRHTTEEISMEDEPVRAIKRKKDSSMVRMAEAVKNGEADGCVSAGNTGALM
                     SAGLFIVGRLPGVARPALVVTLPTVSGKGVVFLDVGANADAKADHLYQNAVLGHIYAQ
                     KLRDIAEPRVALLNIGTEDKKGNSLTKEAFRLMSETDQFKFTGNIEAKSIMEDEADVI
                     VTDGFTGNIVLKNLEGTAKSFGKILKNDLLSSLKNKLAALVLKNDIKRIAKQLDYSEY
                     GGSVLLGLDGIVVKAHGSSNAKAFYSAIRQAKIAGETKIVENMRAKVGDTDE"
     gene            complement(12655..13215)
                     /gene="fapR"
                     /locus_tag="PTC08_000841"
     CDS             complement(12655..13215)
                     /gene="fapR"
                     /locus_tag="PTC08_000841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011275971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription factor FapR"
                     /protein_id="HDK5682363.1"
                     /translation="MKKTKDERRTLIETTIQQNPFITDQALSDMFEVSIQTIRLDRSQ
                     LQIPELRERVKNVAKDQYQNISALEDQDIIGDIVSLEPNLSGKSIMTISKKDVFTRNA
                     IARGHVLFAQANSLCVAIVKHASVLTKESHIHFVKPVQLGDVVVAEAEVQFHDDKYYE
                     MSVTSFVAQEKVFEGLFKMYYISEDE"
     gene            complement(13342..15387)
                     /gene="recG"
                     /locus_tag="PTC08_000842"
     CDS             complement(13342..15387)
                     /gene="recG"
                     /locus_tag="PTC08_000842"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HDK5682364.1"
                     /translation="MTKLNLIENPYALKDIKGLGPKRLAILNEMNIHTIQDLVLYLPT
                     RYEDNTLVDLTTAEDESHVTVRGEVYSTPTVAFFGRNRSKLTVHLMINGIAVKAVFFN
                     QPYLKNKIQLHETVVIKGKWSRRKQEINGQKMFFDLSQLADAQFTPVYRVKEGLKQKT
                     LRDMIQQTLQDITIHEWLPASMREQYKLETLHDTIHALHEAKDQQSLLRARRTFAFTE
                     FFMFELRMQWLNRMEKMSEEAIEVQYDIQQVKTFIETLPFELTEGQKQSVNEIFRDLK
                     APIRMHRLLQGDVGSGKTVVAAICMYAMKTAGYQSALMVPTEILAEQHAESLVELFGP
                     YMNVALLTGSVKGKKRQLLLERLANGEIDCLIGTHALIQDDVAFHNVGLVITDEQHRF
                     GVQQRQKLREKGALSNVLFMTATPIPRTLAISVFGEMDVSSIKSLPKGRKPIETYWVK
                     HEQYAQVIEHMERELRQGRQAYVISPLIESSEHLEDVQNAIALYENLQVALPQRRIGL
                     LHGKMSADEKDDVMHRYSAHELDVLVATTVVEVGVNVPNATFMMIYDADRFGLSTLHQ
                     LRGRVGRSDFQSYCVLIASPKTETGIERMQIMTQTTDGFELSEKDLEMRGPGDFFGVK
                     QSGLPDFLVGNLVEDYRMLEVARDEAAQLMQSGVFFTNEFERLRTFIEDKVLYQSFD"
     gene            complement(15390..16259)
                     /gene="sdaAA"
                     /locus_tag="PTC08_000843"
     CDS             complement(15390..16259)
                     /gene="sdaAA"
                     /locus_tag="PTC08_000843"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002507890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase, iron-sulfur-dependent,
                     subunit alpha"
                     /protein_id="HDK5682365.1"
                     /translation="MFKSVKELIERCEAENKAIYEVMLEQEMAVTGMTAEEVYTHMDR
                     NLQTMENALEEGLAGVTSKTGLTGGDAVLMKQYIESGQALAGNLVLDAVSKAVATNEV
                     NAAMGKICATPTAGSAGVVPGVLFSLKNRLQLNRQDMLNFLLTSGAFGFVVANNASIS
                     GAAGGCQAEVGSASAMAAAAIVEAAGGSPQQSAEGFAICLKNMLGLVCDPVAGLVEVP
                     CVKRNAAGASNAIVSADMALAGITSRIPTDEVIDAMYKIGQTMPSALRETGRGGLAGT
                     PTGQRLKQQIFGD"
     gene            complement(16278..16943)
                     /gene="sdaAB"
                     /locus_tag="PTC08_000844"
     CDS             complement(16278..16943)
                     /gene="sdaAB"
                     /locus_tag="PTC08_000844"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase, iron-sulfur-dependent
                     subunit beta"
                     /protein_id="HDK5682366.1"
                     /translation="MKYKSVFDIIGPTMVGPSSSHTAGAVRIGLVARDLFGKQPERAD
                     IYLYGSFMETYKGHGTDVALVGGLLGYDTDDDRIVTSLETAKEAGMRIHFIEMSEERS
                     HPNTAIIDMTDGVKNISVEGVSIGGGKIEIVAINGFPLAISGNYPTLLVFHQDTFGTI
                     GKVANILGDDGINVGSMQVSRKEKGDQALMTCELDDEVNDKILDAIRQVPGVVTVSLM
                     GDN"
     gene            complement(17917..19581)
                     /gene="fakA"
                     /locus_tag="PTC08_000845"
     CDS             complement(17917..19581)
                     /gene="fakA"
                     /locus_tag="PTC08_000845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid kinase catalytic subunit FakA"
                     /protein_id="HDK5682367.1"
                     /translation="MITKINGNLFADMIIQGAQNLSNNADMVDALNVYPVPDGDTGTN
                     MNLSMTSGREEVQAHLTAHIGNLGKAFSKGLLMGARGNSGVILSQIFRGFSKALEDKE
                     EIDVKQFAESFEAGVKTAYKAVMKPVEGTILTVAKDAGAAAVKKAQETDDCLEVMAYV
                     YEEAQKSLENTPNLLPVLKEVGVVDSGGKGLTLVYEGFLKAMKGEKIVAEAPKVDREA
                     FFNDEHDFHGVIDTDDIVYGYCTEMMVRFEADKAPFDEADFRQEMSQFGDSLLVISDD
                     EIVKVHVHTETPGEVFSFGQKYGELIKVKAENMREQHREVLRKEAAHQSKTKNTNDTT
                     QTVETAVITISMGDGITKLFKSMGATHVISGGQTMNPSTEDIVKVINDSGCKRAIILP
                     NNKNIQMASQQAADIVEVETIIIPTRTVPQGIAAMFHYDESADLATNEEAMTAAIDDI
                     QSGAMTYAVRDTKIDGIEIEKGAFMGLVEDKIIASDRDKQTVLKDTLNHMLSEDSEIL
                     TIITGEEAESELTDWIETFVGEHYEDVEVEVQDGQQPIYPYLFAVE"
     gene            complement(19594..19968)
                     /locus_tag="PTC08_000846"
     CDS             complement(19594..19968)
                     /locus_tag="PTC08_000846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp23/Gls24 family envelope stress response
                     protein"
                     /protein_id="HDK5682368.1"
                     /translation="MALEITNDYGSIDISNEVIASIVGGKAVECYGIVGMASRQQVRD
                     GIAEILGHENYAKGIVVREDNGVLDVDMHIIVSYGVKISEVAQNVQSTVKYTLENTLK
                     LKVNSVNIFVQGVRFNNDGKDK"
BASE COUNT         5350 a         4505 c         3396 g         6756 t
ORIGIN      
        1 aaattctttt gaaaaaacaa tggtaaaatc aattctttac acgatggatt caaatatctt
       61 tccaacgaac gacgaattgc tccaactaac agattatctc tttaaagtta aaaaatgggg
      121 gtattatgaa atcattttgt taggcaactg tgtgcgaaca attaactaca actcatactt
      181 tctattgacg aaagaaatgt taaacaatca catatactct tcattgaaca aaaccaataa
      241 acaacttgtc actcaacttg ctataaattg tttaatcctt agcatagata cggaagaatt
      301 tactaattgc ttctatttaa ttgatgagat aaaagctttg ttagataacg aattaaactt
      361 ttatgaacag acagtttttc tctatgcaac tggttacttc gaatttaagc atcgccaatc
      421 aattagcgga attgaaaaaa tgaaacaagc tatacaaata cttcatattt taggagaaga
      481 caagttaaaa ttacgttata ctagccattt tgataaactg gtaaacaata aataaacgaa
      541 atgattatct actatttata tttcatcctt tctggtgtca atagcgattt gaaaatgtcg
      601 tttattcgcg gtttaagaat gacgtatgta tagcatcttt tcatagcatc atcaaaaagg
      661 aattgataca tcatcagaac tataatacca ggaatgaagc gatgtttagc attgtggcat
      721 atctccttac tttttacaat tttaaaagcg tgcattcaac gttaaatgat atgagcccca
      781 ttgaatttga gaagaaatac gcaacaaaat cacctagccc atcatgtact tttaaaaatc
      841 aaaaagtaca tgatgggcta ggacagcaag cgaagcacgg tagaatcctc ttttttctgt
      901 gtccgatttc ttgacataga tcaatacatg cttatttaag cacaattgta catatttatc
      961 ttgacgttta tatattatcc atacatgtct aacaactcgc tcccctgttt tttcattccg
     1021 acaatctcac accaggttgt gaactcaggc gaggctcttg agggatagac ttcaatacaa
     1081 atgcatgtct ttaaaccttg aaagtggtta atggttttcg cagtagctgt ctgacttctc
     1141 aatacgcttg cttttgagaa gcctagtcag ccttgcgggg gcagtacaac gaaatctttg
     1201 ttacacatga tattactgta ctgctcccaa aatccaattc ggtttcatta caatgttcac
     1261 ctcaatcaag ccgaatttag ttgaggcaag tcccctaaga acgcgagcct taaggttcac
     1321 agcctgaaag attcctgcta aaatcaatgt aactgaaatg tcaaaaactc cgcaaaaagc
     1381 cgcaaaaaaa acaccgagat gcttcacaca cctcgatgtt tctatactga aattaaaatg
     1441 gcaaattcat accttttaac atattttgca attgcgcttg cttgcctttt ttacctttac
     1501 cgccacctgt aaactgcttc atcatcttct tcatatcatt aaactgcttc aataaacggt
     1561 ttacttcttg caatgtgcgc cctgaacctg ccgcaatacg acgttttctt gaaacattca
     1621 atttatctgg gttttcgcgt tcttcaggtg tcatggattg aataatcgcc ttaatatgat
     1681 caatttgttt gtcgctcata ttgagtttgt cgagcccttt catcttgttc atacctggaa
     1741 tcattttcat aatgtcatct agaggtccaa gatttttcac ttgatcgagt tgttctaaaa
     1801 agtcttctaa tgtaaatgaa gaagtacgca tttttttctc taaatctctt gctttttctt
     1861 catcgacatc ttgttgtgct ttttcgatca gactcaatac atcacccata cctaaaatac
     1921 gtgatgccat acgttctggg tggaacaact ctaaaccatc taacttttca ctcataccta
     1981 caaatttgat aggtttttct gtgacggcac ggatagaaag tgctgcaccc ccacgtgtgt
     2041 ccccatctaa tttcgttaat gtcacacctg tgacgtcgag ctgttggtca aacgattctg
     2101 caacattgac tgcatcttga cctgtcatgg catcaaccac gagcatgatt tcgtcaggct
     2161 tcgaaatttc tttgacttct tgtaattcgt tcatcaatgc ttcgtcaatg tgtaaacgac
     2221 ctgctgtatc gataatgaca aagtctaaat gttcagcttt ggcatgttgt aacgcgtttt
     2281 ggacgatttg ttgtggtggc acttgatcgc cttcgctata tacagggatg tcaatttgtt
     2341 tcccaactgt ttgtaattgg ttaatcgctg ctggacggta gatgtcacct gctacgagta
     2401 acggcttttt gttatacttt ttgcgcatga gcaatgcaag tttccctgct gttgtcgttt
     2461 taccagcacc ttgcaagccg accatcatga caacggtagg cggttttttc gccatcgtaa
     2521 tcgacgtgtt gtcgccaccc attaatgttg tcagttcttc ttgtacgatt ttgatgactt
     2581 gttgccctgg tgttaatgac ttcatcacat cagatcctaa tgcacgttct gaaactgtgt
     2641 tgacaaagtt tttaacgact ttaaagttaa cgtccgcttc gagtaaagca agacgtactt
     2701 cacgcatcat tgctttgata tcagcttcag tcactttacc tttacctttt attttctgca
     2761 ttgttgcttg cagtcgatcg gataatcctt caaaagccat aaagtgaccc tccttattct
     2821 agttcttcaa gttcttggat atattgttga atgtgttctg gttcatgaat atggtttcgt
     2881 atttgttgaa aaatctcttg tctgcgggta aaacggcgat aaagtcctaa cttttgttcg
     2941 taatcctcta ctaaatcacc agttcttctt atgttatcat acaccgcttg acgactcact
     3001 tcaaatgtct ctgcaatttc actgagcgca tagtcttcta agtaaaaaag acgtaaatag
     3061 ttacgctgtt tttcagtgag tagtgactga taaaagtcaa aaagataatt cattcggacg
     3121 gttttaatta aatcatcgtc atggtgcatc gtctatccct cattttcagg ttgattttcc
     3181 gctacttctg gtacattttg ttcaatcata tctgcaaata aaccgtaaac ataactttct
     3241 gcgttgaacg gttgtaagtc atccagtttt tcacctaagc caacgtattt cactggaatg
     3301 tgcaattcat ttcggatggc gaggacgata ccgcctttag ctgttccatc aagtttcgtt
     3361 aagacgatac ctgtcacgtc tgtcacttct ttaaatgctt tcgcttgtgc caatgcattt
     3421 tgtcctgttg tcgcgtcgag tgccagtaat acttcgtgag gtgcatcagg tactgaacgg
     3481 ctaatgacac gtttcacttt ttcaagttcg ttcattaagt tttgtttatt ttgtaaacga
     3541 cccgctgtat cacaaattaa aatgtcgaca cctttatttt tcgcagcgtt gatcgcatcg
     3601 tacatgacag cggctgggtc agaaccttca ccttggcgaa tgacatcaac accaacacgt
     3661 tgcccccata cttcaagttg ctcaatcgca cctgcacgga atgtatctcc agcagctaac
     3721 atcacttttt taccttgtgc ttgatagcgg tgtgcaagtt taccgatagt tgtcgtttta
     3781 ccaacaccat tcacacccac cattaaaatg acattcaagc ggccgtcttc aatattcatc
     3841 tcttctgact tttcatcgtc ttgttgataa atttctacaa ttttttcgac gattgcttca
     3901 cgcaaatctt ctgtttcagt aatattgcga cgttttgctt ccatgcgtaa ttcatcgacc
     3961 agttccatca ctgtattgaa accgacgtcg gcttggatta acatttcttc taatgcttca
     4021 aagaaatctt cgtcgacttt acgataatgt gctaataaat tgtttaattg attttggaag
     4081 ttttcacgtg atttttcgag tccttcacgg aatttcgcac caattttttg tgattcgagc
     4141 tcttcaaatt cctcaatcga catcaagcca tcatcaaatt catcttcaac cgaagttaaa
     4201 tcattgtctt gatggacagt ttcactagga gcagtatgtt gtgtgcgttc aggttcctgg
     4261 tgttcaacgg catcttgttg caaatcttgt tcgagttgtt gttcattatc aggtttcgca
     4321 aatttatcct ttaatcgttt aaaaaagctc atattatgct tgttcctcct tcaatacttc
     4381 atctatccta tttaaattca cacttacgag tcgtgacacg cccatttctt gcatggtcac
     4441 gccgtaaaga caatcacaca tttccattgt acctttacgg tgggtaatga caatgaattg
     4501 cgtctctttc gacaatgttt tcaagtaggt cgcatatcga atgacgttcg cctcatccag
     4561 tgctgcttcg acctcatcca atataacaaa cggtgcggac cttactttca atattgcaaa
     4621 cagtaaggcg atggcactta acgcacgttc gcctccactt aataacgaca agtgctgtaa
     4681 ctttttacct gggggttgga ctttaatatc aacaccagct gttaagtaat ctttttccgt
     4741 caatatgagt tccgcttgac cgccaccgaa taaatttttg aacacgcttg caaagtggtc
     4801 ttggatcgca tggaatgtcg tactgaaacg ttccgccact tctgcgtcca tttcttgaat
     4861 aatttgttct aacgtcgctt tggcttctct taaatcattg cgttgctccg ataagaatgt
     4921 ataacgtgca gacacttctt catattgctc aatcgcattc aaattcacat ggcctaattc
     4981 atcaatcgac atttgtgtaa gcttcacttt ttggcgtaat gcatcaatat tcgcatcggc
     5041 taacgaataa gacgatttcg catgttcgaa tgtcatatga tatttttcat tcaaatgttt
     5101 caacgcttga tcaatgagga catctagcct tgattgtgca gacttgatat tttgatactg
     5161 gttttcaatt tctaacaatt tttgatgaat ggactctaac gcttgttcat tcgattcaat
     5221 caagtcttca atatcttgac gctgttgtcg taattgtcgc tgttgttcga gatgacgtgt
     5281 tttagcgtct tgatattttg taatttgtgc ttgaattttt tcaagtgtcg aacggtcatt
     5341 gacttcatct gaattaatca atgccaattg atccgttagt ttttgttgtt gtgcatcgat
     5401 ttgttgttgt tctttttcca tacgtttgag ctgttgttgt tgtgtcttga tacgttcaac
     5461 gacgacagcg agatcagact tgtattgatg aagttgttgt tgtaattgtg atgcttgtgc
     5521 ttgagacact ttgcgctgtt ctgtcattgc tttaatttgt tgctccattt gttcgagctg
     5581 ttccgcaatt tcaacttggc gcgcttgttt atcttttaat gtcgcttcac ttttatcact
     5641 ttgataccca tcattttttt caaactcaaa ctcttcatgt tcatttttta aacgttgttc
     5701 gatttcacaa taacgatcat gttctaatga caaatcgtga agtgcttgtt tatacgtgtt
     5761 gaaatcttgt tgtgctgtga catattgttc actcaacgta tcttgttgtg atttttgatt
     5821 ttgacaaaac agttccaatt gcttcgtctt ttcgagatat gtctctaact gggcttgcag
     5881 ttgttgcagt tcatcttttt gtccgagtag gctttgacgt tgttgtgtac cgcccccagt
     5941 cattgaacca cctggattaa cgacatcacc ttctaatgtg acgatgcgcg tttgatattg
     6001 aatcgcgcgg gccatgtcat tcgcattttt caagccatct acaattaaag tacggcctaa
     6061 taaattgtcg ataatcgctt tgtatgtcgt atcaactttt accgcttcac tagcgagcgt
     6121 cacaaatccc gtcatttgtt gggctgtttg gacgacgcgt gggtctaatg tttttgcttt
     6181 aatgacgttc aacggtaaaa atgtggcgcg ccctaacttt ttcgttttca aaaattgaat
     6241 cgcttggcgg gctgctgctt catcagatac gatgacatgt tgcatgctcg cacctaaagc
     6301 cgtttcgatc gctttcgtat attttgaagg gacatcgatt tgttgtgcta ctgcaccatg
     6361 aatcccttgt aattgttgag ctttcgcttt taaaactgct ttaacacctt gataaaagct
     6421 actcaaatcg tcttctctca ttttcatcgt ttcaatgcgt gctttcaact tatcattgta
     6481 acggtaagct tgatacagtt gtgattctgc ctcggtttgt tcagatttcg cttttgataa
     6541 tgatgcctca atttgtttgc aatcattttc gatttttgtc atttgccgct ttttttgttg
     6601 ttgacgttgc tcgatgtcgt gcatatgttg ttgggcatct tttaactgcg catatgcttc
     6661 agtcaatcta gaatcgatac gagattgttt cgctttatgt tcttcaatcg ttttcgtcaa
     6721 aaatcgaatg tcattgttaa tatccgcttg ttcagtcatt aattgataat acgtatcttt
     6781 taacgtctca acatcttctt ccatcgtttc gtcagactga tacaattgtc cttcgagcgt
     6841 ttgaatgtgt tgatttaatt gttggcgctt ttcttttaat tgactcagtg ttttttcagt
     6901 ttccgccaca tcttgatcta attgttgctg atgttgtgca atagacgctt gttcttcttc
     6961 aatacgcgca ttagattgtg attgattctt ttgacgctct tcaatcaatt gatattgccc
     7021 tgtcaacttc tccacttgtt ctgtcgtttc aatcagttgt tggttgactt tttctaattg
     7081 ctgatcgact tcaaaacgtt caccttttgc cttttgcatc gtatgtgaga tttgcgactt
     7141 tttatgatgc gtatcggctt gctgactctt taattcattc aatgccgtgt catgttccgc
     7201 aatttgcgtt tgatgcgaca cgatgtcatg caccgttaca cgaatatcac tttcttttaa
     7261 aatgtcactc aactgcaaat actctttcgc aatcgccgct tcttctttta acggttccac
     7321 acgaccttct aaatcgtaca aaatgtcttc cacacgcgtt aaattgtctt cggtatggga
     7381 caacttttct aatgatgctt ctttgcgctt tttatatttc aatactcctg cagactcttc
     7441 aataatttga cggcgatcag tcggtttcgc gttgagcact tcatcgacac ggccttgtga
     7501 aataatgctg aacgcttctt taccgagtcc agaatctaaa aagagctcat gtatatcttt
     7561 cagacgacga cgttcattat tgacataaaa ttcactgtca ccattccggt aaaggcgtct
     7621 cgttacaata acttctgtcg catcaaaatt caacaaaccc ttgctattat cgagtttcaa
     7681 ctgcacttca gcaaagtttt gagcattgcg atgctgtgca ccagaaaaga taatgtcttc
     7741 cattttactg ccacgcaatg aacgcgcgga ttgttcaccg agcacccatt taatcgcatc
     7801 agtaatgtta ctcttcccac taccatttgg cccaacgatg gcagtgacac ctttgtcaaa
     7861 ttgaatttga gtggcttccg caaatgattt aaatccgtat gcatcaattg actttaaata
     7921 aaccatattc tactccttat gcgtcatcaa taagtatgct tgttcggctg ctttttgttc
     7981 agactctttt ttcgtacgac cttcacctcg agagacggct tccccattta ataagatttc
     8041 ggaggtgaac gttttgttgt gtgcaggtcc ctcttctttt gcaacccgat acttaatcac
     8101 acctaaatag ttttgatgaa catattcttg aaattttgtt ttaaaatcga cgacaccaat
     8161 cagttggcgt cctttaacgt gtgggaaaat gactgcttct gcaaattgcc acactgcttc
     8221 aagcccttgg tctaaataca gtgcaccaac aaatgcttca aagacatccg caactaacga
     8281 tggacgtgtt ctcccgcctg ttttttcttc tcctttaccg agcaagataa gcggcattaa
     8341 attgatatgt tgcgcgaaaa caacgagcga gggttcacaa acgatattcg cacgcatttt
     8401 cgtcaattct ccttcaggca acttagggaa tgcatcgaat aaataacgcg atacagttaa
     8461 ttcaagtacc gcatctccta aaaactctaa ccgttcatta tgttcagtac ggtccatgtt
     8521 aaagtcatta ataaaactag aatgtgaaaa agcttgttga tacagtgaca tattatcata
     8581 cgtcaaattc agtgctttca tttttttcgc aaaattctct tgaaactcag cgatgagcgt
     8641 ttccttacgc acttttgtca tgccatcatt tcctccttta tttctttcaa tcagatgcat
     8701 ggacattttc aatttgatta tccgaccatc ctcagttgca tatcacattg ttaacacgca
     8761 catgggatac tacaaactgt gacgaccgct atagttgaat acgctctcaa acttttagtg
     8821 agcacatcac attgtcatcg tgttcaataa aagtgagacc catcttttca aaatccatac
     8881 ccattaccat tatacgtgat atccaaaccg aaacctatcc attcactaaa acttctcata
     8941 gtttaaactt catatcagga taggattggg atataaaaaa ttggatgcta ttgatgcaat
     9001 atttttgtta aacttccctt cctatgattt atgactttag attgccttca tggcttcgca
     9061 ttcctagggg ctagccctac aactaactca cgcttgatta aactattaca tttgatgagg
     9121 cgttagtgga ttttgggagc agtacagaaa tctcatgtgt aacaaagagt tcgtcgtact
     9181 gcccccgaaa gactgactag acttctcaaa agggaacgca ttgagaagtc agacagctac
     9241 tgcgataaat agtacccact aaataaatat cagaaatcat atttaagtct ttgattcatc
     9301 ccctcaggag tctcagcctt ctgagcaatc ttaaatcaaa tatcgtgaac tgaaagcaag
     9361 tttatgaagt caagaaaaca atagcatcaa tttttatccc attcaccctc attttccgac
     9421 cgtattaaag tcattaatga atcagcaatc tatgtatggc ttgaggctta atttttccaa
     9481 gccctattcc tcggtataca cagcaaaata tagtaaagga gctgaggaaa cttaatgtcc
     9541 cagctccgat aatcattatt tgtcaagtgt attaatgtaa ttaacagcgt ctcccactgt
     9601 gttgattttt tcggcttctt catctggaat ttcagtaccg aattcatctt ctaattccat
     9661 tactaactct gcgatatcaa gtgaatcagc gcctagatcg tctttgaaag atgcatcttc
     9721 agtgactttg tcagcgtcta cgcctaaacg gtcaacaatg atgtctttta ctttatcgaa
     9781 gttttccacg ttgtttcacc tccttataaa ataatgcttt gtttatgtaa cgcatgttgc
     9841 gcgttttttt atcgaattga agtactcgac tgttatattt tgccatttta tcgacttaaa
     9901 tacaacccat ttcaatgaag ttcaccgcgt tctacataca tttcattaac atcttatgtg
     9961 cgttgaacaa aaatctctgt tttcactcaa gatttcataa tcgatacgct gtcatgatta
    10021 ttccatgtgc atgccaccat tgacatgaat cgtttggcca gtaatatatg ctgctttatc
    10081 tgaagctaaa aatgctactg tatgcgcgat gtctgtatct tgaccgaaac gacctaatgg
    10141 aatttgtgtt ttcatcgtct ctttcaagtc atcgtttaac gcatcagtca tatctgaaac
    10201 gataaagcct ggcgcaacag cgttgacagt aatgttacgt gatgccaatt cgcgcgctgc
    10261 agttttcgtc atgccaataa cgcctgcttt agacgccaca tagttaattt gacctgggtt
    10321 cccaactgca ccaacaacac ttgttaagtt gataatgcgt ccagcacgtt gtttcaacat
    10381 ttgtggcgtt gctttttgga tacagttaaa gacacctttt aagtttgtat caatcacatc
    10441 atcccactca tgttctttca ttctcatgag taagttgtct ctcgtaatac ctgcgttgtt
    10501 cacaagcacg tcaagtgaac cgaaagtttt gacgatttct ttaatcatgg ctttcacttc
    10561 atcaccattt gcaacatttg cttgcatagc aacactttcg acacctttat ttttaatttc
    10621 ttcaacaaca gcctctgctt tttcttggtt acccgcgtag ttaacgacaa cattgtatcc
    10681 ttcttcagca agttgtaagg caatactacg gccaattcca cgtgaagcac ctgtcactaa
    10741 tgcaacttta ctcatttcca atccattcct ttacatcttc gagcgtttga atcgaagtta
    10801 tttttacatc tctactcatt tttttaacta aacctgataa tactttgttc ggaccgactt
    10861 caatgaaatg atccacacct tgatcgatta accattgaac agaatcaata aattgcaccg
    10921 gcgaatacaa ttgtttcacc atttgctgtt taatcgtctc tgcgtctgtt tcaggtcttg
    10981 catgaacatt ttgtacgacg ggggttgtcg catcatgcca ctcaaattga ttgatatacg
    11041 ttttaaattc atcttcaatg acttgcatca tagacgaatg aaacggtcct gaaacgtcta
    11101 atggcatcac tcttttcgca ccaagtgatt taccttcact cactaaacga tccacagcaa
    11161 ctttatgacc tgacacaacg atttgtcctg gtgcattaat attcgcaggc tcgacgatag
    11221 catcttctgt tgagatttga tcgcaaatgg ctttcacttc atcaaatgat aaacctaata
    11281 ctgcagccat accaccaaca ccatttggaa atgcttgtgc catcaattcg ccacgtttac
    11341 gaacgatttg tacggcatct tcaaacttta aaacaccgct catcacaagg cttgagtatt
    11401 cgcctaaact gtgaccaatc gtgtaatcag cagtcgattg acccatcgca gcataaagtg
    11461 ccatgctatg tgttaacagt gcaggttgtg tattttcagt ttgccctaac acttgattgg
    11521 gatcttcaaa catcgtctca agtaaattaa atggcatgtg ttcagcggct gcttctaaaa
    11581 ttttcgtcgc cgcttcatct tgttgataca agtcttgtgc catccctacc ttttgtgccc
    11641 cttgtccagg gaacatcaac acagttttac tcatcagtgt cgcctacctt tgctctcata
    11701 ttttcaacaa tttttgtttc acccgcaatt ttcgcttgac gaatcgctga ataaaacgcc
    11761 tttgcatttg aactgccgtg cgctttgacc acgataccgt ccaatcctaa caacactgaa
    11821 ccgccatatt cggaatagtc caactgtttc gcaatacgtt taatgtcatt ttttaagacg
    11881 agtgctgcta atttattctt aaggctcgat aacaaatcat ttttcaaaat tttaccgaat
    11941 gatttggcag tgccttctag gtttttcaat acgatattac ctgtaaaacc atctgtcaca
    12001 atcacgtcag cttcatcttc cataatcgat tttgcttcaa tattgccggt aaatttgaat
    12061 tggtctgttt cagacattaa acgaaatgct tcttttgtta agctatttcc ttttttatct
    12121 tctgtcccaa tattcaataa tgccactctc ggttctgcaa tatctcttaa cttttgcgca
    12181 taaatatgac cgagtaccgc attttgatac aaatgatccg ctttcgcatc agcatttgca
    12241 ccgacgtcta aaaatacgac acctttaccg ctcactgtcg gcaaagtaac gactaacgct
    12301 ggtcgcgcca cccctggcaa acgccctaca ataaagaggc ctgccgacat gagtgcgcct
    12361 gtgttacctg ctgagacaca tccgtctgct tctccatttt tcactgcttc cgccatacgg
    12421 accatagagc tgtctttttt gcgtttaatg gcacgcactg gctcatcttc cattgaaatc
    12481 tcttcagttg tatgacgtat ttcaactctt ggatggttca aatgacattg cttttcatca
    12541 ccgaaaagaa taatctccaa atcatcgaaa tcttgtaccg ctttttcaac agcttcaatt
    12601 acgatgtgag gggcatcgtc gccacccatc atatctacag ctagttttac catcttattc
    12661 atcctcgctt atgtaataca ttttaaatag gccttcaaag actttttctt gcgcaacgaa
    12721 tgacgtcaca ctcatttcat aatatttatc atcatgaaat tggacttccg cttctgcaac
    12781 aacgacatca cccaattgta caggtttgac aaagtggatg tgactttctt tcgtcagtac
    12841 ggatgcgtgt ttcacaatcg cgacacataa tgaattcgct tgtgcaaaca acacatgtcc
    12901 acgtgcaatc gcatttcgcg taaagacatc tttttttgaa atcgtcataa ttgacttccc
    12961 agataaatta ggttctagtg acacgatatc acctataatg tcttgatctt caagggcact
    13021 aatattttga tattgatctt ttgctacatt tttcacgcgt tctcgaagtt caggaatttg
    13081 taactggctt cgatcaaggc gtatcgtctg tatgctcact tcaaacatat cactcaaagc
    13141 ttgatcagtg ataaatggat tttgctggat ggtagtttca ataagtgtcc gtctttcatc
    13201 tttcgtcttt ttcacatcat cgccacccaa atttagtacc aagtcttaat cgactccatt
    13261 ttattttaac atgtttacag cacagttcaa aatgatttca tgtcacatca acacgcgaat
    13321 atcaggtcat ttgactaccg attaatcaaa gctttggtac aacactttat cttcaataaa
    13381 tgtccgcaac cgttcaaatt cattcgtaaa aaacacacct gactgcatta attgagctgc
    13441 ttcatctctc gctacttcta acatgcgata atcctcgacc aaattgccca ctaaaaagtc
    13501 aggcaaacca ctttgtttca caccaaagaa atcgccgggc ccccgcattt ctaaatcttt
    13561 ctcactcaat tcaaacccgt ccgtcgtttg cgtcataatt tgcatacgtt cgattcctgt
    13621 ttctgtttta ggggaagcaa tgagtacaca ataactttga aaatcactac gacctacacg
    13681 accacgcaat tgatgtaacg tcgacaaccc gaaacgatcc gcgtcataaa tcatcataaa
    13741 agtcgcattg ggcacattca caccgacttc aacaacggtt gttgcaacaa ggacatcgag
    13801 ttcatgtgca ctgtaccgat gcatgacgtc atctttttca tctgcgctca ttttcccatg
    13861 taataaaccg attcttcgct gtggtaacgc tacttgtaaa ttttcataca gtgcaatcgc
    13921 gttttggacg tcttctaaat gttccgagct ttcgataagc ggtgaaatga catacgcctg
    13981 tctcccttgt cgcaactcgc gttccatatg ttcaatgact tgggcgtatt gctcatgttt
    14041 cacccagtaa gtttcaatcg gtttacggcc ttttggtaaa cttttaattg aggagacatc
    14101 catttcacca aatactgaaa tggcgagcgt tctaggaatc ggtgttgcag tcataaagag
    14161 aacattgctg agtgcacctt tttcacgtaa cttttgacgc tgttgcaccc caaaacgatg
    14221 ctgttcgtcc gtaatcacaa gacccacatt atgaaacgcc acatcatctt gaatcaatgc
    14281 atgtgtacca atcaagcaat caatttcgcc atttgctaac cgttcaagca agagctgacg
    14341 ttttttccct ttgacagaac cagttaacag cgctacgttc atatacggtc caaataattc
    14401 gaccaaactt tccgcatgct gttccgctaa aatctctgtc ggtaccatca atgctgattg
    14461 gtatcctgct gttttcatcg catacataca aatcgccgct acgaccgttt taccggagcc
    14521 cacgtcccct tgtaataaac ggtgcatacg tattggtgct ttcaaatcac gaaaaatttc
    14581 attcacactt tgtttttgcc cctctgtcag ctcaaaaggc aacgtctcta taaacgtttt
    14641 aacttgctga atatcatatt gtacttctat cgcttcttct gacatttttt ccatacgatt
    14701 gagccactgc atacgaagct caaacataaa aaattctgta aaagcaaacg tccggcgtgc
    14761 acgtaataac gattgctgat ctttcgcttc atgaagggca tgtatagtat catgtaacgt
    14821 ttctaacttg tattgttcac gcatcgaagc cggcaaccat tcatgaattg taatgtcttg
    14881 tagtgtttgt tgaatcatat cgcgcaacgt tttttgtttt aacccttctt tcacacgata
    14941 aacaggtgta aactgcgcat ccgctaactg cgacagatca aaaaacattt tctgaccatt
    15001 aatttcttgt ttacggcgag accattttcc tttaataacg accgtctcat gcaactgaat
    15061 tttatttttc aaatagggtt gattgaagaa cactgctttg accgcaatcc cattaatcat
    15121 gagatgaact gtcaattttg aacgatttct tccaaaaaaa gcgacagtgg gggttgaata
    15181 tacttccccg cgaactgtca catgagattc atcttcagcc gtcgtcaaat caaccaacgt
    15241 attatcttca taacgcgtcg gtaaataaag caccaaatct tgaatggtat gaatattcat
    15301 ttcgtttaaa atggccaacc gtttaggacc taaccctttg atgtccttaa gcgcataagg
    15361 attttcaatg aggtttaact ttgtcattat taatcaccaa aaatctgttg ttttaatcgc
    15421 tgacctgttg gtgtacccgc taagccacca cgacctgttt cacgcaaagc agatggcatc
    15481 gtttgaccaa ttttatacat cgcatcaatg acttcatctg ttggaatgcg agatgtaata
    15541 cctgccaatg ccatatccgc tgacacaatc gcattggacg cgcccgccgc attacgtttt
    15601 acacaaggta cttccactaa gcctgccact ggatcacata cgagacctaa catattttta
    15661 agacaaatcg caaaaccttc tgcagattgt tgcggtgatc cgccagctgc ttcaacaatt
    15721 gccgcagctg ccattgcact tgctgaaccg acttctgctt gacagccacc tgccgcacca
    15781 gaaatagacg cattgttcgc tacaacaaaa ccaaaagcac ccgacgtgag taaaaagttc
    15841 aacatatctt gtcggtttaa ttgtaatcta tttttaagtg aaaataaaac accaggaaca
    15901 acgccagcag aacccgcagt aggtgttgca caaattttcc ccatcgctgc attcacttca
    15961 tttgtcgcta ctgctttact tactgcatct aacactagat tacctgctaa tgcttggccg
    16021 ctttcgatgt attgtttcat taagaccgca tcgccacccg ttaatcctgt tttagaagtg
    16081 acccctgcta atccttcttc aagtgcattt tccatcgttt gtaaattacg atccatgtgc
    16141 gtatacactt cttcagctgt catacccgtt acagccattt cttgctctaa cataacttca
    16201 taaatcgctt tattctccgc ttcacatctc tcaattaatt ctttgacact tttaaacatt
    16261 ttcacgtctg tcatcattta attatccccc atcaacgaaa ctgttacgac acctggaact
    16321 tgtcgaatcg catctaaaat cttgtcattc acttcatcgt ccagttcaca cgtcattaac
    16381 gcttgatcac ctttttcttt tcgtgacact tgcatactgc cgacgttaat accgtcatca
    16441 cctaaaatat tggcaacttt accaatcgta ccaaatgtat cttgatgaaa tacgagtaat
    16501 gtcggatagt taccactaat ggctaatgga aaaccgttaa tcgcgacaat ttcaatttta
    16561 ccgccaccaa tcgatacgcc ttcaacagaa atatttttta ctccatcggt catgtcgata
    16621 attgctgtgt ttggatgtga acgttcttca ctcatttcaa taaagtgtat gcgcatgccg
    16681 gcctcttttg cagtttcgag actcgttaca atgcgatcgt catctgtgtc atagccgagt
    16741 aatcccccga ctaatgcgac gtctgtaccg tgccctttgt atgtttccat aaatgagccg
    16801 tatagataga tgtctgcccg ttctggttgt ttgccgaata gatctcttgc gacaagaccg
    16861 attctgacgg cacctgctgt atgtgaagat gacggaccaa ccattgtagg tccgataata
    16921 tcaaatacgc ttttatattt catttttgct ccccccgttt ttgaccatca aatgtgtctc
    16981 tttattatat caatgttctt tgtagaatgt aatttttgtt gttttttatt atttgtgttt
    17041 gattgtgttg tttttcctat atggttttga acatttggtg tttgtgatac gtttggtttt
    17101 gatgcggtgt ttttgataca tttcaggtta taatgtcgcg ttggttttga cattgtagtg
    17161 tattggatac gttggttttg acattgtagt tcacagaata ctattccttt aacatttcag
    17221 ttatttggat tgcttgccac cctcacgttc ctaggcgctc gcttcaactc aattcggctt
    17281 aattgtggtg tacatggggt ggttgccgaa ttggattttg ggagcagtac agtaatctca
    17341 tgtgtaacaa agatttcgtt gtattgcccc cgcaaggctg actgggcttc tcaaaagcaa
    17401 gcgtattgag aagtcagaca actactgcga taaccattaa ccactttcaa ggtttaaaga
    17461 catgcatttg tattgaactc tatgcctcag gagtcttggg tggctttggc aatctctggc
    17521 atcgtttttg agccgtcatg atacatggaa ggcatgtcca cttgttgcct aagaacagtt
    17581 caatagactt aatgcctaca ccattacact tctgtaccaa gaagcacctt tgaaaatcaa
    17641 aagcagtcca ttttaactac agtttcaaaa aggcatatgc tcattttcaa tacccttttc
    17701 tagaattatc aagacacacg atgcaaatca aaaaaatata ctaacattaa gtaaacatca
    17761 agtggtgagt tgatttctgc cctaggaatg cgaaagttaa gttcgtcaat ctgataacaa
    17821 cgctctactc cgtaatacgg aaaacccaac gaccattaaa aagcatcaaa caacgatgat
    17881 acgtcgtctg atgcttttta ggttctatca atcaaactat tctactgcaa ataagtatgg
    17941 ataaattggc tgttgaccgt cttgtacttc aacttcaacg tcttcatagt gctcacctac
    18001 gaatgtttca atccaatctg ttaattcgct ctccgcttct tcacctgtga taatcgttaa
    18061 aatttcacta tcttcgctta acatgtgatt taaagtatct ttcaatacgg tttgcttatc
    18121 tcggtcactt gcgatgattt tatcttctac aagtcccatg aaagcacctt tttcaatttc
    18181 gataccgtca attttcgtat ctctcacggc ataagtcatc gcacctgact ggatgtcgtc
    18241 aatagctgca gtcattgctt cttcgttagt cgctaggtcc gcgctttcat cataatggaa
    18301 catggctgcg ataccttgtg ggacagtacg tgttggaata atgattgttt caacttcaac
    18361 aatatctgct gcttgttgac tcgccatttg aatattttta ttattcggta aaataatggc
    18421 acgcttacaa ccactgtcgt taatcacttt gacaatgtct tcagttgaag ggttcatcgt
    18481 ttgaccgcca ctaatgacat gtgtcgcacc cattgatttg aacagctttg taatgccgtc
    18541 acccattgaa atggtaatga ccgctgtttc tacagtttgt gttgtatcat ttgtattttt
    18601 tgttttagat tgatgtgctg cttctttacg taaaacttca cggtgttgtt cacgcatatt
    18661 ttcagcttta actttaatca attcaccgta cttttgaccg aatgaaaaga cttcacctgg
    18721 tgtttctgta tgaacatgga ctttcacgat ttcgtcatca ctaattacca ataatgaatc
    18781 cccaaactgg ctcatttctt gtctaaagtc agcttcatca aacggtgctt tatctgcttc
    18841 gaaacgcacc atcatttctg tacaatagcc atagacgata tcatctgtat caataacccc
    18901 atgaaaatcg tgttcatcat taaagaaagc ttcacgatcg actttcggtg cttctgcgac
    18961 aattttttca cctttcatcg ctttaaggaa accttcataa actaatgtca ggcctttacc
    19021 accgctatct acaacgccga cttctttcag cactggtaat aaattaggtg tattttcaag
    19081 tgacttttgc gcttcttcat aaacatacgc catcacttcc aaacaatcgt ctgtttcttg
    19141 cgctttttta acagctgctg caccggcatc tttagcgaca gtcaaaattg tcccttctac
    19201 cggtttcatg actgctttat aagctgtttt aacaccagct tcaaaacttt ccgcgaattg
    19261 tttgacatca atttcttctt tatcttctaa tgcttttgaa aatccgcgga aaatttgaga
    19321 tagaataaca ccagagttgc ctcgtgcgcc catcaataat cctttagaaa aagctttacc
    19381 taagttccca atatgagccg tcaaatgggc ctgtacttct tcacgtccag aagtcattga
    19441 caagttcata tttgtacctg tatccccatc aggcacaggg taaacattta atgcatccac
    19501 catgtccgca ttatttgata aattttgtgc cccttgtata atcatgtcgg caaatagatt
    19561 accgttgatc ttcgttatca tgcaaatatc ctcctatttg tctttcccgt cattattaaa
    19621 gcgcacgccc tgaacaaaaa tattcacaga gttgacttta agttttaatg tattttctaa
    19681 agtatatttc acagttgatt gcacgttttg cgcaacttct gaaattttca caccgtaact
    19741 tacaataatg tgcatatcta cgtctaatac accattatct tccctcacta cgatcccttt
    19801 cgcatagttt tcatgtccta aaatttcagc aataccgtct ctcacttgtt gacgtgaagc
    19861 cattccaaca ataccataac attctacagc tttaccgcct acaattgacg cgattacttc
    19921 atttgagata tcgatacttc cataatcatt tgtaatttct aaagccatcc ttttcgcctc
    19981 ctatttacaa attcactctt ttatatc
//
LOCUS       DANHOL010000033        19823 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.033, whole genome shotgun sequence.
ACCESSION   DANHOL010000033 DANHOL010000000
VERSION     DANHOL010000033.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 19823)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19823)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19823
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.033"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(450..1154)
                     /locus_tag="PTC08_000847"
     CDS             complement(450..1154)
                     /locus_tag="PTC08_000847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavin reductase family protein"
                     /protein_id="HDK5682369.1"
                     /translation="MEYSPKQGVRSHGLPHDPFKSSTVPRPIGWISTVSKDGKDNLAP
                     YSQYQNLTWDPPMVMFAANQSVLGKHERKDTVKNAEETGWFVWNMATYDLREAVNLSS
                     KALPPEEDEFEFAGVTKEACIEAPGYRVKESPVHFECEYVQTIRIPTGDPVSTVDIVI
                     GRVAQVHIDDKVIMENGKLDIKSIRPIARLGYYDYTVVDQIFEMKAPAATKEELAGLE
                     GISIIQLNKRASDTIK"
     gene            complement(1452..2000)
                     /gene="hxlB"
                     /locus_tag="PTC08_000848"
     CDS             complement(1452..2000)
                     /gene="hxlB"
                     /locus_tag="PTC08_000848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-3-hexuloisomerase"
                     /protein_id="HDK5682370.1"
                     /translation="MAIQQQFERIRHEIAQTLSQVDDQAIAEFEQVVSDAEAVFVTGK
                     GRSGFVANGFAMRLNQLGKKAHVVGEATTPSIQKGDVLIVISGSGSTTHLKLLADKAH
                     EVGATIALVTTATDSKIGELANVTLILPAGTKYQAEGSEQPLGSLFEQSAQLMLDGVV
                     LDFMTAWDVDETTMQNNHANLE"
     gene            complement(2002..2640)
                     /gene="hxlA"
                     /locus_tag="PTC08_000849"
     CDS             complement(2002..2640)
                     /gene="hxlA"
                     /locus_tag="PTC08_000849"
                     /EC_number="4.1.2.43"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019834869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hexulose-6-phosphate synthase"
                     /protein_id="HDK5682371.1"
                     /translation="MELQLAIDLLNKEDAAELAKKVTDYVDIVEIGTPIVINEGLPAV
                     QHLKENVKDEDVKVLADLKIMDAADYEVSQAVKFGADVVTILGVAEDASIKNAVEEAH
                     KHGKELLVDLIAVQDLEKRAKEIDALGADYIAVHIGYDLQAEGQSPLESLRKVKSVIK
                     NAKIAVAGGIKPETVKEVADEGPDLIIVGGGIANADDPREAAKQIREAIEGK"
     gene            complement(2738..3472)
                     /gene="nagB"
                     /locus_tag="PTC08_000850"
     CDS             complement(2738..3472)
                     /gene="nagB"
                     /locus_tag="PTC08_000850"
                     /EC_number="3.5.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosamine-6-phosphate deaminase"
                     /protein_id="HDK5682372.1"
                     /translation="MKIINLGREANASFYVASELFKQMLYQKDSRLGLATGGTMVKVY
                     DYLVELLQKNQLDVSQVETFNLDEYVGLASDHEESYCQYMKHVLFGAYPHFTAENIHV
                     PNGEASDIEAESQRYEALLEEGGPLDIQILGIGQNGHIGFNEPGTPFESLTHCVDLTE
                     STIKANSRYFDSIDDVPKQAISMGLSSIMKAKRIILLAFGEQKREAIRHLMSQEVTTD
                     VPATILHRHPHVEVYVDDAAMPEIDN"
     gene            complement(3478..4152)
                     /locus_tag="PTC08_000851"
     CDS             complement(3478..4152)
                     /locus_tag="PTC08_000851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmannosamine-6-phosphate 2-epimerase"
                     /protein_id="HDK5682373.1"
                     /translation="MNLTQGLIVSCQALPDEPLHSSFIMGKMALAAKQGGAVGIRANT
                     KADILAIKKEVDLPVIGIVKRDYDNSSVFITATQKEVDELIESGCEVIAMDATLRERP
                     AEDLETLVQYIRKAAPDVEIMADIATVEEAQNAERLGFDYIGTTLHGYTEQTTGQVLY
                     ANDFAFLKDVLANVSQKVIAEGNVITPEMLKTVMDLGVYAAVVGGAITRPRDITKRFV
                     KMIEEE"
     gene            complement(4153..5691)
                     /locus_tag="PTC08_000852"
     CDS             complement(4153..5691)
                     /locus_tag="PTC08_000852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIC"
                     /protein_id="HDK5682374.1"
                     /translation="MNTLFDKAQQFGKSFMLPIAILPAAGLLLGIGGALSNPNTIEAY
                     PFLNIPLLQHLFILMRTAGSIVFQNLSVLFAIGVAVGLARADKGTAGLAAMLGFLIMN
                     ATMSGLLTITEQVAAPDQLAKAGQGMVLGIQTVETGVFGGIIVGIITAMLHNQYYKIT
                     LPQFLGFFGGSRFIPIVTAFASIVLGLVMFFIWPLFQHAIMGAGQIVKQTGVIGTFLY
                     GFILRMLGPFGLHHIFYLPFWQTALGGSLELNGKLIQGTQNIFFAQLGDPATAHYYEG
                     VSRYMSGRFITMMFGLLGAALAIYHTAKPERKKVVGGLMLSAALTSFLTGITEPLEFS
                     FLFVAPLLYVVHALLDGLAFMMADIFNITVGQTFSGGFIDFILFGVLQGQAKTNYLWI
                     IPIGLVWFALYYVVFRMLIQMFNFKTPGREDETTQQSIQTNERATTIIQGLGGHENIE
                     IVDCCATRLRVTLKDTQKVNESLIQGTEPKGIITKGNGVQIVYGPHVSTIKNEVEEQL
                     EGSH"
     gene            5811..6650
                     /locus_tag="PTC08_000853"
     CDS             5811..6650
                     /locus_tag="PTC08_000853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HDK5682375.1"
                     /translation="MKIENSIQQNQHHFTKVDQQIAQFILSVDDHTDLGAINQLADAI
                     GVSPSSITRFAHKLNYDSFQSFRFAIQHELQTEPIHNSPSIQILHQHYRAIMDHTGEF
                     LIEDDLMYLVNTIEQSDKIIFIGIGSSGLSAQELYFRTSRMGFNTLAITDAHLMTVIG
                     HMCHGNTTIVAFTNSGATKEIMDSLSHGRENGATVIAISHFRTPALEQHCHRIIMTAD
                     RNQTHDAYFINSQLANHFIIDLLSYHLLQNEERLAHFTSSYEQLSAKRTHTTYSTHDF
                     RRL"
     gene            6736..7095
                     /locus_tag="PTC08_000854"
     CDS             6736..7095
                     /locus_tag="PTC08_000854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YojF family protein"
                     /protein_id="HDK5682376.1"
                     /translation="MQPITEEAVQALLDEYANQPVYLHVETTNGAYANHFDQRVFNAG
                     TFLRNIQVTYQHAQLKGGHKDPYRVGLKLGEHSWVYVQGLTHYEVTEDGMFLLAGFNY
                     EGQLAAALEMSHKPFKA"
     gene            7114..7791
                     /gene="bshB2"
                     /locus_tag="PTC08_000855"
     CDS             7114..7791
                     /gene="bshB2"
                     /locus_tag="PTC08_000855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002458388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacillithiol biosynthesis deacetylase BshB2"
                     /protein_id="HDK5682377.1"
                     /translation="MTTEHHILVIFPHPDDETFSSAGTLARYIDEGVPVTYACLTLGQ
                     MGRNLGNPPFATRESLPDIRERELDDAMKAIGITDLRKMGLRDKTVEFEPAEEMDAMV
                     QSLIDETQPSTIISFYPGYAVHPDHEATAEAVVRTVGRMDVARRPKLQLVAFSNDAVE
                     QLGEPDIVNDISAYQDRKYAAFEAHRSQTGPFLEQLANPQGDVSGAPKDAANFLTTET
                     FWTYSFK"
     gene            7837..8715
                     /locus_tag="PTC08_000856"
     CDS             7837..8715
                     /locus_tag="PTC08_000856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002445753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE2"
                     /protein_id="HDK5682378.1"
                     /translation="MTEFDLSTREGRWKHFGSVDPVKGTKPTTKDEMTDLQSTHKNFL
                     FEIEEVGIKNLVYPVWIDQYQTAGNFSFSTSLNKDEKGINMSRILESVEAEYDNGIRL
                     EFDALTQLLNQLKSRMKQHSAGVDVSGKWFFNRYSPVTQIKAVGHADVTYGFALENDV
                     VSRKEITIEAAVTTLCPCSKEISEYSAHNQRGIITVKVYLDKTATLPEDYKEVILDAM
                     EANASSMLYPILKRPDEKRVTERAYENPRFVEDLIRLIAADLVEVSWLEGFDIECRNE
                     ESIHQHDAFAKLKYRK"
     gene            complement(8873..9535)
                     /locus_tag="PTC08_000857"
     CDS             complement(8873..9535)
                     /locus_tag="PTC08_000857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HDK5682379.1"
                     /translation="MKAIEINHITKKFGSRTIIRDFSLDIHQGEFVAIVGKSGCGKST
                     LLNMIGLLETIETGEVKIYNQAIPKINSATATKLRRHTINYLFQSYALISDMTVKDNL
                     LLALEYVKISKKEKLDKIQQVLQKLEIDTLLNDKINTLPGGEQQRVAVARTILKPGDI
                     ILADEPTGALDPKLADIAFEFIRELRDTDNKTIVLVTHNIEQAKQADRLIDLNELNEK
                     VS"
     gene            complement(9535..11730)
                     /locus_tag="PTC08_000858"
     CDS             complement(9535..11730)
                     /locus_tag="PTC08_000858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HDK5682380.1"
                     /translation="MKNIQLVGKIRYLIFALVAIQAIIILMMTTFRLGEWYDEKWDEV
                     QNSANQHQFYLNRITIEQKEDVMDVLKQFPELLILTSTVDEETNHELIGLTGKAEQFP
                     EIQLYDHTIMSQQDIVKLLNSKNEKATIGDFNGSIHNIKEFNTPYFAKRHSIVDLQSY
                     IHTTKSINGSYTVYGSEQQFKQLIKALSVVTHQSETALTTINGGVAKMDNTVTVVLSC
                     LLIMTMLAVFILFIAVTVANLKNLGHLTLLGWSKWAVANKVLRQFVVFSILIIPVFAV
                     ILWYVSGWQSITLKVLSYFFLGGVINLTLTLFMTGIAVLTVFSMKPVDAIKGKVPHRT
                     LYGMGALGYVLLSILLVFGSVRLDEPIKEVVQNFRIAKQWENVSNYYTLKDMQTGEDL
                     STIAGKSNALDRDIYHWYQSIVKDANVFIAHSEYFDKDLLEYYREQAIYENVPEKAFW
                     YMTFSPNYLKNIHLNVAQQYIDNAESGTKVFLIPDSYTKQQKEKFEQWIKESESTERN
                     ENDIPTAYNQENRFKFITYHFQQKIFSWNNTPNDEVMVKDPIIYIITPENMNYLQSES
                     LRSNDLNSYIKFKDRKTAENYTTKSYLEQYHLADNELKFVPIQVFIDGLQKDLAETIV
                     WFGSFIVGALLLSILLLISLAYVYRLTHYERLYISKFLGFSFFKMYSLPMILILSIWA
                     IDMLVVLFWPSKSGIVSITIYGAIQLLIFYLYMSRNDIKQLLLTIKEKS"
     gene            complement(11750..11968)
                     /locus_tag="PTC08_000859"
     CDS             complement(11750..11968)
                     /locus_tag="PTC08_000859"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682381.1"
                     /translation="MKLKSPTFHGVKIHWEYGRTFFTYSYSIVQTGRFTHSATANSTF
                     SGWKRPGVKAVAKQYVGWRSAVAYWNCR"
     gene            complement(12187..13053)
                     /locus_tag="PTC08_000860"
     CDS             complement(12187..13053)
                     /locus_tag="PTC08_000860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HDK5682382.1"
                     /translation="MVKLIATDMDGTLLNAAHEVSKENVEAIQYAQSQGVTVVIATGR
                     AFYEANDPIIPTGLKVPYICLNGAEVRDESFDIVHTSSLNHGLYQRIRQTLNNENMYY
                     QVYTNFGIYTEDPEKDLAIYLDIAKHSGQKGDVEKIRKHIQHRIDLGTLKVVDNYDKI
                     ESVPGELIMKVLAYDKDLAKIERVKKQLSESSNLAVSSSSLGNIEITHIDAQKGLALQ
                     AIAEQLGIDMADTMAVGDNLNDKSMLERAGVAVAMENALPELKDIATFVTDSNENSGV
                     AKAIYRALGKEE"
     gene            complement(13215..13688)
                     /locus_tag="PTC08_000861"
     CDS             complement(13215..13688)
                     /locus_tag="PTC08_000861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside deaminase"
                     /protein_id="HDK5682383.1"
                     /translation="MTSHQYYMSIALEEARKAAKKGEVPIGAVVVKNGKIIARAHNLR
                     ETDQSPTAHAEHLAMERAAAQLGTWRLEGCTLYVTLEPCVMCAGTIVMSRVDTVVFGA
                     MDPKGGCVGSLMNLVQDSRMNHRASVVSGVLAYSCGEILRQFFRALRLYKKRQKN"
     gene            13758..14381
                     /locus_tag="PTC08_000862"
     CDS             13758..14381
                     /locus_tag="PTC08_000862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxynucleoside kinase"
                     /protein_id="HDK5682384.1"
                     /translation="MKKPFIAIEGPIGVGKSSLAHQLSQSYHFYEAKEIVGENPYLSD
                     FYSDISKWSFQTEMFFLCHRYKDYQDLAEHTDGIVSDYHIYKNKIFARNTLNDAEYDK
                     FSRIYDILTEDLISPDFTVILDADLSVLKQRIAKRDRSFEANIQDSYLLKLKEDYANY
                     YHSLKSEGHAVLWVDTTDLDFVQNEADYTYVFNQINELIGGHNHESI"
     gene            14368..15033
                     /locus_tag="PTC08_000863"
     CDS             14368..15033
                     /locus_tag="PTC08_000863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxynucleoside kinase"
                     /protein_id="HDK5682385.1"
                     /translation="MNQYNIPSNAIITIAGTVGVGKSSLTRAIAEKLNFRTSYENVEH
                     NPYLDKFYHDFKRWSFHLQMYFLAERFKEQKRMFEYGGGFVQDRSIYEDVDIFAKMHV
                     EQGTMTPEDFKTYSNLFEAMVLTPYFPKPDVLIYLESDYEAVLERIQARGRQMEIETN
                     PEYWEMLFQRYENWINQFNACPVVRVNINEYDLLSHPESVDVVLKKIGHVIHTYRQVD
                     QRS"
     gene            complement(15586..16284)
                     /locus_tag="PTC08_000864"
     CDS             complement(15586..16284)
                     /locus_tag="PTC08_000864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HDK5682386.1"
                     /translation="MISPKWILFDKDGTLIHFDDSWTKIGIQLVNDICDHFKLEDRLA
                     VYQAIGIKDERFEVNSVMNGGTLKDLIAVLQQFTNENIADWVAQRSQTLISQRVPEIN
                     LYEGVASLMQRLKAQGYALGIVTSDNHTGVTQFLEETQLTDVFDMVISTNDGQYEKPD
                     IRLLQPLWNRGVRGEDVIMVGDTDNDMLTGKNMKSALNVGVRTGLGQEAKFEAADVVI
                     DHVGLLENVLPKAK"
     gene            16522..17514
                     /gene="sph"
                     /locus_tag="PTC08_000865"
     CDS             16522..17514
                     /gene="sph"
                     /locus_tag="PTC08_000865"
                     /EC_number="3.1.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sphingomyelin phosphodiesterase"
                     /protein_id="HDK5682387.1"
                     /translation="MKKLKQKKRLTSLLLATTMLLGIMNTGVSHAASDENQAELKLAT
                     HNVYMLSGFLYPNWGQSKRADLISKSKYIQDNDVVIFNEAFYPASANQLFNNLKSSYP
                     YQTAVLGRSTSGWDRTEGHYSSTTFENGGVAIVSKYPIRERIQHIFQHGCGFDNDSNK
                     GFVYTKIEKNGKFVHVIGTHTQSEDTRCSVGQDRAIRAEQMKEISNFVKSKNIPKDEV
                     VYIGGDMNVNKNAGNGEFQDMLKNLNVSDVTYTGHSSTWDPQSNSIAKYNYPNSAPEY
                     LDYIFVDKDHRQPGQLINEAVAEKSPTWDVYKFPYLYVYNDYSDHYPVKAYSKS"
     gene            complement(18224..19306)
                     /locus_tag="PTC08_000866"
     CDS             complement(18224..19306)
                     /locus_tag="PTC08_000866"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid aminotransferase"
                     /protein_id="HDK5682388.1"
                     /translation="MSEKIELKVSQTLKEKPDLNQLTFGEVFTDYMLSFEYSTAEGWH
                     DLKIIPYGPIELSPAAQSLHYGQAVFEGLKAYKHDGEVVLFRPEENFKRINQSLERLK
                     MPQIDEALLLEGLKQLVDIDRDWVPSGEGQSLYIRPFVFATQGALGVHPSHEYRLLII
                     LSPSGSYYGGDSLRPTKIYVEDEYVRAVRGGVGFAKVAGNYAASLLAQANANQLGFDQ
                     VLWLDGVEQKYVEEVGSMNIFFVIDGKVVTPSLNGSILPGITRKTVLELAASLGYETE
                     ERRISIDELYELHQSGALTEVFGTGTAAVISPVGTLQYREEEIVINNNETGPITQKLY
                     DHYTGIQSGQLEDPHGWRVVVPHYER"
     gene            complement(19472..19823)
                     /locus_tag="PTC08_000867"
                     /pseudo
     CDS             complement(19472..19823)
                     /locus_tag="PTC08_000867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002498689.1"
                     /note="frameshifted; internal stop; incomplete; missing
                     N-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
BASE COUNT         6075 a         4123 c         3277 g         6348 t
ORIGIN      
        1 ctcaaagtct caatgcattt ctcatgcttt tatacataac tcaatatatt ctttttttat
       61 ttataagtaa agcgagttga ttgtatattt aaatgcaata aagaccggga catgatacgt
      121 tttcccagtc ttccttcaat gtaaaaattt taatgctttt ttcaccacag aaactgaata
      181 gcacaatttt atgctacaca ctttctttca agtgataaca acgattacac tatatctgtt
      241 aaaatgtcgc ctaagataca ccttgaagtt cagatacttt ggttttaatc ataatttcat
      301 catcttttgt taactttttt gttacaatgg ctacatttca attcaactca aaacattgat
      361 gtgctcctat gaaactttag aataaaactt aaacattcct aaaatttttc attattttgt
      421 ttaaatgtac ctgtaagcat gcaacgacat cacttaatgg tatcggaggc acgcttattc
      481 agttgtatta tcgaaattcc ttcgagtcct gcgagttctt cttttgttgc ggctggcgct
      541 ttcatttcaa aaatttgatc cactactgtg taatcataat aaccgagacg tgcaatcggg
      601 cgaatagact taatatctaa cttcccattc tccataatca ctttgtcatc gatgtgaact
      661 tgcgcgacac gaccgataac aatgtctact gtagacacag gatctcccgt tggaatacga
      721 atggtttgta cgtactcgca ttcaaaatgg accggtgatt ctttaacacg atatccgggt
      781 gcttcaatac atgcttcttt cgtgacacct gcaaactcaa actcgtcttc ttcaggtggt
      841 aatgccttag acgacaagtt caccgcttct cgcaaatcat acgtggccat attccaaaca
      901 aaccaacctg tctcttctgc attctttact gtatctttac gttcatgctt gccgagtact
      961 gattgattcg ctgcaaacat gaccatgggt ggatcccaag ttaagttttg atactgacta
     1021 taaggtgcca gattatcttt gccatctttt gaaaccgttg aaatccaacc aatcggacgc
     1081 gggactgtac tactcttaaa tggatcgtgt ggcaaaccgt gacttctaac cccttgtttt
     1141 ggtgaatact ccatcctatt acctccttca tcattgcctt tactttaatc taacaaatgg
     1201 tgtcatccgt tgctaataca tgttttctat ttaattatta ggcagttcta ttaacagaat
     1261 ctgatgtacg ttgaacagaa ctgttcccta tatccacttc caacatcggg acatgtagtt
     1321 tttgtcatta aatcattatt ccgaccatcg ctttcctttc aaacttttca ctcattcaaa
     1381 aaaagctagt cgctacattt tggtgtagaa actagcttca tcatcgcctt taatttgtca
     1441 ttctattcat tttactctaa attcgcatga ttattttgca tcgttgtctc atcgacatcc
     1501 catgcggtca tgaagtctaa cacgacacca tctaacatca actgtgcact ttgttcaaac
     1561 aagctgccga gtggttgttc agaaccttca gcctgatatt tcgtgccagc tggtaggatg
     1621 agtgtcacgt ttgccaattc accgatttta gaatccgttg ctgtcgtaac caatgcaatc
     1681 gtcgcgccga cttcatgcgc tttatcggct aacagtttta aatgtgttgt cgaacctgag
     1741 cccgaaatga caatgagcac atcccctttt tgaatggacg gtgtcgtcgc ttctccaacg
     1801 acgtgcgcct ttttaccaag ttgattcaaa cgcatcgcaa aaccattcgc gacgaatcct
     1861 gaacggcctt tacctgtcac gaataccgct tctgcatcag atacaacttg ttcgaattcc
     1921 gctatcgctt ggtcatccac ttgtgataac gtctgtgcaa tctcatggcg aatccgttca
     1981 aactgttgtt gaatggccat gttatttacc ttcaatcgct tctcggattt gtttagccgc
     2041 ttcacgtgga tcgtcagcat ttgcgatacc gccaccgacg ataattaaat ccgggccttc
     2101 atccgcaact tctttaactg tttctggttt aattccacca gcgacagcaa tttttgcatt
     2161 tttgatgacc gactttactt ttcttaagct ttctaaaggt gattgccctt cagcttgtaa
     2221 gtcataaccg atatgcacgg cgatatagtc tgcacctaat gcgtcaattt ctttcgcacg
     2281 tttttctaaa tcttgaacag caattaagtc gacaagtaat tctttaccat gtttgtgcgc
     2341 ttcttccacc gcatttttga tggatgcatc ttcagccaca cctaaaatcg tgacaacatc
     2401 cgcgccaaat ttcactgctt ggctcacttc atagtctgcc gcgtccataa tttttaagtc
     2461 agctaatact ttgacatctt catctttcac gttctctttt aaatgttgca cagctggtaa
     2521 gccttcatta atgacgatag gtgttccgat ttcaacaata tcaacatagt ccgttacttt
     2581 tttcgcaagt tctgctgcat cttctttatt taataaatca atggctaatt gtaattccat
     2641 gatttcatca atcctccgtc atgttttgtc tcttacaact cgtgctatac cctttagaaa
     2701 agagattaaa catgtcggat ttatagttca acgcgactta attgtcaatt tcaggcattg
     2761 ctgcatcatc tacatacact tctacatggg gatgacgatg taaaatcgtc gctggcacat
     2821 ccgtagtcac ttcttggctc attaaatgac gaatcgcttc acgtttttgc tcaccaaacg
     2881 ctaacaaaat gatacgtttc gctttcataa tagaacttaa tcccattgaa atggcttgtt
     2941 ttggtacatc atcaatcgaa tcaaaataac gactattcgc tttaattgtg ctttcagtta
     3001 aatcgacaca atgcgttaaa ctttcaaacg gtgtccctgg ttcattaaaa ccaatatgac
     3061 cgttttgacc gatgcctaaa atttgaatat ctaacggacc gccttcttct aatagcgctt
     3121 cataacgttg agattccgct tcaatatctg atgcttcacc atttggcacg tgaatatttt
     3181 cagcagtaaa atgaggatac gcgccaaata aaacatgttt catatattgg caatagcttt
     3241 cctcatgatc tgacgctaag ccgacatact catctagatt aaatgtttcc acttgagaca
     3301 cgtcgagttg gtttttttga agtaattcca ctaaatagtc atacacttta accattgtgc
     3361 cacccgtcgc taatcctaaa cgactgtctt tttgatataa catttgttta aataattcgc
     3421 tcgcaacgta aaatgatgca ttcgcttcac gacctaaatt aatgatcttc attatgctta
     3481 ttcctcctca atcattttca cgaaacgttt cgtaatatca cgtggtctcg taatggcacc
     3541 accaacaact gcagcataca cacctaaatc catgactgtt tttaacattt caggcgtgat
     3601 cacattccct tcagcgataa ctttttgcga tacattcgct agcacgtctt ttaaaaacgc
     3661 aaaatcattg gcgtataaca cttgacctgt cgtttgctct gtatagccat gtaacgtcgt
     3721 accaatataa tcaaagccga gacgttctgc attttgcgct tcttctaccg tcgcaatgtc
     3781 tgccataatt tcaacatccg gcgctgcttt acggatatat tgtactaaag tttctaaatc
     3841 ttcagcagga cgttcacgta atgtcgcatc catcgcaatc acttcacatc cgctttcaat
     3901 aagttcatct acttcttttt gtgtcgcagt aataaatacg gaagagttgt catagtctcg
     3961 cttcacaata ccgatgactg gcaaatccac ctctttttta atcgctaaaa tatctgcttt
     4021 cgtattcgct ctaatcccaa cagcgccccc ttgctttgca gctaacgcca ttttccccat
     4081 aatgaatgat gaatggagtg gctcatctgg taacgcttgg caagatacga ttaatccttg
     4141 tgttaaattc atctaatgac tcccttctaa ttgttcttct acttcatttt taatggtcga
     4201 aacgtgaggt ccatagacaa tttggacgcc gtttcctttc gtaatgattc ctttaggttc
     4261 agtaccttga atcaagcttt catttacttt ttgtgtatct tttaacgtga ctctcaggcg
     4321 tgtcgcacag caatcgacta tttcgatatt ttcatgtcca cctaaacctt gaataatggt
     4381 tgtcgcacgt tcatttgttt gtatgctttg ttgcgttgtc tcatcttcac gccccggtgt
     4441 tttaaagtta aacatttgaa ttaacattct aaaaaccaca tagtaaagtg cgaaccagac
     4501 gagaccgatt ggaataatcc ataaataatt cgttttcgct tggccttgta aaacaccaaa
     4561 caagataaaa tctataaaac caccgctaaa cgtctgccca accgtaatgt taaaaatatc
     4621 tgccatcata aacgctaaac catctaataa tgcatgaaca acgtaaagta atggggcaac
     4681 aaataaaaag ctaaactcta acggctccgt aatacctgtt aaaaaagacg ttaaagctgc
     4741 agataacatt aaaccaccga ccactttttt gcgctcaggt tttgctgtat gatatatcgc
     4801 gagtgccgca cctagcagtc caaacatcat tgtaataaaa cgccctgaca tataacgcga
     4861 aacgccttca taataatgtg ccgttgcagg gtcacctaat tgtgcaaaaa agatattttg
     4921 cgtcccttga atcaatttgc cattcaattc gagtgaacct ccgagcgcgg tttgccaaaa
     4981 tggaagataa aaaatgtgat gcaatccgaa aggccctagc attctcaata tgaaaccata
     5041 taggaacgta ccaatgacgc ctgtttgctt cacaatttga cctgctccca taatcgcatg
     5101 ttgaaataac ggccaaataa agaacatcac taaacctaat acaatagatg caaaagctgt
     5161 cacaattgga ataaagcgcg agcccccaaa gaagcctaaa aactgcggta atgtgatttt
     5221 gtagtattga ttatggagca ttgccgttat gatacccaca atgatccccc caaacacacc
     5281 tgtctctaca gtttgaatac ctaaaaccat cccttgccca gccttagcga gttggtcagg
     5341 cgccgccacc tgttctgtaa tcgttaaaag gccgctcatc gttgcattca taattaaaaa
     5401 gcccaacatc gcagctaacc cagcagtacc cttatctgct cgtgccaaac cgactgcaac
     5461 acctatcgca aacaatactg acaagttttg aaacacaata ctgccagccg tccgcattaa
     5521 tataaacaaa tgttgcaaca atggaatatt taaaaatgga tacgcttcga tagtgttcgg
     5581 attactcagt gcgcctccaa taccgagtaa taatcctgct gccggtaaaa tcgcaatcgg
     5641 taacataaag gacttcccaa attgctgcgc tttatcaaat aatgtattca atcttgtccc
     5701 cctcttcttc cctgttcact ctcaatatat cactaagaaa atttccgtca acaaaatacg
     5761 ttgttttgga aattattttc aaatatactg agtttaaaag gaggatgacg atgaaaattg
     5821 aaaatagtat tcaacaaaat caacatcatt tcacaaaagt tgaccagcaa atcgctcaat
     5881 tcattttgtc ggtagatgat catacggact taggtgcaat taatcagtta gcggatgcga
     5941 ttggtgtgtc accttctagt attacacgct ttgcacataa attaaattat gatagcttcc
     6001 aatcgtttcg tttcgccatc caacacgaac tgcaaacgga accgattcac aatagtcctt
     6061 ccattcaaat tttgcatcaa cattatcgcg ccatcatgga tcacacgggt gaatttctca
     6121 ttgaagatga tttgatgtac ctcgtcaaca cgattgaaca gagtgataaa atcattttta
     6181 tcggtattgg tagttctgga ttaagcgcgc aagaattgta ctttcgcacg tcgagaatgg
     6241 gcttcaacac gctcgctatt acggatgcgc atttaatgac agtcattggg cacatgtgtc
     6301 atggcaatac tacgatcgtc gcttttacga atagtggcgc aacgaaggaa attatggata
     6361 gtttaagtca tggtcgtgaa aacggggcga ctgtgatagc catttctcat tttcggacac
     6421 ctgcactgga acaacattgc catcgcatca ttatgaccgc tgatcgcaat caaacacatg
     6481 atgcttactt tattaattct caactcgcca atcactttat tattgattta ttgagttatc
     6541 atttactaca aaatgaagaa cgcttagccc attttacgtc gagttatgaa caactgtcag
     6601 cgaaaagaac acacacgact tattcgacgc atgattttcg ccgtctataa gattaaactg
     6661 agcagagcta tattaatttt gagttatttt tagtaaaata gatagataat cataatcagg
     6721 aaggcagtga atcttttgca accgattaca gaagaagccg tacaagcact actcgacgaa
     6781 tacgcaaatc aacctgtcta tctgcacgtt gaaacgacaa atggcgctta tgccaatcac
     6841 tttgatcaac gtgtgttcaa cgcaggtact tttttaagaa atatccaagt cacttaccaa
     6901 catgcacaac ttaaaggggg acataaagat ccttaccgtg taggactgaa gcttggcgaa
     6961 catagctggg tatatgttca aggtttaacg cattatgaag tgactgaaga tgggatgttt
     7021 ttattggcag gattcaatta tgaaggacaa cttgcggcag cacttgaaat gagccacaag
     7081 ccttttaaag catagaaagg agtattgatg attatgacaa ctgaacacca tatccttgtc
     7141 atcttcccac acccggacga tgagacattt tcttcagcag gtacgcttgc acgttatatc
     7201 gatgaaggtg tgcccgtaac ttatgcatgt ctgacactcg gacaaatggg acgtaatctt
     7261 gggaacccgc ctttcgctac acgtgaatca ctgccagaca ttcgcgaacg tgaactcgac
     7321 gacgccatga aagcaatcgg tattacagat ttacgtaaaa tgggcttacg tgataaaact
     7381 gtggaatttg aacccgcgga agaaatggat gcgatggtgc aatcacttat cgatgaaaca
     7441 caaccttcca cgatcatttc attttatccc ggttatgccg tccatcctga tcatgaagca
     7501 acagcagaag cggtcgtgag aactgttggt cgtatggatg ttgcgcgtcg tccaaaactt
     7561 caattagtcg catttagtaa tgatgccgtt gaacagttgg gcgaacctga tatcgtcaat
     7621 gacatttcag cttatcaaga ccgtaaatat gccgcattcg aagcacatcg ttcacaaacg
     7681 ggacctttct tggagcaact tgccaaccca caaggtgacg tttctggtgc gccaaaagat
     7741 gctgcaaact ttttaacaac cgaaacattt tggacttatt catttaaata aataacgtat
     7801 tgcacatgca tgtgacattt tagtggagga agatacatga ctgaattcga tttatcgaca
     7861 cgtgaaggtc gttggaaaca ttttggttca gtagatcctg tcaaaggaac aaaaccaaca
     7921 acaaaagatg aaatgaccga ccttcaaagt acacataaga attttttgtt tgaaatagaa
     7981 gaagtaggaa ttaaaaatct cgtgtaccct gtatggattg atcaatatca aaccgctggg
     8041 aactttagct tttcaacaag cttgaataaa gacgaaaaag gcattaatat gagccggatt
     8101 ttagaatctg tagaagcaga atatgacaac gggattcgtc tggaatttga cgcattaaca
     8161 caattattaa atcagttgaa aagtcgcatg aagcaacata gtgccggtgt ggatgttagt
     8221 ggtaagtggt tctttaatcg ctatagcccg gttacacaaa taaaagcagt aggtcacgct
     8281 gatgtgactt atggtttcgc gctagaaaat gatgtagtgt ctcgtaaaga aatcaccatt
     8341 gaagcagctg ttaccacgct atgcccttgt tcaaaggaaa tcagtgagta ttctgcacat
     8401 aaccaacgtg gcatcattac agtgaaagtg tatctcgata aaacggcaac acttccagaa
     8461 gattataagg aagttatttt agatgcaatg gaagccaatg caagctctat gttgtatcca
     8521 attttaaaac gtccggatga aaagcgcgtg acagaacgtg cttatgagaa tccgcgtttt
     8581 gtggaagatt taattcgttt aattgcggca gatttagtcg aagtctcttg gttagaaggc
     8641 tttgatattg aatgtcgtaa tgaagaatca attcatcaac atgatgcatt tgcgaaattg
     8701 aaatatcgaa aataacggga tggactaaaa aaatttaatt attttttagt cattaatgaa
     8761 ccataaaacc atgataaaga ctgggaaagc taatgtccca gtcttttcct ttttgaatca
     8821 gtacaataaa cttgcttcta ttgttgaata cggaaagtaa gtttattcac gactaactca
     8881 ctttctcatt caattcatta agatctatta aacggtcagc ttgtttagcc tgctcaatat
     8941 tatgtgtgac aagtacaatg gtcttattat cagtatctcg caactctcgt atgaactcaa
     9001 aagcgatgtc agcgagtttt ggatcaagcg caccagtcgg ctcatctgct aaaatgatgt
     9061 cacctggttt taaaattgtt cttgctaccg ctacacgttg ttgctcgcca cccggtaaag
     9121 tattgatttt gtcattcaat aatgtatcaa tttcaagttt ctgtaacact tgctgaattt
     9181 tgtctagctt ctctttcttg ctgattttga catactccaa cgcaagtaat aagttgtctt
     9241 ttacagtcat atcagaaatg agcgcatagg attgaaataa atagttaatc gtatgtcttc
     9301 tcaattttgt cgctgtagct gagttaatct taggaatcgc ctggttgtaa attttgactt
     9361 cacccgtttc tatcgtctct agaagcccta tcatattgag caatgtcgac ttcccacaac
     9421 ctgatttccc aacaattgca acaaattctc cttgatgtat atcaagtgaa aaatcacgga
     9481 taattgttct acttccaaat ttcttcgtta tatgattgat ttcaattgct ttcattatga
     9541 tttctcctta attgtaagaa gtaattgttt aatatcatta cgcgacatat ataggtaaaa
     9601 aatgagtaac tgaatcgcac cgtaaattgt aatagaaaca atccctgatt ttgacggcca
     9661 gaataaaacg acaagcatat caatcgccca aatacttaaa atcaaaatca tcggaaggct
     9721 gtacatttta aagaaactga agcctaaaaa ttttgaaata taaagacgtt cataatgtgt
     9781 taatcgatac acataagcca atgatatgag taaaagaatg gatagcaata atgcaccaac
     9841 gataaaacta ccaaaccaaa cgatggtttc tgctaagtct ttttgaagtc catcaataaa
     9901 gacttgaata gggacaaatt tcagttcatt gtctgccaaa tgatattgtt ccaagtagct
     9961 tttcgtagta tagttttctg ctgtctttcg atccttaaac ttgatataac tattcaaatc
    10021 attacttctc aaactttctg attgcaagta attcatattt tctggtgtaa tgatataaat
    10081 aatcggatct tttaccatca cttcgtcatt cggggtattg ttccaactaa atattttttg
    10141 ttgaaaatgg taagttataa atttaaaacg attttcctga ttatatgcag tcggaatatc
    10201 attttcattt cgttcagttg actcactttc tttaatccat tgttcaaatt tttctttctg
    10261 ctgtttcgta taactatcag gaattaaaaa cacttttgta ccactctcag cattatcgat
    10321 atattgctgt gctacattga ggtgaatatt ctttaaataa ttaggtgaaa atgtcatata
    10381 ccaaaatgct ttttctggca cattttcata aatcgcttgc tctcgataat attcaagcaa
    10441 gtctttatca aaatattcag aatgcgcaat gaatacgtta gcatctttca cgatagattg
    10501 ataccaatga taaatgtcgc gatctagcgc attagatttt ccagctatgg tcgaaagatc
    10561 ttcccctgtt tgcatatctt ttaatgtata gtaattagaa acattttccc attgtttcgc
    10621 aatccgaaaa ttttgtacga cctctttgat tggttcatct aaacggacac taccgaatac
    10681 gagtaaaata cttagaagca cataacctaa tgcgcccatg ccatagagtg tacggtgagg
    10741 cactttccct ttaattgcat ctaccggttt cattgagaac acagtcaaca ccgctatgcc
    10801 agtcatgaag agtgtgagtg ttaaattgat gacgccacct aaaaagaaat aagacaaaac
    10861 ttttaatgtt atcgactgcc agccactcac ataccataaa ataactgcaa aaacaggaat
    10921 aatcaggatt gaaaacacca caaattgacg caacacttta ttcgcaactg cccattttga
    10981 ccaccctaaa agcgttaaat gccctaaatt tttaaggttc gcaactgtaa cagcaataaa
    11041 taatataaac actgctaaca tcgtcatgat taataaacat gacaatacaa cagtgactgt
    11101 attgtccatt ttagcaacgc cgccattaat cgtggtcaaa gccgtttcag attgatgcgt
    11161 cactacagac aaagctttga tcaactgttt gaattgttgt tctgaaccat aaactgtgta
    11221 tgagccattg atactttttg tcgtatgaat ataagactgc aaatcgacaa tagaatgcct
    11281 tttagcaaaa tatggcgtat tgaattcttt aatgttatga atagaaccat taaaatctcc
    11341 aatcgttgct ttttcatttt tactatttaa taattttact atatcctgtt gtgacatgat
    11401 tgtatgatca tacagttgaa tttctggaaa ttgttccgct ttacctgtta aaccaatcaa
    11461 ttcatgattt gtctcttcat caaccgtcga tgtcaaaatc aatagttcag gaaactgttt
    11521 taatacatcc atgacatctt ctttttgctc gatggtgata cggtttaaat aaaactgatg
    11581 ctgattagcc gaattttgta cctcgtccca tttttcatca taccattcac ccaaacgaaa
    11641 agttgtcatc atcagaataa tgatggcttg tatagcaact aatgcaaaga tgagataccg
    11701 tatctttcct actaattgta tatttttcat ttattctcac ctattgtgct tatctacaat
    11761 tccaataagc tacagccgat ctccatccaa catattgttt tgccactgct ttaacacctg
    11821 gtcttttcca accagaaaaa gttgaattag ccgttgccga gtgtgtaaat ctacctgttt
    11881 gaactataga ataactgtaa gtaaaaaacg ttcttccata ctcccaatgt attttgacac
    11941 catgaaatgt tggacttttt aatttcatat tttctacctc ttaaaacaga attaataagc
    12001 gcttacattg acattatact acattatcca ctaaactaaa taattatttt atttagttta
    12061 aaataatatt aggattcaag caactttata gtcgtatacc tttgtcaaac acataaaagc
    12121 cattaattat tcacagaaaa tgaattttaa tggcttcata aatcgtattt acttattttt
    12181 aaaactttac tcttctttcc ctaatgcacg atagatggct ttggcaacac cgctgttttc
    12241 attcgaatct gtcacaaatg ttgcgatatc tttcaattct ggcaaggcat tttccattgc
    12301 gacggcaacg ccagcacgtt ctaacatcga tttatcattt aagttatcgc caactgccat
    12361 cgtatccgcc atatcgatac cgagttgttc agcaatggct tgtaaggcta gccctttttg
    12421 tgcatcaata tgtgtaattt caatgttacc gagtgacgat gaggaaactg ctaagttgct
    12481 actttctgat aattgttttt tcacacgctc aattttagct aaatctttgt cgtacgccaa
    12541 aactttcatg ataagttcac caggtacaga ttcgattttg tcataattat caacgacttt
    12601 taatgttcca agatcgatgc gatgttgaat atgctttctg attttctcta catcgccttt
    12661 ttgacctgag tgtttcgcaa tatctaaata tatggctaaa tctttttcgg ggtcttctgt
    12721 ataaatacca aagttcgtat acacttgata gtacatattc tcattgttta atgtttgtcg
    12781 aatgcgttgg tacaaaccgt gattcaaact ggacgtatgt acaatgtcaa aactttcatc
    12841 tcgcacttct gcaccgttca aacaaatata tggtactttt aaccctgtcg gaataattgg
    12901 atcgtttgct tcataaaatg cacgtccagt cgcaatgacc actgtcactc cttgagactg
    12961 cgcatattga atcgcctcaa cattttcttt tgatacttca tgagctgcat tcaacaatgt
    13021 cccatccata tctgttgcta tcagtttcac catctttatc cctctctcta cttttcgttc
    13081 ttcctttact cgttttaaat ataatctcat tttaacaaag ttacataagg aagtaccgta
    13141 aaatgaattc ctatcacgct tcttaccatt cgctcatata gagaaatcac actttgaaat
    13201 ggtaaaacaa tgacttaatt cttttgtcgt tttttataca agcgtaatgc tctaaaaaat
    13261 tggcgtaata tttctccaca tgaataagcc aacactcctg acacaacaga cgcacggtga
    13321 ttcattcgac tatcttgaac gagattcatc aaactcccca cacatccccc ttttggatcc
    13381 atcgccccaa aaacaactgt atcgacacga ctcattacaa tcgtgcccgc acacatcaca
    13441 cacggctcta atgtgacata caacgtgcac ccttctaaac gccacgtccc tagttgtgcg
    13501 gctgctcgct ccatagccag atgttccgcg tgggcggttg ggctttgatc agtttctcgt
    13561 aaattgtgag cacgtgctat aatttttcca tttttaacaa cgacagcacc aattggcact
    13621 tccccttttt tagcagcttt tctcgcctct tctagcgcaa ttgacatata atattgatga
    13681 cttgtcatac agaaatagcc tcacttatgt taaaatttat aatactgaat aaataaaata
    13741 atactggagc gaaatatatg aaaaaaccgt ttatcgcaat tgaaggtcct ataggcgttg
    13801 gcaaatcttc attagcacac cagttgagtc aatcttatca cttttatgaa gcgaaagaaa
    13861 ttgtcggtga aaacccctat ttgtcagatt tttatagtga tatttcgaaa tggagttttc
    13921 aaactgagat gttcttttta tgccaccgtt acaaagatta tcaagacctt gcagaacaca
    13981 cagatggtat agtcagtgac tatcatattt ataaaaataa aatctttgca cgtaatacgt
    14041 taaatgatgc agaatacgat aaattttcaa gaatttacga tattttaaca gaagatctca
    14101 tctcaccaga ttttacggtc attttagatg cagatttaag tgtactcaaa caacgtatcg
    14161 ctaaacgtga tcgtagtttt gaagccaata ttcaagatag ttatctattg aaattaaaag
    14221 aagattatgc aaattactat cattctttaa aaagcgaagg acatgcagtg ttatgggtgg
    14281 atacgaccga ccttgacttt gtccaaaatg aagcagatta tacatatgta tttaaccaaa
    14341 ttaatgaact cattggaggc cataatcatg aatcaatata atataccctc aaacgcgatt
    14401 attaccattg ccggtactgt cggtgttggc aaatcatctt taacccgcgc aatagcagaa
    14461 aaacttaatt ttagaacatc ttatgaaaat gtagaacata atccctattt agataaattt
    14521 tatcatgatt tcaaacgttg gagctttcat ttacagatgt actttttagc agaacgcttt
    14581 aaagagcaaa aacgtatgtt tgagtatggg ggtggctttg ttcaagaccg ttcaatttat
    14641 gaagatgtcg atatctttgc aaagatgcat gtagaacaag gtacgatgac gcctgaagat
    14701 ttcaaaacat actccaacct ttttgaagca atggtgttaa caccctattt ccctaaacct
    14761 gacgtcctca tttacctcga gtcagattat gaagcagttc ttgaacgcat ccaagcacgt
    14821 gggcgtcaaa tggaaatcga aacaaatcct gaatattggg aaatgctgtt ccaacgttat
    14881 gagaattgga ttaaccaatt taatgcttgt cctgttgttc gtgtaaatat taatgaatat
    14941 gatttattga gtcaccctga atcggtcgat gtggtattga aaaaaatcgg tcatgtaatc
    15001 catacctata gacaagtcga tcaacgttca taaatgtttt aatcaacggg tctttgtggc
    15061 cgacatattg cggctcgcgt tcctagttgg ttcacttcaa ctaaaatcga cttaattgaa
    15121 gcgtacatga gatggaggcc gaattgggtt ttagggcagt acaaaaacct catgtgtaat
    15181 aaaaatttcg ctgtactgcc cccgcaaggc gaactagact tctcaaatgc aaagtgattg
    15241 agagattaga cagctactgc gttaaacagc agtcactatt aaacatcaga aatcgcgtta
    15301 agcctttgtt ttggccctca ggaatctcac ctcgctttgt agtcgctatc ccacagctct
    15361 ttattaatgc ttgtcccttt atcattttaa acatttctaa atcaaatatg taagaaggat
    15421 gaaataactt ttgaagatat cgtctttctt ttatttattc aaacactcag attgtaaaat
    15481 gaacaggctg gaagattttc cagcctgttt tctttatgaa tctgttttga atgtccacct
    15541 cactacttac gaaatgaaag caacacgcaa ttttattggc ttgatttatt ttgctttggg
    15601 caaaacgttt tccaataaac caacgtggtc aatgacgaca tctgccgctt caaacttcgc
    15661 ctcttgtcct aatcctgtac ggacgcctac attcagcgca cttttcatat ttttaccggt
    15721 caacatgtca ttatctgtgt cgcccaccat tattacatct tctccacgca caccgcgatt
    15781 ccataatggc tgaagtaaac gaatatccgg cttttcatac tgtccatcat tcgttgagat
    15841 gaccatatca aatacatccg ttaattgcgt ttcttccaaa aattgcgtca cgcctgtatg
    15901 attatcacta gttacgatgc ctaacgcgta accttgtgcc tttaaacgtt gcattaacga
    15961 tgctacacct tcataaaggt tgatttcagg tacacgttga ctgattaaag tttgactacg
    16021 ttgtgcgacc caatcagcaa tattttcatt cgtaaactgt tgaagaactg caattaaatc
    16081 tttcaacgtc cccccattca tgacactatt cacttcgaac cgttcatctt taatcccgat
    16141 tgcctgatat actgctagac gatcttcaag cttaaaatgg tcacagatat cattaactaa
    16201 ttgtatccct atttttgtcc aactatcatc aaaatgtatc agcgttccat ctttatcaaa
    16261 taaaatccac ttcggtgaaa tcattttttt gcctccattt atgtctttgt atcaaactaa
    16321 aagtgaaaaa ataacgcatt gactttccaa aaagactctc ttgaatcatt ccatcacatt
    16381 ctactatttc ttatgttaca aaatctatct attaatgcaa ataacatctc aacatttatt
    16441 caatttttca taaacagtta agaatcattt aattttttta ttttatatat gatgtaaaat
    16501 aaaatagaag gagtgatgaa catgaaaaaa ttaaaacaaa aaaaacgatt aacatcacta
    16561 ttattagcca ctacaatgct tttaggtatc atgaatactg gcgttagcca tgctgcttca
    16621 gacgaaaatc aagcggaatt aaaattagcg acgcacaatg tttatatgct ttctggtttc
    16681 ctttatccta actgggggca aagtaagcgt gcagatttaa tttcaaaatc taaatatata
    16741 caagataatg atgtcgtaat tttcaatgaa gcattctatc ctgcttcagc aaatcaactg
    16801 ttcaataatc taaaatcttc ttatccttat caaactgcgg tacttggccg ttccacttca
    16861 ggatgggacc gcactgaagg tcattattca agtacgactt ttgaaaatgg tggtgttgct
    16921 atcgtaagta aataccctat tagagagcga attcaacata tcttccagca cggatgcggc
    16981 tttgataatg atagtaataa aggctttgtc tatactaaaa ttgaaaaaaa tggaaaattc
    17041 gttcacgtta tcggtacaca cacacaatct gaggatacac gctgctcagt aggtcaagat
    17101 agagcaatta gagctgaaca aatgaaagaa attagcaatt ttgtaaaaag taaaaatatc
    17161 cctaaagatg aagtagttta catcggtggt gatatgaatg taaataaaaa tgctggaaat
    17221 ggtgaattcc aagatatgtt gaaaaactta aatgtcagcg atgtaactta tacaggtcat
    17281 tcaagcacat gggatcctca atctaactca attgccaaat acaattatcc taatagtgcg
    17341 ccagagtatt tagactatat ttttgtagat aaagaccatc gccaaccagg ccaactcatt
    17401 aatgaagctg tagctgaaaa atcaccaact tgggatgttt ataaattccc atacctttat
    17461 gtctacaatg actactctga tcactatcca gtaaaagcgt atagtaagtc atagaaagtt
    17521 taatagtcgt attgactctc atagactgtg gttataggat taacccataa atatactcac
    17581 aataccttta ctagtaacaa aacaagaata aataacatac ccgtatataa ccgagatgtt
    17641 tcgccatcca tcacgaagca tctcggcttt atattgctta aaagtattta gaaaatgtca
    17701 ttgaatggca tagataaagg tatgcttact atttaaatac actaaaatca cctttaaaaa
    17761 atttaggctc tttcctattt cagtcagacg gggaatcatg tgtcctgttt tgaatataaa
    17821 aagagcgcaa tgctttcctc cactactcgt aattaagaaa atcatgcgcg tatagctcac
    17881 attatgtcga tttcactaga gttttatcac ttataaagag aaggttgaag aacagaaata
    17941 caaagtagct gtatttttat tttaccttca tccaatgatt atccttaaaa cttaataaca
    18001 gatgatttca agcgtgtata gcacattgat gttaagatga tttttatgat tgcagaaagc
    18061 accacatatc aatgcgcaaa ccatcttcaa tcattttaat agcgtttagg ttttaaatcg
    18121 agttctgaat tggactcggg taaaacagtc atgaactgta ttgataaaat gcttaaaaaa
    18181 ctagaaaccc cgtcatatca ggattcctag cttttcattg ttattatctt tcataatgcg
    18241 gaaccacaac gcgccaaccg tgtggatcct ctaattgtcc actttgaatg cctgtataat
    18301 gatcatatag tttttgcgta attggacctg tttcattgtt attaatcacg atttcttctt
    18361 ctctatattg caacgtaccc actggcgaga taacagcggc cgtacctgta ccaaatactt
    18421 ctgtcaaggc accgctttga tgtaattcat acaattcatc aatagaaata cggcgttctt
    18481 cagtttcata gcctaatgat gcagctaatt ctaatactgt tttacgcgta ataccaggta
    18541 aaatactacc atttaatgac ggtgtgacca ctttcccatc aatgacgaag aagatgttca
    18601 tgcttcccac ttcttccaca tatttttgct ccacaccatc taaccataat acttggtcaa
    18661 agccgagttg atttgcgttg gcttgtgcga gtaagcttgc tgcatagttg ccagctactt
    18721 ttgcaaatcc gacaccgcca cgtactgcac gtacatactc atcttctacg taaattttcg
    18781 ttggacgtaa tgaatctccg ccataatatg aaccagatgg cgataaaatg attaataagc
    18841 gatactcatg tgaaggatgc accccaagag cgccttgtgt agcaaaaaca aatggtcgaa
    18901 tatagagcga ttgaccttct ccactcggca cccaatcacg atcgatatcg acgagttgtt
    18961 ttaatccttc taataataac gcctcatcaa tttgtggcat ttttaagcgt tctaatgatt
    19021 gattaattcg tttaaagttt tcctcaggtc taaacaagac aacttcgcca tcatgcttat
    19081 atgcttttaa tccttcaaaa acagcttgtc cgtaatggag actttgtgca gctggtgaca
    19141 gttcaattgg accataagga ataatcttta aatcgtgcca tccttctgct gttgagtatt
    19201 caaaacttaa catgtaatcg gtaaagactt caccaaaagt gagttgattc aaatcaggct
    19261 tttcttttaa tgtttggctc acttttaatt cgattttttc tgacatgatt attcctccca
    19321 tatgtaaaat ataatattaa ccattatagc aatgactgac ctataattca atgagtattc
    19381 cgaaaattaa aataattaat gtggatttta attcttttta tacaatgaca cttataattc
    19441 tcctttttta ttgatataag tataattccc ttcaaatctt ttttaatttc ttatttttca
    19501 ataaacatgt tacattaaat aacttgttta taaaatgtac atcatgtgag acagcaataa
    19561 tggtcccttc aaaatctaat aacgcatctt ctatcgtttc tttgattcta tatctaagtg
    19621 attagtaggt tcatctaaaa gtagcagtcc agttggttta atcaatgatt gagcgatgcc
    19681 aatttttgta cgttcacccc ctgataagtc accccaattc atttcaagta aatattctat
    19741 atttcatccg tgtacaactt ttctgatttg agaatctatt tcatcaccac ctctttcctc
    19801 aaagtaatat tgtaattctc cat
//
LOCUS       DANHOL010000034        19702 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.034, whole genome shotgun sequence.
ACCESSION   DANHOL010000034 DANHOL010000000
VERSION     DANHOL010000034.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 19702)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19702)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19702
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.034"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(67..273)
                     /locus_tag="PTC08_000868"
     CDS             complement(67..273)
                     /locus_tag="PTC08_000868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682389.1"
                     /translation="MQLMLAFGDLLLYFEATSLAAGIFSLWHLNADDAKLQKVGLIWF
                     IINLLNIFVLTPLIILVLFFGISF"
     gene            complement(869..2011)
                     /locus_tag="PTC08_000869"
     CDS             complement(869..2011)
                     /locus_tag="PTC08_000869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional cystathionine
                     gamma-lyase/homocysteine desulfhydrase"
                     /protein_id="HDK5682390.1"
                     /translation="MNKKTLLIHCGNTTDDYTGAVTTPIYQTSTYEQDAIGELRQGFE
                     YSRTANPTRSSLESVIADLEHGNYGFAFGSGMAAISAVIMLLDQGDHIIVGSDVYGGS
                     YRAMTRVFTRFGIEFDFVNTTDVQNIEDKIKDNTKMLFIETPSNPLLRITDIQAVSEI
                     GKQHELMTVVDNTFMTPYYQTPLSLGADIVVHSATKYLGGHSDVVAGLVAVKDETLAE
                     RIAFVQNSTGGVLGPQDSYLLIRGMKTLALRMEQIERNALAVVEMLNQHDKVTKVYHP
                     SQPSHLNYDVHQAQADGTTGIISFEVADVEKAKFLVRQTKYFTLAESLGAVESLISVP
                     SLMTHASIPADIRAKEGIADGLIRLSLGIEDTDDLVEDLKQALDQL"
     gene            complement(2004..2909)
                     /locus_tag="PTC08_000870"
     CDS             complement(2004..2909)
                     /locus_tag="PTC08_000870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase family protein"
                     /protein_id="HDK5682391.1"
                     /translation="MRNFDLIGRTPLVQLEHYSTDRVQIFAKLEMHNPGGSVKDRLAK
                     YLIERAMEDGRLHPGDQIVEATAGNTGIGLAIVANHYDIKCIIFAPEGFSEEKISIMR
                     ALGAEIHRTPQAEGMLGARQWAESYADETGAFYTNQFETRNNPAAYRDTLAVELIEAL
                     PDLDYFVAGAGSGGTFAGVAEALQPHDVKSIVVEPPGSILSGQEKGRHDTEGIGVEVW
                     PQFLKREWIEAVEVVPDEVAFQHVKDLARYEGILAGSSSGAALEGAIRAASRLEQGTV
                     VAIFPDGSDRYMSKKIFQYGGDLNE"
     gene            3192..4517
                     /locus_tag="PTC08_000871"
     CDS             3192..4517
                     /locus_tag="PTC08_000871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxylesterase/lipase family protein"
                     /protein_id="HDK5682392.1"
                     /translation="MELHTPKGTIHGERHTGYEEFKGIPYAQPPVGALRFKHAQLLLT
                     WPEDFQATSFGPVPIQPPNSLESFFDTHVQDYPQSEDCLTLNIWRPATPAHQPLPVIV
                     FIYGGSFVNGHSAQALYHPHEIVNRESVIVVTLNYRLGALGFLDWSTINPEWDANNGL
                     SDQICALQWIRENIAHFGGDPEHLTLMGQSAGAMSVAAMLRMPTVRPWIKNAVMLSGT
                     LHLESPQVASDKADAFAALKAQHYASTPWHELGAQGILALMARHQMQYGPSKGLELLY
                     QPVATDDIELDYRHVNVPVLLGHTTAEGDIYIKNEQKKLAPQQFQRVIQRLEGPVPPL
                     EDIETAQQQRDLITNWHFKAPFQQLYQALSAVTPTWQATFNWSRGDHPDYASAYHILD
                     MIFWMGRLDILAAHGLEVTARETELRKRMIHDLCHFAQHSTLDGNRFYE"
     gene            complement(4667..5995)
                     /locus_tag="PTC08_000872"
     CDS             complement(4667..5995)
                     /locus_tag="PTC08_000872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HDK5682393.1"
                     /translation="MSQRSQWKSSTGFILASAGSAIGLGALWKFPYMAGMFGGGAFLF
                     MFLAFTILVGLPLLIMEFAVGQLGRTYTTELFGQLTGRKWLNGIAWIGNLAVFVLFSF
                     YSVIGGWIIVYLGFVLAQLFHIVPTHLHDLQFQAIISQPLYVVTGQAIFIALTCGIVM
                     RGVQQGLEKASKLMMPLLLVFLIIIVVKTLSLDGAMDGVRFLFQPRVSEINMESMLFA
                     LGQSFFALSLGTTGMMTYASYASTDMPIKTSALTILIMNIAIAILAGLAIFPALETFG
                     YQAKEGPGLLFIILPLVFEKIQFGTLFYAIFLVLFLFAALTSSISLLELNVSNFTRNN
                     NRKRPTMALIISLAVFIVGVPATLSFGPLSHIQFGAGSIFDNMDFVFSNILLPIGALA
                     STLAIGYAMEKVRLKTGFGNDPLKLFAIWYIFIRYILPVVILLVFILQLV"
     gene            6179..6367
                     /locus_tag="PTC08_000873"
     CDS             6179..6367
                     /locus_tag="PTC08_000873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682394.1"
                     /translation="MSQKLKERIYLIAIIVSTLCVLSSVLFGLSPTITATVTFISIIV
                     FAILYFVVPNKQQNRKLR"
     gene            complement(6560..7249)
                     /locus_tag="PTC08_000874"
     CDS             complement(6560..7249)
                     /locus_tag="PTC08_000874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000858967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HDK5682395.1"
                     /translation="MNTKILVVEDDAAITHLLDVSLTLDYYKVITATNGKDADFQIRS
                     KAPDIILLDLGLPDIDGLELIKRIRQTFDIPIIVISARLDEQTIVEALDNGANDYMTK
                     PFNVDELRARIRVVQRLENMQNQKEIVFENGPLVVSYQAKTAQIDNQLLNLTPHEFAL
                     LELLCRHVGKVLTYDTILKAIYGYVNQSEMPSLRVHMTSLRNKLTQAHPESKQLIITR
                     PRIGYQMQYWQ"
     gene            complement(7263..9887)
                     /locus_tag="PTC08_000875"
     CDS             complement(7263..9887)
                     /locus_tag="PTC08_000875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase KdpD"
                     /protein_id="HDK5682396.1"
                     /translation="MERHLTIKRGALTIYLGYSPGVGKTYEMLSNAIDAYHEGADIKI
                     GYIEPHQRKETQALAEQLPVIQTKSKNHGSHTFHYLDVDQIIEDDPDVVLIDELAHTN
                     ISKERHEKRYMDIEEILSHGIDVHTTLNIQHIESLSEQVALLTGVKIKERVPDQFIMS
                     SDAIEVIDISPKQLINRLKAGKVYKKERLDTAFSHFFTYENLTELRELTLRTAADMMS
                     QKEHLYKKNTDITPHVAVAISGSISNETVIREARRIANREHAQFTAVYIDVFDHEGKQ
                     YANNSQVHQNLMLAQSLGASVKVIYDNQIASGLDDWCKSQKVTKLVIGQHMNDKWHTR
                     LKRPLIDQLLDLKHHYKIEIVPIKHIQMKAKPERQQQHMQQKRWTVDIFKMIAIQAIC
                     VLLGLWIYSTGKGEQDTIILLLFLLGIVVLSMWTQSYLIGFFAAILNVLVFNFFFTVP
                     RFTFEVYRFDYPITFTISIIVSIVTSGLLKQIKHQYIVTKHQLYRTDILLQFNDSIKQ
                     TYTIPDLLVNARHQIQHLLKQEVTIYLVEDEKISKTIPVEGPQTNDSRHQQALSWIIK
                     NQKRAGATTDTFPGIHYLLIPIGTKPVKAIVSIHFSEAYIIDSYDNSILESMLNEMSL
                     AVENLSLLRQTRESMLRAEREVARAHFLRSISHDIRTPLTSIIGNLDVLLLNGKEMPR
                     AEQQQLVSRSFDEAQYLHMLVSNILSLTRLEHSNMKLNRQLYLIEELVEEIESVLERR
                     RLNKQVKVSALHEICFVDIDSQLILQAVFNLIENALKHTPPETPITLRINKNEPHILF
                     EVIDRGPGLSDEEQQTIFQPFEKHQLFKDNKKDSMGLGLYLVQAILQKHDSQLKYRQN
                     EPHGSIFYFNLPFEKNTN"
     gene            10055..10135
                     /gene="kdpF"
                     /locus_tag="PTC08_000876"
     CDS             10055..10135
                     /gene="kdpF"
                     /locus_tag="PTC08_000876"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: protein motif:HMM:NF021144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="K(+)-transporting ATPase subunit F"
                     /protein_id="HDK5682397.1"
                     /translation="MISILGLIVIVLIGYLVYALIYSEKF"
     gene            10161..11837
                     /gene="kdpA"
                     /locus_tag="PTC08_000877"
     CDS             10161..11837
                     /gene="kdpA"
                     /locus_tag="PTC08_000877"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit A"
                     /protein_id="HDK5682398.1"
                     /translation="MEIVIFLITFFLCAFLLSRYLYSVALLTPTPADKVFSGVEKGIY
                     KVLGTQLEHMSGKTYLKHFLLFNGLMGALTFVLLLIQQWLFLNPNHNLNQSVSLAFNT
                     AVSFLTNTNLQHYAGESGLTYLTQMMVITYLMFTSSASGYAVCIAMLRRLTGMTDIIG
                     NFYQDMVRFLVRVSIPLSFIVSLLLISQGTPQTLKGNLTLHTITGKVQHIAYGPMASL
                     ESIKHIGTNGGGFLGANSATPFENPTVWSNYIEMLSMMLIPGALVFLFGRMLTKNGKH
                     IHAHAYVIFGTMLLFFLVCFVIALIAEYKGNVVLAHLGVIGPNMEGKEVRFGPGLSAL
                     FTAITTAFTTGTVNNMHDTLTPIGGLVPIVLMMLNAIFGGEGVGLMNMLIYVLLTVFI
                     CSLMVGKTPHYLGMKIEGREMKLIALTFLIHPVLILIATALAFIVPGASAAITNPSFH
                     GISQVLYEMSSSAANNGSGFEGLSDNTAFWNISTGIVMLLARYTPIILQVMIASSLVN
                     KKAYQKSDQTIAIDKPFFGVSLTIFIILLSGLTFLPVLLLGPIGEFLSLK"
     gene            11853..13877
                     /gene="kdpB"
                     /locus_tag="PTC08_000878"
     CDS             11853..13877
                     /gene="kdpB"
                     /locus_tag="PTC08_000878"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000852430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpB"
                     /protein_id="HDK5682399.1"
                     /translation="MKQSSHVLNRAIVRQAIKESFIKLNPVSLIKNPIMFVVEVGMVL
                     TLIMTIVPQIFTDGAMSRLYLFTIFIILFFTVLFSNFSEAIAEGRGKAQANSLRETKS
                     HMIARRIVNAEVYETVDASALKRGDRILVKSGEMIPSDGTIIKGIATVDESAITGESA
                     PVIKESGGDFSGVIGGTTVTSDWLIIEVDSEEGATFLDKMIALVEGAQRKKTPNEIAL
                     FTLLMTLTIIFLVVILTLYPIAQYLNLNVPITSLIALTVCLIPTTIGGLLSAIGIAGM
                     DRVTQFNILAKSGRAIETCGDVDVLILDKTGTITYGNRLAESLLPVREEWYDRLLVAA
                     YESSVEDDTPEGKSIVTLAKRSSVQLPEEVKGDYRPFKAETRMSGIIIGERSVFKGAP
                     NSMLKYVKQQGGVIPSNIEALVTEVSSKGGTPLIVVENQTILGVIYLKDVIKEGLVER
                     FQELRQMGIETVMCTGDNELTAATIAKEASVDRFIAECKPEDKIKVIKEEQEKGHIVA
                     MTGDGTNDAPALAQANVGLAMNSGTLSAKEAANLIDLDSNPTKLMEVVKIGKQLLMTR
                     GALTTFSIANDIAKYFAILPAMMMVTIPEMNRLNIMQLHSPESAIISALIFNALIIAL
                     LIPIAMKGVRIKGASTETILMKNMLVYGLGGMIVPFIGIKLIDLLIQWWL"
     gene            13888..14448
                     /gene="kdpC"
                     /locus_tag="PTC08_000879"
     CDS             13888..14448
                     /gene="kdpC"
                     /locus_tag="PTC08_000879"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="K(+)-transporting ATPase subunit C"
                     /protein_id="HDK5682400.1"
                     /translation="MKTIRSSIGLVVMTMILCGLIFPLAVTAVGQTLFHHQANGSLVT
                     QNHQIVGSELIGQQWDEPQYFHGRVSAVKYNMDAAMIKGNGVASGSHNYSNGHPELQQ
                     RVAALKQINGHTPIDAVTESGSGLDPDITVNNAKQQVARIAERRNLSTEQINQLISNQ
                     AHQGTLYDDDVNVLALNLALDRMSGH"
     gene            complement(14565..15205)
                     /locus_tag="PTC08_000880"
                     /pseudo
     CDS             complement(14565..15205)
                     /locus_tag="PTC08_000880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002450207.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
     gene            complement(15471..16286)
                     /locus_tag="PTC08_000881"
     CDS             complement(15471..16286)
                     /locus_tag="PTC08_000881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="kinase/pyrophosphorylase"
                     /protein_id="HDK5682401.1"
                     /translation="MTTTPQLTIFIISDSLGETAQRMVHAVMSQFPKLTQIEMKKFSL
                     IESEEALLNVLKLAKERQAIVVTTLVTDHFNALGQAYALEHEIPYIDYMSPFMQHVQA
                     ATGHVPVKEKGKIRELDEDYFKRIDAIEYAVKYDDGKHFTDIEEADVLIVGVSRTSKT
                     PLSMYLANKGYRVANIPLVPEIGIPYDIVKDKKLKVIGLTASPEYIMSIRTERVKVLG
                     MKGKQAYYNDLQRIKAELAYAEEVFKQLNATVINTEYRSIEESAFYIEKILQK"
     gene            complement(16288..18912)
                     /locus_tag="PTC08_000882"
     CDS             complement(16288..18912)
                     /locus_tag="PTC08_000882"
                     /EC_number="2.7.9.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate, phosphate dikinase"
                     /protein_id="HDK5682402.1"
                     /translation="MTKYVYAFDEGQKNMKDLLGGKGANLSEMKRLGLPVPDGFTITT
                     AACIEYLERGDQLSDEVKTQLQKQLEAFSGRTNKAFSSDENLLLVSVRSGAKISMPGM
                     MDTILNLGLNDENVEKLARKTNDARFAYDCYRRLLQMFGEVVYGIPMTAFDTYFDNYK
                     ATHGYQNDADIPAEGLQEICEHFKTVYIEEVYKPFPQNPLDQLLEAIEAVFKSWDNDR
                     ARVYRDLNDIPHHIGTAVNVQEMVFGNSGPQSGTGVAFTRNPVTGEAKLFGEYLLNAQ
                     GEDVVAGIRTPQDIATLHDQMPHVHEQFVAVADQLEQHYQDMQDIEFTIENEKLYILQ
                     TRNGKRTAKAAMQIAVDLVEEGVISKKDAMTKVDVKSIDTLLHPTFEAQALEAATIIS
                     KAGLPASPGAATGKIVFSAEEAKRQAEAGEKVILMRPETSPEDIEGMIASEAIVTTHG
                     GMTSHAAVVARGMGKCCVTGCADLEINTREKTVTYANGQLFEGDEISVDGAQGDIYAG
                     IVETTSAEHSEAFEQFMQWTEEIARLGVRMNAETTPDIEAGYQFNAQGIGLVRTEHMF
                     FGAERLVEMRRFILSSDDETRTQALNRIRTYQTEDFEQIFRLSGERPTIVRLLDPPLH
                     EFLPKSDEEVDSVAKQLNISAAQLKQRIAELHETNPMLGHRGCRLAITYPELYVMQVE
                     AMMKSVAQLKEEGITCHPEIMVPLVSTVAEFKVLKAQILDAIQQIETDTNQSLHYLVG
                     TMIETPRACVIAGDLAKECDFFSFGTNDLTQLTFGFSRDDAGKFINDYLNQHILAADP
                     FQTLDVDGVGELVRNASEQAKAANPNIKIGVCGELGGDPKSIHHFNRMAIDYVSCSPF
                     RVPGAKLAAAQSVVESEG"
     gene            19040..19312
                     /locus_tag="PTC08_000883"
                     /pseudo
     CDS             19040..19312
                     /locus_tag="PTC08_000883"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166908.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
BASE COUNT         5750 a         4131 c         3764 g         6057 t
ORIGIN      
        1 taaacttatg catcacgata aagcttgata cgaccttttt aacattacaa ggtgcgattt
       61 cggtcgttaa aaacttatgc caaaaaataa taccaagatg attaaaggtg tcaaaacaaa
      121 tatattaagt aaattgatga taaaccatat taagcctact ttttgtaact tcgcatcgtc
      181 tgcgtttagg tgccacaatg aaaatatgcc cgcagctaat gacgttgcct caaaatataa
      241 taataaatca ccaaacgcta acatcaattg cacacaaatc agtccaccta ctattaaaaa
      301 taagtaattc aaaacattca cgatatacac gactctgatc ctattcattt atcacgactc
      361 ctgttgaaag tccttaatat ggtttttcat catactataa acctaggaaa caattctgta
      421 acttatcaaa attataacat tttcatatga ttgtgattat atatattagt ttcatactta
      481 taaaaaagtg cgtgcatgaa gataggacat aaaacttttt ggcgctactg ataccgcatt
      541 ggtttaactt gtacgcttcc aggacttgtc ttaactaaat ccagtgtcca cgagggccat
      601 tttcatttgt tgcgtatatc aaaaaagtca tgccatgttc aaaacgagac atggcatgac
      661 gctgtcgaat gtgattgatt ttataaacga aattcataag gatttgagga agactttaac
      721 tttggtacta gctactgttt aacgcagtag ctgtctgact tctcaatgct tgtacttgtg
      781 agaagccgag tcagccttgc gcaggcattt acgacgaaat ttttgttgca caagaggttt
      841 ctgtacgact ccctcaaccc catgtcactt acaattgatc aagtgcttgt tttaaatctt
      901 ctacaagatc atctgtatct tcaataccca atgataatct gattaaacca tctgcaatgc
      961 cttcttttgc acgaatatca gctggaatcg atgcatgtgt cattaagctt ggtacagaaa
     1021 ttaaactttc gactgcacct aaactttctg cgagtgtgaa atattttgtt tgtcttacta
     1081 ggaatttcgc tttttctaca tctgctactt caaatgagat gatgcctgtt gtgccatctg
     1141 cttgcgcttg atgcacgtcg tagtttaaat gtgacggttg gcttgggtga tacactttcg
     1201 tcactttgtc atgttgattc aacatttcga cgaccgctaa tgcgttacgt tcgatttgtt
     1261 ccatacgtaa agctaatgtt ttcatcccgc gaataagcaa gtagctatct tgaggcccta
     1321 atacgccccc tgttgagttt tggacgaaag caatgcgctc tgcgagtgtt tcgtctttaa
     1381 ctgcgacaag tccggctaca acgtcactat gcccacctaa atatttcgtc gctgaatgta
     1441 caacaatatc tgcgccaaga gacaacggtg tttgataata tggcgtcata aatgtgttat
     1501 ccacgacagt catgagttcg tgttgcttgc cgatttcact caccgcttgg atatctgtaa
     1561 tgcgcagcaa tggattagat ggcgtttcga taaataacat tttcgtatta tctttaatct
     1621 tatcttcaat attttgaaca tctgtcgtgt taacaaagtc aaattcaata ccaaaacgtg
     1681 tgaagacacg tgtcattgca cgataagagc cgccatacac atcagagcca acaataatgt
     1741 ggtcgccttg gtctaataac atgataactg cgctgatggc cgccatgcct gaaccgaatg
     1801 cgaaaccgta gttcccatgc tctaaatcag caatgacaga ctcgagcgat gaacgtgtgg
     1861 ggttcgctgt acgtgagtat tcaaaccctt gtcttaactc cccaatcgca tcttgttcat
     1921 acgtactcgt ttgataaatc ggcgtcgtca ctgcacctgt ataatcatct gtagtattac
     1981 cgcaatgaat taataatgtt tttttattca tttaaatctc ctccgtattg aaatatcttt
     2041 ttcgacatat aacgatcact gccatcagga aaaatagcta cgactgttcc ttgttctaaa
     2101 cgggacgctg ctcgaatcgc gccttccaat gcagcacctg aagaactacc cgctaatata
     2161 ccttcgtaac gtgccaagtc tttcacgtgt tgaaatgcga cctcatccgg taccacttcg
     2221 accgcttcga tccattctcg ttttaaaaat tgtggccaca cctctacgcc aatgccttca
     2281 gtatcatggc gccctttttc ttgaccactt agaatagaac caggtggctc aacgacaatt
     2341 gatttcacat catggggttg gagtgcttct gccacacctg caaatgtgcc acccgaacct
     2401 gcaccagcaa caaagtagtc taaatccgga agtgcctcaa tgagttcaac tgctaatgta
     2461 tcacggtacg ctgctggatt attgcgcgtt tcaaactgat tcgtataaaa agcacctgtc
     2521 tcatcagcat agctttcggc ccattgtcgt gcaccgagca tcccttctgc ttgtggtgta
     2581 cgatgaatct cagcgccaag tgcccgcata atcgaaatct tctcttctga aaaaccttct
     2641 ggcgcaaaaa tgatacattt aatgtcataa tgattcgcaa caatcgctag cccgatacct
     2701 gtattgcctg ctgttgcttc cacaatttga tcaccggggt ggagccgacc atcttccatc
     2761 gcacgctcga ttaaatactt ggccaatcga tctttcacac tgccccctgg attgtgcatc
     2821 tccagtttgg cgaagatttg cacccggtct gtactgtaat gctcgagttg tacaagcggt
     2881 gtccggccaa tcaagtcaaa atttctcaac actgtcccct catttcaacc gtttaattct
     2941 tagttaatac atatgaatta taagataaat atgtgtcggt ttcaatgtta atctctataa
     3001 aaatacaaat tatctcaaaa gcaatcgata tggtacgata caattgcaaa tgagcgatta
     3061 aattttgagg tgctcattaa taacgttttc actttaccct tacacattgc catcccatac
     3121 aagaaagcca tgcttacgct ataatgaaag caatcacaca ctacatttca gagtacaaag
     3181 gagagagatt gatggaactg catacaccta aaggcacgat tcacggtgaa cgtcatactg
     3241 gttatgaaga atttaaaggt attccttatg cgcaaccacc tgttggggca ttacgtttta
     3301 aacatgcgca actgctgtta acgtggccgg aagattttca agcgacttca tttggacctg
     3361 tcccaattca gccaccgaat tcattagagt ccttttttga tacacacgtg caagactacc
     3421 cgcagagtga agactgtctc actttaaata tttggcgtcc tgcaacaccc gctcaccaac
     3481 cattgcctgt catcgtgttc atatatggtg gcagttttgt gaatggtcat agtgcacaag
     3541 cgttgtatca ccctcatgaa atcgtcaacc gcgaatccgt catcgttgtt acgttgaatt
     3601 accgtttagg tgcactgggt ttcttagact ggtctacaat caatccggag tgggatgcga
     3661 ataatggctt gtcagatcaa atttgtgcac tacaatggat acgtgaaaac atcgcacatt
     3721 ttggtgggga cccagagcac ctcaccttga tgggtcaatc tgcgggtgcg atgagtgttg
     3781 cggccatgtt gcgtatgcca acagtacggc cttggattaa aaatgccgtc atgttaagcg
     3841 ggactttgca tttggaatct cctcaagtcg catccgataa agcagacgcc tttgcagcat
     3901 taaaggcaca acactatgct tccacacctt ggcatgaact tggtgcacaa gggatattgg
     3961 cattaatggc gagacaccaa atgcagtatg gcccatcgaa aggtttagaa ttgttgtatc
     4021 aaccggttgc cacagatgat atcgaactag actatcgcca tgtcaatgtt cccgtattat
     4081 taggccatac gacagctgag ggtgacattt atattaaaaa tgaacaaaaa aaattagccc
     4141 cgcaacaatt ccaacgtgtc attcaacgtt tagaagggcc cgtgccaccg ctagaggaca
     4201 tcgaaactgc tcaacaacag cgtgacctga ttacgaattg gcatttcaaa gcaccgtttc
     4261 aacaactgta tcaagcatta tcagcagtga caccgacttg gcaggcgact ttcaattggt
     4321 ctcgtggtga tcatccagac tatgcttcgg cgtatcacat tttagatatg attttttgga
     4381 tgggccgtct cgacatttta gcagcacacg gtttggaagt aactgcacga gagaccgaac
     4441 tacgcaaacg gatgattcat gatttgtgcc atttcgccca acatagcaca ttagatggca
     4501 atcgctttta tgaataatgt gacgcccaaa ataaataagg aagcgactcg ggaacaattg
     4561 acgttttccc agtcacttcc tctttatttt tatgtgtagt aatcaatctt tggaagccat
     4621 caaacatgcg tatcactgtg tcgattcaac atgaatgaaa tgcttgttat actaattgca
     4681 aaatgaaaac caataaaatg acaaccggta aaatgtatcg aatgaaaatg taccagatcg
     4741 caaacaattt cagagggtcg ttaccaaaac ctgtttttaa acgcaccttt tccatcgcat
     4801 aaccaatcgc tagcgttgaa gctaaggcgc cgataggtaa taaaatattc gaaaaaacaa
     4861 aatccatatt atcaaaaatt gaaccggcac caaattggat gtggctgagt ggcccaaatg
     4921 ataatgtagc aggtacacca acgatgaata cggctaaact gatgatcaat gccatcgttg
     4981 gacgtttgcg gttattatta cgtgtgaagt tcgacacgtt cagttctagt agtgaaatag
     5041 aagatgtgag cgctgcaaat aaaaagagca ctaagaaaat cgcataaaat aatgtgccga
     5101 actgtatttt ttcaaaaacg agtggcaata tgataaacaa taagccaggt ccttctttcg
     5161 cttggtagcc gaacgtttct aatgccggga aaatcgctaa gcccgctaag atcgcaatgg
     5221 caatattcat gattaaaatc gtcaatgctg acgttttaat cggcatatct gttgaagcgt
     5281 aactcgcata tgtcatcatc cctgtcgtcc cgagtgatag cgcaaaaaag gactgtccta
     5341 aagcgaatag catagactcc atattgattt cagagacacg cggttggaat aagaaacgta
     5401 ccccatccat agccccatca agcgataatg ttttcactac gatgatgatt aaaaagacta
     5461 ataataaggg catcattaat ttcgacgctt tttccaaccc ttgttgcacg ccacgcatga
     5521 caataccaca tgttaatgca ataaaaatcg cctgccccgt aacaacatag agcggttgac
     5581 taataatagc ttgaaattgc aaatcgtgaa gatgtgtcgg cacaatgtgg aacagttgcg
     5641 caaggacaaa gccgagatag acaataatcc aaccgccgat cacactgtaa aaactaaata
     5701 acacaaacac cgctaaatta ccaatccatg cgatgccatt taaccatttg cgccctgtta
     5761 actgaccaaa taattctgtt gtatacgtgc gaccaagttg accgactgca aactccataa
     5821 tcagtaacgg tagacctact aaaatcgtaa aggctaaaaa cataaataaa aatgcgccac
     5881 caccgaacat ccccgccata taaggaaatt tccatagtgc acctagacca atcgcagaac
     5941 cggcactcgc taaaataaag ccggttgacg atttccattg tgaccgttgc gacaaaaccg
     6001 ttcatcctct ctttttctac gctttaatac gttgaatcgt ttaagtcatc ttgcaatata
     6061 acacattcat aagttatcga caatgaaaga acactttttt atagtatttc atcaaaagtt
     6121 tagtattgaa acgatgttgt attttgttat gattaagttg taaaagaggt gagaagtcat
     6181 gtcgcaaaaa ttaaaagaac gtatttattt aattgccatc attgtgagta cgctatgtgt
     6241 cttgtcgtct gtgctgtttg gtttaagtcc aacaatcaca gcaaccgtta cgtttatctc
     6301 cattatcgtc tttgcgattc tttattttgt cgtgcctaat aaacaacaga atcgcaaatt
     6361 aaggtagcaa aatgggggat gagacaagcc caacacatcg atatttacgt accataatag
     6421 gttcattttc agtatcttta tttttttaaa cagacaggta gaggctgggg cattatgttt
     6481 tccccaacct ctttcctact cgcttattta tgatttaatg attataaaac agtcaaaaac
     6541 attgtttttc aacataactt tattgccaat attgcatttg ataaccgatg cgaggccgcg
     6601 taataatgag ttgtttcgac tcgggatggg cttgtgtcag tttattgcgc aacgacgtca
     6661 tatgtacgcg caagctcggc atttctgatt gattcacata accataaatt gctttaagaa
     6721 tcgtatcata cgtaagcact ttacctacgt gacggcacaa taattctaat aaagcaaatt
     6781 cgtgcggcgt caaattgagc aattgattat caatttgggc cgttttagct tgatacgata
     6841 cgactaaagg gccattttca aagacaattt ctttttgatt ctgcatattc tccaaccgtt
     6901 gcaccactct aatacgtgcg cgtaattcat ccacattgaa tggtttggtc atgtaatcat
     6961 ttgcaccgtt atccaatgcc tcaacaattg tttgttcatc caatcgtgca ctgatcacaa
     7021 taataggaat atcgaaagtt tgccgtatcc ttttaatcaa ttctaaaccg tcgatatcgg
     7081 gtaaccctaa atctaataaa atgatgtctg gtgctttaga acgtatttga aaatcagcat
     7141 cctttccatt tgtcgcagtg atgactttat aataatcaag ggttaatgag acatcgagca
     7201 aatgggtaat tgccgcatca tcttctacca ctaatatttt tgtattcacg gcacttcact
     7261 cctcaatttg tatttttttc aaaaggtaag ttgaaataaa atatactccc atgcggctca
     7321 ttttgtcgat attttaactg actgtcatgc ttttgtagaa tcgcctgcac gagataaagt
     7381 ccgagtccca tactatcctt cttattatct ttgaaaagtt gatgtttctc aaaaggctgg
     7441 aaaattgttt gttgttcttc atccgacaat cccggccccc tatcgattac ctcaaataat
     7501 atgtggggtt catttttatt gattcttaac gtaataggtg tttcaggtgg cgtatgtttt
     7561 aacgcgtttt caatcaaatt aaaaaccgct tgtaaaatga gctgactatc aatatcgacg
     7621 aagcatatct catgtaatgc cgacactttc acttgcttgt tgagccgtct acgttcaagc
     7681 acggattcga tttcttcaac taattcttca atgagataca gttggcggtt gagcttcata
     7741 ttcgaatgct cgagtctggt aagtgacaaa atattggaaa cgagcatgtg taaatactgg
     7801 gcttcgtcaa acgaccgcga aactaactgc tgttgttctg cgcgaggcat ttctttccca
     7861 ttgagtaata agacgtccaa gttaccgatg atagaggtta gtggtgtgcg aatatcatga
     7921 gaaatggagc gtaaaaagtg ggcacgtgcc acctcccgct cagctcgtaa catcgactct
     7981 cgtgtttgac gaagtaagct caagttctct acagcaagcg acatttcatt caacatggac
     8041 tctaaaatag aattgtcata ggaatcaata atgtacgctt cagaaaaatg tatagaaacg
     8101 attgctttaa caggttttgt gccaatcggt atgagcaaat agtgaatacc aggaaatgta
     8161 tccgttgttg ctcctgcacg cttttggttt ttaatgatcc aacttagcgc ttgttggtgg
     8221 cgagaatcat tagtctgtgg cccttcaacc ggtatcgttt ttgaaatttt ttcatcttcc
     8281 actaaataaa tcgtaacttc ttgctttaac agatgttgaa tttgatgtct tgcattcact
     8341 aataaatcag gaatcgtgta cgtttgttta attgaatcat taaactgcaa caaaatatcg
     8401 gtccggtaca attggtgttt cgtgacgatg tactgatgct taatttgttt taataagcca
     8461 ctcgtgacga tactcacgat aatactgatc gtgaaagtga taggatagtc aaagcgataa
     8521 acctcaaacg taaatcttgg cacagtaaaa aagaaattaa acaccaacac gtttaaaatc
     8581 gcagcgaaaa aaccgattaa atacgattgc gtccacatac ttaaaacgac aatacctaat
     8641 aaaaataaca gtagaatgat tgtatcttgt tctcctttgc ctgtgctata aatccacaag
     8701 cctaacagta cgcaaatcgc ttgaatcgca atcattttaa aaatatcgac agtccaacgc
     8761 ttttgttgca tatgttgctg ttgtcgctca ggctttgctt tcatttgaat atgtttaatc
     8821 ggcacaattt caattttata atgatgtttt aaatcaagta attggtcaat taaaggccgc
     8881 ttcaaccgtg tatgccattt atcattcata tgttgaccga taacgagttt cgtcactttt
     8941 tgggatttac accaatcatc gagacccgat gcaatttgat tatcatatat cactttgacg
     9001 gatgccccta acgactgcgc cagcattaaa ttttggtgca cttgactatt atttgcatac
     9061 tgtttgcctt catgatcaaa cacgtcaata tacaccgctg taaattgagc atgctcacgg
     9121 ttcgcaatgc gacgtgcctc tcgaatgacg gtttcattgc tgatacttcc actgatagca
     9181 actgcgacat gcggggtaat atctgtattt ttcttataaa gatgctcttt ttgactcatc
     9241 atatcagcgg ctgttctcaa tgttaattct cgtaattcag taaggttctc atatgtaaaa
     9301 aaatgcgaaa atgctgtgtc gagtcgttcc tttttataca cttttcctgc tttaagtcgg
     9361 ttgatgagtt gctttggtga aatatcaatg acctctattg catcactcga cataatgaat
     9421 tggtcaggca cacgctcttt aattttgacc cccgtcagta acgccacttg ttcactcaaa
     9481 ctttcgatgt gctgaatatt taatgttgta tgaacatcaa tgccgtggga aagtatttct
     9541 tcaatatcca tgtacctttt ttcatgtcgc tcttttgaaa tgttggtatg cgctaattca
     9601 tcgatgagga ccacatctgg gtcgtcttca ataatttgat caacatctaa atagtggaat
     9661 gtatggctgc cgtgattttt agattttgtt tgaataactg gcaattgttc agcaagggct
     9721 tgagtttctt tacgttgatg tggctcgata taaccaattt taatatccgc accttcgtga
     9781 taagcatcga tcgcattgga taacatttca taagttttac ctacacccgg agaataaccc
     9841 aaatatatcg ttaatgctcc tctttttatc gttagatgac gctccatatt cttcacctct
     9901 tctcactcat cataaacttc aaatcttaca ttttctataa aaaaatacgc ttttatttat
     9961 cttaataact tcttaataaa acaacgcaaa tattaataat ccccttatag aaatttttat
    10021 ataatgattt cggcaataag gaggaggtcc acagatgatt agcatattag gtttgatcgt
    10081 catcgtatta atcggctatt tagtctatgc cttaatttac agtgaaaagt tttaaattca
    10141 gctattgatg gagggaaaac atggaaatcg ttatcttttt aatcaccttt tttctatgcg
    10201 catttttatt aagtcgttat ttatacagcg tggcgttatt aacacctaca cccgcagaca
    10261 aagtattttc aggtgttgaa aaaggcattt ataaagtctt agggacgcaa ctagagcata
    10321 tgtcgggtaa gacttacctc aaacattttc tattgtttaa tggactaatg ggcgctttga
    10381 cgttcgtact gctactcatt caacaatggc tctttttaaa tcctaaccat aatttaaatc
    10441 aatctgtgtc attagcattt aacacagccg tgtcgttctt aacgaatacg aatttgcaac
    10501 attacgctgg tgaatccggt ctaacctatt taacacaaat gatggtcatc acttatttga
    10561 tgtttacgtc tagcgcttca ggttacgcgg tttgtattgc aatgttacgc cgtttaacag
    10621 gaatgacaga tatcatcggc aacttttatc aagatatggt gcgcttttta gtccgtgttt
    10681 ccataccttt gtcattcatt gtaagtctct tgttaatcag tcaagggaca ccgcaaactt
    10741 taaaagggaa cttaacattg catacgatta caggaaaagt tcaacatatc gcatatggtc
    10801 ctatggcatc tttagagtcc attaagcata tcggtacaaa tggtggtggt tttttaggtg
    10861 cgaactctgc cacacctttt gaaaatccga ctgtatggtc taactatatc gaaatgttga
    10921 gtatgatgtt aattccgggt gcactcgtct ttctattcgg acgaatgttg accaaaaacg
    10981 gcaaacacat tcatgcgcat gcttatgtca tcttcggaac catgctgctc tttttcttag
    11041 tgtgctttgt catcgcattg attgcagagt acaaaggcaa tgtcgtgttg gctcatttag
    11101 gtgttattgg cccgaacatg gaagggaaag aagtccgatt tggtccaggt ctgtcagcat
    11161 tatttacagc gatcacgaca gcatttacga ccggtacagt caataatatg catgacacac
    11221 tcaccccaat tggtggtctc gtacctatcg tgctcatgat gctgaatgcc attttcggtg
    11281 gtgaaggtgt cgggttaatg aatatgctca tttacgtttt attgactgtc tttatttgta
    11341 gtttgatggt cggcaaaaca ccgcattatt tagggatgaa aatagaaggt cgcgaaatga
    11401 agctgattgc gttgaccttt ctaattcatc cggtattaat tttaatcgca acagccttgg
    11461 cttttatcgt tcctggtgcg agtgcggcaa tcaccaaccc ttcatttcac ggtatttcac
    11521 aagtacttta cgaaatgagc tcatctgcag cgaataatgg ttctggcttt gaaggtttaa
    11581 gcgataatac agcattttgg aacatctcga caggtatcgt catgttgctt gcacgctata
    11641 cccctatcat tttacaagtg atgattgctt caagtttggt gaataaaaaa gcctatcaaa
    11701 aaagtgatca aacgattgcg atcgacaaac ctttcttcgg ggtatcactc acgattttta
    11761 taattttgtt gagtggtttg acatttttac ctgtgttatt acttggaccg attggcgaat
    11821 ttttatcatt aaaataaagg agactgtgtt gaatgaaaca atcatctcat gtgttgaatc
    11881 gcgcgattgt cagacaagcc atcaaagaaa gttttattaa attaaaccct gtatctctca
    11941 ttaaaaatcc aattatgttt gtcgtagagg tggggatggt tttaacgtta attatgacaa
    12001 tcgtgccaca aatttttaca gatggcgcga tgtcacgact ttatttattt acgattttca
    12061 tcattttatt ctttaccgtg ctcttttcta acttttcaga agcgattgca gaaggtcgcg
    12121 gtaaagcaca ggcgaacagt cttcgagaaa caaagtctca tatgattgca cgtcgcatag
    12181 tcaacgctga agtatacgaa acggttgatg cgtcagcttt aaaacgaggt gaccgtattc
    12241 tcgtaaaatc aggtgaaatg attccgtcag acggcacaat tattaaaggg attgccacag
    12301 ttgatgaatc tgctattacc ggagagtctg cccctgttat aaaagaatca ggtggcgatt
    12361 tttcgggtgt cattggtgga acaactgtga cgtcggactg gctcattatt gaagtagaca
    12421 gtgaagaagg tgcgacattt ttagataaaa tgattgccct agttgaaggg gcccaacgta
    12481 aaaaaacacc aaacgaaatt gcgctgttta cattgctaat gacattaacg attatttttc
    12541 tcgttgtcat tttaacgttg tatcccattg cccaatattt aaatctgaat gtccctatca
    12601 catcattgat tgcattgaca gtttgtttaa ttccaacaac gatcggggga ttactttctg
    12661 ccattgggat tgccggtatg gaccgtgtta cacaatttaa tattttggcg aaaagtggac
    12721 gcgcgattga aacgtgtggc gatgtcgatg tcttaatttt agataaaaca ggcacaatca
    12781 cgtacggtaa tcgtttagcg gaatccttac tgcctgttcg ggaggaatgg tatgacagat
    12841 tactcgtcgc agcgtatgaa agttccgttg aagatgatac acctgaaggc aaaagtatcg
    12901 tcactttagc caaacgttca tctgtacagt tgccagagga ggtcaaagga gattatcgac
    12961 cattcaaagc agaaacacgt atgagtggta tcattatcgg cgaacgttca gtctttaaag
    13021 gggcacctaa tagtatgttg aaatatgtga aacaacaagg tggggtgatt ccttccaata
    13081 tcgaagcact cgttactgaa gtctctagta aaggcggcac accgttaatt gtcgttgaaa
    13141 accaaacgat cttaggcgtg atctatttaa aagatgtcat taaagaaggc ttggtggaac
    13201 gtttccaaga gttgcgtcaa atgggcatcg aaacggtgat gtgtaccggt gacaacgaat
    13261 tgactgccgc tacaattgca aaagaagcca gtgtcgaccg ttttatcgcc gaatgtaaac
    13321 cggaagataa aatcaaagtc attaaagaag aacaagaaaa aggccacatt gttgcgatga
    13381 caggtgatgg aacgaatgac gcccctgctc ttgcccaagc gaatgtcggc ctagcgatga
    13441 attcagggac attaagcgca aaagaagccg caaacttaat tgatttagat tccaatccaa
    13501 cgaaattaat ggaagtcgtc aaaatcggta aacagttgct catgacgagg ggcgcattaa
    13561 caacatttag tattgcgaat gatattgcca aatattttgc cattttacct gctatgatga
    13621 tggtcacgat acctgaaatg aatcgcttaa atattatgca gttacattcc cctgaatctg
    13681 ccattatttc agcactcatc tttaatgcac tcattattgc attgctgatt cctattgcga
    13741 tgaaaggggt gcgcattaaa ggggcgtcga ctgaaacgat attgatgaaa aatatgttgg
    13801 tctatggact cggcgggatg attgtccctt ttattggcat taaattaatc gatcttttaa
    13861 ttcaatggtg gctataggag gatgcatatg aaaacgataa gaagtagtat aggactcgtt
    13921 gtaatgacaa tgattttatg cggtctcatc tttccactgg ctgttactgc agttgggcag
    13981 acattgtttc atcatcaagc gaacggtagc cttgtgacac agaaccatca aattgtcggc
    14041 tccgagttga tcggtcaaca atgggatgaa cctcaatact ttcatggccg tgtaagcgct
    14101 gtaaaatata atatggatgc cgccatgatc aaaggaaacg gggtcgcttc tggtagtcat
    14161 aactattcta atgggcatcc tgaacttcaa cagagagtgg cagctttaaa acaaataaac
    14221 ggccatacac ctatcgatgc cgttacagag tcaggttcag gtttagaccc ggatattact
    14281 gtaaacaacg cgaaacaaca agtcgcgcgc atcgcagaac gcagaaacct gtcaacagaa
    14341 caaatcaatc aactcatttc gaaccaagcc catcaaggta ctttgtatga tgatgatgtc
    14401 aatgtgttag cattaaatct tgccttagat cgcatgtcag gtcattagtt tttaggtggt
    14461 tgcgtagata caaacgaaac atctcgttca cataccgtcg gagaaacaat gagataagtt
    14521 gtggaggaat ctgtgacact agattgcttc acaacttttt atatttagct atagaacgct
    14581 tcaaaaactt cctctaaatc gtgttgtgcc tgttgtaata ccgcttcttt acttaattta
    14641 gctgtacctt gagcgcgaac aatgtaatag tcatcaaatg ctatcatttc tttaaacatc
    14701 gcttttaaat attgaggcgc aaaatctaaa ggttgatagc gatcttcgtt agtataaatg
    14761 gaaccgatcg cctggatata tagcgcttta taattatcag tcattaaccc tactgaaccg
    14821 tcagacgtat atttgaaagt ttgacgcact atcaaaatgt tatcaatata atcttttaaa
    14881 cgtgatgtaa cattaaaatt gtgcagtggc gaaatgatga caatgcggtg atgtgatttg
    14941 aattgtgaaa gcaaggctgc attaatctga gcgaggcgtt gttcttctgc tgtcattgtt
    15001 tcacctgaag attgcttatc ccaaacatta agcaactgcg ccatttcaat acgggggtaa
    15061 ttcaatatca tattaaattt agaatatccg gtgtatcatt tgggaattca tcgttgtatt
    15121 tttttagaaa catggcttgc atttgattgg caaagctgtc cttgttgttg cacctcggat
    15181 gtgcgttaat gattaacgtt ttcataattg atgctcctct ttttttgggt gagacgagta
    15241 tagtaatgat agttttcaaa atatatcttt taaattaata cataaaaccc ctctttcaaa
    15301 acgatttatc tcttcattat actcacttga tcttggcgaa aagcaaaaag actgagatat
    15361 gatcccagcc tttatgatta caatgcattg ctgttcatga gacaccaata attcaatgtg
    15421 cttgattgac ttcatatcga aagcttgtcc ttattcacat catcaaaccg ctatttttgt
    15481 aaaatctttt caatataaaa tgcagattct tcaattgaac gatattctgt attaatgact
    15541 gtcgcattga gctgtttaaa aacctcttcc gcataggcga gttctgcttt aatgcgctgt
    15601 aaatcattgt aatacgcttg tttccctttc ataccgagca ctttcacacg ctctgttcga
    15661 atgctcataa tatattcagg gcttgcggtg agaccgatga ctttcaattt tttgtctttt
    15721 acgatgtcat aagggatgcc gatttcaggc actaacggaa tattagcgac cctgtaccct
    15781 ttgttcgcta aatacatact taaaggtgtt ttagatgttc tagaaacacc gacaataagg
    15841 acgtccgctt cttcaatatc tgtaaaatgt ttgccatcat catatttgac tgcatattct
    15901 attgcgtcaa tccgtttgaa atagtcttca tctaactcac gtatttttcc tttttccttc
    15961 acaggcacat gacccgttgc ggcttgaaca tgctgcatga atggtgacat gtaatcaatg
    16021 tatggaattt catgttccaa agcgtacgct tgccccaatg cattgaaatg atccgtcact
    16081 aacgttgtca cgacgatggc ttgccgttct ttggcgagtt ttagtacgtt aaggagcgct
    16141 tcctcacttt caatcaatga aaatttcttc atttctatct gtgtcagctt cggaaattga
    16201 ctcatcaccg catgcaccat acgttgtgcg gtctcaccta atgaatctga tatgataaaa
    16261 atggtcaatt gcggtgttgt tgtcatatta tccctcactt tcaacgacac tttgtgctgc
    16321 cgctaacttg gcacctggta cacggaatgg cgaacatgac acataatcaa tcgccatacg
    16381 gttaaagtgg tggatggatt tcgggtcccc gccgagctca ccacagacac cgattttaat
    16441 attaggattt gcggcttttg cttgttctga cgcattacga acgagttcac ccacgccatc
    16501 cacatctaaa gtttggaatg gatcagctgc taaaatatgt tggttcaaat agtcattaat
    16561 aaattttccg gcatcatcac gagaaaagcc gaaagtcagt tgtgttaaat cgttcgtacc
    16621 aaagctgaag aagtcgcact ctttcgcaag gtcacccgca atcacacaag cgcgcggtgt
    16681 ttcaatcatc gtccctacta aataatggag tgattggttc gtgtctgtct caatttgctg
    16741 aatcgcatcc agaatttgtg cttttaatac tttaaactct gccacagtag aaacgagcgg
    16801 caccataatt tctggatgac atgtgatacc ctcttctttc aattgtgcca cactcttcat
    16861 catcgcttcg acttgcataa catacaattc tggatatgtg atcgcgagac gacaaccacg
    16921 gtggcctaac atagggttcg tttcatgcaa ttctgctatg cgttgtttca actgtgccgc
    16981 tgaaatgttt aactgctttg cgacactgtc aacttcttcg tcagatttcg gtaaaaattc
    17041 atgaagcggt ggatcgagta aacgcacaat cgttggacgt tcgcctgata aacggaaaat
    17101 ttgttcaaaa tcttctgttt gatatgtgcg aatacggttt aaagcttgtg ttcgcgtctc
    17161 atcgtctgaa gataaaatga atcgacgcat ttctactaat cgttctgcac cgaaaaacat
    17221 atgttctgta cggacaaggc caataccttg cgcattgaac tgataacccg cttcaatatc
    17281 aggcgtcgtt tccgcattca tacgaacacc tagacgcgca atctcttccg tccattgcat
    17341 aaattgttcg aacgcctcgc tatgttctgc acttgtcgtt tccacgatac ctgcataaat
    17401 gtcaccttgt gcgccgtcga cagaaatttc atccccttca aataactgac cattcgcata
    17461 agtcactgtt ttctcacgtg tattaatttc aaggtccgca cagcctgtca cacaacattt
    17521 ccccatgcca cgcgcgacta cagccgcatg cgacgtcatt ccaccgtgtg tcgttacgat
    17581 ggcttcactc gcaatcatcc cttcaatatc ttccggtgac gtttctggac gcattaaaat
    17641 gactttttcg cccgcctcag cttgacgttt cgcttcttct gctgaaaaca caattttacc
    17701 cgtcgccgca cctggactcg ctggtaaacc tgccttcgaa atgattgtcg ccgcttctaa
    17761 cgcttgtgct tcaaatgttg gatgtaataa cgtatcaatg gatttcacgt ccactttagt
    17821 catcgcatct tttttcgaaa tgacgccctc ttcgactaaa tcaaccgcaa tttgcatcgc
    17881 cgctttcgct gtacgtttac cattacgcgt ttgcagaata taaagctttt cattttcaat
    17941 cgtaaattca atatcttgca tatcttgata atgttgttcg agttggtccg ccacagccac
    18001 aaattgttca tggacgtgtg gcatttggtc gtgtaatgtc gcaatatctt ggggcgtacg
    18061 aatccctgcg accacatctt ccccttgtgc gttcaacaaa tattcaccaa atagtttcgc
    18121 ttcacctgtg acaggattgc gtgtaaaagc aacccccgtt ccactttgcg gtccactatt
    18181 accgaacacc atttcttgta cattcacagc tgttccaata tgatgtggaa tgtcattcag
    18241 gtcacgatac acacgtgcac ggtcattatc ccaagatttg aagactgcct caattgcttc
    18301 taacaactga tcaagtgggt tttgtgggaa tggtttatac acttcttcaa tataaaccgt
    18361 tttaaagtgt tcacagattt cttgtaaccc ttcagccgga atatccgcat cattttgata
    18421 accgtgcgtt gctttgtaat tatcgaagta tgtatcaaat gcagtcatcg gaatcccgta
    18481 cacgacttcc ccaaacattt gtaagagacg acgataacaa tcataagcaa aacgtgcatc
    18541 attcgtttta cgtgcgagtt tttcaacatt ttcatcattc aagcctaaat ttaaaatcgt
    18601 atccatcatg cccggcatcg aaattttagc cccactacga actgaaacaa gtaacaggtt
    18661 ttcatctgaa gaaaatgcct tattcgtacg ccctgaaaac gcctccaatt gtttttgtaa
    18721 ctgtgttttc acttcatctg acaactggtc accacgctct aaatattcaa tacatgcggc
    18781 tgtcgttatc gtgaagccat caggaactgg taaacctaaa cgcttcattt ctgataaatt
    18841 ggcccctttg ccaccgagta aatctttcat atttttctga ccttcatcaa atgcataaac
    18901 atattttgtc atactgagca cctctatctt tttaatatgc catactaatc aaataaaagt
    18961 atgtcatatt aatccgaaat tgacaatcaa aaatagctgt attcattaat ttttttattt
    19021 actgtcaata atttgtcata aagaaggccc tgtccaatta tcaatgggta tcacatctta
    19081 cgtccatatt gatgacaccg ttgaagcagc aatcaaagcg ctcgatttcg aaccaggtat
    19141 ttataacgtg acagatgacg agccgattga tggcgaaaca tgggctactt ggtataccga
    19201 acaactgaac gtttcttctc atattaaatt tttcaaagcg caatcattcg aacgtggcgc
    19261 ggagaatcga aaatacaaag cacaaggtgg cacattgtta tattcaactt gacgtgatgg
    19321 tatgaatgta aacgaataaa taactgtaac ggaaagcata cttcaaatgg tgcttttcgt
    19381 tttttatttg aatttaatga agtctctgtt taattttgtt caatatgaca tgcttaagag
    19441 aaaatgaatg atggaagcat gatttcaaaa tgctttttga tgttcacacg cgcactactt
    19501 taaattcgga aatatagtgc cggcaaagat aaggtgataa cagtcattta aaaaccagat
    19561 aacgctagcg attgatatag atttaagaag gagcaacttc aaaaagcgag ccatatttat
    19621 ccgtacacta gcaaccatgt cctatatatt acgaaagcta attgccaaaa atttagttgc
    19681 aaaccaaagt gaatccactg ag
//
LOCUS       DANHOL010000035        19576 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.035, whole genome shotgun sequence.
ACCESSION   DANHOL010000035 DANHOL010000000
VERSION     DANHOL010000035.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 19576)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19576)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19576
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.035"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            169..435
                     /locus_tag="PTC08_000884"
     CDS             169..435
                     /locus_tag="PTC08_000884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682403.1"
                     /translation="MTQNINNYYFSLVYTTLLVFFSLPLTHIYTQNVLLYGLMTFVIL
                     LSTVVVEMTLNRTHDLKTKAKRMLWTIVPINVIVFSIFIFFIFK"
     gene            543..1322
                     /locus_tag="PTC08_000885"
     CDS             543..1322
                     /locus_tag="PTC08_000885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDK5682404.1"
                     /translation="MLFSIQQGTKRKSGRTLLSDINWQVNEGECWLVYGLNGAGKTTL
                     LNMINAYDFLTAGEIQLFGMVPGQRGYSAHHVREHIGYVSGLLRDRFSAGEIVRDVVL
                     SGIFKSIGLYEQPTETQVALAREMLALLNMQAFETQYFGLLSTGEQQRVLFARALMNE
                     PSLLILDEPANGLDFVGREQLMATLSQIRKHFPQTAVIYVSHFIEEVTEDFTHALLLK
                     QGTIQNQGRIEAVLTNHTLSQLFDIPVALYQHHGRYQIVKV"
     gene            1397..2251
                     /locus_tag="PTC08_000886"
     CDS             1397..2251
                     /locus_tag="PTC08_000886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HDK5682405.1"
                     /translation="MQNVKAIFLDMDGTILRSNNRASEETAQILNQLREEGYKVFLAT
                     GRAYEEIHLLIPDDLSFDGIISSNGTLGHIGESVLFEHDLNVEAVNSIVTAAQQDGIY
                     YEVFPFHDPRFALEQDKAWMLKMIDGDKPEAVHQSEWLSRHEAIEGKLTWRVDIPADV
                     GYSKIYLFHPDLAHIQQFREKMMAQTEEWNIEVSNSTPNNVETMAYHINKGTGIEEMC
                     AHYNIAISDTLVIGDSDNDRTMFEKGAVTVAMTNAAPHIKAMTDYETDVDNNADGAAQ
                     FLKKHLLK"
     gene            complement(2804..3709)
                     /locus_tag="PTC08_000887"
     CDS             complement(2804..3709)
                     /locus_tag="PTC08_000887"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase"
                     /protein_id="HDK5682406.1"
                     /translation="MFTFTKLFWHNTQNQKARLFGIAFIGFAILLLLTILAMSPYNLL
                     LQVWQMSMLTGQQNLTSLILMMVGAILLTIFLFAMLIFPFFVGVISAIHHSILNTTKA
                     RWKDLFRAFKKGVWGKTVILGILTLLFIVVTAIIYALVNAGMTFLIQQIFNWVSGTGL
                     GQGVLQFIVSILIVLISFVLSIVVWFAALYIINIVVSVNEDASRTIKSHFKEAGSGFK
                     NGNRTFLRFFIGILLLNLIFIILNEPINFLIQQSLAHMSQNLAYYLMMVLNVVFLLLR
                     YVVYLLIIGTAVQYFVRRGRKETHV"
     gene            3895..4599
                     /locus_tag="PTC08_000888"
     CDS             3895..4599
                     /locus_tag="PTC08_000888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FadR family transcriptional regulator"
                     /protein_id="HDK5682407.1"
                     /translation="MKISNQKIYEQIADILIQQIEEGVLKEGDRLPSIQKLAAEYGVS
                     NASIREALNALRIIGLIDIKHGYGTFVKQKQPLLFDFTSQALTQKRVREILELREVVE
                     VATAKLAASRRTEEEILVMEEALDEMNGAIERHQSGEEADLKFHLAIAKASDNHLLYE
                     LLNNIADLIQQTMKGTRHIYIYSRQKTMEKLMEEHSVILEAIKNKDSVASANLMTAHL
                     AEIRQTLVENYIVNEH"
     gene            5006..5944
                     /gene="manA"
                     /locus_tag="PTC08_000889"
     CDS             5006..5944
                     /gene="manA"
                     /locus_tag="PTC08_000889"
                     /EC_number="5.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannose-6-phosphate isomerase, class I"
                     /protein_id="HDK5682408.1"
                     /translation="MPLILEPVFQERIWGGTNLAQFGYDLPSDHTGEVWGISAHPHGA
                     NRILNGPFKGQTLDEVWENQPKLFGEFPTKKFPLLTKILDATEKLSVQVHPDDTYAYE
                     HENGEYGKTECWYILDAKQGAEIIYGTHADSHEALNEMLERREFERLFKRVPVHKGDF
                     FFVPAGTVHGIGDGIMILETQQSSDTTYRIYDYDRVDKEGKKRELHLEKCKDVIQIGD
                     ESPNVIPQTEVIENHKCTIFVQNHFFTVAKWEISGTLNYMKPREFVLVSVLEGQGQLI
                     SDGEIYDIQKGNHLILTAEDLDNVFEGDFTLMVSYV"
     gene            5961..6197
                     /locus_tag="PTC08_000890"
     CDS             5961..6197
                     /locus_tag="PTC08_000890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682409.1"
                     /translation="MKIGLYIALICGVVAGATIFFQAPLFPSLIFPIIIGMVGIIATL
                     WTLPQSDISPMLKLGGIMINLFPVVAGIFQLMNG"
     gene            6275..7639
                     /locus_tag="PTC08_000891"
     CDS             6275..7639
                     /locus_tag="PTC08_000891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EVE domain-containing protein"
                     /protein_id="HDK5682410.1"
                     /translation="MTAETNYFWLNCGYNRWNHNEPLVGQKTVFESGAQFNPTQGFRA
                     FKQAKVGDRVIFYQVQTDAGLLGWGEITNVRTGAQNKIHVEFKFVETFKALTTDYLKR
                     SEPLEFRMNNMKETLFNKISYDEFELIKGLGSGDISIPRYFFMAETENFESDETYTIY
                     THTINGIKRNGYHHYTQLEVGDQVVIYNRYSNQSVIGRAEVAHHIHTRPPEAGRTNST
                     AIEIRYIEDIPPVSLMTLNKHPKLKNLYFLQENAKQAIASLTPTQFDAIMEMSENDGL
                     KGQFEAVTHTEEGQQVDDIKPFILLLAHDKAEGLASAKTLVEKANATPVITVGHPDFS
                     EEMLYGRYLPNEAGALYYREGFITELMPKTDRQFLVIDQFERIDADIFQTYINVIEGH
                     EVTLPRYNKNGSMVKWSREKDSFYRFNPNWHIVGVTYLTAQEVKEKYPSQFLKYARIV
                     QVKH"
     gene            8370..9800
                     /gene="nhaC"
                     /locus_tag="PTC08_000892"
     CDS             8370..9800
                     /gene="nhaC"
                     /locus_tag="PTC08_000892"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaC"
                     /protein_id="HDK5682411.1"
                     /translation="MEKKVKFKKDINVWYALLTLTIMISAMLYTVVKLQQPPHLPLLI
                     GTSVAIIITMAHGYRWEEVEEMMYKGIRHALPAVVIIMLVGLIIGAWIGSGVVAAMIY
                     YGLKLISPTYFLAVVVVICGIVSLAIGSSWSTMATVGVASMGIGMSMGLSPGMVAGAV
                     ISGSYFGDKMSPLSDTTNLASGLTNVDLFEHIRHMFYTTIPGLVISLIIFFVMGQMYG
                     SDHLEQQKIDTIMNGIQDAFVISPWLLLIPLIVIIAVAFRVPAIPAIVLGIVLGFFTQ
                     IFVQGDTLVNAVKVLQTGFTIDSGNKTIDELFNRGGLESMFYTISLTLVAMTFGGLLE
                     YSGMLKALISVVLKFAKNTGSLIASVIISCVGTNLSCSEQYISIIVPSRMYVATFIDK
                     GLHPKNLSRALEDGGTLTSVFVPWNTCGVFIFTTLGVSVSQYGPFAILNFIVPIISII
                     YGFTGFKIDKLSPAEKTYYQQQEATN"
     gene            9865..10269
                     /locus_tag="PTC08_000893"
     CDS             9865..10269
                     /locus_tag="PTC08_000893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF393 domain-containing protein"
                     /protein_id="HDK5682412.1"
                     /translation="MPIVYYDDRCIYCYNYAIWLIRHGLSRSYQFVPLKSPAGEALKK
                     AHPEVLEYNSVVLQEGDHLTFQSTAIAKLIFTLDGYKWLAALLWLVPKPLRNLGYQLF
                     ADNRDKMWKTTWAKANAYEQSFFKQTQVPTKE"
     gene            complement(10499..11209)
                     /gene="deoD"
                     /locus_tag="PTC08_000894"
     CDS             complement(10499..11209)
                     /gene="deoD"
                     /locus_tag="PTC08_000894"
                     /EC_number="2.4.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-nucleoside phosphorylase"
                     /protein_id="HDK5682413.1"
                     /translation="MTQGTPHIQPNGKKIAKTVLMPGDPLRAKFIAENFLENVEQFND
                     VRNMFGYTGTYKGKEISVMGSGMGIPSIGIYSYELYNFFDVDTIIRIGSCGAMQEDIQ
                     LYDIIIGQGASTNSDYVDQFQIPGHFSPLADFDLVVKAKEKADAIGARAHVGNILSSD
                     TFYNANPDFNQKWIEMGILGVEMESAGLYLNATKAGKKALGIFTVSDHLLRDEATTAE
                     ERQNSFTQMMEVALEIAE"
     gene            11425..12726
                     /locus_tag="PTC08_000895"
     CDS             11425..12726
                     /locus_tag="PTC08_000895"
                     /EC_number="2.4.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine-nucleoside phosphorylase"
                     /protein_id="HDK5682414.1"
                     /translation="MRMVDIIAKKRDGHALTKEEIEFVVNGYTNDDIPDYQMSSLAMA
                     IFFQDMTDEERAYLTMAMVESGDQIDLSNIEGIKVDKHSTGGVGDTTTLVLAPLVAAL
                     DVPVAKMSGRGLGHTGGTIDKLESVEGFHVEISEEAFVKLVNEDKVAVIGQTGNLTPA
                     DKKIYALRDVTATVNSIPLIASSIMSKKIAAGADAIVLDVKTGNGAFMKTVEDAEQLA
                     HAMVKIGNQVGRQTMAIISDMSQPLGRAIGNALELQEAIDTLKGEGPEDLTELVLTLG
                     SQMVVLAQKAKDLDEARGMLQEVIDNGKALEKFKTFLSNQGGDASVVDEPSKLPTAQY
                     QFELPAKRSGVVSEMIANEIGIASMMLGAGRQTKEDVIDLAVGLVLNKKVGDRVEEGE
                     SLLTIYANSEDVEQVKQKLYDNITISDHAEQPQLIHTIITE"
     gene            12738..13091
                     /locus_tag="PTC08_000896"
     CDS             12738..13091
                     /locus_tag="PTC08_000896"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682415.1"
                     /translation="MKQLGRIVLGLAFMAIGVLHFTKERQFRNIVPTYLPLRKTAVLV
                     TGVCEIVIGALLVLRRPSDALKNWINAFLLAVFPANIYMARKKLPLGDKPLSDTARYG
                     RLPMQFVLMYIIKKL"
     gene            complement(13153..13623)
                     /locus_tag="PTC08_000897"
     CDS             complement(13153..13623)
                     /locus_tag="PTC08_000897"
                     /EC_number="4.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-ribosylhomocysteine lyase"
                     /protein_id="HDK5682416.1"
                     /translation="MPKMNVESFNLDHTKVVAPYIRLAGKMQGLNGDDIYKYDIRFKQ
                     PNKEHMEMPGLHSLEHLMAENIRNHSDKVVDLSPMGCQTGFYVSFINHTDYDDVLNIV
                     EQTLQDVLAADEVPACNEVQCGWAASHSLEGAKEIAQAFLDKRDQWHDVFGTGK"
     regulatory      13919..14024
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00162"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="SAM riboswitch class I; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="S-adenosylmethionine"
                     /db_xref="RFAM:RF00162"
     gene            14189..15307
                     /locus_tag="PTC08_000898"
     CDS             14189..15307
                     /locus_tag="PTC08_000898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002492361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M20 family metallopeptidase"
                     /protein_id="HDK5682417.1"
                     /translation="MSHQIHGRPELGNEEIFASRLLIENLKEHNFEVERDIAGHSTGF
                     IATYDSEIEGPTISYLAEYDALPGLGHACGHNIIGTSSMLAAIALKQVVDDIGGKVIL
                     FGCPAEEGGENGSAKASYVREGLFDDVDVALMIHPGNETYPTIPTLAVDVLDIKFYGQ
                     SAHASENAEEARNALDAMLSYFNGVAQLRQHIKKTERVHGVILDGGQAANIIPDFTHA
                     RFYTRATTRKDLDVLTSRVHDIARGAAIQTGCEFEFEPIQNGVNEFIKSPLLDQLFEH
                     YATELGEEVSHDDFGYGSTDTGNVSHVVPTIHPHVKIGPRSLVGHTHRFREAAASPMG
                     DDALIKGAKMIALMGAKLIQDQTLLAEIQKEHQHKREK"
     gene            15310..16500
                     /locus_tag="PTC08_000899"
     CDS             15310..16500
                     /locus_tag="PTC08_000899"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-grasp domain-containing protein"
                     /protein_id="HDK5682418.1"
                     /translation="MAHNIQYRSQLTMGEIYDTNIVYSSRPSYVSNPWLAPDEHQSNF
                     LTGRELLIAQLPIIVHEASVTDKLQQLFQLIGRDIPENVITFQDQASYEQTLKQLTEE
                     QSRLIYFQYVHGDNIVDAKHYAMDKQLFKDLNNKSLIPKWTGGQYIPKREIVAFQDFK
                     TAVRQWGLPLVIKPGDDLPTAGGYGVMICYNEDDLEKAIARVEQAEAATDTLIIEQCV
                     EAVDNYCVQFAWHPEDGIVYLGSAKQLTNAYGFYNGNINAINVPEQVIQAGYEIMDIA
                     VKEGFIGIAGFDLLVDQQGVVYAIDLNFRQNGSTSMLLLKDALTGSYHKFYSYFANGD
                     NERFFEAVRHFVEQGVLYPLSYYDGDWYQEVHVNSRFGCIWHADSPEQIEAYEKQFIA
                     RAGL"
     gene            16617..17288
                     /locus_tag="PTC08_000900"
     CDS             16617..17288
                     /locus_tag="PTC08_000900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2750 domain-containing protein"
                     /protein_id="HDK5682419.1"
                     /translation="MSYKNERFYKDILTNEQFFIVVKDKKMIKHRHNDKLLFCFWTRE
                     SLAKAYLDNLNIEYDKIKTMDIDRFATYELDEMFDEEDEALVNVTNDAEGHEIKIVEA
                     TNDLMTDLDNIRIREFVQDVAKTDTVYGLSQKGDRQFMIVYDENDNFDQSHFMPVWSL
                     RKRAEKVAEEDFETFELIDVEGEVFADWLDELRDDNRYVAIDVKPGVVGTIVSAQKLA
                     NELTF"
     gene            complement(17698..18495)
                     /gene="coaW"
                     /locus_tag="PTC08_000901"
     CDS             complement(17698..18495)
                     /gene="coaW"
                     /locus_tag="PTC08_000901"
                     /EC_number="2.7.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011302660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II pantothenate kinase"
                     /protein_id="HDK5682420.1"
                     /translation="MRIGIDAGGTLIKVVIEQDGERTFKTYPTTSLETVANWLNQQAC
                     EDIHMTGGNAKVLSELLDCEPQLFIEFDAAAKGVQILLEEQNIHIQQYIFTNVGTGTS
                     LHFSDNEGQKRVGGIGTGGGMIQGLGYLLTGITDYQKLTEMAQQGDREIIDLKVKHIY
                     KNDTPPISGELTAANFGHVLLNMDKTFTNADKIASVIGVVGESVTTVAIHVAREHQVE
                     DVVYIGSSFQDNPLLQKVVTDYTILRGFKPHYLQNGAFSGALGSLYL"
BASE COUNT         6384 a         3336 c         4034 g         5822 t
ORIGIN      
        1 aacgtcgagt catctgtcta tgtaaattgc tattttaatt attttatgta aaattttgta
       61 cattatagat agaccatagt gtttaaagga agacaataac tgagtacagt acaatttttg
      121 taaacataat ctatcgaaaa actatcttga atgatagagg tgctttggat gacgcaaaac
      181 attaacaact attatttttc actcgtttac acaacgttgc tcgtattttt ttcattgcca
      241 ctcactcaca tttatacgca aaatgtgttg ctgtacggac tcatgacttt cgtgatttta
      301 ctcagtactg tggtcgttga aatgacgtta aaccgaacac acgatttaaa aacgaaagcg
      361 aaacggatgt tatggacgat tgtaccaatt aacgtgattg ttttttcaat atttatcttc
      421 tttattttta agtaaggctg ggaagtgttt cctggccttt ttcagcgact tttccccacg
      481 ctattggtac aaacctgaaa ttttgctatg ataaaactaa tatgcaacat gggggtgggc
      541 acatgttatt ttctatacaa caaggtacga aacgtaaaag tgggcgaacg ttattatccg
      601 acattaactg gcaagtgaac gagggagaat gttggttagt atatggcttg aacggtgcag
      661 gtaagacgac attactgaat atgattaatg cttacgactt tttaacagcg ggtgagattc
      721 aattatttgg catggttcca ggtcagcgtg gctattcggc acatcatgtt cgtgagcata
      781 tcggttatgt gtctggttta ttacgagatc gcttttcagc aggtgaaatt gtacgagatg
      841 tcgtgttgag tggtattttt aaatcaatcg gactctatga acaaccgact gagacacagg
      901 tcgcattggc gcgagagatg ttggcattac tcaatatgca agcatttgaa acacaatatt
      961 tcgggttatt atctacagga gagcagcaac gtgttttatt cgcgcgtgct ttgatgaatg
     1021 aaccgtcatt attaatttta gatgagccag caaacggttt agattttgtt ggacgagaac
     1081 aattgatggc aactttatca cagattcgca aacattttcc acaaacggca gtcatttatg
     1141 tatcgcactt tattgaagaa gtgaccgaag attttacaca cgcactttta cttaagcaag
     1201 ggacaataca aaatcaaggg cgcatagagg cggtattaac aaatcataca ttgtctcaac
     1261 tttttgatat acctgtcgca ttgtatcaac atcacggtcg atatcaaatt gtgaaagttt
     1321 agcgagttga ttgttgcacc atatcttttt tggtgacaca atgaacatat aatttatgaa
     1381 tgaaaggaaa gtaactatgc aaaacgtgaa agcgatcttt ttagatatgg atggcacgat
     1441 tctccgtagt aacaacagag cttctgaaga aacagcacag attttgaatc aattgcgcga
     1501 agagggatat aaagtgttct tggcgacagg acgtgcgtat gaagaaattc acttactcat
     1561 tccagatgat ttatcgtttg atggcattat ttcttccaat ggaacactcg gacatattgg
     1621 agaatcagtg ttgtttgaac atgacttgaa tgttgaagcc gtgaacagca ttgtcacagc
     1681 tgcgcaacaa gatggaatat attatgaagt atttccattt catgacccgc gatttgcttt
     1741 agaacaagac aaagcgtgga tgctgaaaat gatagacggt gacaaaccag aagctgtaca
     1801 tcaaagtgag tggctttctc gacatgaagc gattgaaggc aagttaacat ggcgcgttga
     1861 tattccagct gatgtaggat attcaaaaat ttatttattt catcctgatt tagcacatat
     1921 tcaacaattt cgcgaaaaga tgatggcgca aacagaagaa tggaatattg aagtgtcgaa
     1981 ttcaacaccg aacaatgttg aaacgatggc atatcacatc aataaaggta caggtattga
     2041 agaaatgtgc gcgcattaca atatcgcaat atcggatacg ttagtcattg gagatagcga
     2101 taacgatcgg acgatgtttg aaaaaggtgc tgtaactgta gcgatgacca acgctgcacc
     2161 acacattaaa gcaatgacag attatgaaac agatgtcgat aacaatgcag acggggcagc
     2221 acaatttctc aaaaagcatt tattaaaata gcgatgtcaa aaaacaattc aaatatgaaa
     2281 aaccatcaaa caacaagaca acaatgtttg atggtttttt tacataaaaa gagcctgaga
     2341 taccaaaaca tctcagaccc tttcaaaaat ttaatgtgtg ttaacgataa caaatgataa
     2401 aagattttgt ttatcggtat acaattttta atgcattgat tatataaatg atactgttgg
     2461 cttcaaacac tacacgattt tgtagtgttg ttatgattcg attgccaaaa tggatgagac
     2521 tcccgaggga tgaagttgaa aacaaaataa cgtcatttaa ctttgatagt agctactgtt
     2581 taacgcagta gctgtctgac ttctcaatgc atatactttt gagaagtcta gtcatccttg
     2641 cgggggcagt acgacgaaat ctttgtgaca catgcgattt ctgtactgct cccaaaatcc
     2701 aatttggttt ctatcaagtg aacacttcaa tcaagccaaa tttagttgag gcaagtcccc
     2761 tgggaacgcg aatccatatt agcaatcctc aaaaaattaa attttaaaca tgcgtttctt
     2821 tacgtccgcg tcgcacaaaa tattgaacag ccgtgccaat aatcaataaa taaacaacat
     2881 aacgaagcaa taagaagaca acgtttaaaa ccatcattaa ataatacgcc aagttttgcg
     2941 acatatgtgc caaactttgt tgaattaaga aattaatcgg ctcatttaaa ataataaaga
     3001 ttaagttcaa taataaaata ccgataaaaa agcgtaaaaa tgttcgattg ccatttttaa
     3061 agccagaccc tgcttcttta aaatgtgatt tgatcgttct tgaagcatct tcattcactg
     3121 atacaacaat gtttataatg taaagcgctg caaaccaaac gacgatgctt aatacgaatg
     3181 aaatcagtac aatcaggatg ctgacgatga attgtaaaac gccttgtccc agtcctgtgc
     3241 cgctcaccca gttgaaaatc tgttgaatga gaaatgtcat tcctgcattc accaaggcat
     3301 aaataatggc cgtaacgacg ataaagagca atgttaaaat accaagaata accgttttgc
     3361 cccaaacgcc ttttttgaat gcacggaata aatctttcca gcgtgctttt gtcgtattta
     3421 aaatgctatg atgaatggcg ctaatgacac cgacaaaaaa tgggaaaatc agcattgcga
     3481 ataaaaaaat cgttaatagt attgcgccaa ccatcattaa aattaaggat gttaaatttt
     3541 gttgccctgt caacatcgac atttgccata cttgtagtaa aagattgtat ggcgacatgg
     3601 ctaatattgt cagtaataat aatattgcaa aaccaatgaa agcaattccg aatagcctag
     3661 ctttttgatt ttgcgtattg tgccaaaata gtttcgtaaa tgtaaacaac tgtgagcact
     3721 cctttcgcat atacacaaca ttatcaaaaa tcggtatcgt ttgaaaacaa aaaagggcaa
     3781 aaatggattc aatttttgtt taaaatgtaa aatgattgtc aagcatgcac acaatattca
     3841 agtgaaagcg ctactttttt gataaaataa tgtcgaaggg ttgtggagcc gtaaatgaag
     3901 atttcaaatc aaaaaatata tgagcaaatt gcagacattt tgatccaaca aattgaagag
     3961 ggcgtgttaa aagagggcga ccgtttacct tcaattcaaa agttggcagc agagtatggg
     4021 gtgagtaatg cgtcgatacg tgaagcgctg aatgcattac gaatcatcgg attgattgat
     4081 attaaacatg gatatggcac tttcgttaag caaaaacagc cgttactttt tgactttacc
     4141 tcgcaagcac ttacacaaaa aagggtgcgt gaaatcttag aattgcgtga agtggtagaa
     4201 gttgcgacgg cgaaattggc cgcttcaaga cgaacagaag aagaaattct agtgatggaa
     4261 gaagctttag atgagatgaa tggggctatt gaacgccatc aatctggaga agaagcagat
     4321 ttgaaatttc atctagctat cgcgaaagcg tcggataatc atttgttgta tgagttgttg
     4381 aataatatcg cggacttgat tcaacagacg atgaaaggga cgcgacacat ttatatttac
     4441 agtcgacaaa agacgatgga aaaattaatg gaagagcata gtgtcatttt agaagcgatt
     4501 aaaaataaag acagtgtggc atctgcaaac ttgatgacgg cacacttagc tgaaattcgt
     4561 caaacgctcg ttgaaaacta tatcgtcaat gagcattaat gatgagaaaa tttgcgtata
     4621 aaaacaacgt agcgatttaa tagaaaataa tatatccgat atgaatggta aagtgctttg
     4681 aattttagaa agctgtacac tttctaaaat ctgaagcgct tttattttag atgtgttaca
     4741 atgacaatag attaatgtgc tattttgttg agtcatcgca tcgatggtct ggtgcgcaac
     4801 agaacccttt taagttttac aggagtcgct gatagcgcaa ttgaaatcgt gttaacattt
     4861 gagttgattt caatttaagt tatccaaatc gggatggcac gatgaaatct atgcgtatat
     4921 atggtttcta tgtcacgccc acaaatcata tctgacatac ataatgaata tgagcaaact
     4981 atgaaagaat gagaggtgat ccccaatgcc attaatactc gaaccagtgt ttcaagaaag
     5041 aatttggggt ggaacaaatc tcgcacaatt tggttatgat ttaccgagtg accatactgg
     5101 ggaagtatgg ggaatttcag ctcatccaca tggtgcgaac cgcattttga atggcccttt
     5161 taaaggacag acattagatg aggtgtggga aaatcaaccg aaattgttcg gtgaatttcc
     5221 gactaagaaa tttccattat taacaaaaat attagatgcg acagagaagc tatctgtcca
     5281 agtgcatcca gatgatacgt atgcatacga acatgaaaat ggtgaatatg gcaaaacgga
     5341 atgttggtat attcttgatg ccaaacaagg tgctgaaatt atttatggca cacacgcaga
     5401 ctcgcacgaa gcgttaaatg agatgttaga gcgccgtgaa tttgagcgtt tgtttaagcg
     5461 tgttcctgta cataaaggtg attttttctt tgtacctgct ggaacggtgc acggtattgg
     5521 tgatggcatt atgattttag agacacaaca gtcatcggat acgacttatc gtatttatga
     5581 ttatgatcgc gtggataaag agggaaagaa gcgcgaactc catcttgaaa aatgtaagga
     5641 cgtcattcaa attggtgatg aaagcccgaa tgtcattcca caaacggaag tcatcgaaaa
     5701 tcacaaatgc acgatttttg tacaaaatca cttttttaca gtcgcgaaat gggaaattag
     5761 tggaacattg aattatatga agcctcgaga gtttgtgtta gtttctgtgc ttgaagggca
     5821 agggcaactc atttctgatg gcgaaattta tgatattcaa aaagggaatc atttaatttt
     5881 aacagcagaa gatttagata acgtttttga aggcgatttt acgctgatgg tgagttacgt
     5941 ctaaagaata ggagattgtt atgaaaattg gactgtatat cgcattaatt tgtggcgtcg
     6001 tggcaggtgc aacgattttc tttcaagcgc cgctatttcc gtctctgatt tttccgatta
     6061 tcattggaat ggtaggaatc attgcgacgt tatggacttt acctcaaagt gacattagcc
     6121 caatgttaaa gctcggcggt atcatgatta atttatttcc agtagttgct ggcatttttc
     6181 aactcatgaa cggataaaaa aagcattgtt gtttgatgac aatactttta taataaatga
     6241 gataaaataa ttaaaaagga gatacattgt taccatgaca gcagaaacga attatttttg
     6301 gctgaattgt ggttataatc gatggaatca caatgaacca ctcgttggac aaaaaacagt
     6361 atttgaatca ggagcacagt ttaatccaac acaagggttt cgtgctttta aacaagccaa
     6421 agtcggtgat agagtcatct tctaccaagt gcaaacagat gccggtttac tcggttgggg
     6481 tgagattacc aatgttcgaa caggggcgca aaataaaata catgttgagt tcaaatttgt
     6541 tgaaacattt aaagcattaa cgacagatta tctgaaaaga agtgagccgc tagaatttcg
     6601 tatgaataat atgaaagaaa cattgttcaa taagatttct tatgatgaat tcgaattgat
     6661 taaagggcta ggtagtggtg atatatctat tccacgatac ttttttatgg cggaaactga
     6721 aaactttgag tcagatgaaa cgtatacaat ctatacacat acgattaatg ggattaaaag
     6781 aaatggctat catcattaca cacaattaga agtcggtgat caggttgtca tctataaccg
     6841 ttattctaac caatctgtca ttggtcgtgc agaagtcgct catcatattc atacgagacc
     6901 accagaagcg ggaagaacaa acagcacagc gattgaaatt cgttacatag aagatattcc
     6961 gcctgtcagt ttgatgacat taaataagca tcctaaactt aaaaatctgt acttcttaca
     7021 agaaaatgcg aaacaagcca ttgcaagtct gacaccaacg caattcgatg cgattatgga
     7081 aatgagtgaa aatgacggtt taaaagggca attcgaagcc gtgacacata cagaagaagg
     7141 tcaacaagtc gatgatatta aaccgttcat tttattatta gcgcacgata aagcagaagg
     7201 gttagcatca gctaaaacgc ttgttgaaaa agccaatgct acgccagtca ttacagtggg
     7261 acatcctgac ttttctgaag agatgttgta cggcagatac ttacctaatg aagcgggtgc
     7321 actgtattat agagaaggtt ttattacaga gctcatgcct aaaacagatc gccaattttt
     7381 agtcattgat caattcgaac gtatcgatgc agatattttt caaacgtaca ttaacgtcat
     7441 agaagggcat gaagtgacgt taccacgtta taataaaaat ggttcaatgg tgaaatggag
     7501 tagggagaaa gactcatttt atcggtttaa tccgaactgg catattgtag gtgtgactta
     7561 tttgacagcg caagaagtga aggagaaata tccgtctcag tttttaaaat atgcacgtat
     7621 tgtacaagtg aagcattaat gaaaaaagac attcggttaa gaagctgaat gtcttttttc
     7681 atttttacat tgtcagagtc atacaaaggt gactttcatc gtactgccta ttctaaaacg
     7741 ttgtaataat aggtaatgct tcccagcatt aaaaaatacc ttcactactc taaaaaatag
     7801 cgagggtata ggtgtataaa gtgcctacgc gtcttcatta accctactat agtattgtaa
     7861 tgttaatgtg tcgcaaaact atcccaaaat attattatat gcctttttgg atttagcgtt
     7921 ttatgcgaat cacgtgataa actatccaaa agatgagcac ccaaataaat ccaaaacttt
     7981 tataactacc tggtaagtaa aatacagtaa gtaaaatcaa aggtacaaaa ataaataaga
     8041 gtccaaaata tatcttccaa tctattttgt gttgacgtgc caataaatcc tcacctcctt
     8101 tgaatagttg tttcaattgt atcaaagctc tcttaagtgt ccaatgagta aaaaataaac
     8161 gtaccattat gccttggtga atagttatta catctccaac aacgtttcta acacatttaa
     8221 aatgaaaccg ctttctaaat ggatggaaaa atgtgtataa tgacttttaa ggaaaagcga
     8281 aaaataatat tgaagaattc ctagtgctta tcgtattata tttatacata ttaatgaata
     8341 aatataattt cgaggggaga gggattcaaa tggaaaagaa agtcaaattt aaaaaagata
     8401 tcaatgtgtg gtacgccttg ttaacactta cgattatgat tagtgcgatg ctatacacag
     8461 tcgttaagct ccaacagcca ccccacctac ctttactgat tggaacatct gttgcgatta
     8521 ttattacaat ggcgcacggt tatcgttggg aagaagttga agaaatgatg tataaaggga
     8581 ttcgtcatgc tttgccagct gtcgtcatta ttatgctcgt cggtttgatt atcggggcat
     8641 ggattggcag tggtgtcgtt gcggcaatga tttactacgg tttaaaattg atttccccta
     8701 catatttctt agctgtggtc gtggtcattt gtggtatcgt atcgttagct attggtagta
     8761 gttggtctac gatggcgacg gtcggtgtgg catcaatggg tattggtatg agtatgggtt
     8821 tgtcaccagg tatggttgca ggtgctgtga tatcgggttc atattttggt gataaaatga
     8881 gcccactttc agatacgacg aaccttgctt cagggttaac gaatgtcgat ttatttgaac
     8941 atattcgtca tatgttttat acgacaattc caggtttggt tatttcattg attattttct
     9001 ttgtgatggg acaaatgtat ggcagtgatc acttagaaca acaaaaaatt gatacgatta
     9061 tgaacggaat tcaagatgca tttgtcattt caccatggtt gttgttaata ccccttattg
     9121 tcatcattgc tgttgctttc agagtgccag ccattccagc aattgtttta gggattgtgt
     9181 taggattctt tacgcaaatt tttgtacaag gtgatacact cgttaacgcg gtaaaagtgt
     9241 tacagacagg ctttacaatc gattcaggta ataaaacgat tgacgaactg tttaatcgtg
     9301 ggggcctcga atcaatgttc tatacgattt cactgacatt ggttgcgatg acgttcggtg
     9361 gcttactgga atattctggc atgttaaaag cgctgatttc tgtcgtatta aagtttgcga
     9421 aaaatacagg ttcattgatt gcatctgtca tcatttcatg tgtagggaca aacttatctt
     9481 gttctgaaca atatatttct attatcgtgc cgtctcggat gtatgtcgca acatttattg
     9541 ataaaggact ccaccctaaa aatttgtcgc gtgctttaga agatggcgga acgttgacat
     9601 ctgtatttgt cccttggaat acgtgtggtg tgtttatctt tactacatta ggtgtgtctg
     9661 tcagtcaata tggcccattt gcgatattga attttattgt gccaattatt tcgattattt
     9721 acggctttac aggttttaaa attgataaat tgtcaccagc tgaaaaaacg tattatcaac
     9781 aacaagaagc aacaaattaa gcaaacactg caaaatgata aatataatga aaaatgggta
     9841 taataactag aaagaggtga tgatatgcca atcgtttatt acgatgatcg ttgtatttat
     9901 tgttataatt atgccatttg gttaatacgt cacggacttt ctagaagtta tcagtttgtg
     9961 ccgttaaaaa gtccagcagg ggaggcgttg aaaaaagcgc accctgaagt gttggaatat
    10021 aatagtgtgg ttctccaaga aggggaccat ctcacatttc aatctacagc gattgcgaaa
    10081 ttgattttta cgttagatgg ttataaatgg ttagctgcat tactgtggct cgttccaaaa
    10141 ccgttgcgta atttaggata tcaattgttt gcggataacc gtgataaaat gtggaaaacg
    10201 acttgggcca aagccaatgc ctatgagcag tcctttttta aacaaaccca ggttcctaca
    10261 aaagaataac tcaacgtgca aaaaccccga taacggctgt aatggttatc ggggctattt
    10321 tcatttctgt ttatgttggc attagataac aaaagtaatg gttgtgtaat tagctcgaaa
    10381 ggcaagcccc tcataccaat tgtgcaactt tcaaaagggt tatccatgag aaatctttgc
    10441 cattaaatga atacgcacta aaacaatgaa aattttagtt ccatgccttg tttcatcatt
    10501 attcagcgat ttctaatgcg acttccatca tttgtgtaaa tgaattttga cgttcttctg
    10561 ctgttgttgc ttcatcgcga agtaaatggt cactcactgt gaaaataccc aatgcttttt
    10621 tgcctgcttt agttgcattt aaatataaac ctgcagattc catttcaaca cctaaaatgc
    10681 ccatttcaat ccatttttgg ttgaagtctg ggttcgcatt gtagaatgtg tctgacgata
    10741 aaatgttacc tacgtgggca cgcgcaccaa ttgcatctgc tttttctttc gctttcacga
    10801 ctaaatcaaa gtcagcgagt ggtgagaagt gacctggaat ttggaattga tcaacgtaat
    10861 cagagtttgt ggatgcccct tggccgataa taatatcgta aagttgaata tcttcttgca
    10921 ttgcgccaca agaaccgata cgaataatcg tgtctacatc aaagaaattg tatagctcgt
    10981 atgaataaat accgatactt ggaatcccca tacctgatcc cataacagag atttctttgc
    11041 ctttatatgt acctgtatag ccaaacatgt tacgtacgtc gttaaactgc tcaacgtttt
    11101 ctaaaaagtt ttcagcaata aactttgcac gtaatggatc acctggcatt aagacagttt
    11161 ttgcaatttt tttaccatta ggttgaatgt gtggtgtgcc ttgagtcatc taaaacatct
    11221 ccttaattcg ttattatcac tttaaagata acagatgtat cgctaaatgt cgacgaagtt
    11281 ttgaagggac acatgaatga aagttgatga attgacaaat aatgaggaat tctttcgttt
    11341 caccaatcgc agacattcgt atataataaa agcgtataca acaatatggt aactataaaa
    11401 tgatatagaa aagagggaat agccatgaga atggtggata ttattgctaa aaaaagggat
    11461 gggcatgctt taacgaaaga agaaattgaa tttgttgtca atggttatac aaatgatgac
    11521 attcctgatt atcaaatgtc tagtttagca atggcaattt ttttccaaga tatgactgat
    11581 gaagaacgtg catacttaac aatggcaatg gtggaatcag gtgaccaaat cgacctttct
    11641 aacattgaag ggattaaagt cgacaagcac tcaactggtg gtgtaggtga cacaacgaca
    11701 cttgttcttg cgccattagt tgcagcatta gatgtccctg ttgcgaaaat gagtggtcgt
    11761 ggtttaggcc atactggtgg aacgatagat aaattagaat cagtagaagg cttccatgtt
    11821 gaaatttcag aagaagcgtt cgtgaagcta gtgaatgaag ataaagtggc ggttatcggt
    11881 caaacaggta atttaacgcc tgcagacaaa aagatttatg cgcttcgtga tgtcactgcg
    11941 acagtaaact ctattccatt aattgcgtca tcgattatga gtaaaaaaat tgctgccggc
    12001 gctgatgcaa tcgtattaga cgttaaaaca ggtaacggcg catttatgaa aacagttgaa
    12061 gatgctgagc aattggcaca tgcaatggtt aaaattggta accaagttgg acgtcaaacg
    12121 atggcgatta tttctgatat gagtcagcca ctcggtcgtg cgattggtaa tgcgcttgaa
    12181 ttacaagaag cgatcgatac attgaaaggt gaaggtcctg aagatttaac agaacttgta
    12241 ttaactttag gttctcaaat ggtcgtactt gctcaaaaag cgaaagattt agatgaagca
    12301 cgtggtatgt tacaagaagt gattgataac ggtaaggcgc ttgaaaaatt caaaacgttt
    12361 ttaagcaacc aaggtggaga cgcatctgtt gtcgatgagc catcaaaatt acctacagca
    12421 caatatcaat tcgaattacc agcaaaacga agcggtgttg tttcagaaat gattgccaat
    12481 gaaatcggta ttgcttccat gatgttaggt gcaggtcgtc aaacaaaaga agatgtcatt
    12541 gacttagcag taggtcttgt attgaataaa aaagtcggtg atcgtgttga agaaggcgaa
    12601 tcattattga caatttatgc gaatagtgaa gatgtagaac aagtcaaaca aaaattgtat
    12661 gataacatta cgatttcaga ccacgcagaa cagccacagc ttattcatac aatcattact
    12721 gaataaaggg tgataggatg aaacaattag gtcgcattgt attaggtctc gcatttatgg
    12781 ctattggtgt cttgcatttc acgaaagagc gccaatttag aaatattgtg ccaacgtatt
    12841 tacctttacg taagacagct gtacttgtga caggagtgtg cgaaattgtg attggtgcgt
    12901 tattagtgtt gcgacgcccg tcagacgcat tgaaaaattg gattaatgca tttttacttg
    12961 ccgtttttcc agccaacatt tacatggcac gtaaaaaatt gccgttaggt gacaaaccat
    13021 tatcggatac tgcgagatat ggacgtctcc caatgcaatt tgtactcatg tatatcatta
    13081 agaaattata atgaaaaata aaccgaggaa ccacacattg aaagtcgtgt cgttgctcgg
    13141 ttttttgaat gtttatttac ctgtaccaaa gacatcatgc cattggtcac gtttatctaa
    13201 aaaggcttgt gcgatttctt ttgcgccttc taatgagtgt gaagcagccc aaccgcattg
    13261 aacttcattg cacgcaggga cttcatcagc ggctaaaaca tcttgtaacg tttgttcgac
    13321 aatgtttaat acatcatcat aatcggtatg gttaatgaaa gagacgtaga accctgtttg
    13381 gcaacccatt ggacttaaat cgacaacctt gtctgaatgg ttacgaatgt tttcagccat
    13441 taaatgttct aaagaatgga gtccaggcat ttccatatgt tctttgttcg gttgtttgaa
    13501 acgaatatca tatttgtaaa tgtcatctcc attgagccct tgcattttac ccgcaagacg
    13561 aatatatggt gcaaccactt tcgtatgatc taagttaaaa ctttcaacgt tcatttttgg
    13621 cattggtatg acctccttca tgtttaaatc cattttaaca tattccaatt aagatgaaag
    13681 gggggacaaa gtgtttaaat gccgatataa tagggaaagg agctttaaac ctattattac
    13741 gagtggttta atagggatta ttgtttttaa aaaatttttt gtaagatagc ataaaggcgt
    13801 ctcgaaatga aaatgtattg caaaaagggt aaaatatagt atgaaaattt tgaagagtgt
    13861 taaaaatgac atgacaaagt acggaaagtt cgttaaaata attacaaaat tgaatcaata
    13921 tttatcaaga gtggtggagg gaattggccc gatgaaaccc agcaacctca tctaacggcg
    13981 ataaaggtgc gaattccaac agtgtaaatg ctgaaagata aatgaaggca aagatgttat
    14041 cacatatata catcagtcac acttatcaat atttgtgttg gatgtaaatg gggataacat
    14101 tttttgttta aggaggagta acacggtgac aacagtagag caacgtattt tagattatat
    14161 cgatcaacat agatggactt atatagatat gagtcatcaa attcacggac gtccagaact
    14221 cggtaacgaa gaaatttttg catcgcgttt gctgattgaa aatttaaaag aacacaattt
    14281 tgaagttgag cgtgacattg ctgggcattc tacaggtttt attgccacat atgactcaga
    14341 aattgagggg ccgaccatta gttatctcgc tgaatatgat gcattgccag gtttagggca
    14401 tgcttgtggt cataatatta tcggtacatc aagtatgtta gcagcgattg cattaaaaca
    14461 agtagtagat gacattggag gtaaagtcat actgttcggt tgtccggcag aagaaggtgg
    14521 cgaaaatggg agtgcgaagg catcatacgt acgagaaggg ctctttgatg acgtcgatgt
    14581 tgccttaatg attcatccgg gtaatgaaac gtatccgact attccgacac ttgctgtaga
    14641 cgttctagat attaagtttt atggtcaaag tgcgcacgct tcagaaaatg ctgaagaagc
    14701 acgcaacgct ttagatgcga tgttgagcta ttttaatggg gtcgcacaac tccgtcaaca
    14761 tattaaaaag actgaacgtg tgcatggtgt cattttagat ggcggtcaag cagcgaacat
    14821 tattcctgac tttacacatg cgcgctttta tacacgtgca acaacaagaa aagacttgga
    14881 tgtcctcact tcaagagtgc atgatattgc ccgtggtgcg gcaatacaaa caggatgtga
    14941 atttgaattt gaaccgattc aaaacggtgt gaatgaattc attaaatcac cattgttaga
    15001 tcaattattt gaacattacg caacggaact cggtgaagaa gtcagtcatg atgattttgg
    15061 ttacggctcg actgatacgg ggaatgtcag tcatgtcgtg ccaacgatac atccacacgt
    15121 caaaattggg ccaagaagtt tagtcggtca tacccaccgt tttcgtgaag cggccgcaag
    15181 tccaatgggg gatgatgcac tcattaaagg cgcgaaaatg atcgcattaa tgggggctaa
    15241 attaatacaa gatcaaacgt tattagcaga aatacaaaag gagcatcaac ataaaaggga
    15301 gaaatgacaa tggcacacaa tattcaatat cgaagtcaat taacaatggg agaaatttat
    15361 gatacgaaca tcgtttactc gtcaagaccc tcatatgttt cgaatccctg gctcgcacca
    15421 gatgagcatc aatccaactt tttaacaggg cgtgaattgc tgattgcaca attgccaatc
    15481 atcgttcatg aagcgagtgt caccgacaaa ttacaacagt tattccaact catagggcga
    15541 gacattccag aaaatgtcat tacgtttcaa gaccaagcaa gttatgaaca gacattaaaa
    15601 caactgacag aagagcaatc acgtttaatt tatttccaat atgtccatgg agataatatt
    15661 gttgacgcga agcactatgc gatggacaaa cagttattca aagacttaaa taataaatca
    15721 ttaattccaa aatggacagg tggccaatat atacctaagc gtgaaattgt cgcatttcaa
    15781 gacttcaaaa cagcagtccg acaatggggg ttaccactcg tcattaaacc aggagatgac
    15841 ttgccgactg cagggggcta tggcgtcatg atttgttata acgaggatga tttggagaaa
    15901 gctatcgcac gtgtcgaaca agcagaagca gcgacagaca cgttaattat cgaacaatgt
    15961 gtcgaagctg tcgacaacta ttgtgtccag tttgcatggc accccgaaga cggcatcgtg
    16021 tacttaggtt cagccaaaca attgacgaat gcatatggtt tttataacgg caacatcaat
    16081 gcaatcaatg tgccagaaca agtcattcaa gcaggctacg aaattatgga catcgcagta
    16141 aaggaagggt ttattggcat cgcgggcttt gatttgctcg tcgatcaaca gggtgttgtc
    16201 tacgcaattg atttgaattt tagacaaaac ggctcgacaa gtatgttgtt gctcaaagat
    16261 gcacttacag ggtcatatca caaattttat agttattttg cgaacggtga caacgagcga
    16321 tttttcgagg ccgtacgtca tttcgtggaa caaggcgtcc tttatccgct ctcgtattat
    16381 gatggggatt ggtatcaaga agtgcacgtc aattcgaggt ttgggtgtat ttggcatgcc
    16441 gacagtccag aacaaattga agcatatgaa aaacaattta tagcccgagc aggcttataa
    16501 aacacgatcc actgaggtat gttatagttg aaagagaaga tatcatcgaa atttgacgaa
    16561 tagcgatgtc tggtttatat ttgtcattga ttttgattgg aaaaaggagc agagtcatgt
    16621 catacaagaa tgagcgtttt tataaagata tacttacaaa cgaacaattt tttattgttg
    16681 tcaaagataa aaaaatgatt aagcaccgtc ataatgacaa attgttattt tgcttttgga
    16741 cacgtgaatc tttagccaaa gcgtatttag ataatttgaa tattgaatac gacaaaatta
    16801 aaacaatgga tattgaccgt tttgcgactt atgaattgga cgaaatgttt gatgaagaag
    16861 acgaagcatt ggtaaacgtg acaaatgatg cagaaggtca cgaaattaaa attgtagaag
    16921 ctacaaatga tttgatgact gatctagaca atattcgtat tcgcgagttt gtacaagatg
    16981 tggcgaaaac agataccgtt tatggtttaa gtcaaaaagg cgaccgtcaa tttatgattg
    17041 tttatgatga aaacgacaac tttgatcagt cgcattttat gccagtttgg agcttgcgta
    17101 aacgtgctga aaaagtagcg gaagaagatt ttgaaacatt tgaattaatt gatgtagaag
    17161 gcgaagtatt tgcggattgg ttagatgaat tgcgtgatga caatcgctat gtcgcaattg
    17221 atgtgaaacc aggcgtagtg ggcaccatcg tctcagcaca aaaactcgcc aatgaattaa
    17281 cgttttaaat agaatgaggc gtattagatt gggaaacagc tgatttcggg agtagtcact
    17341 caaaagatgt aaattcaagg taatatggta agctgtttga tgatgagagg ttgagatgat
    17401 gtgatctcag cctttttatt tcagatgagg aatgtaatga aagaaagcat aaataaaagg
    17461 ggaattatat ctctttataa tgacttttga aacgttgaat agaatggcaa ttgaggtgga
    17521 ttacataaaa aatggattat cttcatatta aaagattgcc tcattcctac gattaaagca
    17581 tatgaaaaag ctaggaacgt atccattgcg cctagctttt taactgtttg atagagatga
    17641 acgatataat gcaaaatcta ataaagcgtc atctctatac aaagatttaa aatgatttta
    17701 taaatatagt gaccctaatg cacctgaaaa agcaccattt tgtaaataat gcggcttaaa
    17761 tcctcttaaa atcgtataat ctgtcacaac cttttgaagc aatggattat cttggaatga
    17821 cgacccaata tacactacat cttccacttg atgttctctc gctacatgaa tcgctacagt
    17881 cgtcacactt tcaccgacaa ccccgatgac agaagcgatt ttgtcagcat ttgtaaatgt
    17941 tttgtccata ttaagcaaca catggccgaa gtttgctgct gtcaattctc cagaaatagg
    18001 aggtgtgtca tttttataaa tatgtttcac ctttaaatca ataatttcac gatcaccttg
    18061 ttgcgccatc tctgtcaact tttggtaatc cgtaataccc gttaataaat aaccgaggcc
    18121 ctgaatcatg ccgccacctg taccaatgcc gccgacacgt ttttgcccct cattgtcaga
    18181 aaaatgaagt gatgtcccag taccgacatt cgtgaaaata tattgctgaa tatgaatatt
    18241 ttgttcttct agtaaaatct gtacgccctt tgcagctgca tcgaattcaa tgaaaagttg
    18301 tggttcgcaa tcgagtaatt cgcttaaaac tttcgcattg ccccctgtca tatgaatatc
    18361 ttcgcacgct tgttgattca accagtttgc tacagtttct agtgatgttg tgggataagt
    18421 tttaaaagta cgctcaccat cttgttcaat cacaactttg attaacgtcc cacctgcatc
    18481 gatacctatt cgcatatctg tcacctcaaa ataattgttt atcaccaata tatactatat
    18541 gataatgacg aaattacaag actaaatttg ataacaaatg aaggtgtatg atgtaattaa
    18601 gtccatatat catccgtgat gtggaagaag tagcacaatt ttatcaaaag acatttggtc
    18661 gggcgctgaa atgtttaaac gagcatgagg gaaagctgct tcatgcagag ttagaaatta
    18721 cagcgcaaca ttacgttgat cttcaaatta tggaaaaccg attgaccgtc aaggcgacca
    18781 tttaatttta acttttgacc aattagagga acaacagcgg attgatgagg cgttaagtga
    18841 agcgggcgcc ccccatatgc cgctccaaaa acattcttcg gtgctataca tagtcaagtc
    18901 accgatcgct atggcatcaa ctggctcatg aaccattttg aataaagata aaaagggata
    18961 gaatataaaa atgtttggta ctatagatac aatctgtttg ttgaacttgc ctttcctatg
    19021 atttgtgatt tttgattgcc ttcaaggctt cgctttccga tgtgttggtc cttcaactca
    19081 ttagaactta attaaacggt tacatttgcc gaggcattag tggattttgg gagcagagta
    19141 gaaatctcat gtgcaacaaa gatttcgtct tactgtcccc gcaaggctga ctcgacttct
    19201 taaaagcgca tgcattgaga agtcagacag ctactgcgat aaacagtaac cattattaaa
    19261 gtaaagaagt cactctaagg cgtatgcaca cattccctca ggaggctcaa ctttcaaggc
    19321 aatctacatc acatacagtc acttagggca agtttctaaa atgaagacac ccaatagcgt
    19381 ccatgttttt acgtccaagt cctcctcatt tttcgacagt ttaatcatca ttaatggata
    19441 tcagcccata aagaaaaaaa catactaaga ttagctgtga agaaatttat gacgatagat
    19501 ttcttcacag ctatttttta tagttgtaga gagaagtaga tcgcgcagtc tcgtggatct
    19561 ttgaatccgt aaaaaa
//
LOCUS       DANHOL010000036        18680 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.036, whole genome shotgun sequence.
ACCESSION   DANHOL010000036 DANHOL010000000
VERSION     DANHOL010000036.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 18680)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18680)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18680
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.036"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(1..928)
                     /locus_tag="PTC08_000902"
                     /pseudo
     CDS             complement(1..928)
                     /locus_tag="PTC08_000902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001108473.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
     gene            complement(1000..1203)
                     /locus_tag="PTC08_000903"
     CDS             complement(1000..1203)
                     /locus_tag="PTC08_000903"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682421.1"
                     /translation="MTDISFLEPGLYLSVIHLEDDEIILYVHYDSGMLCSNTGTDSGV
                     AVKLNVTQHAFQSFIDELTGIVK"
     gene            1338..1670
                     /locus_tag="PTC08_000904"
                     /pseudo
     CDS             1338..1670
                     /locus_tag="PTC08_000904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166937.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            1851..2243
                     /locus_tag="PTC08_000905"
     CDS             1851..2243
                     /locus_tag="PTC08_000905"
                     /inference="COORDINATES: protein motif:HMM:NF012870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
                     /protein_id="HDK5682422.1"
                     /translation="MTKALVISALNKAYTIQEPREGLIHHSDRGSQYASIEYQNLLRE
                     EGIQSSMSRIENCYDKACIASFHSIIKKELIYHQNYKIRNGAMYSIVAYLLTFYNSKS
                     VHSTLNDMSPIEFEKKYATKSPSPTCTF"
     gene            complement(2481..3671)
                     /locus_tag="PTC08_000906"
     CDS             complement(2481..3671)
                     /locus_tag="PTC08_000906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDK5682423.1"
                     /translation="MSIKTASLLLFNSVSSVGSRIFSFACAFYILQHTDSTALFTLYL
                     TAIVISTLVTEPLLGLFAGRYHNKMMVIMIQLLNVIFLFVFTIVFDMFFNYIIILGIM
                     LNMTDATIRMFIDANVNHIIKGDVERYTSLTLTTNTAIHFLAPIIGGMMIAFFNIETL
                     ALLNLITEALAVLFVLNLPLDKEVKFENKQMKKSLREGYRYLKQQKALKHFFIIMVAL
                     HFLVAVFSIGMPIAAVQFMQLSAPQYGVVVAGFTVGMVAVSVWLGMNSEKDNLKSTYE
                     RAMLLQCVTVLILGVMVVFQMNTAVAMLLLFILNGLMGLSQPLAIIPTSNYLQEAIEE
                     KYRGYVMTFKQTLMDVSYPVALLFFGVVLNHHQAVVYFVVTVLIIVLYIYFSFIMRKG
                     FRIV"
     gene            complement(3897..4787)
                     /locus_tag="PTC08_000907"
     CDS             complement(3897..4787)
                     /locus_tag="PTC08_000907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HDK5682424.1"
                     /translation="MEPIKHIHHISAIVGHPKENKDFYEKVLNLRLVKKTVNFDDPGT
                     YHLYFANDNVDPGTVMTFFPWANAYKGRVGSGQVGRIAFRIPKNSKDYWVQHLNDNNV
                     ETTETELFRRPTIEFEDIHGLDLALVESDEESDTNKILGFHGSVLLSLRPVETLKELV
                     DDLGLTELEHDADHFHFETAGDLKHHIIIPKKPLPEGRWGVGTVHHIAWSVDNDEQHL
                     AWQKYLMSQGYHVTEVKDRNYFKAIYTKERGHIIFELATIPPGFDRDEPKDQLGQKIM
                     LPPQYESQREQLLANLPELD"
     gene            complement(4803..5246)
                     /locus_tag="PTC08_000908"
     CDS             complement(4803..5246)
                     /locus_tag="PTC08_000908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(4Fe-4S)-binding protein"
                     /protein_id="HDK5682425.1"
                     /translation="MVKQYTGENINVYFEPKRCVHATECIRGLGEVFDVEKRPWVQPD
                     NAAVEDVIKVVERCPSGALTYELPSNQQETHPETRVAYGDDGEIFMYGDFTLVHNGEV
                     MHLNRAILTSDASNTDNPPFYSKSFSGQGDKEQFYKLIQDEQFEK"
     gene            5392..5877
                     /locus_tag="PTC08_000909"
     CDS             5392..5877
                     /locus_tag="PTC08_000909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682426.1"
                     /translation="MEGQIIPGVGTKYSLTTANNDIVHVILHYNGKREIYITDEDEDV
                     LANIGLNETEAREIALKLMDVNHDTMEKQAFERFSLLRKQMLVDWIKVSQLSPLKGIN
                     IEEAEHRVPNGVNIVGISRGSDIIAKPESTELIHEGDILLVIGYNEAVSEFEAVCRPE
                     G"
     gene            5883..7055
                     /locus_tag="PTC08_000910"
     CDS             5883..7055
                     /locus_tag="PTC08_000910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HDK5682427.1"
                     /translation="MHLFDLSELLLSGLLIFLLFISAFLANRISAPDIIIFLLIGIVL
                     AFFVSHSEILEFAAETGIVLMFFMLGMEFPIKQLKDLALNIYKAGLLDLLLSFGVTVI
                     LVLIMGQPIEIALLLGGVVYATSSSITVKLLEKNNRMTAKDSNFILGLLVFEDIVSPL
                     LVTIIASLFIGEALSATSLSFVFVKIVLLLVGAILLGQVVFKKLGAFVEKYVSEDFFI
                     LFMVGLSLTYAGIAIQLGLSEVFGAFLAGIMVAETRKINLLQQSVRNLRDLLMPIFFI
                     NFGLSIQLTSGISMVNVLLVLIVWSVISKIIVGYVGGKQFGLNNVPAMRAGLSFTQRG
                     EFSMIIAGFASTQIKTLSGVFILISAIIGVTLFQFAPKIAKRLFKKEKKASLPGSV"
     gene            7488..8585
                     /gene="ugpC"
                     /locus_tag="PTC08_000911"
     CDS             7488..8585
                     /gene="ugpC"
                     /locus_tag="PTC08_000911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sn-glycerol-3-phosphate ABC transporter
                     ATP-binding protein UgpC"
                     /protein_id="HDK5682428.1"
                     /translation="MPELKMSHVKKVYDNNNAVVKDFNLDISDKEFIVFVGPSGCGKS
                     TTLRMIAGLESITGGDFYIDGQRMNDVEPKNRDIAMVFQNYALYPHMTVYENMAFGLK
                     LRKFDKAEIDKRVKEAAEILGLTDYLNRKPKALSGGQRQRVALGRAIVRDAKVFLMDE
                     PLSNLDAKLRVQMRTEILKLHHRLNTTTIYVTHDQTEALTMATRIVVLKDGHIMQIGT
                     PREIYDTPDNIFVAQFIGSPAMNMIDVTVTAQGIQIGTKLFKLAHKKFEKLKEKGFEN
                     QTVTLGIRPEDIHEEPIFIQASPETAFESKVIVSELLGSEIMVHTQFEQHEIVAKLDA
                     RTKVSAGETLTLAFDMNKCHFFNPATGNRIV"
     gene            8598..9857
                     /locus_tag="PTC08_000912"
     CDS             8598..9857
                     /locus_tag="PTC08_000912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HDK5682429.1"
                     /translation="MNKMLKAALLLITVLVVLTACGPNRSQKDIESALNRDNRKEKPE
                     QLTMWVDGDAQMAFYKKITVAYTKKTGISVRLVNVAQNDQLENLSLDAPAGKGPDLFF
                     LAHDNTGSAYLQGLAAELDFTDEQLKGFNKQALRALNYDNKQLALPSIVESTALLYNK
                     KYVKTAPKTIQEVEANADRINKPADHQYGFLFDGRDPYFNYPFMFNSNNYVFKKHGDQ
                     YDVHQTGINDPQVIKNGKRLQKWYEKGYLPKAANHNIMIGLFKDGQVGQFVTGPWNLT
                     EFQQTLGDDLGVTTLPSDNGMKMRPYLGVRGWYLSEYSQSKYWAKDLMLYLTSRDTLQ
                     KYTDERNEITGRLDVKSSNPNLKAFEEQAKNAEPMPNIPEMRQVWTPMANASTFISEG
                     QDPKQALEDANRDIQQNIKILQPNDNE"
     gene            9872..11140
                     /locus_tag="PTC08_000913"
     CDS             9872..11140
                     /locus_tag="PTC08_000913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HDK5682430.1"
                     /translation="MNQRNAKLAAMLSIIPGLGQCYNRQFVKGICCTIFFISFISVFY
                     QFFNIGFWGLFTLGTVPKLDDSRVLLAQGIISVLLIAFALTLYIVNIIDAYRTAERFN
                     RGEEIKDPKARRIAAWDKTFPYLLISPGMFLLVFIVVFPLLFMGAVAFTNYNLYNAPP
                     RHTLEWVGFDNFKTLFTIDIWRHTFFSVITWTIVWTLVATTLQIALGLFLAIIVNHPL
                     VKFKRFIRTVLILPWAVPAFVTILIFAALFNDEFGAINNTILQPLLGVAPAWLNDPFW
                     SKVALIAIQTWLGFPFVFALFTGVLQSISPDWYEAADIDGASSWQKFRHITLPHVLFA
                     TAPLLIMQYAGNFNNFNLIYLFNEGGPPVPGQNAGSTDILISWVYSLTFEFNNFNMGA
                     VVSLIIGFIVAIIAFLQFRRTSTFKDEGGI"
     gene            11142..11981
                     /locus_tag="PTC08_000914"
     CDS             11142..11981
                     /locus_tag="PTC08_000914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HDK5682431.1"
                     /translation="MNQKKKVWKAIGIYGFIAFMFVVILYPLLWTFGISLNPGTTLYG
                     AKMIPDNATFANYIYLLTDENSQYLTWYKNTLLVASANALFSVIFVTLTSYAFSRYRF
                     VGRKYGLITFLILQMFPVLMAMVAIYILLNTIGLLDSLLGLTLVYIGGSIPMNAFLVK
                     GYFDTIPKELDESAKIDGASHMRIFFQIMLPLAKPILAVVALFNFMGPFMDFILPKIL
                     LRSPEKYTLAVGLFNFINHQYANNFTVFAAGAIMIALPISIVFLFLQKYLVSGLTAGA
                     TKG"
     gene            complement(12033..12404)
                     /locus_tag="PTC08_000915"
                     /pseudo
     CDS             complement(12033..12404)
                     /locus_tag="PTC08_000915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166788.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(12549..14195)
                     /locus_tag="PTC08_000916"
     CDS             complement(12549..14195)
                     /locus_tag="PTC08_000916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000415199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-glucosidase"
                     /protein_id="HDK5682432.1"
                     /translation="MARQWWKEAVAYQVYPRSFNDSNGDGIGDLRGLIEKLDYLQELG
                     IDVIWLSPMFPSPNADNGYDISDYQAISETYGTMADFDELLEKVHARGMRLILDLVVN
                     HTSDEHPWFIESKQSCHNPKRDWYIWRDPATDGSEPNNWESIFNGSTWKYDETTNQYY
                     FHLFSEKQPDLNWENPAVRDEVFNMMNWWFDKGIDGFRVDAITHIKKSFEAGNLPVQE
                     GQQYAPAFDVAMNQPGILTWLREMKAKSLSHYDIMTVGEANGVNPDDAENWVGSDKGV
                     FNMIFQFEHLGLWDNVASRLDIKAYKHVLNRWQKQLENIGWNALFIENHDQPRRVSTW
                     GDDQQYWYTSATSHALVYFLQQGTPFIYQGQEIGMTNYPFTDIEQFDDVSVKNEYRIV
                     QEAGGDVDSLLEKLRMDSRDNSRTPMQWDANEHAGFTTGTPWFPVNPNYVDINVAQQE
                     QDPKSILNFYKELIRLKKSDDIYTYGQFDLVDADNGQLFVYTRSLDGRTVVIIGNLSE
                     EVASLNTDLKLNEGEVLLHNHEGAVDFNAMRPYEACVIEL"
     gene            complement(14242..15210)
                     /locus_tag="PTC08_000917"
     CDS             complement(14242..15210)
                     /locus_tag="PTC08_000917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate isomerase/epimerase"
                     /protein_id="HDK5682433.1"
                     /translation="MKLGVFSVLFYDRDFEQMLDDVAAAGLDMIEVGTGGNPGNKFCD
                     LDALLADENERQIFMDKIHQRGLEVSAFSCHNNPIAPDEAEAKEADETLRKTIQLAAL
                     LGVPVVNTFSGIAGSDDSAKYPNWPVTPWPTAYSEIYDYQWNQKLIPYWQDLAVFAKA
                     HDVKIAIELHAGFLVHTPYTLLKLREATNEYIGANLDPSHLWWQGIDPIAAIRILGQA
                     NAIHHFHAKDTYINQDNVNMYGLTDMQPYQQVATRAWTFRTVGYGHSPYEWGEMISQL
                     RIHGYDYVLSIEHEDPIMSVEEGFHKAVENLKSVNIYDQAPDMWWA"
     gene            complement(15226..16266)
                     /locus_tag="PTC08_000918"
     CDS             complement(15226..16266)
                     /locus_tag="PTC08_000918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HDK5682434.1"
                     /translation="MKPLKIGVIGTGGIARDRHIPLIQQHERAELIGVYDVNEALARE
                     VATQFEIAYVAPTLEALLAQVEAVIICTPNKFHADLTIAALDAGVHVLCEKPMAMTTA
                     ECDAMMAAAQRNARILTIAYHYRFTDVAQAAKQAVAQGAVGVPVVSRVQALRRRKVPG
                     WGVFTNKALQGGGCLIDYGCHVLDLVLWLLEDAQPTEILGRTYNALSRQPQQLNEWGT
                     FDYKTFDVEDHATSYVTFENGASMQFECSWAANIHHDKLDVSISGDAGGLQLFPFEMY
                     APQSDGYHILEQDVSLNEGVAASRQMDHFIRSCFGEVEPLVKPEEARRVTQLIDAIYQ
                     SDRERQSITIQG"
     gene            complement(16288..17364)
                     /locus_tag="PTC08_000919"
     CDS             complement(16288..17364)
                     /locus_tag="PTC08_000919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HDK5682435.1"
                     /translation="MGIKVGIIGCGGIANGKHLPSLAQIDDVEIVAFCDIDIEKAKAA
                     AITFGTVNAKVYQDYQELLKDQTIDVVHICTPNYLHCDMTVHALEANKHVMCEKPMAK
                     TTAEAQQMLDAAKRTGKKLTIGYQNRFRVDSQFLHQVTARGDLGDIYFGKAHAIRRRA
                     VPNWGVFLDEEAQGGGPLIDIGTHALDLTLWMMNNYEPAAVMGSTFHQLSQQENAANA
                     WGPWNPKDFTVEDSAFGFIKMKNGATIILESAWALNSLDVDEAKCSLSGTKGGADMKD
                     GLRIHGEELGTLYTKHIELDNKGVDFYEGETVDEALEEAKAWISCVQNDTPPRVKPEE
                     ALVVTQILEAIYESARTGKAVYFD"
     gene            complement(17549..18529)
                     /locus_tag="PTC08_000920"
     CDS             complement(17549..18529)
                     /locus_tag="PTC08_000920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HDK5682436.1"
                     /translation="MVSVKDVAKLANVSTATVSRVLSNTGKVKPKNQQRVLEAAKALG
                     YHPNNIGRQLRKMETMTILVVVPDITNSFFSAILRNIENIAREHGYEVILGDTQNQQG
                     DTYFSYLYEKKVDGMIVLTSYLDLENLEKVSAQYPLVLACEQIKEINVPSVSINHIEA
                     SALMTRHLIEAGHTKVGHITGPLDGILGQYRLQGFREAMDSHGLTVRDDWVIEGDFSL
                     ESGYRIGKQLLEQAEMPTALFVANDEMAIGIMKELKKHGKRVPEDMAIVGFDNIILSE
                     IVDPGLTTYAQPATEIGIRAMEKLLVLLKGEDLEERDTLLEGELLIRQST"
BASE COUNT         5557 a         4041 c         3316 g         5766 t
ORIGIN      
        1 taaaatttga agatgtctcc tctaaatttt taggtgtata tgcaatacat ttatatgagt
       61 ctagtgccat atttttctta aatgccaaat aagcaccgaa acaagctaaa acaatgccta
      121 aaactaaact gacactcaat tgagattcac ctaataatac acttgcgatt ctcccaatag
      181 ccggaaacat cggcaccatg taactactct ccgaggcgcc gatattttga attaatttca
      241 aaataaaaca gccacgcaag aaaagaagct aaaactgata aataaaggag acctatccaa
      301 aattcacgtc tgtatgaaca gtataatgtc ggccttggat taacttataa aacagtaaga
      361 atagaacagc tcccaccata ccaaacgcat ttgcaagaac cggatgcatc cctctgttac
      421 tattgaacaa cgacaagaca tcccctacaa aagtgatagt tgttccaaag gttgccatca
      481 caatgcccat aatgaactcg ctggacaaat ggttcaaatc gggagacaaa atcaccatga
      541 cgctgagaat ccctaacaaa cctccgatat aaattttagg ggcgatagac tttttaaata
      601 caatgctaat gagaactggt gtcaaaatag attccattaa aaaaatgagc gtcacaatgg
      661 ctgctgtact ataaaacgtc ccgtaataga gcaacaaata actcacagta aaattgcaaa
      721 ggccgaaacc taccactgtt aaccaattca cattgtttaa tgcaacacgt tgacgtaacc
      781 cccataacaa cacactaaac aatactaacg caattataga gcgataaagg agtgccactt
      841 ctaagctgat actttcccct tgtattttaa ccgctataaa attaagaccc caaatcagca
      901 tacaaaaaat atacataaca gcgttcatcg tcccactcct atatttcttt aatcaatttc
      961 aagaggtaac ttcgctttga taatgttcaa tttctaactt cacttaacaa tcccagtcaa
     1021 ttcatcaata aatgactgaa aagcatgttg agtgacattc aatttaaccg ctacacccga
     1081 atctgtacct gtatttgagc acagcatccc cgaatcatag tgcacgtaaa gtatgatttc
     1141 gtcgtcctca agatgaatca cagacaaata gagacctggt tctaaaaagg aaatgtcagt
     1201 catacccgtt tttaactcaa actgctgtag ctgctacata tcactctcaa atagcgctaa
     1261 atctgtggaa acattttggt tttcaaacgt gctcgttact ttgtagttga aaattttgtc
     1321 acctttttca tctgttattg catccaatca gaatcataaa aagttatgac accgtactga
     1381 aagatcgcca tttcattatt atgacgttcg gtttcagtat attgatgatg ggggaacttt
     1441 ccgcgtcttc atacattgtg atacggttga aagagatctt caatcctatc catcttgcat
     1501 atttaaacat tgatggcgtt aaaatgtttt ctatactgat gattgtaaac acggtcattg
     1561 tcatttcttg tacatatatc atttctaagt ggtccatgtc gtacaatcaa aaatatattt
     1621 tgttacttgg catggtcatg gacgtcgtcg gttatgcgaa tgtgacccat tcgaagcatc
     1681 accttcctgt ataccctaat ttattgaatc aacagtttaa agtatcacaa cctggcagcg
     1741 tttgggtggc ggatatcacg tatgtataca cgaaagaagg atggctctat ttagcaactg
     1801 tcatggattt gttttcccgt agaatcattg gctaggcgat ggcacctcgt atgactaaag
     1861 cacttgtgat atcagcttta aacaaagcgt atacaattca agaacctaga gagggattaa
     1921 tccaccactc agaccgagga agtcaatatg cctcaataga atatcaaaat ttactacgtg
     1981 aagaagggat tcagagcagt atgagtcgta tagaaaactg ttacgacaag gcatgtatag
     2041 catcttttca tagtatcatc aaaaaggaat tgatatatca tcagaactat aaaatcagga
     2101 atggagcgat gtatagcatt gtggcgtatc tccttacttt ttacaattct aaaagcgtgc
     2161 attcaacgtt aaatgatatg agccccattg aatttgagaa gaaatacgca acaaaatcac
     2221 ctagcccaac atgtactttt taattttcaa aagtacatgt tgggctaggc cagcaagcga
     2281 agcgcggtag aattctctct tttctgtgtc cggtttcttg acatagatcc aaattaaaac
     2341 ctgccatttt tatggattga atactagttt aataaaatat ggtttatatt aactacatcc
     2401 aattcatggc gtattctcta gattgcaaga atctattctg tccatctcca agatgataac
     2461 cgaatgtatc aatgtcttcc tcaaactatt cgaaaacctt ttctcatgat gaaactaaaa
     2521 tagatataaa gtactatgat taagaccgta acaacgaaat aaacgacagc ttgatgatgg
     2581 ttcaacacga cgccgaaaaa caacagtgca acagggtatg atacgtccat cagtgtctgt
     2641 ttgaatgtca tcacataccc tcgatacttt tcctcaatag cctcttgcaa gtagttcgat
     2701 gtcggtatga tcgctaatgg ttgcgataag cccatcaagc cgtttagtat gaacaataac
     2761 agcatggcga ccgctgtatt catttgaaag accaccatga cgcctaaaat caacactgtg
     2821 acacattgta ataacatggc acgttcataa gtcgacttca aattgtcttt ctcagaattc
     2881 atgcctagcc atacagagac agccaccatt ccaactgtaa agccagcaac aacgacgcca
     2941 tattgcggtg cagataactg catgaattgt actgctgcaa tcggcatacc aattgaaaag
     3001 acagcgacca aaaagtgcaa ggctaccatg ataatgaaga aatgtttcaa cgctttttgc
     3061 tgctttaaat aacgataacc ttctcgcaaa cttttcttca tctgcttatt ttcaaatttc
     3121 acttctttat ctaatggcaa atttaagaca aagaggaccg ccagagcttc tgtaataagg
     3181 ttgagtaatg ctaaagtttc gatattaaag aaagcaatca tcatgccccc tatgattgga
     3241 gctaggaaat gaatcgccgt attagttgtt aatgtcaatg atgtataccg ttcaacgtct
     3301 cctttaataa tatgattgac gttggcatcg atgaacattc ggatagtggc atcggtcata
     3361 ttgagcataa tgcctaaaat gatgatgtag ttaaagaaca tatcaaatac gatggtgaat
     3421 acaaacagaa aaatcacatt gagcaattgt atcattatga ccatcatttt attatgatag
     3481 cgacccgcaa agagacctaa caatggttcc gtcacaagtg tagaaatgac aatcgctgtt
     3541 aaataaaggg taaaaagggc tgtactgtcc gtgtgttgta atatgtaaaa tgcgcatgca
     3601 aaactaaaga tgcgcgaacc tacagatgag acgctattga ataagagcaa gctcgcagtt
     3661 ttaatactca tggtgtttct ctcctcgcta aaaccttata ctatttatcc cacagccctc
     3721 gaattttgtc aaaaatgtaa aaattaaaat ttgatttagt aaaatttatt attctatttt
     3781 ttatacgatt ggaaagtgaa tgattttaag cgcatagtaa aaagccaacg aaaatcctga
     3841 tatgcgctga ttttcattgg ctttcatatt catttcaata tactgctggc cttcacctag
     3901 tctaattcag gaaggttcgc taataattgc tctctttgac tttcatattg aggtggcaac
     3961 ataatctttt gacctaattg atcttttggt tcgtcacgat caaaacctgg aggaattgtc
     4021 gcaagttcaa aaataatgtg accacgttct ttagtgtaaa tcgctttgaa gtagttacga
     4081 tctttcactt ctgtcacgtg ataaccttgt gacattaaat atttttgcca tgcaagatgt
     4141 tgttcatcat tatctacaga ccatgcgata tggtgaactg taccaacacc ccaacgacct
     4201 tctggaagtg gctttttagg gataatgatg tgatgcttca aatctcctgc tgtttcaaag
     4261 tggaagtggt ctgcatcatg ttctagttct gttaagccta aatcatccac aagttctttt
     4321 aaagtttcta caggacgtaa tgataataat acagaaccgt ggaaacctag aattttgttt
     4381 gtgtcacttt cttcgtcgct ttcaactaat gcgagatcca aaccatgaat gtcttcaaac
     4441 tcgattgttg gacgacggaa aagttctgtt tctgtcgttt caacattatt atcgtttaaa
     4501 tgttgaaccc agtagtcttt ggagttttta gggattctga atgcaatacg ccccacttga
     4561 ccgctaccaa ctcgaccttt ataagcattc gcccatggga aaaatgtcat aaccgtacct
     4621 ggatcaacat tatcatttgc aaaatacaaa tggtacgtac ccggatcgtc aaagtttact
     4681 gtttttttaa ccaaacgtaa gttaagcact ttttcataaa aatctttgtt ttcttttgga
     4741 tgtcctacaa ttgctgagat gtgatggata tgtttaatag gttccatact ctctgcctcc
     4801 ttttattttt caaattgttc atcttgaatc agtttgtaaa attgttcctt gtcgccttgt
     4861 ccgctgaaac tcttactata aaatggtgga ttgtccgtat tcgatgcgtc actcgttaag
     4921 atggcgcgat ttaaatgcat cacttcgcca ttatgaacca gtgtaaaatc tccatacatg
     4981 aaaatttcac cgtcatcacc ataagccact cttgtttctg ggtgtgtttc ttgttgattt
     5041 gatggaagct cgtatgttaa tgcaccactc ggacatcgtt caaccacttt gatgacgtct
     5101 tccacagccg cattatctgg ttgaacccaa ggacgcttct ccacatcaaa cacttcccct
     5161 aaaccacgta tacattctgt tgcatgtaca catcgtttag gttcgaaata aacattgata
     5221 ttttcgcccg tatattgctt taccatgttc cccactccaa tctcaagact gtattcgtaa
     5281 gtttgaccat tcacagatta aagactataa tttaatcata tcagtataaa tattatactc
     5341 ataaaacaac aaaagagtaa agtaaacaac cttttataga ggaggcttaa catggaagga
     5401 caaatcattc caggtgtagg aacaaaatac agtttaacaa ctgctaataa tgatatcgtt
     5461 catgtcattt tacattacaa tggtaaacga gaaatttaca tcactgatga agacgaagat
     5521 gtactcgcga acattggatt aaatgaaact gaagcacgtg aaatcgcatt aaaattaatg
     5581 gatgtcaatc acgatacaat ggaaaagcaa gctttcgagc gcttttcatt attacgtaaa
     5641 caaatgcttg tagattggat taaagtaagt caactttcac cattaaaagg catcaatatc
     5701 gaagaagctg agcaccgcgt cccaaacgga gtcaacattg tagggattag tcgaggttct
     5761 gacattattg ctaaaccaga atcgaccgaa ttgattcacg aaggcgatat cctccttgtt
     5821 atcggataca atgaagccgt atcagaattt gaagcagttt gccgaccgga aggatagtca
     5881 taatgcattt atttgacctg tctgaactct tgctcagcgg actgctcatc tttttgctgt
     5941 tcatcagtgc tttccttgcc aatcgcatct ctgcacccga cattatcatc tttttgctaa
     6001 ttgggattgt acttgctttt tttgtaagtc attcagaaat attagaattt gctgctgaaa
     6061 ctggtatcgt tttgatgttc tttatgttag ggatggagtt tcctatcaaa caactcaaag
     6121 atcttgcatt aaatatttat aaagctggat tactagatct tttactttca tttggtgtta
     6181 cagtcatatt agtgttaatc atgggacaac ctatcgaaat tgctttactc ttaggtggcg
     6241 tagtctacgc aacaagttct tcgattaccg tcaaactact cgaaaaaaac aatcgtatga
     6301 cggccaaaga ttccaacttt atactcggac tactcgtttt tgaggatatc gtttcgcctt
     6361 tgcttgtaac gattatcgct agcttgttta taggggaagc gttatctgcc acaagtttat
     6421 cgtttgtatt tgtaaaaatt gtcttattac ttgttggtgc aatattatta ggacaagtcg
     6481 tctttaaaaa actgggcgcc tttgttgaaa aatacgtgag cgaggacttc tttatcttat
     6541 ttatggtggg cttaagttta acgtatgcag ggattgcaat acagcttggt ctctcggaag
     6601 tatttggcgc ctttttagca ggtattatgg tagcagaaac gcgtaaaatt aacctattgc
     6661 aacaaagtgt ccgaaattta cgcgatcttt taatgcctat cttctttatt aattttggat
     6721 tgtctattca actgacttca ggtatttcaa tggtcaatgt attgcttgta cttatcgtct
     6781 ggtcagtcat ttctaaaatc attgtcggat acgtgggggg taagcaattc ggccttaaca
     6841 atgtgcctgc catgcgcgct gggctttctt tcacacagcg cggagagttt tcaatgatta
     6901 tcgccggttt tgcatctaca caaattaaaa cattaagtgg ggtgttcatc cttatctctg
     6961 ctattatcgg tgtcacactc ttccaatttg cccccaaaat tgcaaaacgt ctgtttaaaa
     7021 aggagaaaaa agcatctctt ccaggtagtg tataaatttg ccatatgctt taaaagtttg
     7081 attgcctgac atgaaatatt ttaatcaaat tgccctcatt gatcacagtt caagttttca
     7141 tggttgccat tatggactga gaatcaatga gggcaatttt gtgctcaaaa gggttctaaa
     7201 aaattatttt tatagactca atccccttct tattgcatta agtttccata gtcttattac
     7261 cactgatcat actaggagta cgctctgccc tagcttttta atcatcacgg gcacgcatgc
     7321 tttcatcccc tttctttcat taaaacttca cgcggacttt tctttcatct tccctacatc
     7381 tcacctcaaa atgtaatcgt tttcaaattt gaattgacag gagcagaact ggattataaa
     7441 ctatttgtaa acgattacaa aatttaatct tcacaggggg tatagctatg cctgagttaa
     7501 aaatgtcaca tgtcaaaaag gtttacgata acaacaacgc agtcgtgaaa gatttcaatc
     7561 tagatatttc cgataaggag ttcatcgtct ttgttggacc atctggttgt ggtaaatcaa
     7621 caacattacg tatgattgca gggcttgagt ccattacagg gggagatttt tacattgatg
     7681 ggcaacgtat gaatgatgtc gaacctaaaa accgtgacat tgcgatggtg tttcaaaact
     7741 atgcacttta tccgcacatg acggtttatg aaaatatggc attcgggctc aaactgcgta
     7801 aattcgacaa agctgaaatc gacaaacgtg tcaaagaagc cgcagagatt ttagggctta
     7861 ctgattattt gaaccgtaaa ccgaaagcac tttctggcgg gcaacgtcaa cgtgtcgcat
     7921 taggtcgtgc gattgtgcgt gatgccaaag tgtttttaat ggacgagccg ttatcgaatc
     7981 tagatgccaa attacgtgtt caaatgcgca cagaaatttt aaaactacat catcgtctga
     8041 acacaacaac gatttatgtc acacatgatc agactgaagc tttaacaatg gccacacgta
     8101 tcgtcgtatt aaaagatggc cacattatgc aaatcggtac gccgcgtgaa atttatgata
     8161 cacctgacaa tatttttgtc gcacaattta tcggctcacc tgccatgaac atgattgatg
     8221 tgacagtcac tgctcaaggc attcaaatcg gtacaaaatt attcaaatta gcacacaaaa
     8281 aattcgaaaa gttaaaagaa aaaggctttg aaaaccaaac tgtcacatta gggatccgtc
     8341 ctgaagacat tcatgaagaa cctattttta ttcaggcgtc accagaaaca gctttcgaat
     8401 ctaaagtcat tgtctcagaa ttgttaggtt ctgaaattat ggtgcacaca caatttgaac
     8461 aacatgaaat cgtcgcgaaa ctcgacgcac gaacaaaagt gtcagcaggc gaaacactca
     8521 cactcgcttt tgatatgaac aaatgtcact tctttaatcc agctactgga aatcgcatcg
     8581 tataaggggg gattcgcatg aacaagatgt taaaagcagc actcttactc atcaccgtgc
     8641 ttgtcgtctt aacggcttgt ggtcctaatc gttcgcaaaa agacatagaa tccgcattaa
     8701 atcgtgataa taggaaagaa aaaccggaac aactcacaat gtgggtcgat ggtgatgcac
     8761 aaatggcctt ttacaaaaaa atcactgtgg cctatacgaa aaagacaggc atttcagttc
     8821 gtctcgttaa tgtcgcacaa aatgaccagt tagaaaattt atccttggat gcgccagctg
     8881 gtaaaggacc tgacctcttt ttcctcgcgc atgacaatac agggagtgcc tatttacaag
     8941 ggctcgctgc cgaactggac tttacagatg aacaattgaa aggctttaat aaacaagctt
     9001 tacgtgcact caattatgat aataagcaac tcgctttacc gtctatcgtt gagtcaacag
     9061 cgttactcta taacaaaaag tatgtcaaaa cggcgcctaa gacgattcaa gaagtcgaag
     9121 cgaatgcaga ccgtattaat aagcctgctg accatcaata tggcttttta tttgatggcc
     9181 gtgatccgta ttttaactat ccatttatgt ttaacagcaa taattacgta tttaagaaac
     9241 atggcgacca gtatgatgtt caccaaactg gcattaatga tccacaagtc attaaaaatg
     9301 gtaaacgact acaaaaatgg tacgagaaag gctacttacc gaaagcagcg aatcataaca
     9361 ttatgatcgg tttatttaaa gatggacaag tcggtcagtt cgtgacagga ccatggaatc
     9421 tgacagaatt tcaacaaaca ctaggtgacg acctcggtgt aacaacgttg ccttctgata
     9481 atgggatgaa gatgagacct tatctcggcg tacgtggttg gtatttatct gaatatagtc
     9541 agtctaaata ttgggcgaaa gatttgatgt tgtacttaac aagtcgagat acacttcaaa
     9601 aatatacaga tgaacgcaat gaaattacag gtcgtctcga tgtcaaatcg tcaaatccaa
     9661 acttaaaagc ttttgaagaa caggcgaaaa atgctgaacc gatgccaaat attcctgaaa
     9721 tgagacaagt atggacgcca atggcaaatg caagtacgtt catttcagaa ggtcaagatc
     9781 caaaacaagc attagaagat gcgaatcgag acattcaaca aaacatcaaa attttgcaac
     9841 cgaacgataa cgaatagaaa ggagttcccc tatgaatcaa cgaaatgcta aattagcggc
     9901 aatgctatcc atcattccag gcctcggaca atgctataat cgtcaatttg tcaaagggat
     9961 ctgttgcacc atctttttca tcagctttat ttctgtgttc tatcagtttt ttaacattgg
    10021 cttttgggga ctcttcacac tcggaactgt tcctaaatta gatgattcac gtgtgttatt
    10081 agcacaaggg attatttccg tattactgat tgcatttgca ctcacacttt acattgtgaa
    10141 tatcatcgac gcgtatcgta cagctgaacg ctttaatcgt ggtgaagaaa ttaaagatcc
    10201 gaaagcacgt cgtatcgcag cgtgggacaa aacatttcca tatttattaa tttcacccgg
    10261 gatgttttta ctcgtattta tcgttgtctt cccattatta ttcatgggtg cggtcgcatt
    10321 tacaaactat aacttataca atgcaccccc acgtcataca ttagaatggg tcggttttga
    10381 caactttaaa actttattca ctatcgacat ttggcgtcat acatttttta gcgtcatcac
    10441 ttggacgatt gtatggaccc tcgtcgcaac gacattacaa attgcattag gactgttttt
    10501 agccattatt gtgaaccacc cactcgtgaa gttcaaacgc ttcattcgta cagtattaat
    10561 tttaccgtgg gctgttccgg cattcgtcac aatcttaatc ttcgcagcat tatttaacga
    10621 tgaatttggg gcgattaaca atactatttt acaaccatta ttaggtgtcg cacccgcttg
    10681 gttgaatgat ccgttttggt caaaagtcgc attgattgct attcaaacat ggctcggctt
    10741 cccatttgtt ttcgccctgt tcacaggtgt attacaaagt atttcgccag actggtatga
    10801 agccgcagac atcgatgggg cgtccagttg gcaaaagttc cgtcacatta cgttaccgca
    10861 cgtcttattt gcgacagcgc cattactcat tatgcaatat gccggaaact ttaataactt
    10921 caacttaatt tacctcttta acgaaggggg gccgcctgta ccaggacaaa atgcagggag
    10981 tacagatatc ctaatttctt gggtttacag cttaacattc gaattcaaca actttaatat
    11041 gggtgccgtt gtatcactca ttatcggctt tatcgtcgcg attatcgcat ttttacaatt
    11101 cagacgtaca agcacattca aagacgaggg agggatttaa tatgaaccaa aagaaaaaag
    11161 tttggaaagc aatcggtatc tatggcttta tcgcgttcat gtttgtcgtc attttatacc
    11221 cattgctttg gacattcggc atctcgctca atcctggcac aacgctttat ggcgctaaga
    11281 tgattccaga caatgcgacc tttgccaatt acatctattt actgacagat gaaaatagcc
    11341 aatatttaac atggtataaa aacactttac tcgtcgcatc ggcaaatgca ttatttagcg
    11401 tgatttttgt cacactgaca tcttatgcat tttctagata ccgctttgta ggacgaaaat
    11461 acggcttaat cacgtttctc atcttacaaa tgttccctgt actcatggca atggtggcga
    11521 tttatatctt gctcaatact atcggtctac tcgattcttt actcggctta acattggtgt
    11581 atatcggtgg ttcaatcccg atgaacgcct tcctagttaa aggttatttc gacacgatac
    11641 cgaaagaact tgatgaatcg gctaaaattg acggtgcgag tcatatgcgt attttcttcc
    11701 aaattatgtt accccttgca aaaccaattt tagcagtcgt tgccttattt aatttcatgg
    11761 ggcctttcat ggacttcatc ttgccgaaga tcctcttacg tagccctgaa aaatatacat
    11821 tggcggtcgg attgtttaac tttattaatc accagtatgc caataatttc acagtctttg
    11881 cagctggagc cattatgatt gccttaccta tctcaatcgt gttcctattc ttacaaaagt
    11941 atttagtttc cggtttaacg gctggggcaa caaaaggcta aacgtttaca aaaaacaagc
    12001 agagcacgca tactctgctt gttttttcgt gactaaaggc cttttaccat tgaagcctcc
    12061 ctttctgact taatctcatc ggctaatcct tgtaattttg ggaaatacgt attagcaaaa
    12121 ccaataatca gtttattttt cacaaaaaga ctcatttctc tatcttcagg aatcgtgtaa
    12181 tctatcaaat ctaaaatctc ttgatgcttg atatgctctg aacctacttt atccacatac
    12241 ttcaatagtg ctaaaaagag ttgctcgaaa gtttcatgtt caaaatcaaa atcgagtaac
    12301 aataggctta cagaaatcgt ctctaactgt ttatctccaa gtcgatctgc tatttatctg
    12361 atggcttggt ataattatct agagctttct ttatctttta acatcatgtt cacctcatta
    12421 aatttacgac gacatataga aaattcatca tatacattta acactcatcg atcttattta
    12481 aacttgctca acgaaagtgt ataaaaaggc caggaatttc acttcccggc ctcaatcaca
    12541 ttgttatgtt aaagttcaat gacacatgct tcataagggc gcattgcgtt aaagtccact
    12601 gcaccttcat gattatggag taacacttct ccttcattta acttcaaatc tgtattcaaa
    12661 cttgcaactt cttccgataa attgccaatg attactacag tgcgaccatc caaactgcgt
    12721 gtataaacaa acaactgtcc attatcggca tcgaccaaat caaattgccc atacgtataa
    12781 atgtcatctg atttcttcaa ccgaatgagc tctttataaa agtttaaaat cgacttcgga
    12841 tcctgttctt gctgtgccac gttaatatcc acatagttcg gatttactgg aaaccatggt
    12901 gtcccagtcg taaatcctgc atgttcattc gcatcccatt gcatcggtgt tcttgagtta
    12961 tcacgactgt ccattctcaa tttctcaagt aatgaatcaa catcgccacc cgcttcttgc
    13021 acaatacgat attcattttt aacggacaca tcatcaaatt gttcaatatc agtaaacgga
    13081 tagttcgtca ttccaatttc ttggccttga taaataaacg gcgtgccttg ttgtaaaaag
    13141 tagacgagcg catgactggt cgcggaagta taccaatatt gttggtcatc tccccatgtc
    13201 gacacacggc gtggttggtc gtgattttca ataaacaatg cattccaccc aatattttct
    13261 aactgctttt gccagcgatt cagcacgtgc ttgtatgctt taatatctag acgtgatgcc
    13321 acattatccc ataacccaag atgttcaaat tggaaaatca tgttaaaaac acctttgtca
    13381 ctaccgaccc agttttcagc atcatccggg tttacaccgt ttgcttcacc gactgtcata
    13441 atgtcatagt gcgacaggga tttggccttc atttcacgta accacgttaa aatacctggt
    13501 tgattcatcg ccacgtcaaa cgcaggggca tactgttgac cttcttgtac aggaaggttg
    13561 cctgcttcaa atgatttctt aatatgcgta atggcgtcga cacgaaaacc atcaatccct
    13621 ttatcaaacc accaattcat catgttaaac acttcatcgc gaactgctgg attttcccag
    13681 ttcaaatccg gttgcttctc actaaataaa tggaaatagt attgattcgt tgtttcgtca
    13741 tatttccaag tcgagccgtt aaaaatgctt tcccagttat tcggttcaga cccatccgtt
    13801 gcgggatctc gccaaatgta ccaatcacgt tttgggttgt ggcaactttg cttagactcg
    13861 ataaaccatg gatgctcatc agacgtatga ttgactacaa gatctaaaat caatctcatc
    13921 ccacgtgcat gcactttttc aagcaattca tcaaaatctg ccatcgtccc gtatgtttca
    13981 ctaatcgctt gataatcact aatatcataa ccattatctg cattcggtga tggaaacatc
    14041 ggacttaacc aaatgacatc aataccgagt tcctgtaaat aatctaactt ttcaatgagg
    14101 cctcttaagt cacctattcc atccccattc gaatcattaa aactgcgggg atatacttgg
    14161 tatgccaccg cttccttcca ccattgtctg gctattgtat cgctcatttt gagacctcct
    14221 tcacttccca tgctgttatg cttaagccca ccacatatcg ggcgcttgat cgtagatatt
    14281 aactgatttt aaattttcta cagctttatg aaacccttct tctactgaca taatcggatc
    14341 ctcatgttcg atactgagca cataatcgta gccatgaatt cttaattggc taatcatttc
    14401 gccccattcg taaggactat gaccatagcc gactgtacgg aatgtccaag cacgtgtcgc
    14461 aacttgttga tacggttgca tatctgttaa accgtacata ttcacgttgt cttgattaat
    14521 gtacgtatct ttcgcatgaa aatgatgaat cgcattcgct tggcctaaaa tgcggatcgc
    14581 tgcgatagga tcaatgcctt gccaccataa atgactcggg tctaagtttg cgccgatata
    14641 ttcatttgtg gcttctcgta gcttcaacag tgtatatggt gtatgtacga gaaagccggc
    14701 atgcagttct attgcaattt tgacatcgtg tgctttcgca aatactgcta aatcttgcca
    14761 atatggaatg agcttttgat tccattgata atcataaatt tcagaataag ctgttggcca
    14821 aggggttacc ggccagttcg gatattttgc actgtcatca gaacctgcaa tacctgagaa
    14881 agtattcacg acagggacac cgagtaacgc cgctaattga atcgttttgc gcaacgtttc
    14941 atcggcttct tttgcttctg cttcatccgg agcaataggg ttgttatggc aactgaaagc
    15001 actaacctct agcccacgtt gatgaatttt atccataaag atttgtcgct cattttcgtc
    15061 tgctagcagt gcatcaaggt cacaaaattt atttcctgga ttgccccctg taccgacttc
    15121 aatcatatcg aggcctgctg cagcaacatc atctaacatc tgttcaaaat cacgatcata
    15181 aaataatact gaaaatacac ctaacttcat atggaacaca ccttcctatc cttgtattgt
    15241 gatactttgt cgttctctat cactttgata aatcgcatca atcaattgtg tcacacgtct
    15301 tgcctcttca ggtttgacta atggttctac ctccccaaag caactgcgaa taaaatgatc
    15361 catctgacgg gatgcggcaa caccttcatt taagctgaca tcttgttcca aaatatgata
    15421 accgtctgat tgtggtgcat acatttcaaa tgggaataat tgtaagccac ccgcatcacc
    15481 tgaaatgctc acgtctaact tgtcgtgatg aatattcgct gcccaagaac attcaaattg
    15541 catactcgca ccgttttcaa atgttacata actggtcgca tggtcttcca catcaaaagt
    15601 cttgtaatca aatgtccccc actcattcaa ttgctgcggc tgacgactta aagcattgta
    15661 tgtacggcct aaaatttctg tcggttgcgc atcttctaac agccacaata cgaggtcgag
    15721 cacatgacaa ccatagtcga ttaaacaacc gccaccttgc aatgctttat tcgtaaacac
    15781 gccccatcca ggcacttttc gacgacgtaa cgcttgcaca cgggagacta ccggcacacc
    15841 gaccgcaccc tgcgcgacgg cttgttttgc tgcttgtgcc acatccgtaa aacggtaatg
    15901 atatgcaatc gttaatatac gcgcattgcg ttgtgcagct gccatcatcg cgtcacattc
    15961 tgcagtcgtc atcgccattg gtttttcaca tagcacatgt acacctgcat cgagcgcagc
    16021 aatcgtcaaa tctgcatgaa acttgttcgg tgtacaaatg atcactgctt ctacttgtgc
    16081 taacaatgct tctaaagtcg gcgcaacgta cgcaatctca aattgtgtcg caacttctcg
    16141 tgcgagtgct tcattcacgt catatacacc tataagttct gcacgttcat gttgctgaat
    16201 gagtggaata tggcgatctc tagcaatgcc gccagttcct attacaccta tttttaatgg
    16261 tttcatcgtg atgtctcctt cgttgtctta atcaaaataa acggcttttc cagtacgggc
    16321 cgactcataa atcgcttcta atatttgtgt aacgacaagc gcttcttcag gttttacacg
    16381 aggcggtgta tcattttgaa cacagcttat ccatgccttt gcttcttcca acgcttcatc
    16441 cactgtctcg ccttcataaa aatcgacacc tttattgtcc agttcgatgt gtttcgtata
    16501 caatgtaccc aactcttcgc cgtgaatacg taagccatct ttcatatccg cgccgccctt
    16561 tgttcctgat aacgaacatt tcgcttcatc tacgtctaaa gagttaagtg cccacgcgga
    16621 ctctaaaata attgtggcac catttttcat tttaataaat ccgaatgctg aatcttctac
    16681 agtaaagtct ttcggattcc acggtcccca agcattggcg gcattttctt gctgactcaa
    16741 ttgatggaat gtagacccca tgacagcagc cggttcataa ttgttcatca tccaaagtgt
    16801 gagatctaac gcatgtgtcc caatgtcaat taacgggcct ccaccttgtg cttcttcatc
    16861 taaaaagacg ccccagttcg gcacggcacg acgtcgaatg gcatgcgctt taccaaaata
    16921 aatatctcct aaatctccac gcgcagttac ttgatgcaaa aattgactgt caacacgaaa
    16981 tcgattttgg taaccaatcg tcagtttttt acctgtccgt tttgccgcat ctaacatttg
    17041 ttgcgcctcg gcagtggttt tggccattgg tttttcacac atgacatgct tatttgcttc
    17101 aagtgcatga accgtcatgt cacaatgaag atagttcggt gtacaaatat gtacgacatc
    17161 aatcgtttga tcttttaata attcttgata atcttgatac acttttgcat taaccgttcc
    17221 gaacgttatg gctgctgcct ttgctttttc gatgtcaata tcacaaaatg ccactatttc
    17281 tacgtcatcg atttgtgcta aactcggtaa atgtttacca ttcgcgatac ccccacaacc
    17341 aatgatgcct actttaatcc ccatacaaca cactccaatc tttgatgata tttccgtctc
    17401 tttcagttcg atcgtgtttc tatattttgt aatcgattac attttaaaat ataacaaaaa
    17461 tgcatcctat tgtaaacgga ttcacacagg atgcatcaac ttattttact atcatcaacg
    17521 cgcattaatc agatacattt gaactgtttt aagtcgattg acgtattaac aactcacctt
    17581 ccagtaaagt atcgcgttct tccaaatctt ccccttttaa tagcactaac aatttttcca
    17641 tcgcacgtat cccaatttca gttgcaggtt gcgcgtaagt cgtcaaacct gggtcgacaa
    17701 tttctgacaa aataatatta tcaaatccta cgatcgccat atcttcaggg acgcgtttcc
    17761 catgcttttt caactctttc ataatgccaa tcgccatttc atcattggcg acaaataacg
    17821 cagtcggcat ttcagcttgt tcaagtaatt gcttgccaat gcgataaccc gactctaaag
    17881 aaaagtcccc ttctatcacc caatcatcac gtaccgttaa accatggctg tccattgctt
    17941 cacgaaagcc ttgcaagcgg tattgaccta aaataccatc caatgggcct gtaatatgtc
    18001 ccactttcgt atgtccagct tctattaaat ggcgtgtcat caatgcagat gcttcaatat
    18061 gattaattga aacagaaggc acattaattt ctttaatttg ttcacaagcg agcacaaggg
    18121 ggtattgcgc actgactttt tctaaatttt caagatcaag ataggacgtg agcacgatca
    18181 tgccatcgac tttcttttca tacaaataag aaaaatatgt atcaccttgt tgattttgcg
    18241 tatctccgag aatcacttca tagccgtgtt ctcgtgcaat attttcaatg tttctgagta
    18301 tcgctgagaa aaatgaattg gtaatatccg gtacaacgac aagaatcgtc atcgtctcca
    18361 ttttacgcag ttgtctcccg atattattcg gatggtagcc aagtgctttg gcggcttcta
    18421 acacgcgttg ttgatttttc ggcttgacct tccccgtatt gctgagcacc cgtgaaaccg
    18481 ttgctgtcga tacatttgct aactttgcga catcctttac acttaccata gtccttcccc
    18541 ttttatgtct tcgtaataaa ttaaatataa cacaaaaaat acaccatcgc ttgtttcttc
    18601 taatccctgt ataactatta tcccatttta aaaatatgcg atgacttaaa cccttctcac
    18661 actttaactg gtatgccctc
//
LOCUS       DANHOL010000037        18379 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.037, whole genome shotgun sequence.
ACCESSION   DANHOL010000037 DANHOL010000000
VERSION     DANHOL010000037.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 18379)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18379)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18379
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.037"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            243..1187
                     /locus_tag="PTC08_000921"
     CDS             243..1187
                     /locus_tag="PTC08_000921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation transporter"
                     /protein_id="HDK5682437.1"
                     /translation="MARRTYFHHVEHRKTQAHSKTTLWLSLIITLFFTVVEFVGGLVS
                     NSLALLSDSFHMLSDVIALGLSMVAVYFASRRPTARYTFGFLRFEILAAFLNGLALAV
                     ISVWIFYEAIMRVIFPQTVESGLMLVIATIGLIVNIILTIILMRSLKSENNINIQSAL
                     WHFIGDLLNSVGVIVAVALIYLTGIQLIDPILSMVIALVILRGGYKIMRNAWLILMES
                     VPEHLETDEIMETMKSVDQVLDVHEFHLWSITTDHYSLSAHVVLDSRNSEDAYRTINR
                     LERLLKEKYGLAHTTLQIEHLDINHLNESYFEEVKHDE"
     gene            complement(1356..2255)
                     /gene="yut"
                     /locus_tag="PTC08_000922"
     CDS             complement(1356..2255)
                     /gene="yut"
                     /locus_tag="PTC08_000922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="urea transporter"
                     /protein_id="HDK5682438.1"
                     /translation="MSKSIHTFFKNISQVVLLENTWTGLLILIALWIGNWKIGLAAMI
                     GSTISLITARHFNYTDEEIHSGLAGFNPVLIAIDLTLFLLWSWQSILVILISIVLAMP
                     IAQAIKNFLKPFHLPELTTPFVVITWVVLLMSQQFKFVKTNVDVLPLTADVHINLNTT
                     FHPIHAFFSDVSQIFLVEHTISGILIVIACFIASRRAGIYLLIANFLGLLLEFFFGAD
                     IGTLNEGLFGFNLMLSIIAIGVTFRSANHLKAVIAFVLTVVMTPMMYAATATFLEPIG
                     IPSLTFPFIITTWTLLLAGQSTT"
     gene            2503..2805
                     /locus_tag="PTC08_000923"
     CDS             2503..2805
                     /locus_tag="PTC08_000923"
                     /EC_number="3.5.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001832402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="urease subunit gamma"
                     /protein_id="HDK5682439.1"
                     /translation="MHFTQREQDKLMIVVAADLARRRKARGLKLNHPEAVALISYEIL
                     EGARDGKTVAELMSYGREILSKDDVMEGVEAMVTDIEIEATFPDGTKLITIHHPIV"
     gene            2818..3174
                     /locus_tag="PTC08_000924"
     CDS             2818..3174
                     /locus_tag="PTC08_000924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="urease subunit beta"
                     /protein_id="HDK5682440.1"
                     /translation="MKPGEIIVNSTEIMINEGRENTKLKVKNTGDRPVQVGSHYHFFE
                     ANPALSFEREEAYGKHLDIPAGAAVRFEPGDEKEIRLVRYAGKQHVYGFHGLVDGPLD
                     QSRITAPNMTEGSEVK"
     gene            3171..4886
                     /gene="ureC"
                     /locus_tag="PTC08_000925"
     CDS             3171..4886
                     /gene="ureC"
                     /locus_tag="PTC08_000925"
                     /EC_number="3.5.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002447295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="urease subunit alpha"
                     /protein_id="HDK5682441.1"
                     /translation="MSFKMTESQYTSLYGPTVGDSIRLADTDLFAKVEKDYARYGDEV
                     TFGGGKSIRDGMGQNPNATRDNKAVADLVISNAVVIDHDKVIKCDIGVKNGYIMKLGK
                     AGNPDIMDGVDIIIGSSTDVIAAEGMIVTAGGIDTHVHFINPEQAEVALESGITTHIG
                     GGTGASEGSKATTVTPGSWYIHRMLQAAENLPLNIGFTGKGQAVNPTALVEQIHAGVI
                     GLKVHEDWGATPSALRHALEVADDYDIQIALHADTLNEAGFMEDTMKAIGDKVIHMYH
                     TEGAGGGHAPDLIKSAGYPNVLPSSTNPTLPYTHNTIDEHLDMVMITHHLNASIPEDV
                     AFADSRIRKETIAAEDVLQDMGVFSMISSDSQAMGRVGEVITRAWQVAHRMKQQRGPL
                     EGDSEYDDNNRIRRYIAKYTINPAITHGISEYVGSVDAGKLADLVIWDPRFFGVKPDM
                     VVKGGMINVAANGDANGSIPTSEPIKYRHMYGQYGGNLQSTAITFVSQAAYMNGIRRT
                     LDLKRDVRPVRNIRQLTKKDMKNNSALPKLDVDPETYEVFVDGEKVTSEAATELPMTQ
                     RYFLF"
     gene            5226..5771
                     /gene="dcd"
                     /locus_tag="PTC08_000926"
     CDS             5226..5771
                     /gene="dcd"
                     /locus_tag="PTC08_000926"
                     /EC_number="3.5.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dCTP deaminase"
                     /protein_id="HDK5682442.1"
                     /translation="MILSDSDIKAYLERQLLNIEPLVEAHIEPASVDLTLGSHFLKPI
                     PPETGVQRMSDPIAYETIEQPRVVIPAHAFILATTEEYITLPQQLTGFIEGRSSVGRA
                     GLFIQNAGWVDPGFEGKITLELYNANDFPLEIEQGQRICQIVLAETKTVPETKYQGKY
                     QGQHTTTGSRLFRDWMKDGGD"
     gene            5772..6674
                     /locus_tag="PTC08_000927"
     CDS             5772..6674
                     /locus_tag="PTC08_000927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HDK5682443.1"
                     /translation="MDIVILAGFLGGGKTSTLNFLIQDAIDQELKPAVMMNDFGAKNV
                     DAQLVTEDVKMEVLTNGCICCDLKANVSQQLHELYLTHQPDIVFIECSGAAHPVEVFD
                     ACMTPVLAPFIQDLSVLGIVDAAAYESRDTLPETIQTLMDEQIRYCSHLIINKIDLLE
                     SDQLLAVVQTIQQRYPDIPYILTRYGEITLQEIQHASKYDMSERSSVHHHGHLSHMLY
                     EFQSPIQQSALIEGLKGLKDVFRVKGFVYFKGCETPYVVQYTPGHLELKQCPIEMSPY
                     LVVVGHDLNDVEITETLDIIEFSS"
     gene            6975..7397
                     /locus_tag="PTC08_000928"
     CDS             6975..7397
                     /locus_tag="PTC08_000928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HDK5682444.1"
                     /translation="MFSNILVPYDFGNSFKNVPEQLKKLTGNDAPYEIVVFNVISETE
                     LANYVRYQGKHFEEVVEEKKKEMKPFLKTIEDVGLSYKVKFATGSPTKEIVNEVGNEH
                     YDIVVMSNKRSEMDIKHVLGHVTHKIAKRVNIPVLIVK"
     gene            7599..7859
                     /locus_tag="PTC08_000929"
     CDS             7599..7859
                     /locus_tag="PTC08_000929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin"
                     /protein_id="HDK5682445.1"
                     /translation="MSYYAYVDRDMCIACSACGAAAPRLFRYDAQGIAYMCLDCNSGT
                     AQIPECDLGNLDDAVENCPTSAITVGQQPFSLPIILDREKEL"
     gene            7859..9544
                     /locus_tag="PTC08_000930"
     CDS             7859..9544
                     /locus_tag="PTC08_000930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682446.1"
                     /translation="MKQKGFEQLLEETHAKVTQLEQPLAVIDTMLTLDGKIPLEIARQ
                     SLNFEQWAIYQHLAHGTCLFTDEKPSDSEQVISFGMSAYGRLHLGPSFNDDYTQIWGY
                     VTLTTEAMTEIQQLTTRLHTEEMLRYQSEVVPFFRRLEPQEVIEVIDAIKEKVDFMAP
                     VLLYYNSHTYTTFYHYNNLLKSLEGDTTHFLLDELAEKNKDTWTKDERIFIFNLYTLL
                     QSGPPARGEEVNGVHFSLHYLSHYLEEKLAVYQEMTDTPSKPVPKSLLAKSRLICQLR
                     EKVAENYVIYRKINGLNLHKQEQFLNQQEVGLYRDEAMENELAQILGMASEQTYYDAF
                     LNDIAQHPDMTTIQTLLEKMVGYAIRATHSDVGMTRGFRYPWMYYDALKHHQLETIFE
                     WKQQMYFCCAIPSEAMKQAFRNQSQILVGILTAISKRMEYNSWHYTPGNFLYERHRIQ
                     RHYYFPPVMSDITEWSNQHHKGHVFANVKHAIRCPGAIQCPPYTLNAYYDLRLMKTSG
                     IVYSEIDLMKALYYRRVVGALYQAWFDYCREHQSQLDMAAYDRKWYQQQFIEV"
     gene            9563..10810
                     /locus_tag="PTC08_000931"
     CDS             9563..10810
                     /locus_tag="PTC08_000931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-grasp domain-containing protein"
                     /protein_id="HDK5682447.1"
                     /translation="MKTLLFINLRSHKVERIAPVIEAKRQGYRVVLMTDHDPQLIDSG
                     LDEVIEIDTYDETAVVEAVIAYHQQHHLSGILTWSDKDVELVAQLNDRLQLPGIPVSH
                     VKNARNKYLMRMAFDQVPDISPDYENVRSEVDLRHAVARIGTPGILKPVGASGSKGIF
                     KIESEECIEYVYETLRHATSPERDKVYHYYPNDYIYEGYLVGEEVSVEGVVQNGEVRI
                     AGITDKAVTPEYSLEYIAIFPSDKNAALQQEIKTKATQAIQSLGIDHCAFHLEGRVTK
                     DGFKVIESAARPGGGFIASHLIPGASGHSYIEKILDVAVGNDVTENWPTFDQTSKKMC
                     FYSVMAEQAGIFKGVQGLDRLVEIPGVHYVVSLKNYGDSVILPPEHFSSCFVLNIVFE
                     AESTEAVQQKIDWIHEVIEVIVE"
     gene            10807..12039
                     /locus_tag="PTC08_000932"
     CDS             10807..12039
                     /locus_tag="PTC08_000932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-grasp domain-containing protein"
                     /protein_id="HDK5682448.1"
                     /translation="MTILMLSSTDHAKTPYNEWFPDTAEQMILFCPVEKKNSYADEDY
                     LRIEAFEHYMVNPDIEMRALELSQQYDISHVLSISEFDVIRAAKIRVLLKIEGQSLIS
                     AEAYRDKVLMKQLLQSTSVKTPHFDKAIDSANIQRFVGKYGYPVVLKPIDGSGSSDVV
                     IARAQQDIDTFLQAHPDIGRYEIEQFIDGEMYHVDGLVHNAEVKCAYVSHYYNGCLAF
                     KDHQPLASYMLKADNPLSQALQQQVEQVVAALPTLPSGSFHAEFFVTPTNDIYFCEIA
                     SRTGGGEIGRTLEHAIGMQLNQMSLYLQTGRAEEVEAHIQIQRYGGFILLPPQNATFQ
                     GIQHPLEEDWVLFQSLKATPGQPFGAAQLSVDHIMSVVVEGEDEATLIARIDQVITWY
                     QQEVQWKSLQATTYNDNV"
     gene            complement(12396..13625)
                     /locus_tag="PTC08_000933"
     CDS             complement(12396..13625)
                     /locus_tag="PTC08_000933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDK5682449.1"
                     /translation="MTLPKNVKLRLLMLFIQNASVNAVFPFMALLLTHYLGGKKAGMM
                     LIIGILLKFSGSIIGGYLSDHLPLKKNVIACLTLMSAFLFLGMGAVLAQLEGVQSFQL
                     LFVVFLACYLLNELLTALAKPMYNALALDSIDETHRQRYARFKYWISNTSTALGMLMG
                     GLFYGSFKVSLFVLIYICLTVNVLILYFGVQETRRTISHPSARRFVAIFQRYQVAYRN
                     RPFVLLLISSMLILSAEMSLSSYVAVRLEHQFKTIQLYDFPIDGVRMFSILLLINTIT
                     IISLSFAILHYFKRFKVATILNIGFLFFAGGYTVVMSNNHALVLVIFMLMATIGEILF
                     TPTVEAEKIRFIPADTRGAHSALDSWVPIGAELISRLFLIIGTVLTPLMMSGLVLATV
                     ITGFLLLLSTVKRYEAV"
     gene            13783..14712
                     /locus_tag="PTC08_000934"
     CDS             13783..14712
                     /locus_tag="PTC08_000934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDK5682450.1"
                     /translation="MDIKQMKYFIEIVRQGGMTRAAETLYIAQPTISKAIKELESEIG
                     EPLFDRTRRQLLLTDVGEVFYHKAVEILKLYESLPNEISSLLGLEKGYISIGISALMD
                     MERLVQVLGQFHQQYPNVVFNLDENGGKTIENQVRNNDIHLGLTSLPVDSKLFDSFPL
                     YKGEFQVVMHHTHPLAQKENVTFKDLKDEDFIMFNEDFYINDKIIALTRQAGFVPHIV
                     SKISQWQFIEHLITAKMGISILPDNIVRIISRNPEIRVLSIDDSTVDWTMGVIWRKDV
                     YLNHATQTFLDYLNIQLPLTTVHENHSIDKSND"
     gene            14790..15182
                     /locus_tag="PTC08_000935"
     CDS             14790..15182
                     /locus_tag="PTC08_000935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019164941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CidA/LrgA family protein"
                     /protein_id="HDK5682451.1"
                     /translation="MAKVKQLLKTVTQLCIIYGITMLGNQIQQFFNIPLAGSIIGLLL
                     FFILLQFKIVKVEWIKEGANFLLATMVFFFVPSVIGLMDVVSELNLNFIIFFTLVAVG
                     TVLVAYSSGLVAEKMVTGRIFRKGQNPS"
     gene            15179..15865
                     /locus_tag="PTC08_000936"
     CDS             15179..15865
                     /locus_tag="PTC08_000936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LrgB family protein"
                     /protein_id="HDK5682452.1"
                     /translation="MMILQGIAMIVLTVVMFILSKKIYHKFNSPILNPALVTSLGVIA
                     ILLLFNIDYHSYMVGGQWINQLLSSTVVCLAFPLYLNRHKIVKYFKTIFVSVFTAVIL
                     NFSLIYFSLKLLGYGREDIVTLLPRSITAAVGIQVSHQLGGEDTVTILFIIATGLLGS
                     MIGASLVRMTNFQSSIARGMTFGNASHAFGTARAFEMDLESGAFSSIGMILSAVMSSV
                     MLPILLMLFY"
     gene            16440..16616
                     /locus_tag="PTC08_000937"
     CDS             16440..16616
                     /locus_tag="PTC08_000937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682453.1"
                     /translation="MYIIVIILAVLTVIAWITAIRAFRQTGQKGKINPNTWVIIGAVL
                     TTLTIMMMFIFSQN"
     gene            16879..17703
                     /locus_tag="PTC08_000938"
     CDS             16879..17703
                     /locus_tag="PTC08_000938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682454.1"
                     /translation="MLVAEGHDVFIQTPPTMRQTTVAQTREIDLFDLSNVVSALEDIA
                     LVVVIGNPLFSNTRLTQSQPIQLQRLMYDNLGYAMKQANIQQCIVWQSQLQPVLKQMM
                     EAFQIEVIHHALKTTKWFPNRRVLYQWSEERQTVRSIQALDIPQSVSMEAVTAMYGRF
                     LKTLNGRLVNGIYDGQQFTIVLMPFKIPLIQMRHHSSSDLTQRVILNITGGWLAQQSG
                     HTARMEFRRLEGDTTTCLIALHDFVPRLPWGVYRLTQAPMHRFVSYLFRQYWHQFK"
     gene            complement(17923..18372)
                     /locus_tag="PTC08_000939"
     CDS             complement(17923..18372)
                     /locus_tag="PTC08_000939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019164946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HDK5682455.1"
                     /translation="MTKHPKALHDELCFLFYVASKEVIKKYTACLKEYELTYTGYITL
                     ISIGDDEVVNIKRLGDRIYLNSGTLTPLTKKLVAQGLIKKVRKPEDERNLNISLTDKG
                     RKLKQQLAHLNEEVHASLSMEGTDMTELVGILQRFLENNFPSHPVTV"
BASE COUNT         5797 a         3131 c         4025 g         5426 t
ORIGIN      
        1 gagataaagt atgtttataa gcaataagtg atagggtatg ataaaataaa aatcaacatg
       61 gaggcttggc tgtggcagtc cgcccgtgtt taactgatcg acaatatcaa gtagacgaaa
      121 gtttagtgaa tgacgatttt ataacatata gcaagtagaa ctcatgaggt gaatgcggca
      181 gtggtcgtat tcacctcgcg tcgtttataa gaactgagaa atattatcaa aggagtactt
      241 ttatggctag aagaacatat tttcatcatg ttgagcatcg caaaacacag gcacactcga
      301 aaacgacatt atggctttct ctcatcatta cacttttttt tacagttgta gagtttgtag
      361 ggggactcgt ttctaactca cttgcactgt tatcagattc atttcatatg ttgagtgacg
      421 tcattgcgtt aggtttatcg atggtcgcgg tttattttgc gagccgccgc ccaaccgcac
      481 gttatacatt tggattttta aggtttgaaa ttctcgcagc gtttttaaat ggactagcac
      541 tcgcagtgat ttctgtatgg attttttatg aagccattat gcgtgttatt tttccgcaaa
      601 ccgtcgaaag tggtttaatg cttgtcattg caacgattgg tttgattgtg aatattattt
      661 taaccatcat tttaatgcgc tcattgaaga gtgaaaataa tattaatatt caaagtgcat
      721 tgtggcattt cattggggac ttattgaatt ctgttggtgt tatcgtcgcg gtcgctttga
      781 tttatttaac ggggattcag ttgattgacc caattttaag tatggtcatt gccctagtca
      841 ttttgcgcgg tggttataaa attatgcgca atgcatggtt aattttaatg gaatctgtac
      901 ctgaacattt ggagactgat gagattatgg agacgatgaa atcagtagac caagtgttgg
      961 acgtccatga gtttcattta tggtcaatta cgacggatca ttattcgctt agtgcgcatg
     1021 ttgtgttgga tagcagaaat agtgaagacg cgtaccgtac gattaatcga ttggaacggt
     1081 tgttgaaaga aaagtatggg ttggcacata caacactaca gattgagcat ttggatatta
     1141 atcatttgaa tgagtcgtat tttgaagaag tgaagcatga tgaatgatgt tagatagcac
     1201 gcactggact tcatcacttg tgtgttactt ttaagagggg aggtttcaca agcaaacgta
     1261 gaataagttg aatatgctca aaaaagtgca cgcatcgcgc gtattaaggc gatgcgtgca
     1321 cttttttgat gttttgttta tttggaaata tctggctagg ttgttgattg cccagctaaa
     1381 agtaaagtcc atgttgtgat aataaatgga aatgtcagtg atgggatgcc aatcggttct
     1441 aaaaatgttg cggttgctgc atacatcata ggcgtcatga ctaccgttaa aacaaaagct
     1501 atcactgctt tgagatggtt ggcagaccgg aatgtcacac caattgcgat gatagatagc
     1561 atcaagttaa agccgaagag accttcattc aatgtgccaa tatctgcgcc aaagaaaaat
     1621 tccaataata aacctaagaa gttggcaatt aaaagataaa tacccgcgcg tcttgaagca
     1681 ataaaacaag cgataacaat gagtataccg ctgattgtat gttcgactaa aaagatttga
     1741 ctcacgtcgc taaaaaaggc gtgtatcgga tgaaaagttg tatttaaatt gatatgcaca
     1801 tctgcagtta acggtaagac atcgacgttc gttttaacaa atttaaactg ttgtgacatc
     1861 aagagaacaa cccatgtgat gacgacaaaa ggtgtagtga gttcgggtag atggaaaggt
     1921 tttagaaagt ttttaatggc ttgtgcaata ggcatcgcta atacaatact gattaaaatg
     1981 acgagtatac tttgccaaga ccagagtaga aataaagtta agtcaatcgc aatcagtaca
     2041 ggattgaagc ctgcgagtcc ggaatgaatc tcttcgtcag tataattgaa atgacgtgcg
     2101 gttatgaggc tgatggtact tccaatcatc gcggcaagtc cgattttcca gttgccaatc
     2161 caaagtgcga ttaaaatgag taaacctgtc cacgtatttt cgagtaggac gacttgagaa
     2221 atgtttttga aaaaagtatg tatcgatttt gacattaaag ttcacttctt tctctattac
     2281 taaaacaaaa tacatgttca cattttaaca tttgcatatt tcaattaaca actatattgt
     2341 aataatgtta ataagagtat agcgcttttg aatttgaatc acacatttct ttgggaagcg
     2401 cttttattat tatcgtatag tattatgatt tgaaagtacg gatagggagg actataatta
     2461 aggtctaaga caacttaatt atgagaataa ggagtgaatg ggatgcactt tacacaacga
     2521 gaacaagaca aactgatgat tgttgttgct gcggacttag cccgacgacg taaagcgcgt
     2581 ggcttgaaat taaatcatcc tgaagcagtc gcattaatta gttatgaaat attagaaggt
     2641 gcgcgtgatg gtaaaacagt tgctgagtta atgagttacg ggcgtgaaat tttatcaaaa
     2701 gatgatgtca tggaaggtgt cgaagcgatg gtgacagata tcgaaatcga agccactttc
     2761 ccagatggta caaaactaat tacgattcat catccaattg tgtaggaggg gataatgatg
     2821 aaacctggag aaattattgt gaattcaacc gaaattatga ttaatgaagg acgcgaaaat
     2881 acaaaattaa aggttaaaaa tacaggggat cgacctgttc aagtcggttc acattatcat
     2941 ttttttgaag cgaatcccgc gctgtcgttt gaacgtgaag aagcgtatgg aaaacattta
     3001 gacattccag cgggtgcagc tgttagattc gaacctggtg acgaaaaaga aattcgcctt
     3061 gtacgttatg ccggtaaaca acatgtgtat ggttttcacg gcttagtcga tgggccgctt
     3121 gatcaatctc gcatcacagc gcctaatatg acagagggaa gtgaagtcaa atgagtttta
     3181 aaatgacaga atcacagtat actagtttgt acggcccaac agtcggcgat tctattcgtt
     3241 tagctgacac ggatttattt gcgaaagtcg aaaaagatta cgcaagatat ggtgatgagg
     3301 ttactttcgg tggtggtaaa tcaatccgtg atggtatggg acaaaatccg aatgcaacac
     3361 gtgataacaa agccgtggca gacctagtta tttcaaatgc tgtcgtgatt gatcacgata
     3421 aagtcattaa atgtgatatc ggtgtgaaaa atggttacat catgaaatta gggaaagccg
     3481 gcaacccgga tattatggat ggtgtcgata ttattattgg ttcctcgaca gatgtgattg
     3541 cagcagaggg gatgattgtt actgcgggcg gtattgatac acatgtacac tttattaacc
     3601 ctgaacaagc tgaagttgca ttagaaagtg gcattacaac acatatcggc gggggaactg
     3661 gtgcttcaga aggctcaaaa gcgacaacgg tgacaccagg ttcttggtat attcaccgca
     3721 tgcttcaagc tgcagaaaat ttaccgctta acattggttt tacaggtaaa ggtcaagcgg
     3781 tgaacccgac tgcattagta gaacaaattc atgcaggggt catcggtttg aaagtgcacg
     3841 aagattgggg tgcgacgcct tcagcattac gtcatgcact tgaagtggca gatgactatg
     3901 atattcaaat cgcactgcac gcggatactt tgaacgaagc gggctttatg gaagatacga
     3961 tgaaagcgat tggtgataaa gtgatccata tgtaccatac agaaggggct ggtggtggac
     4021 acgcacctga cttaattaaa tcagcgggtt atccgaatgt gttaccatca tcgacgaacc
     4081 caacattgcc gtatacacat aatacgattg atgaacatct agacatggtc atgattacac
     4141 accatttaaa tgcatcgatt ccagaagacg tggctttcgc ggattctcgt attcgtaaag
     4201 aaacaattgc tgcagaagac gttttacaag atatgggtgt ctttagtatg atcagctctg
     4261 actctcaagc gatgggacgt gtcggtgaag tcattacgcg tgcatggcaa gtcgcacatc
     4321 gtatgaaaca acaacgtgga ccgcttgaag gcgacagtga atatgatgat aataaccgta
     4381 tccgtcgtta tattgcgaaa tatacgatta accctgccat tacacacggc atatccgaat
     4441 atgtcggttc tgttgatgcc ggaaaattag cggaccttgt catttgggat ccacgtttct
     4501 ttggtgtgaa gccggacatg gttgttaaag gtggcatgat taacgtggcg gcaaatggtg
     4561 atgcaaatgg ttctatccca acatctgaac cgattaagta tcgtcacatg tacggtcaat
     4621 atggtggtaa cttacaaagt acagccatca ctttcgtatc acaagcggct tatatgaacg
     4681 gtattcgtcg tacattagac ttaaaacgtg acgtgagacc tgtacgtaac attcgccaat
     4741 taactaaaaa agatatgaaa aataatagtg ctttaccgaa acttgacgtt gatccagaaa
     4801 catatgaagt tttcgtggat ggggaaaaag taacgagtga agcggcaaca gaattaccga
     4861 tgacccaacg ttatttctta ttctaaagtg gctttgacat aatattaacg ccattagcta
     4921 tgtaaataga aatgaagctt gttcgaatgt atcgtcatga cactcgagca ggctttttcg
     4981 tattgtttca tcgtgcgttt atgaaatatg cgcaacgggt atgaacatct catctggttg
     5041 cgttgtcaaa agatttttac gattatataa cattgcttat ttattgtatt ttgataacat
     5101 tactcgaaaa taaaatgaaa aatattcaaa aaaatcttgt ccgaatcttc tggacatgat
     5161 aaattatgaa aacatcacgc tacgtaaaaa tgatgattta tatttaagaa actgaggtgc
     5221 atcgtatgat tttgtcagat agtgatatta aggcgtatct cgaacgtcaa ttattgaata
     5281 ttgaaccatt agtagaagca catattgagc cagcatctgt tgatttaaca ttaggatcgc
     5341 actttttaaa accgatacca cccgaaacag gggtgcaacg gatgagtgat ccgattgcgt
     5401 atgagacgat tgaacaacct cgagtggtga tacctgcgca cgcttttatt ttagctacga
     5461 cagaagaata tatcacgtta ccccaacaat taactgggtt tattgaaggg cggagttcag
     5521 tcggtcgagc aggacttttc atacaaaatg caggttgggt cgatccaggt tttgaaggta
     5581 aaattacatt ggaactttac aatgccaacg actttccgtt agaaattgaa caaggccaac
     5641 gtatttgcca aatcgtatta gctgaaacaa aaacggtacc agaaacaaaa tatcaaggga
     5701 aatatcaagg ccaacatacc acaacgggaa gccggttatt tcgtgattgg atgaaagatg
     5761 gaggagatta gatggatatc gtcatattag cgggcttctt aggtggcggt aaaacgtcta
     5821 cactgaactt tttaatacaa gatgcgattg atcaagagtt aaaaccagct gtgatgatga
     5881 atgactttgg ggctaaaaat gtcgatgcac agctcgtgac tgaagatgtg aaaatggaag
     5941 tgttgacgaa tggttgtatt tgctgtgatt tgaaagcgaa tgtctcacaa caactccacg
     6001 aattgtattt aacgcatcaa cctgacattg tctttatcga atgcagtggt gccgcacatc
     6061 cagttgaagt gtttgatgca tgcatgacgc ctgttcttgc gccattcatt caagatttga
     6121 gtgtgttagg tattgtcgat gcggcagcct atgaaagtcg agatacttta ccagaaacga
     6181 ttcaaacgtt aatggatgaa caaattcgtt actgtagtca tttgattatt aataaaattg
     6241 atttgctaga aagtgaccag ttgttagccg ttgtccaaac tatacaacaa cgctatcctg
     6301 atataccgta catacttaca cgttacggtg aaattacatt acaagagatt caacatgcgt
     6361 cgaaatatga tatgagtgaa cgttcatccg tccatcatca cgggcatttg tcacatatgt
     6421 tgtatgaatt tcaatcgccc atccaacaaa gtgcgttaat tgaaggatta aaagggttaa
     6481 aagatgtctt tagagttaag ggctttgtct attttaaagg ttgtgaaaca ccctatgtcg
     6541 tacaatatac gcccggacat ttagagttga aacagtgtcc aattgaaatg tcaccttatt
     6601 tggtcgtggt agggcacgat ttaaatgatg ttgagattac tgaaacacta gatattatag
     6661 aattttcatc ataaattttt tagacacttc aatttttttg agaagtgtct tttttagtgt
     6721 agaatcattt tttatgttac agaggggaca ttgtagaggg atgcactttc tagaagttga
     6781 aatgcatgtc gaagataccg agagtagcgt gtttgtgtaa aaaataattt tatgcatgtg
     6841 caccattaac aaagtagggc gccttgagaa agcgttatca taatgctaaa ataaaggtga
     6901 tgagaaagcc gtctccgata tagtcatgtc gacatgagaa taaaggagac accaaaaatg
     6961 aggagggatt agatatgttt agcaatattc tcgttccata tgattttggc aacagcttta
     7021 aaaatgtccc tgaacaatta aaaaagctaa caggcaatga tgcaccatac gaaattgtcg
     7081 tttttaatgt catttcagag acagaattag cgaattatgt tcgctatcaa ggtaaacatt
     7141 ttgaagaagt ggtagaagaa aagaaaaaag aaatgaagcc attcttgaaa acgattgaag
     7201 atgttggctt atcttacaaa gtgaaatttg cgacaggctc accgacaaaa gaaatcgtca
     7261 atgaagttgg aaatgaacat tatgatattg tcgtgatgag taataaacgt tcagaaatgg
     7321 atattaaaca tgtactcggt cacgtgacac ataaaattgc aaagcgtgtg aacatccctg
     7381 tgctcatcgt gaaataataa taaatagctt caacaaatta tattattata actttaaccc
     7441 cttcagccat tcgttgcttg aaggggtttt taggatttgt gaaatgagaa gacatgctac
     7501 attgactcaa aattactttg tggatataat ataaaaataa tagaagtgat atattatatt
     7561 gtttttgttt tgtattaaag tggtgaaggg gggagttgat gagctattat gcgtatgtag
     7621 acagagacat gtgtattgct tgttcagctt gtggtgctgc ggcgccccga ttgtttcgat
     7681 atgatgcgca agggatagcg tacatgtgct tagattgtaa tagtggcacg gcgcaaatac
     7741 ccgaatgtga cttaggaaat ttagatgatg cagttgaaaa ttgtcccacg tcagcaatca
     7801 cagtggggca gcagcctttt tcattaccca ttatattaga cagagagaag gaattgtaat
     7861 gaagcaaaaa gggtttgaac agttgttgga agaaacgcat gcaaaggtga cacagcttga
     7921 gcaaccgtta gcagtgattg acacgatgtt gacattggat ggtaagattc cacttgagat
     7981 tgcacgacaa agtttgaatt ttgaacagtg ggcgatatat caacatttgg cgcatggcac
     8041 ttgtctgttt actgatgaaa aaccgtcaga ttcagagcaa gtcatcagtt ttggaatgtc
     8101 agcctatggt cgtcttcatc taggaccaag ttttaatgat gactatacgc aaatttgggg
     8161 ttatgtcaca ttgacgacag aagcaatgac tgaaattcaa caattgacga cacgtttgca
     8221 tacggaggaa atgttgcgct atcaatcaga agttgttcca ttttttcggc gcctcgaacc
     8281 gcaagaggtt atagaagtga ttgatgcgat taaagaaaaa gtcgatttta tggcaccggt
     8341 gctcctctac tacaatagcc atacgtatac gacgttttat cattacaaca atttattgaa
     8401 aagtttagaa ggggatacga cgcacttttt attggatgag ttggctgaga aaaataagga
     8461 cacgtggacg aaagatgaac gcatttttat ttttaacctc tacacattgt tgcaatctgg
     8521 tccgcctgcc agaggagaag aggtgaatgg tgttcatttt tcactgcatt atttatccca
     8581 ctatttagaa gaaaagttag ccgtttatca agaaatgact gatacaccat ccaaacctgt
     8641 gccaaaatct cttttagcga aatcacggtt gatttgtcaa ttacgtgaaa aagttgccga
     8701 aaactatgtc atttatcgaa aaattaatgg tctcaatttg cataagcaag aacagttttt
     8761 aaatcaacaa gaagtgggac tgtatcgtga tgaagcgatg gagaatgaat tagcgcaaat
     8821 tttagggatg gcttcagaac agacgtatta tgacgcattt ttaaacgata ttgcgcaaca
     8881 tccagatatg accacaattc aaactttact cgaaaaaatg gtgggttatg cgatacgggc
     8941 gacgcattca gatgttggta tgacgcgagg gtttagatat ccatggatgt attacgatgc
     9001 attaaaacat catcagctag aaacaatttt tgaatggaaa caacaaatgt atttttgctg
     9061 tgcgataccg agtgaagcga tgaaacaagc ttttcgcaat caaagtcaga tattggtagg
     9121 tattttgaca gcaattagta aacgaatgga atacaatagt tggcattata cgccgggaaa
     9181 ttttttgtat gagcgccatc gtattcagcg acattactat tttccgccag tgatgagtga
     9241 cattaccgaa tggagcaatc agcatcataa agggcatgta tttgcaaatg taaaacatgc
     9301 cattcgttgt cctggggcga ttcaatgtcc accgtatacg ttaaacgcct attacgattt
     9361 acggttgatg aaaacatctg gcatagtgta ttctgaaata gacttaatga aagcgcttta
     9421 ttacagaagg gttgtcggtg cactttatca agcgtggttt gattattgtc gtgaacatca
     9481 gagtcaactt gatatggcag catatgatcg taaatggtat caacagcaat ttatagaggt
     9541 ttaacatagg agcgtgaagt gcgtgaaaac attactattt attaatttga gaagtcataa
     9601 agtcgagcga atcgcaccgg tcattgaggc aaaaagacaa gggtatcgtg tcgtattgat
     9661 gacagatcat gatccacaac tgattgacag tggtctagat gaagtgattg aaatcgatac
     9721 gtatgacgaa acagcagtcg ttgaagcggt aatcgcgtat catcaacagc accatttaag
     9781 cgggatattg acatggtctg ataaagatgt agagctcgtt gcacaattaa atgaccgtct
     9841 gcaattaccg ggcattccag tctcgcatgt taaaaatgct cgcaataaat atttaatgcg
     9901 tatggcgttt gaccaagtcc ctgacatttc gcccgactat gaaaatgtgc gtagtgaagt
     9961 agatttacgt catgctgttg cgcgtattgg aacgcctggg atattgaagc cggtgggcgc
    10021 ttctggaagt aaaggcattt ttaaaattga aagtgaagaa tgtattgaat atgtgtacga
    10081 aacattacgc catgcgacat caccagaacg tgacaaagtg tatcattatt atccgaatga
    10141 ttatatttat gaagggtatc ttgtcggtga agaagtatcg gttgaaggtg tcgtgcaaaa
    10201 tggagaagta cgtattgcag ggattacgga caaagcggtc acacctgaat attcactgga
    10261 gtacattgcg attttcccat ctgataaaaa tgcggcctta caacaagaaa ttaagacgaa
    10321 agcgacgcaa gctattcaaa gtttaggcat tgaccattgt gcttttcatc tagaaggtag
    10381 agtgacaaaa gacggtttta aagtgattga atcagcggcc agaccaggag ggggcttcat
    10441 tgcgtcacat ttaattccag gtgcatctgg ccattcatac attgaaaaaa tattagatgt
    10501 tgcagtcggt aacgatgtga ctgaaaattg gcctactttt gatcaaacgt caaagaaaat
    10561 gtgtttttat agcgtcatgg ccgagcaagc tgggatattt aaaggggttc aagggcttga
    10621 ccgcttagtt gaaataccag gtgtgcacta tgttgtgtct ttgaaaaatt atggagattc
    10681 ggtgatttta cctcctgaac acttttcgag ttgttttgta ctcaatatcg tttttgaagc
    10741 tgagtcgact gaagcggtgc agcaaaaaat tgattggatt catgaagtga ttgaggtgat
    10801 tgtggaatga caatactgat gttatcaagt acggaccatg ctaaaacacc gtataatgaa
    10861 tggtttccgg atacagcaga gcaaatgatt ttattttgtc cggttgagaa aaaaaacagt
    10921 tatgcagacg aagattattt gcgaattgaa gcatttgaac attatatggt aaatcccgac
    10981 attgaaatgc gtgcgctcga attaagtcaa caatatgaca ttagccacgt cctatcgatt
    11041 tcggaatttg acgtgataag agcagccaaa attagagtgt tgttgaaaat agaaggtcag
    11101 tcgttaatca gtgcagaagc gtatcgggat aaagtgctca tgaaacagtt gctacaaagc
    11161 acatcagtga aaacaccaca ttttgataaa gcgatagaca gcgcgaatat acaacgattt
    11221 gtaggaaaat atggctaccc tgtcgtactt aaaccgatag atggatcagg ttcgtcggat
    11281 gttgtgattg cacgtgcaca acaggatatt gacacgtttt tacaggcgca tcccgacatc
    11341 ggaagatatg aaattgaaca gtttattgat ggggagatgt atcatgtcga tggacttgtt
    11401 cataatgcag aagtgaagtg tgcctatgtg tcgcactatt acaatggatg tttagccttt
    11461 aaagaccatc agccactagc gagttatatg ttgaaggcag ataatccact cagtcaagcg
    11521 ctacaacagc aagtggagca agtcgttgcg gcattaccga ccttgccgag cggatcattt
    11581 catgcagaat ttttcgtgac gccgacgaac gacatctatt tttgtgaaat tgcgagtcgt
    11641 acagggggtg gtgaaatcgg tcgtacgcta gaacatgcta ttgggatgca gctcaatcaa
    11701 atgagtcttt acttacaaac aggacgtgca gaagaggtcg aggcgcacat acaaattcag
    11761 cggtatggcg ggttcatctt gttgccccct caaaatgcga catttcaagg gatacaacat
    11821 ccgttagagg aagattgggt actttttcaa tctcttaaag caacaccagg ccaaccattt
    11881 ggagcagcgc aattgagtgt ggatcatatc atgtcagttg tggtcgaagg agaagatgag
    11941 gcgacattga ttgcgcgaat tgatcaagtc atcacatggt atcagcaaga agtacagtgg
    12001 aaatcattgc aagcaacaac atacaatgat aacgtatgat atgcagacac atcagttgaa
    12061 aaagggagac cggatgaacg aacgtcagca cacggtgcca aaatcatagt aaatctcgct
    12121 cgcagtgttt ctaatgattt taatactaga aattgaatta accgcctttt tcgtttcatt
    12181 tagttcattt atttttaaag gactgtgcat tgtacatggc ttactaatag ccgtatttat
    12241 cagtcgacaa atcacacgaa aagggatgta gttgaaattt ttaatgccat tcatcctcat
    12301 tttttgacta ttttaaaatc attaatcagc gccaaatata tgtgaaagga ttgagactta
    12361 atacgctatg tctcaatcct tttaactatg cttttttaaa ctgcctcgta tcgtttgaca
    12421 gttgacagta ataatagaaa acctgttatg actgttgcta aaactaaacc tgacatcatc
    12481 agcggcgtga gtacggtacc aataattaaa aatagccgtg atatgagttc tgcaccaatt
    12541 ggcacccaac tatccaatgc ggaatgggca ccgcgtgtgt cggcagggat aaaacgtatt
    12601 ttttctgctt ccacagtcgg cgtgaacaaa atttcaccaa tcgtggccat caacataaag
    12661 ataacgagga cgagtgcgtg gttattactc atgacgaccg tatagcctcc cgcgaaaaag
    12721 aggaagccga tatttaaaat ggtcgcgact ttgaagcgtt tgaaataatg taaaatcgca
    12781 aagcttaaac taataatcgt tatcgtgttg attaataata ggattgaaaa catacggacg
    12841 ccatcaatcg ggaagtcata caactgaatc gttttgaatt gatgttctaa acgcactgca
    12901 acataggatg agagcgacat ttccgcactt aatatgagca tactactgat gagtaataag
    12961 acgaaaggac gattccgata tgctacttga taacgttgaa atattgccac aaagcgacgt
    13021 gctgatggat ggctgattgt gcgtcgtgtt tcttgtacac caaaatagag aatcaacaca
    13081 ttcacagtta aacaaatata aattaacaca aataaactca ctttgaacga gccgtaaaat
    13141 aatcccccca tcagcatacc gagcgcagtg gaagtgttcg aaatccaata tttgaagcgg
    13201 gcatagcgtt gtcggtgtgt ctcgtcaata ctatctaaag ctaaagcgtt gtacatcggc
    13261 ttggctaagg cagtcaaaag ttcattgaga agataacagg ccaagaaaac aacaaataat
    13321 aattgaaagg actgcacccc ctctaactgc gctaatacgg ctcccatacc taagaaaagg
    13381 aatgcgctca ttaacgtcaa acaagcgatg acattcttct tgagtggtaa atggtcgctc
    13441 aaataacccc cgataatcga accgctaaac tttaataaaa tcccaataat aagcatcatt
    13501 ccagcttttt taccgcctag atagtgtgta agtaataatg ccataaacgg aaaaacggca
    13561 ttcacagagg cattttggat aaacaacatg agtaaacgca acttcacatt tttaggtaat
    13621 gtcataagca tatctccatt gtataagata aaaaatatgt aaaattagta ttatattacc
    13681 cttaaaatgt aagtgtgtca aaatttgtat gagagcgcca tgcacgctac aatttataag
    13741 aagcattacg ctataataaa gagaaagaag ggaggaggac aattggatat taaacagatg
    13801 aagtatttta tagagattgt ccgtcaaggt gggatgacgc gtgcagccga gacgttatat
    13861 attgcgcaac cgacgattag taaggcgatt aaagagttag agtctgaaat cggtgagccg
    13921 ttgtttgatc gcacacgtcg ccaattgttg ctgacagatg tgggggaagt gttttaccat
    13981 aaagcggttg aaattttaaa gttatacgaa agtttgccga atgaaatcag tagtctgctg
    14041 gggttggaga aaggatatat ttcgattggc atttctgcat tgatggatat ggaacgcctc
    14101 gtccaagtgc tcggtcagtt tcatcaacag tatcccaatg tcgtatttaa tttagatgaa
    14161 aatggtggga agacgattga aaaccaagtg cggaacaatg atattcatct cgggctgaca
    14221 tcgttacctg tagatagtaa gctttttgat tcatttccat tgtacaaagg tgaatttcaa
    14281 gtcgtcatgc atcacacgca tccacttgcg caaaaggaaa atgtgacgtt caaagattta
    14341 aaagatgaag attttattat gtttaatgaa gacttttata tcaacgacaa aattatcgcg
    14401 ctcactcgac aagctggttt cgtgccacat atcgtttcta aaatctcaca gtggcaattt
    14461 atcgaacatt tgattacagc caaaatgggc atcagtattt tgccagataa cattgtgcgt
    14521 attattagtc gcaatccaga aattcgtgtg ttgtcaattg atgacagtac agttgattgg
    14581 acgatgggag tcatttggcg gaaagatgtc tatttaaacc atgcgacaca aacattttta
    14641 gactatctca acattcaatt accgttaacg acagtgcatg aaaaccattc catagataaa
    14701 agtaatgatt aacatgaaaa accaatattt ttataatggt tgattacccg ttacaataga
    14761 atcattcgaa cgaagaaagg atgattgaaa tggcaaaagt gaaacagcta ttgaaaactg
    14821 taacgcaatt atgcatcatt tatgggatta cgatgttagg taatcaaata cagcagtttt
    14881 tcaacatccc cctagctggt agtattattg ggttactttt atttttcatt ttacttcaat
    14941 ttaaaattgt taaagtagaa tggattaaag aaggtgctaa ttttctactg gcgacgatgg
    15001 tgtttttctt cgttccctct gtgatagggt taatggatgt cgtctcagaa ttaaacttaa
    15061 acttcattat attttttaca ttagttgctg ttggtacggt gctcgtggca tatagttctg
    15121 gtttagtggc agaaaaaatg gtgacaggcc gtatcttccg gaaaggacaa aatccatcat
    15181 gatgatcttg caaggcattg cgatgattgt attaacggtc gtgatgttta tattgtccaa
    15241 aaaaatatat cataagttta attcaccaat actcaacccc gctttagtga catctcttgg
    15301 cgttattgcg atattattac tttttaatat cgactatcac agttatatgg tgggagggca
    15361 atggatcaat caactattga gttccacagt cgtgtgtctc gcttttccac tgtatttaaa
    15421 ccggcataag attgtaaagt attttaaaac aatcttcgtc agtgtattca cagcggtaat
    15481 tttaaatttc tccctaattt atttttcttt aaaattactc ggctatggac gcgaagatat
    15541 tgtgacactc ctcccccgtt cgattacagc agcggtcggt attcaagtgt cacatcagct
    15601 cggtggcgag gatacagtta cgattctctt tatcatcgca acgggcttgt taggaagtat
    15661 gataggcgca tcccttgtac gtatgacgaa cttccaatct tctatcgcac gcggcatgac
    15721 atttggtaat gcttctcatg catttggaac cgcacgcgca ttcgaaatgg atttagagtc
    15781 aggtgcattt agttcgattg gtatgatatt atcagccgtc atgagttctg tgatgcttcc
    15841 aatactattg atgttgttct attaatattc aaaaccatca tggccaaccc ctatatatgc
    15901 catggtggtt tttttgaggt tgaaagattt gatattccct aaaattaacc ttaaagaatt
    15961 accaatcata gacattcttt ctttattcat attacattcc aagtattaca gtcatggcat
    16021 taaaaacaat agaaaaggta gttgtgtggt attcaagctt gatatcgtaa agataggaga
    16081 tacaaacact atagatactc tccatttcct attttttact agcactcaat catatgttgg
    16141 ctgcgtcagt aatcactcat gttattttta atgtataaac ctattttcca taacagatgg
    16201 tgtatggatc atatgggaac tgggatatta agttttccca atttctgtct tatttataga
    16261 cctttcaacc caatttataa tctcaaatgg aatacataaa aatgagagag taccgttagg
    16321 catgtatacc aaaactttta ggattcgatg tttttgtgac atccacactt tatatttttc
    16381 tgtaatcatt tttatgataa tatgaagtta ttcatgattg aacacgggag gagctagcgg
    16441 tgtatattat agtaattatt ttggcagtgc tgaccgtcat tgcttggatt acggcaattc
    16501 gtgcatttcg tcagacggga caaaagggca aaatcaatcc caatacatgg gttatcatcg
    16561 gtgcagtgtt gacaacattg acgatcatga tgatgtttat tttcagtcaa aattaaacat
    16621 gtatcgtata catgttgata atagaaatga aagacaaaag tgagaaattg catgggcagt
    16681 ttttaaactt ttgtcttttt tgatgtagca gcgggcatga atcatttgtt aaattttggt
    16741 gagaatctac tataattcag tgtatgaaag tggagaagtg gtataatact aaaaaatgaa
    16801 acagatgaga gagtgaaaga catagtgaat attttagtga ttactgatgg tcacccctat
    16861 acccataatt atgtagccat gttggttgct gaaggacatg acgtttttat ccaaacaccg
    16921 ccgacgatga gacaaacgac tgttgcacaa acacgagaga ttgacttgtt tgatttgtcg
    16981 aatgttgtct ctgcattaga agatattgca cttgttgtcg tgattggaaa cccactattt
    17041 tcaaatacga ggctcacgca aagtcagcca atacaattgc aacgattaat gtatgacaat
    17101 ttaggttatg cgatgaagca ggcgaatatt cagcaatgta tcgtttggca atcgcaattg
    17161 cagcctgtgc ttaaacaaat gatggaggct tttcaaattg aagtgattca tcatgctttg
    17221 aaaacaacga aatggtttcc gaatcgccgc gtcctttatc aatggagtga ggagcgacaa
    17281 acagtacgtt cgattcaggc gttagatatt ccacaaagtg tatcaatgga agcggtcact
    17341 gccatgtacg gtcgattttt aaaaacgttg aatgggcgac ttgtgaatgg tatttatgat
    17401 ggacaacagt ttacaattgt gctcatgcca tttaaaatac cacttatcca aatgcgtcat
    17461 cattcgagca gtgacttaac acagcgcgtg attttgaata ttacaggagg atggcttgca
    17521 caacaaagtg gacatacagc acgtatggag tttcgacgtt tagagggtga tacaacgaca
    17581 tgcttaattg cattgcatga ctttgttccg cgattacctt ggggtgtgta tcgcttgaca
    17641 caagcaccaa tgcatcgatt tgtctcttat ttattccgtc aatattggca tcaatttaag
    17701 taaaggaaag gaataacggg gcgtgttagg ctataacgac atcgggggag tagaaatgtg
    17761 atggtcatga ttctactcca gcggtccgat tgtaaatgaa gatggcgcta ttatgaataa
    17821 tagcgctaaa aggaataact gcaatgatac tggggaggta gcgatattta tatctgtagc
    17881 acattgcccc gtcgttaaca ccatggttat acagctgtaa aattaaactg ttacagggtg
    17941 cgaaggaaag ttgttttcaa gaaatcgttg taagattccg actaattctg tcatatccgt
    18001 cccttccatt gataatgacg catgtacctc ttcatttaaa tgtgcgagtt gttgcttcag
    18061 tttgcgtcct ttatcagtaa gtgaaatgtt caagttacgt tcatcttcag gctttcgtac
    18121 ttttttgatc aagccctgag ccactaattt tttagtcagt ggtgtcaaag tgccggaatt
    18181 taaatatatg cgatcaccga gtcgtttgat attgacaacc tcatcatccc caattgaaat
    18241 gagtgtaata taacctgtgt aagtgagttc atattctttt aaacaagcag tatatttttt
    18301 gataacttcc ttcgatgcaa cataaaataa aaaacataat tcgtcatgca gcgctttcgg
    18361 atgttttgtc atgttgtag
//
LOCUS       DANHOL010000038        18289 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.038, whole genome shotgun sequence.
ACCESSION   DANHOL010000038 DANHOL010000000
VERSION     DANHOL010000038.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 18289)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18289)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18289
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.038"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            <1..348
                     /locus_tag="PTC08_000940"
     CDS             <1..348
                     /locus_tag="PTC08_000940"
                     /inference="COORDINATES: protein motif:HMM:NF017416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDK5682456.1"
                     /translation="FIINKLVESIPQEAFNPYYSQRGPSSYHPKMMLKIILYSYTYSV
                     FSRRRIEYLLKNSCRMMWLAQVQTSTYRTINRFRMNPHMMEFLHILFVGLRAQLLEDK
                     LITEDVIYIDGTK"
     gene            621..911
                     /locus_tag="PTC08_000941"
     CDS             621..911
                     /locus_tag="PTC08_000941"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682457.1"
                     /translation="MRQSKKAIQDFKDRKLKYDKQMEIYGDRKSYSKTDHDTTFMRMK
                     DDHMRNGQLKPGYSLQIATNNQFVLAFGVYSHPGDTRTLEPFLKSIHCVLAP"
     gene            complement(1120..3462)
                     /locus_tag="PTC08_000942"
     CDS             complement(1120..3462)
                     /locus_tag="PTC08_000942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-nucleotidase C-terminal domain-containing
                     protein"
                     /protein_id="HDK5682458.1"
                     /translation="MKGTGLKSMMLLMVLVIAVLIFNHVSSDAAEQTSQQAAPETQVE
                     ADAETTATHTSQPDVTSQQLATTEETAQQPSESVTGLKQEGPATATVATTEDDTIESI
                     APTSAENVAQAKKDTPMMLRLSAKKAQPEATSIDRASHETAATTHTILHTNDIHGRMV
                     EEKDRVLGMAKLKTLKEQQNPDLLVDAGDAFQGLPLSNQSKGEEMAKAMNAVGYDAMT
                     AGNHEFDFGYDQLKKLEGMLNFPIVSSNVYKDGKLAFKPSVVIQKNGVRYGVIGVTTP
                     ETKTKTSPKGIVGVTFADPLTSVTREMDRLNGQVDVFIVLSHLGIDPTTKEAWRGDYL
                     THQLSQNKQYHHPIFVIDGHSHTVIEHGQKFDQDVLAQTGTALANVGKLTFKQSGQQF
                     SNAEASLLNVKNLAKLQPDAAVKAQVDKANEAFLKATSEVIIPNNTVDFQGERDDVRT
                     HETNLGNAITDAMEAYGQKGFSRPSDFAVTNSGGIRASIAKGKVTLNDVITVLPFGNT
                     IAQISVKGSDVWKAFEHSLSAPTMTTGGETQLSANGGLLQVSKSIQVYFDMNKAPGER
                     INAIRVLNKQTGQFEDLEMSRTYAVAMNDFTASGGDGFDMFGGPREEGISLEQVFANY
                     LKTADLSQYATTAPQRIINGKPAQNSEMPKITPPSSKGDNVILFPQTKRSKVVPMTKV
                     PTAEGQSQQTAMHVASEHRGMAQSMVPAVSMISTDATGKMAQAHRVMTQNVSALGHHE
                     AKNDAQQLPNTGATEQAPIVGGLFMLGAGLVIMRRQKHHA"
     gene            complement(4404..5351)
                     /gene="cobA"
                     /locus_tag="PTC08_000943"
     CDS             complement(4404..5351)
                     /gene="cobA"
                     /locus_tag="PTC08_000943"
                     /EC_number="2.1.1.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III C-methyltransferase"
                     /protein_id="HDK5682459.1"
                     /translation="MSPLTQAATKVYLVGAGPGDPCLLTKKAERCIQKADVILYDQLV
                     NPFLLQLSRPDAEWIHVGKTPYTRTTKQARINALLVEKAQAAQVVVRLKGGDPAIFGR
                     VTEEVDTLRAHQIPFEIVPGVTAASAAMSQLGRGLTERGVSTHITFTTGHFKNNEEND
                     IDLTTLANDGTLAIYMGIKRLPELMRTIQQQIGIDFPVAIIFNATRSDQHVVSGTVTT
                     IVDRIAALPERLGPGITIVGQVVRALDEAVLKPGADFDTVLIKGERQRAIEAAYEWAE
                     AGHAVLIDDRDYSDLHPTQAKTIARWVDEMALTREIALS"
     gene            complement(5339..5653)
                     /gene="nirD"
                     /locus_tag="PTC08_000944"
     CDS             complement(5339..5653)
                     /gene="nirD"
                     /locus_tag="PTC08_000944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrite reductase small subunit NirD"
                     /protein_id="HDK5682460.1"
                     /translation="MLQQKVKVAKLTDLEPLIGKKVYVGETPVALFLTEDGDIKAIHN
                     VCPHQQGPLSEGTVSEHYVFCPLHDQKIDLNTGEVQEPDEGCVATYPVEVVDGDIYIC
                     LP"
     gene            complement(5658..8063)
                     /locus_tag="PTC08_000945"
     CDS             complement(5658..8063)
                     /locus_tag="PTC08_000945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HDK5682461.1"
                     /translation="MSKTKLLMVGNGMAGVRTIEEILDRDPDRFDITIIGKEPYPNYN
                     RIMLSNILQNKMTVEETIMNPYEWYEERHIRLITGDKVVKIDREAQQVETEQGQVVDY
                     DQMIIATGSDAFILPIDGSRLEGVVGFRTIDDTEKMLEVAKTKKKAIVIGGGLLGLEC
                     ARGLVEQGMDVTVVHLAEWLMEVQLDRRAGELLKKDLEKQGLRFELQANTQEIIGDKQ
                     VEGIRLSDGRVLDADMVVMAVGIRPVTKEARAAGLDIGRGIIVDDFMQTSDPKIYAVG
                     ECAEHRSKVYGLVAPLYEQGKVLADHITGRPTEGYQGSTTFTSLKVSGCDLFSAGRIT
                     ENDDIRGIEMFNGIDNIYKKVFVQDHAIVGAVLYGDTEEGNRFYNMMKKGETIDDYTL
                     VSILHKAGEVDAMNVAEMDDDETICGCNGVSKGTIVSAIQEHDLTSVADVTRVTKAGN
                     SCGKCKGQIAELLEHTLGDDFVANAPTGICSCTDLSRDQIVTQIRAKGLKTSKEVRHV
                     LDFKNKGGCPKCRPALNYYLNMVYPTEHEDEKASRFANERYHANIQKDGTFSVIPQMR
                     GGVTDADQLIRLGEVAKQYDVPLVKVTGSQRIGLYGVNKEDLPAVWEALGMRSASAYA
                     KKTRSVKSCVGKEFCRFGTQYTTRLGIRLEATFEYIDTPHKFKMGVSGCPRSCVESGV
                     KDFGVIGVENGFQIYVGGNGGTTVEVAEHLTTVPTEDDVIKLCGAYMQYYRETANYAE
                     RTAPWLRRIGFDQVKAVVLDPEKQQALYDRIMIAKAAVEQEPWHDIVENERKQKIFEV
                     EKV"
     gene            complement(8056..8517)
                     /locus_tag="PTC08_000946"
     CDS             complement(8056..8517)
                     /locus_tag="PTC08_000946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="siroheme synthase"
                     /protein_id="HDK5682462.1"
                     /translation="MYPIQLNLTHKSVVIVGGGNIAWRKFTKLKDEAMQIKVVSPTFN
                     DAFLNETWGTHIQLIQKRYERGDLDGANLIIIATDDAVVNQQVRDDAASTQWVNHTGD
                     RTQSDFYNSLDIEHQGMKISISSEGQSIQHTKAYAAKIKAFLATLEEDNDE"
     gene            complement(8499..9239)
                     /locus_tag="PTC08_000947"
     CDS             complement(8499..9239)
                     /locus_tag="PTC08_000947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sirohydrochlorin chelatase"
                     /protein_id="HDK5682463.1"
                     /translation="MRKVIFVVHGMRKGQLNETLTQFVAQLFEAEQMDYAMAFLESET
                     ASLPTVIEDQVTQGVTELYLVPLLLFSASHYYEDIADSLEGWRQLYPQTTFYLAQPLG
                     THPKMKNWVASQIARYLDETVKDTAVVVLVHGSARFNEPDIALETIANQLSTATRPCY
                     PCMVYGKLNYEKILAELAQQWPKLLIIPYFFYDGYLVQRTKQRIGALDLPCDVTFTTA
                     INFHPVLKEVILNRLEACGGMTPCILSS"
     gene            complement(9411..9968)
                     /locus_tag="PTC08_000948"
     CDS             complement(9411..9968)
                     /locus_tag="PTC08_000948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDK5682464.1"
                     /translation="MSQVNIRMATLDDAEALHKLMHRAFTPLREVGIDWPSVNATLEM
                     IQDNIQNNAAYVLEVEGKIVSTLSIRFPWEPSQPVSKYPFVWWFATEPDYGGVGYGNQ
                     MMTYVEETILRDTLKAPAVVLGTSARKMSWLKGVYERRGYETFFSFEDETGDEGAMMV
                     KVLIPERYNKDLLAPPPWAQGESSH"
     gene            complement(10193..11017)
                     /locus_tag="PTC08_000949"
     CDS             complement(10193..11017)
                     /locus_tag="PTC08_000949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate/nitrite transporter family protein"
                     /protein_id="HDK5682465.1"
                     /translation="MGIQKPTKTVPDTYTSRETVQSIIHSVAMKEVMLDKAMPRYILK
                     SMLSGFLLTIVTVFMLAMKTQMAGALPGVVNLMGAAAFSIALVFIVLTQAELLTSNFM
                     YMTVGLYYRTVSFGKTMWLFTICFIGNILGAFVLFILMYFTKVMTPEMIAALTSTVDA
                     KTVESTWQAILVKAIFANFFINIGIYVSMQYKEGLSKTFFIAIGVIIFVFMGYEHVVY
                     NAGLFVGMIFYNFDATSWLGVLKNIVFAFIGNYIGGGIFVGLLFAYFNGSRRIEQK"
     gene            complement(11233..12765)
                     /locus_tag="PTC08_000950"
     CDS             complement(11233..12765)
                     /locus_tag="PTC08_000950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DASS family sodium-coupled anion symporter"
                     /protein_id="HDK5682466.1"
                     /translation="MATTSASKKKEGATFKPLWFILSFVALIAVLLMPTPASLPLMGK
                     AALAILAFAVILWVTEAVTYPVSATIIVGLIILLLGFSPVQNLTQALGNPQSGGAVLK
                     GDDLFGTGNALKLAFSGFSTSAVALVAAALFLATAMQVTNLHKRLALLVLSFVGNKTK
                     NIVIGAILVSIILAFFVPSATARAGAVVPILLGMIAAFGATKNSKLAALLIITAVQAV
                     SIWNIGIKTAAAQNIVAINFINDQLGHDVSWGEWFLYAAPWSIIMSIVLYFVMLKVIP
                     PEQDAIEGGTELVKQQLAELGPVKPTEWRLIIISLLLLVSWSTEKVLHPIDSSSITLI
                     ALAIMLTPKIGVMNWKEVESRIPWGTIIVFGVGISLGNVLLKTTAAQWLSDQTFGLMG
                     LKGMPIVATIALISLFNILIHLGFASATSLASALIPVFISLTSTLSLGDNAIGFVLIQ
                     QFVISFGFLLPVSSPQSMLAYGTETFTVKDFLKAGIPITIVGYILVVIMSMTYWKWLG
                     LL"
     gene            complement(12863..13870)
                     /locus_tag="PTC08_000951"
     CDS             complement(12863..13870)
                     /locus_tag="PTC08_000951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HDK5682467.1"
                     /translation="MKKLLYRWFIDGLSYMTLGLFSSLIIGLIMQTIGKQTLFPSLHL
                     EFLVEVGKVAQSLTGAAIGAAIAYGLKGKPLVIFAAVIVGMLGYETFSGGAVGAFFAV
                     LIAVELSQLYAAKTKIDIIVTPLLTLMIGGLVAKFLGPVLSQLMLEIGKVIMISTDQQ
                     PFVMGILVAVIFGLCLTAPISSAALALMLDLSGLAAGAATIGCACQMIGFAVTSYKEN
                     GVSGIISIGLGTSMLQVPNILLKPLIIVPPTLASAIIAPIMTVLFPMTNNAAGAGMGT
                     SGLVGQIMTINTMGASLNTWLLIMMFHFVLPAFVTFVIYRFMIKRQWLHVGEQKIQLN
                     Q"
     gene            complement(14567..16057)
                     /locus_tag="PTC08_000952"
     CDS             complement(14567..16057)
                     /locus_tag="PTC08_000952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HDK5682468.1"
                     /translation="MSVNVRDYIDAQYNLFINGEFVPAESGEYLDVYNPANGEKLSQV
                     AKASEKDVDKAVEAATKAFPDWSRRSKAERANMLRQVHDKIMEKKEHFAYVETLNAGK
                     AIRESSSIDIPYTAKHYQYFGSVLDTDEGTLNNMEDHIMSIIQHEPIGVVGAVVAWNF
                     PMLLSSWKLAPALAAGNTVVIQPSSSTPLSLIELAKIFQEVLPAGVVNIVTGKGSESG
                     NAIFNHKGVDKLSFTGSTAVGYQVAEAGAKRLVPATLELGGKSANIILDDANLDLALE
                     GSQLGILFNQGEVCSAGSRLIVHENVYDEFIPRLVDAFKKVKVGDPLDMETQMGSQTG
                     QAQIDKIQSYIDYANESDGAKILVGGHRITDNGLDKGYFFEPTIIEVDDADDKLAQEE
                     IFGPVLVVIKVKDDEEAIDVANNSDYGLAGGVFSTNINRALNVAKNVRTGRVWVNTYN
                     QVPEGAPFGGYKKSGIGRETYKAAIENYQQVKNIYIDISNETKGLY"
     gene            complement(16837..17658)
                     /locus_tag="PTC08_000953"
     CDS             complement(16837..17658)
                     /locus_tag="PTC08_000953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HDK5682469.1"
                     /translation="MRIGTIADLHFDRHQRLTMEDYLEAVVRLIDQEALNMLIIAGDI
                     SNHYSTTFEFIAQLISEVTIPIYFIPGNHDLWRQPDEQLTTAEILRLYQDHPQCLMGT
                     PVEVDNYVIAGHMGWYDYSFAADRFTYDKLAKGKHYGATWQDKVYTAFGVSDPQLSQC
                     FAAEVWQDLVSYADRQVILVTHVVTHPKFTVPMPHRIFDFFNGFLGTSDFKPLYQHFN
                     IPYSVMGHVHFRKRLVDDNTTFLCPCLGYPREWRTDDLATELKHALQVIQIHEST"
     gene            complement(17957..18136)
                     /locus_tag="PTC08_000954"
     CDS             complement(17957..18136)
                     /locus_tag="PTC08_000954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682470.1"
                     /translation="MRESILRLIRSNQSCYDIYIHTGVSQGVISDLRSGYRTLDDVSL
                     KDAERLYDYAINVAA"
BASE COUNT         5338 a         4116 c         3167 g         5668 t
ORIGIN      
        1 ttcattatca acaaacttgt agaatctatt ccccaagaag cttttaatcc atattatagt
       61 caaagaggtc cttcatcata ccacccaaaa atgatgttaa aaatcatact gtatagttat
      121 acctattctg ttttttcacg ccgaagaatc gagtaccttt taaaaaatag ttgtcgaatg
      181 atgtggcttg cgcaagttca aacgtcaact tatagaacaa tcaatcgctt tagaatgaat
      241 ccccatatga tggaatttct acatatttta ttcgtcggtt taagagcaca attattagaa
      301 gataaactca ttacagagga tgtcatttat attgatggca caaaatagaa gcaaaagcga
      361 ataagtacac attccaatgg ctcgctaata cgaagcgttt tagtcagtct gtcattgaaa
      421 aatcaacggc attatatgaa caactcgttt ctgaagagat tattcctgaa atcaagcgtg
      481 aatctgggca tgaattaaca agtgaagaac tgaattaaat agaaactcat ttaagtttta
      541 aaaatgatgc gctcacgtct gaaattgaaa cgactcaaga tgtagagaca agaaaaaacc
      601 ttagaaaaaa aagaagtaag gtgagacaga gtaagaaggc tatccaagat tttaaagacc
      661 gtaaattaaa atatgacaaa caaatggaaa tttatggtga cagaaaaagt tattctaaga
      721 ccgatcatga tacgactttc atgagaatga aagatgatca tatgagaaac ggtcagttga
      781 aaccgggtta tagtctacag atagctacca ataatcaatt cgttttagct ttcggtgttt
      841 atagtcatcc aggtgataca agaacactcg aaccattttt aaaatcaatt cactgtgtcc
      901 tagcccctta ataactacag caatttctgc agttttagaa atcaaatttt aatgatttct
      961 taagtgttta tatgtgaata ttcgagtgtg ataatagtca ttaatttact attcaccctc
     1021 tcataacatc gagcgtgaga ctgtctaatc aaaaccccgt gtgaatgaag tcccccctaa
     1081 agttgaacct taccactcaa ctttaggggg gatactcatt tatgcgtggt gcttttgacg
     1141 tcgcataatc actaaacctg cacctagcat gaataggccg cctacgatag gtgcttgttc
     1201 tgtcgcacct gtgtttggta actgttgtgc gtcattctta gcttcatgat gacctaatgc
     1261 tgaaacattt tgtgtcatta ccctatgcgc ttgtgccatc tttcctgtcg catcagtaga
     1321 tatcatgctc actgctggta ccatggattg agccatacca cgatgttcag acgctacgtg
     1381 catagctgtt tgttgtgact gtccctctgc tgtcggcact tttgtcatcg gcaccacttt
     1441 ggatcgtttt gtttgcggga atagaatcac gttatcccct tttgatgacg gtggtgttat
     1501 ctttggcatt tcactgtttt gagctggttt accgttaata atacgttgtg gtgctgttgt
     1561 cgcatattgt gataaatcgg ctgttttcaa ataattcgca aagacttgtt cgagtgaaat
     1621 cccttcctca cgaggtcctc caaacatgtc aaaaccgtct ccacctgaag ctgtaaagtc
     1681 gttcatcgcg actgcatatg tccgactcat ttctagatct tcaaattgac ctgtttgctt
     1741 gtttaacacg cgaatcgcgt taatacgttc gccaggtgct ttattcatat cgaaataaac
     1801 ttgaattgat ttggatactt gtaacagacc gccatttgcc gataattgcg tttcaccgcc
     1861 agttgtcatc gttggtgcac ttaaactatg ttcgaaagcc ttccacacat cgctaccttt
     1921 gactgaaatt tgcgcgatcg tattgccgaa tggtaacacc gtaatcacat catttaatgt
     1981 cactttgcct ttcgcaatcg acgcacgaat cccaccactg tttgtcactg caaaatcaga
     2041 tggacgacta aaaccttttt gaccataagc ttccattgca tcagtaatgg cattccccaa
     2101 gttcgtttca tgtgttctta catcatcacg ttcaccttga aaatcaactg tattattcgg
     2161 aataatcact tctgatgttg ctttaagaaa tgcttcattc gctttatcga cttgtgcttt
     2221 cacagcagca tctggttgca acttcgctaa atttttgaca ttaagcaaac tcgcttcagc
     2281 attcgaaaac tgctgaccag actgtttgaa cgtcaattta cccacattcg cgagtgctgt
     2341 ccctgtttgc gctaatacgt cttgatcaaa cttttgacca tgttcaatca ccgtatgcga
     2401 atgcccatca ataacaaaaa tcggatgatg atattgttta ttttgactga gttgatgtgt
     2461 taaataatcc ccacgccatg cttctttggt tgtcggatca atccctaaat gagatagcac
     2521 gataaacaca tcaacttgcc cattcaaacg gtccatttca cgtgtcacac ttgttaacgg
     2581 atctgcaaat gtcacaccga caatgccttt tgggcttgtc tttgttttcg tttctggcgt
     2641 cgtcaccccg atcacaccat aacggacacc atttttttga atcacgactg atggtttaaa
     2701 tgccaatttc ccatctttgt atacattaga gctgacaatc ggaaagttaa gcatgccttc
     2761 caattttttc agttgatcat aaccaaagtc gaattcatgg tttcccgctg tcatggcatc
     2821 ataaccgact gcattcatcg ctttcgccat ttcttcccct ttagattggt tagataacgg
     2881 taagccttga aatgcatcgc ccgcatcgac aagtaaatcc ggattttgtt gttcctttaa
     2941 cgtcttcaac ttcgccatac caagcacgcg gtctttctct tccaccatgc gaccgtgaat
     3001 atcattcgta tgtaaaatcg tatgtgtcgt tgccgccgtt tcatgacttg cacgatcaat
     3061 tgatgtcgct tctggttgtg cttttttagc cgacaatctt aacatcattg gtgtgtcttt
     3121 tttcgcttga gcaacatttt ctgctgacgt tggtgcgatt gattcaattg tgtcatcttc
     3181 agtcgtagct accgttgcag tagctggccc ttcttgtttt agacctgtta cactttccga
     3241 tggctgttgt gctgtttctt ctgtagtagc tagctgttgt gatgtcacat ccggttgact
     3301 cgtatgcgtt gcagtcgttt cagcatctgc ttccacttga gtctccggag ctgcttgttg
     3361 tgatgtttgt tcggctgcat cacttgaaac gtgattgaag atcaacacag cgatgaccaa
     3421 caccatcaac agcatcatac ttttgagccc tgtccctttc atataaaacc tccttattgt
     3481 cattacaatt ttatcctagc acaaagcctc gaccaattgt ttaaaatttt tgttaatttg
     3541 gcgataaata tagaactcgc tcatccatta ccaaaaacga tatatattgc gtattttgtt
     3601 taacttgccc tattcttaag atttatgttt ttgattgccc tcatggcctc gcgttccgag
     3661 gggctgtccc ttcgactaac tcacgcttga ttaaactgtt acatttgttg aggcgttagt
     3721 ggattttggg agacgtacag aaatctcatg tgtaacaaag atttcgtcgt attgcccccg
     3781 caaggctgac tagacttctc aaaagcgaac gcattgagaa gtcagacagc tactgcgata
     3841 aatagtaccc actatataaa tatcagaaat catatttaag tctttgattc atcccctcag
     3901 gagtctcagc cctctaggca atcttacacc caatgcagtc acttagggca agttgatgaa
     3961 ataaagacaa tctattgcat ccaattcagt tttatatttc gacgatgtga gcatgattta
     4021 tggatataaa tccataaaaa taaacagaac tgggaaaact taatgaccca gttctgttta
     4081 ttttaaatga tgttaaactt tgataatccc gcttctgagc ttatttttct aagcaatcat
     4141 ccctactctc acattgcgat ttcatttcca aacaaaggag tcgagtatgc ccatacgccg
     4201 agacttatcc taacaatatt cagaggtaca cattttgatt gcgtcctgaa cgagacgctt
     4261 gagggatcag acgcagccga aaatccaatt cgccttctat caaatggaca cttctatcaa
     4321 gccgaattta gttgaggcaa gtcccctaag aacgcgagtt caaaggacgc aatcagctaa
     4381 atattcaagc cctcactttt ggtttatgac aaagcaatct cacgtgtcaa cgccatttcg
     4441 tccacccaac gcgctattgt ctttgcttgt gtcggatgca aatcgctata atcacgatcg
     4501 tcaatcaaaa ctgcatgccc tgcttctgcc cattcatatg ccgcttcaat cgcacgctgt
     4561 ctctcacctt taatcaacac cgtgtcaaaa tcagcacctg gcttcaatac cgcttcatct
     4621 aacgctctta caacttgacc tacaatcgta atgccaggtc ccaaacgttc aggcagtgct
     4681 gcaattcggt ccacaatcgt cgtcactgtg ccactgacca catgttgatc cgaacgtgtc
     4741 gcattaaaaa tgatcgcaac tggaaaatcg attccaattt gttgttgaat cgtacgcatg
     4801 agttcaggta atcgtttaat ccccatataa atcgcgagtg tgccgtcatt tgcgagtgtc
     4861 gtcaaatcaa tatcattttc ttcattattt ttaaaatgcc ctgttgtaaa cgtaatatgt
     4921 gtggaaacgc cgcgttctgt taatccacgg cccaactgac tcatcgcggc acttgctgca
     4981 gtcacaccag gtacgatttc aaatgggatt tggtgtgcac gtaacgtatc gacctcttct
     5041 gtgacacgtc caaatattgc agggtcgccc cctttcaagc gaacgaccac ttgtgccgct
     5101 tgcgcctttt ccactaacaa tgcattaatg cgcgcttgct tcgttgtacg tgtgtaaggt
     5161 gttttgccaa catgaatcca ctctgcatct gggcgtgata attgtaataa aaagggattc
     5221 acgagttgat catacaaaat gacatctgct ttttgaatac aacgctcagc ttttttcgtc
     5281 aacaaacatg gatcgcccgg acctgcaccg actaagtaca cttttgtcgc tgcttgcgtt
     5341 aagggagaca tatataaata tctccatcca cgacttcaac aggatatgtc gcgacacaac
     5401 cttcatcagg ctcttgtact tcacccgtgt ttaaatcaat cttttggtcg tgcagtggac
     5461 aaaatacata atgctcgctc actgtccctt cagataaagg accttgttga tgcggacaca
     5521 cgttatgaat cgctttaatg tcaccatctt ctgttaaaaa caatgcgaca ggcgtctcac
     5581 cgacatagac ttttttaccg attaatggtt ctaaatctgt taacttcgcc acttttactt
     5641 tttgttgtaa catcgcctta caccttctca acttcaaata ttttttgttt gcgttcattt
     5701 tccacaatgt catgccatgg ttcttgttcg acggcagctt tcgcaatcat aatacggtcg
     5761 tataatgctt gttgtttttc aggatcaagg accaccgctt taacttggtc aaatcctata
     5821 cgtctcaacc atggggctgt acgttctgca tagtttgctg tttcacgata atattgcatg
     5881 tacgcaccgc ataatttaat cacatcatct tctgttggta ctgtcgttaa atgttcagct
     5941 acttcaacag ttgtaccacc atttccaccg acgtatattt ggaacccatt ttctacaccg
     6001 atgacaccga aatcttttac accagattcg acacagctac gtggacaacc tgatacaccc
     6061 attttaaatt tatgtggcgt atcaatatat tcaaatgtcg cttccaaacg aatacctagg
     6121 cgtgttgtat attgcgtacc aaaacgacaa aattctttac ctacacagct tttcactgaa
     6181 cgtgttttct tcgcatatgc tgaagctgaa cgcataccga gtgcttccca aactgctggc
     6241 aaatcttctt tgttcacccc atacaagccg atacgttgag aacccgtgac tttcactaat
     6301 gggacatcat attgtttcgc tacttcaccg agacgaatca attgatctgc atctgtcaca
     6361 cccccacgca tttggggaat aactgagaat gtaccgtctt tttgaatgtt ggcatggtag
     6421 cgttcattcg caaaacgtga tgctttttca tcttcgtgtt cagttgggta caccatattt
     6481 aaatagtagt tcaaggcagg acgacatttt ggacaaccgc ctttgttttt gaaatctaac
     6541 acatgacgaa cttcttttga tgttttgagc ccttttgcgc gaatttgtgt cacgatttgg
     6601 tcgcgtgaca agtctgtaca tgaacaaata ccagtcggtg cgtttgcgac aaagtcatca
     6661 cctaatgtat gttcaagcaa ctctgcaatt tggcctttac atttaccaca agagttccct
     6721 gcttttgtga cacgtgtcac gtctgcaact gatgttaaat catgttcttg aatggcactc
     6781 acaattgtac cctttgagac accgttacaa ccacaaatcg tttcatcatc gtccatttct
     6841 gcaacgttca tcgcatcgac ttctcctgct ttatgcaaga ttgacacaag cgtataatca
     6901 tcaatcgttt cgcctttttt catcatattg tagaaacggt taccctcttc tgtatcccca
     6961 taaagcaccg cgccgacaat cgcatgatct tgaacgaata cctttttata aatgttgtca
     7021 ataccgttaa acatttcaat gccacggata tcgtcatttt cagtaatgcg acccgcactg
     7081 aacaagtcac aacctgacac ttttaatgat gtaaatgttg tcgaaccttg atacccttca
     7141 gttggacgtc ctgtaatatg gtctgccaac actttgcctt gttcgtataa aggcgcaaca
     7201 agaccgtata cttttgagcg atgttccgca cattcaccga ccgcatagat tttcggatca
     7261 ctcgtttgca taaagtcgtc cacgataata ccacgaccga tgtctaaccc tgctgcacgt
     7321 gcttctttcg taacaggacg gataccgaca gccatgacca ccatatctgc atcaagtaca
     7381 cgaccatccg ataaacgaat cccttcgact tgtttatcac caataatctc ttgtgtattc
     7441 gcttgaagtt caaaacgtaa tccttgtttc tctagatcct ttttcaacaa ttctcctgca
     7501 cgacggtcta attgtacttc catcaaccat tccgctaaat gtacgaccgt cacgtccata
     7561 ccttgttcga ctaagcctcg tgcacattct agccctaaca agcccccacc gatgacaatt
     7621 gctttctttt tcgttttcgc aacttctaac attttttcag tatcatcaat cgttctgaaa
     7681 ccgaccactc cttctaaacg tgagccatca atgggtaaaa tgaacgcgtc agaacctgtt
     7741 gcaataatca tttgatcata atcaacgact tgtccttgtt ctgtctcaac ttgttgtgct
     7801 tcacgatcaa ttttgactac cttatctcct gtaatgagac gaatgtgacg ctcttcatac
     7861 cattcgtatg ggttcataat cgtttcttct actgtcattt tattttgtaa aatgttcgat
     7921 aacataattc ggttatagtt cggatatggt tctttaccga taattgtaat atcaaaacgg
     7981 tctgggtcgc ggtctaaaat ttcttcaatc gtacgtaccc ccgccatacc gttgccgacc
     8041 attaataatt tcgttttact catcattatc ctcctcaagc gtcgccaaaa acgcctttat
     8101 tttcgccgca taagcttttg tatgttgaat tgactgcccc tctgaactga tactgatctt
     8161 catgccttga tgttcaatat ccagactgtt ataaaaatcc gattgtgtgc gatctcctgt
     8221 atgattcacc cattgcgtcg acgctgcatc atcacggact tgttgattca ctactgcgtc
     8281 atcagtcgca atgatgatga gattagcacc atccagatcg ccgcgttcat accgtttttg
     8341 aatcagctga atatgggtcc cccacgtttc attcaaaaag gcatcattaa aagtaggact
     8401 caccactttg atttgcatcg cctcatcttt taattttgtg aattttcgcc acgcaatgtt
     8461 tccaccaccg acgatgacga ctgatttatg tgttagattt agctggatag gatacatggt
     8521 gtcatgcctc cacatgcttc aagtcgattt aaaatcactt cttttaatac cgggtgaaaa
     8581 ttaattgctg tcgtaaaagt gacgtcacac ggtaaatcga gtgcgcctat acgttgcttt
     8641 gtacgctgca ctaaatagcc atcataaaag aaatacggaa taatcagtag tttcggccat
     8701 tgttgggcaa gttcagctaa gattttttca taatttaact tcccgtagac catacacgga
     8761 tagcatggtc gtgtcgctgt tgagagttgg ttcgcaatgg tttctaatgc gatgtcaggt
     8821 tcattaaaac gtgcactgcc atgcactaac acgacaacag ctgtatcttt caccgtctca
     8881 tctaggtaac gtgcgatttg cgatgccacc caatttttca tttttggatg tgtaccgagt
     8941 ggttgtgcca aataaaatgt cgtttgagga tacagttgac gccaaccttc taaactatcg
     9001 gcaatatctt cataatagtg tgatgccgaa aagagtaaca atggcactaa ataaagttct
     9061 gtcacgcctt gagtcacttg gtcttcaatc actgttggca aactcgccgt ctcactttcc
     9121 aaaaatgcca tcgcgtaatc catctgttcc gcttcaaata actgtgcaac aaattgtgtc
     9181 aatgtttcgt tcagttgtcc ctttctcatc ccatggacaa caaaaatcac tttacgcaac
     9241 acatcacccc ctacagttgt attgtagacg aaaaacgaaa tctaatgtga taaaattcac
     9301 ataaaaatta aaaaataggg aatcccctct cctgtatctt gagggaattc cctatcactt
     9361 atcaacgttg tcaccgctga atttatcggc acatgctttt cactttacaa ctaatgagat
     9421 gattcacctt gcgcccatgg tggtggtgcg agtaaatctt tattataacg ttctggaatt
     9481 aaaaccttta ccatcattgc accttcatcg cctgtttcat cttcaaatga aaagaatgtt
     9541 tcatagccac gacgttcata cacacctttt agccaactca ttttgcgcgc tgaagtccct
     9601 aatactacag caggcgcttt taatgtatca cgtaaaatcg tttcttccac atacgtcatc
     9661 atttgattgc catatcctac accgccataa tcgggttctg tcgcaaacca ccaaacaaac
     9721 gggtacttag aaactggctg actcggctcc catggaaaac gtatcgacaa ggttgaaaca
     9781 attttcccct ctacttcgag cacataagca gcattgtttt gaatattgtc ttgaatcatt
     9841 tctaatgtcg catttacgga cggccaatca atcccgacct ctcttaaagg tgtaaatgcg
     9901 cgatgcatca gtttatgcag ggcctctgca tcgtctaaag tagccattct aatgttaact
     9961 tgagacatag tgtcgcctcc ctttacattc atatgtagtt agattatcaa attttatatc
    10021 gtatagaaat taatacactt tgctcacttt gttcgatatg gatagaggta ccgttcgatg
    10081 ctgcgcttat tattttgttt aaacatattg atcacatgta tggtacatat tcatatcaaa
    10141 aaaagagctg aggtttaatg atggccccaa ctcttttatt gctattgtct atttattttt
    10201 gttcaatgcg acgtgagccg ttgaaatatg caaacaacag accgacaaat atgcccccac
    10261 cgatatagtt accgataaat gcgaagacga tatttttcag aacacctaac caagaagttg
    10321 catcaaaatt ataaaagatc atccctacga ataagcctgc attataaacg acgtgttcat
    10381 aacccataaa cacgaaaata atgacaccaa tcgcaatgaa aaacgttttt gacaagcctt
    10441 ctttatattg catagagaca taaatcccaa tattgataaa gaaattcgcg aagatggctt
    10501 tgactaatat cgcttgccat gtcgattcaa ctgttttggc gtcgactgtt gacgttaatg
    10561 ccgcaatcat ttcaggtgtc atcactttag tgaaatacat caatataaag agtacaaatg
    10621 cacctaaaat attaccgata aaacaaatag taaataacca catcgttttg ccaaatgata
    10681 ccgtacgata gtaaagaccc actgtcatat acataaagtt actcgtcaat agttcagctt
    10741 gtgttaagac gataaacact aaggcaatac tgaacgctgc cgctcccatt aaatttacaa
    10801 caccagggag cgccccagcc atttgcgtct tcattgcgag cataaacact gtgacaattg
    10861 tgagtaaaaa ccctgacagc atcgatttaa gtatgtaacg tggcatcgct ttatccagca
    10921 tcacttcttt catcgcaacg gaatggataa tgctttgtac cgtttctcgt gatgtatacg
    10981 tatccggaac tgtttttgtc ggtttttgaa tccccatagt tcaacctcca atttaatatt
    11041 caatcttgtt gatgattcat acaatgtcac ttacatttta catgaatctc attgcaattg
    11101 tcataaagtt tgtgaaaata aatacaaatt ctttgtcatt ttaaatcatt tttatttaca
    11161 ccccgacggc atgaaataaa aacagccaag tgaagtgtta tcccatactt ggctgctctc
    11221 atgtgttgct tcttatagta agcctaacca tttccaatac gtcatactca taatgacaac
    11281 gagaatgtaa ccgacgatcg taatcggaat ccccgctttt aagaagtctt taacagtaaa
    11341 tgtttctgta ccataagcga gcatactttg cggtgaactc accggcaata agaatccaaa
    11401 actgatgacg aattgttgaa ttaatacgaa accaatggcg ttgtcaccta ggcttaatgt
    11461 ggatgttaat gaaataaaga ctggaattaa tgcagatgct aaacttgtcg cacttgcaaa
    11521 tcctaaatga attaaaatgt taaacagtga aattaatgca atcgttgcta caatcggcat
    11581 acctttcaaa cccattaaac cgaatgtttg gtcacttaac cattgtgctg ctgtcgtttt
    11641 taataagacg ttacctaacg aaataccgac accgaataca atgatagtgc cccatggaat
    11701 acggctttcg acttctttcc aattcatgac accaattttg ggcgttaaca taatcgccaa
    11761 tgcaattaat gtgatagatg aagaatcgat tgggtgtaac actttttcag ttgaccaaga
    11821 cacgagtaat aataatgaga tgataattaa gcgccattct gttggtttaa ctggaccaag
    11881 ttctgccagt tgttgtttaa cgagctccgt accaccttca atggcatctt gttcaggtgg
    11941 aatgactttt aacataacaa aataaagcac gatagacatg atgattgacc aaggtgcggc
    12001 atataagaac cattcgcccc atgaaacgtc atgaccgagt tgatcattaa taaagttaat
    12061 tgctacgata ttttgagcag cagcggtttt aatcccgata ttccaaatcg ataccgcttg
    12121 tacagctgta atgatgagta acgcagctaa tttactattt ttcgttgccc caaacgccgc
    12181 aatcatacct aataaaatcg gtacaacagc gccagcacgt gctgtagcgg acggtacgaa
    12241 aaacgctaaa ataatagata caagaatcgc cccgataacg atatttttcg ttttattacc
    12301 gacaaacgat aatactaata gtgccaaacg tttatgtaag tttgtcactt gcatcgcggt
    12361 tgctaagaac aatgctgcag caactaacgc gacggcactc gttgaaaaac cactaaaggc
    12421 taacttcaat gcatttcctg taccgaataa gtcgtcacct tttaacaccg caccgccact
    12481 ttgaggattg cctaatgctt gtgttaaatt ttgaactgga ctaaatccga gtaagagtat
    12541 gatgagaccg acaataattg ttgcagatac cggataagtc accgcttcag tcacccataa
    12601 aatgactgca aatgccaaaa ttgctaatgc tgctttcccc attaacggta aacttgcagg
    12661 tgttggcatc aataacaccg caattaatgc aacaaagctt aaaataaacc ataacggctt
    12721 aaatgttgcc ccttcttttt tctttgaagc tgaagtagtt gccatttttg gctccccctt
    12781 ttgtgaattt ctttacttat attgtatcaa gaaagcgctt caaaaagata cctatgttca
    12841 aattttcaca aaaaattaat aactattgat tcagttgtat tttctgttcc ccgacatgaa
    12901 gccattgacg tttaatcata aaacgataaa tgacaaatgt gacgaatgca ggtaggacaa
    12961 agtgaaacat cataatgagt agccacgtat tcaaactcgc gcccatcgta ttgatcgtca
    13021 taatttgacc gactaagcca ctcgttccca tacctgcccc tgctgcattg ttcgtcattg
    13081 ggaagagaac cgtcatgatt ggcgcgataa tagcactcgc taatgtaggt ggcacgataa
    13141 tgagtggttt taacaatata ttcggcactt gtaacatact tgtcccgaga ccaattgaaa
    13201 tgataccact cactccattt tctttataac tcgtcactgc aaaaccaatc atttgacaag
    13261 cacaaccgat cgtcgctgca ccggctgcta atcctgataa atctaacatt aatgccagtg
    13321 ctgcactgga aatcggtgcc gttaaacata aaccaaagat gactgctaca agaataccca
    13381 tcacaaaagg ttgttgatcc gtagaaatca ttatcacttt tccgatttct aacatgagtt
    13441 gacttaacac cggacctaaa aatttggcca ctaaaccacc tatcattaat gtcagtagag
    13501 gtgtgacaat gatatcaatt ttcgttttag ctgcataaag ctgacttaat tccacagcga
    13561 taagcactgc aaaaaacgcc cctactgcac cacctgaaaa cgtctcataa ccgagcatac
    13621 caacaatgac tgcagcaaaa atcacgagcg gtttcccttt caaaccatac gcaatcgccg
    13681 ccccaatcgc tgcccccgtt aaactttgtg caacttttcc aacttcaact aaaaattcta
    13741 agtgaaggct tgggaataac gtttgcttac caatcgtttg cataattaat ccgataatga
    13801 gtgaactgaa aagcccaagt gtcatataac tgagaccatc gatgaaccaa cgatagagta
    13861 attttttcac tgagttgaac acttccaatc tttgttattt tgtttttata aatttcatat
    13921 taacataaca ttggaatatt tttgatttga atttgcattt ggacagatag catttaaaaa
    13981 tccagttcat tttcaagatt taggacataa aaagaagcct gagacttcaa catctcagac
    14041 tcctttatca aaattaatag aaaaagaccc tcattgataa tcattataaa ttctacaatt
    14101 gcctttatgg gcttgctttc ctaggggctg acccttcaac taaccaacgc tttgatttca
    14161 actttagttt ggtagaagat gcgttggtag attttgggag cagtacagaa atctcatgtg
    14221 caacaaagat ttcgtcgtat tgcccccgca aggctgacta gacttctcaa aagcatgcgc
    14281 cttgagaagt cagacagcta ctgcgatata caataaccac tgttaaagtt aaatgacgtt
    14341 attttgcttt ttacataatc cctcaggagt ctcgcccatt tgagcaattg aatttcaaag
    14401 atagtgaatc aatgagacct aacttacgaa tgataacatg acaagtatta aaattctcaa
    14461 gttccttatg ttgatatgca ttgtatattt caatattata tctttcatta atggtaggaa
    14521 gggggtaaga acttaaactt caccctctct cattattcaa tacatattaa tataaacctt
    14581 ttgtttcatt actaatatca atataaatgt ttttaacttg ttgatagttt tcgatagctg
    14641 ctttatatgt ttcacgaccg atacctgatt ttttgtaacc gccaaatggt gcaccttcag
    14701 gaacttggtt gtacgtattt acccatacgc gacctgtgcg cacatttttc gcaacattta
    14761 atgcacgatt gatattagtt gagaagacac cgcccgctaa gccgtaatca gaattattag
    14821 caacatcaat ggcttcttcg tcatctttaa ctttaatcac tactaacaca gggccaaaaa
    14881 tttcttcttg cgctaattta tcgtccgcat cgtccacttc gataattgtt ggctcaaaga
    14941 agtaaccttt gtctaaaccg ttatctgtaa tacggtgacc acctacaaga atttttgcgc
    15001 cgtcagattc gtttgcatag tcaatataac tttgaatttt atcgatttgt gcttgacctg
    15061 tttgagaacc catttgcgtt tccatatcta acggatcgcc cactttcact tttttaaacg
    15121 cgtcaaccaa gcgtggaatg aattcatcat acacattttc atggacgatt aatcgagagc
    15181 ctgcactaca tacttcacct tgattgaata aaatacctaa ttgggaacct tctaaagcta
    15241 aatctagatt cgcatcatct aaaataatat tggcactttt accaccaagt tctaacgttg
    15301 caggcacaag acgttttgca cctgcttcag ctacttgata accgacagca gttgaacccg
    15361 taaatgataa tttatcgaca cctttatggt taaagatggc attccctgac tcagaacctt
    15421 tacctgtcac aatgtttacc acacctgctg gtaacacttc ttggaaaatt ttcgccaatt
    15481 caatcaaact taatggcgtt gatgacgaag gttgaatgac aactgtattc cctgcagcaa
    15541 gggcaggtgc taatttccat gaagacagta acatcgggaa gttccaagcg accactgcac
    15601 ccacaacgcc gattggttca tgttgaatga tactcataat gtgatcttcc atattgttga
    15661 gcgtaccttc atcagtatct aacacactac cgaaatattg ataatgtttc gctgtataag
    15721 gtatatcgat actgcttgat tcacggatcg ctttccccgc gtttaaagtt tctacatatg
    15781 caaaatgctc ttttttctcc ataattttgt catggacttg acgtaacata ttcgcacgtt
    15841 ctgctttcga acgacgactc caatccggga aagctttcgt tgctgcttct actgctttat
    15901 ctacatcttt ttcacttgct ttagcgactt gtgacaattt ttcaccgttt gccggattat
    15961 atacatctaa atattcccct gattctgctg gaacaaattc accgttaata aataagttat
    16021 actgcgcatc aatataatct ctcacattta cactcatgta tattgcctcc ttatatttcg
    16081 acaccatttt aaatattcgg ataaaacaag cattgcaaca ttcttattca ttgcatttaa
    16141 tgatgtcgta ttcaatataa ctctaactgt attgtaaagc gctctcacaa aaaggtaaag
    16201 tactttgact tatatagaaa aaagtatctt cagcttcgta tttacccctt taaaaacgca
    16261 aaaaaacaag ccttcaatgg agaagacttg tctactgggg aaaaagaagt tagcctttac
    16321 ggctcatact tccaaacgtt attgtcatga gactaatgga agactcatgt tagaaaatga
    16381 ctgacacctt agtttagtaa aatatggttg attcaactaa acaaccttaa aaaaggcttt
    16441 aagaaacttc atcaatataa gctatatgtt gaagcatcta attggagtat aaacgataat
    16501 gtttcagttg taaataggaa atgttacgat ttatattgta tcgtgcttaa gtctgagata
    16561 atgtccctcc taacgtacga tgtgcaggga ccattttagc gatacaatga attcagaaca
    16621 gttcagacat cacgttgagt gaatgactgt tcgacttcat cccagataga catacttgaa
    16681 accccaatag acaaatgcta aatcaagtat atcctaaacc tccttttaag ataataaaac
    16741 taaagttgag caaagtcgat gtgtgccccg cgcatcggct ttatttttgt tttaagtgtg
    16801 ccgtgtcgtt ttatccgtgc tatgaacaaa agatatttat gtactttcat gtatttgaat
    16861 cacttgtaag gcgtgcttta attctgtagc aagatcatcc gttctccatt ctcgaggata
    16921 cccgagacac ggacaaagaa aagtcgtgtt gtcatctact aatcgcttcc taaaatgcac
    16981 atgccccatc acgctatatg gaatattaaa atgctgatac aacggtttaa agtcgcttgt
    17041 tcctaaaaag ccgttaaaga agtcaaaaat acggtgtggc atagggacag taaacttagg
    17101 gtgggtcacg acatgtgtca ctaaaatgac ttgacgatca gcataagaca ccaaatcttg
    17161 ccacacttcc gcggcaaaac attgtgaaag ttgtggatca gacacaccaa aagcggtata
    17221 cactttatct tgccaggtcg caccataatg cttccctttt gctaacttgt catacgtaaa
    17281 gcgatcagca gcaaaactat aatcatacca gcccatatgt ccggcaatca cataattgtc
    17341 gacttccaca ggcgtcccca tcaaacattg cgggtggtct tgatacaatc gcaatatctc
    17401 tgctgtcgtc aattgttcat cgggttgtcg ccataagtca tgattaccag gtataaagta
    17461 aatcggaatc gtcacttctg atatcagttg tgcgatgaac tcaaatgtcg tcgaataatg
    17521 gttagaaata tctcccgcaa tgatgagcat atttaatgct tcttggtcaa tgagacgcac
    17581 taccgcttca agataatctt ccatcgttaa ccgttgatgt cgatcaaaat gcaaatctgc
    17641 tatcgttcct attctcatca gtcgtcctcc tatcttcctc attatctcaa aagaaacaat
    17701 tacctgtgta gtcgaatgct ttacgccatg aattcaatat agtcatctac gtggctaaac
    17761 atgcgtgttt ttttgaaaag aatcatgcca catcagcctt aaagagaatc agaccgagat
    17821 gagtaaacga catatatctc ttttaaacac acaaaagcac caaacaacca acgttgcctg
    17881 atgctttatc attcgaactt tacaaaaagc tcaatcatct attaaagtct ccttaaatcc
    17941 tcgcttctgc atccctttat gccgcaacat ttatggcata gtcatataaa cgttctgcat
    18001 cttttaaaga cacatcatca agcgtacgat aacctgatct caaatcagag atcacacctt
    18061 gactgacacc tgtgtgaatg taaatatcgt agcagctttg gttagaacgg attaatctta
    18121 atattgattc tctcatgttt aacacatcct ttaatgatta cttcttcctt actttcatta
    18181 taccccttat tcgcaaaatt accacgattt tgtgatgctt ttcacataat catcacaatt
    18241 acaaatcaat acctattact tccgaaattc aaaattgaaa ctattcaaa
//
LOCUS       DANHOL010000039        17545 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.039, whole genome shotgun sequence.
ACCESSION   DANHOL010000039 DANHOL010000000
VERSION     DANHOL010000039.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 17545)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17545)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17545
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.039"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            130..858
                     /locus_tag="PTC08_000955"
     CDS             130..858
                     /locus_tag="PTC08_000955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase"
                     /protein_id="HDK5682471.1"
                     /translation="MLKKLIVTGLIATAATQVYAHDTQAAEKGATDAPNVMVKDEAKK
                     EVTPIIHKPTCIYPHLEGEDDAAYLKRMATNPPEGAVPYGVLNKDGSITEPNTNPHFD
                     VLKIEDPNAMKDLVDTPADDQDTVPSDLQIEPPALIGPATKHTDGTGDAKSNDDHKVT
                     KSSGASAQDMKKKDVTTQTAQPKADKKMATAKVAPAKQQDKAAKMLPAAGEPQVNAIS
                     QTALALSMIALGVIAFFTRRRKTN"
     gene            complement(908..2116)
                     /locus_tag="PTC08_000956"
     CDS             complement(908..2116)
                     /locus_tag="PTC08_000956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein RodA"
                     /protein_id="HDK5682472.1"
                     /translation="MVSSRQLTQKSFLRRLDWPLIALIIILCIISVTTIHSAMGGGQY
                     SLDFGVRQIFYYILGAIIAFMIMLFSPKKIRNYTYTVYIIFNILLFGLILLPESSITP
                     VINGAKSWYRFGPISIQPSEFMKIVLILVISKVVAQHNRFTFNKSFQTDVMLLLKIAG
                     VSFVPIALILLQNDLGTTLVFLAIIAGIVIVSGVTWKILAPLFGSAIVLGGSLILSII
                     YKPSLIENVAGIKTYQLGRINSWLDPYAYSSGDGFHLTESLKAIGSGQLIGKGLNNGE
                     VYIPENHTDFIFSVIGEEFGFLGSVILLGVFLLLLLHLIRMAMNSDDLFNKSFIIGFI
                     SLLLFHIFQNIGMTIQLLPITGIPLPFISYGGSSLWSLMSGVGVLLSIHYHTPKKYND
                     EATTQKRTTS"
     gene            2270..3340
                     /locus_tag="PTC08_000957"
     CDS             2270..3340
                     /locus_tag="PTC08_000957"
                     /EC_number="6.3.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HDK5682473.1"
                     /translation="MSKEALCIIYGGKSAEHDVSILTAQNVLNAIDKARYHIDIIYIT
                     NDGQWKKMDNITEDITDVEALRIDDVPTSDISAMLTQSSQGGRYDAVFPLLHGPNGED
                     GTIQGLFEVLDIPYVGNGVLAASSSMDKLVMKQLFAHRGLPQLPYVSFLRSEYEKYRK
                     NIIKLVHDKLAFPVFVKPANLGSSVGISKCEDEAALIKGIEEAFQFDRKLVIEQGVDA
                     REIEVAVLGNDYPETTWPGEVVKDVAFYDYKSKYKDGKVKLAIPADLDQDVQMTLRNM
                     AVEAFKATDCSGLLRADFFVTADNQIYINETNAMPGFTAYSMYPKLWENMGVSYSELI
                     TKLIDLAKARYEDKQKNKHRID"
     gene            3352..4716
                     /locus_tag="PTC08_000958"
     CDS             3352..4716
                     /locus_tag="PTC08_000958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
                     alanine ligase"
                     /protein_id="HDK5682474.1"
                     /translation="MINITLKQLAEWIDCDIDAQYLDVEIKGVTIDSRHIQHGQLFIP
                     FKGENVDGHQYSEQALNDGAGATFFQRDSTLTAPTNGPVVFVENTLTALQQLAKAYLQ
                     HVAPTVIAVTGSNGKTTTKDILENVLSGKFRVQKTQGNYNNEIGMPLTILELNEDTEV
                     SILEMGMSGFHEIELLSNIAQPDFAVITNIGESHMQDLGSREGIAKAKFEIVSGLKSE
                     GYFIYDGDEPLLKPHVETLTSAHQVSVGLSAKNDMQCQMVSHLEEGITFTVNDDVTYT
                     IPILGEHNMRNATIAIAVGRIMGLTDEQIQQQLTSLKLTDMRMQKFMAPNGAMVINDA
                     YNASPTSMKAAIDTLSHMKGETILVLGDVLELGEQSRQLHESVGAYLENKGIHQLYTF
                     GEGAMAIHEKGKAYVNEAIHFDQKDKLMRYLTSIVEQHSVVLVKASRGMHLEEVVEAL
                     VEAK"
     gene            4997..6484
                     /locus_tag="PTC08_000959"
     CDS             4997..6484
                     /locus_tag="PTC08_000959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017174792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HDK5682475.1"
                     /translation="MQKFTELGVSERTAETLEAMGFTEPTPIQKDSIPFALENIDILG
                     QAQTGTGKTGAFGIPLIEKVVGKEGVRALILAPTRELAMQVAEQLREFSRGQKVQVVT
                     VFGGMPIDRQIKSLKRGPQIVVGTPGRVIDHLNRRTLKPQQIETLILDEADEMMNMGF
                     IDDMRYIMDKLPSENRQTMLFSATMPKAIQELVQKFMKSPRIIKTMNNEISDPQIDEY
                     YTIVKELEKFDTFTNFLDVHQPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQ
                     AKRLEVLKKFKNDQIDILVATDVAARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRA
                     GKHGIAVTFVNPIEMDYIRQIEQTNRRQMRALRPPHRKEVLKAREDEIKSKVQSWMDA
                     AKEPRVENIAKQLLETYDQTELVTALLQELVESNDEVDVQLTFEKPLARKNGRSPKGN
                     RKGGNNKRHSKAGRNHKPSGNKKGNFKHKRETKVKKGRTFADHQK"
     gene            6723..7196
                     /locus_tag="PTC08_000960"
     CDS             6723..7196
                     /locus_tag="PTC08_000960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PH domain-containing protein"
                     /protein_id="HDK5682476.1"
                     /translation="MQLEFTQSPEPARRYLKLWYFCQFIVTLIILSAAVTVWFYNDMP
                     FYGTYIFIGLVLIDILYYLIHPILLYRYYHYRVTDSYIEIQKNWWFKRNEVIQIERIQ
                     YVRRKAGPLMRRFQLNRLSFYTAGHELVLPLLYDDTITEIESFCLTQLKGGDSDV"
     gene            7189..8718
                     /locus_tag="PTC08_000961"
     CDS             7189..8718
                     /locus_tag="PTC08_000961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PH domain-containing protein"
                     /protein_id="HDK5682477.1"
                     /translation="MYSPQRLHPISYVLSIIEAVKSNFLFVIIFVLFQLDSFDFTDWT
                     NYIWPGFIAISFTLVFINRTIEIYRTRYWIEGDYFIVKSGLFNLEQKELNIRRIQSMD
                     TVQPIVHQLVGGVKLTIKTPSDGIDLNMVTKRQSQWIQEEIEKAKSRIESEDGRQMQS
                     EHSSIATDEHYEAPPIIKTNAPTEMIYQLSTQNLLLMAMTSGAVFVTLATVGPIVTAF
                     EDIIPWEGVFGQVESWIKNLVALVITLVIGILVIAYIIGVIITMVRYYRFTLTRSGDF
                     LKIRYGLLKVTNLSLPIAKLQAVQEKKSFFRHLFGFTSYHFIITSDMEVDIEDDFASG
                     EIMVLPFIKQREGTKILASLLPIYSFQPVETGLPWQGFHRRFWIPSFILIGIGALIHY
                     YWWVWIWIPIAVIILYLIIHSVIATRMSGSGLTDEEVSIRKVTWFGFKTTTFKKDKIL
                     GFQQTAHPLMQQKQLVHFDFTIASGSVSKDFGLRFEHQAKVTRNKQWYLGGGDINGKD
                     E"
     gene            8702..9220
                     /locus_tag="PTC08_000962"
     CDS             8702..9220
                     /locus_tag="PTC08_000962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PH domain-containing protein"
                     /protein_id="HDK5682478.1"
                     /translation="MEKMSESGLKVMRIAALIMSAIIALLFIGAIVLGYFLAWDRFVI
                     ALIIILAIVLLLQLIIDVWLKPIYKYRTFGYTYDSHIVTVRKGFIMIKQTRIPTFRIQ
                     NVDFKEGWLMRKYQLATLTLSTAGGNVDVTLIDKATAQKVMAFIKNKDAKVPISEAKP
                     IVEQDEKEEGPL"
     gene            9217..9567
                     /locus_tag="PTC08_000963"
     CDS             9217..9567
                     /locus_tag="PTC08_000963"
                     /EC_number="2.7.8.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="holo-ACP synthase"
                     /protein_id="HDK5682479.1"
                     /translation="MIYGVGLDLVEIARIMDTVQRQPRFPERILSEQELERYHNYTTE
                     RRRIEFLAGRFAVKEAFSKAFGTGIGKEVTFKQIHCENDARGKPTIQMAGYHVHVSIT
                     HTEHYAAAQVILEQ"
     gene            9601..10749
                     /gene="alr"
                     /locus_tag="PTC08_000964"
     CDS             9601..10749
                     /gene="alr"
                     /locus_tag="PTC08_000964"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002457107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HDK5682480.1"
                     /translation="MSEKYYRTTTMKVNLDAITENYYALTKLQPNKTMMPVVKANAYG
                     LGSIQIAQHLSQLGAEFFCVATLDEAIELRMHGIKEKILILSSIPPDAINKAIQHRVA
                     VTVPSRAWLEAATAEIDEDNEKTLWLHIKVDTGMNRLGVKDIEAYHDIINFIYAHKNL
                     VFEGAFSHFHSADEDNDSAHMQYERFEEIIESTEHPTYIHMQNSAGTLRFNPSLCNAF
                     RPGIALYGYYPSAFIEKIATAQLAPAVQLVTEVMEVKSLIKGETVGYGQTYTAPEDMT
                     IALLPIGYADGYLRSMQGANVRIGTTECEIVGRVSMDRTAIRVPATVQMGEEVILIDD
                     QAHTSQSVESLAAQQQTINYEVLCNIGRRVPRVYFVQEMVEISNELLK"
     gene            10834..11004
                     /locus_tag="PTC08_000965"
     CDS             10834..11004
                     /locus_tag="PTC08_000965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011275271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antitoxin MazE"
                     /protein_id="HDK5682481.1"
                     /translation="MSAFNQTRFKNLEQSLKEGYVQMADLNLSLATEAYPVECEACDC
                     NESHLTTDYKED"
     gene            11005..11358
                     /locus_tag="PTC08_000966"
     CDS             11005..11358
                     /locus_tag="PTC08_000966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system PemK/MazF family
                     toxin"
                     /protein_id="HDK5682482.1"
                     /translation="MKRGDVYLADLSPVQGSEQGGVRPVVIIQNDTGNKYSPTVIVAA
                     ITGRINKAKIPTHVEIEKNKYKLDKDSVILLEQIRTVDKKRLKEKLTFLSEKKMKEVN
                     NAIGISLGLHMNHHK"
     gene            11416..12420
                     /locus_tag="PTC08_000967"
     CDS             11416..12420
                     /locus_tag="PTC08_000967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PP2C family protein-serine/threonine
                     phosphatase"
                     /protein_id="HDK5682483.1"
                     /translation="MTNQNESRYFQLVDQFLQSESKASVLNQAHSFSENLSDDALLPE
                     EFVDIHRKYVQKYELSREDMIAILDILRAVIGSFGYDYEDYKALVDRVEVHDKELDVA
                     SRLQQTMLKTNIPQFDGIQIGVISVAAQHVSGDYFNLIDHKDGTMSFAVADVIGKGIP
                     AALAMSMIKFGMDSYGHSQLPNDGLKRLNRVVEKNINQNMFVTMFYGLYEEINHVLYC
                     SSAGHEPGYIFRAESDTFEEIKVRGRVLGVSPHVRYQQQEIAINIDDMIIVFTDGVTE
                     IRKENGEFIDTRYLLNFILAYKQLHPQDIVQLLYEELLRLQKKGKRDDLTILIIKRVH
                     "
     gene            12499..12825
                     /locus_tag="PTC08_000968"
     CDS             12499..12825
                     /locus_tag="PTC08_000968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019468012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-sigma factor antagonist"
                     /protein_id="HDK5682484.1"
                     /translation="MNLNIETEKHETHYDVAVAGELDVATVPELEKVLVPIRQAGTHD
                     IYVNLEKLNYMDSTGLGLFVGTLKALNQHEKELYILGVNDRIKRLFEITGLNDLMHVN
                     EGTEVE"
     gene            12825..13304
                     /gene="rsbW"
                     /locus_tag="PTC08_000969"
     CDS             12825..13304
                     /gene="rsbW"
                     /locus_tag="PTC08_000969"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002448683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-sigma B factor RsbW"
                     /protein_id="HDK5682485.1"
                     /translation="MMQSNDIIEMRLPASAEYVSLIRLTLSGVFTRAGAHYDDIEDAK
                     IAVSEAVTNAVKHAYKDKEERGYIHVCFELASDRIKIVVSDQGDSFNYQETKQKLGPY
                     QENESIDFLREGGLGLFLIESLMDEVTVDKDTGVTISMIKYIKKEQVRNNDERVEIS"
     gene            13279..14049
                     /gene="sigB"
                     /locus_tag="PTC08_000970"
     CDS             13279..14049
                     /gene="sigB"
                     /locus_tag="PTC08_000970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor SigB"
                     /protein_id="HDK5682486.1"
                     /translation="MTKESKSASAVSPEQINQWIQAYQNDEDHEAQEKLVKHYEKLIE
                     SLAYKYSKGQSHHEDLVQVGMVGLIGAINRFDLSFDRKFEAFLVPTVIGEIKRYLRDK
                     TWSVHVPRRIKEIGPRIKKVSDELTNELGRSPSISEIAERLEVSDEDVLEAMEMGQSY
                     NALSVDHSIETDKDGSTVTLLDIMGQHDDNYELTEKRMILERILPILTDREREIIQCT
                     FIDGLSQKETGERIGLSQMHVSRLQRTAIKKLQEAARK"
     gene            14329..16479
                     /locus_tag="PTC08_000971"
     CDS             14329..16479
                     /locus_tag="PTC08_000971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002505949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding transcriptional accessory protein"
                     /protein_id="HDK5682487.1"
                     /translation="MTNHFVQAIHNQYQYPVKHIEAVLKLLEEKNTVPFIARYRKEVT
                     GGLDEVEIKQIADEYHYMEQLQKRKDEVIHSIEQQGLLTDELRRDIQQQTKLQRVEDL
                     YRPYKQKKKTRATEAKRKGIEPLAEWIYRQKLDADLGEKAQTFLTDEVTSVEEAIQGA
                     QDIIAEKIADHPQYRKQILKLTQKEGLMTALKKKKAEDEKAVFEMYYDYQEPLRQVAN
                     HRILAMNRGENEKILQVKIEMDKAILAQNIKKQEVKGHNELSTIVGEAIDDAMKRLIF
                     PSIEREIRTDLTERAEAQAITLFSENLKNLLLQPPLKGKQILGVDPAFRTGCKLAVIN
                     PYGTFIEKSVMYPHPPVSKVAEAEKVFLKMVKDFDINLIAIGNGTASRETEQFVARMI
                     QDHALDVQYIIVNEAGASVYSASEIARTEFPDFQVEERSAVSIGRRVQDPLSELVKID
                     PKSIGVGQYQHDVNQKALDAALDFVVETAVNQVGVDVNTASSTLLQHVSGLSRQIADN
                     IVLYREENGAITHHRQLNKVKRLGAKTFEQSIGFLRIVNGKEPLDNTAIHPESYDATY
                     QLLESLELKITDIGTSVLAKVLSTLDIASYARKLNIGVPTLEDIVKSLIAPNRDPRDD
                     YETPELKSDVLSIEDLSKGMKLNGTVRNVVDFGAFVDIGIKQDGLVHISKLAKKFIKH
                     PMDIVSVGDIVEVWIENIDENKGKVALTMIDPNE"
     gene            16472..16924
                     /locus_tag="PTC08_000972"
     CDS             16472..16924
                     /locus_tag="PTC08_000972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SprT family protein"
                     /protein_id="HDK5682488.1"
                     /translation="MNNESLQQLTEQLAMEHFGLPFKHRIYFNRRLRTTGGRYMLSSH
                     DIEINPKQYEHFGEQALVDIIKHELCHYFLHLSGRGHQHKDRDFKVLAEKVGAPRFCQ
                     PTESYTSRANYEYECQRCHSSYVRIRKVNVVKMRCGRCGGHLKLKRYL"
     gene            17279..17361
                     /locus_tag="PTC08_000973"
     tRNA            17279..17361
                     /locus_tag="PTC08_000973"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:17312..17314,aa:Leu,seq:gag)
     gene            17386..17459
                     /locus_tag="PTC08_000974"
     tRNA            17386..17459
                     /locus_tag="PTC08_000974"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:17418..17420,aa:Gly,seq:tcc)
BASE COUNT         5962 a         2881 c         3769 g         4933 t
ORIGIN      
        1 gcttaggaca ctgtgattaa ttataaagaa aggagtaaaa attgtagttc atgataaaaa
       61 taagtggatg ggttatatta atacgcgctc agttacagtg aaaaaataat tttaaaggga
      121 cgaactcata tgttaaaaaa attaattgtt acaggtttga ttgctacagc ggcgacacaa
      181 gtttatgcgc atgacacgca agcggcggaa aagggtgcta cagatgctcc gaatgtgatg
      241 gttaaggatg aggcgaaaaa agaagtgaca ccgataatcc ataaaccgac ttgcatttac
      301 ccgcatctag aaggcgaaga tgatgctgcg tatttaaaac gtatggcaac gaatccacca
      361 gaaggcgcag tgccgtacgg tgtattgaat aaagatggat cgattacaga accgaataca
      421 aatccacatt ttgatgtttt aaaaattgaa gatccaaatg cgatgaaaga tttggttgat
      481 acaccggcag atgatcaaga tacggtaccg agtgatttac aaattgaacc accagcatta
      541 ataggaccag ctactaaaca tacggatggt acgggagacg caaaatctaa tgatgaccac
      601 aaagtaacaa aatcttcggg agcgtcagcc caagatatga agaaaaaaga cgtgacaaca
      661 caaactgcac aaccaaaagc agataaaaag atggcgactg caaaagtagc accagcgaaa
      721 caacaagata aagcagccaa aatgttacca gcagcagggg aaccacaagt gaatgcaatc
      781 agtcaaacag cacttgcact ttcaatgatc gcattaggtg tcatcgcgtt ctttacacga
      841 cgacgcaaaa caaattaata attaaaaaga ggttggggaa acattttgtt cctcagcctc
      901 tttcttttta tgatgttgta cgtttttgtg tagttgcttc atcgttatac tttttcggtg
      961 tatgataatg aatgctcaac aacacaccga cgcctgacat gagactccag agcgaactcc
     1021 caccgtaact tataaagggt aatggaatcc ctgtaatcgg taaaagttga atcgtcatgc
     1081 caatgttttg aaaaatatgg aacaacaata aactaataaa accgataata aacgatttgt
     1141 tgaacagatc atcggaattc attgccatac gaattaagtg aaggagtaat aataaaaaga
     1201 cacctaataa gatgactgag cctaaaaagc cgaattcttc tccaataact gaaaaaataa
     1261 agtctgtatg attttcagga atataaactt cgccgttatt taatcctttt ccgatgagct
     1321 gaccagaacc aatagctttt aacgactctg ttaaatggaa tccatcgcca gaactgtatg
     1381 cgtacggatc gagccaagag ttgatacgtc ctaattgata cgttttaata ccggctacat
     1441 tttcaatcaa gctcggttta taaataatag acaagattaa gctgccacct agaacgattg
     1501 cgctaccaaa taaaggggct aaaattttcc atgtgacacc acttacaatc acgatacctg
     1561 caataatcgc taaaaagacg agtgttgttc ctaagtcatt ttgtaataaa attaatgcaa
     1621 ttggaacgaa gctcacacct gcaattttca gtaataacat gacgtctgtt tgaaatgatt
     1681 tattgaaggt gaaacgatta tgttgtgcga caacctttga aatgacaaga atgagtacaa
     1741 ttttcatgaa ttctgaaggt tgaatactga ttggaccgaa acgataccaa ctttttgccc
     1801 cgttaatcac aggtgtaatg gaagattctg gtaggagtat taatccaaat agtaaaatat
     1861 taaaaataat gtataccgta taagtgtaat tgcgaatctt tttaggtgaa aacagcataa
     1921 tcatgaacgc aatgattgca cctagtatgt aataaaaaat ctgtctgaca ccgaaatcaa
     1981 ggctatattg accgccaccc attgccgaat ggatcgtcgt aacactaatg atacaaagga
     2041 ttataatcag tgcgatgagt ggccaatcta agcggcgcaa aaacgacttc tgcgttagtt
     2101 gacgagagga taccatgcca atctccttta cacataaatt ctatattgtc attatatacc
     2161 gattttacat aagttgtaat caaattgcta atattctcgg aaaataaatg caatacaaat
     2221 aagagtcgtg gtaatatgga ggttagataa aaattatgga ggcggagtta tgtcgaaaga
     2281 agcattatgt atcatttatg gtggtaaaag tgccgaacat gatgtgtcaa ttttaaccgc
     2341 acaaaatgta ttaaatgcaa ttgataaagc gcgttaccac atcgatatta tttatatcac
     2401 taatgatggt caatggaaaa aaatggacaa tattaccgaa gatattactg atgttgaagc
     2461 gttacgcatt gatgacgtac cgacgagtga tatttcagcg atgttaacac aaagtagtca
     2521 aggtggccgt tatgatgcgg tattcccatt attacatgga cctaatggtg aagatgggac
     2581 gattcaaggg ctgttcgaag tattagacat tccatatgta ggtaatgggg tgttagcggc
     2641 atcaagttca atggataaat tagtgatgaa acaattattt gcacatcgcg gtttaccaca
     2701 attaccatat gtgagctttt taagaagtga atacgaaaaa tatcgcaaaa atattattaa
     2761 actcgtgcat gacaagttag cattcccagt gttcgttaaa ccggcaaatt taggttcaag
     2821 tgtcgggatt agtaaatgtg aagatgaagc tgccttgatt aaagggattg aagaagcgtt
     2881 tcagttcgac cgtaaacttg tcattgaaca aggggtggat gcgcgtgaaa tcgaagtggc
     2941 agtgttaggc aatgactacc ctgaaacgac atggcctggt gaagttgtga aagatgtcgc
     3001 attttacgac tataaatcaa aatataaaga tggcaaagtg aagctcgcaa ttccagctga
     3061 ccttgatcaa gacgtacaaa tgacgctccg taacatggct gtggaagcat ttaaagcgac
     3121 ggactgttct ggattgttac gtgcagactt tttcgtgaca gcagacaacc aaatctacat
     3181 taatgaaacg aatgcgatgc caggatttac agcttatagt atgtatccaa aattatggga
     3241 aaatatgggt gtttcttatt cagaattgat tacaaagtta attgatcttg cgaaggcacg
     3301 ttacgaagat aagcaaaaaa ataaacaccg aatcgattag gagttttgac tatgataaat
     3361 ataacgttga aacaacttgc agagtggata gactgtgata ttgatgcgca atacttagac
     3421 gttgaaatta agggtgtcac aattgattca agacatattc aacatgggca gttatttatt
     3481 ccttttaaag gtgaaaatgt tgacggtcat cagtacagtg aacaagcatt gaacgatggg
     3541 gcaggtgcga cgtttttcca acgagatagt acattgacag caccaacgaa cggaccagtc
     3601 gtttttgtag aaaacacatt gactgcactg caacagttgg caaaggcgta tttacaacat
     3661 gtggcgccaa cagtgattgc tgtcacaggt tcaaacggaa agacgacgac aaaagatatt
     3721 ttagaaaatg tcttatctgg aaagttccgt gtacaaaaaa cgcaaggcaa ttacaataac
     3781 gaaatcggca tgccgttaac aattttagag ttgaacgaag atacggaagt ttcaatttta
     3841 gaaatgggca tgtcaggttt tcatgagatt gagttactgt ctaacattgc acaaccggat
     3901 tttgcggtga ttacgaatat cggcgaatcc catatgcaag atttaggatc aagagaaggg
     3961 attgccaaag cgaagtttga aattgtgtca ggtttaaaat cagaaggtta tttcatttat
     4021 gatggagacg aaccattgtt aaaaccgcat gtagagacgt taacatctgc acatcaagtg
     4081 agtgttggtt tgtcagctaa gaatgatatg caatgtcaaa tggtgtctca tcttgaagag
     4141 ggcattacgt tcacagtgaa tgatgacgtg acctacacga ttcctatttt aggtgaacat
     4201 aatatgcgta atgcaacgat tgcaattgca gtgggccgaa tcatgggttt aacagatgaa
     4261 caaattcaac agcaattaac gtcgctcaag ctgacagata tgcgcatgca gaagtttatg
     4321 gcgccgaatg gtgcgatggt cattaatgat gcgtataatg caagcccgac gagtatgaag
     4381 gctgcgattg atacattgag tcatatgaaa ggagagacca tcctcgtgct cggtgatgta
     4441 ctcgaattgg gtgaacaatc gcgtcaattg catgagagtg ttggggctta ccttgaaaat
     4501 aaaggtattc atcaactgta tacgttcggt gaaggagcga tggccattca tgaaaagggc
     4561 aaggcgtacg tgaatgaggc gattcatttt gatcaaaaag ataagttgat gcgttatttg
     4621 acgtctatcg tcgaacaaca tagtgtcgtc ctcgttaaag cgtctcgagg tatgcattta
     4681 gaagaagttg tcgaagcact cgtagaagca aaatagcatc aagtttggaa cagagcgtga
     4741 atcatcactg tctttgttcc atttttaatt taaaaaataa aatgtacgca tcaaaaatta
     4801 ttattttgag atgcgtaaac ggagcctaaa ctctgtagtg atatgaattc aaagcataga
     4861 gaatatataa gaatttaaat gatagtgaac tttcgtttat tgcggtattg tgacgaaaat
     4921 ggtaatatgt agaagttaga ttaaacttat ttgacaaaaa tatagaagaa tgatgattca
     4981 aaaaaggaga attactttgc aaaaatttac agaattaggc gtttcagaac gtacagctga
     5041 aaccctcgag gcaatgggat ttacggagcc gacccctatt caaaaagata gtatcccatt
     5101 cgcactcgaa aacattgata tcctaggtca agcgcagacc ggaacaggaa aaacaggtgc
     5161 ctttggtatt ccattgatcg aaaaagttgt tggaaaagaa ggcgtgcgtg ctttaatttt
     5221 agcacctaca cgtgaattag cgatgcaagt agctgaacaa ttacgtgaat tcagccgtgg
     5281 tcaaaaagtc caagtcgtga ctgtatttgg tggtatgcca atcgaccgtc aaatcaaatc
     5341 attaaaacgc ggaccacaaa tcgtagtagg tacaccaggt cgtgtgattg accaccttaa
     5401 tcgccgtaca ttaaaaccac aacaaatcga aacgttaatt ttagatgaag cggacgaaat
     5461 gatgaacatg ggcttcattg acgatatgcg ttatattatg gataaattgc catcagaaaa
     5521 tcgtcaaacg atgttattct cggcaacaat gccaaaagcg attcaagaat tagtacaaaa
     5581 atttatgaaa tcgccacgta tcattaaaac gatgaataat gaaatttctg acccacaaat
     5641 tgatgaatat tatactatcg ttaaagaact tgaaaaattc gataccttta cgaatttctt
     5701 agatgtacac caacctgagt tagcgattgt gttcggtcgt acaaaacgcc gtgtcgatga
     5761 gttaactagt gcgttacttt caaaaggtta caaagctgaa ggtttacacg gtgatatcac
     5821 acaggcgaaa cgtttggaag tattgaaaaa gttcaaaaac gaccaaatcg atattttagt
     5881 tgcgacagac gtagcggcta gaggattaga catttcaggt gtgagtcatg tttataactt
     5941 tgatattcct caagatacag aaagttatac acaccgtatt gggcgtacag gtcgtgcagg
     6001 taaacatggt atcgccgtga cattcgttaa tccaattgaa atggattata tccgtcaaat
     6061 cgagcaaacg aaccgtcgcc aaatgcgcgc gttaagaccg ccacatcgta aagaagtttt
     6121 aaaagcacgt gaagatgaaa ttaagagcaa agttcaaagt tggatggacg ctgcgaaaga
     6181 accacgtgta gaaaacatcg cgaaacaact tcttgaaaca tatgatcaaa ctgagcttgt
     6241 aacagcgtta ttacaagaat tagtggaatc taatgatgaa gtagatgtac aattaacatt
     6301 tgaaaaaccg ttggcgcgta aaaatggtcg ttcaccaaaa ggcaatcgta aaggtggcaa
     6361 caacaaacgt cattcaaaag caggacgtaa ccataagcca agtggtaata aaaaaggcaa
     6421 cttcaaacat aaaagagaaa caaaagtgaa aaaaggacgc acatttgcgg atcatcaaaa
     6481 ataattagcg ttcaaccact taaataatta gcagcacagt gcatttcaat ggagatgtac
     6541 gtgctgcttt tttgatgctg tttaaggtga cacataagtt ccgagtctaa agtaaggtaa
     6601 atctttaact acagcgtatc gtggctaaaa tgaattttgt ctaacgccac catatcgaac
     6661 tatcagaatg aaaaaagttt atgatataat aatcctaaat ttactaggga gtgactgtca
     6721 tcatgcaact tgaatttact caaagtcccg aacctgcacg ccggtattta aagttatggt
     6781 atttctgtca attcatcgta actttaatca tcttatccgc tgcagtcact gtatggtttt
     6841 acaatgatat gccattttac gggacttata ttttcatcgg actcgtactg attgatattt
     6901 tatattattt gattcaccca atactccttt atcgttacta tcattatcgc gtgacggaca
     6961 gttatattga aatacaaaag aactggtggt ttaaacgcaa tgaagtgatt caaatcgagc
     7021 gtatccagta tgtgagacgg aaagcggggc cattgatgag acggtttcaa ctgaatcgat
     7081 tgtcttttta tacagctgga catgagttag tgttgccgtt actttatgac gacacgatta
     7141 cagagattga atcattctgt cttacgcaac taaaaggggg tgacagcgat gtatagtcct
     7201 caaaggttgc accctatttc gtacgtttta agtattattg aagcagtaaa aagtaacttt
     7261 ctttttgtta tcatatttgt attgtttcaa ctcgatagct ttgatttcac agattggacc
     7321 aattatatat ggccaggttt tatcgcaata tcgtttactc tcgtttttat taaccggacg
     7381 attgaaatct atcgcacacg ctactggatt gaaggcgatt attttatcgt gaaaagtggc
     7441 ttgtttaact tggagcaaaa agaacttaat attcgtcgta ttcaatccat ggacactgta
     7501 caaccgattg tgcatcaatt agtaggcggt gtgaaactca caatcaaaac acctagtgac
     7561 ggtattgatt taaatatggt gacgaaaagg cagagtcaat ggattcaaga agagatagag
     7621 aaagccaaat cgagaattga aagtgaagat ggaagacaga tgcagtccga gcattcaagt
     7681 atcgctacag acgaacacta tgaagcgcca cctatcatta aaacaaatgc acctacagag
     7741 atgatttatc aattatctac ccaaaattta ttattaatgg caatgacgag tggtgcagtt
     7801 tttgttacat tagcaacagt aggtccgata gtcactgctt ttgaagatat tatcccgtgg
     7861 gaaggcgttt tcggtcaagt tgagagttgg attaagaatt tagtggcgtt agtcattaca
     7921 ttagtaattg ggattctcgt aatcgcttat attataggcg tcatcattac aatggtgagg
     7981 tattatcgat tcactttaac acgttcaggt gactttttaa aaatccgtta tggcttatta
     8041 aaggtgacaa acttatcgct gcctatcgct aaattacaag cggtccaaga aaagaaatcc
     8101 ttttttagac atttgtttgg ctttacgtca tatcatttta ttattacaag tgatatggaa
     8161 gtcgatatag aggatgattt tgcgtcaggt gaaattatgg tgttgccgtt cattaaacaa
     8221 cgagaaggta cgaaaatttt ggcatctctt ctaccaattt attcgtttca accggttgaa
     8281 actggcctac cttggcaagg ttttcatcgc cgtttttgga taccgtcatt cattttaatc
     8341 ggtatcggtg cactcattca ttattattgg tgggtgtgga tatggatacc aatcgcggtc
     8401 attattttgt atttgattat tcatagtgtg attgcgacgc gtatgtcagg ttcagggttg
     8461 actgatgaag aagtatcgat tcgaaaggtg acatggtttg gttttaaaac gacgactttt
     8521 aaaaaggata aaattttagg tttccaacaa actgcacacc ctttgatgca acagaaacaa
     8581 ttagtacatt ttgattttac gatcgcaagt ggttcagttt ctaaagattt tgggttgcgt
     8641 tttgaacatc aggccaaagt tacacgtaac aagcaatggt atttaggagg tggagatatc
     8701 aatggaaaag atgagtgaaa gtggccttaa agtgatgcgt atcgctgcgt taatcatgtc
     8761 agccatcatc gcgctattgt tcattggtgc tatcgtatta ggttatttct tagcttggga
     8821 tcgattcgtg atagcactga tcatcatatt ggccatcgta ctgctcctcc aacttattat
     8881 cgatgtgtgg cttaaaccaa tttataaata tcgaacattt ggctacacat atgattcaca
     8941 tatcgttaca gtacgaaaag ggtttatcat gattaaacaa acacgtattc caactttcag
     9001 aattcaaaac gtcgatttta aagaaggatg gttgatgcga aaatatcagt tagcgacatt
     9061 aacactttcc acagctggag gtaatgtcga tgtaacgttg atcgataaag caactgctca
     9121 aaaagtgatg gcatttataa aaaacaagga tgcgaaagta ccaatatcag aagcaaagcc
     9181 gatagtagaa caagacgaaa aagaagaggg acctttatga tatatggtgt aggactcgat
     9241 ttagttgaaa tagcacggat tatggacact gtacagcgtc aaccccgctt tccagaacgc
     9301 attttatcag aacaagagct cgaacgttat cacaattata cgactgaacg tcgccgtatt
     9361 gaatttttag ccggacgatt tgcagtcaaa gaggcattca gtaaagcgtt cggtacggga
     9421 attggcaaag aggttacgtt taaacaaatt cattgtgaaa acgatgcacg cggcaagcct
     9481 acgattcaga tggcaggcta ccatgtacat gtttccatta cacatacaga acattatgca
     9541 gcagcacaag tgattttaga acaataatgg acgaatatag aaagaggaag gatgacaatc
     9601 atgtcagaaa aatattatcg caccaccacg atgaaagtga atttagatgc gattacagag
     9661 aattattatg cattaacgaa attacaaccg aataaaacga tgatgcctgt cgtaaaagcg
     9721 aatgcatacg gtttagggag tatccaaatt gcccaacatt taagtcaatt aggtgcggaa
     9781 tttttctgtg tggccactct ggatgaagcg attgagttaa gaatgcacgg tataaaagag
     9841 aagattttga ttttatctag cattccacct gatgccatta ataaagccat tcagcaccgt
     9901 gttgctgtta cagttccttc aagagcatgg ttagaagcgg cgactgcaga aattgacgaa
     9961 gataatgaaa aaacattatg gttacatatt aaagtggata caggcatgaa tcgacttggt
    10021 gtgaaagata ttgaagcgta tcatgatatt atcaacttca tttatgcgca taaaaatctc
    10081 gtctttgaag gcgctttctc acattttcat tccgctgatg aggacaatga ttctgcacac
    10141 atgcaatatg aacgctttga agaaattatc gaaagtacag agcatcctac gtacattcat
    10201 atgcaaaatt ctgcgggaac gttacgcttt aatccgtcat tatgtaatgc attcagacca
    10261 ggtattgcgt tatacggtta ctatccatca gcgttcattg aaaaaattgc aactgcacaa
    10321 ttagcaccag ctgttcaact cgttacagaa gtgatggaag tgaaatcact cattaaaggt
    10381 gaaacggtcg gatacggtca aacttacacg gcacctgaag atatgacgat tgcattattg
    10441 ccgattggtt atgcggacgg ctatttacgt tcgatgcaag gcgcgaatgt tagaattggc
    10501 accacggaat gtgaaattgt tggtcgggtg agcatggacc gtacagccat tcgtgtgcca
    10561 gcaacagtgc aaatgggaga ggaggtcatt ttaattgatg atcaagccca tacgtcacaa
    10621 tctgtagaaa gccttgcagc acaacaacaa acgattaatt atgaagtgct atgtaatatc
    10681 ggaagaagag tgccgcgtgt gtattttgta caagaaatgg ttgaaatatc caacgaattg
    10741 ttaaaatagt atggtgattc cgctctgttt ttgttatgat ggacataata aaaagagttt
    10801 ttaatgtgtt gtattgatat ggaggtccta tttatgtcag cattcaatca aacaagattt
    10861 aaaaatttag aacagtcgtt aaaagaaggt tatgtacaga tggcagattt aaatctctcc
    10921 ctagccactg aggcgtatcc agttgaatgt gaagcttgcg attgtaatga atcacacttg
    10981 acaactgatt acaaggaaga ctaaatgaag cgcggagacg tttatttagc agatttatca
    11041 ccagtacagg gctctgaaca ggggggagta aggcccgttg tcattattca aaatgacact
    11101 ggtaataagt atagtcccac tgtgattgta gccgcaatta ctggtcggat taataaggca
    11161 aagataccaa cgcatgtcga aatcgaaaaa aataaatata agctcgataa agattctgtt
    11221 attttactag aacaaattcg aacagtcgat aagaaacgat taaaagaaaa gttaacgttt
    11281 ttgtctgaga agaagatgaa agaagttaac aatgcgattg gtattagttt aggactgcac
    11341 atgaatcatc ataaataggc tttaggataa cgctcctaaa gccttttaca gttttaagtg
    11401 gaaggagaac gtttaatgac aaatcagaat gaatcgcgat actttcaact tgttgatcaa
    11461 tttttgcaaa gtgaaagtaa agccagtgtt ctcaatcaag cgcattcttt ttctgaaaat
    11521 ttatctgatg atgcattatt gccagaagaa tttgtagata tacatagaaa atacgttcag
    11581 aagtatgagc tgtcacgtga agacatgatt gcgattttag atattttaag agcggttatt
    11641 ggtagctttg gttacgatta tgaagactat aaagcattgg ttgaccgtgt tgaagtccat
    11701 gataaggaat tggacgtcgc ttcacgttta caacaaacga tgttaaaaac aaatatccca
    11761 cagtttgacg gtatccaaat cggtgtcatt tctgttgcgg ctcaacatgt gagtggcgat
    11821 tattttaact taattgatca taaagatggc acgatgagtt ttgcggttgc ggacgtcatt
    11881 ggtaaaggga ttccggctgc attagccatg agtatgatta agtttggcat ggattcgtac
    11941 ggccattctc aactccctaa cgatggtttg aagcgtttaa atcgcgtcgt agaaaaaaat
    12001 atcaatcaaa atatgtttgt taccatgttt tatggacttt atgaagagat taatcacgtt
    12061 ctttactgta gttcggcagg gcatgaaccg ggttatattt tcagagcgga atctgacaca
    12121 tttgaagaaa tcaaagttcg aggtcgtgta ttaggtgtaa gcccacatgt aagatatcaa
    12181 caacaagaaa tagccattaa cattgatgat atgattatcg tttttacaga tggtgtaacc
    12241 gaaattcgaa aagaaaacgg tgagtttatt gatactcgtt atttacttaa ttttatactt
    12301 gcatacaagc aattacatcc acaagatatc gttcaactct tatatgaaga attactgaga
    12361 ttgcaaaaaa aaggcaaacg agatgattta accattttaa ttattaagcg cgtgcactaa
    12421 agttgaaaaa tgagattaat gatgtattga aatgggtaaa atgaacaagt agagaataaa
    12481 gtaggagtgt aatcaataat gaaccttaat atagaaactg aaaagcatga aacacattat
    12541 gatgtcgcag tagccggtga actagatgtt gccacagtac cggaacttga aaaagtgctc
    12601 gttcctatac gtcaagcagg gacgcacgat atttatgtta atttagagaa gttaaactat
    12661 atggactcaa caggtttagg actatttgtt ggaactttaa aagcgttaaa tcagcacgaa
    12721 aaagaattat acattctagg tgtgaatgat cgtattaaaa ggttgtttga aattacaggc
    12781 ctgaatgatt tgatgcatgt caacgaagga acggaggtcg aatgatgatg caatccaacg
    12841 atatcattga aatgcgactt cctgcttctg ctgagtatgt cagtttaatt cgtttgactt
    12901 tatcgggtgt gtttacacgt gccggtgcgc attatgatga cattgaagac gctaaaattg
    12961 ctgtgagtga agcggtgacg aatgctgtga aacatgctta taaagataaa gaagaacgag
    13021 gctacattca cgtctgtttt gaactcgcat cagatcgcat taaaattgta gtgtctgatc
    13081 aaggtgatag ttttaattat caagaaacaa aacaaaaact aggcccttat caagaaaatg
    13141 aaagtattga tttcttgaga gaagggggac tcggtttatt cttaatcgaa tctttaatgg
    13201 atgaagtaac ggtcgataaa gatacaggtg ttacaattag tatgattaag tatatcaaaa
    13261 aagagcaggt gcgaaataat gacgaaagag tcgaaatcag ctagtgctgt ttcacctgaa
    13321 caaatcaacc aatggattca agcgtatcag aatgatgagg atcatgaagc acaagaaaaa
    13381 cttgtgaaac attatgaaaa actgatcgaa tccttagctt ataaatactc aaaaggtcaa
    13441 tcacatcacg aagatttagt acaggttggt atggtaggac tgattggtgc gattaatcga
    13501 tttgatttat catttgatag aaaattcgaa gcttttttag tccccactgt cataggtgaa
    13561 attaagcgct acttaaggga taaaacatgg agtgtccacg tcccacgtag aattaaagaa
    13621 atagggccga gaatcaaaaa agtgagcgat gagctaacaa atgaattagg acgttcaccg
    13681 tcaatcagcg aaattgcgga acgtcttgaa gtttcggatg aagatgtgtt agaagcaatg
    13741 gaaatgggac aaagttataa cgctttaagt gtcgaccatt ctattgaaac ggataaagat
    13801 ggctctacag tgactttgtt agatattatg gggcaacacg atgacaatta cgagttgact
    13861 gagaagcgaa tgatattaga acggatactt cctattttaa cagatcgtga aagagaaatt
    13921 attcaatgta catttatcga cggattgagt caaaaagaaa cgggagaacg tatcggatta
    13981 agtcagatgc atgtctcgcg attacaaaga acagctatta agaaattgca ggaggctgcg
    14041 agaaaatagt ggtacgataa aaggattggg atgttgggtt ccggtccttt ttgtgtttat
    14101 ggcaacttga attttgtcat ctgtggcttg atttcaaaca tagtgaggaa catctaatca
    14161 ttttatctgt gaagtagaat agatatggag ctttccagga ttgataaaag ttgcattagc
    14221 atggttttta tgagctatga tacacatgcg tcttacgtgc tcgctgacat acttttagag
    14281 atacgtgtta aaatgtagaa gaaaagattg agaaagcggt gaatactttt gacaaatcat
    14341 tttgtacaag caatacataa ccaatatcaa tatccagtta aacatattga agcggttctg
    14401 aaattattag aagaaaaaaa tactgtgcct tttattgcac gttaccgtaa agaagtgacg
    14461 ggcggtttag atgaagtcga aatcaaacaa attgctgatg aatatcacta tatggaacag
    14521 ttgcaaaagc gaaaagatga agtgatacat agtattgagc aacagggttt gctaacggat
    14581 gagcttcgac gtgacattca acagcaaaca aaattgcaac gtgtggaaga tttgtatcgt
    14641 ccctataagc aaaagaaaaa gacccgtgca acagaggcga aacgtaaagg catcgaacct
    14701 ttagcagaat ggatttatag acaaaagtta gacgctgact taggagagaa agcgcagacg
    14761 tttttaactg atgaagtaac ctcagtggaa gaagcgattc aaggtgcgca ggatatcatt
    14821 gctgaaaaaa ttgcagatca tccacaatat cgcaagcaaa ttttaaagtt gacgcaaaaa
    14881 gaagggctca tgacagcgct gaaaaagaaa aaggctgagg atgaaaaagc cgtgtttgaa
    14941 atgtattatg attatcaaga acctctccgt caagttgcga atcatcgtat tttagcgatg
    15001 aatcgtggtg aaaatgaaaa aatattgcaa gtcaaaattg aaatggacaa agcgattttg
    15061 gcacaaaata ttaaaaaaca agaagtcaaa ggccacaacg aattatcaac aattgtgggc
    15121 gaagcgattg atgacgcgat gaaacgttta atttttcctt ccattgaacg tgaaataaga
    15181 accgatttaa cagagcgcgc agaagcacaa gcgattacat tgtttagtga aaacttgaaa
    15241 aatctgttgt tacaaccacc attaaaaggg aagcaaattt taggcgtcga tccagctttt
    15301 cgaactggct gtaaactcgc agtcattaat ccgtatggga catttatcga aaaatccgtc
    15361 atgtacccac atccacctgt atctaaagtg gctgaagctg aaaaagtctt cttaaaaatg
    15421 gtgaaagact tcgatattaa tttaattgcg ataggaaatg gaacagcgag tcgtgaaacg
    15481 gaacagtttg tcgcacgtat gattcaagac catgcactcg atgtccagta tattattgtg
    15541 aacgaggcag gggcatccgt gtactcggcg tctgagattg cgcgtactga attccctgat
    15601 tttcaagtgg aagagcgtag tgccgtatcg attggtagac gtgtacaaga tcctttaagt
    15661 gaactcgtta aaattgatcc taagtcgatc ggtgtcggac aatatcaaca cgacgtgaac
    15721 caaaaggcgc tagatgctgc acttgacttt gtagttgaaa ctgctgttaa ccaagtcggt
    15781 gtggatgtca atacggcttc gagtacattg cttcagcacg tgtcagggtt atcacgacaa
    15841 attgctgata acattgtgtt gtatcgtgaa gaaaacgggg ccattaccca tcatcgtcaa
    15901 ctgaataagg ttaaacgatt aggtgcgaaa acgttcgaac aaagtatcgg atttttacgt
    15961 attgtgaatg gtaaagaacc gttagacaat acagcaattc atccagaaag ttatgatgcg
    16021 acttatcaat tattagaaag tttagaactc aaaattacag atattggcac atctgtatta
    16081 gcaaaggttt tatcaacatt ggatatagca agttatgcga ggaagttaaa catcggtgtc
    16141 cctacgttag aagacatcgt gaagtcatta atcgcaccaa accgagatcc tcgtgatgat
    16201 tatgaaacac ctgaattaaa gtcagatgta ttgtcgatag aggatttatc aaaaggtatg
    16261 aaattgaatg gaacagtgcg aaatgttgtt gatttcggtg cttttgtcga catcggcatt
    16321 aagcaagacg gtttagtaca catttcaaaa cttgctaaaa agtttatcaa acacccgatg
    16381 gacattgtca gcgttggaga cattgtagaa gtgtggattg aaaatattga tgaaaataaa
    16441 gggaaagttg ctctgacaat gattgatcca aatgaataat gaatctttgc agcaactcac
    16501 tgaacaactt gcaatggaac attttggact cccttttaaa catcgtattt actttaatcg
    16561 tcgtttacgt acaacgggtg gacgttatat gttatcttca catgatattg aaattaatcc
    16621 taagcaatat gaacattttg gtgagcaagc acttgttgat attattaaac atgaattgtg
    16681 tcactacttt ttgcatttga gtggtagagg gcatcaacat aaagatagag attttaaagt
    16741 attagctgaa aaagtaggtg cgcctagatt ttgccaaccg actgaaagtt atacatcaag
    16801 agcgaactat gaatatgaat gccaaaggtg ccatagtagt tatgttcgca ttagaaaagt
    16861 taatgttgtt aagatgcggt gtggtcgatg tggagggcat ttaaagttga aaaggtattt
    16921 ataagttgtt gaggcactat atgctgactg aagaatatga gcgatagtgc cttttttaat
    16981 gattgatttt atttttgtaa tatgtgcttt atgagaacca aaagttagaa aaatagggag
    17041 atatgtattg acattatttg tgtgcctgat tataataaca aagtcgtcaa aaaaagttgt
    17101 aagcagttca aaatgatgtt tgacaatgat gacgaaatgt tgtattctaa aattcgtcgc
    17161 aaaaagtgaa tgttaaagac agattacaaa cattaaaaaa acattaaaaa agtgttgaca
    17221 ctactaatgt gatataatat aataattatt gttctgaaaa aagaaaacat cgttccaagc
    17281 ggtcgtggcg gaatggcaga cgcgctaggt tgagggccta gtgggagaaa tcccgtggag
    17341 gttcaagtcc tctcggccgc atcaaccatc acttaaatta agtacgcggg tgtagtttaa
    17401 tggtaaaacc tcagccttcc aagctgatgt tgtgagttcg attctcatca cccgctccat
    17461 aaaacaaatt gaaatgaaca ttgaaaactg aatgacaata tgtcaacgtt aattccaata
    17521 atttgagtac ttcaaaagta ctttc
//
LOCUS       DANHOL010000040        17430 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.040, whole genome shotgun sequence.
ACCESSION   DANHOL010000040 DANHOL010000000
VERSION     DANHOL010000040.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 17430)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17430)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17430
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.040"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(<1..191)
                     /locus_tag="PTC08_000975"
     CDS             complement(<1..191)
                     /locus_tag="PTC08_000975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000384524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1146 domain-containing protein"
                     /protein_id="HDK5682489.1"
                     /translation="MDYLGQFAIAHIIMHVLCICVAYWGLNAVRLDQFFKKGFPLQVQ
                     VIMIFLAIVIGTSVSNFII"
     gene            complement(584..988)
                     /locus_tag="PTC08_000976"
     CDS             complement(584..988)
                     /locus_tag="PTC08_000976"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020220233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit epsilon"
                     /protein_id="HDK5682490.1"
                     /translation="MNTLTLDIVTPNGSVYKEDNVEIVVLQTTAGEMGVMYGHIPTVT
                     PLRIGHVKVTKDGKSDYIAVTEGFAEIRHEKVNILAQAAESADDIDLERAKSAKQRAT
                     FYLEGDRDDTDLRRAERALKRAENRIEVAKYK"
     gene            complement(1011..2423)
                     /gene="atpD"
                     /locus_tag="PTC08_000977"
     CDS             complement(1011..2423)
                     /gene="atpD"
                     /locus_tag="PTC08_000977"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017636767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HDK5682491.1"
                     /translation="MGLGRVTQVMGPVIDVRFEHNEIPNINNALLIDVSRDGETESLT
                     LEVALHLGDDVVRTIAMDSTDGVQRGAEVRDTGAAISVPVGDATLGRVFNVLGEHIDL
                     EEPIDAAVRRDPIHREAPKFDELSTEVEILETGIKVVDLLAPYIKGGKIGLFGGAGVG
                     KTVLIQELINNIAQEHGGISVFAGVGERTREGNDLYYEMKDSGVIAKTAMVFGQMNEP
                     PGARMRVALSGLTMAEYFRDEQGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQP
                     TLATEMGQLQERITSTNKGSVTSIQAVFVPADDYTDPAPATAFAHLDATTNLERKLSE
                     MGIYPAVDPLASTSRALEPTIVGQEHYDVARQVQSTLQKYRELQDIIAILGMDELSEE
                     DKKTVERARRIQFFLSQNFHVAEQFTGQKGSYVPVKQTVQDFKAILDGKYDHIPEDAF
                     RLVGGIDDVIAKAKDMGVEV"
     gene            complement(2448..3314)
                     /locus_tag="PTC08_000978"
     CDS             complement(2448..3314)
                     /locus_tag="PTC08_000978"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011302681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit gamma"
                     /protein_id="HDK5682492.1"
                     /translation="MASLKEIDSRIKSTKKTKQITNAMNMVSSSKLRKAEKNAMTFRP
                     YMEKMKDAITAIAGSNRVSSHPMLNERPVKRVGYMVITSDRGLAGAYSANVLKKMIRD
                     IEQRHNSPEEYRIIVLGQIGATFLQNRGYQLENTLTDIPDQPAFKTIQAIGKRAIDLY
                     VDEQIDELHIYYSHYVSVIENKPSSKKLLPLSPEDSSLGHGAMATYEFEPDKDAILKI
                     LLPQYIESLIYGTILDAKASEHASRMNAMKNASDNATEMIDDLSLQYNRARQAAITQQ
                     ITEIVGGSAALE"
     gene            complement(3352..4863)
                     /locus_tag="PTC08_000979"
     CDS             complement(3352..4863)
                     /locus_tag="PTC08_000979"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001829913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HDK5682493.1"
                     /translation="MAIKAEEISALLRSQIENYESEMSVTDVGTVIQIGDGIALVHGL
                     NDVMAGELLEFHNGVLGLAQNLEETNVGVVILGPYDEIKEGDEVKRTGRIMEVPVGEE
                     LIGRVVNSLGQPIDGQGPLNTTKTRPIEKKATGVMARKSVDEPLQTGIKAIDALVPIG
                     RGQRELIIGDRQTGKTTVAIDTILNQKDQDMICIYVAIGQKESTVRAAVEKLRQAGAL
                     DYTIVVSASAAQPAPMLYIAPYAGVTMAEEFMFNGKHVLIVYDDLTKQAAAYRELSLL
                     LRRPPGREAYPGDVFYLHSRLLERAAKLNDDLGGGSITALPFVETQAGDISAYVPTNV
                     ISITDGQIFLQSDLFFSGIRPAINAGLSVSRVGGSAQIKAMKKVAGTLRLDLASYREL
                     ESFAQFGSDLDEATASKLERGKRTVEVLKQDQNKPLPVEHQVLIIYALTRGYLDDIPV
                     VDITRFEAEIIEWTKSNANEIFTEIRETGGLPADEKFESAINEFKKGFKASEE"
     gene            complement(4890..5429)
                     /locus_tag="PTC08_000980"
     CDS             complement(4890..5429)
                     /locus_tag="PTC08_000980"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit delta"
                     /protein_id="HDK5682494.1"
                     /translation="MANVAQKYAQALYDVTLSHNILSEVYDEFTEINTAVESQIDYLK
                     GIDYEPKITIADRRHIVDNVFAGTQPYLMNTLKIVAGHRNLHLIPAIFKAFEAQYYQF
                     HGLADAYVESASTLNEDELMQVTNALLDRTGLKDLIIHSTVNEELIGGVRVKIGTKVY
                     DGSVQNDLNQLVKKFNRVH"
     gene            complement(5429..5953)
                     /locus_tag="PTC08_000981"
     CDS             complement(5429..5953)
                     /locus_tag="PTC08_000981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B"
                     /protein_id="HDK5682495.1"
                     /translation="MIVTANLFTLAAAGGGVNIGDIIVTVVTFLILLALLRKFAWGPL
                     KKVMDDRERSINQDIDDAERAKLNAQRLEEENRQKLKETQDEVHKILEDAKLQARRQQ
                     EEILHEANQRANGMLETAQSEIKSEKERALAEINNQVSELSVLIASKVLRKEISEQDQ
                     KALIEKYVKEVGDK"
     gene            complement(6114..6326)
                     /gene="atpE"
                     /locus_tag="PTC08_000982"
     CDS             complement(6114..6326)
                     /gene="atpE"
                     /locus_tag="PTC08_000982"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit C"
                     /protein_id="HDK5682496.1"
                     /translation="MNLIAAAIAIGLSALGAGIGNGLIVSRTVEGVARQPEARTQLMS
                     IMFIGIGLVEALPIIGVVITFIVLFI"
     gene            complement(6369..7091)
                     /gene="atpB"
                     /locus_tag="PTC08_000983"
     CDS             complement(6369..7091)
                     /gene="atpB"
                     /locus_tag="PTC08_000983"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011275237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HDK5682497.1"
                     /translation="MDHKHPVVTWHFLGVDINFNLSTIMMLLVTAVIVFVIAVLCTRN
                     LQKRPKGAQNFIEWVFDFVRGIIESNMAWSKGGQFHFLAVTLILFIFVANMLGLPLQF
                     VNGHTLWWKSPTADAHVTLTLATMMVLLTHYYGVKMRGPKAYLKGYSKPYLALLPINV
                     FEEFASTLTLGLRLYGNIYAGEILLGLLSKVTLTVAFGFIIGIPGLIIWQGFSIFVGS
                     IQAYIFIMLSMVYMSHKVADNH"
     gene            complement(7126..7482)
                     /locus_tag="PTC08_000984"
     CDS             complement(7126..7482)
                     /locus_tag="PTC08_000984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase subunit I"
                     /protein_id="HDK5682498.1"
                     /translation="MNRFYKMFQPFLTYYATILAGLLILYSLDVQQPIVLGLIVGIIA
                     SIVNTCIFEYYLWRAKRFSAEPISTGNGWRYLVAILACVIWVLFQAQIHILGVLIGLM
                     VSYVLMVFRPLLKKES"
     gene            complement(7651..8790)
                     /gene="wecB"
                     /locus_tag="PTC08_000985"
     CDS             complement(7651..8790)
                     /gene="wecB"
                     /locus_tag="PTC08_000985"
                     /EC_number="5.1.3.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase
                     (non-hydrolyzing)"
                     /protein_id="HDK5682499.1"
                     /translation="MKRIMTIFGTRPEAIKMAPLVLQLKKDEALEPIVVVTAQHREML
                     DSVLDTFGIEPDYDLNVMKQGQTLSEVTSRVLLGLEDVIKKAQPDMILVHGDTTTTFA
                     GSLAAFYNEISIGHVEAGLRTWNKYSPFPEEMNRQMTGIMADLHFAPTEQAQANLLQE
                     NKDPEKVVVTGNTAIDAMHTTVDPQYQSDIIQRHQDKRIILLTAHRRENIGEPMHHIF
                     KAARRIVEEFEDAVIVYPMHKNPKVREIAYKHLSNHERIELIEPLEVVDFHNFAHQAH
                     FILTDSGGVQEEAPSLGKPVLVLRDTTERPEGVEAGTLRLVGTEEADVYEATKALLTD
                     EALYEAMSVAQNPYGDGQASQRICENIKYFYGLIDQKPAPFRVDK"
     gene            complement(8813..9442)
                     /gene="upp"
                     /locus_tag="PTC08_000986"
     CDS             complement(8813..9442)
                     /gene="upp"
                     /locus_tag="PTC08_000986"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017636774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil phosphoribosyltransferase"
                     /protein_id="HDK5682500.1"
                     /translation="MGKVHVFDHPLIQHKLSFIRDVNTGTKAFRELVDEVGMLMAYEV
                     TRDLELQEVEIETPVTKAIAKRLSGKKLAFVPILRAGLGMTTGILNLVPAARIGHVGL
                     YRDPETLEAIEYFVKLPQDIEEREIIVVDPMLATGASAIEAINSLKKRGAKHIRFMCL
                     IAAPEGVEKLQAAHEDVDIFIAALDEKLDDNAYIIPGLGDAGDRLFGTK"
     gene            complement(9476..10714)
                     /locus_tag="PTC08_000987"
     CDS             complement(9476..10714)
                     /locus_tag="PTC08_000987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HDK5682501.1"
                     /translation="MSFLAKQDKSVFESIQKEFHRQNTSIELIASENFVSEAVMEAQG
                     SVMTNKYAEGYPGRRYYGGCVFVDQTEQLAIDRAKALFNAEHVNVQPHSGSQANMAVY
                     LVALEHGDTVLGMNLSHGGHLTHGSPVNFSGKFYNFVEYGVTKDEEHIDYEEVRKLAK
                     EHKPKLIVAGASAYSRSIDFKKFKEIADEVGAKLMVDMAHIAGLVAAGLHQNPVEFAD
                     FVTTTTHKTLRGPRGGMILCKEEYKKEIDKTIFPGIQGGPLEHVIAAKAVAFGEALQP
                     EFKTYQQQVIKNAQMLAKTLKDNGFRIVSGGTDNHLVSVDVKGSVGITGKVAEEALDE
                     IGITCNKNTIPFDQEKPFVTSGIRLGTPAATTRGFDENAFEEVGRIISDVLKNHEDQK
                     VLADAKSRVQALTEKFPLYQ"
     gene            complement(10735..11262)
                     /locus_tag="PTC08_000988"
     CDS             complement(10735..11262)
                     /locus_tag="PTC08_000988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01440 family protein"
                     /protein_id="HDK5682502.1"
                     /translation="MQDLNQLLEELKAQSFFNEGEICVIGCSTSEVQGERIGTTGSID
                     VAQEIFEALVKIQQETGVSFAFQGCEHINRAITIERKDFDPYVMTEVSVVPDVHAGGS
                     LSTHAYRHMEAPMVVEHIRADKGIDIGQTLIGMHLKHVAVPVRTTVKQVGQAIVTVAT
                     SRPKKIGGERAKYQL"
     gene            complement(11380..11805)
                     /locus_tag="PTC08_000989"
     CDS             complement(11380..11805)
                     /locus_tag="PTC08_000989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low molecular weight protein arginine
                     phosphatase"
                     /protein_id="HDK5682503.1"
                     /translation="MKIVFVCTGNTCRSPLAESIAKQLMPDFEIVSRGLMAQEGQPIS
                     SHSRELLRRHELPIPKGAQLFDAGDAEADLILTMTTAHRQMIQAMYGPQVNVYALNDY
                     VDEDLPVEDPYGGQYETYEQVFEQLTRMIDKLKSKLVTE"
     gene            complement(11802..12854)
                     /locus_tag="PTC08_000990"
     CDS             complement(11802..12854)
                     /locus_tag="PTC08_000990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonylcarbamoyl-AMP synthase"
                     /protein_id="HDK5682504.1"
                     /translation="MSETKIWDVRDYTTRLEEYPKLPEIVKTLQDGGLVVLPTETVYG
                     LGGNAKDDTAIRKIYEAKGRPSDNPLIVHIHDTDQLDDFVADISESTRKLMEAFWPGP
                     ITFILPLKQGFLCDRVTGGLNSVAVRMPSHPVALALLKAVDLPIAAPSANLSGRPSPT
                     TFEHAFHDLNHRVEGIMRSTQSDAGLESTVVDCTSFPFRIARPGTITRNMLNDILPQS
                     VEVHSPLATEKPIAPGMKYRHYAPSTPLKMITQLNAPIHEDAHEDWSKIAFIVPETKK
                     KFLPASAQVIVISESESDIQGANHNLYDVLHQLDQLNDVDMAYIYGFEDNFDTEALRN
                     RMLKAVSQQVVKDESL"
     gene            complement(13020..13862)
                     /gene="prmC"
                     /locus_tag="PTC08_000991"
     CDS             complement(13020..13862)
                     /gene="prmC"
                     /locus_tag="PTC08_000991"
                     /EC_number="2.1.1.297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor N(5)-glutamine
                     methyltransferase"
                     /protein_id="HDK5682505.1"
                     /translation="MNYKEWRQQAEQQMVVKGYEPNAIQWFMMDTLQWSRTSLILNEM
                     TPIAESTLKQLNDGLSQLLTGMPVQYVVGQSEFYGRQFKVNSDVLIPRPETEEVVHYF
                     LTQLAAAKVVADIGVGSGAIAITLKAERPELRVIATDISFQALAVARENAQRLQRDIT
                     FLQGNALQPLIDQDVRLDGLISNPPYIGEHERTLMDNSVIQYEPHVALFAAQEGYQVY
                     AAILRDLPHVMQDGAPVVFEIGFQQGAQLTRMMQQLYPHITPEVINDINGHARIFHFK
                     WTQP"
     gene            complement(13852..14928)
                     /gene="prfA"
                     /locus_tag="PTC08_000992"
     CDS             complement(13852..14928)
                     /gene="prfA"
                     /locus_tag="PTC08_000992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015445905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HDK5682506.1"
                     /translation="MFDQLDIVEERYEQLNELLSDPEVVSDSNLLRKYSKEQSELQKT
                     VEVYRQYKQVKEDAEEIELMLAETDDADEVEMLKEEASALKAEVPELEEQLKLLLIPK
                     DPNDEKDVIVEIRGAAGGDEAAIFAGDLFRMYSKFAESHRFKLEIVEATESDHGGYKE
                     ISFSVSGDGAYSKLKYENGAHRVQRVPETESGGRIHTSTATVAVLPEVEDVEIEIRNE
                     DLKIDTYRSSGAGGQHVNTTDSAVRITHIPTGVIATSSEKSQIQNREKAMKVLKARLY
                     DMKLQEEQQKYAAQRKSAVGTGDRSERIRTYNYPQSRVTDHRIGLTLQKLDQIMEGKL
                     DEIVDALTMHEQTEKLKELNTGEL"
     gene            complement(14928..15530)
                     /locus_tag="PTC08_000993"
     CDS             complement(14928..15530)
                     /locus_tag="PTC08_000993"
                     /EC_number="2.7.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidine kinase"
                     /protein_id="HDK5682507.1"
                     /translation="MYEAYHSGWIECITGSMFSGKSEELIRRLRRGVYAKQKVVVFKP
                     TIDDRYHKEKIVSHNGNEIEAINISKASEIWRHDLNGVDIIGIDEIQFFDRDIVDIAQ
                     TLAERGYRVITAGLDMDFKGEPFHPVPEMLAVSEHITKLQAVCAVCGASSSRTQRLID
                     GKPAKVDDPIILVGANESYEPRCRAHHIVAPSENDKEALE"
     gene            complement(15878..16132)
                     /locus_tag="PTC08_000994"
     CDS             complement(15878..16132)
                     /locus_tag="PTC08_000994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type B 50S ribosomal protein L31"
                     /protein_id="HDK5682508.1"
                     /translation="MKQGIHPEYRKVIFLDTTTDYKFLSGSTKFSNETMEWEDGNEYP
                     VIRLDISSDSHPFYTGRQKFAAADGRVERFNKKFGLKSDN"
     gene            complement(16255..>17430)
                     /gene="rho"
                     /locus_tag="PTC08_000995"
     CDS             complement(16255..>17430)
                     /gene="rho"
                     /locus_tag="PTC08_000995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor Rho"
                     /protein_id="HDK5682509.1"
                     /translation="LAIMEAQMEQDGNYYMEGILDDIQQDGYGFLRTVNFSKGEKDIY
                     ISASQIRRFEIKLGDKVTGKVRKPKENEKYYGLLQVDFVNDHNAEEVKKRPHFQALTP
                     LYPDERIKLETEPRNYSTRVMDLITPIGLGQRGLIVAPPKAGKTTLLKEIANAIVTNK
                     PNAKLFILLIGERPEEVTDIERSVDEAEVVHSTFDEHPKHHVKVAELLLERAKRLVEI
                     GEDVIILMDSLTRLARAYNLVVPPSGRTLSGGLDPASLHGPKTFFGAARNIEAGGSLT
                     ILATTLVDTGSRMDDMIYEEFKGTGNMELHLDRRLSERRIYPAIDISRSSTRKEELLV
                     PKNELDSLWQLRNMFSNSPDFTERFIRKLKKTKSNAEFFELLQQSAAESSKTGKPII"
BASE COUNT         4930 a         3808 c         3014 g         5678 t
ORIGIN      
        1 tcaatgataa aattactcac acttgtgcca atcactattg ccaaaaatat catgatgact
       61 tgtacttgta atggaaatcc ctttttgaaa aactggtcta aacgaacggc gtttaatccc
      121 caataggcga cacaaatgca taaaacatgc attataatat gtgctatcgc aaattgtcct
      181 aaataatcca ttaattgata ttgctccttc acatataatc tcttttacta attttacatg
      241 atttaaagcc caaatcatac tataagcaac ttaaagaaac acaatttttc acattataat
      301 gcttaatgac aagcaattta cattttactg gctttcatag tttttgtata gaatttttgc
      361 aaagcatgtg ccaacttttc agcatgtaaa atgtaagcgt tatcaccttg agagtcgtct
      421 tactatattt acaaagtcag tcgatatgtc tacatctact caaatgtgtc taaggaaatt
      481 ttacaggttg cttcaatgtc gaccgttacc ttgtcgcctt gaataacgcc aaaaagctcg
      541 gtctgccacg agggacatac cgagcttttt gatgtgcata tgattattta tatttcgcaa
      601 cttcgatacg attttcagcg cgcttcaatg cacgttcagc acgtcttaaa tccgtatcat
      661 cacgatcgcc ttcaaggtag aatgttgcac gttgtttcgc tgatttcgca cgctctaagt
      721 caatatcatc tgctgactct gcagcttgag ctagaatgtt cactttttcg tgacgaattt
      781 cagcaaaccc ttctgttaca gctatataat ccgatttgcc atctttagtc actttcacat
      841 gaccaatacg caatggtgta accgtcggaa tgtgaccgta catcacaccc atctcgcctg
      901 ctgtcgtttg taagacaaca atttcgacat tgtcttcttt ataaacagaa ccattaggag
      961 tgacgatatc taaggttaat gtgttcatta tccaagcctc ctaatttgta ttaaacttct
     1021 acacccatgt ctttagcttt agcgatcaca tcatcaatgc cgcccactaa gcggaatgca
     1081 tcttctggaa tgtggtcgta tttaccatct aaaatggctt taaagtcttg aactgtttgt
     1141 ttaactggta catatgaacc tttttgacca gtaaattgct cagcgacgtg gaagttttgt
     1201 gataagaaga attgaatacg acgcgcacgt tcaactgttt tcttatcttc ttctgataac
     1261 tcatccatac ctaagattgc gataatatct tgcaattctc gatatttttg taacgtcgat
     1321 tgaacttgac gtgcaacatc ataatgctct tgtccgacaa ttgttggctc taaagcacgt
     1381 gacgttgaag ccaatggatc caccgctggg taaataccca tttcacttaa tttacgctct
     1441 aagtttgttg tcgcatctaa gtgagcaaaa gctgttgctg gtgccgggtc agtatagtca
     1501 tcggcaggta cgaatacagc ttggattgac gtaacagatc ctttgtttgt agatgtaata
     1561 cgttcttgta gttgacccat ttctgttgca agtgttggtt ggtaacctac tgctgatggc
     1621 atacgaccta ataatgccga tacctcagaa cctgcttgtg tgaaacggaa gatgttgtca
     1681 atgaacaata acacgtcttg accttgttca tcacggaaat attcagccat tgttaaacca
     1741 gaaagtgcaa cacgcatacg cgcacctggt ggctcgttca tttgaccaaa taccatcgca
     1801 gttttcgcaa taacaccact gtctttcatt tcatagtaca agtcgttacc ttcacgtgta
     1861 cgttcaccta caccggcaaa tactgaaata ccaccgtgtt cttgtgcgat gttattgatc
     1921 agctcttgga ttaatacagt tttacctaca ccggcaccac cgaataaacc gattttacca
     1981 cctttaatgt atggtgctaa taagtcaaca actttaatac ctgtttctaa aatttctact
     2041 tctgtagaga gttcatcaaa tttaggcgct tcacgatgaa ttgggtcacg acgtacagcg
     2101 gcatcaattg gctcttctaa gtctatatgt tcacctaata cattaaatac gcgtcctaat
     2161 gtagcatcgc cgacagggac actgattgct gctcctgtat ctcttacttc cgcaccacgt
     2221 tgaacaccgt cagtagagtc cattgcgatt gtgcgtacaa catcatcgcc taagtgaagg
     2281 gcaacttcta atgttaagct ctcagtctca ccgtctcttg acacatcaat aagcagtgcg
     2341 ttgttaatgt ttggaatttc gttatgttca aaacgcacgt caattactgg ccccatgacc
     2401 tgagttacac ggcctaatcc catgtttctt cctccttata atcaaaatta ttctaacgct
     2461 gctgaaccac caacaatttc agtaatttgt tgtgtaatgg ctgcttgtcg cgctcggtta
     2521 tattgtaatg ataaatcgtc aatcatttct gttgcattat ctgaggcatt cttcattgca
     2581 ttcatacgtg acgcatgttc acttgctttt gcatcaagaa tcgtaccata aattaaactc
     2641 tcaatatatt gaggtaataa tattttcaga atggcatctt tgtctggctc aaattcataa
     2701 gtggccattg caccgtgacc taagctagag tcctctggag ataatggtaa taatttttta
     2761 ctgctaggct tattctcgat tacacttacg taatggctat agtagatgtg taattcatca
     2821 atttgttcat ctacgtataa atcgatggca cgttttccga ttgcctgaat tgttttgaat
     2881 gcaggctgat ccgggatgtc agttaacgta ttttcaagtt gatagccacg gttttgtaaa
     2941 aatgtcgcac cgatttgtcc aagtacgata atacgatact cttctggact gttatgacgt
     3001 tgttcgatat cacgaatcat tttctttaac acgttcgcgc tataagcacc cgcaagtcca
     3061 cgatcgctcg taatgaccat ataacctaca cgtttcacag gacgttcgtt caacatcgga
     3121 tgtgatgaaa ctctattcga ccctgcgatt gctgtaattg cgtctttcat tttttccata
     3181 taaggacgaa atgtcatcgc attcttctca gctttacgta atttagaact tgataccatg
     3241 ttcattgcat tcgtaatctg cttcgtcttt ttcgtcgatt ttatacgtga atcaatttct
     3301 tttaatgaag ccaccatctc accaccttat ctattttaat catctgttca attattcttc
     3361 tgaagcttta aaaccttttt tgaattcatt gattgctgat tcaaattttt cgtctgcagg
     3421 aaggccacct gtttcgcgaa tttcagtaaa gatttcgttt gcgttagatt ttgtccattc
     3481 gataatttca gcttcgaaac gcgtaatatc aacaacagga atgtcatcta aataaccacg
     3541 tgttaatgca taaataatca atacttggtg ttcaacagga agtggtttgt tttggtcttg
     3601 ttttaatact tcaaccgtac gtttaccacg ttctaatttg cttgctgttg cttcatcaag
     3661 gtcagaacca aattgcgcaa atgattcaag ttcacgatat gaagctaagt ctaaacgtaa
     3721 tgtccctgca actttcttca tcgctttaat ttgtgctgat ccccctacac gtgatactga
     3781 aagacccgca ttaatcgctg gacgaatacc agagaagaat aagtctgatt gtaagaagat
     3841 ttgaccatca gtaattgaga ttacgtttgt cggcacatat gctgagatat ccccggcttg
     3901 tgtttcaaca aatggtaatg cagtaatcga accgccacct aaatcatcat ttaatttcgc
     3961 cgcacgctct aataaacgac tatgtaagta gaatacatca cctgggtatg cttcacgacc
     4021 tggtggacga cgtaataata atgataactc acggtatgct gcagcttgtt ttgttaaatc
     4081 atcatataca attaaaacgt gcttaccatt gaacataaat tcttctgcca tcgttacacc
     4141 tgcatatggc gcgatatata acattggcgc tggttgtgct gctgatgcag atacaacgat
     4201 tgtgtaatct aatgcacccg cttgacgtaa tttttcaact gctgcacgaa cagttgattc
     4261 tttctgacca attgcgacat agatacaaat catatcttga tctttttggt ttaaaatcgt
     4321 atcaatcgct acagttgttt tacctgtttg acggtcaccg atgattaact cacgttgacc
     4381 acggccgatt ggcactaagg catcgattgc tttgatccct gtttgtaaag gttcatcaac
     4441 agatttacgc gccataacac ctgttgcttt tttctcgata ggacgtgttt ttgttgtatt
     4501 taaagggcct tgtccatcaa taggttgacc taatgagttc acaacacgac cgattagttc
     4561 ttcacctact ggcacttcca tgatacgacc cgtacgtttc acttcgtcgc cttctttaat
     4621 ttcatcataa ggacctaaaa taacaacacc cacgtttgtt tcttctaagt tttgtgccag
     4681 tccaagtacg ccgttatgga attctaataa ctcaccagcc ataacgtcgt tcaatccgtg
     4741 aactaatgca ataccgtcac caatttgaat aactgtacct acatccgtta cagacatttc
     4801 tgactcatag ttttcaattt gtgagcgaag taatgcacta atttcttcag cttttatggc
     4861 catctatgtc actcctccat ttaatctaat taatgtactc tgttaaattt cttaacgagt
     4921 tgatttaaat cattttgtac actaccgtca tatacttttg taccgatttt cacgcgtacg
     4981 ccaccgatca gttcttcgtt tacagtagaa tgaatgatta aatctttaag tcctgtacga
     5041 tctaacaatg cgtttgtcac ttgcattaat tcatcttcat ttaaagttga agctgattca
     5101 acataagcat ctgccagacc gtggaattga taatactgcg cttcaaatgc tttgaaaata
     5161 gcaggtatta aatgtaaatt acggtgtccc gcaacaattt ttaacgtatt catcaaataa
     5221 ggttgtgttc ctgcaaaaac attatctaca atatgacgtc tatccgctat tgtaattttt
     5281 ggttcataat cgatgccttt taagtaatcg atttgacttt caacagctgt attgatttct
     5341 gtaaattcat catatacctc ggataagata ttgtgtgata atgtaacatc atacagtgct
     5401 tgggcatatt tttgagcaac gttagccatt acttatcccc tacctcttta acgtacttct
     5461 ctattaaagc tttttgatct tgttcagaga tttctttacg taatactttt gatgcaatca
     5521 gtactgagag ttccgaaact tgattattaa tttctgctaa tgcacgttct ttttcactct
     5581 taatttcact ttgtgccgtt tcaagcatac cattggcacg ttgatttgct tcatgaagga
     5641 tttcttcttg ttgacgtctt gcttgtaact tggcatcttc aagaatttta tgaacttcat
     5701 cttgtgtttc tttaagtttt tgtctatttt cttcttctaa acgttgcgca ttcaattttg
     5761 cacgttctgc atcatcaatg tcttgattaa ttgaacgctc acgatcgtcc atgacttttt
     5821 taagcggtcc ccaagcaaac tttctaagta gtgcgagtaa aatgaggaaa gttactactg
     5881 ttacaataat atccccaatg ttcacgccac cacctgctgc tgcaagggta aataaattag
     5941 cagtcactat gatgtacact cctttcaacc atttcatctg ttcaaataat aaaaacgaat
     6001 ggcgaaagcc taatctgtac tagacctcgc cctgacaaat gtttttcata tgtaaaaata
     6061 agaaattaac aaatgtcttt attacgtcat gcttcctaac tgattagctt cgattaaatg
     6121 aataatacga tgaatgtgat aactacaccg atgataggaa gtgcctctac taaaccaata
     6181 ccgatgaaca taattgacat taattgtgta cgagcttctg gttgacgtgc cacaccttca
     6241 actgttctag aaacgattaa accgttacca atacctgcac ctaatgctga taaaccgatt
     6301 gcgattgctg ctgcgattaa attcattata taaatcctcc taattgtttt taaattttaa
     6361 tttttatttt aatggttgtc tgctacttta tgtgacatat acaccattga taacatgata
     6421 aagatatagg cttggattga gcctacgaaa attgaaaaac cttgccaaat aatcaatcca
     6481 ggaataccaa taataaaacc aaatgctact gttaaagtca cttttgaaag taaccctaat
     6541 aaaatctcac cggcataaat gttaccgtac agacgtagac ctaacgtcaa tgtcgatgca
     6601 aactcttcaa agacattaat aggaagtagt gccaaatacg gtttactgta gcctttaaga
     6661 taagctttag gacctcgcat tttaacacca tagtaatggg ttaaaaggac catcatcgtt
     6721 gcgagtgtca aagtcacatg tgcatcagca gttggtgact tccaccatag tgtatgaccg
     6781 ttcacaaact gcaatggaag ccctagcata ttcgccacaa aaatgaataa aattaaagtg
     6841 acggctaaga agtgaaattg tccacctttt gaccaggcca tattactttc gatgatgcca
     6901 cggacaaagt caaaaaccca ttcgatgaag ttttgtgcgc cttttggtct tttctggagg
     6961 ttgcgcgtac ataagactgc aataacaaat actatcactg ctgttactaa taacatcata
     7021 atagtagata agttgaaatt aatatctact ccgagaaaat gccaagtcac cacgggatgt
     7081 ttgtgatcca ttctagattt cacctctttt caaaatataa ttcaatcacg attccttctt
     7141 taacaaagga cgaaaaacca ttaacacata tgaaaccatc aatcctatga gcacgccgag
     7201 tatatgtatt tgcgcttgaa atagtaccca tatgacacat gccaatatag cgacgagata
     7261 gcgccaacca ttcccagttg aaataggttc tgctgagaaa cgctttgccc gccataaata
     7321 atattcaaaa atgcacgtat tcactataga tgctattatc cctacgataa gcccaagtac
     7381 aatcggttgt tgcacgtcta aagaatagag gattaatagc cctgctaaaa tcgtagcgta
     7441 atatgttaaa aacggctgaa acattttata aaaacgattc atattgagcc tcttttctgc
     7501 cttaagacac aattctgaaa gccgttccat acatacaact ttcataataa tatagggcga
     7561 aaagtgtgtc aattgcacaa ttaaaagggt caatttttat aaattgaatt gtcacatatt
     7621 tgacacattc gtccctatta aaatgtcact ttacttgtcc actcgaaatg gagcgggttt
     7681 ttgatcgatt aaaccgtaaa agtatttaat attttcacaa atacgttgtg acgcttgccc
     7741 atcaccatac ggattttgtg cgacactcat cgcttcatac aacgcttcat cagttaataa
     7801 agctttagtt gcttcgtaaa catccgcttc ttcagtaccg acgagtcgga gtgtccccgc
     7861 ttccacgcct tctggacgct ctgttgtatc tcttaatacg agcacaggct tgccgagtga
     7921 aggtgcttct tcttgtacac cacctgaatc tgtcaaaata aagtgcgctt gatgtgcaaa
     7981 gttatgaaaa tcaacaactt cgagtggttc aattaattca atacgttcat gattacttaa
     8041 atgtttataa gcaatttcac gtactttagg atttttatgc attgggtaga cgatgaccgc
     8101 atcttcaaat tcctcaacaa tgcgtctagc cgctttaaaa atatgatgca taggttcacc
     8161 aatattttcg cgacggtgcg cagtgagtaa gataatacgc ttatcttgat gacgttgaat
     8221 gatgtctgat tggtattgtg gatcgacagt cgtatgcata gcgtcaatcg ctgtgttacc
     8281 cgttacaaca accttttcag ggtctttgtt ttcttgcaat aagtttgctt gtgcctgttc
     8341 agtcggtgca aaatgtaaat cagccataat accggtcatt tgacgattca tttcttctgg
     8401 gaatggagaa tacttattcc aagttcgtaa cccggcttca acgtggccaa tgctaatctc
     8461 gttgtaaaat gcagcgagac ttcctgcaaa agttgttgtc gtatctccat ggaccaatat
     8521 catatctggt tgtgcctttt tgatgacatc ttctaacccg agtaacacgc gtgatgtcac
     8581 ttctgataac gtctgcccct gtttcatcac gtttaaatca taatcaggtt caattccaaa
     8641 cgtatctaat acagaatcta acatttcacg gtgttgtgca gtgaccacga ctatcggttc
     8701 taatgcttca tcttttttga gctgtaaaac gagcggtgcc attttaatcg cttcaggcct
     8761 tgtaccaaaa atcgtcatta tccttttcat gtcaatgcgc tccttgtatg aattattttg
     8821 taccgaatag acggtctcca gcatcgccga gaccagggat gatataagca ttgtcatcta
     8881 acttttcatc caatgcggca ataaaaatat ccacatcttc atgtgctgct tgaagttttt
     8941 ccacgccttc tggagcggca attaaacaca taaagcgaat atgtttcgcg cctcgctttt
     9001 tcaatgagtt aattgcttcg atcgctgatg cacccgttgc aagcattggg tcgactacga
     9061 tgatttcgcg ttcttcaata tcttgtggta gtttcacaaa atattcgatc gcttcaagtg
     9121 tttcagggtc acgatataaa cctacatgac ctattcttgc tgcagggaca aggtttaaaa
     9181 tacctgttgt cataccaaga cccgcgcgta aaattggaac aaaagcgagc tttttacctg
     9241 ataagcgttt cgcaatcgct ttcgtaacag gtgtttcgat ttcaacctct tgaagctcta
     9301 aatcacgtgt cacttcataa gccattaaca tgcctacttc atcaactaat tcacgaaatg
     9361 cttttgtacc agtattcaca tctcgaataa agcttaactt atgttggatt aaagggtgat
     9421 caaatacatg tactttaccc atgatattgc ctccgtttgt tctaaaataa ttggtttatt
     9481 gatataaagg gaatttttca gtcaacgctt gaacacgtga cttcgcatct gctaaaactt
     9541 tctggtcttc atggttttta agaacgtcgc ttataatacg accaacctct tcaaaagcat
     9601 tttcatcaaa accacgtgtt gttgcagctg gagtacctaa acggataccg cttgtaacaa
     9661 aaggtttttc ttgatcgaat ggaatcgtat ttttgttaca tgtgatacca atttcatcaa
     9721 gtgcctcttc tgctacttta cctgtaatgc ctacggaacc tttaacatct actgatacaa
     9781 gatggttatc tgtaccacca gatacaattc taaagccatt atcttttaaa gtttttgcaa
     9841 gcatttgcgc atttttaatc acttgttgtt gatacgtttt aaattctggt tgtaatgctt
     9901 ctccaaatgc aacagctttc gcagcgatca catgctcaag tggaccacct tgaatgccag
     9961 ggaaaattgt tttatcaatc tcttttttat attcttcttt gcataaaatc ataccgccac
    10021 gaggaccacg taacgtttta tgcgttgttg ttgtaacgaa atccgcaaat tcaactgggt
    10081 tttggtgaag acccgctgca acaagccctg caatatgcgc catatctacc attaacttcg
    10141 caccaacttc atcagcaatt tctttaaatt tcttgaagtc gattgaacgt gaataagcag
    10201 atgcacccgc tacgattaat ttaggcttgt gttcttttgc taacttacga acttcttcat
    10261 agtcaatatg ctcttcgtct ttagttacac catattccac aaagttgtag aacttaccac
    10321 taaaattaac tggtgaaccg tgcgttaagt gaccgccatg acttaaattc ataccgagta
    10381 ctgtgtcacc atgttcaagt gcaacaagat atacagccat attcgcttgt gaaccagaat
    10441 gcggttggac attgacatgt tcagcattga aaagtgcttt tgctctatca attgcaagct
    10501 gttccgtttg gtctacaaat acgcatcccc catagtaacg gcgtccagga taaccttcag
    10561 catatttatt cgtcatgact gaaccttgtg cttccatgac tgcttcagaa acaaagttct
    10621 cagatgcaat taactcaatg cttgtgtttt gacgatgaaa ctctttttga atactttcaa
    10681 atacagactt atcttgttta gcaagaaatg acatagacaa ttccctcttt tctgttaaag
    10741 ttgatattta gcacgttcgc ccccgatttt tttcggtcga gatgttgcta cagtcacaat
    10801 tgcttggcca acttgtttca ctgtagtccg aacaggtact gccacatgct tcagatgcat
    10861 accaatcaat gtttgaccga tatcaatacc tttgtcagct cgaatatgtt cgactaccat
    10921 gggtgcttcc atatgacgat acgcatgcgt tgataaagaa cccccagcat gcacatctgg
    10981 aacgacagag acttcagtca tcacgtatgg atcaaagtct ttacgttcaa tagtaatggc
    11041 acgattgata tgttcacaac cttgaaatgc aaatgaaaca cctgtctcct gttgaatctt
    11101 aacaagtgct tcgaaaattt cctgagcgac atctatcgag ccagtcgtcc ctatacgctc
    11161 cccttgaact tcagaagtcg aacaacctat gacacatatc tcaccttcat taaaaaacga
    11221 ttgggcttta agttcttcta ataattgatt taaatcctgc ataccgttac ccccttgttc
    11281 atcggatgag tcaaaaaaac aataatgaaa ggactacgaa acatgctata cgtcctttat
    11341 tataacttat tttttcttta acttatactg attatacaat tattctgtca ctaatttaga
    11401 ctttaacttg tcgatcatcc gtgtcaactg ttcaaagact tgttcatacg tttcatactg
    11461 cccgccataa ggatcttcta ctggcaaatc ttcatccaca taatcgttta atgcatacac
    11521 attcacttgc gggccataca tcgcttgaat catttggcga tgtgcagtcg tcatcgttaa
    11581 aatcaaatcc gcttcagcat cccctgcatc aaacaattgt gcacccttcg gtatcggtaa
    11641 ttcatgacgt cgtaataatt cgcgactatg tgacgatatc ggttgccctt cttgtgccat
    11701 cagccctctt gaaacaattt caaagtctgg cattaattgt ttcgcaatac tttcggctaa
    11761 tggactacga cacgtgttgc ccgtacatac aaatacgatt ttcataacga ctcatccttt
    11821 acgacttgtt gactgaccgc tttaagcatc cgatttctca acgcttcagt gtcaaagtta
    11881 tcttcaaatc cataaatgta tgccatgtcg acatcattga gttggtccag ttgatgtaac
    11941 acgtcatata gattatggtt tgcaccttga atatcggatt cactttcact tatgacaatg
    12001 acttgcgcac ttgctggcaa aaactttttc ttcgtttcag ggacgataaa tgcgattttc
    12061 gaccagtctt catgtgcgtc ttcgtgaatc ggtgcattga gttgcgttat cattttaaga
    12121 ggcgttgacg gcgcataatg acgatatttc atccctggcg caatcggttt ttcagtagct
    12181 agtggactgt gaacttcgac agattgtggt aaaatatcat tcaacatgtt gcgcgttatc
    12241 gtaccaggtc gcgcaatgcg aaatggaaat gatgtacaat ctacaactgt actttcaagt
    12301 cctgcatcac tttgcgtcga tcgcatgatg ccctccaccc gatgattcaa atcatgaaac
    12361 gcatgttcaa acgttgttgg ggaaggtcgt ccacttaaat ttgcactcgg tgctgcaatc
    12421 ggcaaatcga ctgcttttaa taatgctaat gctacagggt gactcggcat acgcactgcc
    12481 acagaattca atccacctgt cacccgatca cataaaaatc cttgttttaa cggtaatata
    12541 aaggtaatcg gccccggcca aaaagcttcc attaacttac gtgtcgactc cgaaatatct
    12601 gctacaaaat cgtcaagctg atccgtatca tgaatgtgca caattaaagg gttatcggaa
    12661 ggacgccctt ttgcttcata aattttacga atggccgtat cgtctttcgc atttccacct
    12721 aaaccgtaca ctgtttctgt cggtagcacg acaagaccgc catcttgtaa agtttttaca
    12781 atttctggta attttggata ttcttctaat cgtgttgtat aatctcgaac atcccaaatt
    12841 ttcgtttctg acattaacgt ccacctctcc ttctcttcta ttttactaca aaaataaaaa
    12901 tgggtgcatg acttcaatcg taagaatacg tcttagattt tactgtcgtg catccatttt
    12961 taattgctgt tatattgacg ctcattcgcg aaattttcat tgcttcacag acaaagcgac
    13021 tatggctgag tccatttaaa atgaaaaatt cgtgcatgac cgttgatgtc gtttatgact
    13081 tctggcgtaa tatgcggata caactgttgc atcatgcgcg ttaactgtgc accttgttga
    13141 aagccaattt caaagacaac cggcgcaccg tcttgcatga catgaggcaa atcacgtaat
    13201 atcgctgcat aaacttgata gccttcttgg gctgcaaaaa gagccacatg cggttcatat
    13261 tgaatcacac tgttatccat taatgtgcgt tcatgctcac caatgtaggg tggattagaa
    13321 attaaaccgt ccaatcgaac gtcctgatca atcaatggtt gtaacgcatt tccttgtaaa
    13381 aaggtgatgt ctcgttgcag gcgctgagca ttttctcgtg cgaccgctaa cgcttgaaat
    13441 gaaatatctg tcgcaataac acgcaattca ggtcgttcag cttttaaagt gatggcaatc
    13501 gcaccacttc ccacaccaat gtcagcaaca actttagcag ctgccaactg tgttaaaaaa
    13561 taatgcacca cttcttctgt ctcgggtcta ggaatgagga catccgaatt cactttaaat
    13621 tggcgaccgt aaaattccga ttgaccgaca acgtattgca ctggcatccc cgtgagcagt
    13681 tgtgataaac cgtcattcaa ttgtttaagc gttgattcag ctattggcgt catttcattc
    13741 aaaatgagtg aagttctcga ccattgcaac gtatccatca taaaccattg gatggcattc
    13801 ggctcatatc ctttcaccac catttgctgc tcagcctgtt gtcgccactc tttataattc
    13861 accagtatta agctctttca atttttcagt ttgttcatgc atcgttaacg catccacaat
    13921 ttcgtctaac ttgccttcca taatttgatc taatttttgt aatgttaaac caatacggtg
    13981 gtccgtcaca cgactttgcg gatagttata tgtacggata cgttcagaac ggtcacctgt
    14041 acccaccgct gacttacgtt gcgctgcata tttttgttgt tcttcttgca acttcatatc
    14101 atataaacgt gcttttaaca ctttcatcgc tttttcacgg ttttgaattt gcgatttttc
    14161 tgaagatgtc gcaatgaccc cagttggaat gtgagtaata cgtacggcag agtccgttgt
    14221 attaacgtgc tgtccacctg caccacttga acgatacgta tcgattttca agtcttcgtt
    14281 gcggatttcg atttctacat cttctacttc tggtaggact gcaactgtgg ctgttgacgt
    14341 atgaatacgg ccacctgatt ctgtttcagg aacacgttga acacggtgcg caccattttc
    14401 atatttcaat ttactgtaag caccgtcgcc agaaactgaa aaactgatct ctttataacc
    14461 accgtggtca ctttctgtcg cttctacaat ttcaagttta aaacgatgtg actcagcgaa
    14521 cttagaatac atacggaata aatcaccagc aaaaatagcc gcttcatcgc cacctgcagc
    14581 cccacgaatt tccacaataa catctttttc gtcattcgga tcttttggaa tgagcaataa
    14641 ttttaactgc tcttctagtt ctggcacttc tgctttcaat gcacttgctt cttcttttaa
    14701 catttccact tcatcagcgt catctgtttc agcaagcatt aattcaattt cctcagcatc
    14761 ttctttcact tgtttatatt gacggtacac ttctaccgtt ttttgtaatt ctgattgttc
    14821 tttagaatat tttctaagaa gatttgaatc actcacaact tctggatcgc ttaacaattc
    14881 attcagttgt tcataacgtt cttcaacaat gtctaattga tcaaacatta ttccaacgcc
    14941 tccttatcat tttcactcgg tgctacgata tgatgtgcac gacaacgcgg ctcataactt
    15001 tcatttgcac ctacaagtat aatcggatca tccacttttg caggtttacc atcaatcaat
    15061 cgttgcgtac gactcgatga tgccccacaa accgcacaga ccgcttgtaa ttttgtaata
    15121 tgttcactca ccgctagcat ttcaggaaca gggtgaaaag gttcgccttt aaaatccata
    15181 tcaagacctg cagtaattac acggtaccct ctttcggcaa gcgtttgtgc aatgtctaca
    15241 atatctcgat caaaaaattg aatctcatca ataccgataa tatccacacc atttaagtca
    15301 tggcgccata tctcacttgc tttagaaatg ttaatcgctt ctatttcatt accgttatga
    15361 gaaacaattt tttctttatg gtagcggtca tcaattgttg gtttaaatac aaccactttt
    15421 tgctttgcat agacacctcg gcgtaagcgt ctgatgagct cttctgactt gccactaaac
    15481 atgcttccag taatgcattc tatccaacct gaatggtacg cttcatacat gattctttcc
    15541 acctttttca aaacaaaatc aattcattat atcataaaat atacgtattc gttgatgtaa
    15601 ttcgtatgta tatcaaaatt cattaaattc ttgtttattt gatttaaaat ccccctttaa
    15661 actttcagaa tgtgataaat gaggtaaagc cctagcaaag cagataataa aaaagtgggt
    15721 acacaatcta aaggtttaga ttccgttgac ccactacaac gcacaacacg tttccttatg
    15781 atacagtatc aaagaaaacg tgttgacgta cattttattc acatttcatt aagcacacag
    15841 tttgagagga cagctatcca cccaagccaa tgttgtctta gttgtctgat ttgagaccaa
    15901 attttttgtt gaaacgttcc acacgaccat ctgccgcagc aaatttttga cgtcctgtgt
    15961 agaatggatg tgaatcagaa gaaatatcta aacgaataac tgggtactcg ttaccatctt
    16021 cccattccat tgtttcgtta gaaaatttag tagaaccgct taaaaatttg taatcagttg
    16081 tcgtatctaa aaagatgact ttacggtatt ctggatgaat cccttgtttc ataattttca
    16141 gctcctttgc cctgaaccat ccggaacaga gttatttctg agtttttacc caatacttaa
    16201 acattatata ggccgcatga tgaaattgca accctacatc taaaattatt ctgattaaat
    16261 aatcggttta cctgttttac tactttcagc cgcactttgt tgtaaaagtt caaagaattc
    16321 agcattggat ttcgttttct tcaacttacg aatgaaacgc tctgtgaagt caggtgaatt
    16381 tgaaaacata ttgcgtaatt gccacaagct atccaattcg tttttcggaa caaggagttc
    16441 ttctttacgc gtcgaacttc tagaaatatc aatcgctgga taaatacgac gttcagaaag
    16501 gcgtcgatct aaatggagct ccatattccc tgtcccttta aattcctcat aaatcatatc
    16561 atccatacga gaacctgtat caacgagcgt agtggctaaa attgttaaac tgccacctgc
    16621 ttcgatattt ctggcagcac caaaaaatgt tttaggacca tgtaatgacg ctggatctaa
    16681 accacccgat aatgtacgac cactcggcgg tacaacgagg ttatacgcac gggctaaacg
    16741 agtcagtgaa tccattaaaa taatgacatc ttcaccaatt tcgacgagac gctttgcacg
    16801 ctcgagcaac aattcagcaa cttttacgtg atgttttgga tgctcatcaa acgtagaatg
    16861 tactacttct gcttcatcaa ctgaacgttc aatgtcagtt acctcttctg gtcgttcacc
    16921 gatgagtaaa atgaaaagtt tagcattcgg tttgttcgta acaatcgcat tggcaatttc
    16981 ttttagtaaa gtggttttcc ctgctttagg tggtgcaaca attaagccgc gttgtcctaa
    17041 accaataggt gtaattaagt ccattacacg tgttgaatag tttcgaggtt ctgtttctaa
    17101 tttaatccgt tcatctggat ataaaggtgt aagagcttgg aagtgagggc gttttttgac
    17161 ttcttctgca ttgtgatcgt tcacaaagtc aacttgtagt aatccataat atttttcgtt
    17221 ttctttcggt tttcgaactt ttccggttac tttatcgcct aatttaattt cgaatcgacg
    17281 aatttggcta gcagaaatgt agatatcttt ttcacctttg gagaagttaa ccgttcgtaa
    17341 aaacccataa ccatcttgtt ggatatcatc gaggatgcct tccatatagt agtttccatc
    17401 ttgttccatt tgcgcttcca tgattgcaag
//
LOCUS       DANHOL010000041        17139 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.041, whole genome shotgun sequence.
ACCESSION   DANHOL010000041 DANHOL010000000
VERSION     DANHOL010000041.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 17139)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17139)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17139
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.041"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            318..1112
                     /locus_tag="PTC08_000996"
     CDS             318..1112
                     /locus_tag="PTC08_000996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase family protein"
                     /protein_id="HDK5682510.1"
                     /translation="MLSESERHKIDQHLQQWIQQMTEEIPNLIHQIQTDTKSSRYDLV
                     TNVDQTIESRFEQFLKTYYPHHRLYGEEAHHETQHLKEGHTWLIDPIDGTANLVKQQD
                     DFCMIIGYFVEGEPQLSYIYDYPRQKLYRAVKGSGAFLNDKPLLPITSQPLKDQIISF
                     NNRVLNDETIHDLLDVSFGYRLIGACGLDSARVITGQFGAHIHTNAKPWDIAAQFLFA
                     QELGLKMTDFHQQPIDFVRGGPFIISNPGCYETILDILLSNGGYQK"
     gene            1240..2193
                     /locus_tag="PTC08_000997"
     CDS             1240..2193
                     /locus_tag="PTC08_000997"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LCP family protein"
                     /protein_id="HDK5682511.1"
                     /translation="MEYKRTQKRKNPVLRFLLWFVGILFILAVIAVAYLAFKIFAVGG
                     AIHNPLDRNHSELRSGKVDLSKGEPFSIALFGIDSDAQRESAGGGERSDTIMILSVNP
                     EKKTTEMISIPRDTQAEIVGRDTTEKINHAYAYGGPDMAVKSIEKLMGVPIDHYATVN
                     MDGLKDTIDTVGGIDVTSNATFNAGGHQFTKGQRTHLDGDTAMSFIRSRKEEGAGGDF
                     GRQERQQLVLQGLADKLTGISSLTNFNALMNQLSDNVKTDLTIGELNQIRSNYSDAND
                     HVKRHQLDGSGGIQSDGLYYFIPDETQKQSLVQQYKQNLNL"
     gene            2423..3130
                     /locus_tag="PTC08_000998"
     CDS             2423..3130
                     /locus_tag="PTC08_000998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF969 domain-containing protein"
                     /protein_id="HDK5682512.1"
                     /translation="MEWLKLIGILIIVLGFYFKWDTIGTVLIAAIVTGLVSHMDVMTI
                     LETLGKAFVDNRMVSLFILTLPMVGMIERFGLKTQATRLINRIQGITSGRIMSVYLFI
                     REVAGLASIRIGGHPQFVRPLMNPMVQAAAKAKYKQKIEPVDEEKLKAHIAAMENYGN
                     FFGQNLFVGASGVLLIVATFHSLHMEVKAVEIALYSAPIAIVVLIVGVIQNVLFDRKM
                     NRKYGEKGGTQDESSND"
     gene            3111..4037
                     /locus_tag="PTC08_000999"
     CDS             3111..4037
                     /locus_tag="PTC08_000999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF979 domain-containing protein"
                     /protein_id="HDK5682513.1"
                     /translation="MSHQMISQILEIFYVLIGLQFVYTAYRVYREPSNMKRIGTAMFW
                     CILGLLFMVGPYFPNWLNGLLVLLMGFLTITKNVTIGKVVGVEHQEEEQGATRFGNLL
                     FIPAVVLAIVAVIVSTWTPLGGAIGISISSIVGLIVAYLIIRPKAKVGLYDSDRLVQQ
                     IGTVGILPQFLAALGILFTVSGVGTTISKGISSFLPQDNALLGVIAYILGMVLFTMLM
                     GNAFAAFTVITASIGLPFVIQNGGDPTIVGALAMTGGFCGTLLTPMAANFNTLPVALL
                     EMKDELAVIKAQAPMAIMLIVVHIILMYILAF"
     gene            4062..4703
                     /gene="pcp"
                     /locus_tag="PTC08_001000"
     CDS             4062..4703
                     /gene="pcp"
                     /locus_tag="PTC08_001000"
                     /EC_number="3.4.19.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyroglutamyl-peptidase I"
                     /protein_id="HDK5682514.1"
                     /translation="MKVLVTAFDPFAGEKVNPALQAVQRLPDTIEGHVIDKLEIPTVF
                     YQSIEVVREKLAETEYDIVLAIGQAGGRYEITPERVAINVDDARIPDNDGQQPIDQRI
                     QQDGPPAYFTPLPVKRMVEAMQAEGVPASLSNSAGTFVCNHIMYQLAYEAERYYPKLK
                     TGFIHVPFAPAQVIDKPGKPSMSIEMMVKGLTAAIRVCLNYDTDVATVHGTTH"
     gene            4900..7836
                     /gene="fdhF"
                     /locus_tag="PTC08_001001"
     CDS             4900..7836
                     /gene="fdhF"
                     /locus_tag="PTC08_001001"
                     /EC_number="1.17.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase subunit alpha"
                     /protein_id="HDK5682515.1"
                     /translation="MQEHLIVTLDGKDYLVEPGKNLLEFIKEQQTFVPSICYNESLGP
                     IQTCDTCAVEIDGKIERACGTTVQRSMVVNTTTQPVQDSQKEALDRILEKHQLYCTVC
                     DYNNGNCEIHNTMDQWGLEHQTYEYKPKPYEVDFGPFYRYDPNQCILCGRCVEVCQDV
                     QVNETLSIDWDREHPRVIWDNDVSINDSSCVGCGQCATVCPCNAMMENNMVGNAGYMT
                     DIEPGSLASMIDLTKKAETGYGPLFAVSDSEAAMREERIKKTKTVCTYCGVGCSFEIW
                     TKDREILKVQPSHDSPANKISSCVKGKFGWDYVNSEERLTKPLIRRGDQFEEVEWDEA
                     IKHVATRMQEIKAQYGPDALSFISSSKATNEESYLMQKLARQVIGTNNIDNCSRYCQA
                     PATKGLFRTVGHGGDSGSIEDIGKAEMVITIGTNTAEAHPVIASRIKRSHKLFGTKLH
                     VFDIRKHEMAQRADEFYQPYPGTDLVWLSAVTKYIIDQGWHAQSFIDEWVDHFDEYYQ
                     SLEPYTMDFAEEHTGISKERLIHLAKEIVSVNSVSICWAMGVTQQETGSDTSTAISNL
                     LLATGNYMKPGAGSYPLRGHNNVQGCSDFGSMPDKFPGYQGVEDDEARGRYEASWGVK
                     LPSHPGYDNHQMMDHIHAGDVHSLFILGEDTGIVDSNINYVQAALEKVDFLVVQDEFL
                     TFTAEYADVILPASPSLEKDGTFTNTERRFQRLYQVLEPLGDSKPDWQITQMIAKELG
                     FDWGYKHPAEIMDEASDLTPMFAGVKYHRLEGYNSLQWPVAADGTDSPLLFTERFNFD
                     NGKAKFFALDFNNFYKTNETYDLHVNNGRVLEHFHEGNMTYKVPGLKYKMPTAFVEVS
                     PELAKERGIHEGAAVKLISEHGEATMHVHITDRVSGKQIYLPLNDNSAAAINYLTSSV
                     TDPETHTPAYKSTSCRMEILSKRGKSPLNPTNFRNQTRNPQYSVRVDKKWARSDYVFP
                     GDQVMK"
     gene            7836..8303
                     /locus_tag="PTC08_001002"
     CDS             7836..8303
                     /locus_tag="PTC08_001002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1641 domain-containing protein"
                     /protein_id="HDK5682516.1"
                     /translation="MAERIRKIKRLEKSEAAIKAESLSQVTDAIVENKDSILKAIDLI
                     RTLDEAKILDALNGAVKQRGVITEKITAELNKDQYTGVIHNMGQMLFLLGDLQTDELR
                     VLLNKVNRGIRVANQASPHARTSVTGLMRVLKDDEMNQSLTYFLNLLKGMSRD"
     gene            9058..9300
                     /locus_tag="PTC08_001003"
     CDS             9058..9300
                     /locus_tag="PTC08_001003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682517.1"
                     /translation="MDTKKIKILGIVSNVFLILGLILLVFVSAWIALVCFLISLGLSL
                     VLFNMLFHGKRAVKIIVNIAYFVVLCAVGVMIYMSR"
     gene            9328..10107
                     /locus_tag="PTC08_001004"
     CDS             9328..10107
                     /locus_tag="PTC08_001004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylglucosaminidase"
                     /protein_id="HDK5682518.1"
                     /translation="MNRSRKVKPLKAIIIVLFVLFVVLFVVNETSLFKNDKTHTFDEA
                     FAKQMQGDALHTKSKGNQFVNASKQDIKAAMTVDHKDSDLMYMDLSEPIEMSEDEVND
                     MLKGNGILEGHGKAFLEAQKENDVNVIYLVSHAQLETGEGRSALAKGLRKGDARYYNF
                     FGIGAFDRKAVKTGASYAQKAGWTSPDKAIKGGASFVRTQYFENGQLNLYQMRWNPQS
                     PATNQYASDIDWPAKIAARMEVYYQKYGIKKDDIRKDFYKK"
     gene            10127..11254
                     /locus_tag="PTC08_001005"
     CDS             10127..11254
                     /locus_tag="PTC08_001005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent monooxygenase"
                     /protein_id="HDK5682519.1"
                     /translation="MKIGIVGAGIGGLTAAIMLRAQGHDISIYEKQDTISEVGAGIGI
                     GDNVIQMLGEHDLAKGIKNAGQVLTAMRIFDEQGHILNTLPLSDKNTNVTLERQTLVD
                     LLKSYLDDELFHFNHKVTHVESNGTTGTIHFKEQSAVQVDMIIGADGIRSQVRQSVQP
                     KSKVQYQGYTCFRGIVDDMDMLKPIADEYWGQKGRFGIVPLLDGRAYWFATMNAKEND
                     MHFKKFNKPYLQAYFNHFPEPVRKVLDLQAETAILHHDIYDLKSLSTFVYEKNIVLLG
                     DAAHATTPNMGQGAGQSMEDAIVLSNVLKKYDTLESALKRYNRLRVKHTRQITKRSRQ
                     IGKVAQKTNGLSIKMRNRFMRLLPTWVMKRQTQLLYRTKSE"
     gene            complement(11449..12411)
                     /locus_tag="PTC08_001006"
     CDS             complement(11449..12411)
                     /locus_tag="PTC08_001006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-hydroxyacid dehydrogenase family protein"
                     /protein_id="HDK5682520.1"
                     /translation="MKKVFIAGPIPEKGLEILKAHFEVEMYEGEGIIDKETLKTGVKD
                     AFGLVSLLSTEVDQEVIDSGSNLQFIANYGAGFNNVDVDYARSKNIDVSNTPKASTNS
                     TAELTMAILLAAARRVAEGDRLMRNEGFNGWAPLFFRGREVSGKKLGIIGLGEIGTAV
                     ARRAKGFDMDILYTGPHQKPDKERELGAKYLDLDTLLQTADFVAINAAYQPSMRHMID
                     TPQLEMMKPTSYLINASRGPIVHEAALLEALQNKTIEGAALDVYEFEPKITEGLKSLD
                     NVVITPHIGNATFEARDMMAEIVANNLVKKANGETPDFIVNLPK"
     gene            complement(12475..12789)
                     /locus_tag="PTC08_001007"
     CDS             complement(12475..12789)
                     /locus_tag="PTC08_001007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="QacE family quaternary ammonium compound efflux
                     SMR transporter"
                     /protein_id="HDK5682521.1"
                     /translation="MSWFALLLAGLFEVLGVLWLNEYARQHQKRFIVLLAITFALSLA
                     SLSWAMADIPMGTAYAIWTGIGTAGGTILGMVVYHESKQFIRIFFIFLIIISAVGLKL
                     VV"
     gene            complement(12786..13112)
                     /locus_tag="PTC08_001008"
     CDS             complement(12786..13112)
                     /locus_tag="PTC08_001008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HDK5682522.1"
                     /translation="MQWTKVIFAGLMEVVWVIGLTHSHLLYQWILTIALISLSFWMMV
                     SASRILPVGTVYAVFVGIGTLGTVIVGMLFFNESVSFIKLCFILTLLIGVIGLKLTTD
                     QAGEQQ"
     gene            complement(13429..14007)
                     /locus_tag="PTC08_001009"
     CDS             complement(13429..14007)
                     /locus_tag="PTC08_001009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHAP domain-containing protein"
                     /protein_id="HDK5682523.1"
                     /translation="MLKKFATTTTLTAGLGAAAAVGLQHDNADAAEGNYSYSYSYNYG
                     YNTNAQGNTNYNYNANSNQTYTYGQNTTSISTSTQSTGVTSAGNLYTPGQCTWYVYDK
                     VGGEIGSTWGNANNWASSASAAGFTVDNNPEEGSILQSNAGPMGHVAYVESVNEDGSI
                     TVSEMNYDGGPFNISTRTISASEASSYNYIHV"
     gene            14678..15754
                     /locus_tag="PTC08_001010"
     CDS             14678..15754
                     /locus_tag="PTC08_001010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD/NADP octopine/nopaline dehydrogenase family
                     protein"
                     /protein_id="HDK5682524.1"
                     /translation="MKIAIVGSGNGAVTAAVDMMNQGHHVKLYCRNQSISKFDYAIEQ
                     GGFNFNNEGTESFVPFTNISDDMGYVLEGAEIVMLCIPSSFIEYYAELMSSHINNDQI
                     IFFNMAAAMGSARFIKVLEEYKIETRPIFAEANTLTYGTRVNFETASVDLSLNVRKVY
                     FSTLNEKDLTKTFKKVESLYPYIVKEESLWRTNLENGNPEVHPGPTLLNVGRIDYSGD
                     FALYKEGITNHTVRLLHAVEVERLTLGRKLGFELETAKEARIARGYLEREMEDEPLNK
                     LFNHSPVFSRIPGPNKVNNRYLTEDIAYGLVLWSSLGREIGVPTPNIDAIIVIASTIL
                     ERDFFNEGLTIEYLGRENVGLASY"
     gene            15780..>17139
                     /gene="nhaC"
                     /locus_tag="PTC08_001011"
     CDS             15780..>17139
                     /gene="nhaC"
                     /locus_tag="PTC08_001011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaC"
                     /protein_id="HDK5682525.1"
                     /translation="MKRKPTLLESLSTIFVMMIVVCVGFIFFEIPVQPLLIISAAYAS
                     WIAWRVGLRWKDLEEGITDRLATAMPAIFIILTVGMIVGSWMYSGTVPALIYYGLKFL
                     SPSYFLISAFLISAITSVATGTAWGSASTAGIALMAIGLHMDIPAGMAAGAIISGAVF
                     GDKMSPLSDTTNLASLVTRVNIFSHIKHMIWTTVPASMIGLIVWHIASRRFSVQTNTE
                     QIDALLKDIATMYDINFFIWLPLIVIVVCLLAKISTVPSMLISSVVAIFVGWLNNGFQ
                     LKNGFIATFSGFTPKMLLGQEGLSQKALSLIEQGGMMSMTQVLVTIFCGYAFAGIVEK
                     AGCLDVILHSISKNINSRGQLILVTVIGSLMMVLAAGVASVVIIMVGVLLMQMYDKMD
                     LDRVNLSRTLEDSGTMIIPLIPWGTSGIYYTQQLGVGVGQFFIWAVPCYLCVFFALFY
                     GFT"
BASE COUNT         5330 a         2942 c         3679 g         5188 t
ORIGIN      
        1 gcttacattt atgttagaaa tatgttatag tgtagttagc tactaggggg atggtacaag
       61 aaatgttcaa ataaaggggg agctatcact attgatagta atgtttgaat ggtatattgt
      121 actaattcta gtttaacatc ttcaatattt attacttact ttcctttcta tgccggttgg
      181 ttcacgccaa ccggtttttt cgcgtatcaa tcagatgttg tatgccatga tgatttcaat
      241 acgtatcttt tgaagaaccc ccaaaaactc tttttcttct gtataatgga actaacatag
      301 ataaagaggt gatacatatg ttatctgaat cagagcgtca taaaatagat caacatctcc
      361 aacaatggat tcaacagatg acagaagaaa tccctaatct gattcatcaa attcaaaccg
      421 acacgaaatc cagtcgttac gatcttgtaa cgaatgttga tcaaacgatc gaatcaagat
      481 ttgaacaatt tttaaaaacg tattatccac accaccgctt gtatggagaa gaagcacatc
      541 atgaaacgca gcatttaaaa gagggacata cgtggttgat tgatccgata gatgggacag
      601 caaatttagt caaacaacaa gatgactttt gcatgattat aggctatttt gttgaagggg
      661 agccacaact ttcctatatc tatgattatc caagacaaaa actgtatcgc gctgtgaaag
      721 gaagcggtgc atttttaaat gacaagccgt tgcttcccat tacttcacaa ccgttgaaag
      781 atcagattat ttcatttaac aatcgtgtat tgaatgatga aacgatccat gacttattag
      841 atgtatcatt tggctatcgt ttaatcggtg cttgtggcct tgattcagca cgtgtaatta
      901 cagggcagtt cggtgcacat attcatacga atgcgaaacc ttgggacatc gccgctcaat
      961 ttttatttgc acaagaactt ggtttaaaga tgacagactt ccaccaacag cccatcgatt
     1021 ttgttcgtgg tggtccattt attattagta atccagggtg ttacgaaaca attttagaca
     1081 tattgttatc taatggtgga tatcaaaagt agacttgcgt ctaaagaccg atttcgttcg
     1141 ataaacttta ctgtaaaata acacttaata tgtgacggga tcatattttc atgtatctcc
     1201 ataaagcttg accaatacat tcggaaagaa gtgactttgt tggagtataa aagaacgcaa
     1261 aaacgtaaaa acccagtatt aagattttta ttatggtttg taggtatttt attcatttta
     1321 gccgttattg ctgtagctta tctggcattt aaaatttttg cagtaggggg ggccattcat
     1381 aatcctttag atagaaatca ttcagaattg agatcaggta aggtggattt gagtaaggga
     1441 gaaccttttt ctattgcatt atttggtata gattcagatg cgcaacgtga aagtgcggga
     1501 ggcggtgaac gaagcgatac cattatgatt ttatcagtga atccagaaaa gaaaacgaca
     1561 gaaatgatca gtattcctcg tgatacacaa gcggaaatcg ttggacgtga tacaacagaa
     1621 aaaatcaacc acgcctatgc ctatggtgga ccagatatgg cagtgaaatc tattgaaaaa
     1681 ttaatgggtg tgccaatcga tcattatgca acagttaata tggatggttt gaaagataca
     1741 atcgatacgg tcggcggcat cgatgtgaca agtaatgcga catttaatgc aggggggcat
     1801 caattcacta aaggtcaacg tacgcatctt gatggtgata ccgccatgtc atttattcga
     1861 agccgtaaag aagaaggggc aggtggagat ttcggtagac aagaaagaca acaactggtg
     1921 cttcaaggtt tagctgacaa gttaacaggt atttcttcgc ttacgaattt taatgccttg
     1981 atgaaccaat tgagtgacaa cgtaaagaca gatttaacga ttggtgaact gaaccaaatt
     2041 cgtagtaact acagtgatgc taatgatcat gttaagcgtc atcaattaga cggttctggt
     2101 ggtattcaaa gcgatggcct ttattacttc attcccgacg aaacacaaaa gcaatcacta
     2161 gtacagcagt ataagcaaaa tttaaactta taaatgtact gttgatttga aagcagcctt
     2221 tgaaccatca cccatacaat tgaatcgcgg agtggagttc aataggttca attattaata
     2281 tgccttgcaa tgtataacgt taactgcgta cacattgtag ggcattttta attctttagg
     2341 gagatagctt tccgatgctt atttgaaaca atattcagat aacgataaaa taaagtgact
     2401 atctacataa aggaggaatt tgatggaatg gcttaaactg ataggcatcc tcatcatcgt
     2461 tttaggtttt tattttaaat gggacacgat tggtacagta cttattgcag caattgtgac
     2521 tggccttgtt tctcatatgg atgtgatgac gattctagaa acacttggta aagcatttgt
     2581 ggataatcgg atggtgtcat tatttatttt aacgttgcct atggtcggga tgattgaaag
     2641 gtttggttta aaaacacaag cgacacggtt aatcaatcgt atccaaggca tcacttcggg
     2701 gcggatcatg tccgtttact tattcattcg cgaagttgcg ggccttgctt caattcgaat
     2761 tggtggacat ccacaatttg tacgtccgct catgaatcca atggtccaag cagcggcgaa
     2821 agcgaaatat aaacaaaaaa tagagcctgt agacgaagaa aaactgaaag cccatattgc
     2881 tgcaatggaa aattatggca actttttcgg gcaaaattta tttgtcggcg catcaggtgt
     2941 actgttgatt gttgcgacgt ttcattcatt acatatggaa gtaaaggccg tcgagattgc
     3001 gttatattct gcccctatcg cgattgttgt gctgattgtt ggtgtgattc aaaatgtctt
     3061 gtttgatcga aaaatgaacc gtaagtatgg tgagaaaggg gggacacaag atgagtcatc
     3121 aaatgattag tcaaattcta gaaatcttct atgtgcttat cggtttacag tttgtttata
     3181 cagcttatcg tgtgtatcgt gaaccgagca atatgaaaag aatcgggaca gcaatgtttt
     3241 ggtgtatttt aggtttatta tttatggtag gaccttattt tccgaattgg ctcaatggtc
     3301 tgctcgtatt gttaatgggt tttttaacga taacgaaaaa tgtaacaatc gggaaagtgg
     3361 ttggggtcga gcatcaagaa gaagaacaag gggcgactcg ctttggaaat ttattattta
     3421 tcccagctgt cgtgttagcg attgttgctg tcattgtgtc gacttggacg ccattaggtg
     3481 gtgcaatagg gataagtatt tcttctattg tcggactgat tgttgcgtac ttgattatcc
     3541 gtccgaaagc gaaagtcggc ttatatgata gtgatcgttt agtgcaacaa attgggacag
     3601 tcggcattct tccacaattt ttagcagcac ttggtatttt gtttacagtg agtggggtag
     3661 ggacgacgat ttcaaaaggg atatcgagct ttttacctca agataatgcc ttactcggtg
     3721 tgatcgcgta cattttaggc atggtgctct ttacgatgtt aatggggaat gcatttgcag
     3781 cgtttacagt catcaccgcg agcattggtt taccgtttgt gattcaaaac ggcggtgacc
     3841 caacgattgt cggtgcattg gcgatgacgg gcggtttttg tggaacctta cttactccta
     3901 tggctgcaaa cttcaatacg ttacctgttg cattattaga aatgaaagac gaattagctg
     3961 tgattaaagc acaagctcca atggctataa tgctcatcgt cgtgcatatc attttgatgt
     4021 atatactggc tttttaaatg aataaaggag gttttaagtc aatgaaagtt ttagtcactg
     4081 catttgatcc attcgctggt gaaaaggtga atccagcatt gcaagcggta caacggttac
     4141 ctgataccat tgaaggacac gttattgata agttagaaat tccgaccgtg ttttaccaaa
     4201 gtattgaagt cgttcgagaa aagcttgcgg aaacagagta tgacattgtg cttgctatag
     4261 gacaggcggg tggacgctat gaaatcacac cagaacgcgt cgccattaac gttgatgatg
     4321 cacgtattcc ggataatgat ggacaacaac cgattgatca gcgcattcaa caagatgggc
     4381 cgccagcgta tttcacccca ttacctgtaa aacgtatggt agaagcgatg caagctgaag
     4441 gtgtgcctgc aagtctatcg aatagtgccg gtacatttgt gtgtaatcat attatgtacc
     4501 aacttgccta tgaagcagaa cgatattatc caaagttgaa aacaggattt atacacgtgc
     4561 catttgcgcc tgcacaagtg attgataagc cgggaaaacc atcgatgtcg atagagatga
     4621 tggtaaaagg attaacagct gcgattcgcg tgtgtctcaa ctatgataca gatgttgcaa
     4681 cagttcacgg cacgacgcat taaagtttga aatatattgc acatgtctgc actttagaag
     4741 cgtttagaaa ttgttttagt atttttaaaa tgagtttgcg atatataact tttggaaatg
     4801 tgttaacttt tggttactaa aggtataaaa tggaaataac taagtatgtg ggggcatctt
     4861 aggcatataa aataaacaat catttcaggg gggatattga tgcaagaaca tcttattgta
     4921 actttagatg gtaaagatta tcttgtagaa ccgggcaaaa atctgcttga attcataaaa
     4981 gagcaacaaa cgtttgtacc ctcaatttgt tataacgaat cactaggacc aattcaaaca
     5041 tgtgatacgt gtgccgttga aattgacggc aaaatcgaac gtgcatgtgg gacgacggta
     5101 caacgctcaa tggttgtgaa cacgacaaca caaccggtac aagatagcca aaaggaagca
     5161 ttagatcgca ttttagaaaa acaccaactt tattgtacag tttgtgatta caataacggt
     5221 aactgtgaga ttcataatac gatggaccaa tggggattgg aacatcaaac gtatgaatat
     5281 aaaccgaaac cttatgaagt ggattttggt ccattttatc gttatgatcc gaatcaatgt
     5341 attttatgtg gacgttgtgt cgaagtgtgt caagacgttc aagtgaatga aacgttgtcc
     5401 attgactggg atcgtgaaca tccacgtgtc atttgggata acgatgtctc aattaatgac
     5461 tcttcatgtg ttggctgtgg tcaatgtgca acagtgtgtc catgtaatgc aatgatggag
     5521 aacaacatgg tcggtaatgc aggctacatg acagatattg agccaggttc actggcttcg
     5581 atgattgatt taacgaagaa agcagaaaca ggctatggtc ctttgtttgc agtgtctgat
     5641 tccgaagcgg ctatgcgtga agaacgtatt aaaaagacga aaacggtatg tacatattgt
     5701 ggtgttggtt gtagcttcga aatatggacg aaagaccgtg aaatcttaaa agtacaacct
     5761 tctcatgact caccggcaaa caaaatttct tcatgtgtga aagggaaatt cggttgggat
     5821 tacgtcaatt cagaagagcg tttaacgaaa ccattaatcc gccgtggtga tcaatttgaa
     5881 gaagtcgaat gggatgaagc gattaaacat gtcgcaacac gtatgcaaga aattaaagcg
     5941 caatacggtc cagatgcatt gtcattcatt tcatcttcaa aagcgacaaa tgaagaatcc
     6001 tacttaatgc aaaaacttgc acgtcaagta attggtacga acaatatcga caactgttca
     6061 agatattgcc aagcaccagc gacaaaaggt ttattccgca cggtcggtca tggtggggat
     6121 tcaggttcaa ttgaagatat cggtaaagca gaaatggtta ttacgatcgg tacgaataca
     6181 gcagaagcac atcctgttat cgcatctcgt attaaacgtt cacacaaatt attcggtacc
     6241 aaattgcatg tattcgacat tcgtaaacat gaaatggcac aacgcgcaga tgaattttac
     6301 caaccttatc caggtacgga cttagtatgg ttatctgctg tgactaaata catcattgat
     6361 caaggatggc atgcacagtc atttattgat gaatgggtcg accattttga tgaatactat
     6421 caatcactcg aaccgtatac aatggacttt gcagaagaac atacaggcat ttcaaaagag
     6481 cgcctcatcc accttgccaa agaaattgtg agtgttaatt cagtttcaat ttgttgggcg
     6541 atgggtgtga cacaacaaga aacaggttca gatacaagta cagcgatttc taacttgtta
     6601 ttagcaacag gtaactacat gaaaccaggc gcaggttctt atccattgcg tggtcataat
     6661 aacgttcaag gctgttctga ctttggtagt atgccggata aattccctgg ttaccaaggt
     6721 gttgaagatg atgaagcgcg tggccgttat gaagcaagtt ggggtgtgaa attaccaagt
     6781 catccaggtt acgacaacca ccaaatgatg gatcatattc atgcaggtga cgtacacagt
     6841 ttattcattt taggggaaga taccggcatt gtggactcaa acattaacta tgttcaagct
     6901 gcacttgaaa aagtagactt ccttgtcgtc caagatgaat ttttaacatt tacagctgaa
     6961 tatgcagacg tgattttacc tgcaagcccg tcattagaaa aagatggtac attcacaaac
     7021 actgaacgtc gtttccaacg tttatatcaa gtgttagaac cgcttggtga ctctaaacca
     7081 gactggcaaa tcacacaaat gattgcgaaa gaacttggtt ttgattgggg ttacaaacac
     7141 ccagctgaaa ttatggatga agcatcagac ttaacaccta tgtttgctgg cgtgaaatat
     7201 catcgtttag aaggttataa cagcttacaa tggccagtcg ctgcagatgg taccgattca
     7261 ccattattgt ttactgaacg ttttaacttt gataatggta aggcgaaatt ctttgcacta
     7321 gatttcaata acttctataa aacaaatgaa acatacgact tacatgtgaa taatggacgt
     7381 gtcctcgaac atttccatga aggtaacatg acatacaaag taccaggatt aaaatacaaa
     7441 atgccgactg cgtttgttga agtatcgcca gaattggcaa aagaacgtgg tatccatgaa
     7501 ggggcagcag ttaaattaat ttctgaacat ggtgaagcga caatgcacgt gcacattaca
     7561 gatcgcgtgt ccggtaaaca aatttattta ccgttgaatg acaacagtgc agcagcgatt
     7621 aactatttaa caagtagtgt gacagaccca gaaacacata ctccggctta taaatctaca
     7681 agctgtcgta tggaaatctt gagtaaacgc ggaaaatcac cgcttaatcc aaccaacttt
     7741 cgtaatcaaa caagaaatcc acagtacagc gtacgtgttg acaaaaaatg ggcaagatcg
     7801 gattatgtct tcccagggga tcaggtgatg aaataatggc tgaacgtatt agaaaaatta
     7861 aacgtcttga aaaaagtgaa gcagcaatca aagcagaaag tttatcacaa gttacggatg
     7921 ccattgtgga aaacaaagat agtatcttaa aagccattga ccttattcgt acattagatg
     7981 aggctaaaat attagatgca ttaaatggtg ccgtgaaaca acgtggtgtc attacagaaa
     8041 aaattaccgc tgaattgaat aaagatcaat atacaggtgt cattcataat atgggccaaa
     8101 tgttgttctt attaggtgat ttgcagactg atgaactgcg cgtattgttg aataaagtga
     8161 atcgcggtat tcgtgtagca aatcaggcga gtcctcatgc acgtacttct gtgacaggtt
     8221 tgatgcgtgt gttgaaggat gatgagatga atcaaagttt gacttacttt ttgaatttgt
     8281 tgaaggggat gtctcgcgat tagtttttgg acatttcgga gtggagtggc agttgatgtc
     8341 attccacttt ttgttttgtg cagttttagt acatttcaag aacattggat agtacgtatc
     8401 tttcagattg ctgtgaacga ttctgcatga atggttgttt gactgattga atgaacgcta
     8461 tggtctcgcg ttcttagggg ccttgcctca actcaattcg gcttgattga agtgaacatt
     8521 tgatgggtgc cgaattggat tttgggagca gtacagaaat ctcatgtgca acaaagattt
     8581 cgtcgtactg cccccgcaag gctgactaga cttctcaaaa gcgtatgcat tgagaagtca
     8641 gacagctact gcgttaaacg gtagccactt ttaaagttaa atgacgttgt ttagccttta
     8701 actgatccct caagcgtctc ggccagcgtt acaaatcaat cagtcaattt tgattaaatg
     8761 tgcagcatcg ttcatgcaac cttagaaaga gagcgattga taaaatgtga catccatcac
     8821 aaagataaaa agtaagagag aaaacaatac tctgaaatat gcatttcttc aaaaatgaat
     8881 cggtgctatt cttctaaaaa agggtgtggg atgggtatgc attttcagtt tacataaagt
     8941 tttaaagctc gctctacgtg tatcaggtcg ttttatgcaa cgtgctaaga atgaatgctg
     9001 tgtcgcgatg atgttcgttt catgataaaa taatacaggt atgaaagagg tgggaaaatg
     9061 gatacaaaaa agattaaaat attaggtatt gtttccaatg tatttttaat tttgggattg
     9121 attttacttg tttttgtcag tgcatggatt gcgctcgttt gctttttaat ttcgttaggt
     9181 ttgagtctcg tgttattcaa tatgcttttt cacggtaagc gtgcggtaaa gattattgtt
     9241 aatatcgcgt attttgtagt tttatgtgct gtaggtgtga tgatttatat gtcgaggtaa
     9301 catcaatcat gtaaaggagt ctatgagatg aatcggtcgc gtaaagtgaa acctttgaaa
     9361 gctattatta ttgtattatt tgtgttattt gtcgttttat ttgtggtcaa tgaaacgtct
     9421 ctttttaaaa atgataaaac acatacattt gatgaagctt ttgccaaaca aatgcaaggg
     9481 gatgcgttac atacaaaatc taaaggtaac cagtttgtca atgcttctaa gcaagacatc
     9541 aaagctgcga tgactgttga ccacaaagat tcagatttga tgtatatgga tttatctgaa
     9601 ccgattgaaa tgtcggaaga tgaagtgaat gacatgttaa aggggaacgg cattttagaa
     9661 gggcatggga aagctttttt agaggcacaa aaggaaaatg atgtcaatgt catttattta
     9721 gtgagccatg cgcaattaga aacaggagaa ggtcggtctg ctttggcgaa aggtttacgc
     9781 aaaggtgacg ctcgttatta caattttttt ggtatcggtg cgtttgatcg taaagctgtc
     9841 aaaacaggcg caagttatgc tcaaaaagcg ggatggactt cacctgataa agcgattaaa
     9901 ggtggtgcgt cttttgtaag aacgcaatat tttgaaaatg gccagctcaa cttgtatcaa
     9961 atgcgatgga atccgcaaag ccctgcgacg aatcagtatg cgagcgacat cgattggccg
    10021 gctaaaattg ctgcacgtat ggaagtttac taccaaaaat atggtattaa aaaagatgat
    10081 attcgaaaag atttttacaa gaaatgatca atgacggggt gatgatatga aaatcggcat
    10141 tgtgggtgca ggcattggtg gtcttacagc tgcaataatg cttcgagcac aaggacacga
    10201 tatctcaatt tatgaaaagc aagacactat tagtgaggta ggtgcgggca ttggtattgg
    10261 agacaatgtg attcaaatgc tcggcgaaca tgatctcgct aaaggaatca aaaatgccgg
    10321 tcaagtcttg acagcgatgc gtatttttga cgagcaaggc cacatattaa atacattgcc
    10381 attaagcgat aaaaacacga atgtaacgtt agaacgtcaa acattagtgg accttttaaa
    10441 atcctattta gatgatgaat tgtttcattt taaccacaaa gtgacgcatg tcgaaagtaa
    10501 tgggactact gggacgattc attttaaaga gcaaagtgca gtacaagtcg atatgattat
    10561 tggtgctgat gggattcgtt cacaagtgag acaatctgtt caacctaaaa gtaaagttca
    10621 atatcaagga tatacatgct ttagaggaat agttgacgat atggacatgt taaaaccgat
    10681 agccgatgaa tattggggac aaaaaggacg tttcggcatt gttccattat tagatggtcg
    10741 ggcatattgg tttgcgacga tgaatgcgaa agaaaatgat atgcacttta aaaagtttaa
    10801 taaaccttat ttacaagcgt attttaatca ttttccagaa ccagtgcgta aagtattaga
    10861 tttacaagct gaaactgcga ttttgcatca tgatatttat gatttgaagt cattgtcgac
    10921 atttgtgtat gaaaagaata tcgtgctatt aggtgatgca gcacatgcga caacaccgaa
    10981 tatgggtcaa ggtgcaggtc aatcgatgga agatgcgatc gttttatcaa atgtgttgaa
    11041 aaaatatgac acgctcgaaa gtgcactgaa acgctacaat cgattacgtg tgaaacatac
    11101 ccgacaaatc acgaagcgct cgcgtcaaat tggaaaagtg gcgcaaaaaa cgaatggact
    11161 tagtattaaa atgcgaaatc gattcatgcg attgttgcca acatgggtca tgaaacgaca
    11221 aacacaactt ttatatcgta cgaaaagtga ataataaaag taaaaacaga gacttggaga
    11281 ttatgttttc tcagtctctg tttctatttt ttaaattgat atcgattaag tcgtcgaaaa
    11341 ttaagaatga attgggagaa gggacataga aaaattttac gtacgcccca tctcactcct
    11401 ttattttaca tgtagttcaa tagataaagg caaggggtgt ggcatcgatt attttggcaa
    11461 gttaacgata aaatcaggtg tttccccatt agctttttta actaagttat tcgcaacgat
    11521 ttctgccatc atatcacgtg cttcaaatgt tgcattaccg atatgcggtg taatgaccac
    11581 attatctaat gatttgagac cttccgtaat ttttggctca aattcataaa cgtcaagtgc
    11641 agccccttca atcgttttgt tttggagggc ttctaataat gctgcttcat gcacgatagg
    11701 accgcgagaa gcgttaatca gataacttgt tggtttcatc atttctagct gaggtgtatc
    11761 tatcatatga cgcatagacg gttgatatgc agcgttaata gcaacaaaat ctgctgtttg
    11821 aagtaacgtg tctaaatcta aatatttcgc gcctaattca cgttctttgt ctggtttttg
    11881 gtgtggccct gtgtaaagaa tatccatatc aaatcctttc gcacgacgcg caacggctgt
    11941 accaatttca cctaagccga taatacctaa ttttttacca gatacttcac gaccacggaa
    12001 aaataacggt gcccacccat tgaaaccttc attacgcatt agacgatcac cttctgcaac
    12061 gcgacgtgct gcagcaagta aaatcgccat cgttaattca gccgttgaat ttgtagaggc
    12121 tttaggtgtg tttgaaacat caatattttt tgaacgtgca taatcgacat cgacattatt
    12181 gaaacctgca ccataattgg cgataaattg taaatttgaa ccactatcaa tcacttcttg
    12241 gtccacttct gtagataata aactgacgag tccgaaagcg tctttaacgc cagttttaag
    12301 cgtttcttta tcaataattc cttcaccttc gtacatctca acttcaaaat gagcttttaa
    12361 tatttcaagt cctttttctg ggataggacc tgcaataaat acttttttca tatgcgattc
    12421 ccacctttct tctctagtat atgaaacccc tttctagatt acaagaaatg ccggttatac
    12481 aactaatttc aatccaactg cagaaatgat aatcaagaaa atgaaaaaga ttcttataaa
    12541 ttgtttggat tcatgataaa cgaccattcc taaaatcgta ccacctgctg tgccgattcc
    12601 tgtccaaatg gcataagcgg ttcccattgg tatgtctgcc attgcccaag aaagactggc
    12661 taagctcaaa gcaaaggtga tagcaagtaa tacaataaaa cgtttttgat gttggcgtgc
    12721 atattcgttt aaccaaagca cgcctaatac ttcaaataag cctgctaata aaagtgcgaa
    12781 ccaactcatt gctgttcacc tgcctgatct gttgttaatt tgagaccgat aacgccgata
    12841 agtaatgtga ggatgaagca cagtttgatg aaactcactg actcattgaa aaacagcatg
    12901 ccgacaatga ctgtgcctaa cgtgccaata ccgacgaata cagcatatac tgtgcctaca
    12961 ggtaagatgc gtgaagcaga taccatcatc caaaaactta aactgatcag cgcaatggtc
    13021 aatatccatt ggtaaaggag atgagaatgc gttaagccaa taacccagac cacttccatt
    13081 aaaccagcga aaatcacttt cgtccattgc atgtgaaatg cctccttgaa atcatataat
    13141 gccatcatat aatgaatatt catttgtcgg caagatgaag atgagccata caaatttttg
    13201 atgcaatatt tttgttaaac tcgtcctatt cttaagattt ctgcgtttga ttatccacac
    13261 gatagcatcc aatttttacg tctagttgat cctcattttt tgccgctgtt atgattaata
    13321 agataggggg ttggaaaact caatgttcta atcctatata cacaataaaa aaccattgct
    13381 gtatgctgta acaacaatgg ttttttaaat ttaatgattc atgtcatcct atacgtgaat
    13441 gtagttgtat gaactagctt cagatgcaga gattgtacgt gtacttatgt tgaatggacc
    13501 gccgtcatag ttcatttctg atactgtaat tgaaccatct tcattgacag attcaacgta
    13561 tgctacgtgc cccataggac ctgcatttga ttgtaagatt gaaccttctt cagggttgtt
    13621 gtctacagtg aaacctgcag ctgatgctga gcttgcccag ttgtttgcgt taccccaagt
    13681 tgaaccaatt tcaccgccaa ctttgtcata tacataccaa gtacattgac caggtgtata
    13741 taagtttcca gcacttgtta cgccagttga ttgtgttgaa gtagatatgc ttgttgtatt
    13801 ttgaccgtat gtgtatgttt ggttgctgtt tgcattgtag ttgtagtttg tattaccttg
    13861 tgcatttgtg ttgtaaccgt agttgtagct gtatgaatag ctgtaattac cttcagcagc
    13921 gtcagcgtta tcgtgttgta agcccaccgc agcggcagca cctaatccag cagttaatgt
    13981 agttgtagta gcgaattttt ttaacataat aaaagtcctc ctaaagtttt tggttgttta
    14041 ttttaatttg agaattgtaa aagttggttt gtttaattaa atcgttcatt taacgacaat
    14101 atgaacttta tcaaaaattg agccgtctgt gtggaatgtt acagttttgt aattgaatta
    14161 aaactcgaat gggatacgat gtaatctcat gacagcgaca cttttcctta tcaaatgtag
    14221 atttaacgcg ctatttagtt ttgtttttaa accttttatc attcaagatg ttacagtgaa
    14281 tgtaatattt agagcaatga cttaatttgt tttagacttt aaaaatgcaa cgtcattaat
    14341 tggaaaaaat gaactaaaac gaaacgtaca aaaatgaatt gttttatatc aagagttaat
    14401 tgaaggtgtt gaaaaagttc gattaaagta aatgctacat gggaagcagg ctatgaggat
    14461 gggcaacgag cagtctatca atatgtgtag cactaaaata aaaaaatcag caacataatt
    14521 gtgcgcataa agggtataac taagcaacaa cgcgatgaga atgcaacgat attcaaaaaa
    14581 ttgttttctt ttgataatcg ttctgttacg attcatgttg agtcacaatt cgatgacacg
    14641 acatcaaaca gaaaaaaaca gaaagaaggg taaataaatg aaaatagcaa ttgtaggatc
    14701 aggtaacggg gcagtgacag cagcggttga tatgatgaat caagggcatc acgtcaaact
    14761 gtattgtcgt aaccaatcca tcagtaaatt tgattatgcc attgaacaag gtggttttaa
    14821 ttttaataat gagggcacag aaagttttgt accgttcacg aatattagtg acgacatggg
    14881 ctatgtctta gagggtgctg aaattgttat gttatgtatc ccttcgtcat ttatcgaata
    14941 ttatgcggaa ttaatgtcat cgcatattaa taatgatcaa attattttct ttaatatggc
    15001 agcagcaatg gggtcagcac gttttattaa agttttagaa gaatacaaaa tagagacacg
    15061 tcccatcttt gcagaagcga acacattaac gtatgggaca cgcgtcaact ttgaaacagc
    15121 ttcagtcgat ttatcattaa atgtacgaaa agtttatttc tctacattaa atgaaaagga
    15181 tttaacaaaa acctttaaaa aagtggaatc gctctatcca tatattgtta aagaagaaag
    15241 tttatggcgt acaaacttag aaaacggtaa tccagaagta catcctggac caacgttatt
    15301 gaatgtggga cgtattgatt acagtggaga ttttgcgctt tataaagaag gaattacaaa
    15361 tcatacggtg cgcttgttac atgcagtcga agtcgagcgt ttaacgttag gacgtaagtt
    15421 aggttttgaa ttggaaacgg cgaaagaagc ccgtattgca cgtggttatt tagagcgtga
    15481 gatggaagat gaaccactca acaaactgtt caatcatagc ccggtctttt cacgaattcc
    15541 agggccgaat aaagtaaaca accgttattt aactgaagat atcgcttatg gcctcgtctt
    15601 atggtcgagc ttaggtaggg aaataggggt gcctacaccg aatattgatg cgattattgt
    15661 aatagcgtca acaattttag agcgtgattt cttcaatgag ggcttaacaa ttgaatactt
    15721 aggaagagaa aatgtagggt tagcttctta ctaaaaatac aaaggggagt gtgttgtgta
    15781 tgaaaagaaa acctacttta ttagagtcac tgtcaaccat tttcgtgatg atgattgtgg
    15841 tttgtgtagg ctttatcttt tttgaaatac ctgtacaacc tttattaatt atctcagcag
    15901 cgtatgcgtc atggattgca tggcgtgtcg gcttacgttg gaaagattta gaagaaggga
    15961 ttacggatcg tttagcgaca gcgatgcctg cgatattcat tattttgaca gtcggtatga
    16021 tcgttggttc gtggatgtat tcaggcactg tacctgcact gatttattat ggtttgaaat
    16081 ttttaagtcc gagttacttt ctcatttcgg catttctcat ttcagccatc acttcagtag
    16141 caacagggac ggcatggggg tcagcatcca ctgcaggtat agctttaatg gcaatcggct
    16201 tacatatgga tattccagca ggcatggcag ccggtgcaat tatttcaggt gcagtatttg
    16261 gagataaaat gtcaccatta tcggatacga ccaatttggc atcattagtg acacgtgtga
    16321 acattttcag ccatattaaa catatgattt ggacgactgt accggcatct atgattggcc
    16381 tcatcgtttg gcatatcgca tcaagaagat tttcagttca gacgaataca gagcaaattg
    16441 acgcattgtt aaaagacatt gctacaatgt acgatattaa ctttttcatt tggcttccgt
    16501 taattgtcat tgtcgtgtgt ctcttagcta aaatttcaac tgtaccatcg atgctcattt
    16561 caagtgtcgt agccattttc gttggttggt taaacaacgg atttcaactt aaaaatggct
    16621 tcattgcgac atttagtggt tttacaccaa aaatgttact tggtcaagaa ggcttgtctc
    16681 aaaaagcgtt gtcattgatt gagcaaggtg gcatgatgag tatgacgcaa gtattagtga
    16741 cgattttttg tggctatgct ttcgcaggaa ttgtcgaaaa agcgggctgt ttagacgtaa
    16801 ttttgcatag catttctaaa aatattaatt cacgcggtca gctcattctc gtgacggtta
    16861 tcggaagttt aatgatggtg ctcgctgcag gggtggcgtc agttgtgatt attatggtcg
    16921 gcgtcttact catgcaaatg tatgacaaaa tggacctgga tcgggtgaat ttatcgcgaa
    16981 cattagaaga ctctggtacg atgattatcc cactcattcc atgggggacc tcaggcattt
    17041 attatacgca acaactgggt gtcggtgtcg gtcaattttt catttgggct gtaccatgtt
    17101 atctttgcgt atttttcgca ttgttctatg gctttaccg
//
LOCUS       DANHOL010000042        17114 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.042, whole genome shotgun sequence.
ACCESSION   DANHOL010000042 DANHOL010000000
VERSION     DANHOL010000042.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 17114)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17114)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17114
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.042"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            139..750
                     /locus_tag="PTC08_001012"
     CDS             139..750
                     /locus_tag="PTC08_001012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019236221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4355 domain-containing protein"
                     /protein_id="HDK5682526.1"
                     /translation="MNTQDKLKFNLQFFSEDLNKDSLNDDPEKPKDTDLDSDEETKTY
                     TEEEFNKRLHDELSRRMKQKEKEKQEAVEEAAKLAKMNKDQKAEYEREKLEAELKQLR
                     AEKAMNEMRSEARVMFKDKDIDASDELLDIVVSDSAETTKNNVDNFTKILDEMVRKKV
                     QETLRQNSPKSFSKSGLSRDEILAIKDDSERQSAIAQNMHLFN"
     gene            768..1679
                     /locus_tag="PTC08_001013"
     CDS             768..1679
                     /locus_tag="PTC08_001013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001271960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsid protein"
                     /protein_id="HDK5682527.1"
                     /translation="MPAENNLINVEALGKAKSIDFANKLGVGLTKLFEALAIQNKIPM
                     NVGSALKQYRFKVEDSEKPNGDVAEGDVIPLTKVTREQVDITELQFAKYRKSTSAEAI
                     QAHGYDLAINQTDNEMIKYVQKKFRAKFFGTLKSAIENEKRTNKAKLSAKNLQGALSK
                     GRANLSVLLDDEITPIAFVNPNDTAEYLANGFINSTGAQFGVNLLTPYVGVKIVEFAD
                     VPQGEVWMTVAENLNVAYANPRGELARAFAFSTDATGFVGVLHDIQPQRLTSDTIYAS
                     AISMFPENIDAVIKVSIKADDAVNLPS"
     gene            1769..2218
                     /locus_tag="PTC08_001014"
     CDS             1769..2218
                     /locus_tag="PTC08_001014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000087695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ig domain-containing protein"
                     /protein_id="HDK5682528.1"
                     /translation="MTRKLKLYSNDEVVASAEGDGRVNVSLSGLEPATTYPKGKYKVA
                     FEENGKESEKVDVPEFTTNSILITSISFVPESKTISNGTNEQLEPNISPSTATDKSLS
                     YVSNAPETVSVDENTGVINALQTGEAVITATTKDGSNKTAQITITVE"
     gene            2230..2562
                     /locus_tag="PTC08_001015"
     CDS             2230..2562
                     /locus_tag="PTC08_001015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage head-tail connector protein"
                     /protein_id="HDK5682529.1"
                     /translation="MSYLDDVKSRIGLNDNEQDKQLNSIINNVAAELLSRLPVDTISI
                     PDRLRFIVVEVSTKRYNRIGAEGMSTDSQDGRSNTFERNDFEEYQSIIDALYPKLDSS
                     ERGSVNFY"
     gene            2863..3213
                     /locus_tag="PTC08_001016"
     CDS             2863..3213
                     /locus_tag="PTC08_001016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016064896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HK97 gp10 family phage protein"
                     /protein_id="HDK5682530.1"
                     /translation="MEARGLKELIAHMKSMRDNIDDDVDKILKNNANEGVGIAVSNAK
                     KVMNKGYWTGNLARSIEVKKMGDLHYRVISTAHYSGFLEFGTRYMEPAPFMFPTYQTL
                     KKSTLNDLKRLLNG"
     gene            3223..3618
                     /locus_tag="PTC08_001017"
     CDS             3223..3618
                     /locus_tag="PTC08_001017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000921394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682531.1"
                     /translation="MLESTPQQALYDYIFTQLLGYGIDVIDFKELNSQLTYPFFVLRD
                     VEVSKSKYTMENVGGELTVTIDLWNYADDRGQHDSIVYAIESMLTVIESVESYQLILD
                     GMIIKTLNDIENSDRQLLHTVIIATYKLF"
     gene            3636..4289
                     /locus_tag="PTC08_001018"
     CDS             3636..4289
                     /locus_tag="PTC08_001018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major tail protein, TP901-1 family"
                     /protein_id="HDK5682532.1"
                     /translation="MAKKDSKDRLFLFRIAGQKVDAKKMMFLTEYSVSLEADSENEDT
                     MDDSYSTGGSLENTISATAKMDYRDSFADEVEDAVRDGIIYEAWEIESKVEGKGVNAG
                     KFKAKYYQGKFKKFESKGEVKGVDEYETEFNVFGKYQRGFATIPETIKTKLELAGYRF
                     HNTTKDDPATEVTQNIPQPTVDTEDMEDSRDDMVSGVAKPSNVQAVPNAKSVSISAE"
     gene            4347..4730
                     /locus_tag="PTC08_001019"
     CDS             4347..4730
                     /locus_tag="PTC08_001019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015977907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail assembly chaperone"
                     /protein_id="HDK5682533.1"
                     /translation="MITVKNGKHGLELKFGLGQLTAIDKSLGLNVEKINLGEGLSMLI
                     PKLEKGNIIALAKVVNAATSGQKGRPKTDEELEEVLINARDEYGSFKKFGQAIIDFLG
                     ERPLTQDLVQDHLKDEEAETVTEEQ"
     gene            4757..5107
                     /locus_tag="PTC08_001020"
     CDS             4757..5107
                     /locus_tag="PTC08_001020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001281461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682534.1"
                     /translation="MSDLKMTSLKEINEMTLTEFNYRMYALRFDVLKEEYERYKLAFA
                     IRDAAATKNEGTEKEPKEVYRFKSPNDILDYEVNYNRLLDGKEIVFTDELEEVEPENN
                     NFLKAIAEINNNIK"
     gene            5124..8231
                     /locus_tag="PTC08_001021"
     CDS             5124..8231
                     /locus_tag="PTC08_001021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000064033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDK5682535.1"
                     /translation="MSNESYTVSSDLKADTARFKKAIDSAIRTLRQYEKITSRIKDVE
                     LDADDKLIKEKVKQAELALKRIDGKKSNATIDASTKIAETKLKNYEKALQFLDNKLVK
                     TAIDLQNRLFVSKFNKTKAEINKLDGKTVNTELEVKDSVAVNKIRRFKALLRSIPNRR
                     KVRVDADGNSFLRALDYLNKQSDVFVGRMDRIAKSIRTFGTIGANMIQGTLLSSFSAL
                     IPIIASLVPAIMAVGNALAVVGGGALGLAGAFGIATAGAVGFGAMAISAIKMLEDGTL
                     QASAATYAYKQSLKGVTNEWQKIISLNADSIFGALSSALNGVRTTLKNLTPFLKGVSE
                     AVNSTAQNFEKWVSSSSTAKKAFETMNTSGVKVFSSLLSAAGRFGDGLVNILTQFAPL
                     FEFVANGLNNMGASFQEWANKVSTQQGIQKFIDYVKVNLPIIGKIFGDTFLGIFNLFK
                     AFGSNSQTIFEALAQMASKFRAWSEQVAQSDGFKKFIDYVQQNGPTIMSLIGNIIMVL
                     VNFGTAMAPIASVVLNVVTAITGFVAKLFETHPIVAQIIGLAITFGGVLMTWIPIIVG
                     IVSYLAPLIARFGFLKTSMLLLSRVFTLLSGPIGIVSKLFPILGAAIGFLTSPIGLVI
                     GAIIALIAIFVILWNKNEAFRNFIINLWNSIKDFFINLWTTLATIASVLWQLLLTTIV
                     NIVISIQTWLTTTWQNILTFLSTLWNTLIVIATTIWNLLVTVIVTVITTILTVQQTIW
                     NSILSFLQTIWNTVVSVATTVWNTLVTVITTVLNAINSFVTTIWNAIYSFFASILSRI
                     SSTVSQKFSEVYRWISTKIQQAYSILSSILSNMWSVVSSKFSQIVSTVISKMVEFYNA
                     IKQKVQDSLNAVVNFVGEFMDAGRNLIMGLVNGVKNAAGALIDAVTGAVSGAIDKAKS
                     LLGIKSPSRVFKQIGVYTMQGLGIGVDQEGQNAVGSVVDVARQLTKAFNPVLSLPSIS
                     DATSGLNGLSGLSANLTTQIQHTHSFETSPRMKTVRIEMRLDNDAIYGIVNDKQAEKH
                     SIFEM"
     gene            8244..9176
                     /locus_tag="PTC08_001022"
     CDS             8244..9176
                     /locus_tag="PTC08_001022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail family protein"
                     /protein_id="HDK5682536.1"
                     /translation="MDIKITKLDGTSYHLEDYKMIVKDVIVESIEMKDDYQDYEGMHG
                     RHLVSSLYHSRKIHVPVFFVADDNLDYAIQRNLLYELVQDEKPFYIQELRRHDKVNYK
                     FKNTLATDYQQVDDHGIPIFDDDNLQVNAKRYLVKLSNVLIPEQKNNIGNVSLEFVTT
                     HLPFAESVETSLDLHKQLINGFWASDDDIDFDDTAKQTYIFNNVKAGQVYYHGTVPNK
                     QFNMYKKVRITIGKATNDFQWSLSGSDLMRVSGVEFKSGDVLEYDGLRITKNGRSVVN
                     ESNIALPVFLPGFNEFRFNQNVKKAEFDMRFYSK"
     gene            9189..10586
                     /locus_tag="PTC08_001023"
     CDS             9189..10586
                     /locus_tag="PTC08_001023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682537.1"
                     /translation="MIKLRNILGEAYFLQVPTELTERISGESQLTFSFSENESNREIV
                     NTISKKWQVTNVGGQNDDKIYTVALVSKESNSLTTRVTVHCKEKQIDDLKAKRIYDNL
                     TGSFTAERFFSTVFKGTGYKYKLDAKVKALKFENAGDGDTVLETFQKGLERYNLEFKY
                     VPKTKTFILTKKVFQKADYFIENGTNALNFKLEEDSSEFYTYIRGYGNFDDNVKFQEA
                     SMQLIYQHPLADDIGIYEAPAIIDGRIKDEEFLRNKMINTVDNSLKTSLTLDFITLQE
                     EYAEAVPVVGDLVPVKDDIIDVFDFVRIVEVQTKRDINNKIFEQNATLGDYKKQDRYN
                     SKVSNSVSLANSISGSSTEIREAKDKIKGFVSAANNVLDMGNALRADSKGIKSVNKLL
                     NTVFTPDKGIVISNDGGKTFVTALDGDGINVDVIPVATTTKNGLMSKDDKIKLDNLNG
                     VGSSRLGSIFYKEVK"
     gene            10590..11282
                     /locus_tag="PTC08_001024"
     CDS             10590..11282
                     /locus_tag="PTC08_001024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002494385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682538.1"
                     /translation="MAEITKARTLTYDGEEVYARSHIDVVDGLDKSKLLTDEQKQKLE
                     NFNADAIDVATPSKNGLMSAQDKTKLDSLKQFNPDTLTNATTQKAGLMSAEDKQKLDE
                     LKTNSNEYDKGISGGSASNIIIESNVNRWPNNTQVVNLSKKVSECKNGVILVWRSDTE
                     DDYYHYQYVPKYHVSAHSTTKIVHLIPTNSANEFCTKTVIVKDNSITGTADNHNRATN
                     ANKVRLHEILEY"
     gene            11294..12337
                     /locus_tag="PTC08_001025"
     CDS             11294..12337
                     /locus_tag="PTC08_001025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HDK5682539.1"
                     /translation="MKLKLSNVFRDFKKDVESNFKEIDKLLTELLDIKSKTSNKYLDS
                     LIDTLFTKRYDQLQKEIRAIVLPEMSPLAITEDYEKSLSDLKGERHTSLKSRLDADLN
                     QIKSQSQKTANDDRFIVTENGTIFADFVKKSKTIKSVKKIGIIGDSVAKGSRASKNFG
                     KYLSEKLVATVQNEAVSGATMSTVKANSIYEQASKIRNKDLVIIQGTDDDWLYNGSSG
                     VQIGTSKTNEKTFYGAFCKTVELIKSNNPKAKILVMTATRQLPVNGTTIRRKDTDKNS
                     LGLDLEAYVNAQVLACSELNVPVYDAYHTDLLDPYNPAFRVKNMVDGLHPNELGHEVI
                     THELLKNYYYFYG"
     gene            12354..13625
                     /locus_tag="PTC08_001026"
     CDS             12354..13625
                     /locus_tag="PTC08_001026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000013196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BppU family phage baseplate upper protein"
                     /protein_id="HDK5682540.1"
                     /translation="MANQDLFYDITKQGTSQEKQQYLVTRVGDGGLKTVTITVWSNGT
                     PYNLHGLTPVFEGVKPDGEKIIDTRGAIVLDPVNGVFRYTFPHQASTAEGEYRQAFFK
                     LKRGEQTDSTLEVKINVLKNMVEFGINSESYFTEYQQKIAELEGKINTYLEELKTKAA
                     GTEAQVEANATLAKALKQQLDLIQSIANERELLTKGEFNEALNTVNNNVDAISSKIDT
                     LKRETTEELERIKDEVTGVKTGVLDDVANITKSGVYYFNSTTQNVPTRNSNNANGYIE
                     AVMKDANNGMLTMLGSGYAIEKYNGKLHGRWVTSVPVKLWSGKLTKGQTATLNGNCHD
                     FGKLIIEVGYTTNRHAVEWVNIPNNGSTIYMNHIGMQSSGDGYKNGHLDEVVIQIKDD
                     THIVLQKTLKATGDAQAVDSDAYISAIYGIY"
     gene            13658..14032
                     /locus_tag="PTC08_001027"
     CDS             13658..14032
                     /locus_tag="PTC08_001027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000340977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682541.1"
                     /translation="MDEIKKIKQEIADLTERVDSIEQTANEAASHVVSLRKEYRNGHQ
                     ELQESHKELKDKQEKVVNENFEQTKILNRIEERYQTQVEVAQNNEGKTLALNKWLVGA
                     IWALVTIVMIVVITASINALIP"
     gene            14156..16045
                     /locus_tag="PTC08_001028"
     CDS             14156..16045
                     /locus_tag="PTC08_001028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosaminidase domain-containing protein"
                     /protein_id="HDK5682542.1"
                     /translation="MALPKTGKPTAKQVVDWAINLIGSGVDVDGYYGRQCWDLPNYIF
                     NRYWGFKTPGNARDMAWYRYPAGFKIYKNTTNFVPKPGDMAIWTGGNYNWNTWGHTGI
                     VVGPSTKDYFYSVDQNWNNANSYVGSPAAKIKHSYFGVTHFVRPAYKSEPKLTPIPPE
                     NKPIPKDPEPTKKPESNKPIYKVVTKILFTTARIELVKANRFVHYITKSDNHNNKPNK
                     IVIKNANTALSTNDIYKYREDLNEDEIPHFFVDRLNVWACRPIEESVQGYNNAIVLSI
                     TEARTAVSDNFKMNEIECLSLAKLLLEANGKKMNTSSIVIDKSSWRTFKLHTGKDSLK
                     SSGFTSKDYQKAVNELIKLFNDKDKLLNNKPKDVVEKIRIRTVVKENTKFVPSELKPS
                     NNIKDKQDSKIDRIISNYSLKQALDIQFRLNPKPQTSNGAAWYTASLNQAREAMDTNK
                     IFNNNVQVYQFLKLNQYQGISVDKLNKLLVGKGTLQNQGQAFADGCKKYGVNEIYLIA
                     HAFLESANGTSFFASGRTGVYNYFGIGAFDNNPNNAMEFARSHGWTSPAKAIIGGAEF
                     VGKGYFDVGQNTLYRMRWNPKKPGTHQYATDISWAKVQAKMISAMYKEIGLKGEYFIY
                     DQYKK"
     gene            16065..16319
                     /locus_tag="PTC08_001029"
     CDS             16065..16319
                     /locus_tag="PTC08_001029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage holin"
                     /protein_id="HDK5682543.1"
                     /translation="MINWKIRIKQKTFWVAILSAIFLFAQSIAKVFGYDIQVYTEQLT
                     DTLNSVLGILVLMGVIQDPTTQGVSDSHQALNYEEPRQKY"
     gene            16332..17087
                     /locus_tag="PTC08_001030"
     CDS             16332..17087
                     /locus_tag="PTC08_001030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHAP domain-containing protein"
                     /protein_id="HDK5682544.1"
                     /translation="MKTYSEARSRLRWYVGRYIDFDGYWAYQCMDLAVDYIYWLLDIR
                     MWGNAKDAINNDFKNMATIYENTPSFVPQVGDVAVFRNGIYKQYGHIGIVYNSGNTNQ
                     FLILEQNFDGNANTPASLRWDNYYGCTHFIRPHYKSENTTSKIANKISPPSHKAAGNS
                     ASKIISGSRAPYNLKWSKGAYFNAKVDGLGATSATRYGDSRANYRFDVGQAEYVPGTL
                     IYVFEIINGWCRIYWNNHNEWIWHERLIVKEVF"
BASE COUNT         6101 a         2692 c         3508 g         4813 t
ORIGIN      
        1 tacgcaattt taagctactg tgctgcagtg gcttttttta ttgcccaaac catgcttatg
       61 gcgttaaaag atgcaagtgt agtccaaacc atgcaatgac ataaaacttg caagagtaga
      121 ttaaaatgag gtgcttacat gaatactcaa gacaaactaa aattcaattt gcagtttttt
      181 tcagaggatt taaataaaga tagtcttaat gatgatcctg aaaaaccaaa agatactgat
      241 ttagattctg atgaagaaac aaaaacatac actgaagaag aatttaacaa aagactgcat
      301 gatgagttaa gtcgtcgaat gaagcaaaaa gagaaagaaa agcaagaagc agttgaagaa
      361 gctgctaaat tagcaaaaat gaacaaggat caaaaagcag aatatgaacg cgaaaagcta
      421 gaagcagaat taaagcaatt gcgtgctgaa aaagctatga atgagatgcg ttcagaagcc
      481 cgtgtgatgt tcaaagacaa agatatcgac gcaagtgatg agttactaga cattgttgtg
      541 tctgatagcg ctgaaacgac aaaaaataac gttgacaact ttacaaagat tcttgatgaa
      601 atggttcgaa agaaagttca agaaacatta agacaaaatt cgccgaaatc tttcagtaag
      661 agcggattaa gtcgagatga aatccttgcg attaaagacg atagcgaacg acaaagtgct
      721 atcgcacaaa acatgcactt atttaactaa aaaacggagg taattttatg ccagcagaaa
      781 acaatttaat caatgtggaa gcattaggaa aggcaaagtc tattgatttt gctaataagt
      841 taggtgtggg attaaccaaa ttatttgaag ctttagcgat tcaaaacaaa atccctatga
      901 acgtaggttc agcacttaaa caatatcgat tcaaagtaga agattctgaa aaaccaaacg
      961 gagatgtagc agaaggtgac gtaattcctt taacaaaagt tactcgtgaa caagttgata
     1021 ttactgaatt acagtttgct aaataccgaa aatcaacgtc agccgaagcg attcaagcgc
     1081 acggttacga cttagcaatc aatcaaactg ataacgaaat gattaagtac gttcagaaaa
     1141 agttccgtgc taaatttttc ggaacgctaa aatcagcaat tgaaaatgaa aaacgtacaa
     1201 acaaagcaaa gttaagcgct aaaaacttac aaggtgcttt atctaaaggt cgtgcaaact
     1261 tgtctgtgtt attagacgac gagattacac ctatcgcttt tgttaatcca aatgatactg
     1321 ctgagtattt agcaaacggc tttattaact caacaggtgc gcaattcggt gtgaacctct
     1381 taacacctta tgtaggcgtt aaaattgtag agtttgcaga cgtgccacaa ggcgaagtgt
     1441 ggatgacagt ggctgaaaac ttaaacgtgg catatgctaa tccacgcggt gagttagcac
     1501 gtgcatttgc tttttcaact gatgcaactg gtttcgttgg cgtgttacat gacattcaac
     1561 cacaacgttt aacatcagac actatttatg catccgctat ttcaatgttc cctgaaaaca
     1621 tcgacgcagt tatcaaagtg tctatcaaag cggacgacgc ggtaaattta ccctcgtaaa
     1681 ccccaaaaaa tcgaaatcac accgaacgca aaatcggtaa atatttcggt tgaatagggg
     1741 atttcaaaat tgagtaggag gtatttaaat gaccagaaaa ctaaagttat acagcaatga
     1801 tgaagttgtt gcatctgcag agggagatgg acgtgttaac gtaagtcttt caggcttaga
     1861 gcctgcaaca acttatccta aaggtaaata caaagttgct tttgaggaaa atggtaaaga
     1921 atcagaaaaa gttgatgtac ctgaatttac tacaaattca attctaatca caagcattag
     1981 ttttgttcct gaaagcaaaa cgattagcaa tggtacaaat gaacaattag aacctaatat
     2041 atcgccatcc acagcaactg ataaatcgtt aagttatgta tctaatgcac cagaaaccgt
     2101 atctgttgat gaaaacacag gagtgattaa tgcattacaa actggtgaag cggtaattac
     2161 agcgacgaca aaagacggta gtaataaaac agcacaaatc actattacag ttgaatagtg
     2221 gtgattaaga tgagttactt agacgacgtt aaaagtcgta taggattaaa tgataacgaa
     2281 caagacaaac aactaaactc tatcattaac aacgttgctg ctgaattatt atcgagattg
     2341 ccggtagaca caattagcat tcctgacagg ttgcgattca tagtcgttga agtttcaaca
     2401 aagcgataca atcgtatcgg tgcggaaggt atgtccacag attcgcaaga cgggcgtagc
     2461 aacacgtttg agcgcaacga ctttgaagag tatcaaagta ttatagatgc tttgtatcct
     2521 aagcttgatt caagtgagcg agggagcgtg aatttctatt gaggtattca gaaagggtcg
     2581 accttatcgt tgaagagcga ggtaaatata atcctttgac caaaaagaaa gaagctactt
     2641 acaaaacata tacaaaaata ccgtgtaatg ttaatagatt gtcgagagag cgtactcagc
     2701 tcgaatttgg cgaaatggct aaagatgtat cggtagtgcg tttgcctaaa caattaaaat
     2761 tcgaaccaac acacgtcttg ttaaaaggca gaaaatacaa agtcatggat attcgtgtgt
     2821 acgatcatag cacttcactt tttataagcg aggtgcttag tgatggaagc taggggcttg
     2881 aaagagttga tagcacatat gaaaagcatg cgtgacaata tagatgatga tgttgataag
     2941 attctgaaaa ataatgctaa cgagggtgtt ggtattgcag tatctaatgc gaaaaaagtt
     3001 atgaataagg gttattggac tggtaatctg gctcgttcga tagaagttaa aaagatgggg
     3061 gacttgcatt atcgtgtaat atcaaccgcg cattatagtg gcttcctcga atttggtact
     3121 cgatatatgg aaccggcacc ctttatgttc ccgacatatc aaacgttaaa aaaatcaaca
     3181 ttaaatgact taaaaagatt gttaaacgga tagaggtgtt acatgttaga atctacacca
     3241 caacaagcat tatatgatta tatttttacg caattattag gatatggaat tgacgttata
     3301 gactttaaag agttgaacag tcaattgaca tatccttttt ttgtattgcg agatgtagaa
     3361 gtaagtaaaa gtaaatacac gatggaaaat gtgggcggtg aattaaccgt aaccattgat
     3421 ttgtggaact acgctgatga tagaggacaa cacgacagca ttgtttatgc gattgaatcg
     3481 atgttgactg ttattgaaag cgtagaaagt tatcaactaa tacttgatgg aatgattatt
     3541 aaaacattaa acgatataga aaatagcgat agacaattgc tacatacagt gattatcgct
     3601 acctacaagt tattttaaca aggaggtcat aatgtatggc taaaaaagac agtaaagata
     3661 gattgttttt atttagaatt gccggtcaaa aagtagacgc taaaaagatg atgtttttaa
     3721 ctgagtatag cgtgtcactt gaagcggatt ctgaaaatga agacacgatg gacgattctt
     3781 actcaactgg tggatcactt gagaacacca tttcggccac agctaaaatg gattatcgtg
     3841 acagttttgc tgatgaagtt gaggatgctg tgcgtgacgg tatcatttat gaagcgtggg
     3901 aaattgaaag caaagtggaa ggtaagggcg taaacgccgg taagttcaaa gcgaaatatt
     3961 atcaaggtaa attcaagaaa tttgaatcta aaggcgaagt aaaaggcgtt gatgagtacg
     4021 aaacagaatt taatgttttc ggtaaatacc aacgtgggtt tgcgacaatc cctgaaacga
     4081 ttaaaacgaa acttgaactc gcaggatatc gattccacaa cacaactaaa gacgaccctg
     4141 caacagaagt tactcaaaac attccacaac ctacagtcga tactgaggac atggaagatt
     4201 caagagatga catggtgtca ggcgtcgcta aaccatcgaa tgtgcaagca gtacccaacg
     4261 caaaatcagt tagtatttca gcagaataat caacgggcta aatcgcccgt tttttattaa
     4321 ttttttaaac tatggaggct atttaaatga ttacagtaaa aaatggaaag cacggattag
     4381 aattgaagtt tggattaggt caattaactg caattgacaa atcgttaggc ttgaatgttg
     4441 aaaaaatcaa tttaggcgaa ggactatcaa tgttaattcc taagttagaa aaaggaaata
     4501 ttatcgcttt agcaaaagtt gtcaacgctg ctacttcagg acaaaaagga cgtccaaaaa
     4561 cagacgaaga gcttgaagaa gtattaatca atgcacgtga tgaatatggt tcattcaaaa
     4621 agtttggtca agctattatt gactttttgg gggagcgacc attgacccaa gacctcgtac
     4681 aggatcactt gaaagacgag gaagcggaga cagtgacgga agaacaataa catacagcag
     4741 aattgtaatc gcgtgcatgt cagatttgaa aatgaccagt ttaaaagaaa tcaatgaaat
     4801 gactttgact gagtttaact atcgcatgta tgcgttacga tttgatgttt tgaaagaaga
     4861 atatgagcgt tacaagttag cgtttgcgat acgtgatgca gctgcaacaa agaatgaggg
     4921 gaccgaaaag gaacccaaag aagtatacag gttcaaaagt ccaaatgaca tattggatta
     4981 tgaggttaat tacaatcgat tacttgatgg taaagagatt gtgtttactg atgaacttga
     5041 agaagtggaa cctgaaaaca ataacttctt aaaagcgata gcagaaatta acaataatat
     5101 taaataatga ggaggtggga taattgtcta atgaatcgta tacggtttcg tccgatttga
     5161 aagctgatac cgcccgattt aaaaaagcta ttgatagcgc tattagaacg cttaggcaat
     5221 atgaaaaaat aacatcaaga attaaagatg tagagcttga tgctgatgac aagctaatta
     5281 aagaaaaagt taaacaagcg gaattagctt taaaaagaat tgacggcaaa aaatcaaatg
     5341 ccacaataga cgcaagtaca aaaatagctg aaactaaact aaaaaattat gaaaaagcct
     5401 tacaattttt agataataaa ttagttaaaa cagctatcga tttacaaaat agactttttg
     5461 tatccaaatt caataaaacg aaagctgaaa tcaacaaatt agacggtaaa acagtcaata
     5521 cagaattaga agttaaagac agtgttgctg ttaataagat tagacgattc aaagcgttgc
     5581 tacgaagcat accgaataga aggaaagttc gagtcgatgc agatggcaac agttttttaa
     5641 gagcattaga ttacctcaac aaacaaagtg atgtttttgt tgggcgcatg gatcgtattg
     5701 ctaaatcaat ccgaacattt ggaactatcg gtgctaatat gattcaaggt acattgttgt
     5761 catcatttag tgcgttaatc cctataatag ctagcttagt accggcgatt atggctgtag
     5821 gtaatgcgtt agctgttgtc ggtggtggcg cgttaggcct tgcgggagct tttggtattg
     5881 ctactgctgg cgccgttggt tttggtgcga tggctatatc agcaatcaaa atgcttgaag
     5941 atggtacgtt gcaagcaagt gctgcaacat atgcatacaa acaaagttta aaaggcgtaa
     6001 caaatgaatg gcaaaaaatc attagtttga atgccgattc tatatttggc gctttatcat
     6061 cagctttgaa cggtgtacga accactttaa aaaacttaac tcctttccta aaaggtgtat
     6121 cagaagcagt taattctacc gcacaaaatt ttgaaaagtg ggtatcatct tctagcacag
     6181 ctaaaaaagc ttttgaaacg atgaacacat caggcgttaa agtcttttct agcttattaa
     6241 gtgctgcagg acgattcggt gatggtcttg ttaacatatt aactcaattt gcgccattat
     6301 ttgagtttgt ggctaatgga ttaaacaata tgggtgcgtc ctttcaagag tgggcaaata
     6361 aagtatcgac gcagcaaggt attcaaaaat ttattgatta cgtaaaagtg aatttaccaa
     6421 ttatcggtaa gattttcggc gatacattct taggtatctt caatttgttt aaagctttcg
     6481 gctcaaattc gcaaactatc tttgaagcgt tagcacaaat ggctagtaag ttccgcgctt
     6541 ggtcagagca agtcgctcag tcagatggat ttaaaaaatt tatagactat gtccaacaaa
     6601 atggcccgac tattatgagt ttaattggta atatcataat ggtattagtc aatttcggta
     6661 cagcgatggc acctattgcg agcgttgtac tgaatgtagt cactgcaatt actggttttg
     6721 ttgcaaagtt attcgagacg catccgatcg ttgctcaaat tattggtttg gcaattactt
     6781 ttggtggtgt cttaatgaca tggattccaa ttatcgttgg gattgtttcg tatttagctc
     6841 ctttaatagc tagatttggc tttttaaaga catcaatgct attactgagt agagttttca
     6901 ctttacttag tggcccaata ggaattgttt ccaaactgtt tcctatactt ggcgctgcaa
     6961 tcgggttttt aacttctcca atcggattag ttatcggtgc aattatcgca ttaattgcga
     7021 ttttcgttat tttgtggaac aaaaacgagg catttagaaa tttcatcatc aatttatgga
     7081 attcaattaa agatttcttt ataaatctgt ggacaacttt agcaacgata gcatctgttt
     7141 tatggcaatt attacttaca acaatcgtga atattgttat aagtatacaa acgtggttaa
     7201 caacaacatg gcaaaatata ctaacgtttt tatcaacttt atggaatacg ttaatcgtga
     7261 ttgcaacaac aatttggaat ttgcttgtga ctgttattgt aactgttatc actacgatac
     7321 taaccgttca acaaacgata tggaattcaa ttttaagttt tttacaaacg atatggaaca
     7381 ccgttgtttc ggtagcaaca actgtttgga acacattagt aactgttatc acaactgttt
     7441 taaatgctat aaattcattt gtaacaacaa tttggaatgc tatatacagt ttcttcgctt
     7501 caattttaag tagaatctca tctactgtaa gtcaaaaatt tagtgaagtt tatagatgga
     7561 tttcaacaaa aattcaacaa gcgtatagca ttttaagctc tattttatcg aacatgtggt
     7621 cggtcgtatc aagtaaattc agtcaaattg tgtctactgt aatttcaaaa atggtagaat
     7681 tttacaatgc cattaaacaa aaagtacagg attcgcttaa tgcggtagtc aattttgttg
     7741 gtgaatttat ggacgccggt aggaatctca taatgggatt agttaacgga gtgaaaaatg
     7801 cagcaggtgc cttaattgac gcggtaactg gcgcagttag tggtgctatt gataaagcga
     7861 aatctttatt aggtatcaaa tcgccttcac gtgtctttaa gcagattggt gtgtacacaa
     7921 tgcaaggttt aggaattggt gttgatcaag agggacaaaa tgcagttggt agcgttgtcg
     7981 acgtcgctag acaattaacg aaagcgttta atccagtttt aagtttgcct agcatatctg
     8041 atgctacaag tggtttaaat ggattatcag gattaagtgc aaacctcaca acacaaatcc
     8101 aacacacaca ttcgtttgaa actagcccta gaatgaaaac ggtaagaatt gaaatgagat
     8161 tagacaatga tgcaatttac ggcattgtta acgataaaca ggcagaaaaa cattcaatct
     8221 ttgaaatgta ggaggtatca taaatggaca ttaaaatcac gaaactagat ggtacttcct
     8281 accatttaga agattataaa atgattgtta aagacgtaat tgtagaaagt atagaaatga
     8341 aagatgatta tcaagattac gaaggcatgc acggcaggca tcttgtaagt agtttgtatc
     8401 attcacgtaa aatacatgta cccgtgttct ttgtggctga tgacaatcta gattacgcaa
     8461 tacaacgtaa tttgctgtat gagctagtac aagatgaaaa gccgttttat attcaagaat
     8521 tgcgtagaca cgacaaagta aactataaat ttaaaaacac tttggcaact gattatcaac
     8581 aagtagatga tcatggtata cctatttttg acgatgataa tcttcaagtg aacgctaaaa
     8641 ggtatctcgt taaactgtct aatgtgttga taccagaaca aaagaacaac atcggtaatg
     8701 tatcactaga atttgttacg acacatttgc cgtttgctga atcagttgaa acaagtttag
     8761 atttgcacaa gcaactaatc aatggctttt gggcgtctga tgatgacatc gattttgatg
     8821 acactgcaaa acaaacgtat atttttaata atgttaaagc gggtcaagtt tactatcacg
     8881 gtacagtccc taacaagcaa tttaacatgt acaaaaaggt cagaataaca ataggtaaag
     8941 cgacaaacga ttttcagtgg tcactttcag gaagtgactt aatgcgtgtg agtggcgttg
     9001 aatttaagtc tggtgatgtt ttagaatatg acggtttaag aatcactaaa aacggtcgct
     9061 cggttgttaa tgaatctaat attgcgttac cggttttctt gcctggcttt aacgaattta
     9121 gatttaacca aaatgtaaaa aaagccgaat ttgatatgcg attttatagt aagtaggtag
     9181 ataaagagat gattaaatta cgtaatatat taggcgaagc atattttctg caagtaccaa
     9241 cagaactcac agagcgtata agtggtgaaa gtcagttgac atttagcttt tcagaaaacg
     9301 aaagtaacag agaaattgta aatacgattt ctaaaaaatg gcaagtcact aatgttggtg
     9361 gtcaaaatga tgacaaaatc tatacggttg ctttagtttc taaagaatca aactcattaa
     9421 caacaagggt aactgtgcat tgcaaagaaa aacaaattga cgatttaaaa gcaaaacgca
     9481 tatacgacaa tttgactggt agctttaccg ctgaacgttt cttttcaact gtttttaaag
     9541 ggacgggata taaatacaaa ttagatgcta aagttaaagc attaaaattt gaaaatgcgg
     9601 gcgatggtga cactgtactt gagacctttc aaaaaggtct agaacgctat aatcttgaat
     9661 ttaaatatgt tccaaagaca aaaacattta tcttaactaa aaaggtcttt caaaaagcag
     9721 actattttat cgaaaacggt actaacgctt tgaattttaa gttagaagaa gattcttctg
     9781 agttttatac ttacattcgt ggttacggta actttgatga taatgtgaaa tttcaagaag
     9841 catcaatgca acttatctac caacatccat tagccgatga tataggtatt tatgaagcgc
     9901 ccgcaattat tgacggcaga attaaagatg aagagttttt acgtaacaag atgattaata
     9961 ctgttgataa ctcattaaaa acatctttga cattagactt tatcacatta caagaagaat
    10021 atgctgaagc ggttcctgtc gtgggtgacc tcgtacctgt taaagatgat attattgatg
    10081 tttttgactt tgttagaatc gtagaggtac aaactaaacg agacatcaac aataagattt
    10141 ttgaacaaaa tgccacgctt ggtgattata aaaagcagga taggtacaat tcgaaagtca
    10201 gcaatagcgt tagtcttgcg aatagtatca gtggcagttc tacagagatc agagaagcaa
    10261 aagataaaat aaaaggattt gtgtcagcag ctaacaatgt gttagacatg ggtaacgcgt
    10321 taagagctga ttcgaaaggt ataaagtcgg taaataaatt gttgaatact gtttttacac
    10381 ctgacaaagg catagtcatt agtaatgatg gtggaaagac ctttgtcact gcacttgatg
    10441 gcgatgggat aaatgttgat gttataccgg ttgcgacgac aacaaaaaac ggtttaatgt
    10501 cgaaagatga caaaataaaa ttagataatt tgaatggcgt aggctcaagt cgacttgggt
    10561 ctatttttta taaggaagtg aagtaataaa tggctgaaat tactaaggca aggacgttaa
    10621 catacgatgg cgaagaggtt tatgctagat cgcacattga tgttgttgac ggtttagata
    10681 aatcaaagtt attaactgac gagcaaaaac aaaaactaga aaactttaat gcggatgcaa
    10741 ttgatgttgc aacgccatcg aaaaatggtt tgatgtccgc gcaagacaaa actaaactgg
    10801 acagcttaaa acagttcaac cctgatacac tcacaaatgc gactactcaa aaagcgggct
    10861 taatgtcggc agaagataaa caaaagcttg atgaactgaa aacgaattca aacgagtatg
    10921 acaaagggat aagtggcggt agcgcttcaa atattattat agaaagcaat gtgaatcgat
    10981 ggccgaataa cactcaagtg gttaatttaa gtaaaaaagt aagtgagtgc aaaaatggtg
    11041 ttattttagt gtggcgttct gatacagaag atgattacta tcattatcag tatgttccga
    11101 aataccacgt ttcagcacat agcacaacaa aaattgtgca tttaatccct acaaactcag
    11161 caaatgagtt ttgtacaaaa acggttattg taaaagataa ctcgataaca ggtacagctg
    11221 acaatcataa cagagcaaca aacgctaata aagtacgatt gcatgaaatt ttagaatatt
    11281 aggaggtttg aaaatgaagt taaagttatc aaacgtgttt cgtgatttca aaaaagatgt
    11341 cgaaagtaat tttaaagaaa ttgataagtt actgactgag ttactcgaca tcaaaagtaa
    11401 aacaagtaat aaatatttgg acagtttgat tgatacactt tttactaaac gatatgatca
    11461 actgcaaaaa gaaatcagag ctattgtttt acctgaaatg tcccctcttg caattacaga
    11521 ggattatgaa aagagtttaa gtgatttaaa aggggagcga catacatcac tcaaatcacg
    11581 attagatgca gatttaaatc aaattaaaag tcaatctcaa aagactgcta atgatgatag
    11641 atttatcgtg actgaaaacg gtacaatctt tgctgatttt gttaaaaagt caaagacaat
    11701 caaaagtgtt aaaaaaattg ggattatcgg cgattctgtt gcaaaaggta gtagagctag
    11761 taaaaatttt ggtaaatacc tgtctgaaaa gttagttgct actgtacaga acgaagcggt
    11821 aagcggtgcg actatgtcaa cagtcaaggc taattccatt tatgaacaag cttcaaaaat
    11881 cagaaataag gatttagtta tcattcaagg tactgatgac gattggttat acaacggctc
    11941 gtcaggtgtt caaattggaa caagtaaaac aaatgaaaaa acgttttacg gtgcgttttg
    12001 taaaacagtt gaattgatta aatctaacaa tcctaaagct aagattcttg tgatgactgc
    12061 aacgcgtcaa ttgccggtta atggcacgac aattagacgt aaagacaccg ataagaatag
    12121 tctagggctt gatttagaag cgtatgtaaa tgcgcaagtg cttgcgtgtt cagaacttaa
    12181 tgtaccggtt tatgatgcat accacacaga cttattagat ccatataatc ctgctttcag
    12241 agttaaaaac atggtcgatg gattgcaccc gaacgagctc ggacacgaag taattacaca
    12301 tgaactgtta aaaaattact actattttta cggataagaa agaaggttaa ataatggcaa
    12361 atcaagactt attttacgat attactaagc aaggtacctc acaagaaaag caacaatact
    12421 tagtcacgcg tgttggtgac ggcggactta aaactgtaac aatcacagtg tggtcgaatg
    12481 gtacacctta caatcttcat ggtcttacac ctgttttcga aggcgttaaa ccagatggcg
    12541 aaaaaattat cgacacacgc ggtgctatcg tattagatcc tgtcaatggt gtatttcgat
    12601 acacattccc acatcaagca agcacagcgg aaggcgaata tagacaagcc ttttttaaac
    12661 tgaaacgtgg agagcaaacg gattcgacgc tagaagttaa aattaacgta ctaaaaaata
    12721 tggttgaatt tggtatcaat tccgaatcat attttacaga gtatcagcaa aaaattgctg
    12781 aattagaggg aaaaatcaat acgtatttag aagaattgaa aacaaaagca gcaggtacag
    12841 aagctcaagt tgaagcgaac gcaactttag caaaagcgtt aaaacagcaa ctagatttga
    12901 ttcaatccat cgcgaatgag cgtgaattac tgacaaaagg tgaatttaac gaggcgctca
    12961 atactgttaa taataatgtt gatgcaatta gttcaaaaat cgatacttta aaacgagaaa
    13021 ctactgaaga attagagcgt attaaagatg aagtgactgg agttaaaacg ggtgtgcttg
    13081 atgatgttgc taatattaca aaatcgggtg tgtactactt taacagtaca acgcaaaacg
    13141 taccgacgcg taattctaac aatgcaaatg gttatattga agctgtaatg aaagacgcga
    13201 acaacggtat gcttacgatg ttaggttcgg gttatgctat cgaaaagtac aatggcaagt
    13261 tacatggtcg ttgggtaact tcggtaccgg ttaagttgtg gtcaggtaag ctgactaaag
    13321 gacaaaccgc aacattgaac ggtaattgtc atgattttgg aaaactaatc attgaagtag
    13381 gctacacaac taatagacat gcagttgaat gggttaacat tccaaataac ggcagcacta
    13441 tttatatgaa tcatatcggt atgcaaagtt ccggcgacgg ttataaaaac ggccaccttg
    13501 atgaagttgt cattcaaatc aaagacgata cacatatcgt tttacaaaag actttaaaag
    13561 caacgggtga tgctcaagcg gtcgattcag acgcatatat ttctgctatc tacggcattt
    13621 attaataatg ctcgaaatct attaaggcgg tgtttgtttg gatgagataa agaaaattaa
    13681 acaagaaatt gctgatttaa ctgaacgtgt tgatagtata gagcagacag caaacgaagc
    13741 ggcctcacat gttgttagtc tgcgaaagga atacaggaat ggtcatcaag aattacaaga
    13801 atcacacaaa gaactcaaag acaaacaaga aaaagttgtt aatgaaaact ttgaacaaac
    13861 taaaattttg aatcgtattg aagagcgcta tcaaacgcaa gtcgaagttg ctcaaaacaa
    13921 cgaaggtaag acgctagctt tgaataagtg gctcgttggt gctatttggg cgttggtaac
    13981 aatcgttatg attgttgtta ttacagcgtc tatcaatgcg ttaattcctt aaggaggtgt
    14041 ttatatgagt tgggctaatt ggctagcatg ttacttatat ggacgcaaat gtaaataatt
    14101 tttgtgagtc ggcactttac gtgtcgactt attttttcga aagtgaagtg atgtcatggc
    14161 actgcctaaa acgggtaaac caacggcaaa acaggtggtt gactgggcaa tcaatttaat
    14221 cggcagtggt gtagatgtgg atggttatta tggtcgtcag tgttgggatt taccaaatta
    14281 catttttaat aggtattggg gttttaagac accaggcaac gcaagagata tggcatggta
    14341 tcgctatcct gcagggttca agatatataa aaacactact aactttgtcc ctaagccggg
    14401 cgatatggca atttggacag gtggtaacta caactggaac acatggggtc acacgggtat
    14461 tgttgtcggc ccatcaacca aagactattt ttatagtgta gatcagaact ggaataacgc
    14521 taactcatac gtcggtagtc ctgcagcaaa gataaagcat agttattttg gtgtaactca
    14581 ttttgttaga cctgcataca aatcggaacc taagcttaca cctataccac cagaaaataa
    14641 gcctataccg aaagaccctg agccgacaaa gaaacccgaa tcaaacaaac caatatataa
    14701 agtagtgaca aaaatcttgt ttactactgc gcgtatagag ctagtaaaag caaatcgctt
    14761 tgtacactac atcaccaaat cagataacca caataataaa cctaataaaa ttgttatcaa
    14821 aaacgcaaac acagcattgt ctacaaatga catttacaag tatcgagaag atttaaacga
    14881 agatgaaatt cctcactttt tcgtcgatag attaaatgtg tgggcgtgta gacctattga
    14941 ggaaagcgta caaggttata acaatgcaat agttttatcc attacagaag cgagaactgc
    15001 agtgagtgat aattttaaga tgaacgaaat cgaatgctta tcgttagcta agctattatt
    15061 agaggctaac ggtaaaaaga tgaacacaag ctctattgtt atcgataaaa gctcttggag
    15121 aacgttcaaa ttgcacactg gtaaagattc tttgaagtct agtggtttta cttctaaaga
    15181 ctatcaaaag gctgtcaacg agctgattaa gctatttaac gacaaagata agttattgaa
    15241 caataaacca aaagacgtcg tagaaaaaat aaggattaga acagttgtta aagaaaatac
    15301 aaaatttgtg cctagtgagt taaaacctag caataacatt aaggacaagc aagacagtaa
    15361 aattgataga atcattagca attacagctt aaaacaagct ttagatattc aatttagact
    15421 taatccgaag ccccaaactt caaatggtgc agcttggtat acagctagtt taaatcaagc
    15481 tagggaagcg atggacacta acaaaatctt taacaacaac gtacaagttt atcagttttt
    15541 gaagctgaat caatatcaag gaatttcagt tgataagtta aacaagttgc ttgtaggtaa
    15601 agggacttta cagaatcaag gtcaagcgtt tgctgatggt tgtaaaaagt acggcgttaa
    15661 tgaaatctat ctgattgcac acgcattttt agaaagtgct aatggtacat cattctttgc
    15721 gagtggtaga accggtgtat ataactattt cggcataggt gcttttgaca acaatccaaa
    15781 taacgcaatg gaattcgcac gcagtcatgg ctggacatca cctgctaaag cgattattgg
    15841 tggtgccgaa tttgttggga aagggtattt cgatgtaggt caaaatactt tgtatcgtat
    15901 gcgttggaat ccaaaaaaac caggcacaca tcagtatgcg accgatatta gttgggctaa
    15961 agttcaggcg aaaatgatta gtgcgatgta caaagagatt ggactaaaag gtgaatactt
    16021 tatttatgat caatacaaaa aataaaatta tggaggaatt ttaaatgatt aactggaaaa
    16081 tcagaataaa gcaaaaaaca ttttgggtgg cgatattatc agccatcttt ttatttgcac
    16141 aaagtatcgc taaagttttt ggatacgaca ttcaagttta tacagaacaa ctgacagata
    16201 cgttaaacag tgttttaggg attctagtct taatgggtgt tattcaagac ccgacaacac
    16261 aaggagttag cgatagtcat caagcactta attatgaaga accgagacaa aaatattgag
    16321 aggtgaaaga catgaaaaca tatagcgaag caagaagtcg tttacgatgg tacgtgggaa
    16381 gatatattga ttttgatggt tactgggcat accagtgcat ggacttagct gttgactaca
    16441 tttactggtt gctcgacatc agaatgtggg gtaatgctaa agatgcgatt aacaacgact
    16501 ttaaaaatat ggctacaatc tatgaaaata caccttcatt cgtcccacaa gtaggcgatg
    16561 tggcggtgtt tagaaacggt atttataagc aatacggtca cattggcatc gtatacaaca
    16621 gtggtaacac aaaccagttc ttaattttag agcaaaattt cgatggcaat gcaaacacgc
    16681 ccgcatcatt gagatgggac aattactatg gatgtacgca ttttatccgt cctcattaca
    16741 aaagcgagaa taccacttct aaaatcgcta ataaaatcag tccaccatca cataaagcgg
    16801 caggcaattc agctagtaag attatcagtg gaagtagagc gccgtataac ctcaaatggt
    16861 caaaaggtgc ttattttaat gcaaaagttg acggtttagg tgctacatcg gcaacacggt
    16921 atggtgatag ccgtgcaaat tatcgttttg acgtcggaca agccgaatat gtaccaggta
    16981 ctttaattta tgtttttgaa atcattaatg gttggtgtcg catctattgg aataatcata
    17041 acgaatggat ctggcatgaa agactgattg ttaaagaagt attctgataa caaaagtaaa
    17101 atatgatata ctat
//
LOCUS       DANHOL010000043        17013 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.043, whole genome shotgun sequence.
ACCESSION   DANHOL010000043 DANHOL010000000
VERSION     DANHOL010000043.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 17013)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17013)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17013
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.043"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            150..1034
                     /locus_tag="PTC08_001031"
     CDS             150..1034
                     /locus_tag="PTC08_001031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HDK5682545.1"
                     /translation="MMTQNNPTNRFYNEDFPKQYQPYPGIQNQMTPVPDCGEETYEGS
                     NKLVGKKALVTGGDSGIGRAAAIAYAKEGADVAIAYHPDEQADADEVKAVIEKAGQKA
                     VLLPGDLRDATYAKQMVKDAHEQLNGLDILVLNAGMQQFEHEIENLSAEQLTDTFEVN
                     VFSTVYSIQQALEYFETGASIILTSSIQGVKPSAHLVDYAMTKSCNISLTKSLAAQLG
                     PKGIRVNAVAPGPIWTALQISGGQPQESIPEFGQNQPLQRAGQPVELADVYVLLASDN
                     ASYITGQVYGITGGAPIN"
     gene            1261..2418
                     /locus_tag="PTC08_001032"
     CDS             1261..2418
                     /locus_tag="PTC08_001032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SidA/IucD/PvdA family monooxygenase"
                     /protein_id="HDK5682546.1"
                     /translation="MTYEWVIIGGGVHATTIALQLRQLGLPVEQLRMIDPHPHLLDQF
                     DRQTARIGMPYLRSPLVHHCHPEPFNLKKFAKQQGYTQPMIGPYQRPRLDMFFDHTRH
                     WIRHYGLETCHICQKAVHLCRCCEDWEITLDNQQQIRTQHVVLAMGTHHTPFIPPAFQ
                     DQPHVQHIHSLDLDTSMQGSHVVGSGISAGHLVIKLLTESPDKTVHLWMKKPFDVHHF
                     DADPAWLGPKNMKPFEAMPLAERIHVNKKERHKGSMPRDMYMTLKNYEKAGRLIVHHT
                     PIERLEDHCIVSGETRVAYDGIYLATGFVLDVMTQPLIQDILRLPEAQLVAGYPKTTT
                     QLEWVPRLYVSGMLADLALGPFARNIMGGRQAALRIGQAYTESTTAYQNAV"
     gene            2490..2885
                     /locus_tag="PTC08_001033"
     CDS             2490..2885
                     /locus_tag="PTC08_001033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682547.1"
                     /translation="MKKTKGEKPPKYRKINHRVMQVIFAFGMILLILFIGMGTVIPEL
                     NRHTYEGIIVEKYREDHGMTTGTTQFIELRQGDRTIKIENSDILLHGKWDSLAVQKDI
                     REGEKATVHTIGFDVPSLRIYPNLYQIEQ"
     gene            complement(3639..4769)
                     /locus_tag="PTC08_001034"
     CDS             complement(3639..4769)
                     /locus_tag="PTC08_001034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDK5682548.1"
                     /translation="MIKQHWAQKVVKKASSIIKAEVLITNRGGQIIATSNPDRVGEVH
                     QAARHSIERNLPIDIELEDMSFWNAQHPGVILPIELHGRVYGALLISGNPDEIRAYSH
                     LLKLHAEFIVEEELEHYSRFQETLSRTQMLAHILFNPDVYFQNYQRKSLIDRLGLNDE
                     FAVALISMQSSSKSKTSALRDALESLRLPGDEIVEISPQEYVYIVKSNPNRGKSHEEL
                     IDGFDKNVQNEVFDRTLITLGSFTTGIKGLVQSYHEARSLQSLLHDLKIQEGLHTYKS
                     HELATICNNIKKFTPENETTLVANYKKLLHLGEDKYLGETIEAYFRNHGKLVKTANDL
                     FIHRNTLNYRIKKIHEITGWDPNTIDGIVLLRIAQLLYEGSE"
     gene            complement(5548..6537)
                     /locus_tag="PTC08_001035"
     CDS             complement(5548..6537)
                     /locus_tag="PTC08_001035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative sulfate exporter family transporter"
                     /protein_id="HDK5682549.1"
                     /translation="MSKVKGLCLTFTIAIIATLLGHFFPIVGSAIFAMVIGMILNNTL
                     KLAESFKPGIQYSSKKVLHYSIILLGFTLSFQSIGTVGLKSLPILIVTLLVAFVVVTL
                     LVKLFHIDLDTGILIGVGTSICGGSAIAATSPVIKAKDNIIAFSLSTVFLFNLIAVII
                     FPPIGHFFHMSQEAFGFFSGTAINDTSSVVAASALYGSKALEVATIVKLTRTLFIIPI
                     TIGLAFWVAKRQQTTNDSGQRQNIWAMIPNFIIWFIVASLVSTIFNFSDGIIAIFKQA
                     ALFFITIALAGVGLSVKFSQFKQAGIRPILLGMMTWAALIVTSLIILAMIGML"
     gene            6771..8417
                     /locus_tag="PTC08_001036"
     CDS             6771..8417
                     /locus_tag="PTC08_001036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-keto acid decarboxylase family protein"
                     /protein_id="HDK5682550.1"
                     /translation="MMKKRIGQFLIDEIAKQGVDKIFGVPGDFNLTFLDDIEAHETLE
                     WVGNTNELNASYAADGYARLNGLAAMVTTFGVGELSAVNGIAGSYAENVPVIQITGAP
                     TTVVEQAGKYVHHSLGNGKFDDYQKMYAQITETQTVLTVDNALTEIPRIIKVATEEKR
                     PVHVHLPIDIAAKEIEVPDDVAYPATQKAENVSTVVEKLTERLKAAQQVTLIVGHQIN
                     SYGLQKDVQAIAEKLNLPVAQLSLGKGSFNEESAQYMGVYDGYIAEDNIRDYVDGSDL
                     VITLGAKLTDSATAGFSQKFSNDTIVTLNHRDVKVGDYTTTEPSLPEIVEAFKNIDFK
                     YGGDFPQYQWPDVSAAVYNDEPLTQENYFNLMQNFLRKGDVILGEQGTSFFGAYRLAL
                     QEGTTFIGQPLWGSIGYTLPSTLGTLLAAPERRHVLLIGDGSLQLTAQEMSTMVRQNL
                     NPVIFIINNDGYTVEKKIHGENAKYNDIQMWDYKLLPALFGNKDIPTYDVKTSNDLKV
                     AMDQIDQNPDTMHVVEVHMDVLDAPANLNEISKAFAAQNK"
     gene            9508..10911
                     /locus_tag="PTC08_001037"
     CDS             9508..10911
                     /locus_tag="PTC08_001037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component I"
                     /protein_id="HDK5682551.1"
                     /translation="MNIAYRVLDAPINPETLARHRQHKIVLESATTSQTKGRYSVVAF
                     DAYGEVILTESQLNILAPHQTIQETTAPFEQLKAFVGQYHAQISEPELEVLPFISGFV
                     GYCSFDLVRHAFPVLQQYPAAGTTHDVHFYMIESVYVFDHYKEQIYVIATNLFSKATE
                     HELYERLDEMIAEFNQIELFETTQVPDLPEKVIEPNIDEATFIAQVQQFKGRIQQGDM
                     FQVVPSRIYRYAHHFGEQLHPLTYQLYQKLKRNNPSPYMFYFNMGGPILVGSSPESFV
                     KVKSGKVMTNPIAGTIKRGTTDEEDQQLAETLLSDEKELSEHRMLVDLGRNDILRIAQ
                     PGSLELTKLMTIERYEHVMHIVSEVIGDVDPTLSPIDVIASLLPTGTVSGAPKLRAIQ
                     RIYETQPLKRGVYSGGVGYINCDHTLDLALAIRTMVIDETYVHAEAGCGVVYDSIPEK
                     ELAETQLKAKSLLEVTL"
     gene            10908..11492
                     /locus_tag="PTC08_001038"
     CDS             10908..11492
                     /locus_tag="PTC08_001038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate/anthranilate synthase
                     component II"
                     /protein_id="HDK5682552.1"
                     /translation="MILVIDNYDSFTYNLVDMFRLKEDVVVKYPDDDTLYDLQPDALV
                     ISPGPGHPDDTTRLHEIIEHFKGIPILGICLGAQALYRYYGGRVVVASKVMHGKIDTL
                     QFEKPTLLYKGISEHSDIMRYHSLICEEQSLPKGIHITGRTSDSIQSFEHRVRPHYGI
                     QYHPESFASIAVSGIVENFLTIVKKGVLPHDVTE"
     gene            11476..12480
                     /gene="trpD"
                     /locus_tag="PTC08_001039"
     CDS             11476..12480
                     /gene="trpD"
                     /locus_tag="PTC08_001039"
                     /EC_number="2.4.2.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate phosphoribosyltransferase"
                     /protein_id="HDK5682553.1"
                     /translation="MTLLNKMMNFEALNHEEMGAFIATLLSETTPLEDKVALLVAYTM
                     KGETSDELYALCESLIHTMYPEQPQYLGSMCVCGTGGDGSNSFNISTTVSFVAASGGI
                     EVVKHGNKSVTSQSGGMDILQAMGIATTPVQSVVQQLKDTHLAFVSATESYPVMKNMQ
                     PVRVKVGRPTILNLVGPIINPFALDYQSMGVFDPTRMIKIAEVLQRLGRKRAIVIHGA
                     NGMDEATLSGDNQIVEMDQRIGIREYTVNAADYGLRYAPDEALRGGTPEENKEITLNI
                     LNGTDQSVRRDVVLLNAGLAFYTAEIVDTIEAGIAHAVSCIDSGAAFKQYEQAGGVVV
                     "
     gene            12477..13256
                     /gene="trpC"
                     /locus_tag="PTC08_001040"
     CDS             12477..13256
                     /gene="trpC"
                     /locus_tag="PTC08_001040"
                     /EC_number="4.1.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="indole-3-glycerol phosphate synthase TrpC"
                     /protein_id="HDK5682554.1"
                     /translation="MTILDDIVEYKKQLLAEGYYETLLNNLEEVAVSHKRTVAEQFEN
                     DRTIGVIAEIKSKSPTVLDIPDRNLEEQLRLYTAGGASAISILTDEQYFGGSYERMAA
                     LTKQTDVPVLCKDFMIDERQIDVAKKAGASMILLIVNILTDEALARLHDYATALGLEV
                     LVEVHDRQELARAHRIRPQFVGVNNRDLRSFKTDVSHTGQILTSRHPGIHYISESGIK
                     TVSDIETLVPTRIAGVLIGETLMKANDPQAELQSFKLRKEV"
     gene            13258..13881
                     /locus_tag="PTC08_001041"
     CDS             13258..13881
                     /locus_tag="PTC08_001041"
                     /EC_number="5.3.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylanthranilate isomerase"
                     /protein_id="HDK5682555.1"
                     /translation="MYLKFCGFTQEEDIREAVQHDIQAVGFITYPKSARYVDLAQLQK
                     LTAHVPKTMDRVAVTVNTTMAQLEAIIEQTAINTIQFHGTESIDMIATVKARYPDIKL
                     FKAIPADEKLSDNIERYGNVVDRLLIDTPSSAFGGTGQVFDWRVLDTLSTSNCLVAGG
                     VNSENVRQLIQRHPNIAGIDIASGIEKAKGQKDHDKMAYIVKVLKGE"
     gene            13884..15089
                     /gene="trpB"
                     /locus_tag="PTC08_001042"
     CDS             13884..15089
                     /gene="trpB"
                     /locus_tag="PTC08_001042"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="HDK5682556.1"
                     /translation="MKNIQLEADEHGFFGEYGGKYVPETLMPAIEELKKAYDAAKQDP
                     EFQRDYHHYLKHYVGRETPLTYADSYTKALGGAKIYLKREDLNHTGAHKINNAIGQAL
                     LAKRMGKKKLVAETGAGQHGVASATIAALFDMELVVFMGEEDIRRQQLNVFRMELLGA
                     EVVPVTDGQGTLSDAVNKALQYWVAHVDDTHYLLGSALGPDPFPTMVRDFQRVIGDEI
                     KAQLQEKEGRLPNAVVACVGGGSNAIGTFYPFIEDASVKLYGVEAAGEGIDSERHALA
                     INKGKKGVLHGTKMYLIQDDNHQIKLAHSISAGLDYPGVGPEHSYYHDIGRVDYVTAD
                     DKEAMEALVRFTKAEGIIPAIESAHALSYVEKLAPQLDKDDILVVTVSGRGDKDMETI
                     KHYMEEKEA"
     gene            15092..15841
                     /locus_tag="PTC08_001043"
     CDS             15092..15841
                     /locus_tag="PTC08_001043"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit alpha"
                     /protein_id="HDK5682557.1"
                     /translation="MHAKQFVAYIMGGPEFIAQLKALDEVGADYVEIGIPFSDPVADG
                     PIIMEAGQAAIRAGMTAQKIFDQLKTVNGQLNTRYLLMTYYHTIETYGEAAFMAEAEA
                     AGVEGLIIPDMPFEYIEQLKARYPEQQLKFISLIAMTAAPERRQRIAQSAEGFIYTIT
                     MNQITGQNGNFHPELKQNILDIKQHSDVPVMAGFGIRTPEHVQEIIEVADGVIIGSEI
                     VRRFNEEGIEVTKQYLARVREALGKHRSTAQ"
     gene            15961..16671
                     /locus_tag="PTC08_001044"
     CDS             15961..16671
                     /locus_tag="PTC08_001044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HDK5682558.1"
                     /translation="MNKVMIFDLDDTLYDQLSGFEYAYYRHFGDTDIGVERLYRHFRL
                     YSEELFEATQTGALSVPDMHVVRITRAVADFDIELPEEKAHAFQRDYEYAQQHIKLST
                     TIVEMLQYLVQKNVKLGLLTNGESDRQRAKIKALGLDQYIPKSNMFVSAELGLSKPDP
                     AIFETVGKQMDVGASDAYFIGDHFDNDILGAMQVGWKAIWYNRRNRPQTDMTKQPTKT
                     VMTEKALFEAIQNIIESA"
BASE COUNT         5510 a         3050 c         3670 g         4783 t
ORIGIN      
        1 aagagtaaat ttaaattcag gttgagacgt tgaatataac aggagaatta aaagaaaatg
       61 cccagatttt tatatagcgt gttcaaaatg aatgtttctt tcaaggggat atcgggaatt
      121 ttagaagtaa actattgaaa aggagtttta taatgactca aaataatcca acaaaccgct
      181 tttacaatga agactttccg aaacaatatc aaccttatcc aggcatacaa aatcaaatga
      241 caccggtacc tgattgtggt gaagaaacat atgaaggttc gaacaaatta gtgggcaaaa
      301 aagcattagt gacaggtggc gactcaggta ttggtagagc agcggcgatt gcttatgcga
      361 aagaaggcgc ggatgttgct attgcttatc accctgacga acaagccgat gcggatgaag
      421 tgaaagccgt cattgagaaa gcaggtcaaa aagctgtctt gttaccaggt gacttacgag
      481 atgcaacata tgcgaaacaa atggttaaag atgcacatga acaactcaat ggtttagata
      541 ttctcgtatt aaatgcaggt atgcaacaat tcgaacatga aattgaaaac ttatctgctg
      601 aacaattgac ggatacgttt gaagtgaatg tgttctcaac agtttattca attcaacaag
      661 cgttagaata cttcgaaaca ggtgcgagta ttattttaac gtcatcgatt caaggtgtga
      721 aaccaagcgc acatttagtg gattatgcga tgaccaaatc atgtaacatt tcattaacta
      781 aaagtctcgc agcgcaacta ggacctaaag gcattcgtgt caatgctgtg gcgcctggcc
      841 caatttggac ggcgttgcaa atttcaggag gtcaaccgca agaaagtatc cctgaatttg
      901 gtcaaaatca accgttacag cgtgcaggtc agccagttga actcgcggat gtttatgtcc
      961 tgcttgcttc tgataacgca agctatatta cagggcaagt ttatggtatc actggtggtg
     1021 caccgattaa ttaatagaat gagagtgagt attaaaagag ttaggacgtt gagtaaatga
     1081 cgtcttagct cttttttagg ttgatgagta tcgcgatttt taaagaagac atattaaatg
     1141 taatgccttc ctttttataa ggaggaaatc cgacatatct ttttacgaaa atagttgatt
     1201 catacgtcaa agtcctttat tataaatcgt aatcattcct atatagaaag agtgaatcct
     1261 atgacatacg aatgggttat tatcggtggg ggtgtgcatg cgacaacgat tgcattacaa
     1321 ctccgacaac ttggattacc cgtggaacaa ctgagaatga ttgatccaca tcctcattta
     1381 ttagatcaat ttgatagaca aacagcgcgt atcgggatgc cttatttacg ttcgccatta
     1441 gtgcatcatt gtcatcctga accttttaat ttgaaaaaat tcgcgaaaca acaaggctat
     1501 acgcaaccga tgattggtcc gtatcaacgc ccaagattag atatgttttt cgaccataca
     1561 cgtcattgga tacgtcatta cggtttagag acatgtcata tttgtcaaaa ggcagtacac
     1621 ctatgccgtt gctgtgaaga ttgggaaatt acgttagaca atcagcaaca aattcgaaca
     1681 caacacgtcg ttttagctat gggtacacac catacgccgt ttattccacc tgcatttcaa
     1741 gatcaaccgc acgtgcaaca tattcatagt cttgacctcg atacctcaat gcaaggttct
     1801 catgtagtcg gaagtgggat ttcggcaggg catctcgtta ttaaattgct cacagaaagt
     1861 ccagataaaa ctgttcattt atggatgaag aagccttttg atgtccatca cttcgatgcg
     1921 gatccagcgt ggttaggtcc gaaaaatatg aagccttttg aagcgatgcc gttagccgaa
     1981 agaatacacg ttaacaaaaa agaacgtcat aaagggtcta tgccgagaga tatgtatatg
     2041 acattgaaaa attatgaaaa agcgggtcgt ttgatcgtgc atcatacgcc tatcgagcga
     2101 ctagaagacc attgtatcgt ttccggagag acgcgcgtgg catacgatgg catttattta
     2161 gcgacgggct ttgttcttga tgtgatgaca cagccactca ttcaagatat tttacgacta
     2221 cctgaagcac aactcgtcgc aggttatccg aaaactacaa cacagctgga gtgggtgcct
     2281 cgtttatacg tttcaggcat gttagctgac ttggcactag gtccttttgc ccgtaatatt
     2341 atgggtggtc ggcaagcggc gttacgtatc ggtcaagcgt ataccgaaag tacaacagct
     2401 tatcagaacg cagtctaatc atgattttgt aatcgcacta tgaaatgatt cgcatatccg
     2461 atataatgcg agtgatagga gcgataacta tgaaaaaaac taaaggcgaa aaacctccaa
     2521 aatatcgaaa aatcaatcat cgtgtgatgc aggttatctt tgcatttggt atgatcttac
     2581 tcattttatt tattggtatg ggcactgtga ttccagaact taaccgtcac acgtatgaag
     2641 gtatcatcgt agaaaaatat agagaagatc atggaatgac gacaggcaca acacagttta
     2701 ttgaactgag acaaggcgat cgtacgatta agattgagaa cagtgatatt ttattacatg
     2761 gcaaatggga tagtctggcg gtacaaaaag acattcgtga aggtgagaag gcgaccgtgc
     2821 atacgattgg atttgacgta cccagtcttc gcatctatcc gaacttgtat caaattgagc
     2881 aataaccatt ttttaaatga gacacaaaaa agtagagact aggacatgat gttttcccag
     2941 tctctgcttc tatttatgga ttgatatcca ttaatggtga ttaaaccgtt gaaaaataag
     3001 ggtgtatgta aaaaacgatg cgatcgtttt cttgatttca tcaacttgca agcagttgtg
     3061 cagtatttga aatatgattg cccagaaggc tgagacgcct gagggataag ttaaaggcta
     3121 aacaacgtca tttaacttta aaagtggcta ccgtttaacg tagtggctgt ctgacttctc
     3181 aatgcgcatg attttgagaa gtcgagtcag ccttgcgggg gtagtacgac gaaagctttg
     3241 ttacacatga gatttctgta ctgctcccaa aatccacaat gaatgggtgc gctgggaatc
     3301 aataaacggt gttccaaaag caggattttc gacagaaccc ccgcgatttc ggcaaaattt
     3361 ggaaagcaat tttgctcatc gctcggttct gctcaaatcc taagcgcttt tgtcacaacc
     3421 tcccttcatc ccctaggaaa gggaagcctt gatggcaatc aaaaaccgaa aatcgtaagg
     3481 agggcaagtt taacaaaata ttgcatcaat cgcatcaaaa gtttttatgt cccgccccct
     3541 acctttttat ggacttttat tcattatgat gataacatcg gcgaaaaatg aggggggatg
     3601 ggataaaaat tttatgtctt aacctcatgt ttttaaattt attctgaacc ttcataaagc
     3661 aactgtgcaa ttcttaataa cacaatccca tcaattgtat tcggatccca acctgtaatt
     3721 tcatggattt ttttaatacg ataattcaat gtattccgat gaataaacaa atcattcgca
     3781 gttttgacta acttcccgtg gtttctaaaa taagcttcaa tcgtttctcc taagtacttg
     3841 tcttccccta aatgcagtag tttcttataa tttgcgacca atgtcgtttc attttctggt
     3901 gtgaattttt taatattatt acaaatcgtt gcaagttcat gtgatttata agtatgaagc
     3961 ccttcttgaa tttttaaatc gtgcaatagg gactgcaacg aacgcgcttc atgataggac
     4021 tgaactaaac ctttgatacc cgttgtaaat gaacccagtg taattaatgt acggtcaaat
     4081 acttcatttt gtacattttt atcgaaacca tcaattaatt cttcatgaga tttaccgcga
     4141 ttagggttag atttgacgat ataaacgtat tcttgtggcg aaatttcgac aatctcatcc
     4201 cctggtaatc tcaatgattc taatgcatca cgtaaagctg acgttttgga tttactcgaa
     4261 ctttgcatag aaataagcgc aacggcaaat tcatcattta agcctaagcg atcgatcaaa
     4321 cttttgcgtt ggtaattttg aaagtaaacg tcaggattga ataaaatatg tgccaacatt
     4381 tgtgtgcgtg acaatgtttc ttgaaaacga gagtagtgtt ctaactcttc ttcaacgata
     4441 aattcggcat gaagttttaa taaatgtgaa taagcacgta tttcatcagg attgccactg
     4501 ataagtaggg caccgtaaac tcttccatgt agttcgatag gaagaataac accaggatgt
     4561 tgcgcgttcc aaaaagacat atcttctaat tcaatatcga tgggcaggtt acgttcaatc
     4621 gagtggcgcg cagcttgatg tacttcacct acacgatcag ggttagatgt tgcgataatt
     4681 tgaccacccc gattcgtaat cagtacttca gctttaatga tagatgacgc tttttttacg
     4741 actttttgag cccaatgttg ttttatcatt tactccagct cctatttttt atatgtattc
     4801 taaataaagg taaagcagtt cccttttgtt gaatagtaga atggacatca gaagttgagt
     4861 cggcctgttg gatttgtcac acgaaccctt ttgattgcat cgtctcatga ctggcaaaat
     4921 accaacactt cctagattgt attgaaaggg ctgttgtcat acatgttgag aaagggcaat
     4981 cttcatatca tagcgtgttt ccaaaacgaa caacagaaaa aatagaatat aatttttttg
     5041 ttctgttacg cttgattttt cactgaatga tattaaatgt gtatatcata tcatagaatg
     5101 aatggattgt aataggttta ccgaaacctt ttctttaagt tttttttgaa ctttgttaac
     5161 tttgatttac aatgtaaagg tgcaattcaa tcactcttgt tttagtgtta actgtacttt
     5221 tataataaaa cactttttac tttttatgca aatttatatc taattacctt agaagttata
     5281 tattattaat ttaacaatat agttatgatg gctagtaaaa agttgtgata ttttatatta
     5341 taacaataac aattaaattt taaagtagga taagaaaatt tttcttcttt aaactgattt
     5401 gttaaaaagt gtgtgatttt tagtgttaaa aaaagatgca tatgtttaag aatggcgtga
     5461 aatcaacgtt tgttgtttga tggagaaaat gaaaaagaag ggaggcccgt cgtgcgaatg
     5521 cacagtatgt ctccctatag agtaatttta taacatgccg atcattgcta aaatgatcaa
     5581 acttgtcaca attaaagcag cccaagtcat catccctaac aagatagggc gaatacctgc
     5641 ttgcttaaat tggctaaatt tgactgataa cccaaccccc gcaagtgcaa ttgtaatgaa
     5701 aaacagtgcc gcttgtttga aaatcgcaat gataccatca gaaaaattaa aaatggtact
     5761 aaccagtgat gcaacaataa accaaataat aaagttcgga atcatcgccc atatattttg
     5821 acgttggcca ctgtcatttg ttgtttgttg acgtttagcc acccaaaacg ccagaccaat
     5881 cgtgatagga ataataaaaa gtgtacgtgt taatttaaca atggtcgcga cttcaagtgc
     5941 ctttgaacca tataacgcac ttgctgctac gacactagat gtatcgttaa tcgctgtccc
     6001 actgaaaaaa ccaaatgctt cttgactcat atgaaaaaag tggcctatcg gagggaaaat
     6061 aatgaccgca attaagttaa ataaaaacac tgtagaaagg ctaaaagcga taatattgtc
     6121 tttagcttta atgactgggc ttgttgcggc aatagcagag cccccacaaa tagaggtacc
     6181 gacgccgatt aaaattcctg tatctaaatc aatatgaaat aacttgacta acaatgtgac
     6241 cacaacaaag gcaacgagta gcgtcacaat gagtatcggt aatgacttga ggcctactgt
     6301 tccgattgat tgaaaactca atgtaaaacc gagcaaaatg atgctgtaat gcaatacttt
     6361 tttactgcta tattgaatac cgggtttgaa tgattcagct agttttaacg tattattcaa
     6421 aatcataccg atgaccattg caaaaatcgc actacctaca attggaaaaa agtgacctaa
     6481 gagggtagcg ataatagcaa tagtgaacgt taggcataat ccttttactt ttgacatagt
     6541 catcgatcct ttcgtgaaat gacatcgtaa catgtgaaca tgacgtatat ttttgcgcta
     6601 agtttaacaa agtggcaatc gtacaagcca tcctcgtttg ttctcaagta taggcgtatc
     6661 agaatcgttt ttcaatagtc attgacagtt ataggtcaat aatgttgact ttattatcgc
     6721 gggcgtataa aatgtaaatt gtaatcaata aagagaaaaa ggacgggatg atgatgaaaa
     6781 aacgtattgg acaatttttg atagatgaaa tcgcaaaaca aggcgttgat aaaatttttg
     6841 gtgttcctgg tgatttcaat ttaacttttt tagatgatat tgaagcacat gagacgttag
     6901 aatgggttgg taatacgaat gaattgaatg caagttatgc tgcagacggt tatgcacgtt
     6961 tgaacggact tgcagctatg gtaacaactt ttggtgtcgg tgaattaagt gcagtcaacg
     7021 gcattgcggg ttcatacgca gaaaatgtac ccgtgataca aattacaggc gcaccgacga
     7081 cagtagttga acaagccggc aaatatgtgc accattcttt aggtaacggc aaatttgatg
     7141 actatcaaaa aatgtatgca caaattactg aaacacaaac agtattaact gtagacaatg
     7201 cattaacaga aatcccgcgt atcattaaag tagcaacaga agaaaaacgt ccggtacatg
     7261 tccacttacc aattgacatc gcagcaaaag aaatcgaagt accagatgac gtcgcatatc
     7321 ctgcaactca aaaagcagaa aacgtttcaa ctgtagtaga aaaattaaca gaacgattaa
     7381 aagccgcaca acaagtgacg ttaattgtcg gacatcaaat caatagttac ggtttacaaa
     7441 aagatgttca agcaattgca gaaaaattaa acttacctgt agcacaattg tcactcggta
     7501 aaggctcatt taatgaagaa agtgcgcaat atatgggggt atacgacggt tatatcgcag
     7561 aagacaatat ccgtgattat gtcgatggta gcgatttggt cattacttta ggcgctaaat
     7621 tgacagactc agcaacagca ggattctcac aaaaattctc aaatgatacg attgtaactt
     7681 tgaatcatcg cgacgttaaa gtaggcgact atacaacaac tgaaccgtca ttacctgaaa
     7741 ttgtagaagc gttcaaaaat attgatttca aatatggagg cgactttcca caatatcaat
     7801 ggccagatgt atccgcagca gtatataacg atgaaccatt aacacaagaa aactatttca
     7861 acttaatgca aaacttttta cgtaaaggtg acgttatatt aggcgagcaa ggaacatcat
     7921 tctttggtgc ataccgctta gcacttcaag aaggcacgac atttatcggc caacctttat
     7981 ggggctcaat cggttatacg ctcccatcaa cattaggtac attacttgca gcaccagaac
     8041 gtcgtcatgt attactcatt ggtgacggct cattacaatt aacggcacaa gaaatgtcta
     8101 caatggtacg tcaaaactta aatccagtca tctttattat taacaatgac ggttatacag
     8161 ttgagaaaaa gattcatggt gaaaatgcca aatacaatga cattcaaatg tgggactata
     8221 aattattacc agcattattt ggcaacaaag acatcccaac atatgacgtc aaaacatcca
     8281 atgacttaaa agtagcaatg gatcaaatcg atcaaaaccc tgatacgatg catgttgttg
     8341 aagttcacat ggatgtatta gatgcaccag cgaacctaaa cgaaatttct aaagccttcg
     8401 ctgcacaaaa caaataatct gttgtagagg gcaaaatttt atggttgaca tgaaattgaa
     8461 atgcatgtat agtgttggat aacttcataa aacgtatggt tgataagtag tttttacgaa
     8521 tgtagcacgc agaaagctaa cggttgatgc aagttagcac aaacgtagag atgaattggg
     8581 caatcgcaat atacgaccaa ttgaattgta atcaaaagag cgaacatggt atagaaattc
     8641 atgttaacta aggtggcacc acggtaacgc gtccttacag aagagacgtc tactgtggtg
     8701 ttttttagtt tttgtcggct atctaaaagt atctcaaagc cattaatgac gtccgtttcg
     8761 ttgaggtgag gcgcctcgta aagtgagtca aagtgaagca ataacttaga ttgtgtggag
     8821 gtgggtttgg gacatagaaa atttcaagcc tcaatccatt cataggttga tggttcatta
     8881 atgactttag aacagtcgga aagtgatgga gaatgggata gaaaaaattg atgctattgg
     8941 ctttcttgat ttcataaact tgccctcagt ttcgctgtat ttcatataag attgtccaga
     9001 gggctgagac tcctgaggga tcagctggtc cggaaaatcc aattcggcat ccatctagtg
     9061 tacacttcaa tcaagccgaa tttagttgaa gggccagccc ctaggaaagc gaagccacta
     9121 tggcaatcaa aagcaaaatt cgtagggaga gggcaagttc aacaaaaata cttcatcaat
     9181 agcatgaaaa attttaatgt cccatctcca aaaattaaag aaatgcctta taaacggaac
     9241 aaagtgagtc gtgttccttt caaccgaaac aaacaattgt gaggtaagaa aaagtagttt
     9301 gaacaatcgg tagttccaga aaatagacgg ctgatgcgag tctataccga cctcaagtga
     9361 attgggtctt acttgaagca accaactgaa tcataactta aagcgaacag tgacaatact
     9421 gttaacaaag gtggtaccgc gcgtgagcgt cctttcggag gacaatcatg cgcttttttt
     9481 agtgccgaaa attgaaggag gagccctatg aacattgcct atcgcgtttt agatgcaccg
     9541 atcaatccag aaacattagc acgacatcgt caacataaaa ttgtattaga aagtgccaca
     9601 acatcgcaaa caaaggggcg atattctgtt gtcgcttttg atgcttatgg ggaagtcatt
     9661 ttaacagaat cacaattaaa tattttggcc ccgcatcaaa cgattcaaga aacgactgca
     9721 ccgtttgaac aattgaaagc ttttgtaggg caatatcacg cacagatttc tgaaccagag
     9781 cttgaggtat tacctttcat ttcaggcttt gtcggttatt gtagttttga tttagtccga
     9841 cacgcgtttc cagtgctaca acaatatccg gcagcaggta caacgcatga tgttcatttt
     9901 tatatgattg aatcggtata tgtatttgac cattataaag aacaaattta cgtgattgcg
     9961 acaaacctct tttctaaagc gacggaacat gaattatatg agcgtctaga tgagatgatt
    10021 gcggaattca atcaaattga gttgtttgaa acgacgcaag tacctgattt acctgaaaaa
    10081 gtgattgagc cgaatattga tgaggcaacg tttattgcac aagtacagca atttaaagga
    10141 cgtattcaac aaggtgatat gttccaagtc gtcccatcac gcatttatcg ttatgcacat
    10201 cattttggtg aacaattgca tccattgacg tatcagttat atcaaaaatt gaaaaggaac
    10261 aatccaagcc cttatatgtt ttattttaat atgggtggtc ctattttagt ggggagttct
    10321 cctgaaagtt ttgtgaaagt caagtcaggc aaagtgatga cgaatcctat tgcaggaacc
    10381 attaaacgcg gcaccactga tgaggaagat caacaattgg cagaaacctt gttaagtgat
    10441 gaaaaagagt tgagtgaaca tcggatgctc gttgacttag gacgtaacga tattttacgt
    10501 attgctcaac caggaagttt ggaattgacg aaattgatga cgatagaacg ttacgaacat
    10561 gttatgcata ttgtcagtga agttattggt gatgtggacc caacactttc tcctattgat
    10621 gtcattgcga gtttattacc gactggaacg gtatcaggtg cgccgaaatt acgtgcgatt
    10681 caacgtattt atgaaacgca acctttaaaa cgtggtgttt atagtggtgg cgtcggttat
    10741 attaattgcg accatacgtt agatttagca ctcgcgattc gaacgatggt cattgatgag
    10801 acctatgtgc atgctgaagc ggggtgtggt gttgtctatg attcgattcc agagaaagaa
    10861 ttggcagaaa cacaattgaa agcaaaaagt ttattggagg tcacgctatg attttagtca
    10921 ttgataatta tgattcgttt acgtataacc tcgtcgatat gtttcggtta aaggaagacg
    10981 ttgtggtgaa gtatccggat gacgacacat tgtatgacct tcaaccagat gcacttgtta
    11041 tttcgccagg tccaggacat cccgatgata cgacgcgact ccatgagatt atcgagcatt
    11101 ttaaaggtat accgatttta ggaatttgtc tcggtgcaca agcattgtat cggtattatg
    11161 gaggccgagt cgtcgtcgcg tcgaaggtca tgcatggcaa aattgatacg ttacaatttg
    11221 aaaagccgac actgttatat aaagggattt cagaacattc tgatattatg cgctatcact
    11281 cgctcatttg tgaagaacag tcgttaccta aaggaatcca tattaccggt agaacaagtg
    11341 acagtattca atcgtttgaa catcgagtcc gaccgcatta tggcattcaa tatcatccgg
    11401 aatcattcgc aagtatcgcg gtatcgggca ttgtagaaaa ctttttaaca atcgtaaaga
    11461 aaggtgtgtt gccacatgac gttactgaat aaaatgatga actttgaagc actcaatcat
    11521 gaagaaatgg gcgcgtttat agcgacgtta ttatctgaaa cgacgccatt agaagataaa
    11581 gtcgcattac ttgtcgctta tacgatgaaa ggtgaaacat cagacgaatt gtatgcgtta
    11641 tgtgaaagct tgattcatac gatgtaccct gaacaaccgc aatatctagg cagtatgtgt
    11701 gtctgcggga caggtggcga tggctcgaat agtttcaata tctccacaac cgtatcattt
    11761 gtggcggcaa gtggtggtat tgaagttgtt aaacatggta ataaaagcgt cacatcacag
    11821 tcagggggca tggatatttt acaagcgatg ggcatagcga cgacccctgt acaatctgtg
    11881 gtgcaacagt taaaagatac acatttggct tttgttagtg cgacagaatc ttaccctgtg
    11941 atgaaaaata tgcagccggt ccgcgtgaaa gtgggacgtc caacgatttt aaaccttgtc
    12001 ggcccgatca ttaatccgtt tgcgttagat tatcagtcga tgggggtgtt tgatccgacg
    12061 agaatgataa aaattgctga agtgttacag cgattaggcc gtaaaagagc tattgtcatt
    12121 catggggcga atggcatgga tgaagcgacg ttatcgggtg acaatcaaat cgttgaaatg
    12181 gaccaaagga tagggattcg tgaatataca gtcaatgcgg cagattatgg attgcgttat
    12241 gcaccagatg aagcgcttcg aggtgggacg ccagaagaaa ataaggaaat aacactaaac
    12301 attttaaatg gaacggatca atctgtaagg agagacgtcg tgttacttaa tgcaggactt
    12361 gcgttttaca cagcggaaat tgtcgacacg attgaagcag ggatcgccca tgcagtgtca
    12421 tgtattgatt caggcgctgc attcaaacaa tatgaacaag caggaggtgt agtcgtatga
    12481 cgattttaga tgacattgtc gaatataaaa agcagttact cgctgaaggt tactatgaaa
    12541 cgttattgaa caatttagaa gaagtagctg tgtcacacaa acggactgta gcggaacaat
    12601 ttgaaaatga ccgtacaatc ggcgtgatcg cggaaattaa gtcaaaaagc ccgaccgttt
    12661 tagatatacc ggaccgtaat ttagaggaac aattgcgatt gtatacagca ggaggcgcat
    12721 cagcgatatc gattttaacg gatgaacaat attttggggg cagttatgaa cggatggcag
    12781 ccttgacaaa acagacggat gtgccggtac tctgtaaaga ctttatgatt gatgagcgac
    12841 aaatcgatgt ggcgaaaaaa gcaggggcgt ctatgatttt actcatcgtc aacattttaa
    12901 cagatgaagc attggcgcga ttacatgatt atgcgacagc tctcggatta gaagtgcttg
    12961 tggaagtcca tgaccgacaa gaactggcac gagcacatcg tattcgaccg caatttgttg
    13021 gtgtaaacaa ccgtgatttg agaagtttta agactgatgt cagtcatacc ggacaaattt
    13081 taacttcacg acacccgggt atacattaca tttcagaaag tggcattaag acggtgtcgg
    13141 atatcgaaac gcttgtacca actaggattg caggcgtact gatcggtgaa acattgatga
    13201 aagcgaatga tccacaagca gaactccaaa gctttaaatt gcgtaaagag gtgtaacatg
    13261 tatttgaaat tttgcggatt tacacaagaa gaagacatcc gagaagcagt ccagcacgat
    13321 atacaagcag tcggatttat cacgtatccc aaaagtgcac gctacgttga tttagcgcaa
    13381 ctgcaaaaac taactgcgca cgttcctaaa acgatggatc gcgtggcagt gactgtgaac
    13441 acaacgatgg cacaactaga agccatcatc gaacaaactg ctattaatac gatacagttc
    13501 catggtaccg aatcaataga catgattgct acagtgaagg cgcgctatcc tgacataaaa
    13561 ttgtttaaag cgattcctgc cgatgaaaaa ttgtcggaca acatcgaacg ttatggaaat
    13621 gttgttgatc gactgttaat tgatacaccg tctagcgctt ttggaggcac aggacaagta
    13681 tttgattggc gtgtgttgga tacgttgtcg acgtcgaatt gtttggtggc aggtggcgtc
    13741 aacagtgaga atgtacggca gttaatccaa cgtcacccga atatcgcggg tattgacatt
    13801 gcaagtggca ttgaaaaggc aaaaggccaa aaagatcatg acaaaatggc atatattgta
    13861 aaagttttga aaggagaatg acaatgaaaa acattcaatt agaagcagat gaacatggat
    13921 ttttcggaga gtacgggggc aaatacgtac ccgaaacgct catgccagct atcgaagaat
    13981 tgaaaaaggc ttatgatgcg gcgaaacaag atcctgaatt tcaacgtgac tatcatcatt
    14041 atttaaaaca ttacgttgga cgcgaaacgc cgcttacgta tgccgattct tacacgaaag
    14101 cattaggtgg cgcgaaaatt tatttgaaac gtgaagattt gaatcatacg ggggcacata
    14161 aaattaataa cgcgattggt caagctttac tcgcgaaacg catgggtaag aagaagcttg
    14221 tcgctgaaac tggcgcaggt caacatggtg tcgcaagtgc aacaattgca gcgttattcg
    14281 atatggaact cgttgtattt atgggggaag aagatatccg tcgtcaacaa ctcaatgtct
    14341 ttcggatgga gttactcggg gcggaagtcg tacctgtgac tgacggacaa gggacgttat
    14401 cagatgcggt gaataaagca cttcaatatt gggtcgcaca tgtcgatgat acacattact
    14461 tacttggttc agcgctcgga ccggacccat ttccgacgat ggtgcgcgat tttcaacgtg
    14521 tcattggtga tgaaatcaaa gcacaacttc aagaaaaaga agggcgttta ccgaatgccg
    14581 tcgtcgcgtg tgtcggtggt ggttccaatg caatcggtac gttctatcca tttattgaag
    14641 atgcatcagt gaagttgtat ggcgtggaag cagcagggga aggtatcgat tcagaacgac
    14701 atgctttagc aattaataaa ggaaaaaaag gtgtactcca tggaacgaaa atgtatttaa
    14761 ttcaagatga caaccatcaa attaaattgg cacattctat ttcagcaggc ctcgattatc
    14821 cgggtgtggg ccctgagcat agttattacc atgacatagg gcgcgtcgat tatgtcactg
    14881 ctgacgataa agaagcgatg gaagcactcg tacgtttcac aaaagcagaa gggattattc
    14941 cagcaattga aagtgctcat gctttaagtt atgttgaaaa gctcgcacca caattggata
    15001 aagatgacat tctcgtcgta acagtgtcag gtcgtggtga taaagatatg gaaacaatta
    15061 aacattatat ggaagaaaag gaggcgtaac gatgcatgcg aaacaatttg tagcgtacat
    15121 tatgggtggt ccagagttta tagcacaatt gaaagcatta gatgaagttg gcgcggatta
    15181 tgttgaaatt ggtatcccat tttctgatcc tgtcgcggat ggtcccatca ttatggaagc
    15241 aggacaggcg gcgattcgag cagggatgac ggcccagaaa atttttgatc agctgaaaac
    15301 agtgaacggt cagctcaaca cacgttattt actgatgacg tattatcata cgattgaaac
    15361 ttatggagaa gcggcattta tggctgaagc agaagcggcc ggtgtagaag ggctcatcat
    15421 tccggatatg ccgtttgaat atatcgaaca attgaaagcc cgttatccag agcaacagtt
    15481 gaaattcatc tcactaatcg cgatgactgc tgcacctgaa cgacgtcaac gcatcgctca
    15541 atccgctgaa ggatttattt atacgatcac aatgaatcaa attacaggtc aaaacggcaa
    15601 tttccaccct gaattgaagc aaaatatttt agatattaaa caacatagtg atgtgccggt
    15661 gatggccgga tttggtattc gtacacctga acatgttcaa gaaatcatcg aagtggctga
    15721 tggtgtcatt atcggaagtg aaatcgttcg ccgttttaat gaagaaggca ttgaagtaac
    15781 gaaacaatat ttagcgaggg ttcgtgaagc acttggtaag catcgttcaa ctgcacagta
    15841 atttgtcata tcagtgtgaa gttcaaacgc tattcattca ggcacccccg ttatataata
    15901 agtgtcagta taaaaatgat acttgtaggg gtaagtttta aaataaagag gtgctgaaca
    15961 atgaataaag tgatgatttt tgatttagac gatacgttat atgatcaact ttcaggtttt
    16021 gaatatgctt attaccgtca ttttggtgat acggatatcg gtgtagaaag gctttatcgt
    16081 cattttcgtt tatatagtga agaattattc gaagcgacac aaacaggcgc attgtcggtg
    16141 ccggacatgc atgttgtacg catcacacgt gcagtggcgg actttgatat cgagttgcct
    16201 gaagagaaag cacatgcctt tcaacgtgat tacgaatatg cgcaacaaca tatcaaattg
    16261 tcaactacga ttgttgaaat gttacagtat ttagttcaaa aaaacgtcaa attaggttta
    16321 ttgacaaatg gggagtcaga ccgtcagcgt gccaaaataa aagctttagg actcgatcaa
    16381 tatattccaa aatccaatat gtttgtctca gcggaactgg gcttatcgaa accagatcca
    16441 gccatatttg aaacagtggg caaacagatg gatgtcggtg cgagtgacgc atactttatc
    16501 ggtgatcatt ttgacaacga cattttaggt gcaatgcaag tcggttggaa ggctatctgg
    16561 tacaatcgcc gcaatcgccc gcaaactgat atgactaaac agccgacaaa aacagtgatg
    16621 acggaaaaag cattgtttga agcgattcaa aatatcatag aaagtgcata atatgaaagc
    16681 atgtggaagg attaacgttt ctttcacatg catttttaaa tttgtaatta ataagtcaat
    16741 cttaagtagg ctaatatgaa atctagcgag tcaatattca ttgccaagtg tggtgtacta
    16801 acaaggtaaa agtagttgta agcacacgaa cgaaagcaaa tggaacgaat ctagaaatag
    16861 gataaagagt acaagaaatt aaaaaaaaaa tatatataaa acgcataaaa tgacaaagta
    16921 tattactgcg gttcagtggg gtggtatctt ttttgtgaca ttaagaaaat caataaatta
    16981 tacataaaat taatagttct gaaacatcac tgt
//
LOCUS       DANHOL010000044        16965 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.044, whole genome shotgun sequence.
ACCESSION   DANHOL010000044 DANHOL010000000
VERSION     DANHOL010000044.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 16965)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16965)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16965
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.044"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            16..501
                     /gene="lspA"
                     /locus_tag="PTC08_001045"
     CDS             16..501
                     /gene="lspA"
                     /locus_tag="PTC08_001045"
                     /EC_number="3.4.23.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase II"
                     /protein_id="HDK5682559.1"
                     /translation="MKQQYYIGLSLFITLIILIGDQLTKFIIRTQMTLGESFAVVPKF
                     LYITSHRNNGAAWGILSGKMTFFYIITIIVLIALIVFYIKEAKNNMLMQIAISLLFSG
                     ALGNFIDRVSSGEVVDFIDTVIFGYDFPIFNIADASLTIGVVLLIIVLLKDQNQKGKV
                     S"
     gene            501..1418
                     /locus_tag="PTC08_001046"
     CDS             501..1418
                     /locus_tag="PTC08_001046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HDK5682560.1"
                     /translation="MEKHIFNIEDATHHLQRIDKILPEFNSEWSRSQLQEWIKEGLIE
                     VNGKAVKSNYKLKLGDRIEITEKEVVEADIQAENLNLDIYYEDDDVAIVYKPKGMVVH
                     PSPGHYTGTLVNGLMYQIKNLSGINGEIRPGIVHRIDKDTSGLLMVAKNDVAHRSLVE
                     QLMAKTVKRKYIALVHGHIPHEFGTIDAPIGRNKNDRQSMAVVDDGKEAVTHFNVIET
                     FKNYTLVECELETGRTHQIRVHMKYIGYPLVGDPKYGPKKTLEIGGQALHAGLIGFEH
                     PKTGEYIERFAPLPAEFEAVIEQVRKEDI"
     gene            1704..2228
                     /gene="pyrR"
                     /locus_tag="PTC08_001047"
     CDS             1704..2228
                     /gene="pyrR"
                     /locus_tag="PTC08_001047"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional pyr operon transcriptional
                     regulator/uracil phosphoribosyltransferase PyrR"
                     /protein_id="HDK5682561.1"
                     /translation="MVERVVLDESAIKRTVTRIAHEILEYNKGTENLVLLGIKTRGEY
                     LAQRIQQKIQQIEEVQIPTGAIDITSFRDDIDSRQQQDAPGFNIDTDLNHQVVIIVDD
                     VLYTGRTVRASLDAILLHARPKKIGLATLVDRGHRELPIRADFVGKNIPTSHEESVNV
                     YLEEIDDRNAVVIT"
     gene            2406..3698
                     /locus_tag="PTC08_001048"
     CDS             2406..3698
                     /locus_tag="PTC08_001048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil permease"
                     /protein_id="HDK5682562.1"
                     /translation="MENEQMFMRTVQPVLDVNEKPKAGQWVFLSLQHLFAMFGATVLV
                     PFLTGLPVSSALLASGVGTLLYILITKGKIPAYLGSSFAFITPIITGLSTNSLGDMLV
                     ALFMSGVMYVIIGVAIKVSGTDWLMHLLPPVVVGPVIMVIGLSLAPTAVNMAMFESSA
                     EMKGYNLSFVAVAGITLLVTLIVQGFAKGFFSLIPVLIGIIVGYITAIVFGIVDFKPV
                     AEAAWFQFPDIYIPFADYQPSVHLGLIAVMLPIVFVTVSEHIGHQMVINKIVGRNFFK
                     DPGLHRSIIGDGVSTMFSSIIGGPPSTTYGENIGVLAITKIYSIYVIGGAAVIAIMLG
                     FVGKFTALISSIPTPVMGGVSILLFGTIAASGLRMIVESQVNFAQNRNLVIASVILVI
                     GIGNMMLNLSDLGVHLTIEGMALSATAGILLNLILPKS"
     gene            3720..4598
                     /locus_tag="PTC08_001049"
     CDS             3720..4598
                     /locus_tag="PTC08_001049"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase catalytic
                     subunit"
                     /protein_id="HDK5682563.1"
                     /translation="MQHLVSMEHLAVEEIENLIQKAMQYKAGEAVPNLKGRYIANLFF
                     ENSTRTKCSFEMAEHRLDMKQINFESSASSVQKGESLYDTCRTLQSIGCDALVIRHEQ
                     NHYYEPLLNMGIPIINAGDGSGQHPTQSLLDLMTIYETYGRFEGLKVVICGDIKNSRV
                     ARSNYHSLTALGAKVVFSSPDVWKDDSMAADYVELDDVIDEVDIVMLLRVQHERHAGV
                     SQGFEKEEYHRRYGLTEERYATLQDHAIVMHPAPVNRDVEIADTLVEAPKSRIFEQMS
                     NGVYIRMAVLTEILNG"
     gene            4614..5888
                     /locus_tag="PTC08_001050"
     CDS             4614..5888
                     /locus_tag="PTC08_001050"
                     /EC_number="3.5.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotase"
                     /protein_id="HDK5682564.1"
                     /translation="MKLIQNAKMLEAGTLKKVDVLIEGKTVKQIAETIEPTEDMTVID
                     AKGHFLAPGFIDVHVHLREPGGEYKETIETGTKAAARGGFTTVCPMPNTKPVPDSLEH
                     LTQLNELIDKNAQVRVLPYASITVRQAGKEHVDFKALAENGAFAFTDDGVGVQKAAMM
                     YEAMQQAKAQNKAVVAHCEDNSLIYGGAMHEGRRSQELGIPGIPNICESVQIGRDVLL
                     SEATGCHYHVCHVSTKESVRVIRDAKKAGIPVTAEVTPHHLLLTEDDVPGDHAIYKMN
                     PPLRSQEDRAALLEGLLDGTIDCIATDHAPHAADEKAQPMTRAPFGIVGSETAFPLLY
                     THFVKNGDWSLQQLVDYLTTKPAEVFGLPYGKLAEGALADLTLINLDDAYEIKAEDFL
                     SKASNTPFLGETVYGNPILTMVEGNIRYEEAK"
     gene            5891..6991
                     /locus_tag="PTC08_001051"
     CDS             5891..6991
                     /locus_tag="PTC08_001051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl phosphate synthase small subunit"
                     /protein_id="HDK5682565.1"
                     /translation="MFEERYLVLEDGSHYTGFKLGSDKLTRGEIVFNTAMTGYQETIS
                     DPSYTGQIITFTYPLIGNYGINHDDFESLTPSLNGVVVKEACTMPSNFRAQKSFDDVL
                     KEYDIPGISGVDTRSITKKIRQHGVLKAAFVDDPSEIETTVTALKTAEFPRTEVPTVS
                     TKTPYVSTGFDLRVVLVDFGKKQNIVRELNARGCEVTVVPYDTSADTIIKMAPDGVML
                     SNGPGDPDDVTVALDMINGILGRIPFFGICLGHQLFALSQGAKSFKMKFGHRGANHPV
                     KDLATGKIALTSQNHGYAIDADSVAATDLEITHIALNDGTVEGLKHRTLPAFSVQYHP
                     EACPGPTDSNYLFDQFVEMMQQNKQKERVTHA"
     gene            6984..10157
                     /gene="carB"
                     /locus_tag="PTC08_001052"
     CDS             6984..10157
                     /gene="carB"
                     /locus_tag="PTC08_001052"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HDK5682566.1"
                     /translation="MPKRNDIQTILVIGSGPIIIGQAAEFDYAGTQACLALKEEGYRV
                     ILVNSNPATIMTDKEIADKVYIEPLTHDFIARIIRKEQPDALLPTLGGQTGLNMAIEL
                     HNSGVLAENNVTLLGTKLSSIEQAEDRELFRSLMNDLNVPVPESDIVNTLEQAFAFKE
                     AVGYPLIVRPAFTMGGTGGGICHNDEELREVVSNGLKYSPATQCLIEKSIAGFKEIEY
                     EVMRDKNDNAIVVCNMENIDPVGIHTGDSVVVAPSQTLSDVEYQMLRDVSLKVIRALE
                     IEGGCNVQLALDPHSMQFYIIEVNPRVSRSSALASKATGYPIAKLAAKIAVGLTLDEM
                     KNPVTGTSYAAFEPSLDYIVSKIPRFPFDKFEKGERELGTQMKATGEVMSIGRTYEES
                     LLKAIRSLEYGVHHLGLPNGESFDLEYIKARIQAQDDERLFFIGEAIRRGTTLEELHE
                     MTKIDYFFLNKFKNIIDMEHALKAHPGDIDYLRFAKRFGFSDRVIAHRFEMTEAEVYK
                     LRQQHNICPVYKMVDTCAAEFESTTPYFYGTYEEENESLVTEKEKIIVLGSGPIRIGQ
                     GVEFDYATVHAVWAIQNAGYEAIIINNNPETVSTDFSISDKLYFEPLTEEDVMNIINL
                     EQPKGVVVQFGGQTAINLADKLAKYGVKILGTSLEDLNRAEDRKEFEALLNKIDVPQP
                     KGKTATSAQEALDNARDIGYPVVVRPSYVLGGRAMEIVYNDAELENYMNEAVKASPEH
                     PVLVDRYLTGKEIEVDAISDGETVMIPGIMEHIERAGVHSGDSIAVYPPQTLSQDVID
                     TLEAYTIKLAKGLNVIGLINIQFVLAHDGVYVLEVNPRASRTVPFLSKITEIQMAQLA
                     MQAIIGQKLTALGYQPGIQPYKEGVFVKAPVFSFNKLKNVDITLGPEMKSTGEVMGRD
                     ITLEKALYKGLTAAGMEVKDYGTALITVSDKDKEEMVKIAKRLSEVGYKILATAGTAA
                     TLKDHGINVETVGKIGGHDDLITKIQDGSVQLVINTMTKGKTIERDGFQIRRTSVENG
                     VPCLTSLDTANALTNVIESMTFSMRNM"
     gene            10171..10935
                     /locus_tag="PTC08_001053"
     CDS             10171..10935
                     /locus_tag="PTC08_001053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotate dehydrogenase electron transfer
                     subunit"
                     /protein_id="HDK5682567.1"
                     /translation="MEKLTVVSNAPIAERIYELTVKGPVVEKLQQPGQFVHIKAGEGS
                     LHMLRRPISICHIDQAQQQFTMLFRAEGEGTKRIAALNEGDEIDILAPLGNGFPVDKA
                     KKKALLVGGGIGVPPLYELSKQLNERGIETVHVLGFRSAKDVFYQQQFEALGETHIVT
                     EDGSLGTTGFVTTVIDALPVDYDIFYTCGPLPMLKALTQLETLKDVPGYISLEERMGC
                     GVGACFACVCHVPESPTDYVKVCTDGPVFERGAVVL"
     gene            10932..11852
                     /locus_tag="PTC08_001054"
     CDS             10932..11852
                     /locus_tag="PTC08_001054"
                     /EC_number="1.3.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020220102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotate dehydrogenase"
                     /protein_id="HDK5682568.1"
                     /translation="MSRLAVKIPGLSLKNPIMPASGCFAFGAEYGQFYDLSELGAIMI
                     KAATKEARFGNETPRVAETDSGMLNAIGLQNPGVHHIIDHELKALAQHDVPIIANVAG
                     SMEEDYVYVAEHISKAPNVKALELNISCPNVKEGGMQFGVDPTIASELTRKVKAVSEV
                     PVYVKLSPNVTNIVEMAEAIAQYADGLTMINTLVGMRIDARTGKPIIYNVTGGLSGPA
                     IKPVALRMVHDVRKALPDIPIIAMGGVQNAQDVIDYVSVGADAVAVGTANFQNPMVCK
                     EIIDTLPEYLDALNVHRISELKGRTLKGLQ"
     gene            11854..12558
                     /gene="pyrF"
                     /locus_tag="PTC08_001055"
     CDS             11854..12558
                     /gene="pyrF"
                     /locus_tag="PTC08_001055"
                     /EC_number="4.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine-5'-phosphate decarboxylase"
                     /protein_id="HDK5682569.1"
                     /translation="MRQDPIIALDFATEAEVMSFLAQFDEPLFVKIGMELFYQTGPAL
                     IDQIKALGHDIFLDLKLHDIPNTVGKAMEGLAKLNVDLVNVHAAGGTVMMQRAVEGLR
                     RHNKAIKIIAVTQLTSTSEQQLHEEQNIQTSMETAVLNYASLAQQAGLDGVVCSPLET
                     TMIREHCGDDFLKVTPGIRLANSAKDDQQRITTPEKARQLGSTHIVVGRPITQSDNPV
                     QSYHQIKESWLNACQN"
     gene            12546..13154
                     /locus_tag="PTC08_001056"
     CDS             12546..13154
                     /locus_tag="PTC08_001056"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HDK5682570.1"
                     /translation="MSKLIAKALLDIEAVSLSPNEMYTWSSGIQSPIYCDNRVTLGYP
                     EVRTAIRDGLIELIEQHFADVEIVSGTATAGIPHAAYISDKMNLPMNYVRSKSKSHGK
                     QNQIEGARSEGKKVVVIEDLISTGGSSITAVEALQEAGAEVLGVVAIFTYGLNKAGET
                     FKAAGVPFYTLSNYDELIEVAREEDQISEDDIQTLVEWRNQL"
     gene            13589..14002
                     /locus_tag="PTC08_001057"
     CDS             13589..14002
                     /locus_tag="PTC08_001057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HDK5682571.1"
                     /translation="MKIPKITTFLMFNGDAEEAIQRYTSLFEDSEIITMVKYDDTIPE
                     QAGKVQHSIFTLNGQVFMAIDNMNGTDIEMNPAMSLYVTVKDQFEMDTLYHGLKDGGA
                     ILMPKTAMPPQFREFAWVQDKFGVNFQLALPESKK"
     gene            complement(14086..15789)
                     /locus_tag="PTC08_001058"
     CDS             complement(14086..15789)
                     /locus_tag="PTC08_001058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NFACT family protein"
                     /protein_id="HDK5682572.1"
                     /translation="MAFDGMFTRKMVEDLQFLVSGRIHKINQPENDTIIMVIRQQRQN
                     HHLLLSIHPNFARIHLTTKKYDNPFEPPMFARVFRKHLEGGRILAIRQIGNDRRIEMD
                     VESKDEIGDTIHRTVILEIMGKHSNLILVNEERKILEGFKHLTPNTNQFRTVMPGFQY
                     EVPPTQHKQNPYAYTGAQVLQHIDFNAGKIDRQLLQTFEGFSPLITKEITSRRHFMTT
                     QTLPEAFDEVMAETKATPQPVFHKNNETGKEDFYFMKLHQFYDDCVTYDSLHELLDRF
                     YDARGERERVKQRANDLVKLVQQLLQKYQNKLSKLVDEQAGTEEKENQQLYGELITAN
                     IYQLKPGDRQLETVNYYTGENVTIPLNPQKSPAENAQYYYKQYNRMKTRERELTHQIT
                     LTEENIAYFENIEQQLSHIQVHEIDDIREELAEQGFIKQKKKQKKKKQQKIQLQSYVS
                     TDGDTILVGKNNKQNDYLTNKRAQKSHLWFHTKDIPGSHVVILNDVPSDKTIEEAAMI
                     AAYFSKAGQSGQIPVDYTTIRNVHKPSGSKPGFVTYDNQKTLYATPDYDMIRRLKAEE
                     A"
     gene            15949..16572
                     /gene="gmk"
                     /locus_tag="PTC08_001059"
     CDS             15949..16572
                     /gene="gmk"
                     /locus_tag="PTC08_001059"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HDK5682573.1"
                     /translation="MDTEKGLLIVLSGPSGVGKGTVRKRIFDDPHTSYKYSISMTTRQ
                     MREGEQDGVDYFFKTREEFEKLIEADEFIEYAEYVGNYYGTPVQYVKDTMNAGHDVFL
                     EIEVEGAKQVRKKFPDALFIFLAPPSLDHLTERLIGRGTESKEKIESRVKEAKKEVEM
                     MNLYDYVVVNDEVDLAKDRIQSIVEAEHLKRERIEAKYRKMLLEAKK"
     gene            16572..16781
                     /locus_tag="PTC08_001060"
     CDS             16572..16781
                     /locus_tag="PTC08_001060"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit omega"
                     /protein_id="HDK5682574.1"
                     /translation="MLYPPLHHLQDKINSKYLIATTAAKRARELQADPDHLLLDRYES
                     KKTVGRALEEIAASKIHPHVDESHF"
BASE COUNT         5393 a         3105 c         3686 g         4781 t
ORIGIN      
        1 gaaaggacaa aaagtatgaa acaacaatat tacattggcc tatcgctctt tattacatta
       61 atcatcttga taggcgacca actgactaaa tttattatcc gtacacaaat gacgttgggt
      121 gagtcatttg cagtagttcc aaaattttta tacattactt ctcatcgcaa taatggggcc
      181 gcttggggta tactaagtgg gaagatgaca ttcttctata ttattacgat aatcgtttta
      241 attgcgctca ttgtctttta tattaaagaa gcgaaaaata atatgctgat gcaaattgcg
      301 ataagcctgt tgttttcggg cgcgttaggt aattttattg atcgtgtcag tagcggtgaa
      361 gtggtggact ttatagatac agtcattttc ggttatgatt ttcctatttt taatattgca
      421 gatgcgagtt tgacaatagg tgtggtcttg ttgattattg tattattaaa agatcagaat
      481 caaaaaggta aggtgtcgta atggaaaaac atatatttaa tattgaagac gcaacgcatc
      541 atttacagcg tattgacaaa atattgcctg aattcaattc ggagtggtca cgcagtcaat
      601 tacaagagtg gattaaagaa ggattaattg aagttaatgg taaagctgtc aagtcgaact
      661 ataaactaaa attaggtgac cgtatagaaa tcactgaaaa agaagtggta gaagcagata
      721 ttcaagcaga gaacttaaat ttagacattt actacgaaga tgacgacgtg gcgattgttt
      781 ataaacctaa aggcatggtc gttcacccat cgccagggca ttatactggg acgcttgtaa
      841 atggtttaat gtatcaaatc aaaaatttat caggtattaa cggtgaaatt cgtccaggta
      901 tcgtgcaccg tatcgataaa gatacttcag ggttactgat ggttgcgaaa aatgacgtgg
      961 cacatcgcag tttagttgaa caattgatgg caaaaactgt gaaaagaaag tatattgcgc
     1021 tcgtacatgg ccatattcca catgagtttg gaacgattga tgcacctatc ggacgcaata
     1081 aaaatgaccg tcaatcgatg gctgtcgttg atgacggtaa agaagctgtg acgcatttta
     1141 atgtcattga aacgtttaaa aactatacat tggttgaatg cgaactagaa acaggacgta
     1201 cgcaccaaat tcgtgtgcat atgaagtata tcggttatcc gcttgtaggc gatccgaaat
     1261 atggtccgaa aaagacgtta gaaataggcg gacaagcttt acatgcgggt cttatcggtt
     1321 ttgaacatcc taaaacaggg gaatacattg aacgttttgc gccgcttcct gcagaatttg
     1381 aagctgtcat tgaacaagtg cgtaaagaag atatttaagt aaaattttaa aaaatagcca
     1441 gatttgcttt gacttttggt gttaaaaacg ttaccataag aacaagttaa aaacgaataa
     1501 aaactgaatc gtctttaaga gggagtccag tgaggctcaa aagacatgat atcaatcatt
     1561 caatttagag aactatcata tagatactgc attgtacgta cgagagacgt aatgggacag
     1621 tttttgatag tctatcatat taaattgctt aaaactcatg tctacttaaa gacatgagtt
     1681 tttttacgta aggagtgaaa ggattggttg aacgcgttgt attagacgaa tctgctatca
     1741 aacgcacagt aacacgtatt gcccatgaaa tattggaata caataaaggc acagaaaacc
     1801 ttgtattact cggtattaag acgcgcggtg agtatttagc gcaacgtata caacaaaaga
     1861 ttcaacagat tgaagaggtc caaatcccaa caggagcaat cgatattaca agttttagag
     1921 atgatatcga ttcgcggcaa caacaagatg caccaggatt taacatcgac actgatttga
     1981 atcatcaagt ggttattatt gtggacgatg tgctttatac tggacgtaca gtacgtgctt
     2041 cacttgatgc gattttactt catgcgagac cgaaaaagat tggtttagcg acactcgtgg
     2101 atcgtggtca tcgagagcta ccgattcgtg cagattttgt agggaaaaat attccaacgt
     2161 ctcatgaaga atctgtcaat gtttacctag aagaaataga cgatcgcaat gcggttgtca
     2221 tcacataatg acacctttta attcagtacg agagactgac aaaggtataa ttgcaaatag
     2281 agccaatgac gtacgatgtc ggccgccgat tatagtcggt gtatgtgtgt atatctgttt
     2341 gtaatcacct cagtctctta ccttaattgg tgaagaggct ttttttataa gaaaggaaga
     2401 aaacaatgga aaatgaacaa atgtttatga gaacggttca accggtactc gatgtgaatg
     2461 aaaaaccaaa agcggggcaa tgggtatttt taagccttca acatttattt gcgatgttcg
     2521 gtgcaacagt attagtaccg tttttaacag gcttacctgt atcatcagcg ttactcgcat
     2581 caggagtagg aacattactc tacatcttga ttacaaaagg gaagattcca gcgtatctcg
     2641 gttcaagttt tgcgtttatc acaccgatta ttaccggttt aagtacgaat agcttaggtg
     2701 atatgctcgt tgcattattc atgagtggtg ttatgtacgt tatcatcggg gttgcgatca
     2761 aagtgagtgg cacagactgg ctcatgcatt tattaccacc tgtcgttgtc ggtccagtca
     2821 ttatggtgat tggtttaagt ttagcaccga ctgctgtcaa catggcgatg tttgaaagtt
     2881 cagctgagat gaaagggtac aatttaagct ttgtagccgt ggcagggatt accttacttg
     2941 tgacattgat tgttcaagga tttgcgaaag gctttttctc gctcattcca gtgttaatcg
     3001 gtatcatcgt cggctacatt acagcgatag tgtttggcat tgtagatttc aaacctgtcg
     3061 cagaggccgc ttggttccag ttcccagata tttacattcc atttgcagat tatcaacctt
     3121 ccgtgcatct cggattaatt gcagtgatgc tcccaatcgt gtttgtaacg gtgagtgaac
     3181 atatcggaca ccaaatggtc atcaacaaaa tcgtcggccg taacttcttt aaagatccgg
     3241 gactacaccg ctccatcatc ggtgacgggg tatcgacaat gttttcaagt atcatcgggg
     3301 ggccaccgag tacgacttat ggtgaaaata tcggtgtact cgcgattacg aaaatttaca
     3361 gtatttacgt cataggcggt gcggcagtta tcgccattat gcttggcttt gttgggaaat
     3421 tcacagcact gatttcatct atccctacac cagtaatggg tggtgtgtct atcttattat
     3481 tcgggactat cgcggcaagt ggcttacgta tgattgtcga aagtcaagtc aactttgcgc
     3541 aaaaccgtaa cttagtcatc gcgtcagtca ttctcgtcat cggtatcggt aacatgatgt
     3601 tgaatttatc tgatttaggt gtacatctca caattgaagg gatggcatta tcagcaacag
     3661 cagggatttt actgaactta attttaccaa aaagttaatt ataggaggcc ttgattatta
     3721 tgcaacatct cgtatcaatg gaacatttag ctgtagaaga aattgaaaac ttaattcaaa
     3781 aagcgatgca gtataaagca ggagaagcgg taccgaattt gaaaggacgt tacattgcga
     3841 acttgttttt cgaaaattcg acacgtacga aatgtagttt tgaaatggca gaacaccgtt
     3901 tggatatgaa gcaaatcaac tttgaatcaa gtgcctcttc tgtacaaaaa ggggaatcgc
     3961 tgtatgacac atgccgaaca ttacaaagca ttggctgtga tgcacttgtc atccgacacg
     4021 aacaaaatca ttactacgaa cccttgttga atatggggat tccgattatt aatgcagggg
     4081 atggcagtgg ccagcatccg acgcaaagct tattggactt aatgacgatt tacgaaacat
     4141 atggtcgttt tgaaggacta aaagtggtca tttgcggtga cattaaaaac tcacgagtgg
     4201 cacgtagtaa ttaccatagt ttaactgcac ttggtgcaaa ggtcgttttc tcaagtcctg
     4261 acgtttggaa agatgacagc atggctgcag attacgttga attagatgat gtgattgacg
     4321 aggtcgacat tgtaatgtta ttacgtgtcc aacatgaacg acatgcaggc gtttcacaag
     4381 gttttgaaaa agaagaatat caccgtcgtt atggtttgac tgaagaacga tatgccacac
     4441 ttcaagatca tgcgattgtg atgcaccccg caccagtaaa tcgcgatgta gaaattgcag
     4501 atacattagt agaagcaccg aagtcacgta tttttgaaca gatgtcaaat ggtgtgtaca
     4561 taagaatggc agtattaact gaaattttaa atggttaagg agcgattagg atgatgaaat
     4621 taattcaaaa tgcaaagatg ttagaagcag gtacgttgaa aaaagttgat gtattaatcg
     4681 aaggcaagac agtgaaacag attgcagaaa cgattgaacc aactgaagac atgacagtca
     4741 ttgatgcaaa aggtcacttt ttagcgccag gttttatcga tgtccatgtg catttgagag
     4801 agccaggtgg cgaatataaa gaaacgattg aaacaggcac caaagcagcg gcacgtggag
     4861 gttttacaac ggtttgtcct atgccaaata cgaaacctgt tcctgattcg ttggaacatt
     4921 taacacagct gaatgaatta attgacaaaa atgcacaagt tcgtgtccta ccgtatgcct
     4981 ctattacagt acgtcaagca ggaaaagagc atgtcgattt caaagcgtta gctgaaaatg
     5041 gcgcatttgc attcacagat gatggggtcg gtgttcaaaa agcggcgatg atgtatgaag
     5101 cgatgcaaca agcgaaggca caaaataaag cagtcgttgc acactgcgaa gataatagtc
     5161 ttatctatgg tggtgccatg catgaaggcc gccgcagtca agagcttggc attccaggta
     5221 ttccaaatat ttgtgaatcg gtacaaatcg ggcgtgacgt gttactgagt gaagcaacag
     5281 gatgtcatta tcacgtgtgc cacgtatcaa cgaaagaaag cgtgcgtgtc attcgtgatg
     5341 cgaaaaaagc aggtattcca gtgacagcgg aagtgacgcc acaccattta ttactgacag
     5401 aagatgatgt gccaggagat catgcgattt ataaaatgaa tccgccttta agaagtcaag
     5461 aagatagagc ggcgttatta gaaggcttac ttgacggtac gattgactgt attgcgacag
     5521 accacgcacc acatgcagca gacgaaaaag cacaaccgat gacacgtgca ccattcggca
     5581 ttgtcggcag tgaaacagca ttcccattac tttatacaca ctttgtgaaa aatggggatt
     5641 ggtcattaca acaactcgtt gattacttga caacaaaacc agctgaagtg ttcggtctcc
     5701 cttatggcaa gttagcagag ggtgcacttg cagatttaac attaatcaac ttagacgatg
     5761 cgtacgaaat taaagcagaa gatttcttat caaaagcgtc taacacacca ttcttaggtg
     5821 aaacagtata cggtaatcct attttaacta tggttgaagg caacattcgt tacgaggagg
     5881 caaaataaac atgtttgagg aacgttacct tgttttagaa gatggttcac attatacagg
     5941 ttttaagtta ggatctgaca aattaacacg cggtgaaatt gtattcaaca ctgcaatgac
     6001 aggttatcaa gaaaccattt ctgacccctc atatacaggc caaatcatta catttacgta
     6061 tcctttaatc ggtaattacg gcattaacca cgatgacttt gaatcactta caccaagcct
     6121 taatggtgtc gtcgtgaaag aagcgtgcac aatgccgagt aactttagag cacagaaatc
     6181 atttgacgat gtattgaaag aatatgatat tccaggtatt agtggcgtgg atacgcgcag
     6241 catcacgaaa aaaattcgtc aacatggtgt gctcaaagca gcatttgtcg atgatccatc
     6301 agaaattgaa acaactgtga cagcactcaa aacagcagaa tttccaagaa ctgaagtgcc
     6361 aactgtctct acgaaaacgc cttacgtctc aacaggattt gacttgcgcg ttgtacttgt
     6421 ggacttcgga aagaagcaaa atattgtccg tgaattgaat gcacgtggct gtgaggtaac
     6481 ggtcgtacca tatgacactt ctgcagatac aattattaaa atggcgccag acggtgtcat
     6541 gttatcaaat ggtcctggtg atccggatga cgtgacagtt gcacttgata tgattaacgg
     6601 tattttaggg cgcattccat ttttcggcat ttgtcttggt catcaacttt ttgcgctcag
     6661 tcaaggtgcg aaatcgttca agatgaaatt cggacataga ggtgccaacc accctgttaa
     6721 agatttggcg acaggtaaaa tcgcactcac aagtcaaaac cacggttatg caatcgacgc
     6781 ggattctgtg gctgcaacag atttagaaat tacacatatc gccttaaatg atggcacggt
     6841 tgaaggcttg aaacaccgta cgttaccagc attttcggta caataccatc cagaagcttg
     6901 cccaggtcca acagattcta attacttatt tgatcaattt gtagaaatga tgcaacaaaa
     6961 taagcaaaag gagcgcgtta cacatgccta aaagaaatga tattcaaacg attttagtga
     7021 ttggctcagg tcctatcatc attggtcaag cagcagaatt tgactatgca gggacacaag
     7081 catgtctcgc actcaaagaa gaaggttacc gtgtcatttt agttaactca aaccctgcga
     7141 cgattatgac ggataaagaa attgctgaca aagtttacat cgaaccgctc acacacgatt
     7201 ttattgcacg cattatccgt aaagaacaac cggatgcact tttaccgacg ctcggtggac
     7261 aaacagggct caacatggcg atcgaattac ataatagtgg ggtcttagct gaaaataacg
     7321 tcacactgct cggtacgaaa ttgtcatcta ttgaacaagc agaagaccgt gaattgttcc
     7381 gctcgttaat gaatgacttg aatgtgccag tacctgaaag tgacattgtg aatacacttg
     7441 aacaagcctt tgcatttaaa gaagcagtcg gttatccgtt aatcgtacgt ccagcattta
     7501 cgatgggcgg tacagggggc ggcatttgtc ataatgatga agaactccgt gaagtcgttt
     7561 ctaacggatt aaaatatagt ccggctacgc aatgtttaat tgaaaagtcg atcgcaggct
     7621 ttaaagaaat tgaatatgaa gtgatgcgtg acaaaaatga taacgcgatt gtcgtatgta
     7681 acatggaaaa cattgatcca gtcggtattc atacgggtga ctcagtcgtt gttgcaccaa
     7741 gtcaaacatt gtcagacgtg gaatatcaaa tgttgcgtga cgtgtcatta aaagtcattc
     7801 gtgcactaga aattgaaggg ggatgtaacg tacagctcgc cttggatccg cattccatgc
     7861 agttttacat tatagaagtg aatccgcgcg tatcccgttc gtcggcactc gcttcaaaag
     7921 caacagggta tccgattgcg aaactcgctg cgaaaattgc ggtaggtctg actctagatg
     7981 agatgaaaaa tccagttact ggcacatctt acgcggcatt cgaaccaagt ttagactata
     8041 tcgtatcgaa aatcccacgt tttccattcg ataagttcga aaaaggtgaa cgcgaactcg
     8101 gtacacaaat gaaagcgaca ggggaagtca tgtcgattgg tcgcacgtac gaagaatctt
     8161 tattaaaagc aattcgttct ttagaatacg gcgtgcatca tcttggctta cctaatggtg
     8221 aatcttttga cttagagtac attaaggcac gtattcaagc gcaagatgat gaaagattgt
     8281 tcttcattgg tgaagcgatt cgtcgtggca caacacttga agaattacat gaaatgacga
     8341 aaatcgatta cttcttctta aataaattca aaaatattat cgatatggaa catgcattga
     8401 aggcacatcc aggcgatatt gattacttaa gatttgcaaa acgttttggt tttagcgacc
     8461 gcgtcattgc acatcgtttt gaaatgacag aagcagaagt gtataagtta cgtcaacagc
     8521 acaacatttg ccctgtgtat aaaatggtcg atacgtgtgc agcagagttt gaatccacaa
     8581 caccttactt ttatggtacc tatgaagaag aaaatgaatc gctcgtcact gaaaaagaga
     8641 aaatcatcgt actcggctca gggcctattc gtatcggtca aggggtagaa ttcgactatg
     8701 caacagtaca cgctgtatgg gcaattcaaa atgctggtta tgaagcgatt attattaaca
     8761 ataacccgga aacggtatcg acagacttct caatttcaga caagttgtat ttcgagccac
     8821 tcacagaaga agatgtgatg aacatcatta atctagaaca acctaaaggc gtcgtcgtgc
     8881 aattcggtgg tcaaacagcg atcaacttag cggacaaatt agcgaaatac ggcgtaaaaa
     8941 ttttaggtac atcacttgaa gatttaaacc gtgctgaaga ccgtaaagaa tttgaagcgt
     9001 tactgaacaa aatcgacgtg cctcagccga aagggaaaac agcgacatcg gctcaagaag
     9061 cactcgataa tgcacgcgat atcggttatc ctgttgtggt ccgtccatca tacgtgctcg
     9121 gtggtcgtgc gatggaaatt gtgtacaatg atgcagaact tgaaaactat atgaatgaag
     9181 cggtgaaagc cagtccagaa catcccgtac tcgtggaccg ttatttaaca ggtaaagaaa
     9241 ttgaagtgga tgccatttct gacggagaaa cagttatgat tccagggata atggaacata
     9301 tcgagcgtgc aggtgttcac tcaggtgact ctatcgcagt atatccgcca caaacgttaa
     9361 gtcaagacgt cattgatacg ttggaagctt atacaatcaa attggcgaaa gggctcaacg
     9421 ttatcggttt aatcaatatc caattcgtcc tcgcacatga tggggtttat gtgctagaag
     9481 tgaatccgcg agcgagccgt actgtgccgt tcttaagtaa aattacagaa attcaaatgg
     9541 cacaactcgc aatgcaagcg attataggtc aaaaactaac agcgctcggt tatcaaccag
     9601 gcattcaacc gtataaagaa ggggtatttg ttaaagcacc ggtattcagc tttaataaat
     9661 tgaaaaatgt cgacatcaca cttggacctg aaatgaaatc aacaggagaa gtgatgggtc
     9721 gcgacattac gttagaaaag gcgctatata aaggattaac agcagcaggg atggaagtca
     9781 aagattacgg tacagcattg attaccgtca gcgataaaga taaagaagaa atggttaaaa
     9841 ttgcgaagcg tttaagtgaa gtaggctaca aaatcttggc aacagcaggc acagcggcta
     9901 cgttgaaaga tcatggcatc aacgttgaaa cggtaggaaa aattggaggc cacgacgatt
     9961 tgattacaaa aattcaagac ggttcagtcc aacttgtcat taacacgatg acaaaaggta
    10021 aaacaattga acgtgacgga ttccaaatcc gccgtacatc agttgaaaat ggggtgcctt
    10081 gtctcacgtc actcgataca gcgaacgcat taacaaatgt tattgaaagc atgacatttt
    10141 caatgagaaa tatgtaggag gtcaaaagcg gtggaaaaat taacagtggt ttcaaatgca
    10201 cctattgcag aacgcattta tgaattaaca gtcaaagggc cggttgttga aaaacttcag
    10261 caacctggtc agttcgtgca tattaaagct ggagaaggct cattacacat gctgcgtcga
    10321 ccgatttcga tttgtcatat cgatcaagcg caacaacaat ttacaatgct atttcgtgct
    10381 gaaggggaag gcacaaagcg tattgctgcc ttaaatgaag gcgacgaaat tgatatttta
    10441 gcaccactag gtaatggttt tccagtagac aaagcgaaga aaaaagcttt actcgtcgga
    10501 gggggcatcg gtgttccgcc gctttatgaa ctttcgaaac aactcaatga acgaggcatc
    10561 gaaacagtac atgttttagg tttccgttct gctaaagatg tgttttatca acaacaattt
    10621 gaggcattag gagaaacgca cattgtgaca gaagatggct cattaggtac aacaggtttt
    10681 gtcacaacgg tcattgatgc acttccagtc gattatgaca ttttttacac gtgtgggccg
    10741 ttacccatgt taaaggcgtt aacacagtta gaaacgttga aagatgtgcc gggttacatt
    10801 tcattagagg agcgtatggg ctgcggtgtc ggtgcatgct ttgcgtgtgt ttgtcacgta
    10861 ccagaaagtc caacagatta tgtgaaagtg tgtacagatg gaccagtatt tgaaagaggg
    10921 gcggttgtac tatgagtcga ttagcagtaa aaattccagg attatcgtta aaaaatccga
    10981 ttatgccggc aagtgggtgt ttcgcattcg gtgcggaata cggtcagttt tacgatttgt
    11041 ctgagttagg ggccatcatg attaaagctg caacgaaaga agcacgtttt ggcaatgaaa
    11101 cgccacgtgt cgcggaaaca gatagtggga tgttgaatgc gattggactg caaaatccag
    11161 gcgtccatca tattattgat catgaactta aagcattagc acaacacgac gttccaatta
    11221 ttgcgaatgt agccggctcg atggaagaag actatgtata cgtagctgaa cacatttcca
    11281 aagcaccaaa tgtgaaagcg ttagaactga atatctcctg tccaaacgta aaagaaggtg
    11341 gcatgcagtt cggtgtagac ccgaccatcg cctctgaatt aacacgtaaa gtaaaagcag
    11401 tgtctgaagt acctgtttat gtgaaactgt cgcctaatgt aacaaacatt gttgaaatgg
    11461 cggaagcgat cgcacagtat gcagatggat taacgatgat taatacactt gtcggtatga
    11521 gaattgacgc acgcacaggc aaaccaatta tttataacgt tacgggtggt ttaagtgggc
    11581 cagcgattaa gccagtcgca ttaagaatgg tgcatgacgt tcgtaaagct ttacctgata
    11641 ttccaattat cgcaatgggt ggcgtccaaa atgcgcaaga cgtcattgat tacgtgtcag
    11701 tcggtgcaga tgcagtggca gtcggaacag caaacttcca aaatccaatg gtctgcaaag
    11761 aaattatcga tactttacct gaatatttag atgccttaaa tgtgcatcgt atttcagaac
    11821 ttaaaggtcg tacattgaaa ggattgcagt aacatgagac aagatccgat tatcgcctta
    11881 gattttgcaa ccgaagcaga agtgatgtca tttttagcgc aatttgatga accattattc
    11941 gtcaaaattg gtatggaatt attttatcag acgggaccag cactcattga tcaaattaaa
    12001 gcacttggcc atgacatctt tttagactta aaattgcacg acattccgaa tacggtcggt
    12061 aaagcgatgg aaggtcttgc aaagttgaat gtggatctcg tcaatgtcca tgcagctggt
    12121 ggtacagtca tgatgcaacg tgcagtggaa gggttacgtc gacacaacaa agctattaaa
    12181 atcatcgccg tcacacaatt aacatctaca tctgaacaac agttgcatga agaacaaaat
    12241 atccaaacgt cgatggaaac agccgtctta aactatgcta gccttgcgca acaagcaggc
    12301 ttagatggtg tcgtatgttc accgttagaa acgacaatga ttcgcgaaca ttgcggcgac
    12361 gacttcttaa aagtgacacc aggtattcgt ctagctaata gtgcaaaaga cgatcagcaa
    12421 cgcatcacaa cacctgaaaa agcacgtcag ctcggttcga cacatattgt tgtcggtcgc
    12481 ccgattacac aaagcgacaa tccagtacaa agttatcatc aaattaaaga aagttggtta
    12541 aatgcatgtc aaaattaatc gcaaaagcat tattagatat cgaagccgta tcattatcac
    12601 cgaatgaaat gtatacatgg agttccggta ttcaatcacc tatttattgt gataaccgtg
    12661 tcacactcgg atatccagaa gtacgtaccg caatccgtga cggcttaatt gaactgattg
    12721 aacaacattt tgctgatgtc gaaatcgttt caggaacagc aacagccggt attccacatg
    12781 cggcatatat ttcagataaa atgaacttgc caatgaatta tgtgcgttca aaaagtaaaa
    12841 gtcatggcaa gcaaaatcaa attgaaggcg cgcgcagtga aggtaaaaaa gtagtggtca
    12901 ttgaagattt aatttcaact ggtggctctt ccatcacagc tgttgaagca ttacaagaag
    12961 cgggtgctga agtgttaggt gtcgttgcaa ttttcacata cggtttaaat aaagctggcg
    13021 aaacgtttaa agcagccggt gtccctttct atacgttaag caactatgac gagctaattg
    13081 aagtcgcacg tgaagaagac caaatttcag aagatgacat tcagacatta gtcgaatggc
    13141 gtaatcaatt ataagcagaa aaagaagctg gttcatatcc ccagcttctt tttgtatttg
    13201 ttaatataac gaattagttg tgaactgcac aataaaacat tactgaaaac ctattgggat
    13261 gagaagaaaa tcctcctata caccatcgtt taggttaagc gttagatgac ttcttttaaa
    13321 cgtgtaaact gttatcttaa gtaccaacgt aaaaagagcc aaccgccaat taagatcaat
    13381 aaaaatacta aaagagggat taataaatgc atactaatca taaaataacc tccaaaaatg
    13441 atttaacact attgtaaccg gttataatat agagtgaaag caaaaacaac agaaatagaa
    13501 ataaacactc cacagtatga cgcagttgta actgatgatt gtgaatttca aaatgaaagt
    13561 atcgcttgac atttgaggag gaccggttat gaaaatacct aaaattacga cgtttttaat
    13621 gtttaatggt gacgctgaag aagcaattca acgttataca tcattatttg aagatagcga
    13681 gattattaca atggtgaaat acgatgacac gattccagaa caagcaggaa aagtacaaca
    13741 ttctattttt acattaaatg gtcaagtctt tatggcgatt gataatatga atggcacaga
    13801 tattgaaatg aacccagcga tgtcattgta tgtgacagtg aaagatcaat ttgaaatgga
    13861 tacattatat catggtttaa aagatggtgg cgcgatatta atgccgaaaa cagcaatgcc
    13921 accacaattt cgtgaattcg cctgggttca agataaattc ggcgtgaact tccaactcgc
    13981 cttaccagaa tcaaagaaat aacaatagaa taagataagc aaaaatccga gtctttcgtt
    14041 acgtgtgacg aaaaggctcg gatttttatg ttgatattta atcttttacg cttcttcagc
    14101 tttcaatcga cgaatcatgt cataatccgg cgttgcgtaa agcgtcttct ggttatcgta
    14161 cgttacaaat ccaggtttac tgccactcgg cttatgcaca ttgcgaattg ttgtataatc
    14221 cactggaatt tgtcctgatt gccccgcctt tgaaaagtac gctgcaatca tcgccgcttc
    14281 ttcaatcgtt ttgtcacttg gcacatcatt taaaatcacg acatggcttc ctggaatatc
    14341 ttttgtatgg aaccataaat gcgatttttg cgcacgttta ttcgttaaat aatcattttg
    14401 cttattattt ttaccgacta aaatcgtatc gccatcagtc gaaacgtagg attgtaactg
    14461 gattttttgt tgctttttct ttttttgctt tttcttttgt ttgataaagc cttgttctgc
    14521 tagttcttca cgaatatcgt caatttcatg aacttgaatg tgtgacaact gttgctcgat
    14581 attttcaaaa taagcgatat tttcttccgt taaagtaatt tgatgggtca attcgcgctc
    14641 acgtgttttc attcggttgt attgcttgta atagtattgc gcattttcag caggtgactt
    14701 ttgtggattt aacggaatag tcacgttttc tcctgtataa taatttactg tttctaactg
    14761 gcgatctcca ggtttgagtt gataaatatt cgctgtgatt aactcgccgt acaattgttg
    14821 attttctttt tcttcagtcc ccgcttgttc atcgacgagc ttacttaatt tattttgata
    14881 tttttgaagt aattgttgga cgagtttgac taaatcgttt gcacgttgtt tgacgcgttc
    14941 acgttcaccg cgtgcatcat aaaaacggtc gagcagttca tggagtgaat catatgtgac
    15001 gcaatcatcg taaaactgat gtaacttcat aaaataaaag tcttctttac ctgtttcgtt
    15061 atttttatga aataccggtt ggggtgtcgc tttcgtttcg gccatcactt cgtcaaaagc
    15121 ttcaggtaaa gtttgtgtgg tcataaaatg gcgccttgat gtgatttctt ttgtgattaa
    15181 cggtgaaaaa ccttcaaacg tttgaagcag ttggcgatca attttgcccg cattgaaatc
    15241 aatatgttgg agcacttgcg caccagtata cgcataaggg ttctgtttat gttgtgttgg
    15301 cggcacttca tattgaaaac ctggcatcac ggttctaaat tgattcgtat ttggtgtaag
    15361 gtgtttaaaa ccttctaaaa ttttacgttc ttcattaacg agaatgagat tactatgttt
    15421 tcccataatt tctaaaatca ctgtacgatg aatcgtgtca ccaatttcat ctttactttc
    15481 cacgtccatt tcgatgcgac ggtcatttcc gatttggcga atggcaagga tacgtccacc
    15541 ttctaaatgt ttacgaaaga cgcgcgcaaa catcggcggt tcaaatggat tatcatattt
    15601 ttttgtagtg aggtgaatcc gtgcaaaatt cgggtgaatc gacaacaaca agtgatgatt
    15661 ttggcgttgc tgtcttataa ccatgatgat tgtatcgttt tccggttgat tgattttatg
    15721 aatacgccca gaaacgagaa attgtaaatc ttctaccatt tttcttgtaa acataccatc
    15781 aaatgccata attatctgcc acctttaaaa attttcatta cattattata acatgcctat
    15841 ccatgcacgt cagaactaaa gttttcgctt ggccctctat gcaattcaat aaaaattgtg
    15901 gtaagatatg ttaataaata gaagaatagc gaagaaaggt cgtaaggcat ggatactgaa
    15961 aaaggcttac taatagtact ctcaggccct tctggtgttg gcaagggcac agttagaaaa
    16021 cgtatttttg atgatccaca cacatcttat aaatattcta tctcgatgac aacgcgtcaa
    16081 atgcgagaag gtgaacaaga tggcgttgat tattttttca aaacgagaga agaatttgaa
    16141 aaactcattg aagcagatga gtttattgaa tacgcagagt atgtaggaaa ttattacggc
    16201 acacccgtgc aatatgttaa agatacgatg aatgcaggtc atgatgtatt tttagagatt
    16261 gaagttgaag gggccaagca agtgcgcaag aaatttccag atgcgctatt tatcttttta
    16321 gcaccaccaa gtctagacca tttaacagag cgtttaatcg gtcgtggaac agaatcaaaa
    16381 gaaaaaattg aaagtcgcgt aaaagaagcg aaaaaagaag ttgagatgat gaatctttac
    16441 gattatgttg tcgtaaacga tgaagtggat ctagcgaaag accgcattca gtccattgtt
    16501 gaagctgaac atttaaagcg agaacgcatt gaagcgaaat acagaaaaat gttattggag
    16561 gccaaaaaat aatgttatac ccaccgttac accacttaca agataaaatt aactcaaaat
    16621 atttaattgc gacaacagcc gctaaacgtg cacgtgagtt acaagctgac cctgatcatt
    16681 tattattaga tcgttatgaa agcaaaaaaa cagtaggccg tgcgttagaa gaaatcgccg
    16741 caagcaaaat tcatccacac gttgatgaat cacactttta attcaataca atcgataaat
    16801 gcatatgaca tttaaaatac gcttttcaaa gttgtctcta tccgttgaga tgaatttgaa
    16861 aggcgttttt tacattgatt gtatattttg gttctttatc aaacgtcggt gaatgagacg
    16921 ataaaatgac atagtctata tctattatta gtagtttcta acgca
//
LOCUS       DANHOL010000045        16525 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.045, whole genome shotgun sequence.
ACCESSION   DANHOL010000045 DANHOL010000000
VERSION     DANHOL010000045.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 16525)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16525)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16525
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.045"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            19..726
                     /locus_tag="PTC08_001061"
     CDS             19..726
                     /locus_tag="PTC08_001061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HDK5682575.1"
                     /translation="MKRLQLLLLFSLACFLLIPINVAHAKGTQVLVPDTVKDTHSKYT
                     AKYKSGSGHTCTAILISSTAAITAKHCGGTQHQSPAGTIYPGASGVSTPFGYMNIRYY
                     IPHPKYDVAVIKGIKRDQDKFYQYYIKPFTTTVRGYSDEELSKFVDQEVYSYGYPYRN
                     GVFKQYRSDGKVNNYSKYLPLLSTDIPAFEGQSGSGVFKKDGPFVGIIVSRARGNEAE
                     VLPFSKEIATWINNNAK"
     gene            1084..1839
                     /locus_tag="PTC08_001062"
     CDS             1084..1839
                     /locus_tag="PTC08_001062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like serine protease"
                     /protein_id="HDK5682576.1"
                     /translation="MKNSPLLYLSTLIYFLLYPVDVTYANGNELTPNAVANPHQDIVP
                     DTVADSHSKYSAYYQVTSTRFCSAILISSTAALTAKHCVGAKPAKRSGRIYPGLNGNK
                     RPFGYMNISTYTPHPNPKYDIAIIKGTERDQDRFYKYYIKKFTTTVRGYTDDELSSFV
                     GDEVYSYGYPNKKPAPIKVQYRSDGNIYKHLKSPKPYLLTDMPAYDGQSGSGVFKKDG
                     SFIGIIITRTKDNKANTLPFTEDIANWINKNAK"
     gene            2203..2958
                     /locus_tag="PTC08_001063"
     CDS             2203..2958
                     /locus_tag="PTC08_001063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HDK5682577.1"
                     /translation="MKKLQLLLSLPLAYLITPVDAVYGKETGMNSDAVSKPHQDMVPD
                     TVKDSHSKYTAKFKMKDGHVCTAILISSTAALTARHCAGTERQKYVGTIYPGASGTKT
                     PFGYMNISEYIPHPNQDLFKKYDIALLKGTERDQDKFYKYYIRKFKTSVTGYTDDQFQ
                     KFSGKEIYSYGYPYKGSDFYQYRSDGSITRYVERFKSIQTDLPTVVGQSGSGVFTKNG
                     EFIGIVIESTTDRKGIVLPFTQEIADWINANAN"
     gene            3166..3876
                     /locus_tag="PTC08_001064"
     CDS             3166..3876
                     /locus_tag="PTC08_001064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like serine protease"
                     /protein_id="HDK5682578.1"
                     /translation="MKKLRLITLLSLVCFIFLPVNTAFAQKGTQVVVPDTVKDPHSRY
                     TAKYESGTHQHCTAILISSTVALTAKHCGGNNRKSFNGTIYPGESGLSTPFGYMNIST
                     YIPNPDYDIAILKGTKQDQSRAYQYYIKNFSTKVSGFTDAEFDGFVNREAYSYGYPYK
                     FSGYKQYRSDGQVTFHQKNPALLRTTLPTHEGQSGSGVFLKNGELTGILITRTQNYEG
                     NILPFTKEIAEWVNKNAN"
     gene            4096..4803
                     /locus_tag="PTC08_001065"
     CDS             4096..4803
                     /locus_tag="PTC08_001065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HDK5682579.1"
                     /translation="MKKLQLILLLSLACFVLLPVDTAFAKKGTQEVVSDTVADPHSKY
                     TAKYESGTRRVCTAILISSTAAVTAKHCGGTQRLSPAGTIYPGASGPLMPFGYMNIRN
                     YIPHPTQDIAVIKGISRDQSKAYQYYIRPFTTQVTGYSDDALRGFVGQEVYSYGYPYR
                     DGVFKQYRSDGIIKFYVKPPLLVTDMPALGGQSGSGVFKKDGQFVGIIIGRRSDGEAN
                     VLPFTQEIAEWVNKNAN"
     gene            5026..5745
                     /locus_tag="PTC08_001066"
     CDS             5026..5745
                     /locus_tag="PTC08_001066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HDK5682580.1"
                     /translation="MKKSCSILLMSLVCFFFFPIDATYAKGTQVLVPDTVADPHSKYT
                     ARYESGTHKQCTAILISSSVALTAKHCGGDHPTTYNGTIYPGESGLSTPFGYMNISTY
                     IPNPDYDIAILKGTEQDKTNAYKYYIKPFKTPVTAFSDETLSSFIGQDVYSYGYPSKY
                     GGYKQYRSDGKMNFYEKNNKLFLTSLPTFEGQSGSGVFKKDGQFVGLLITRTQDYEGN
                     FLPFTQEVADWVNTNSNGPVS"
     gene            5951..6661
                     /locus_tag="PTC08_001067"
     CDS             5951..6661
                     /locus_tag="PTC08_001067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HDK5682581.1"
                     /translation="MKKLQLLLLLSLACFILSPVDAAFAKKGTQVIVPDTVADPHSKY
                     TAKYESADHSHCTAILISSTVALTAKHCGGDYHTTYNGTIYPGGSGLKTPFGYMNIST
                     YIPNSKYDIAILKGTEKDQSKDYHYYIKPFKTTVAAFSDQELYGIMGLDLYSYGYPYK
                     FSGYKQYRSDGSIYYYYKNAAFVHTSLPTYEGQSGSGAFLKDGRFVGIIITRTEKFEG
                     NFLPFTQEIADWVNKNAN"
     gene            6874..7584
                     /locus_tag="PTC08_001068"
     CDS             6874..7584
                     /locus_tag="PTC08_001068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HDK5682582.1"
                     /translation="MKKLQLLLLLSLACFVLLPVDTAFAKKGTQVIVPDTVADPHSKY
                     TAKYESADHSHCTAILISSTVALTAKHCGGNHPTTYNGTIYPGESGLKTPFGYMNIST
                     YIPNSKYDIAILKGTEKDQSKDYHYYIKPFKTAVTGFTDDTLDSFVGLETYSYGYPYK
                     FSGYKQYRSDGEISFYQKNEPILRTTLPTHEGQSGSGAFLKDGRFVGIIITRTQDYEG
                     NVLPFNQEIADWVNKNAN"
     gene            complement(7728..8333)
                     /locus_tag="PTC08_001069"
     CDS             complement(7728..8333)
                     /locus_tag="PTC08_001069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2812 domain-containing protein"
                     /protein_id="HDK5682583.1"
                     /translation="MKVRYKKWKCFFDPLKEERWLNDQLQQGYRLTRVSFFGNYYFEK
                     TNESHIVRLDYQEIYSRQKMNDYLALYESFGWEHVHGYRGGCTKQYWMKAGDETEVLF
                     SDRESLSNYYKRWLKFLDALLLVYFALFVANLTQNHYSRDIFLTPGLWDMEGAQFWRA
                     YLFEFPFAVMRFLGYYLYFILLIPLFVVYHQFKKKLKELIV"
     gene            complement(8317..8649)
                     /locus_tag="PTC08_001070"
     CDS             complement(8317..8649)
                     /locus_tag="PTC08_001070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDK5682584.1"
                     /translation="MKKRPQLVPLSETMHYILLALRQPLHGYSVMTYVQELSLGQVQI
                     AAGTLYGALENLSKHGYIQMISDPKERRKVYQITARGEEILKLETERLQHLVSLYQQG
                     GSSDESTL"
     gene            complement(8802..10343)
                     /locus_tag="PTC08_001071"
     CDS             complement(8802..10343)
                     /locus_tag="PTC08_001071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SLC13 family permease"
                     /protein_id="HDK5682585.1"
                     /translation="MNNPNESRLLTFFTDKKKDPSYTLAQSIGLVLGPLLFALILLFV
                     RPDDLAFKGVYVLAITAWIAIWWITEAIPIPATSLLPLVLLPLGHVMNSATVSAQYGN
                     DIIYLFLGGFILAIAMERWDLHTRIALTIISSIGTSTGRILLGFMVATGGLSMFVSNT
                     AAVMIMIPIGLAIIKEANALKTEADSDESIQKFERSLVLGIGYAGTIGGLGTLIGTPP
                     LIILKGQYATNFGGELSFAKWMIVGVPTVILLLFLAWLYFKFIAFRHDMKTLPGGQKV
                     IKDKLDALGKIKYEEKVVFLVFLLASFLWISREFLLSKWAFTELVADGTIAMFVSILL
                     FLIPAKHQHQRILDWSVAKELPWGVLILFGGGLALAKGIQQSGLAAWLGEQLTLLKGV
                     SPLIIVVVITVFILFLTEITSNTATATMILPILATLSVAIDVHPLLLMAPAAMAANCA
                     YMLPVGTPPNAIVFGTGKIQIKEMAVKGFIMNLISIVVIIVVVYFIMPLVLGIDITHS
                     IPVKK"
     gene            complement(10923..11384)
                     /locus_tag="PTC08_001072"
     CDS             complement(10923..11384)
                     /locus_tag="PTC08_001072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter family protein"
                     /protein_id="HDK5682586.1"
                     /translation="MTIVFIFICSFLTSFCFAFVYDAPKRLFLPAGLCGGFGYLTFHI
                     VFEIFSIDSIYASLYGSFVLGIISHVMARQYKSPVILFMVPGIIPLVPGSIFFKATQQ
                     LLTLNFNEASDIFVRATLIAGAIAVGLLISDQVAKSFIRKPIAILKLPAKK"
     gene            complement(11397..12152)
                     /locus_tag="PTC08_001073"
     CDS             complement(11397..12152)
                     /locus_tag="PTC08_001073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016424348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter family protein"
                     /protein_id="HDK5682587.1"
                     /translation="MTRYIPTDREVTNLVTLAGRILLECGAEATRVEDTMTRIAQSYG
                     YEETQGYALNIFINFSLSPDHETRMVRIKKNDTNLRNIYLVNHVSRQIARQAIDFKEA
                     YAMLKQLEHKQQRYALGHKMLFAGLISMGFLYLQGATWVDLLPAVLAGAMGYFVTEWM
                     KSKELTLFIPDFLGAIVIGLIAIPLNHWLGSPNIGATITAAVMPIVPGVLITTAIQDL
                     FGRHMLMFTAKFLEAIVTSFAIGAGVTTAFLIL"
     gene            12653..12991
                     /locus_tag="PTC08_001074"
     CDS             12653..12991
                     /locus_tag="PTC08_001074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system PemK/MazF family
                     toxin"
                     /protein_id="HDK5682588.1"
                     /translation="MSIKQFDIIYIDLNPTRGREKQNIRPCLVINNQMMIDGTEFVWV
                     VPIINRELRYPTDIELKTKKGLVSGVIDTIQIRALDLNARQHHYKDALQDNLKSKVLK
                     AIQTYLNPNY"
     gene            complement(13199..13954)
                     /locus_tag="PTC08_001075"
     CDS             complement(13199..13954)
                     /locus_tag="PTC08_001075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme-dependent peroxidase"
                     /protein_id="HDK5682589.1"
                     /translation="MSHAAETLDGWYSLHLFYAIDWASWRLVPQEDRADMIAEFHRLM
                     DRLKQAQSEGQGDQVLYNVTGQKADLLLWVLRPEMKDLTEIENEMNKLAISDHFIPTY
                     SYVSVVELSNYLAGDSNEDPYENPHVKARLYPELPEKEYICFYPMNKRRNETYNWYML
                     SMEERKKLMYDHGMIGRKYAGKIKQFITGSVGFDDFEWGVTLFADDVLQFKKIVYEMR
                     FDETTARYGEFGSFFVGHRLDTARFDALMTIEH"
     gene            14122..15111
                     /gene="pta"
                     /locus_tag="PTC08_001076"
     CDS             14122..15111
                     /gene="pta"
                     /locus_tag="PTC08_001076"
                     /EC_number="2.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acetyltransferase"
                     /protein_id="HDK5682590.1"
                     /translation="MSSLLDVLKDKLSGKNVRIVLPEGEDERVLTAAVDLQASDYVAP
                     IVLGNVDKIKALAAEKSLNIEGLNIIQPDTSDLKATLVEQFVERRKGKATEEQAQSLL
                     NDVNYFGTMLVYAGHADGLVSGAAHSTADTVRPALQIIKTKPGVSKTSGIFFMIKEDQ
                     QFIFGDCAINPELAASDLAEIAVESAKTAQSFGMDPRVAMLSFSTKGSAKSDDTEKVA
                     EAVKLAQEKIDAENLSDVIIDGEFQFDAAIVPEVAKKKAPDAKIQGDANVFIFPSLEA
                     GNIGYKIAQRLGGYDAIGPVLQGLNSPVNDLSRGSSTEDVYNLSIITAAQSLQ"
     gene            15111..15947
                     /locus_tag="PTC08_001077"
     CDS             15111..15947
                     /locus_tag="PTC08_001077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019834666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoate--protein ligase family protein"
                     /protein_id="HDK5682591.1"
                     /translation="MDLAHKYFNGHTWRYVDHSSGLEPMQSFAFDDTFSESVGADLSP
                     SVVRTWVHQHTIILGIHDSRLPYLKDGIQYLTDERGYNAIVRNSGGLGVVLDQGILNI
                     SLMFKGKTEVTIDEAFTVMYLLMGQMFEDDFTEIATHEITHSYCPGKFDLSINNQKFA
                     GISQRRVRGGIAVQIYLCVEGSGSERAELMRAFYERALKGEKTKFTYPDIHPSSMASL
                     EELLGRPITVQDVMFKLLYAIKDLGGSLNMDPMTPHEWERYEHYYERMLDRNAKMNAK
                     LD"
BASE COUNT         5374 a         3322 c         2869 g         4960 t
ORIGIN      
        1 tattaaaggt gtgatgacat gaaaagatta caattgttgc tcttattttc tttagcatgc
       61 tttcttctaa tacctattaa tgttgctcat gccaaaggaa cacaagtact cgttccagat
      121 acagtcaaag acacgcacag taaatatact gcaaaataca aatctggaag cgggcacact
      181 tgcacagcga tacttatctc atcaactgct gcaattaccg ctaagcattg cggagggact
      241 caacatcaat cccctgctgg cacgatatac cccggcgcgt caggagtaag cacacctttt
      301 ggttatatga atattagata ctatattcca caccctaaat acgacgtagc ggtcattaaa
      361 ggtataaaaa gagaccaaga taaattctat caatattata ttaaaccatt cactacaaca
      421 gttcgaggtt actcagatga ggaactaagt aaattcgttg atcaagaagt atattcatat
      481 ggctaccctt acagaaatgg tgtttttaag caatatcgca gtgatggtaa agtgaataat
      541 tacagtaaat accttcctct tcttagtacg gatatacctg catttgaagg acagtcggga
      601 tctggtgtct ttaaaaaaga tggccccttt gttggaatta ttgtttcaag agcccgaggt
      661 aacgaagcag aagtacttcc cttcagtaaa gaaatcgcga catggattaa caacaacgcc
      721 aaatgatgtc ctgcttcatt atatattttt tctatcttta ttattcatgc caaaattgat
      781 cggcaattga tttccgtctc ttaccgataa gatggttaaa cgcccacata aacttagcag
      841 gattatcttc caacactttg attttacact tatgtatagg cctttttaat tttcaccatg
      901 ccaccacaat ctttcaatgc attaatatca agtgccagca taactcgtag tgagcatctc
      961 cttatcaaag tccactattt ttcgaggcca ttcgttacgc tgttgttcaa tcggtataag
     1021 attttatatg tttctcaata cacaaaaata ttgccatgac aatataacga aaggtgtgat
     1081 aatgtgaaaa attcaccatt actatactta tcaactttaa tatactttct cctttaccct
     1141 gtcgatgtta cttatgccaa tggaaatgaa ttaaccccaa atgcggttgc aaacccacac
     1201 caagacatcg tgccagatac tgtggcagat tctcacagta aatatagtgc atattaccaa
     1261 gtgacttcaa cccgcttttg ttcagccatc ctaatttcat caactgccgc actcaccgcc
     1321 aaacattgtg taggggctaa acctgccaaa agaagcggta gaatatatcc agggcttaat
     1381 ggaaacaaaa ggccatttgg ttatatgaat attagcacct acacgccaca tccaaatcca
     1441 aagtatgata ttgcaataat aaaagggacc gaaagagatc aagatagatt ctacaaatac
     1501 tacattaaaa aattcacaac aacagttcga ggttataccg atgatgagtt gagcagtttc
     1561 gttggtgatg aagtatactc ctatggttac cctaacaaga agcctgctcc tataaaagta
     1621 caataccgta gcgatggtaa tatttataaa catttaaaaa gtccaaaacc ttaccttctt
     1681 acggacatgc ctgcttatga cgggcaatct gggtcaggcg tcttcaaaaa agatggcagt
     1741 tttataggca ttatcatcac aagaacaaag gataacaaag ccaatacact cccttttact
     1801 gaagatattg caaattggat taataaaaat gcgaaataac acgctgtttt ttctttaagt
     1861 tgctggaact ctcagcacga agaggttgga actcgatgtc cagcctctta attatgtagt
     1921 ggataagttt aatgtgcatt tggtgatatc ccgtcatcat tttatgaata ctttttattc
     1981 agtcgtctcc ccgctcaatt tttccggaaa acaattattc aaatgcctaa acttatcttt
     2041 cagactattt ttgaatatca cgctcagcat tacgtacatt atcatccacc tgtgattttg
     2101 tgtttttaaa ttaagtcttg aggaaaaatg atataacata aaataaacat aatattttat
     2161 tcgtgttaat atctttaata taatataaaa taggtgtata aaatgaaaaa gttacagtta
     2221 cttctctcat tgcctttagc ctaccttatt acgcctgtag atgctgttta tggcaaagaa
     2281 actggaatga actcagatgc agtttctaag ccccaccaag acatggttcc agatacggtt
     2341 aaagactctc atagtaaata tactgcaaaa ttcaaaatga aggatggaca cgtttgtaca
     2401 gcgattttaa tttcatccac agcggcatta accgcgagac attgcgcagg gactgaacga
     2461 caaaaatatg tcggtacaat atatcctggc gcttcgggaa caaaaacgcc ttttggctat
     2521 atgaatatta gtgaatacat tccacatccg aatcaagatc tatttaaaaa gtatgatata
     2581 gcactactaa aaggaaccga aagagatcag gataagttct acaaatatta cattagaaaa
     2641 ttcaaaacgt cagtgacagg ttatacagat gatcaatttc agaaattcag cggtaaagaa
     2701 atatactctt atggctatcc ttacaaagga agcgattttt atcaataccg gagtgacggt
     2761 tcaattacga gatatgttga gcgctttaaa tctattcaaa cagatttacc aactgttgta
     2821 ggtcaatctg ggtctggggt tttcacaaaa aatggtgaat ttattggaat agttattgaa
     2881 agtactactg accgcaaagg gattgtactc ccttttactc aagaaattgc agattggatt
     2941 aacgcaaacg cgaattaaga acttgcttct tcatcaattt ctctatctct ttgattacgc
     3001 atactaaaaa ataaaagctc gtgcatgatt tccaacctct tatttttgtt atgacttaac
     3061 tacaataaaa agttcgggtt attcatccta acaccactct ttttatttca taacttcata
     3121 agattattta tatattcaag catatctaat taaaggagtg ataatatgaa gaaattacga
     3181 ttaataacat tactgtctct cgtatgcttt atctttttgc ctgtcaatac tgcttttgcc
     3241 cagaaaggaa cacaagtcgt tgtaccagat acagtcaaag acccccacag tagatatact
     3301 gcaaaatatg aatctggtac acaccaacat tgtactgcta tactcatttc gtcaactgtc
     3361 gcattaactg ctaaacattg tggtggaaat aatcgcaaat cttttaatgg gacaatttat
     3421 ccaggagagt ctgggttaag tacgccattc ggctatatga atatcagtac ctatattcct
     3481 aacccagact atgacatcgc aatattgaaa gggactaaac aagaccaaag tcgagcttac
     3541 caatactata ttaaaaattt cagtacaaaa gttagcggtt tcacagatgc cgaattcgat
     3601 ggtttcgtaa accgagaggc atactcttat gggtatcctt acaaattcag cggttataag
     3661 caataccgta gcgacggtca agttactttt catcaaaaaa atcccgctct tcttcgtacg
     3721 actttaccta ctcatgaggg acaatcggga tcaggtgtgt ttttaaaaaa tggtgaatta
     3781 accggaattc ttatcactag aacacaaaac tacgaaggaa atatcctccc ttttacaaaa
     3841 gaaattgcag aatgggttaa caaaaacgca aattaagctt tactgtagac aagttcactg
     3901 cctttatttt cacatcaaag aggctcacac ttaattttca actattgaat gatgtcacga
     3961 ctttaataaa acatttaata cttaccgtac attacgattt aacatatttg cacacagctg
     4021 taactttgtc cttttatttc atcacttcac gagaataaca atttcataaa aagatatcat
     4081 taaaggagtc acaacatgaa aaaattacaa ttgatacttt tattgtcctt agcttgcttt
     4141 gtccttttac ctgtcgatac tgcttttgct aaaaaaggta cacaagaagt cgtctctgat
     4201 acagttgcag atcctcacag taaatatacc gccaaatacg agtctggtac tcgtcgtgtt
     4261 tgtacagcca ttctcatttc ttcaactgcc gcagtgactg ctaaacattg tggaggaact
     4321 caacgcttgt cacccgctgg cacgatatat ccaggcgcat caggaccact tatgcctttt
     4381 ggttatatga atattaggaa ctacattcca catccaacgc aagatattgc agtaatcaaa
     4441 ggaatttcaa gagatcaaag taaagcctat caatactata ttagaccatt cactacacaa
     4501 gttactggtt attctgatga cgcattaaga ggttttgttg gtcaagaagt atattcttat
     4561 ggctaccctt acagagatgg cgtttttaag caatatcgaa gtgatggcat tattaaattt
     4621 tacgttaaac ctcctcttct tgttacggat atgcctgctc ttggaggaca atcggggtcg
     4681 ggcgttttca agaaagatgg acaatttgtc ggcattatca ttggaagaag gagtgatggc
     4741 gaagcaaatg tactcccttt tactcaagaa attgcagaat gggttaacaa aaacgcaaat
     4801 taaggttgct gtaatcgtgt aatcttccta ttctttatca ttcatgccaa agagactggt
     4861 acatcaccct atcctcttac ttttgttata acttaaatgt aaaaaaattg cgtcattcac
     4921 catcgcacgc ttttcatttt atagctccac aggattgtta tttcataaaa ttttaaggtg
     4981 attcttttaa tatattaaat aatcaaatat taaaggagtg ataacatgaa aaaatcatgc
     5041 tcgatactat taatgtcact agtatgcttt ttcttcttcc ctattgatgc tacttatgct
     5101 aaaggaacac aagtccttgt accagataca gttgctgatc ctcacagtaa atatactgca
     5161 agatacgaat ctggcacgca taaacaatgt accgccattc tcatttcttc cagtgtcgca
     5221 ttaactgcta aacattgcgg cggagatcac cccacgacat ataacgggac gatttatcca
     5281 ggtgaatcag ggttgagcac accttttggc tatatgaata ttagtaccta cattccaaac
     5341 ccagactatg acattgcaat attaaaaggg actgaacaag acaaaactaa tgcttataaa
     5401 tactatatta aaccgttcaa aacgccagtg acagcattct cagatgaaac actaagttcc
     5461 ttcattggcc aagatgttta ttcctatggt tatccatcca aatatggcgg atacaaacaa
     5521 taccgtagcg atggcaaaat gaatttttac gaaaaaaata acaaactttt tctgacatca
     5581 ctacctactt ttgaaggaca atctggatcc ggcgttttca aaaaagatgg tcaatttgtt
     5641 ggacttctca ttacaagaac acaagactat gaaggaaact ttcttccttt cactcaagaa
     5701 gttgcagact gggttaacac aaacagtaac gggcctgtat cgtagatgga tgatttctca
     5761 acgttaagct tcaagtctca gcgtctcatc tatgaatagc gcccttggac gggtgtgatg
     5821 acttcaatat cgaaagtggt gagtgctgtg caacacaatt caacttgtta tacttcgtta
     5881 caactttgtc cttataattt catatcttcc tgaataatta ttccataaaa acaattagag
     5941 gagtgacaaa atgaaaaaat tacaattgct acttttattg tccttagctt gctttatcct
     6001 ttcccctgtt gacgctgctt ttgccaaaaa aggtacacaa gtcatcgtcc ctgatacagt
     6061 tgcagatcct cacagtaaat ataccgccaa atacgagtct gcagatcact cgcattgtac
     6121 tgccatactg atttcatcaa ctgttgcatt aaccgctaaa cattgcggtg gagattacca
     6181 cacaacatat aatggaacga tttaccctgg gggatcaggg ttaaaaacac cttttggtta
     6241 tatgaatatt agcacttaca ttccaaactc gaaatatgat atcgccatat tgaaagggac
     6301 tgagaaagac caaagtaaag actatcatta ttatattaaa cctttcaaga ccaccgttgc
     6361 agctttcagt gaccaagaat tatacggtat catggggctt gacttatact cgtatggcta
     6421 cccttataag tttagtggtt ataaacaata tcgcagtgat ggtagcattt attattatta
     6481 taaaaatgct gcttttgtcc atacatcatt acctacttat gaaggacaat caggatctgg
     6541 cgctttctta aaagatggtc gatttgtagg tatcatcatc acaagaacag aaaaatttga
     6601 aggtaatttc ctccctttta ctcaagaaat tgcagattgg gttaacaaaa acgcaaatta
     6661 atctttactg tagacaggtt cactgttttt attttcacgt caaagaggct cacacttaat
     6721 ttccaactat tgaatgatgt cacgacttaa atacaacatg taatacgcac cgtacattgc
     6781 tattgaacat atttacacaa ctgtaacttt gcccttataa tttcatatct tcctgaataa
     6841 ttattccata aaaacaatta gaggagtgct catatgaaaa aattacaatt gctactttta
     6901 ttgtccttag cttgctttgt ccttttacct gtcgatactg cttttgccaa aaaaggaaca
     6961 caagtcatcg tccctgatac agtcgcagat cctcacagta aatataccgc caaatacgag
     7021 tctgcagatc actcgcattg tactgccata ctgatttcat caactgttgc attaaccgct
     7081 aaacattgtg gcgggaatca tcctacaaca tacaatggga cgatttatcc aggcgagtca
     7141 ggattaaaaa caccttttgg ttatatgaat attagcactt acattccaaa ctcgaaatat
     7201 gatatcgcca tattgaaagg gactgagaaa gaccaaagta aagactatca ttactatatt
     7261 aaaccattca agacagctgt tacaggtttc acagatgaca cgcttgacag tttcgtcggc
     7321 cttgaaacat actcttatgg ttacccgtat aaatttagcg gttataagca atatcgcagt
     7381 gatggtgaaa taagttttta tcaaaagaac gagcctatcc ttcgtacaac attacccact
     7441 catgaaggac aatcaggatc gggtgctttc ttaaaagatg gtcgatttgt aggaattatc
     7501 atcacaagaa cacaagacta cgaagggaac gtccttcctt tcaaccaaga aattgcagac
     7561 tgggttaaca aaaacgcaaa ttaggacttc gccgtttcac ttgtccctta atactcatgg
     7621 caaaaaagag gctgatgcat cacaatcagc ctcttcgtta tggggtcaac tgtaaattaa
     7681 aacaatgtgc cctactattt tacacataga aaagatgaat gttttcctta tacaataagc
     7741 tctttcaatt tctttttgaa ttgatgatac acgacaaata gcggtatcaa taaaatgaaa
     7801 taaaggtagt atcctaaaaa gcgcattacc gcaaatggga actcaaacaa gtatgcacgc
     7861 caaaactgtg caccttccat gtcccacaaa cccggcgtta aaaaaatgtc tctactgtaa
     7921 tgattttgcg tcaagttcgc cacgaataat gcgaaatata ctaaaagcaa agcatccaaa
     7981 aatttcagcc agcgtttgta ataattgctt aaagactctc gatcagaaaa caacacttct
     8041 gtctcgtccc ctgccttcat ccaatattgt ttcgtacaac cgccgcggta cccatgtacg
     8101 tgctcccaac caaatgattc gtataaagca agataatcat tcattttttg gcggctataa
     8161 atttcttgat aatctaagcg tacgatatgc gattcattgg tcttttcgaa ataataattg
     8221 ccaaaaaatg acactctggt taaacgatag ccttgttgaa gttgatcatt aagccatcgt
     8281 tcttctttga ggggatcaaa aaaacatttc cactttttat aacgtacttt catctgaaga
     8341 ccctccttgt tgataaagtg acactaaatg ttgcaagcgt tctgtttcaa gtttcaaaat
     8401 ttcttcgcct cgtgctgtga tttggtacac tttgcgtcgt tctttcggat cgctaatcat
     8461 ttgaatatag ccatgtttac ttaaattttc taatgccccg tacaatgtgc ctgcagcgat
     8521 ttgtacttgt cctaaactta actcttggac ataagtcatc acactatagc catgcaaggg
     8581 ttgtcgtaat gctaataaaa tgtaatgcat tgtttcggat aacgggacaa gttgaggtct
     8641 ttttttcatt tatttcacca cacattatat agttcaactg tatagtttga ttgtatagtt
     8701 cgactgtata attgtcaacc agtaaaaaat aggcattgaa cactgtcatc tgtcaatgaa
     8761 ctcagacaat ggttcaacgc ctatggaaat atgcatttgt attatttttt cactggaatg
     8821 ctatgagtaa tatcaatacc taacacgagc ggcatgataa agtacacgac gacgataatc
     8881 acgacaatac taattaagtt catgataaaa cctttgactg ccatttcttt aatttgaatt
     8941 ttacctgtac caaagacaat tgcgttcggt ggtgtcccta cgggcaacat gtatgcacag
     9001 ttagcggcca tcgctgcagg cgccattaac agtaatgggt gcacgtcaat cgctacagaa
     9061 agtgtcgcta atattggtaa aatcatcgta gctgtcgctg tattagatgt gatttccgtt
     9121 aagaacaaga tgaacacggt aatgacaacg acgataataa gcgggctgac cccttttaac
     9181 aatgtcaact gttcaccgag ccaagccgcg agtccacttt gttgaatccc tttagctaag
     9241 gctaaaccgc caccaaatag aatgagtacg ccccacggta attctttagc gacagaccaa
     9301 tctaaaatgc gttgatgttg gtgtttcgct ggaattaaaa atagtaaaat ggacacgaac
     9361 atcgcaatcg taccatctgc cacgagttct gtgaaagccc atttagataa taaaaattca
     9421 cgtgaaatcc ataaaaaact cgctaataaa aagacgagaa atacgacttt ttcttcatat
     9481 ttgattttac ctaacgcgtc caatttgtct ttgatgacct tttgaccgcc tggcaatgtc
     9541 ttcatatcgt gacggaacgc gataaatttg aagtacagcc atgctaaaaa taacagtaaa
     9601 atgactgttg gtacaccgac aatcatccat ttcgcaaagc tcagttcgcc accaaagttt
     9661 gtcgcgtatt gcccttttaa aatgattaaa ggcggtgttc caataagcgt acccaagccc
     9721 ccaatagtgc cggcataacc gataccgagc acaagtgagc gttcaaactt ttgaatactt
     9781 tcatcactat ccgcttctgt tttcaatgca ttggcttctt taataatcgc caaaccaatc
     9841 ggaatcataa tcattaccgc agctgtgttc gatacaaaca tcgataaacc acccgttgcg
     9901 accatgaaac cgagtaaaat gcgccctgta cttgtaccaa tactgctaat aatcgtgagg
     9961 gcaatacgtg tatgtaagtc ccaacgttcc atcgcaatgg ctagtataaa accacctaag
    10021 aagagataaa tgatatcatt cccgtattgc gcggacacgg ttgcactgtt catgacatgt
    10081 cctaacggca atagcacgag tggcaataaa cttgtcgctg gaattggaat ggcttctgta
    10141 atccaccaaa tcgcaatcca agctgtaatc gcaaggacgt aaaccccttt gaaagctaaa
    10201 tcatctggtc gaacaaaaag taaaatcaat gcaaacaata atggtccgag gacgagtccg
    10261 attgattgag ccaatgtgta cgatggatcc ttctttttgt ccgtaaaaaa agttaacaat
    10321 cttgattcgt ttggattgtt catgatgcat ccccctttgt tttcaataga acaccccaaa
    10381 ttgtattaat tttttaaata gtatagcata tttgacgatt gtgtatctag agtaagttaa
    10441 gcgctttctt tgatggcata tttctattga acaccccatt taaatatgat tcaatccaat
    10501 acagaaaata ttcactcaaa aatggaccat catttaaaaa atagggtatt gtgataaaga
    10561 gaacaacgat agcaaagttt gattgaaaaa aacacacaag ttcatgtgta ctcagtgcca
    10621 ctggacagcg tgataaagaa ggtgatggga tggagaaact catttatgca cttaaaatag
    10681 gggtagtcta ttttttagtc tattgcacag cgcgctattt taggcccacg tatgattatt
    10741 ttcttgagac cgtagtgttt tctttggtcg ttgccctttt aactgtattt atttctttat
    10801 ttttaatcga gaagcccaaa agttaacaca ttactaacgc cagcataggt tgaagtttca
    10861 ttccctccat ctatactggc gtttttctag tgatatacag ccactaacct gaaatcttta
    10921 cactattttt tagcaggcaa cttcaatatc gcaatcggtt tacgaataaa cgactttgcc
    10981 acttgatccg aaattaacaa tccgaccgca atcgcgccag caatcaatgt agcacgaacg
    11041 aagatgtcac tcgcttcatt aaagttcaat gtcaataatt gttgggtcgc tttaaaaaat
    11101 atacttcctg gcactagcgg aataataccg ggcaccatga atagaatcac gggcgattta
    11161 tattgacgcg ccatgacatg cgaaatgatg ccgagaacga aactaccata cagactcgcg
    11221 tatatgctat cgatgctgaa tatttcaaaa acgatatgaa atgttaaata gccgaaaccg
    11281 ccgcataaac cagccggtaa aaacaaccgt ttcggcgcat catatacaaa tgcaaaacaa
    11341 aaagaggtta aaaagctaca tatgaaaata aatactatcg tcatggttgc cacctcctac
    11401 aagatgagaa acgctgtcgt tacacctgca ccaatcgcaa atgatgtgac aatcgcttct
    11461 aaaaatttgg cggtaaacat cagcatgtga cgtccgaata aatcttgaat ggctgtcgta
    11521 attaagacgc ccggcacaat cggcatcacc gctgcagtaa tggtggcacc gatattagga
    11581 ctacccaacc aatgatttaa cggtatcgca attaacccaa tcacaatggc gcctaaaaag
    11641 tcgggaataa ataatgtgag ttctttactt ttcatccatt ctgtcacgaa atagcccatt
    11701 gcgccggcaa gcactgcagg aagtaggtca acccatgtgg caccttgtaa atataaaaag
    11761 cccatcgaga tcagtcccgc aaacaacatt ttgtgcccca atgcataccg ttgctgctta
    11821 tgttctaatt gtttcaacat tgcataagct tctttaaaat caatcgcctg ccgtgcaatt
    11881 tgacgcgaaa cgtgattcac taaataaata ttccttaaat tcgtgtcgtt ctttttaatc
    11941 cttaccatac gtgtttcgtg gtccggggat aatgaaaaat taataaaaat attgagcgca
    12001 taaccttgtg tctcttcata tccgtaactt tgtgcaattc gcgtcatcgt atcttccaca
    12061 cgcgtcgcct cagcaccaca ttctaataaa atacgccctg ccaatgtcac cagattcgta
    12121 acctctcgat ctgtgggtat gtatcgcgtc atctccgtca cctactttta tgtatttcta
    12181 tctgcatcca aattggaaag gcccatactc tgccacttag tttaaaaatt ataaccgatt
    12241 tgcgttgaga ttgctatgat agatgataac gccactcacc cctatcaaaa tagatgtatc
    12301 gcttatagca taatcatttc ctcaaacctt tcactttttg tatttacata agtaagtact
    12361 tttattgtaa tatgtttatg gagatgataa aaatgactca aacatttaac gatgtaagta
    12421 aatcgaccga acgcattctt aaaaacggaa atagtcaagc tatgagttaa agtaaaaaaa
    12481 cgattcaatc cgttgatttt gagattggcg atacagttga agtacaaaaa taaatggcgg
    12541 gctgttcatt actaaaaaag aagtatctat atagtatcaa aaacttcttc caaaatggtg
    12601 gtaagtatca agaatcagaa gtagagttcg gcgaaagtgt gggtcgtgaa atatgagtat
    12661 taaacaattt gacatcattt acattgattt aaatccaact cgcggtcgtg aaaaacaaaa
    12721 cataagacct tgtttagtga tcaataacca aatgatgatt gacggcactg aatttgtatg
    12781 ggttgtacct atcataaatc gtgagttgcg ttatccaacc gatatagaac ttaaaaccaa
    12841 aaaaggactg gtatctggcg tgatagatac gattcaaata cgtgctttag acttaaacgc
    12901 tcgccaacat cactataaag atgcattaca agacaatcta aaaagtaaag ttttaaaagc
    12961 aatacaaaca tatttaaatc caaactacta aaatgtgata gaaattttta aaaaatatag
    13021 taatagaaag gattaaacaa tcaaacgtca tgattgcttt gataatactt aagtctaatg
    13081 gaaattccag gcaacgatta attcacaaga ccatttaatc cagcgaaaat gatcgatttt
    13141 tcttccatat caaaaaagac agtgtcgccc ttatatcgac ttacactgcc tcccttcatt
    13201 aatgttcaat tgtcattaac gcatcaaaac gtgctgtatc taaacggtga ccaacgaaga
    13261 agctgccaaa ttcaccgtaa cgtgcagtcg tttcatcaaa gcgcatttca taaacgattt
    13321 ttttgaattg gagcacgtca tctgcaaata gcgtcacgcc ccattcaaaa tcatcgaaac
    13381 ctactgaacc agtaatgaac tgcttaattt tacctgcata tttacgacca atcatcccgt
    13441 gatcgtacat taatttttta cgttcttcca tagataacat gtaccagtta tatgtctcat
    13501 tacgacgttt attcatcgga tagaaacaga tgtattcttt ttctggtagt tctgggtaca
    13561 atcttgcttt cacatgtggg ttttcgtatg gatcttcatt ggaatcccct gcaagatagt
    13621 tacttaattc tacaacagat acgtatgaat acgtcggaat gaaatggtct gaaatagcta
    13681 acttattcat ttcgttttca atttcagtta aatctttcat ttctggacgt aacacccata
    13741 acagtaagtc tgctttttga cctgttacgt tatataacac ttggtcacct tgtccctctg
    13801 attgcgcctg tttcaaccga tccattaaac gatgaaactc agcaatcatg tctgctctat
    13861 cttcttgtgg cactaaacgc caagatgccc aatctatcgc ataaaataaa tgtaaactat
    13921 accaaccatc taaagtctcc gctgcatgac tcattcagaa cactcctttg aattaatatt
    13981 atctatacaa actaaatttt atcataaatg attcagacac aacgatttaa atgattacaa
    14041 attagtgtca tggaaatctc actataaatg ccgtataata ataggtggaa aatcgatgaa
    14101 ggaaagcaga ggaggaccat tatgtctagt ttattagatg tacttaaaga caaactttca
    14161 ggtaaaaatg tgcgtatcgt attaccagaa ggagaagatg agcgtgtatt aacagccgct
    14221 gttgatttac aagcttctga ctatgttgcg ccgatcgtat tagggaatgt tgacaaaatt
    14281 aaagcacttg ctgcagaaaa atctttaaat attgaaggtt taaatatcat ccaacctgat
    14341 acgagcgacc taaaagcaac actcgttgaa caatttgtag aacgtcgtaa agggaaagcg
    14401 actgaagaac aagcacaatc gttattaaat gatgtgaact acttcggtac aatgcttgtt
    14461 tatgcaggtc atgctgacgg tttagtgagc ggtgcagccc actcaacagc agacactgtt
    14521 cgtccagcgc ttcaaattat caaaacaaaa ccaggtgttt ctaagacatc aggtattttc
    14581 ttcatgatta aagaagatca acaatttatt ttcggtgact gtgcgattaa ccctgaatta
    14641 gccgcatcag acttagctga aattgcggtt gaaagcgcga aaactgcaca aagcttcggc
    14701 atggacccac gtgtagcgat gttaagcttc tcaacaaaag gttctgcaaa atcagacgac
    14761 actgaaaaag tcgctgaagc tgtaaaattg gcacaagaaa aaatcgacgc tgaaaactta
    14821 tcagacgtca ttattgatgg tgaattccaa tttgatgctg caatcgtacc agaagtggct
    14881 aagaaaaaag cacctgatgc aaaaatccaa ggcgacgcaa acgtatttat tttcccaagt
    14941 cttgaagcag gtaacattgg ttacaaaatt gcgcaacgtt taggcggtta tgatgccatt
    15001 ggtcctgtcc tacaaggttt aaactcacct gtgaatgact tatcacgcgg tagctctaca
    15061 gaagacgttt acaacttatc tattattaca gcagctcaaa gtttacaata atggatttag
    15121 cacataaata ttttaatggt cacacatggc gctatgtgga ccattcttct ggtttagagc
    15181 ccatgcagtc tttcgctttt gacgacacct tttcagaaag tgtcggcgcg gacttatctc
    15241 ctagtgttgt gcggacatgg gtacatcaac atacgattat tttaggcatt cacgattcac
    15301 gtttgcctta tttgaaagat ggtattcaat atttaacaga tgaacgtggc tataatgcga
    15361 ttgtgcgtaa ctcaggcggt ctcggtgtcg tcttagatca aggcatttta aatatttcct
    15421 taatgttcaa agggaagact gaagtgacta ttgatgaggc atttacagtc atgtatttgt
    15481 tgatgggtca aatgtttgaa gatgatttta cggagatagc gacacatgaa attacgcatt
    15541 cgtattgccc aggcaagttt gatttaagta tcaacaatca aaaatttgcc ggtatttcac
    15601 aacgccgtgt tcgtggtggc atcgctgttc aaatttactt gtgcgtcgaa ggttcaggaa
    15661 gtgagcgtgc agaactgatg cgtgcctttt atgaacgcgc attgaaaggt gaaaagacga
    15721 agtttactta tccagacatt catccatcta gtatggcgtc attagaagaa ttacttggcc
    15781 gtccaatcac cgtgcaagat gtcatgttta aactactcta tgcgattaag gatttaggtg
    15841 gcagtttaaa tatggatcca atgaccccac acgaatggga acggtatgaa cattattatg
    15901 aacgcatgct cgatcgtaac gcgaaaatga atgcaaaatt ggattaaatc aaaaccaccc
    15961 gtgtgaacgg gtggttttga tttgcgtcca aaagcatctg ttactggcca tcacttttaa
    16021 gggctctgag aaaatcagcc aactgtacta ctttctcagc gatccttaaa agtattctat
    16081 ttttcctcaa ctttttattc tcatcccctg taaattgtaa atggttctat gtattccata
    16141 attgtgagct gttctactac gatatcctct tgtagttgat ttcgaataca ttcttctatt
    16201 acctttttat ttcttccaac cgtatctaca taaaaaccta tgcaccaaaa ttttttattc
    16261 ccatacctat gtttcaaatg tgcatgttta tcaaaaacat taaacacatt gaatctacac
    16321 ttatttctta tgatacctga cacagcactg catattctca tgattttacg actaattagt
    16381 tctatcgtat taataataga attaattagt ttgtaataat aatatatgag agaaaagcgc
    16441 gctagcaaaa cttgctttaa tgtattttat tatttttatt aacattttga ataaaataga
    16501 gcaaatacac aaaatagcac attga
//
LOCUS       DANHOL010000046        16491 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.046, whole genome shotgun sequence.
ACCESSION   DANHOL010000046 DANHOL010000000
VERSION     DANHOL010000046.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 16491)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16491)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16491
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.046"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(203..1375)
                     /locus_tag="PTC08_001078"
     CDS             complement(203..1375)
                     /locus_tag="PTC08_001078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDK5682592.1"
                     /translation="MKKYPIAIWMLAIGAFAIGMTEFVIMGLLPNVANDLNVSVSQAG
                     QLITGYALGVAIGGPIIVMLTFRLNRKALLMLLMGIFILGNILGGLSPNYTTLMLSRI
                     VTSLAHGSFFGIGSILAASMVASQYRASAMTLMFMGLSLSNILGVPFGTLIGQKLGWH
                     MTFLIIAVIGVIALIGIMMFVPMPKEMRTASIKDELRILKEKRLWLTLGMTLFGFSSV
                     FAYFTYISSVLIDVTHIPEQFISSILIVFGVGVTLGNIVGGKLADWNLNKALMSIFII
                     FVLYFGLLYFIQFHPIIMVIGVFLFGFIGFSMSPSLQYKSTLISQEAPTLSSTLNQSA
                     FNIGNALGAFIGGLVVSTLPIASLSLIAPLLTLIGLVFLLWSIAVEQKEQVNTHSN"
     gene            complement(1568..2317)
                     /locus_tag="PTC08_001079"
     CDS             complement(1568..2317)
                     /locus_tag="PTC08_001079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HDK5682593.1"
                     /translation="MLYIFLSLLGIIGGILSGMVGIGGAIIIYPALLIIPPMLGLPSY
                     NAYIASGLTSAQVFFSTLSSSIRARQTPDFSLKLILWMGSSMLIGSALGATIAEVLTE
                     RFVNSVYVVIAILALVLIMIKIKPQTEANLKFSKVVLLLTGLVIGAISGVIGAGGAFI
                     IIPVLLVFFKIPMHTVVANSVVIAFISSIGAFMFKLFQGYIPLGDALFLVVGSMLFAP
                     LGLKIGRQMPEYVQKVLVALLIIVSILNLIF"
     gene            complement(2317..2577)
                     /gene="cstR"
                     /locus_tag="PTC08_001080"
     CDS             complement(2317..2577)
                     /gene="cstR"
                     /locus_tag="PTC08_001080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016911203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="persulfide-sensing transcriptional repressor
                     CstR"
                     /protein_id="HDK5682594.1"
                     /translation="MEYDKKMINRIKRVQGQLNGVIKMMEEEQHCKDIVTQLSASKGS
                     LQRLISIIISENLVECIKAAEENEENRQQIIDEAVNLLVKSK"
     gene            2717..3793
                     /locus_tag="PTC08_001081"
     CDS             2717..3793
                     /locus_tag="PTC08_001081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsrE/DsrF/DrsH-like family protein"
                     /protein_id="HDK5682595.1"
                     /translation="MNFSELEIKSLKKDELERLGELGQLIDVRTDEEYQEGHIRGAKS
                     WPLDQIELFKGDKNQTYYLYCRSGKRSAQASSALAKRGYNVVSLDGGFVAYSEEVEAH
                     RTEDIIINESVPLKEERQKIDLSGLQCPGPILNVSKAMQNMSEGEQIEVNVSDFGFYS
                     DVQSWVKQTGHQLIRLNQDNQGVHAVLQKSNAPANTQSKKGNGTTIVLFSGDLDKAIA
                     AMIIANGAKAAGRDVSVFFTFWGLNALKKTIQQETQVNKKGIAKMFDWMLPKQPEKMP
                     ISKFNMFGLGNFMMRYVMRQKNIDTLPQLINQAIEQDIKLIACTMSMDVMGITKEELR
                     DEVTFGGVGTYIGDTENARHNLFI"
     gene            3812..5161
                     /gene="cstB"
                     /locus_tag="PTC08_001082"
     CDS             3812..5161
                     /gene="cstB"
                     /locus_tag="PTC08_001082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="persulfide dioxygenase-sulfurtransferase CstB"
                     /protein_id="HDK5682596.1"
                     /translation="MYFKQFYNEHLSQASYLIGCQRTGEAMIIDPVRDLSEYIKTAEK
                     EGLRIDYATETHIHADFASGIRDAAEKLNATIFISGEGNESLGYRNIPEQAKFVKDGD
                     VIQVGYIKIEVLHTPGHTPESISFLLTDEGAGATQPMGLFTGDFIFVGDIGRPDLLEK
                     AVQIEGSTAVGAKQMYQSIARVRKLPDFIQIWPGHGAGSPCGKSLGAIPMTTLGYEKQ
                     NNWAFNQPDEDTFITTLTTNQPEPPKHFAQMKQMNQYGGARYEPYLVSPSYSEDRMMI
                     DLRSAHAFHGGHVVGAINIPYNQNFINQIGWYLDYDASIDLIGDKQVVDRATKTLQLI
                     GYDNVAGYKQPQGSIVTQHVHSKDFIGDEEHVLDVRTDQEWHNGHLPQAVHVPHGQLK
                     DATLPFNKEDEIYVHCQSGVRSSIAVGLLEAKGYQNVINIREGYIAFSDETKNKMVK"
     gene            5293..5853
                     /locus_tag="PTC08_001083"
     CDS             5293..5853
                     /locus_tag="PTC08_001083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682597.1"
                     /translation="MINIISAIGSIGTFIMALFYFISVSIQLYQMKMSFLPALGFNQI
                     LMTRDGEKLKLRNTSAHQTEDAQWGEDYLKLFNLGAGAAKQIKIEVYLDEENVLQSKY
                     VSILPSKESYLLPINKDVFDELDRTIENNGYESNLQIKIQYQHNVSRKVQTLYLQGHI
                     DSFNRYDESSVYELQFIQPENQNTKA"
     gene            complement(5979..6734)
                     /locus_tag="PTC08_001084"
     CDS             complement(5979..6734)
                     /locus_tag="PTC08_001084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HDK5682598.1"
                     /translation="MLLDRFVNANYDQLNDNDLHIIKTVHDHIDAMKKMKIQDLALVA
                     HTSISSIHRLCRKLGFDGYSELKTYIKLNYQKEALPQDTIALLEHDIQQTMKHLNHID
                     FSSLNQRIDEAPFIYIYGTGTAQQSVAQDVQRQILALHKKSVVLKNELELLHALDMMS
                     PCELLIIISLSGDTTRFEEVIKSIKARELSYISVTTLQDNSLAQHATFNIYVHSTPFR
                     LFNQVDNSSFVTFHLAFDMILRKYSTWKLKQPH"
     gene            7003..8589
                     /locus_tag="PTC08_001085"
     CDS             7003..8589
                     /locus_tag="PTC08_001085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIC"
                     /protein_id="HDK5682599.1"
                     /translation="MNAIKRFGSAMIVPVILFAFFGIVVGLATLFKNENIMGSIAAKG
                     TTWFNIWSVVESGGWTIFTHMELAFVIGLPISLAKKAQGRATLAALMIYLVFNNFINA
                     LLTIWPDVFGVDLSKGVENVTGVKTIAGIPTLDTSIIGAILISAIAIWIHNRFYDQKL
                     PEMLGIFQGLTFVVMIGFFLMIPVAIVTAFVWPYVQVGIKSLQGVMLHSGLIGVWLFH
                     FLERILIPTGLHHFIYTPFEFGPTAVDGGLRPYWIHHLNEFSNSTKALKELYPYGFLL
                     QGNIKMFGLLGVALAMVFSTPKANRKKVIALVVPASLTAIFAGITEPLEFTFLFIAPY
                     LFAIHAVLGATMVTLMNAFGVVGLMGGGLIEIAATNWIPLFGNHASVYIAQFIIGFIF
                     TGIYFVTFKYLIEKFDIPIPGRKGDEGAKLFTKKDYQQKQSASKKALVENEYDQKAIY
                     YLEGLGGKDNIVDVTNCATRLRLTVKDPNLVRESDYFTHEQMAHGLVKSGRSIQVIVG
                     MSVPQVRDYFEEKLEKEEEV"
     gene            8590..9915
                     /locus_tag="PTC08_001086"
     CDS             8590..9915
                     /locus_tag="PTC08_001086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-alpha-glucosidase"
                     /protein_id="HDK5682600.1"
                     /translation="MKKFNITIAGGGSTFTPGIIMMLLDYLDEFPIDTIKLYDNDEAR
                     QKTIADACEIILKERAPEMKLIASVDPEEAFTNVDFVMAHIRVGKYAMRELDEKIPLR
                     HGVVGQETCGPGGIAYGMRSIPGVLELVDFMEKYSPDAWMLNYSNPAAIVAEATRKLR
                     PNSKILNICDMPIGIEELIAKNLGLESRKEFEVNYYGLNHFGWWTDIRDKKGNSLMPE
                     VIRHVSEHGYATDGSSELEKQESWNNTLKKARDVQALDPQTIPNTYLKYYFFPTQEVE
                     HSNPEYTRANEVMDGREKFIFTQCQNIIDKGTAKDTELTVDEHASYIVDLAKAIAYNT
                     KERMLMIVENQGAIINFDPTAMVEVPCIVGSNGPEKLVVGEIPRFQKALMEQQVGVEK
                     LVVEAYEEASYQKLWQAITLSKTVPNAAVAKAILDDLIEANKAYWPELK"
     gene            complement(10006..10866)
                     /locus_tag="PTC08_001087"
     CDS             complement(10006..10866)
                     /locus_tag="PTC08_001087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HDK5682601.1"
                     /translation="MTRIAVIGPGAVGTSIAVALSDEYEVTLVGRRAQTLTFEDYVDQ
                     TTRTLSVNALQEATEPFDLIFIAVKTHQLANVIAKLPELTHDKTTLILAQNGYGMLEQ
                     LKDYRAYQAVVYISGQKKDSHVTHFRDYKLHLQSDAVTEQLAQAFSATKLELVLEPYI
                     QQAIWYKLIVNLGINTVTALGRDTARVLKDERMAELCHQLLIEGEQVARAEGIHFNTD
                     FVTSIMNIYAGYPDEMGTSMYYDTMNQHPLEVEAIQGYIYRRAKAHQLDTPHLETIYT
                     LLAYQNQSRL"
     gene            11118..11930
                     /gene="panB"
                     /locus_tag="PTC08_001088"
     CDS             11118..11930
                     /gene="panB"
                     /locus_tag="PTC08_001088"
                     /EC_number="2.1.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate
                     hydroxymethyltransferase"
                     /protein_id="HDK5682602.1"
                     /translation="MKTLNHIQQMKRDGEKISMVTAYDYPSAKQVEAANIDMILVGDS
                     LGMTVLGYDSTVDVTLEDMLHHSRAVRRGAPDTFVVVDMPFGSVGIDAKTDIENAIRL
                     YRESRGNALKVEGAHLTDFMTQATQMGIPIVAHLGLTPQSVGVLGYKMQGTTKEAAQQ
                     LIEDAQAVERAGAIALVLEAIPSDLAQVISEKLTIPVIGIGAGKGTDGQVLVYHDMLN
                     YGVDRHAKFVKQYCDLSIGIAALEKYNEEVKTGVFPSEAYTYKKQIMDEVDA"
     gene            11927..12787
                     /locus_tag="PTC08_001089"
     CDS             11927..12787
                     /locus_tag="PTC08_001089"
                     /EC_number="6.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantoate--beta-alanine ligase"
                     /protein_id="HDK5682603.1"
                     /translation="MTQRITSIQEMQQLARQFHREGKSIGFVPTMGALHDGHLTMMRQ
                     STEDNDITVISVFVNPLQFGPNEDFDAYPRQINEDEAMVSQIDVDYVFYPSVEEMYPG
                     EIGTHVTVGRLAKVLEGALRPGHFDGVVTVVNKLFNIVQPDVAYFGKKDAQQLAIVEQ
                     MVRDFNHPVKIVGVDIVREADGLAKSSRNVYLTVEERQEAVHLRQSLALAQSLYDAGE
                     RESSVIINKVTQYLQTHTSGQVQEVAVYSYPELREQAHIEGRIFISLAVKFTQARLID
                     NIIIGDETEK"
     gene            12784..13167
                     /locus_tag="PTC08_001090"
     CDS             12784..13167
                     /locus_tag="PTC08_001090"
                     /EC_number="4.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015901315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate 1-decarboxylase"
                     /protein_id="HDK5682604.1"
                     /translation="MIRTMMNAKIHRARVTEANLNYVGSITIDQDILEAVDILPNEKV
                     AIVNNNNGARLETYVIAGERGSGKICLNGAAARLVQVGDVVIIMTYAQLDETELHSHS
                     PKVAVMNEHNEIVEMIQEKEDTVIL"
     gene            13491..13727
                     /locus_tag="PTC08_001091"
     CDS             13491..13727
                     /locus_tag="PTC08_001091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001159903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682605.1"
                     /translation="MQFLEPKNKNAKSVDWEISEQVRVIVKQYAEYAERTESEAVDEF
                     LLNILDDKKFIEWIANKRSNKRIVEKMGIKDRVG"
     gene            13734..15686
                     /locus_tag="PTC08_001092"
     CDS             13734..15686
                     /locus_tag="PTC08_001092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017431446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insertion element protein"
                     /protein_id="HDK5682606.1"
                     /translation="MTKLKRLATKEDEIVDVKIPISNEELKDRAKQYDLLTPKRFATR
                     YNKMLFLPTSFKWNGSEYPIQYNYCINPFCCNFGKEQHKFKDVKGKPSRYKMTGSSKD
                     KGHKGMYCNDNPIGRGVSQNCTVTPLSNWSVVEEIKRLIEINSIQDVEPDYQFHKEGC
                     SEEESTPFNEPKQFYKRGKSRGKSQRYQCKACKKFTNVLPKREETTTYHQQKNTILPM
                     FAKMVVGRVSVSRTCDILGIGVGTYYHKLEWLYRRCLEFLERYETQPLQTKKFNEMWL
                     NTDKMHYYLNNVRKKGQGSKKYTGFEDLNMQTYIVVSAEVLSRYVFRSDVAYDWNISM
                     DELNEDTRKFKEDHLNTFSRKNDRLDWSYYPQEPSANDSENRNAYLHELGKITNRSRF
                     VDGLNVDAPYTTTAHYWLIKQMVNADEWRMISDDDFSIRNAFYRVFTKELRLSDAHHF
                     ICQVNKTKSRKQCLKEFGQAKAELLDWGDIRGFKTKFLRTLASHYLTELLTSHQFHEE
                     AISKDGERYRKYADNPIKHPLATKDKGFYSVDCRTDLSALEPNEIAKMLLNVNDHSTN
                     SFIQQIRRYISSLERPLTTARGDKKSYIYANFNPKYAQFAITILRTYYNFCRPFKSAD
                     KKVLTPAQRLGITDKQFDWKDIIYFK"
     gene            complement(15758..16255)
                     /gene="dfrG"
                     /locus_tag="PTC08_001093"
     CDS             complement(15758..16255)
                     /gene="dfrG"
                     /locus_tag="PTC08_001093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000868795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimethoprim-resistant dihydrofolate reductase
                     DfrG"
                     /protein_id="HDK5682607.1"
                     /translation="MKVSLIAAMDKNRVIGKENDIPWRIPKDWEYVKNTTKGHPIILG
                     RKNLESIGRALPDRRNIILTRDKGFTFNGCEIVHSIEDVFELCKNEEEIFIFGGEQIY
                     NLFFPYVEKMYITKIHHEFEGDTFFPEVNYEEWNEVFAQKGIKNDKNPYNYYFHVYER
                     KNLLS"
BASE COUNT         5503 a         2763 c         3359 g         4866 t
ORIGIN      
        1 tcacatttta attgcacaaa ttaaatttat cgcaaattat atattaaatt ttctaaattc
       61 aatgtaaaat ttaaaaacga atattaaatt aaaaaccgcc acatatcttt atgtagcggt
      121 gaatcagcag cataatgaaa catatagaga gggcaacata gtattaaaaa atttttaaat
      181 gtcacatttt ataaattaaa ctttaattcg aatgtgtatt gacctgttct ttttgttcga
      241 cagcaatact ccataataaa aagacgagtc caattaatgt gagtaatggc gcgattaaac
      301 ttagactagc gatggggagt gtgctgacaa caagaccgcc gataaaagca cctaatgcat
      361 ttccgatatt aaaggcggat tgattgagtg tactggaaag tgtcggcgct tcttgggaaa
      421 tgagcgtact tttgtattga agtgaagggc tcatgctaaa gccaataaaa ccgaaaagaa
      481 agacgccgat caccatgatt atcgggtgga actgaatgaa gtagagcagt ccaaagtaaa
      541 gcacaaaaat aataaaaatg ctcattaatg ctttgtttaa attccaatct gcaagcttgc
      601 cacctacaat attaccgagt gtcacgccaa caccgaatac aatcagaata gatgaaatga
      661 attgttcagg aatgtgggtc acatcgatga gtacagatga aatataagta aagtaggcga
      721 acacactact aaaaccgaac aatgtcatcc cgagagttaa ccacagtctt ttttctttta
      781 aaatgcgtaa ttcatctttg atagaagcgg tacgcatttc ttttggcatc gggacaaaca
      841 tcataatgcc gatgagtgca atgacgccaa tgacagcaat aattaaaaac gtcatgtgcc
      901 aaccgagttt ttgtccaatt aatgtaccga atggtacgcc gagaatgttg ctcaggctga
      961 gacccataaa cattaatgtc attgcacttg cacgatattg gcttgcgacc atacttgcag
     1021 ctaaaataga gccaatgccg aaaaatgagc catgtgcaag tgatgtgacg atacgactga
     1081 gcatcaatgt cgtgtaattc ggactgagac caccgagaat gttaccgaga ataaaaatgc
     1141 ccatcagcaa cattaacaac gctttacggt taagtcggaa agtgagcatg acgatgatag
     1201 ggcctccaat cgcgacacct aaagcgtaac cagtaatcaa ttgtcctgcc tggctcacag
     1261 acacatttaa atcattcgcc acgttaggaa gtaagcccat gatgacgaat tcagtcattc
     1321 caatcgcaaa tgccccaatc gctaacatcc atattgcaat aggatacttc ttcataatgg
     1381 atacctcctg atttatcttt ttaacagagt tatcgtacat atcttatagt tataattcaa
     1441 tatgtgggtc tttaccagaa aatcaaagta agctcttgtt cgtatagttt tgttgatatt
     1501 tagttacctt atgaactagg tttgatttgt atggttggaa gagctgattt cattaaagta
     1561 cgacggctta gaaaatcaaa ttcagtatag agacgatgat aaggagagca accaacactt
     1621 tttggacgta ctcaggcatt tggcgtccta tttttaagcc aagtggcgca aataacatac
     1681 ttccaacaac taagaataat gcatcaccaa gcggaatata cccttgaaaa agtttaaaca
     1741 taaaggcccc tatagaagaa ataaaagcaa tcacaacact atttgccacg acagtatgca
     1801 tcggtatttt gaaaaaaact aataatactg gaataattat aaaggcgcct ccagccccaa
     1861 tcacaccaga aattgcacca atgactaaac ctgtcaatag cagtacaact ttactgaatt
     1921 ttaagtttgc ttctgtttgt ggtttgattt taatcattat taagacgagt gccaatatag
     1981 caatgacaac atatacgcta tttacgaatc tctctgttaa tacttctgca attgtagctc
     2041 ctaacgcact accgatgagc atgctacttc ccatccaaag aatgagttta agagaaaaat
     2101 ccggtgtttg acgcgcacgt attgaactgc ttaaagtact aaaaaatact tgcgcagatg
     2161 taagtcctga agcgatataa gcattgtaag aagggaggcc aagcataggg ggaataatga
     2221 gtagtgcggg ataaataata atcgcaccgc ctatacctac catacccgag agaataccac
     2281 caataatacc gaggagcgag agaaaaatat aaagcattat ttacttttca ccaataagtt
     2341 cacagcttcg tcaatgattt gttgtctatt ttcttcgttt tcttctgctg ccttaataca
     2401 ctctactaaa ttctcactaa taataatact aatgagacgt tgtaacgaac ctttagaagc
     2461 acttaattgt gtcacaatat ccttgcagtg ctgttcttct tccatcattt taatgacgcc
     2521 atttaattga ccttgaactc ttttaattcg gttaatcatt tttttatcgt attccatacc
     2581 ttatgtcctc ctaaagtaat atatgaggtt tatcatataa aaaagcaaga aatttgtcaa
     2641 atacccccgt aggtatttga caagagattc agcatccatt attatacccc tataggtatt
     2701 tggaggaggt ctaatattga attttagtga acttgagata aaaagtttaa agaaagatga
     2761 acttgagcga ttaggagaac tagggcaatt gatagatgtt cgtacggatg aagaatatca
     2821 agaaggacac atccgagggg caaaatcttg gccgttggat caaattgaat tatttaaagg
     2881 tgataaaaat caaacgtatt atctttattg cagaagtgga aagagaagtg cacaagcgag
     2941 ttctgcttta gctaaaagag gatataatgt tgtttcatta gatgggggat ttgtcgcata
     3001 cagtgaagag gtggaggctc atcgtacgga agatatcatt attaatgagt ctgtgccttt
     3061 aaaagaagaa cgtcaaaaaa tagatttatc aggtttacaa tgcccaggac ctattttaaa
     3121 tgtgagtaaa gcaatgcaga atatgtcgga aggtgaacag atagaagtta atgtttcaga
     3181 ttttggtttt tacagtgatg ttcaaagttg ggtgaagcag acagggcacc agttaatacg
     3241 cctaaatcaa gataaccaag gtgttcatgc agtattacaa aaaagtaacg cacctgcaaa
     3301 cacgcaaagt aaaaaaggca atggcacgac aatcgtgttg tttagcggtg atttagataa
     3361 agctattgcg gcaatgatta ttgctaatgg ggcaaaagca gctggacgag atgtctctgt
     3421 cttttttact ttttggggat taaatgcatt gaaaaaaact atacaacaag agactcaagt
     3481 gaacaaaaaa ggtatagcca aaatgtttga ttggatgtta ccgaagcaac cagaaaagat
     3541 gccaatttct aaatttaata tgtttggttt aggtaacttt atgatgcgtt atgtcatgag
     3601 acaaaaaaat attgatacac taccacagtt aataaatcaa gcgattgaac aagacattaa
     3661 attgatcgca tgtacgatga gtatggatgt gatggggatt acgaaagagg agttaagaga
     3721 tgaagtcacg tttggcggtg taggaactta tattggtgac actgaaaacg cacgccacaa
     3781 tttatttata taatgttaag gagagattga tatgtatttc aaacaatttt acaatgaaca
     3841 tttgtcacaa gcctcttatt taattggatg tcaacgtaca ggagaggcga tgattatcga
     3901 tccagtcaga gacctgtcag aatatattaa aacggcagaa aaagaagggt tgcgtattga
     3961 ttatgccact gaaacacata ttcatgctga ctttgcttct ggtatacgcg atgcagcgga
     4021 aaaattaaat gcgaccatct ttatttcagg tgaaggaaat gaatctttag gataccgtaa
     4081 tattcctgaa caggcaaagt tcgttaaaga tggcgatgtc attcaagtgg gttacattaa
     4141 aatcgaggta ttacacacgc ctggacatac ccctgagagc attagctttt tattgacaga
     4201 tgaaggtgca ggtgcaacac aaccgatggg actatttaca ggagacttta tttttgtggg
     4261 agacatcggt agacctgatt tattagaaaa agcggtacaa atcgaagggt ctacagcagt
     4321 gggtgccaag caaatgtatc aatctatagc tcgtgtacgt aaattgccag actttattca
     4381 aatctggcca ggacatggtg caggcagtcc atgcggtaaa tcgttaggtg caattcctat
     4441 gacaacatta ggttatgaaa aacaaaataa ctgggcattt aatcaaccag atgaagatac
     4501 atttattaca actttaacaa caaatcaacc cgaaccccct aaacattttg cacaaatgaa
     4561 acaaatgaat caatatggag gtgcacgcta tgagccttat cttgtgagcc cttcttatag
     4621 tgaagaccga atgatgattg atttacgtag tgcgcatgca tttcatggtg gtcatgtggt
     4681 aggtgcgatt aatattccgt ataatcaaaa ctttattaat caaataggat ggtatctaga
     4741 ttatgatgca tcgattgatt taattggtga taaacaagtg gttgatcgtg caacgaaaac
     4801 attgcaattg attggctatg ataatgtagc aggctataag caacctcaag gcagtatcgt
     4861 aacacaacat gtgcatagta aagattttat aggagacgaa gaacacgttt tagatgttcg
     4921 aacagaccaa gagtggcata atggacattt accacaagca gtgcatgtgc cacatggtca
     4981 actaaaggat gcaactttac ctttcaataa agaagatgaa atttatgtcc attgccaatc
     5041 aggtgtgaga agttctattg ctgtaggtct actagaggca aaaggttatc aaaatgtaat
     5101 caatattcgt gaaggctaca ttgctttttc ggatgaaacg aaaaataaaa tggtgaagta
     5161 gatagaatca ctacaacata gtaggataat gccctccgta cgcgcttggt aatagttgat
     5221 atcctcagtt taaaacggtc tttaacgtgg aataagttta aaataaaatt gatttattag
     5281 aggtgtatcg agatgattaa tatcatttct gcgataggtt cgattggtac gtttattatg
     5341 gcattattct attttatctc tgtatcaata cagttgtacc aaatgaaaat gagtttttta
     5401 cccgcactcg gatttaacca aattttgatg acgcgtgatg gagaaaagtt aaaattaaga
     5461 aatacatcag cacatcaaac agaagatgct caatggggcg aggattattt gaaattattt
     5521 aaccttggtg cgggtgcggc taaacaaatc aagatagaag tgtacttgga tgaagaaaac
     5581 gtgttacaga gcaagtatgt cagtatttta ccgagcaaag aaagttatct tctaccgatt
     5641 aacaaggacg tatttgacga attagatcgt actattgaaa ataatggcta tgaatcgaac
     5701 ctccaaatta aaattcaata tcaacataac gtcagtcgaa aagtacaaac gctctactta
     5761 caagggcata ttgatagctt caatcgttac gatgaaagct ctgtctatga attacaattt
     5821 atacaaccag aaaatcaaaa cacaaaagca tagtttgata tgtgcaaggg tagtgcgtcc
     5881 actgtggtgg catacccttg ttttttaatg gattcaaaca gcaccaacat tgttaaatca
     5941 caaacgacag catagattta gctactgcag tatttaaatt aatgtggttg ctttaacttc
     6001 caagtgctat attttctcaa aatcatatca aaggcgagat ggaaagtgac gaaactagag
     6061 ttgtcaactt gattgaacaa acggaaaggt gtgctatgaa catagatgtt aaacgttgca
     6121 tgttgcgcta acgaattgtc ttgaagtgtc gtcacactaa tataggaaag ttctcgtgct
     6181 ttaatagatt tgatgacttc ttcaaaacgt gtagtatcac cggaaagcga aataataatg
     6241 agcaattcac atggcgacat catatcgagc gcatgtaaaa gttctaattc atttttcaag
     6301 acgacagatt ttttgtgcaa tgcgagaatt tgacgttgta catcttgtgc gacggattgt
     6361 tgtgctgtgc ctgtcccata aatataaata aaaggcgctt catcaatacg ttggttaagg
     6421 ctcgaaaagt cgatgtgatt gagatgcttc atcgtttgtt gaatatcgtg ttcaagtaat
     6481 gcaatagtat cttgtggtaa tgcttccttt tgatagttga gtttaatata cgtttttaat
     6541 tcgctatagc catcaaaccc taatttacgg caaagacgat gaatggacga aatggaagtg
     6601 tgtgcgacta aagctaagtc ttgaattttc atcttcttca tagcatcaat atggtcatga
     6661 acggttttga taatatgtaa atcattgtcg ttcaactggt catagtttgc atttacaaat
     6721 cgatctaata gcaccttcaa cgcctcctga aaatattttc atcaattgta aatataaccc
     6781 aatcgtacta tgtgcttcca aaaagtgtca aatgcattcc aaaatgtaag cgcttcaatt
     6841 atattgaggc tagatgaaat gcatcgtttg tcgacacagt tcatcaaatg aaaaagatta
     6901 gaatgattaa aagtaattca gagtagtcac gcgtgtttaa tcataacagc gcgatatcgg
     6961 ttcgcacaga aatcttctaa tctgatggag ggatttttgc tcatgaatgc aatcaaacgt
     7021 tttgggagtg cgatgattgt tcctgttatt ctatttgcgt ttttcggtat tgttgttggg
     7081 ttagcgacac tatttaaaaa cgaaaatatt atggggagca ttgcagcaaa aggaacaacg
     7141 tggtttaaca tttggagtgt ggttgagagt gggggttgga ccatcttcac ccacatggag
     7201 ttagcttttg tgattggttt gcctatctca ttagcgaaaa aagcacaagg gcgtgcaact
     7261 ttagcagcat tgatgattta tctcgtattt aataatttca tcaatgcatt actgacgatt
     7321 tggccggatg tgtttggggt tgatttaagt aaaggggtcg aaaatgttac gggtgttaaa
     7381 acgattgcag gtatcccgac attagataca agtattatcg gtgccatttt gatctcagcg
     7441 attgcgattt ggatacataa ccgtttttat gatcaaaagt tgcctgagat gttagggatt
     7501 ttccaagggc ttacatttgt tgtcatgatt ggtttctttt tgatgattcc agttgcaatt
     7561 gtcacagcat ttgtatggcc atacgtccaa gtagggatta aatcattaca aggtgtgatg
     7621 ttacattcag ggctcatcgg tgtatggtta ttccactttt tagagcgtat tttaatacca
     7681 actgggttac atcatttcat ttatacccca tttgagtttg ggccaactgc ggtagatggt
     7741 ggtttgagac cttattggat tcatcatctt aatgaatttt ctaactcaac gaaagcatta
     7801 aaagaactct atccatatgg tttcttatta caaggaaata tcaaaatgtt tggattgctt
     7861 ggtgtcgctt tagcaatggt gttctcaaca ccaaaagcga atagaaagaa agtcatcgca
     7921 ttggttgtac cagcttcatt aactgcaata tttgctggca ttacagagcc attagagttc
     7981 acattcttat tcattgcacc atatttattc gcgattcatg cagtattagg cgcaacaatg
     8041 gtgacattaa tgaatgcgtt cggtgtcgtt ggtctgatgg gtggtggctt gattgaaatt
     8101 gctgcgacga actggattcc attattcggt aatcatgcga gtgtatatat cgcacaattc
     8161 attatcggct ttattttcac aggtatttat tttgtgactt tcaaatattt aattgaaaag
     8221 tttgatattc caattccagg acgtaaaggt gatgaaggtg ctaagttgtt tacgaaaaaa
     8281 gattatcaac aaaagcaaag tgcgtccaaa aaagcattag ttgaaaatga atatgaccaa
     8341 aaagcgattt attatttaga aggtctcggt ggcaaagaca acattgttga tgtgacgaac
     8401 tgtgcaacac gtttacgttt aactgttaaa gatccaaatt tagtgagaga aagtgactac
     8461 tttacacatg aacaaatggc ccatggatta gtgaagagtg ggcgtagtat tcaagtgatt
     8521 gttggcatga gtgtgccaca agtcagggat tactttgaag aaaagttgga aaaagaggag
     8581 gaagtataaa tgaagaagtt taatattaca attgcaggtg gcggaagtac gtttacaccg
     8641 gggattatta tgatgttatt ggattattta gacgagtttc caattgatac catcaaactt
     8701 tatgataatg atgaagcccg tcaaaaaacg attgcagacg catgtgaaat cattttgaaa
     8761 gagcgtgcac cagaaatgaa actgattgcc agtgtggatc cagaagaagc atttacgaat
     8821 gtagattttg tgatggcaca cattcgagta ggtaaatatg cgatgcgtga attggatgaa
     8881 aagattccat tacgccatgg tgtcgtcggt caagaaactt gcggacctgg tggtattgca
     8941 tacgggatgc gttctattcc aggtgtgctt gaattggttg actttatgga aaagtattct
     9001 ccagatgcgt ggatgctcaa ttactcaaac cctgcagcca ttgtagctga ggcaacacgt
     9061 aaattacgtc cgaattctaa aatattgaac atttgcgata tgccgattgg aattgaagaa
     9121 ctgattgcga aaaatttagg acttgaatct cgtaaagagt ttgaagtgaa ttattacggt
     9181 ttaaaccact ttggatggtg gacagatatt cgcgataaaa aaggtaattc tttaatgcct
     9241 gaagtaattc gtcatgtcag tgagcatggt tatgcgacag atggtagttc tgaattagaa
     9301 aagcaagaga gctggaacaa tacacttaaa aaagcgcgtg acgttcaagc gttagatccg
     9361 caaacaatcc cgaatacgta tttgaaatat tacttcttcc caacgcaaga agtagaacat
     9421 tcgaatccag aatatacacg tgcgaatgaa gtcatggatg ggcgtgaaaa gtttatcttt
     9481 acgcaatgtc aaaatatcat cgacaaaggc acagcgaaag acacggaatt aacggttgat
     9541 gagcacgcgt catacattgt agaccttgca aaagcaatcg catacaatac gaaagagcgt
     9601 atgttgatga tcgttgaaaa ccaaggcgca attattaact ttgatccaac agccatggta
     9661 gaagtgcctt gtattgtagg tagcaatggt ccagaaaagt tagtcgttgg cgaaattcca
     9721 cgcttccaaa aagcattaat ggaacaacaa gtcggtgtgg aaaaacttgt tgtagaagca
     9781 tatgaagaag catcatatca aaaactatgg caagcgataa ctttatcaaa aacagtaccg
     9841 aatgcagcag tagcaaaagc gattttagat gatttaattg aagcgaacaa agcgtactgg
     9901 ccagagttga aataagcata aagaaggaag tccggggagc gtgaattttc tcagacttcc
     9961 ttattcaaat tttccaatcc aagtattgta actacttact tttcactata acctactttg
    10021 attttgatag gcgagcaagg tgtaaatggt ctccaaatgt ggtgtgtcca attgatgggc
    10081 tttggcacgt cgataaatgt aaccttgtat cgcttctact tctaaaggat gttgattcat
    10141 cgtatcgtaa tacatgctcg tccccatttc atcaggatag cctgcataaa tattcatgat
    10201 tgatgtgacg aaatccgtat tgaaatgtat cccttctgca cgtgccactt gttcgccttc
    10261 tattaacaat tggtggcaaa gttcagccat ccgttcatct ttaaggacac gggcagtatc
    10321 gcgtccgagt gcagtgacag tattaatacc aaggttgaca attaatttat accaaatcgc
    10381 ttgttgaata taaggctcca acacgagttc taactttgtt gctgaaaatg cttgtgcgag
    10441 ttgttctgtg acggcatcag attggagatg tagtttgtag tctctgaagt gcgtcacatg
    10501 gctgtctttt ttctgaccac tgatataaac aaccgcttga taggcgcgat aatctttcaa
    10561 ttgttcaagc ataccatagc cattttgtgc aagaataagg gtggttttgt cgtgtgtgag
    10621 ttcgggtagt ttggcaatca cattcgccaa ttgatgtgtt ttcacggcga taaaaattaa
    10681 atcaaacggt tctgtcgctt cttggagtgc attcacggaa agtgtacgag ttgtctgatc
    10741 tacataatct tcaaatgtta aagtttgagc acgacgtccg accagtgtga cttcgtattc
    10801 atcggatagg gcgactgcaa tagatgttcc tactgcacct ggaccaataa cagcaattcg
    10861 agtcattgga gatcaccttt cttctaatta atttaagtat ttttgttcca catatgaata
    10921 tgctttaatt tattatgttt tggaaaagtt gtaaagtgta gataaacgat aaatgagaag
    10981 tatatgtgat taatagaagt gaatgttcaa atacttttca taattaaagg aagcgttctg
    11041 caaaaataaa aaaatcaatg gaaaattcaa gtgacttgat ttactattga tataataaaa
    11101 attaaagggt gaaagaattg aaaactttaa atcatattca gcaaatgaag cgtgacggtg
    11161 aaaaaatttc aatggtgacc gcttatgatt acccaagtgc gaaacaagtt gaagcggcta
    11221 atatcgatat gattctagtg ggtgattcac taggtatgac ggtattaggc tatgacagca
    11281 cagtcgatgt gacacttgaa gatatgttgc atcatagccg tgctgttcgt cgtggtgccc
    11341 cagacacgtt tgtggttgtc gatatgccat ttggttcagt aggtatcgat gctaaaacag
    11401 atattgaaaa tgcgattcgt ctttatagag aaagtcgtgg aaatgcttta aaagtagaag
    11461 gtgcacattt gactgacttt atgacacaag caacacaaat ggggattccg attgttgcac
    11521 atctcggttt gacacctcaa agtgttggcg tattaggtta taagatgcaa ggtacaacga
    11581 aagaagcggc acaacaactg attgaagatg ctcaggcagt tgaacgtgca ggtgcgattg
    11641 cattagtgct tgaagcgatt ccgagtgatc tcgcccaagt catttcagaa aaattaacaa
    11701 ttccagtgat tggtatcggc gcaggtaaag gaacagatgg ccaagtgttg gtttatcacg
    11761 atatgctcaa ttatggcgtg gatcgtcatg cgaaattcgt gaaacagtac tgtgacctct
    11821 caatcggtat cgctgcgtta gaaaaatata atgaagaagt gaaaacaggt gtatttccat
    11881 ctgaagcata cacttataaa aagcaaatta tggatgaggt agacgcatga cacaacgtat
    11941 aacatcaatt caagaaatgc aacaactcgc aagacaattt catcgtgaag gcaagtcaat
    12001 cggttttgta ccgacaatgg gagcgttaca tgatggtcat ttaacgatga tgcgtcaatc
    12061 aacagaggac aatgacatca ccgtcatcag tgtctttgtt aacccattac aattcggtcc
    12121 aaatgaagat tttgatgcct atcctcgtca aattaatgaa gatgaggcga tggtcagtca
    12181 aatcgatgtg gattacgtct tttatccctc agtagaagaa atgtacccag gtgaaatcgg
    12241 cactcatgta acagtggggc gtttagcaaa agtattagaa ggtgcgctac gtccaggcca
    12301 ttttgatggt gttgtgacag tagtcaataa gttgttcaac attgttcaac ctgatgtcgc
    12361 atactttggt aaaaaagacg cccaacaact cgcaattgtc gaacaaatgg tccgcgattt
    12421 taaccacccc gttaaaattg tcggtgtcga tattgtgcgt gaagcggatg gattagcgaa
    12481 aagttcaaga aatgtttatt taacagtgga agaacgacaa gaagctgtcc atttacgtca
    12541 aagtttagca ctcgcacagt cgttgtatga tgcgggtgag cgcgaaagta gcgtcattat
    12601 taataaagtg acacaatatt tacagactca tacaagtggt caagttcaag aagttgccgt
    12661 atacagttat cccgaattaa gagagcaagc acacatagaa ggacgtattt ttatatcatt
    12721 agccgtgaag tttacccaag cacggttaat cgataacatt attattggag atgaaacaga
    12781 aaaatgataa gaactatgat gaacgcaaaa attcatcgtg cacgtgtcac agaagccaat
    12841 ttgaactatg tcggtagtat tacaatcgat caagacattt tagaggcagt tgatattttg
    12901 ccaaacgaaa aagtcgcgat cgtcaacaat aataacggtg cacgtttaga aacatacgtc
    12961 attgccggtg aacgcggcag tggtaaaatt tgtttaaacg gtgcagccgc gcgtctcgta
    13021 caagtgggcg atgtggtcat tattatgaca tatgcgcagt tagatgagac ggagttacat
    13081 tcacattccc ctaaagtagc agtcatgaat gagcataatg aaattgtgga aatgattcaa
    13141 gaaaaagaag atacggtgat tctttaaata tacagtaaga taggctagga taacgttatt
    13201 cctagcctgt ttttatgaat gatactacaa aaaaagaggc acccgtatag gattaagtag
    13261 ttcagttttg gagtacaaaa agtgaaaatg taaacctaaa tgagtatcaa attgcaactg
    13321 aatttgatac tcgtttttta ttgttaaatc aacgtttgtt gttaatttac accacaaaat
    13381 gtaagttaaa atgtatataa aaatgcgaac gtgaaataat tattgtagga atgcaaattg
    13441 gtgtgttaaa atggttacaa tttactaagc aaaaaggggt gcattttcct atgcaatttc
    13501 ttgagccaaa aaataagaac gctaagtctg tggattggga aatatcagag caagtaaggg
    13561 tgatagttaa gcaatacgct gaatatgcag agcgtactga aagcgaagca gtggatgaat
    13621 tcttattgaa cattttagac gataagaagt ttattgaatg gattgccaac aagcgaagta
    13681 ataagcggat tgttgaaaaa atgggtatca aagatagagt gggttgatag acaatgacca
    13741 agcttaaaag attagccacg aaggaagatg aaattgtaga tgttaaaatt ccgatttcaa
    13801 acgaagaatt aaaagatagg gctaaacaat atgatttatt aactccaaaa cgatttgcaa
    13861 caaggtataa caaaatgttg ttcttgccaa cgtcttttaa atggaacggt tctgaatatc
    13921 ccattcaata taattactgc atcaatccgt tttgttgtaa ttttgggaaa gaacagcaca
    13981 aattcaaaga tgtaaaaggg aaaccaagtc gatataaaat gactggtagt tccaaagata
    14041 aaggtcataa aggtatgtac tgcaatgaca atcctattgg cagaggtgta tcgcaaaact
    14101 gtacagtaac ccctttatct aattggtctg ttgttgaaga aattaaacgc cttatagaaa
    14161 tcaatagcat ccaagatgtt gagccagatt atcaatttca taaagaaggc tgctcggaag
    14221 aagaatcaac cccattcaat gagccgaagc aattttacaa aagggggaaa agtaggggca
    14281 aatctcaacg ctatcaatgt aaggcgtgta agaagttcac taatgttcta ccaaaaagag
    14341 aagaaaccac tacttatcac caacaaaaga acaccattct tccaatgttc gctaagatgg
    14401 ttgttggaag ggtttcagtc agtcgtactt gtgatatttt aggaattgga gttggaacct
    14461 actatcataa gctggagtgg ctgtataggc gttgtttgga gtttttagaa cgatatgaga
    14521 cacaacccct tcaaacaaag aaatttaacg agatgtggct taatacggac aagatgcact
    14581 actacctaaa taacgtccgt aagaaaggac aaggttcaaa gaaatatacg gggtttgaag
    14641 accttaatat gcaaacgtat atagttgtat ctgctgaggt cttatcaaga tatgtgttcc
    14701 gttctgatgt tgcctatgat tggaatattt caatggatga attaaatgaa gatacaagaa
    14761 aattcaaaga agaccatctc aatactttta gtcgtaaaaa tgataggtta gattggtctt
    14821 attatccaca agaaccatcc gctaacgata gcgaaaatag gaatgcttat cttcacgaat
    14881 tagggaaaat tactaatagg agtagatttg tcgatggttt aaatgttgat gctccttata
    14941 ctacaactgc tcactattgg ttaattaaac aaatggttaa tgccgacgaa tggcgaatga
    15001 ttagtgatga tgacttctct attagaaacg ccttttatag agtattcacg aaagaattaa
    15061 ggttgagcga tgcacatcat tttatttgcc aagttaacaa gacgaaaagc agaaaacaat
    15121 gcttaaaaga attcggacaa gcaaaagcag aactgctcga ttggggagat atcagaggat
    15181 tcaaaacaaa gtttctacgg actttggcat ctcattatct aactgaatta ctaacaagtc
    15241 atcaattcca cgaagaggct attagtaaag atggagaaag atatcgcaaa tatgccgata
    15301 accctatcaa acatccatta gccactaagg ataaaggatt ttattcagtt gattgtagaa
    15361 cggatttatc tgctctggaa ccaaacgaaa tcgcaaagat gctattaaat gttaatgacc
    15421 attcgaccaa tagctttatt caacagataa gacgttatat atcatctctt gaaagaccat
    15481 taacaacagc tcgtggtgat aagaagagct atatttacgc taacttcaat ccgaagtatg
    15541 ctcaatttgc gattacaatt ctaagaactt actacaactt ttgtcgccct tttaaatcag
    15601 cggataaaaa ggttttgaca cctgctcaaa gattagggat tacagataaa caatttgatt
    15661 ggaaagatat aatttatttc aaatgacaaa aagagcttgg agtaatccca agctcttgtg
    15721 ctttatcttt actgttcttc ttcaattaac gcacccgtta actcaataag ttttttcttt
    15781 catatacatg aaaatagtag ttatacggat ttttatcatt ctttatccct ttttgggcaa
    15841 atacctcatt ccattcctca taattcactt ctggaaaaaa agtatctcct tcgaattcat
    15901 gatgtatttt tgtgatgtac attttctcaa cataagggaa aaacaaatta taaatctgtt
    15961 ctcctccgaa aataaaaatt tcttcttcgt ttttacataa ctcaaaaaca tcttctattg
    16021 aatgaacaat ttcacaacca ttaaaggtaa accccttatc tctcgtcaga ataatatttc
    16081 ttctgtcagg taaggctctt ccgattgatt caaggttctt cctacctaat attatcggat
    16141 gtccctttgt agtattttta acatattccc agtccttggg aatcctccaa ggaatgtcat
    16201 tctctttgcc aatcactcta ttcttatcca tcgcagcaat caaagaaact ttcatttata
    16261 acacagcctt tttaactaat ttaccatcta atttcttatt tctatcaaaa aaccttttct
    16321 cattatcctg cccgttagtt gaataagcaa ttttttctat aagttatatt atcataatac
    16381 cacaaaatca caaattttca ttcaattatc attttcaatt gcattttata aatcattttg
    16441 tatgtaattt ggtatgtaag ttaaaatgaa aaaagtagtc cattttgaag t
//
LOCUS       DANHOL010000047        16343 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.047, whole genome shotgun sequence.
ACCESSION   DANHOL010000047 DANHOL010000000
VERSION     DANHOL010000047.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 16343)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16343)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16343
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.047"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            112..780
                     /locus_tag="PTC08_001094"
     CDS             112..780
                     /locus_tag="PTC08_001094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-hairpin-helix domain-containing protein"
                     /protein_id="HDK5682608.1"
                     /translation="MFSVNQIIALVKQYKLQTAVVIAIFIAIGGWLVFNSGEEDPAKD
                     NLAMQQTQPIEVHQAKSKSKDKKEQNSQTPQKIIVDIKGAVKKPNTYEMQSDDRMKQL
                     LDKAEPLNTADLSRVNLAEKLTDQKMIYIPDQREVTTSNSSHASQQDDTSAASTSQNI
                     SVNLNTADEKELTQIPGIGPSKAQTIIKHREENGPFQSVEDLKNVKGIGEKTFEKLKN
                     YLTV"
     gene            866..1324
                     /locus_tag="PTC08_001095"
     CDS             866..1324
                     /locus_tag="PTC08_001095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComE operon protein 2"
                     /protein_id="HDK5682609.1"
                     /translation="MKRIQWHEYFMAQSHLLALRSTCTRLSVGATITKDNRIIAGGYN
                     GSVSGEVHCIDEGCLMEGGHCIRTIHAEMNAILQCSKQGVSTENATIYVTHFPCLNCT
                     KSIIQAGIKTIYYAEDYHNHDYAVKLLEQSGVHYEKISFNRQHIAEYLLE"
     gene            1327..3555
                     /locus_tag="PTC08_001096"
     CDS             1327..3555
                     /locus_tag="PTC08_001096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA internalization-related competence protein
                     ComEC/Rec2"
                     /protein_id="HDK5682610.1"
                     /translation="MTYWLITYIIGNIAYHHLLTACFIYSVLACSLYLKKMSWLFIIS
                     TLIVVLIGYTIETIQHKNEPSILTATPTSSHKTISVHLTTLPIVTDQLLTVQATFNKQ
                     EILIKGRIKPQQFIPDAHFLLNHQCQLTGSFQPPLYRQQRPLFAVKKITFDQCHMTTP
                     TLKQRITYVRSVVTERLLNSQLFGRGELIAIATGNANYLDKDMKSLAQQLGISHLFAV
                     SGTHVSIFIFMFYAIGKRLPLPMYYTEVGLILFLPVFLIFVGTSPSATRAVAMTLLLL
                     IVSRYFHMTSLQSLLLVYFVMSLMNSDYHYHLGFLYSFLISGILILMKDIFTERPIYQ
                     SLFLGSYIAVIAAIPLNYVQLNEIQWQGLISNLFFIPLYSIIIIPLSFILAIIAIVTP
                     AFLSMFTHFTHVIFDIQAFLLKRLTVLERFTLPIPDFGEFGFLCCTIATFILLYLLSQ
                     RRYIISIVLVCCLCILLWQVHPRFTNQMTMIDVGQGDAILFQSQTGETLMIDTGGAYE
                     HHQRKQSNINITKKNIYPLFKKLGIHQIDYLVITHAHQDHMGEIEHLSQYVNIKNVVI
                     NPSHFDDEKFQKVQHVIASEHAQLYSYEDLSRIVLGDFQFQFFNTDIPESEDPNEHSI
                     VTLATIHDIHVLLMGDATTKNEDVLLKKYSLPRIQILKVGHHGSRTSSSKTFLSQIHP
                     DIALISAGKQNMYHLPHPLTLQKLHDIHAKIYNTADNHHIHVRFDAFNEAGYTLRTEP
                     LN"
     gene            3623..4597
                     /gene="holA"
                     /locus_tag="PTC08_001097"
     CDS             3623..4597
                     /gene="holA"
                     /locus_tag="PTC08_001097"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HDK5682611.1"
                     /translation="MSNIHVIHGEVPELIDRETEQLTQKYLGNEPKDDFNYVKYNLYE
                     TTLNTIIEEAMTLPFFSDKKIIVVQNSYIFTGEKPPKEAQTNADSLLEFIEKYDEASL
                     IIFQVQAVKLDERKKVVKALKKVANIKKIEQMTEQEMQKWIHQYLNQSYKEIKQDALE
                     ALIQLTGIHYRMIKQELDKLLLFVGDRPTINKEDVQTIVNRSLEQNVFLLTDYIQKGQ
                     KAQAISLVKDLIQLKEEPIKLLALITSNYRLYYQSKILNQKGYSGQQIAKTVGVHPYR
                     VKLALNQARKYDLDTLLTIMDVCTETDYQLKSSYMDKVLILELFIMKL"
     gene            complement(4771..5019)
                     /locus_tag="PTC08_001098"
     CDS             complement(4771..5019)
                     /locus_tag="PTC08_001098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S20"
                     /protein_id="HDK5682612.1"
                     /translation="MPNIKSAIKRVRTTHTAESKNISQKNDMRSAVKSAKKAIETNAD
                     NKQELVSKAVKRIDKAAQKNLIHSNKADRMKSKLMSAK"
     gene            5342..7165
                     /gene="lepA"
                     /locus_tag="PTC08_001099"
     CDS             5342..7165
                     /gene="lepA"
                     /locus_tag="PTC08_001099"
                     /EC_number="3.6.5.n1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor 4"
                     /protein_id="HDK5682613.1"
                     /translation="MDNQQRLNRRENIRNFSIIAHIDHGKSTLADRILENTKSVESRE
                     MQAQLLDSMDLERERGITIKLNAVRLKYDAKDGQTYTFHLIDTPGHVDFTYEVSRSLA
                     ACEGAILVVDAAQGIEAQTLANVYLALDNDLELIPVINKIDLPAAEPERVKQEVEDVI
                     GLDKDDAVLASAKANIGIEEILEKIVEMIPPPDGDPAAPLKALIFDSEYDPYRGVISS
                     IRVVDGVVKAGDRIQMMATGKTFEVTEVGINTPKELPVEELTVGDVGYIIASIKNVDD
                     SRVGDTITHANRPAETPLKGYKKMNPMVYCGLFPIDNKDYNDLREALEKLQLNDASLE
                     FEPESSKALGFGYRTGFLGMLHMEIIQERIEREFGIELIATAPSVIYTVILRNGDEIH
                     VDNPAQMPDRDQIDKVFEPYVRATMMVPNDYVGAVMELCQRKRGQFVNMDYLDDIRVS
                     IVYELPLSEVVFDFFDQLKSNTKGYASFDYEFIENKESNLVKMDILLNGDKVDALSFI
                     VHRDFAYERGKTLVEKLKTLIPRQQFEVPVQAAVGHKIVARTNIKSMGKNVLSKCYGG
                     DISRKRKLLEKQKAGKAKMKAVGSVEIPQDAFLAVLKMDDE"
     gene            7233..8354
                     /locus_tag="PTC08_001100"
     CDS             7233..8354
                     /locus_tag="PTC08_001100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-independent coproporphyrinogen III
                     oxidase"
                     /protein_id="HDK5682614.1"
                     /translation="MVAKSVYIHIPFCVKICTYCDFNKYFIQNQPVDLYLACLVEEMK
                     QSKASQLETLFVGGGTPTALSESQLEYLLQAIQDQFDIKGEYTFEANPDELTEEKVAL
                     LKRYGVNRLSLGVQTFDDTLLQTLGRSHHKADIYQAIDNARRQGISSISLDLMYHLPG
                     QSMQQFQESLEEALRLDIDHLSSYGLILEPQTQFYNQYRKGKLKMPNEDVGAEMYQYL
                     MNRMKNSPLQQYEISNFAKKGHESIHNQVYWKNESYYGFGAGASGYIGGVRYTNVNPV
                     NHYIKKIQQHEFPRLTETTPTVKEQIEEEMFLGLRMNTGVDKIKFQKKYHQTIEAIYA
                     KEIISLEGQNLIDQTDTHIALTDKGRIVGNTVFEAFIQV"
     gene            8457..9446
                     /gene="hrcA"
                     /locus_tag="PTC08_001101"
     CDS             8457..9446
                     /gene="hrcA"
                     /locus_tag="PTC08_001101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heat-inducible transcription repressor HrcA"
                     /protein_id="HDK5682615.1"
                     /translation="MITPRQLKILTAIVEDYVDLGQPIGSNTLIQRHNVDVSPATIRN
                     DMKTLEENSLITKTHFSSGRIPSEAGFRLYANHLLEQPYNFEMQGSLDIHQMLVNHHY
                     DLSSTLDTFAKVFSNQAHYTTLVIGPDHSKASILDVHLMKLNPHHLIVVMIDETGQVK
                     HLHVTSDQPYADHSIIKVSNYLSANVRQFFDGNDVQSIEVYRMLGFNAEEADLIVRIL
                     HMLHQYRNNQSTRVYLGGKHQLIEGLNESTVASIQPILKYIESDRIADVIHHMSDQLI
                     NVRIGTDIEQNLHGIAILSRSYQIDKDLTGHIAVIGPTAMHYHNVIQLLSRIS"
     gene            9461..10102
                     /gene="grpE"
                     /locus_tag="PTC08_001102"
     CDS             9461..10102
                     /gene="grpE"
                     /locus_tag="PTC08_001102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HDK5682616.1"
                     /translation="MFKRNGGLKMSEEKDVRKDEEIKETESQETTETSELEVENEQVA
                     VNQDSENENDASNDETQDLKDEEIASLKAEVDAKEEQYLRLYAEFENYKRRIQNEAQT
                     QKRYQAQKVLTDVLPALDNFERALKIEGDDESFNALKKGVEMVYESLLKALEDNGLEK
                     IKTEGEQFDPNFHQAVMQDENPDFESGQITEELQAGYQLKDRVLRASMVKVNQ"
     gene            10166..11998
                     /gene="dnaK"
                     /locus_tag="PTC08_001103"
     CDS             10166..11998
                     /gene="dnaK"
                     /locus_tag="PTC08_001103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HDK5682617.1"
                     /translation="MSKVIGIDLGTTNSCVSVLEGDEPKVIQNPEGARTTPSVVAFKN
                     GETQVGEVAKRQAITNPNTIQSIKRYMGTDHKENIDGKSYTPQEISAMILQNLKSTAE
                     SYLGEKVEKAVITVPAYFNDAERQATKDAGKIAGLEVERIINEPTAAALAYGLDKTDK
                     DEKVLVFDLGGGTFDVSILELGDGVFEVLATAGDNKLGGDDFDQVIIDYLVQQFKSEN
                     GVDLSQDKMALQRLKDAAEKAKKDLSGVSSTQISLPFISAGEAGPLHLETTLSRAKFE
                     ELAYDLVQKTMGPTRQAMKDAGLSNADIDEVILVGGSTRIPAVQEAIKKEIGKEPNKG
                     VNPDEVVAMGAAIQGGVITGDVKDVVLLDVTPLSLGIEIMGGRMNTLIERNTTIPTSK
                     SQVYSTAADNQPAVDIHVLQGERPMASDNKTLGRFQLTDIPPAPRGVPQIEVTFDIDK
                     NGIVNVTAKDLGTNKEQNITIESSSALSDEEIDRMVKDAEQNAEADKKRREEVDLRND
                     ADQLVFQVDKTLKDLGDNVSEEDKKEAEAKKDELKTALEGSDIEDIKAKKEALEQVVQ
                     QLSMKVYEQAQQAAQQGGENTSQNDSTVEDAEFKEVNDDDNQQK"
     gene            12108..13241
                     /gene="dnaJ"
                     /locus_tag="PTC08_001104"
     CDS             12108..13241
                     /gene="dnaJ"
                     /locus_tag="PTC08_001104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HDK5682618.1"
                     /translation="MAKRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGSDE
                     KFKEISEAYEVLSDENKRAQYDQFGHSGPQGGFGQGFGGQDFSGFGGGGFEDIFSQFF
                     GGAQRQRDPNAPRRGDDLQYTMTVTFDEAVFGTKKEISIRKEVTCHTCGGEGAKPGTK
                     KKTCSYCHGAGHVSVEQNTILGRVRTEKVCPECNGTGEEFEEPCPTCHGKGTELKNVK
                     LEVTVPEGVDNDQQIRLAGQGGPGENGGPAGDLFVIFRVQPSDKFTREGDDILYNHNI
                     SFAQAALGDEVKIPTLKGHVMLTVPEGTQTGKQFRLKGKGIKNVHGYGYGDLFVNIRV
                     QTPTGLNERQRELLKEFAEMSGETVNEQPSNFKDKARRFFKGE"
     gene            13245..14177
                     /gene="prmA"
                     /locus_tag="PTC08_001105"
     CDS             13245..14177
                     /gene="prmA"
                     /locus_tag="PTC08_001105"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001831256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HDK5682619.1"
                     /translation="MNWIELSVTVNQAAESIATEILQEAGSNGVAIEDSSEISKIRED
                     RFGEIFELNPADYPEQHMIVKAYFNDLQYDETLKNNIFSKLQASPLIDPDVLMIEQKF
                     VQESDWENEWKNYFHPFQASERFFIVPSWESVERDDTQLYIELDPGMAFGTGDHPTTS
                     MCLKALEQIVKPEHRVIDVGTGSGILSVASYLLGAQSIKATDLDEMAVQVAKENFENN
                     HCLDAIETATGNLLTEEKGQYDVVIANILAHIIEKMVQDAYDHLNPEGYFITSGIIEE
                     KRESVQTLMEETGFTIKEVKNDEGWICIIGQKVN"
     gene            14179..14931
                     /locus_tag="PTC08_001106"
     CDS             14179..14931
                     /locus_tag="PTC08_001106"
                     /EC_number="2.1.1.193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (uracil(1498)-N(3))-methyltransferase"
                     /protein_id="HDK5682620.1"
                     /translation="MQRYFLNENAEQHQRFFITNNNDIHHIKSVMRQNVGDALIINFL
                     NAVTYRCKIIDIEAQRITIETVERIEVETELPLNITICSGLIKGDKYEWLLQKATELG
                     ATSFIITQMDRSVVKLNQQKAAKKVERWQKIVKEAAEQSYRQAVPQVKFVSNLHEIYD
                     MIGQYDCVLMAYEAAAKQNERALFKQQLRQFKHGSHVLLLFGPEGGFSENEIALFEDV
                     AQSVGLGPRILRAETAPLYALSAISYEIELMG"
     gene            14936..16285
                     /gene="mtaB"
                     /locus_tag="PTC08_001107"
     CDS             14936..16285
                     /gene="mtaB"
                     /locus_tag="PTC08_001107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-
                     methylthiotransferase MtaB"
                     /protein_id="HDK5682621.1"
                     /translation="MSTVAFHTLGCKVNHYETEAIWQLFKDAEYNRVDFEQNADVFVI
                     NTCTVTNTGDKKSRQIIRRAIRQNPDAVICVTGCYAQTSSAEIMEIPGVDIVVGTQDR
                     HKLLDYIDTYQDERQPINGVSNIMKNRTYEELDVPYFTDRTRASLKIQEGCNNFCTFC
                     IIPWARGLMRSRDPKKVIEQATQLVNSGYKEIVLTGIHTGGYGQDLKDYNLAQLLRDL
                     ETVDGLERIRISSIEASQLTDEVIEVLQQSQKVVRHLHIPLQSGSDSVLKRMRRKYSM
                     AHFSERIQKLHAALPGLAVTSDVIVGFPGETEAEFQETYDFIVNHHFSELHVFPYSPR
                     IGTPAARMDDQIDEEIKNERVHKLIELSNQLAKTYASKFENDVLEVIPEEKGSQDGLL
                     VGYADNYMKVEFVGDESLIGQICKVKVTQAGYPINQGTLLRVVEHATNASENEKVLN"
BASE COUNT         5627 a         2744 c         3210 g         4762 t
ORIGIN      
        1 taataaagct ttacaagccc cagaaagtga ccgcttattc tttattgtaa aaaaataaca
       61 agtaaaaaac ctccatcatg cgtgtaatac gtatgatagg aggttttatt tatgttttct
      121 gtaaatcaaa tcatcgcgtt agtcaaacag tacaaattgc aaacagctgt tgttattgca
      181 atcttcatcg cgattggagg atggcttgtc tttaattctg gtgaggaaga ccctgcaaaa
      241 gataatttag caatgcaaca aacgcaaccg attgaggtgc atcaagcaaa atcgaaaagt
      301 aaagataaaa aagagcaaaa ttcacagacg cctcaaaaaa ttattgtcga tattaaaggc
      361 gcagtaaaaa aaccgaatac gtatgaaatg caatcagatg atcgaatgaa acagctatta
      421 gataaggcag aaccgttgaa tactgctgat ttgagtcgtg ttaatttagc ggaaaagtta
      481 acagatcaaa aaatgattta tattccggat caacgtgaag tgacaacctc taactctagt
      541 catgcatcac aacaagatga tacgtcagct gcgtctactt cacaaaacat ctctgttaat
      601 ttaaatactg ccgacgagaa ggaactgacc caaattcctg gcatagggcc ttcaaaagcg
      661 caaacgatta ttaaacatcg tgaagaaaat ggacctttcc aaagtgttga agatttaaaa
      721 aatgtcaaag gaattgggga aaaaacattt gaaaaactaa agaactattt aacagtttaa
      781 tcctaaatag ggtgtaacta gtcgaagcaa gtcgaatcct ttataataag aataaaatca
      841 acaatgatac gaggtgacaa aaagtatgaa acgtattcaa tggcatgaat attttatggc
      901 acagtctcat ttattagcat tgagatctac ttgtacacgc ctctctgtag gtgcaacaat
      961 tactaaagat aatcggatca tcgcgggagg ttataacggt tcagtttcag gtgaagtcca
     1021 ttgtatagat gaaggctgtt taatggaagg tggacactgt attagaacga tacatgctga
     1081 aatgaacgct atcttgcaat gttcgaaaca aggtgtctct actgaaaatg caacaattta
     1141 tgtcacgcat ttcccttgtt tgaactgtac aaaatcgatt attcaagctg ggattaaaac
     1201 gatttattat gcggaagatt accataatca tgattacgca gtgaagctat tagaacaatc
     1261 tggtgtgcac tatgaaaaaa tcagttttaa tcgtcaacac attgcggaat atttattgga
     1321 ataataatga cttattggtt aattacatat attatcggca atattgctta tcatcatttg
     1381 ttaactgcat gcttcatata tagcgtgtta gcatgcagtt tatacttaaa gaaaatgtca
     1441 tggttattca tcatttcaac cttgattgtt gtgctcattg gttataccat cgagacgata
     1501 caacataaaa atgagccttc aatcctaaca gcaaccccga cgtcatccca caaaacgatt
     1561 agcgtccatt tgacgacgtt acctattgtg acagaccaac ttttaactgt tcaagcaaca
     1621 ttcaataaac aagaaatact gattaaaggg cgtatcaaac cacaacaatt tatcccagat
     1681 gcgcattttc tcctcaatca ccaatgtcaa ttaacaggtt cttttcaacc accactttat
     1741 cgccaacaac gaccgctctt tgccgttaaa aaaataacat ttgaccaatg tcatatgaca
     1801 accccgacgt taaaacaacg cataacgtat gtaagaagtg ttgtaactga aagactgtta
     1861 aattcacaac ttttcggaag aggcgaactg atcgcgattg caacgggaaa cgcgaattat
     1921 ttagataaag atatgaagtc attagcacaa cagttgggta tttctcattt gtttgctgtg
     1981 agcgggaccc acgtgagtat attcattttc atgttttatg caattgggaa acgtctccct
     2041 ttacctatgt attataccga agtgggatta atactctttt taccggtatt cttaatcttt
     2101 gtaggtacca gtccaagtgc gacacgtgcg gtagctatga cgttgctcct actcatagtt
     2161 tcaaggtact ttcatatgac gtcactgcag tcgcttttac tcgtttattt tgttatgagt
     2221 ctgatgaata gcgactatca ctatcattta ggctttttat actctttttt gatttcaggg
     2281 atattgattt tgatgaaaga tatttttaca gagcgtccta tttatcaatc gctcttttta
     2341 ggttcttata ttgctgttat tgcagccatt cctttaaact atgtgcaact taatgagatt
     2401 caatggcaag ggttaatctc aaacttattc ttcatcccac tttacagtat aatcatcatt
     2461 ccactgtcgt ttatacttgc catcattgcg attgttacac ctgccttttt atctatgttc
     2521 acgcacttca cacacgttat ttttgatatc caagcttttt tattaaaaag actcacagtg
     2581 ctagaaaggt tcacacttcc aataccagac tttggagagt ttggatttct ttgttgtacg
     2641 atagcaacgt ttatactact ttatttgctt tctcaacgtc gatatatcat ttctatcgtt
     2701 ctggtttgtt gtctgtgcat cttactatgg caagttcatc ctcgttttac taaccaaatg
     2761 accatgattg atgtgggtca aggtgatgct atattgttcc aaagccaaac gggtgaaaca
     2821 ctcatgattg atacgggtgg cgcatatgaa catcatcaac gcaaacagtc gaatattaat
     2881 attacaaaga aaaatattta tccattgttt aagaaattag ggattcacca aatcgactat
     2941 cttgtcatta cacatgcaca tcaagatcat atgggagaaa tcgaacattt atcacaatat
     3001 gtgaacatca aaaatgtggt tattaatcca tcacattttg atgatgagaa gtttcaaaag
     3061 gttcaacatg tgattgcaag tgaacatgca caattgtatt catatgagga cctctctcgt
     3121 attgtcttag gtgattttca atttcaattt ttcaacactg acattcctga aagtgaggac
     3181 cccaatgagc attctattgt gacattagct acaattcacg atattcatgt tttattgatg
     3241 ggcgatgcta cgacaaaaaa tgaggatgtc ttgttaaaga aatattcgtt accacgaatt
     3301 caaatattaa aagtaggtca tcatggcagt cggacaagtt cctctaagac ctttctgagt
     3361 caaattcatc cagacatcgc actcatttct gctggtaaac aaaatatgta tcatttgcca
     3421 catcctttaa cgctacaaaa attacatgac attcatgcga aaatttataa caccgcagat
     3481 aatcatcata ttcatgtccg atttgatgcg ttcaatgaag caggttatac gttgcgcaca
     3541 gaaccgttga actgataatg aagtcggctt aacattcatg ttataataca gctaaagcaa
     3601 tgagatagag aggaatcaca tcatgtcaaa tattcatgtc attcacggtg aagtcccaga
     3661 attaatagat cgtgaaacag aacaacttac tcaaaagtat ttgggcaatg aacctaaaga
     3721 tgactttaat tatgttaaat acaacttgta tgaaacgact ttaaatacaa tcattgaaga
     3781 agcaatgaca cttccatttt tttcggataa aaagattatt gttgtacaaa atagctatat
     3841 atttaccggt gaaaaaccac ctaaagaggc acagacaaac gctgacagct tattagagtt
     3901 tattgaaaag tatgatgagg cttctttaat tatttttcaa gttcaagcgg tgaagttaga
     3961 cgaaagaaaa aaagttgtta aagcattgaa aaaagtggcg aacatcaaga aaattgaaca
     4021 aatgactgaa caagaaatgc aaaaatggat tcatcaatat ttgaatcagt cctataaaga
     4081 aattaaacaa gatgcattag aagcgttgat tcagttgaca ggcattcatt atcgtatgat
     4141 taagcaagaa ttagataagt tgttgttgtt tgtcggtgat cgcccaacga ttaataaaga
     4201 agatgtccag acgatagtga atagaagttt ggagcaaaac gtttttttat tgacggatta
     4261 tattcaaaaa ggacaaaagg cacaagctat ttcgctcgtt aaagatttaa tccaattaaa
     4321 agaagagccg attaaactgt tggcgttaat tacaagtaac tatcgcttat attaccaaag
     4381 taaaattctc aatcaaaaag gatactctgg tcagcagatt gccaaaacgg taggtgtcca
     4441 tccttatcgc gtaaaactcg cattgaatca agcacgaaaa tatgatttag acacgttgtt
     4501 gaccattatg gatgtttgta cagaaacaga ctatcaattg aaatcgtctt atatggataa
     4561 ggtattgatt ttagaattgt ttattatgaa attgtaaagg atgaatataa caaaaggctt
     4621 taggaaggcg atatgataga tagacacgtg tatcacttca gcatatgagt gtgatatatg
     4681 cacacgtgtc gttctcactc tataaaaatg aaagttggga gagcggacaa tgaaaaagag
     4741 ctatacctca aatggcacag ctctttttca ttattttgct gacattaatt ttgatttcat
     4801 tctatcagct ttgttagaat gaattaaatt cttttgggca gctttatcaa tacgtttcac
     4861 tgctttgctt actaattctt gtttattatc agcattagtt tcaattgctt ttttcgcgct
     4921 tttcactgca gaacgcatgt catttttttg tgaaatgttt ttgctttctg ctgtatgagt
     4981 tgttctcaca cgtttaattg cagatttgat atttggcatg aaagacacct cctataatcg
     5041 tcttcgtatc aaaataattt gattacaaca agattcattc tatcaaaact ctattcattg
     5101 tgcaataatt aattgaaccg ttgaattatt tttttcgacg acatgtactg acgtgacaat
     5161 atcatttctt taatgcaagt gtgaccatga cgaaaatgat ttctatttga agtattgaat
     5221 taatgcattt cacttatcat tttgcgtcat gatagagttg caattaatgc ttaaaaacgt
     5281 tattatagca aagatgtaat cgttaattta cgggtaaact tatgaaagtg agtatgatga
     5341 tatggataac caacaacgtt taaatagacg tgaaaatatc aggaattttt cgatcatagc
     5401 gcatatcgac cacgggaaat caactttagc cgatcgaatt ttagaaaata caaagtctgt
     5461 tgaatctcga gaaatgcaag cacaactgtt agattcaatg gatttagagc gtgaacgtgg
     5521 tatcaccatt aaattaaatg ctgtacgttt aaaatatgat gctaaagatg gacaaaccta
     5581 cacgttccat ttaatcgata caccaggaca cgtcgacttt acatacgaag tgtcacgttc
     5641 gttagctgct tgtgaaggcg cgattctagt tgtagacgct gcacaaggta tcgaagcaca
     5701 aactttagcg aatgtatatt tagcactcga caatgattta gaactgattc ccgtcattaa
     5761 taaaatcgat ttaccagctg ctgaaccaga acgtgtgaaa caagaggttg aagatgttat
     5821 tggtttagac aaagatgatg ccgtactagc gagtgcgaaa gctaacattg gtattgaaga
     5881 aattttagaa aagattgttg aaatgattcc acctccagac ggggacccag ctgcaccatt
     5941 gaaagcattg atttttgact ctgaatatga cccatatcgc ggtgtcattt cttcgattcg
     6001 tgttgttgac ggtgtagtta aagcgggtga ccgtattcaa atgatggcga ctggtaaaac
     6061 ttttgaagtg actgaagtcg gcattaatac accgaaagaa ttaccggttg aagagttaac
     6121 tgttggtgat gtaggttata tcatcgcaag cattaaaaat gtagatgact cacgtgttgg
     6181 ggacactatt acccacgcta atagacctgc tgagacccct ttaaaagggt ataagaaaat
     6241 gaatccaatg gtgtattgtg gtcttttccc aattgacaat aaagactaca atgatttacg
     6301 tgaagcatta gaaaaattgc agttaaacga tgcgtcatta gaattcgaac cagaatcttc
     6361 aaaagcactt ggatttggtt atcgtacagg cttcctcggt atgttgcata tggaaatcat
     6421 tcaagaacgt atcgaacgtg aatttggaat tgaacttatc gcaacagcac catccgttat
     6481 ttacacagtt attttgagaa atggtgatga gattcatgta gataacccag cacaaatgcc
     6541 tgacagagat caaatcgata aagtgtttga accttatgta cgtgcaacga tgatggtgcc
     6601 aaatgattat gttggagcgg ttatggaact gtgtcaacgt aaacgtggtc agtttgtcaa
     6661 tatggattac ttggatgata ttcgtgtaag tatcgtttat gaattaccat tgtcagaagt
     6721 cgtttttgat ttctttgacc aattgaagtc caacacgaaa ggttacgctt catttgatta
     6781 tgaatttatc gagaataaag aaagtaacct tgtgaaaatg gacattttac ttaacggcga
     6841 taaggtagat gctttgagtt ttattgtaca tcgtgatttt gcatatgaac gtggtaaaac
     6901 acttgtagaa aaattaaaaa cgttaatccc tagacaacaa ttcgaagtgc ctgttcaagc
     6961 tgcagtagga cataaaattg tcgctagaac aaacattaaa tcaatgggta aaaacgtact
     7021 ttcgaaatgt tatggtggtg acattagccg taaacgtaaa ttattagaaa agcaaaaagc
     7081 cggtaaagcc aaaatgaaag ctgtcggtag tgtggaaatt ccacaagatg ctttcttggc
     7141 tgtactgaaa atggacgatg aataaagtga aaatttcatg ctcccgcgca tcttgaggtg
     7201 tcgagggggc atattttatg aggtgaatac taatggtggc aaaaagtgtt tatattcata
     7261 ttcctttttg tgtaaaaatc tgtacgtatt gtgatttcaa taaatatttc atccaaaatc
     7321 agcctgtcga tctatatttg gcgtgcttgg tcgaggagat gaaacaatcc aaagcatctc
     7381 aattagagac gttatttgtc ggtggtggca cgcctaccgc attatctgaa tcccaattag
     7441 aatatttatt acaagcaatt caagaccagt ttgatattaa aggggaatac acctttgaag
     7501 cgaatccgga cgaactgaca gaagaaaaag tggcgctatt gaaacgatac ggtgtgaatc
     7561 gactctcact tggcgtacaa acttttgacg atactttact tcaaacatta ggtcgcagtc
     7621 atcataaagc tgatatttat caagcgatag acaatgcacg tcgacaaggt atttcatcca
     7681 ttagtttaga tttaatgtat catttgcctg gtcagagtat gcaacaattt caagagagtt
     7741 tagaagaagc actccgcctt gatatcgacc atttatccag ttatggctta attctagaac
     7801 cccagacaca gttttataat cagtatcgta aagggaaact aaaaatgcct aacgaagatg
     7861 tcggtgcaga aatgtatcaa tatttaatga atcgtatgaa aaatagccca ttgcagcaat
     7921 acgaaatttc taactttgct aaaaaagggc atgaatctat ccacaatcaa gtctattgga
     7981 aaaatgaaag ctattatggc tttggtgcag gtgcgagtgg ttatattggt ggggtacgtt
     8041 atacaaatgt taatccggtc aatcactaca ttaaaaaaat ccaacaacat gaatttccgc
     8101 gtttaactga aacgactccg actgttaaag aacaaattga agaagaaatg tttctaggat
     8161 taagaatgaa taccggtgtt gataaaataa agttccaaaa gaaatatcat caaacaattg
     8221 aagctatcta tgcaaaagaa atcatctctt tggaaggtca aaatctcatt gaccaaaccg
     8281 atacacacat cgctttaacg gataaaggaa gaattgtcgg aaacacggtg tttgaggcat
     8341 ttattcaagt ataaaaagtt ttttgagaaa tgatgcttta acattgactt actttgacca
     8401 atttgataaa ttataattag cacttacaga gaaagagtgc taatgaggtg aaaaacatga
     8461 ttacgccaag gcaattgaag attttaactg caattgttga agattatgtt gacttaggac
     8521 aacctattgg atctaacaca ttaatacaaa ggcacaatgt ggatgtcagt cctgcgacga
     8581 ttcgtaatga catgaagaca ctagaagaaa attcactcat cactaaaaca catttttctt
     8641 ctggtcgaat cccttcagaa gcaggattta gactctatgc caatcatttg ttagaacaac
     8701 cctataattt tgaaatgcaa ggtagtcttg atattcatca gatgttagtg aatcatcatt
     8761 atgatttatc atcgacacta gacacctttg caaaagtgtt ttcaaatcaa gcacattata
     8821 ccactcttgt tataggacct gatcactcaa aggcctctat actggatgtg catttgatga
     8881 agttaaatcc acaccattta atcgtagtga tgattgatga gacgggacaa gtgaaacatc
     8941 tgcatgtgac aagcgatcaa ccttatgctg atcattcgat cattaaagta tccaactatc
     9001 tatctgcgaa cgtgcgtcaa ttttttgatg gtaatgatgt gcaatccata gaagtgtatc
     9061 gcatgctggg atttaatgca gaagaggcag atttaatcgt tcgtatttta cacatgttgc
     9121 atcagtaccg taacaatcaa tctacgcgtg tttatttagg tggtaaacat caactcattg
     9181 aaggattaaa cgagtcgact gtggcgtcca tacaacctat attaaaatat attgagtccg
     9241 atcgtattgc tgatgtgatt catcatatgt ctgaccaatt gattaatgta cgtattggga
     9301 ccgatattga acaaaattta cacggcattg cgatattaag ccgatcatat caaatagata
     9361 aagatttaac aggtcatatt gctgttattg gtcctactgc tatgcattat cataatgtga
     9421 tacaattgtt gagtcggatt tcataacgag gtgatacgaa atgtttaaac gtaatggagg
     9481 tttgaaaatg tcagaggaaa aagacgtgcg taaggacgaa gaaatcaaag aaactgagtc
     9541 acaagaaaca acagaaactt cagaactaga agtggaaaat gaacaagttg cagtaaatca
     9601 agactctgag aacgaaaatg atgcaagcaa tgatgaaacg caagatctta aagatgagga
     9661 aattgcttct ttaaaagctg aagttgatgc gaaagaagaa caatatttgc gtttatatgc
     9721 agaatttgaa aattataaaa gacgtattca aaacgaagcg caaacacaaa agagatatca
     9781 ggcacaaaaa gtacttactg atgtattgcc agcacttgat aattttgaac gtgctctaaa
     9841 aattgaaggt gatgatgaat catttaacgc actgaaaaaa ggtgtggaaa tggtttacga
     9901 gagcctatta aaagcactag aagataatgg attagaaaaa atcaaaactg aaggtgaaca
     9961 gtttgatccg aacttccatc aagcagtcat gcaagatgaa aatccggatt ttgaatctgg
    10021 acaaattacc gaagaattac aagctggcta tcagttgaaa gatagagtgt tacgtgcttc
    10081 aatggtaaaa gtaaatcaat aattttgacg aagaaaacca tttatgtgaa aataattgtg
    10141 tttgaaaatt aggaggaatt tgactatgag taaagtaatt ggaattgact taggtacaac
    10201 aaactcttgt gtatcagtat tagaaggtga cgaacctaaa gttattcaaa accctgaagg
    10261 cgctagaact acaccatctg ttgttgcatt taaaaatggt gaaacacaag ttggggaagt
    10321 tgctaaacgt caggcaatca caaaccctaa tacaatccaa tctattaaac gttacatggg
    10381 tacagaccat aaagaaaata ttgacggtaa atcttataca cctcaagaaa tttctgcaat
    10441 gattttacaa aacttaaaaa gcactgcaga aagctactta ggtgaaaaag ttgaaaaagc
    10501 ggttattaca gttcctgctt acttcaatga tgcagaacgt caagcgacta aagatgcggg
    10561 taaaatcgct ggtcttgaag ttgaacgtat catcaacgaa ccaacagctg cagcattagc
    10621 ttacggttta gacaaaactg acaaagatga aaaagtactt gtattcgacc ttggtggtgg
    10681 tactttcgac gtatctatcc ttgaattagg tgacggtgta ttcgaagtat tagcaacagc
    10741 tggtgacaat aaacttggtg gggacgattt tgaccaagtg attattgatt acttagtaca
    10801 acaattcaaa tctgaaaatg gtgtcgactt atcacaagat aaaatggcat tacaacgttt
    10861 aaaagatgct gctgagaaag cgaaaaaaga cttatcaggt gtatcttcaa cacaaatttc
    10921 attaccattt atctcagctg gtgaagcggg tccattgcat ttagaaacaa ctttaagccg
    10981 tgcgaaattt gaagaattgg catatgatct tgtacaaaaa acgatgggac ctacacgtca
    11041 agcaatgaaa gatgccggtc tttcaaacgc tgacattgat gaagtcatct tagttggtgg
    11101 ttcaacacgt attcctgcag tacaagaagc aattaaaaaa gaaattggta aagaaccaaa
    11161 caaaggtgtt aaccctgatg aagttgttgc gatgggtgca gcaatccaag gtggggttat
    11221 cactggtgat gttaaagatg ttgtattatt agacgtaaca ccactatcat taggtatcga
    11281 aattatgggt ggtcgtatga atacgttaat tgaaagaaac acaacgattc caacatctaa
    11341 atctcaagtt tactctacag cagcagataa ccaaccagct gtagacattc acgttttaca
    11401 aggtgaacgt ccaatggcat cagataacaa aacattaggt cgttttcaat taactgatat
    11461 tccaccagca ccacgtggcg tacctcaaat cgaagtaaca tttgatatcg ataaaaacgg
    11521 tattgtaaat gtaactgcaa aagacttagg tacaaataaa gaacaaaaca ttacaatcga
    11581 atcatcttct gcattatctg atgaagaaat cgatcgtatg gtaaaagatg ctgaacaaaa
    11641 cgctgaagca gataaaaaac gtcgtgaaga agtagattta agaaatgatg cggatcaact
    11701 tgtattccaa gtcgacaaaa cattgaaaga cttaggcgac aatgtgagtg aagaagataa
    11761 aaaagaagct gaagcgaaaa aagacgaact aaaaactgca ttagaaggta gcgacattga
    11821 agacattaaa gcgaaaaaag aagctttaga acaagtcgtg caacaattat caatgaaagt
    11881 ttatgagcaa gcacaacaag ctgcacaaca gggtggcgag aatacttctc aaaacgatag
    11941 tactgttgaa gatgcagaat ttaaagaagt aaacgacgac gacaatcaac aaaaataggt
    12001 cattcgatca tataaattga ctgtaaaagg tcgctcaaag gggctaggac attcaatcgt
    12061 cccagcctct ttttattcaa aaaatcaaat caaaaggaga gagtgcattg gcaaaacgag
    12121 attattacga agtccttggc gtgtcgaaaa gtgcgagtaa agatgaaatc aaaaaagcct
    12181 accgtaaatt atcgaaaaaa taccatccag atattaataa agaagaaggt tcagatgaga
    12241 aatttaaaga aatctctgag gcctatgaag tattaagtga cgaaaataaa cgtgcgcaat
    12301 acgatcagtt tggtcatagt ggccctcaag gtggctttgg acagggattt ggtggtcaag
    12361 acttctctgg attcggtggt ggcggctttg aagatatctt tagccagttc tttggtggtg
    12421 cacaacgtca acgtgatccg aatgcgccac gtcgcggaga cgatcttcaa tacacaatga
    12481 ctgtcacttt tgatgaagct gtattcggta caaagaaaga aatttcaatt cgaaaagaag
    12541 tgacatgtca tacatgtggt ggcgaaggtg ctaaaccagg tactaaaaag aaaacatgtt
    12601 catactgtca tggggcaggt cacgtttctg tcgaacaaaa tactatttta ggacgtgtga
    12661 gaactgaaaa agtttgtcct gaatgtaatg gtactggcga agaatttgaa gaaccatgtc
    12721 caacatgtca cggtaaaggt acagaattaa aaaatgttaa acttgaagtg acggtgcctg
    12781 aaggtgtcga taatgatcaa caaattcgtt tagcaggaca aggtggacca ggtgaaaatg
    12841 gcggaccagc tggtgatctt tttgtgattt tccgtgtgca gccatctgat aaattcacac
    12901 gtgaaggcga tgacatttta tacaatcaca atattagctt tgcacaagcc gcgttaggtg
    12961 acgaagttaa aattccaaca ttaaaagggc atgttatgct aacagtgcct gagggaacgc
    13021 aaacaggtaa acaatttaga cttaaaggta aagggattaa aaatgtccac ggttatggct
    13081 atggtgattt atttgttaac atccgtgttc aaacaccaac tggccttaac gagcgccaac
    13141 gtgaattgtt aaaagaattt gccgaaatgt ctggagaaac agtgaacgaa caaccttcaa
    13201 attttaaaga taaagcacgt cgttttttta aaggagaata acccatgaat tggatcgaac
    13261 tttcagtaac tgttaaccaa gcggcagaat ctatcgccac tgaaatttta caagaagcag
    13321 gttctaacgg tgttgcgatt gaagactcaa gtgagatttc taaaattcga gaagatcgtt
    13381 ttggagaaat ttttgaactt aatccagctg actatccaga gcaacatatg attgttaaag
    13441 cttattttaa tgatttacaa tatgacgaaa cattgaaaaa taacatattt tcaaaacttc
    13501 aagcttcacc cttaatagac ccagatgtgt tgatgataga acaaaagttc gtccaagagt
    13561 ctgattggga aaacgaatgg aaaaattact ttcatccatt tcaagcatct gaacgctttt
    13621 tcatcgtacc tagttgggaa tctgtcgagc gtgatgatac gcagctttat attgaattgg
    13681 atccaggaat ggcctttggt actggagatc atccaacgac aagtatgtgt ctcaaagcgc
    13741 ttgagcagat tgtcaaacca gagcaccgtg tcattgatgt cggcacgggt tcaggtattt
    13801 taagtgtcgc ttcatattta ttaggggcgc aatcaattaa agcgacagac ttagatgaaa
    13861 tggctgtcca agttgcaaaa gaaaactttg aaaataatca ttgtttagac gcgattgaaa
    13921 cggcaacagg taatttactg acagaagaaa agggccaata tgatgtcgtt attgctaaca
    13981 ttttagcgca catcattgaa aaaatggttc aagatgcata tgatcattta aatcctgaag
    14041 gctattttat cacttctggt attattgaag agaaacgtga gtctgttcaa acgttaatgg
    14101 aagaaacagg gttcacaatt aaagaagtta aaaacgatga aggttggatt tgtatcatcg
    14161 gtcagaaggt gaattaacat gcaaagatac tttttaaatg aaaacgctga gcagcatcag
    14221 cgttttttta tcactaacaa taatgatata catcatatta aaagtgtgat gagacaaaac
    14281 gttggcgacg cactcattat taacttttta aatgccgtca cgtatcgctg caaaattatt
    14341 gatattgaag cgcaacgtat tacgattgaa actgtggaac gtattgaagt agaaacggag
    14401 ctccctttga atattacaat ttgtagcggt ttaattaaag gcgataaata cgaatggtta
    14461 ctacaaaaag cgactgaact tggagcgaca tcgttcatca ttacccaaat ggatcgttct
    14521 gtcgtgaaac tgaatcaaca aaaagctgcc aaaaaggttg aacgttggca aaaaatagtg
    14581 aaagaagcgg cagaacaaag ttatcgtcaa gccgtgcctc aagtgaaatt tgtctcgaat
    14641 ttacacgaaa tatatgatat gataggtcaa tatgattgtg tgcttatggc atatgaagcg
    14701 gctgctaaac aaaatgaacg cgctctgttt aagcaacaat tacgtcaatt caaacacggg
    14761 tcccatgtat tattattatt cggcccagaa ggtggttttt ctgaaaatga aatcgcactt
    14821 tttgaagatg ttgcacaaag cgtagggcta ggacctcgta ttttacgtgc tgaaacagcg
    14881 ccactttatg cattaagtgc cataagctac gaaatagaat taatggggtg aatctatgtc
    14941 tacagttgcc tttcatacat tagggtgtaa agtaaaccat tatgaaactg aagcaatttg
    15001 gcagttattt aaagatgcag aatataaccg tgtggatttt gaacaaaatg cggacgtatt
    15061 cgtgattaat acatgtacag taacaaatac aggtgataaa aagagtcgcc aaattattcg
    15121 acgtgcgatt cgacaaaatc ctgatgcggt tatatgtgtg acaggatgtt atgcacaaac
    15181 gtcatcagct gaaattatgg aaattcctgg tgtcgatatt gttgtcggta ctcaagatcg
    15241 tcataaatta ttagattaca tcgatacgta tcaagatgaa cgtcaaccga ttaacggtgt
    15301 aagcaatatt atgaaaaatc gtacatacga agagttagat gtcccatatt ttacagatcg
    15361 aacacgtgca tcgcttaaaa ttcaagaagg ttgtaataac ttttgtacgt tctgtattat
    15421 tccatgggca cgtggtttaa tgcgttcaag agacccaaaa aaggtaattg aacaagcgac
    15481 acaactcgtt aactcagggt ataaagaaat tgtgctcact ggtattcata ctgggggcta
    15541 cggtcaagac ttgaaagact acaacctagc acaattgtta agagatttag aaacagttga
    15601 tggcttagaa cgtattcgta tttcttcaat cgaagcgagc caattaacgg atgaagtgat
    15661 tgaagtattg caacagtcac aaaaagtagt acgtcattta cacattccac ttcaatcggg
    15721 ctcagacagt gtgctcaaac gtatgcgccg taaatattca atggctcatt tttctgaacg
    15781 tattcaaaaa ttacacgctg cgttacctgg tttagccgtt acaagcgatg ttattgttgg
    15841 tttcccaggt gagactgaag cagaatttca agaaacgtat gattttatcg ttaaccatca
    15901 tttttctgaa ttacacgtct ttccatattc accacgaatt ggtacacctg ctgcacgtat
    15961 ggatgatcaa attgatgaag aaattaaaaa tgaacgtgtc cataaattga ttgaattgag
    16021 caatcaactt gctaaaactt atgcttcaaa atttgaaaat gatgtattag aagtaattcc
    16081 ggaagaaaaa ggttctcaag acggcttact cgttggctat gcagataact atatgaaagt
    16141 tgaatttgta ggtgacgaat ctcttattgg acaaatttgc aaagtgaaag tgacacaagc
    16201 cggttatcca atcaatcaag ggacattact acgtgtcgtt gaacatgcga cgaatgcttc
    16261 agaaaatgaa aaggtgttaa attagccgat aatttaacat actactcgag taaattgttt
    16321 gcttttattt acatttttta tta
//
LOCUS       DANHOL010000048        16333 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.048, whole genome shotgun sequence.
ACCESSION   DANHOL010000048 DANHOL010000000
VERSION     DANHOL010000048.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 16333)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16333)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16333
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.048"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            1..1203
                     /locus_tag="PTC08_001108"
     CDS             1..1203
                     /locus_tag="PTC08_001108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate kinase"
                     /protein_id="HDK5682622.1"
                     /translation="MSKLILAINAGSSSLKFQLIEMPEEKLITKGLVERIGLKDSIFT
                     IEVNGEKIKEVQDIKDHEQAVNMMLESLQKHGVINDINEIDGTGHRVVHGGELFPESA
                     LVTDDVIKDIEKLTDLAPLHNPANLMGIQAFRKLLPEIPHVAIFDTSFHQTMPESAYL
                     YSLPYDYYKKYGIRKYGFHGTSHKYVSQRAAEMLGKPIEELRIISCHIGNGASIAAID
                     GGKSIDTSMGFTPLAGVTMGTRSGNIDPALIPFLMEKTGKTADEVLNILNKESGLLGI
                     TGTSSDLRDIEDDAKNGEERAELALEVFASRIHKYMGSYATRMHGVDVIIFTAGVGEN
                     SDAVRARVLEGLEFMGVYWDPRKNEGLRGKEAELNYPHSPVKVLVIPTNEEVMIARDV
                     MTFGELEG"
     gene            complement(1463..1966)
                     /locus_tag="PTC08_001109"
     CDS             complement(1463..1966)
                     /locus_tag="PTC08_001109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HDK5682623.1"
                     /translation="MYMYKNILIAVDGSHEAEWAFNKAVAVAKRNNAKLIIVNVIDSR
                     TYTSFEVYDSHFTEKSKSFAEKLLDGYRQVAQDEGIQNVETRLEFGSPKSVLPKLASD
                     ENSDVDLVMCGTSGLNAVERFIVGSVSEAIVRHSACDVLVVRTEQIPENFEPKVATDE
                     LLKDFSI"
     gene            2114..3235
                     /gene="ald"
                     /locus_tag="PTC08_001110"
     CDS             2114..3235
                     /gene="ald"
                     /locus_tag="PTC08_001110"
                     /EC_number="1.4.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine dehydrogenase"
                     /protein_id="HDK5682624.1"
                     /translation="MRIGIPKEIKNNENRVGLSPSGVHALVEAGHEVLVETAAGEGSY
                     FEDMDYVQAGANIVNSQDDVWNVDMVIKVKEPLKEEYEYFREGLILFTYLHLANEPEL
                     TKALIDKKVVAIAYETVQLGDRSLPLLTPMSEVAGRMSTQIGAQFLQRFNGGMGILLG
                     GIPGVPKGKVTIIGGGQAGTNAARIALGLGADVTILDVNPKRLQELEDLFDGRVHTIM
                     SNPLNIESHVVESDLVIGAVLIPGAKAPKLVTEDMIKKMKSGSVVVDIAIDQGGIFET
                     TDKISTHDDPTYIKHGVVHYAVANMPGAVPRTSTIGLNNATLPYALQIASKGYQRALT
                     ENVPLSHGLNVFNGHVTNKAVAEAFNYDYTPVAQVLTEA"
     gene            complement(3328..3963)
                     /locus_tag="PTC08_001111"
     CDS             complement(3328..3963)
                     /locus_tag="PTC08_001111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020220142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper homeostasis protein CutC"
                     /protein_id="HDK5682625.1"
                     /translation="MIKEAVASSLVEVEAKLKAGANRIELCENMHESGTTPSYGMVKI
                     ASDMCQMHDAELAVMIRPRGGAFVYNWYEFESMQADIQQLKTLPIDYFVFGCLTTEST
                     LHQFQMQTLIHLAAPIRVVCHMAFDHIYPAGQSKALQQLINLGVTRLLTHGGPTQSNL
                     FDNLPQLAKWVRQSKGQIEIMPGGGLNYENLDALLELFPFQEVHGTHIVKT"
     gene            complement(3960..5015)
                     /locus_tag="PTC08_001112"
     CDS             complement(3960..5015)
                     /locus_tag="PTC08_001112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002474995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase P family protein"
                     /protein_id="HDK5682626.1"
                     /translation="MSKIEQLVQTLKEQQADAMWVSNPINIFYLTGYKSEPHERLFAL
                     LVRADGQQILFCPQLEVEEVKTSPFTGDIIGYLDTENPFDKHRETYGTLLIEENHLTV
                     QRYHALKNAFSVHTFEAADPIIRALRNVKTADEIDTLRQAAKLADKCMEIGVAFLKEG
                     VTEREVVNHIENEIKKYGVNEMSFDTMVLFGDHAAAPHGTPGDRQLKNNEYVLFDLGV
                     IYNHYCSDITRTVAFGQPDDKAQAIYDIVLKAEQTAIQHIKPGVTISELDDIARGIIT
                     EAGYGEYFPHRLGHGLGLEAHEYQDISSTNQNSLEAGMVLTIEPGIYVPNVAGVRIED
                     DILVTEDGYESLSGYKK"
     gene            5272..5961
                     /locus_tag="PTC08_001113"
     CDS             5272..5961
                     /locus_tag="PTC08_001113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HDK5682627.1"
                     /translation="MKLSFHGQSTVYFEANGKSGIIDPFITGNGQTDLNVEDLKVDYV
                     ILTHGHEDHFGDTIEIAKRNNATVIGSAEMANYLSTNQGVENVHPMNIGGKWTFDFGV
                     VKFVQAFHSSSLTDDNGIPMYLGMPMGVILELEGKTIYHTGDTGLFSDMKLIADRHPV
                     DVCFVPIGDNFTMGIEDASYAINEFIQPKLTVPIHYNTFPLIEQDPEAFKKLVNVGEV
                     QIVKPGGVVEL"
     gene            complement(6575..6988)
                     /locus_tag="PTC08_001114"
     CDS             complement(6575..6988)
                     /locus_tag="PTC08_001114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HDK5682628.1"
                     /translation="MHQNILLAVDTDLKNAKALQEVVKISGDNSVVTLLNIIGEQDVQ
                     ASVKMGTHYEELKQMRHEQMKPTRDTLEQNGLQYEEIIERGNPKEKIVNYANSGQYDI
                     VVLSNRKAEAAKKFVLGSVSHKVAKRAKIPVLIVK"
     gene            7309..8604
                     /locus_tag="PTC08_001115"
     CDS             7309..8604
                     /locus_tag="PTC08_001115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HDK5682629.1"
                     /translation="MTKHEQIIKHIESLSVGQKISVRKIAKDLDVSEGTAYRAIKDAG
                     QRGLVASIDRVGTVRIEKKARAKVDHLTFGEIAKIVDGHLIGGKGGQFNSLTKFAIGA
                     MELDNVVNYVSKNTLLIVGNRLDVQKAALERGSAVLITGGFDTTDEIKKMADEQNLPI
                     ISSNYDTFMVANIINRAMYNQMIKKEILVVEDIVIPIEQTSFLYDEMTVGDVGKKSRE
                     TSHSRFPIVDRQNKLAGLITSKDIIGKDLDEKLYRVMTKPAISVQLSTTVASCAHLMI
                     WEGIELLPVTGNQKQLVGVISREDVLKAMQIVGRQPQVGETINDQVAKHIEIRNQQII
                     VEITPQLTNQFGTLSKSVSVAIIEETIKSVMRKHKKLEVMIESLNIFYIRTVQIESEV
                     EVDYTILDMGRNFAKLEVTMFSANQPVAKALIMCQLLDH"
     gene            8617..9549
                     /locus_tag="PTC08_001116"
     CDS             8617..9549
                     /locus_tag="PTC08_001116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional oligoribonuclease/PAP phosphatase
                     NrnA"
                     /protein_id="HDK5682630.1"
                     /translation="MKFIPEIQEQIQQYDTIIIHRHVRPDPDALGSQFGLKEYLIAKY
                     PTKNVYAVGTEEPTLGFMGTFDTIDDAQYDDALVIVCDTANAARIDDARYDRGNALIK
                     IDHHPPVDSYAEINDVDVSASSTSEMIFDLIQGSNDLALMNDKIASALYLGIVGDTGR
                     FFFNNTSPKTMTIASQLLQYDIQHNRLLNQLGEKDPRLMPFHGYVLQNFQLFEDGFCQ
                     VKITHDVLEKFDIQPNEASLYVNAIADLKGLKIWIFAVDEGEEIRCRIRSKEITINDV
                     AGDFGGGGHPNASGVSVHTWDEFESLTEALRQKL"
     gene            9574..12765
                     /locus_tag="PTC08_001117"
     CDS             9574..12765
                     /locus_tag="PTC08_001117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HDK5682631.1"
                     /translation="MVAHLNIHTAYDLLNSSITIEGAVQRTIELGYSAIAITDLNVMY
                     GVPQFYDACIQHGIKPLLGMTVYLTDQLNVLEAVVIAKNNEGLQNLFKLSSDIKVNRI
                     KHVSIYEKKDLFNDTVVIFKQMTNQEKHWHEEMPDGVTCFTDHQSAEDCELPKVLMQA
                     AYYEKAEDKNALKVLHAIRDNTKVNLVDSHETPTEHIYDVDALYDSQFAEAWLARTDE
                     IANMCDAKLEYHQALLPEFVTPDGSSANAYLWAELERALADFGLTEARYRKRLKYEYD
                     VITQMGYADYFLIVSDLIRYAKSNGVMVGPGRGSSAGSLVSYLLNITTIDPLQYDLLF
                     ERFLNPERVTMPDIDIDFEDTQREKVIHYVQQKYGDYRVAGIVTFGHLLAKAVARDVG
                     RVMGFDETTLSEASKLIPSKLGVTLDEAYKEERFKAFVHRNHRHERWFEYCKKLEGLP
                     RNTSTHAAGVIVNDQPLYQSIPLTEGETGLLTQWTMTEAERIGLLKIDFLGLRNLTII
                     HQIIKQVARDLKVDIDVEQIPFDDVHVFELLSRGDTTGIFQLESEGVRRVLQKLQPEH
                     FEDIVAVTSLYRPGPMEEIPTYIRRRHDPSQVTYLHPDLAPILKRTYGVIIYQEQIMQ
                     IASQFAGFSYGEADILRRAMSKKNREVLENERQHFIDGAKEKGYAETLSGQIFDLILK
                     FADYGFPRAHAVSYSKIAYIMTYLKVHYPAYFYANILSNVIGNDTKTNMMIQEAKQQH
                     ITIHGPHINKSQWRYVATQEGVYISLGAIKGVGYQTVQTIMNERREQGPYKDFFDFCN
                     RIPGRLRSRRTLEALILTGAMDCFGKNRATLLQSIDKVSDTDVSIDTDLLASVATIKQ
                     EYAETEEMPSQQLSDFEKQYLGFYVTAHPVEKAFKQKQYLGIFQLQAHVTHQPILVTL
                     DAVRVIRTKQGQQMAFVELNDGITTMDGVIFPKTYQQLTGTLETSKFYIIWGKFEKRN
                     DKLQLIINRLTTLEAFEIEKRQQTRKIVIREGMTDTLEQQYLTQKQSNNNIAVYQYQE
                     SNNQFLFKGYLLQPNLYLDALLDSIKPEHIRLL"
     gene            12908..14140
                     /locus_tag="PTC08_001118"
     CDS             12908..14140
                     /locus_tag="PTC08_001118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003229415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent malic enzyme"
                     /protein_id="HDK5682632.1"
                     /translation="MSLRDDALQMHKENHGKLAVSPKVKVTNKEELSLAYSPGVAEPC
                     KDIHERPSRVYDYTMKSNMVAVISDGTAVLGLGNIGAEASIPVMEGKAVLFKSFAGVD
                     AFPLSLATNDTEEIIRTVKLVEPNFGGVNLEDISAPRCFEIEERLKKETRIPVFHDDQ
                     HGTAIVTVAGLVNALRIVDKDLADIKVVLNGAGAAGIAIVKLLYSYGVRHMIMCDSKG
                     AIYEGRPYGMNETKDTVAKWTNKDKIEGKLVDVIEDADVFIGVSVADALSEEMVQSMN
                     DDAIIFAMANPNPEITPDKAKHAGAKVIGTGRSDFPNQINNVLAFPGIFRGALDVRAT
                     HINEEMKRAAVEAIANLITDEERNPDYVIPGPFDYRVAPSVAREVARAAMESGVARIE
                     VDPDDVYEKTLSLTDLKK"
     gene            14185..15045
                     /locus_tag="PTC08_001119"
     CDS             14185..15045
                     /locus_tag="PTC08_001119"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyltransferase
                     subunit beta"
                     /protein_id="HDK5682633.1"
                     /translation="MFKDFFNRNSKKKKYVTVQDSKQNEVPEGIMTKCPNCKKIMYTK
                     ELTENLNVCFNCDHHIQLSAYGRIEAIADNGTFEEFDKGMTSANPLNFPGYEEKVEKD
                     QEKTGLNEAIVTGTAELNGIKFGIGVMDPRFRMGSMGSVVGEKICRIVDHCTEERLPF
                     VLFTASGGARMQEGIISLMQMAKTSVSLEKHSDAGLLFISYMTHPTTGGVSASFASVG
                     DINLAEPKALIGFAGRRVIEQTINEKLPDDFQTAEFLLEHGQLDKVVHRSEMKKTLAT
                     LFDMHREVEK"
     gene            15045..15989
                     /locus_tag="PTC08_001120"
     CDS             15045..15989
                     /locus_tag="PTC08_001120"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyltransferase
                     subunit alpha"
                     /protein_id="HDK5682634.1"
                     /translation="MLDFEKPIQDIQTKIESLKETQAKNDVDLSDEIEILEAALQTEK
                     EKIYTSLKPWDRVQIARLPERPTVLDYIPYIFDDFIELHGDRNFRDDPAIVGGLAYFN
                     GQPVTVIGQQRGKDTKDNIYRNFGMAHPEGYRKALRLMKEAEKFNRPIFTFIDTKGAY
                     PGKAAEERGQSESIARNLVSMAGLTVPVISIVIGEGGSGGALGLGVSNRLLMLENSTY
                     SVISPEGAAGILWKDSSLAKIAAETMKITAYDLLELNIIDEVVKEPLGGAHHDVEMLA
                     KRIKQKFTKHLASFEHMTPTDIKEDRFEKFRNIGSFVE"
BASE COUNT         5167 a         2756 c         3492 g         4918 t
ORIGIN      
        1 atgtcaaaat taattttggc gattaacgct ggtagttcat cattgaaatt tcaattaatc
       61 gaaatgccag aagaaaaatt aatcactaaa gggttagttg agcgtattgg attaaaggat
      121 tcgattttca caattgaagt gaatggtgaa aaaatcaaag aagtacaaga tattaaagat
      181 cacgaacaag cggtaaacat gatgttagaa agtttacaaa aacacggcgt gattaatgac
      241 attaacgaaa tcgatggtac gggtcatcgt gttgtacatg gtggcgaatt attccctgag
      301 tctgctttag tgacagatga tgtgattaaa gacattgaaa aattaacaga cttagcacca
      361 cttcacaacc cagcaaactt aatgggaatt caagcattta gaaaattgct tcctgaaatt
      421 cctcatgtgg ctatatttga tacatcattc caccaaacaa tgcctgaatc agcatattta
      481 tatagcttac cttatgacta ctataaaaaa tatggtattc gtaaatatgg tttccacggt
      541 acaagccata aatatgtatc acaacgtgca gctgaaatgt taggtaaacc tattgaggaa
      601 ttacgtatta tttcatgtca tattggtaac ggtgcttcaa ttgctgcaat cgatggcggt
      661 aaatcaatcg acacgtcaat gggctttaca ccattagcgg gtgtgacaat gggtacacgt
      721 tcaggtaata ttgaccctgc attaattcca ttcttgatgg agaaaacagg taaaacggct
      781 gatgaagtac ttaatatttt aaacaaagaa tcaggtttat taggtatcac tggaacgtct
      841 tcagatttac gtgatatcga agacgatgcg aaaaatggag aagaacgtgc agagttagcg
      901 ttagaagtat ttgcatcacg catccataaa tacatgggtt catatgcaac acgtatgcat
      961 ggcgtcgatg tgatcatctt tactgccggt gtaggtgaaa actcagatgc agtgcgtgcg
     1021 cgtgtattag aaggtttaga atttatgggc gtttattggg atccacgtaa aaatgaagga
     1081 ttacgtggta aagaagctga gctcaactac ccacattcac ctgtaaaagt attagtcatc
     1141 cctacaaatg aagaagtgat gattgcacgc gacgtgatga ctttcggtga gttagaaggt
     1201 taattttgaa atagcgtatg ataataacag tatgagttgt gatattttca cggcttgtac
     1261 tgttttattt tttgtaaaga aaggggaaag gcattaaaaa agagacgagg aaaacgaatt
     1321 tccaagcctc tttattagcc atgaagtaag atgttacatg atatgtttta gcgtctaact
     1381 acttcatgcc ttgatgattg ttgtgaatag gagactaaaa ttgatgtccc atatccattc
     1441 aaatgtttga tatagggttt aattaaatgc tgaaatcttt taatagttcg tctgttgcta
     1501 cttttggttc gaagttttct ggaatttgct cagtacgtac aactaataca tcacatgctg
     1561 aatgacgtac aatggcttca gataccgaac ctacgatgaa acgttctacc gcgttaaggc
     1621 ctgaagtacc acacatcaca aggtcaacat ctgaattttc atcacttgct aattttggaa
     1681 gaactgattt aggtgatcca aattctaagc gcgtttccac attttgaatg ccttcatctt
     1741 gtgccacttg acggtagcca tccaataatt tttctgcaaa tgatttagac ttttcagtga
     1801 agtgtgaatc ataaacttca aaagatgtgt aagttcttga atcgatgaca ttcacgataa
     1861 tcagtttggc attattacgt tttgcaactg caaccgcttt gttaaatgcc cattccgctt
     1921 catgagaacc atcaacagca attaaaatat ttttgtacat atacatggct aaaacccctt
     1981 tcttatttcg cctttattat aacatatcat ttctaaattt aagtgaaatt tatatgaact
     2041 aaaaaatcaa aaattgttat gattgcgctt acatgttgta tgcgttatga ttggttttgg
     2101 aggtgcaagg agtatgagaa ttggaattcc gaaagagatt aaaaataatg aaaatcgtgt
     2161 cggtttatcc ccaagtggtg tacatgcact tgtagaagct ggacatgaag tgttagttga
     2221 aacagcagca ggtgagggct cttatttcga agacatggat tatgttcaag cgggggcaaa
     2281 catcgtcaat agccaagatg atgtttggaa tgtcgacatg gtgattaaag tgaaagaacc
     2341 attaaaagaa gaatatgaat actttagaga gggactcatt ttattcacat atcttcactt
     2401 ggcaaatgaa cctgaattaa caaaagcgct catcgataaa aaagttgtgg ctatcgcata
     2461 tgaaacggta caacttggtg atcgttcgtt acctttactc acaccaatga gcgaagtggc
     2521 tggacgtatg tctacacaaa ttggggcgca atttttacaa cgcttcaatg ggggcatggg
     2581 tattttactt ggaggaattc caggtgtacc aaaaggtaaa gtgactatta tcggtggcgg
     2641 tcaagcagga acaaatgcag cgcgtattgc attaggactt ggtgcagatg taacgatcct
     2701 tgacgtgaat ccgaaacgtt tgcaagaact tgaagacctt tttgatggtc gtgtgcacac
     2761 aattatgtct aatcctttaa acattgaatc gcatgtcgta gaaagtgacc ttgtcattgg
     2821 ggcagtattg attccgggag caaaagcacc gaaattagtt actgaggaca tgataaagaa
     2881 aatgaaatct ggttctgtcg tcgttgatat cgcgattgac caaggtggta tttttgaaac
     2941 gacagataaa atttcaacac atgatgaccc aacttatatt aaacacggtg tcgttcatta
     3001 tgccgttgca aacatgccag gtgcagtgcc acgtacttct acaattggct taaataatgc
     3061 aacgttacca tatgcgttac aaattgcaag taaaggctat caacgtgcat taacagaaaa
     3121 cgtaccactt tcacatgggt taaacgtgtt taatggacac gtgacaaata aagcggttgc
     3181 tgaagcgttc aattatgatt atacgccagt ggcacaagta ttaacggaag cataattaaa
     3241 ttgttctaaa atataaaaaa gtcagggata tgttgcattt ccctgactcg tctttttgaa
     3301 tgaatatgag caagttcaat attgaattta agtttttaca atatgtgtcc catgcacttc
     3361 ttgaaaagga aataattcca atagcgcatc taaattctca taattcaaac caccacctgg
     3421 catgatttca atttgtcctt tagattgacg aacccatttg gcgagttggg gtaagttatc
     3481 aaataggttt gattgagtag ggccaccatg cgtcagtaat cgtgtgacac ctaaattgat
     3541 caattgttgt aatgcttttg attggccggc agggtagata tgatcaaatg ccatatgaca
     3601 cacaacacgt atcggtgcgg caaggtgaat caatgtttgc atttgaaact gatgtaacgt
     3661 gctctcagtc gttaaacaac cgaacacgaa ataatcgatg ggcaacgttt tgagttgttg
     3721 aatgtcagct tgcatcgatt cgaactcgta ccaattgtaa acaaacgccc cacctcgagg
     3781 acgaatcatc acagccagtt ctgcatcatg catttggcac atatcactgg cgattttaac
     3841 catgccataa ctcggtgttg tgccactttc atgcatattt tcacaaagtt caattcgatt
     3901 ggcgcccgct tttaatttag cttcaacttc tactaatgag gatgcaacag cttctttaat
     3961 catttcttat aacctgatag tgattcatag ccatcttctg tgactaaaat atcatcttct
     4021 atacggacgc ccgcaacatt cggtacataa ataccaggct caattgtcag taccataccg
     4081 gcttcaagag aattttgatt cgtacttgaa atatcttggt attcatgtgc ttccagacct
     4141 aagccatgtc ctagacggtg agggaagtat tcgccatatc ccgcttcagt aatgatacct
     4201 cgtgcaatat catcaagttc actaatcgtg acaccaggtt taatatgttg gattgctgtt
     4261 tgctctgctt ttaatacgat gtcgtaaatg gcttgtgctt tatcatcagg ttggccaaaa
     4321 gcgacagtac gtgtaatatc gctgcagtaa tgattgtaaa tgacgcctaa gtcaaacagc
     4381 acatattcgt tatttttaag ctgacggtct ccaggtgtac cgtgtggtgc cgctgcatga
     4441 tcgccaaata agaccattgt gtcaaaactc atttcattga ctccgtattt ttttatttca
     4501 ttttcaatat gatttacaac ttctcgttct gtgacacctt cttttaaaaa tgccacaccg
     4561 atttccatac atttatccgc taattttgca gcttgtctta aagtgtcgat ttcgtctgct
     4621 gttttaacgt tacgtaacgc gcgaatgata gggtcagcag cttcaaaagt atgcacagaa
     4681 aaggcatttt taagggcgtg atagcgttgt accgttaaat gattttcttc aatcaataat
     4741 gttccatacg tttcacgatg cttatcgaaa ggattttcag tgtctaagta gccgatgatg
     4801 tcaccagtaa atggagaggt tttcacttcc tctacttcga gttgagggca gaataaaatt
     4861 tgttggccat ctgctcgaac aagtaatgcg aataatcgtt catgtggttc agatttatag
     4921 ccagtcaaat agaagatgtt aatcgggttg gacacccaca tcgcatctgc ttgttgctcc
     4981 tttaatgttt gaacgagttg ttctattttt gacataaaaa cgcctccttt atttcttcat
     5041 attcatttta agtcagttga tttgagaatg caaagtgcgc acgctttgat gtttaaatca
     5101 tattggtgaa gtgaataaaa atagcagaag ttattttgtt ttttagaaat aagtattata
     5161 aaaagcactt taaatatggg ggtgctagtt gtaaatttta gatttatgtt gaagcccctg
     5221 ttaatataaa gttaggaatc tgcattacac atgatgaagg aggatgcgaa catgaaatta
     5281 tcttttcatg gtcaatcgac tgtatatttt gaagcaaatg ggaaatcagg tattattgat
     5341 ccgtttatta caggaaatgg acaaacagat ttaaatgttg aggatttaaa agtagactac
     5401 gtgattttaa cacacggtca cgaagatcat tttggagata cgattgaaat tgctaagcgt
     5461 aataacgcaa cagtcattgg ctcagctgaa atggcgaatt atttatctac aaaccaaggc
     5521 gttgaaaatg tacaccctat gaatattgga gggaaatgga catttgattt tggtgtcgtt
     5581 aaatttgttc aagcgtttca cagttcaagt ttaacagatg acaatggtat tccgatgtac
     5641 ttaggtatgc cgatgggtgt cattttagaa ttagaaggta aaacgattta tcatacaggt
     5701 gatacaggct tattcagcga catgaaatta attgctgatc gtcatcctgt tgatgtatgc
     5761 tttgtaccaa ttggtgataa ttttactatg ggtattgaag atgcaagtta tgcgattaat
     5821 gaattcatcc aacctaagtt gactgtgccg attcattata ataccttccc attgattgaa
     5881 caagatccag aagcgtttaa aaagcttgtg aatgtcgggg aagtgcaaat tgtcaaacct
     5941 ggtggcgttg ttgaactata gaggttgttt ttatacagct tatataacaa tttgagctca
     6001 ttacaaagcg tgttaaacga aagactgtag aactattctt cattaatgaa agttttgact
     6061 gatggtgtag cttatttggg ctatctttcc taggcgctgg tctggccccc gcaaggctga
     6121 ctagacttct caaaagggta tgcattgaaa agtcaggtag ctactgcgtt aaacggtagt
     6181 cacttttaaa gttaaatgct gttaactcat ttctcaggag tgtcacccaa gcgcctaacc
     6241 tttagtcaaa catctgagtg gaattgaaga atagtgctca caatcttttt tatttttggg
     6301 tcataaactt tgcgtatttt aggaaatgtc ggttacataa caattcatat atgcgtgatt
     6361 cgaatctgtt tttgcaatta aagaacttta atgtaaatat tgttttttga tgttaaaaca
     6421 catttgctac actagttaat tgatacataa taaaaagggg gctggacgtt gatttgtccg
     6481 aaccccttga ttgattgtga tttaataatg tggcgcataa gaatcattca gtttttatag
     6541 gttgaatgga ttacgttagt ttgctgtgtt gattttactt tacgattaac actggtattt
     6601 tggcgcgttt tgcgacttta tggctcacgc tacctaatac gaacttcttc gctgcttctg
     6661 ctttacgatt actgagcacg acgatatcgt attgaccgct gttcgcatag tttacgattt
     6721 tttcttttgg attgccacgt tcgataattt cttcatattg caaaccattt tgttctaatg
     6781 tgtcacgtgt cggtttcatt tgttcgtgac gcatttgttt aagttcttca taatgtgtcc
     6841 ccattttaac agaagcttgg acgtcttgtt ctccgatgat attgagcaat gtcacaacgg
     6901 agttgtcgcc tgaaatttta acaacttctt ggagcgcttt cgcatttttt aaatctgtat
     6961 ccactgcaag taaaatattt tgatgcatct ctatcatcct ccttaaaact agtgtaacaa
     7021 aaatatcggt aaaagtgatt caatacatat gaagcaatgc gctttaacat cgaacatctt
     7081 aaaccgtcac tattttaacc ggtttaaaaa ggagttaaac atttattggt tatcacttcg
     7141 cattacgatt tgaaaaacgt tataataaaa gaaataaaat tgatgacatg ggaatttaga
     7201 agtagctcac aaatcaatca aggggtatct acttaaagat gaatcactat cttttattca
     7261 gagacatcac atcgtttagt gatatgacat aacaatagag ggagatacat gacaaagcac
     7321 gaacaaatta ttaaacacat tgaatcatta tctgtaggcc aaaaaatttc agtccgtaaa
     7381 atagcgaaag atttggacgt ttcagaaggg acggcatatc gtgcgattaa agatgcgggg
     7441 caacgtgggt tagtggcttc gattgatcgt gttggtacag tccgtattga aaagaaagcg
     7501 cgtgccaaag tcgatcatct aacatttgga gaaatagcga aaattgttga tggccattta
     7561 attggtggta aaggcggtca gttcaattca ctgactaaat ttgcgatagg agcgatggag
     7621 ctagacaatg tcgttaacta tgtctctaaa aatacgttgc tgattgtcgg aaatcgtctt
     7681 gatgttcaaa aagctgcgtt agaacggggc agtgccgtct tgattacagg tggttttgat
     7741 acgacggacg aaattaagaa aatggcagat gaacaaaatc tacctatcat ttcttccaat
     7801 tatgatacat ttatggttgc gaatattatt aatagagcga tgtacaatca gatgattaaa
     7861 aaagagattt tagtcgttga agatatcgtg attccaatcg aacagacttc ttttttatac
     7921 gatgaaatga ctgttggtga tgtaggtaaa aaatctcgag aaacgtcaca ttctcgtttt
     7981 ccgattgtgg accgtcagaa caaattagcg ggtttaatta ctagtaaaga cattatcggc
     8041 aaagatttgg acgaaaaact ttatcgtgtc atgacgaaac ccgcgattag tgtccagctg
     8101 agtacgacgg tggcgagttg tgcgcatttg atgatctggg agggtattga attactgcca
     8161 gttacaggaa atcaaaaaca acttgtcggc gttatttcac gtgaagatgt tctgaaagcg
     8221 atgcaaattg tcgggcgaca gccacaagta ggcgaaacga ttaatgatca agtggcgaaa
     8281 catattgaga ttcgcaatca acaaatcatt gtcgaaatta caccgcaact gacaaatcaa
     8341 ttcggcacat tgagtaaatc tgtatcggtc gctatcattg aagaaacgat taaatctgta
     8401 atgcgcaaac ataaaaagtt agaagtgatg attgagagtt taaatatctt ttatattcga
     8461 actgtacaaa ttgaaagtga agtagaagtg gattatacca ttttagatat gggacgtaat
     8521 tttgcgaaat tagaagtaac gatgttcagt gcgaaccagc ctgttgcaaa agcattaatt
     8581 atgtgccaat tattagatca ttaaggagcg ttgagtatga aatttattcc agaaattcaa
     8641 gaacaaattc aacaatatga cacgattatt attcaccgtc atgtccgacc tgacccagat
     8701 gcattagggt cgcagtttgg attgaaagaa tacctcatag cgaaatatcc aactaaaaat
     8761 gtctatgctg ttggaacgga agaaccgaca cttggattta tgggaacgtt tgatacgatt
     8821 gatgatgcgc aatatgacga tgcacttgtc attgtatgtg acacagcaaa cgccgctcgt
     8881 attgacgatg ctcgttacga tcgcggcaac gcattaatta aaatcgacca tcatccccct
     8941 gtagattcat atgcggaaat caatgatgtt gatgtgagtg cttcatctac tagtgagatg
     9001 attttcgatt tgatacaagg ttcaaatgat ttagctttaa tgaacgacaa aattgcgagt
     9061 gcgttatatt taggtattgt tggcgataca ggtcgctttt tcttcaacaa tacatcgccg
     9121 aaaacgatga ccatcgcaag tcagttgtta caatatgata ttcaacacaa ccgtctatta
     9181 aatcagttgg gcgaaaagga tccacggtta atgccgtttc atggctatgt actgcaaaat
     9241 ttccaacttt ttgaagatgg tttttgccag gtgaaaatta cgcatgacgt gttagaaaaa
     9301 tttgatatcc aaccgaatga agcgtcgttg tatgtgaatg caattgccga tttaaaaggc
     9361 ttgaaaattt ggatatttgc ggtagacgaa ggtgaagaaa tccgttgtcg catccgttca
     9421 aaagagatta cgattaatga tgttgcgggt gactttggtg ggggtggaca tccaaatgct
     9481 tcaggtgtgt ctgtccatac atgggatgaa tttgaatcac ttaccgaagc gctccgccaa
     9541 aaactataac aggttaaaga aggtgactta acgatggttg cacatttaaa tattcatacg
     9601 gcttatgatc ttttgaattc gagtattacg atcgaagggg ccgttcagcg cacaattgaa
     9661 ttaggatatt cagccatcgc gattaccgac ttgaatgtca tgtatggtgt gccgcagttt
     9721 tatgacgcgt gtattcagca tggcattaaa cctttattag ggatgactgt ttacctcact
     9781 gatcaattga atgtgctaga agcggtagtc attgctaaaa ataatgaggg gttgcaaaac
     9841 ttatttaaat tgtcatctga tattaaagta aatcgaatta aacatgtatc catttatgaa
     9901 aagaaagatt tgtttaatga tacggtcgtt atttttaagc agatgacgaa ccaagaaaag
     9961 cattggcatg aagaaatgcc tgacggggta acatgtttta cagaccatca atcggccgag
    10021 gattgtgagt tgcccaaagt tttgatgcag gcggcgtatt atgaaaaggc agaagataaa
    10081 aatgcgttaa aagtgttaca tgcgattcgt gataatacga aagtcaattt ggtggattca
    10141 cacgaaacac caacagaaca tatatatgat gtcgatgcat tgtatgattc gcaatttgcg
    10201 gaagcatggc tcgcacgtac agatgaaatt gcgaatatgt gtgatgctaa actcgagtat
    10261 catcaagctt tgttgcccga atttgtaacg ccagacggta gttcagcaaa tgcttactta
    10321 tgggctgagt tagaacgtgc acttgcggat tttggactga cagaagcgcg ctatcgtaaa
    10381 cgtttaaaat atgaatatga cgtcatcaca cagatggggt acgcggatta ctttttaatt
    10441 gtgagtgatt taattcgtta tgccaaatca aatggtgtca tggtcggtcc aggacggggc
    10501 tcttcagcgg gttcattagt gagttattta ttaaatatca cgacaattga cccgcttcaa
    10561 tatgatttac tgtttgaacg ttttctaaat cctgagcgtg tgacgatgcc agatatcgat
    10621 attgactttg aggatacgca acgtgaaaaa gtgattcatt atgtccaaca aaagtatggt
    10681 gattaccgtg ttgcgggtat tgtgacgttt ggccatctac ttgcgaaagc cgtcgcacga
    10741 gatgtggggc gcgtgatggg ctttgatgaa acgacgttaa gtgaagcttc taaattaatt
    10801 cctagtaaac tgggagtcac attggatgag gcctataaag aagaacgttt taaagcattt
    10861 gtccatcgca atcatcgtca tgaacggtgg tttgagtatt gtaaaaagtt agaagggtta
    10921 ccgcgaaata cgtcgacgca tgcggcaggt gtcattgtga acgaccaacc gctatatcaa
    10981 tctatcccgt taacagaagg cgagacaggt ttgctgacac aatggacgat gacggaagca
    11041 gaacgcattg gtttattaaa aatcgacttt ttaggactgc gaaacttaac gattattcat
    11101 caaatcatca aacaagtggc gcgtgattta aaagttgaca tcgatgttga acaaattcct
    11161 tttgatgatg tacacgtctt tgaactattg tcacgtggcg atacgacagg aattttccaa
    11221 cttgagtctg aaggtgtgcg acgtgtttta caaaaattac agcccgaaca ttttgaagat
    11281 atcgttgcgg tgacgtctct ttatcgaccg gggccaatgg aagaaattcc gacctacatt
    11341 cgtcgtcggc acgatccaag tcaagtcacg tatttgcatc cagatttggc gccgattttg
    11401 aaacgtacat atggagtgat tatttaccaa gagcagatca tgcaaattgc gagtcagttt
    11461 gcaggatttt cttatggtga agcggatatt ttacggcgtg ccatgagtaa aaagaataga
    11521 gaagtccttg aaaatgaacg gcaacatttt attgatggtg caaaagaaaa aggctatgct
    11581 gagacgttaa gtggtcaaat ttttgattta atcttaaaat ttgcggacta cggttttcca
    11641 cgtgcgcacg cggtaagtta ttctaagatt gcatacatca tgacctattt aaaagtgcat
    11701 tatcctgctt atttttatgc gaacatttta agcaacgtga ttggtaatga cacgaaaaca
    11761 aacatgatga ttcaagaggc gaaacagcag cacattacaa ttcacggtcc gcatattaac
    11821 aaaagtcaat ggcgttatgt tgcgacacaa gagggcgtct atatttcatt aggtgcgatt
    11881 aaaggtgtcg gttatcaaac ggtacaaacg ataatgaatg aaagacgtga acaggggcct
    11941 tacaaagact tctttgattt ctgtaatcga attcccggtc gcttaagatc gcgacgtaca
    12001 ttagaagcat tgattttgac aggtgcgatg gattgttttg gcaagaaccg tgcgacctta
    12061 ttacaatcaa ttgataaggt gtcagataca gatgtcagta ttgataccga tcttctggcc
    12121 agtgttgcaa ccattaaaca agaatatgcg gaaactgaag aaatgccgag tcaacaatta
    12181 agtgatttcg aaaagcagta tttaggcttt tacgtgactg cacatcctgt tgaaaaggcg
    12241 tttaagcaaa aacaatatct tggtattttt caacttcaag cacatgtcac gcaccaacct
    12301 attttagtta cattagatgc tgtacgggtc attcgaacga aacaaggtca acagatggcg
    12361 tttgttgagt tgaatgacgg cataacgaca atggacggtg tcatcttccc aaaaacgtat
    12421 cagcaattaa ccggaacttt ggagacatca aagttttata tcatttgggg caagttcgaa
    12481 aagagaaatg ataaacttca attgattatc aaccgattga cgactttaga agcttttgaa
    12541 atagaaaaaa gacagcaaac gcgcaaaatt gtcattagag aaggtatgac cgatacacta
    12601 gagcaacagt atttaaccca aaaacaatcg aacaacaata tcgctgtgta ccaatatcaa
    12661 gaaagcaaca atcaatttct atttaaaggt tatttattgc aaccaaatct ctatttagat
    12721 gcacttttag actcgattaa acctgaacat atccgtttgt tataatgcta tggtattttg
    12781 cacgggtaag tgatgatgta agcgttaaac ctgactttga tatacggata taatgtgcta
    12841 tagtataatg gcgattaaaa gaggacttaa aaaatagttg gaatttgaaa atgggagatg
    12901 attatgaatg tccttaagag atgatgcact gcaaatgcat aaagaaaatc atggaaaatt
    12961 agccgttagt ccaaaagtta aggtaacgaa taaagaggaa ttaagcttag cctattctcc
    13021 aggtgtagct gaaccttgta aagatataca tgaaagaccg agtcgtgttt atgattatac
    13081 aatgaaaagt aacatggtgg ccgttatttc agatggtacg gctgttctcg gactcggaaa
    13141 tatcggtgct gaagcgagta tcccggttat ggagggaaaa gctgtactgt tcaaaagttt
    13201 cgcaggcgtt gatgccttcc cattgtcact tgcaacgaat gacacagaag aaattatccg
    13261 tacagtgaaa ctcgtggaac ctaactttgg cggtgtcaat ttagaggaca tttctgcacc
    13321 gcgttgtttt gaaattgaag aacgcctgaa aaaagagaca agaattccag tttttcatga
    13381 tgatcagcat ggtacggcta tcgtaacagt agccggttta gtcaatgcat tacgtattgt
    13441 tgataaagac ttagcggata ttaaagtagt acttaacggt gcgggtgctg ccggtattgc
    13501 gattgttaaa ttactttatt catatggtgt acgtcatatg attatgtgtg attctaaagg
    13561 tgccatttat gaaggacgtc catatgggat gaatgaaacg aaagatactg tagcgaaatg
    13621 gacgaataaa gataaaattg aaggaaaatt ggttgatgtc atcgaagacg cagatgtttt
    13681 catcggtgtc tcagttgcag atgcactctc tgaagaaatg gtccagtcta tgaatgatga
    13741 tgctattatt ttcgcaatgg caaacccaaa ccctgaaatc acgccagaca aagctaagca
    13801 tgcaggtgct aaagttattg gtacaggacg ttcagacttt ccaaaccaaa ttaataatgt
    13861 attggcattc ccaggtattt tccgtggtgc attagatgta cgtgcgactc atatcaatga
    13921 agaaatgaaa cgtgcagctg ttgaagcgat tgctaactta attacggatg aagagcgcaa
    13981 cccagattac gttattcctg gtccgttcga ttatcgtgtt gcgccgtctg tagcacgaga
    14041 agtagcacgt gcagcgatgg aatcaggggt agcccgtatc gaagtcgacc cagacgatgt
    14101 atatgagaag acgttatcac tcacagattt aaagaaataa tacaagcttg attgatagcc
    14161 catggaaaag tggaggtaat aaagatgttt aaagactttt ttaaccgtaa ttctaaaaag
    14221 aaaaaatatg ttacggttca agattcgaaa caaaatgaag ttcctgaagg cataatgacg
    14281 aaatgtccaa actgtaaaaa aataatgtac acaaaagagc tcactgaaaa tttaaatgta
    14341 tgttttaatt gtgatcatca tattcaatta tcagcttatg gccgtattga agcaattgcc
    14401 gataatggaa cttttgaaga atttgataaa gggatgacct ctgcaaatcc gttaaacttt
    14461 cctggctatg aagaaaaggt tgaaaaagac caagagaaaa caggattaaa tgaagcgatt
    14521 gtcactggaa ctgcagaact caatggcatt aagtttggta ttggcgtcat ggacccgaga
    14581 tttagaatgg ggagtatggg ttctgtagtc ggtgaaaaaa tttgtcgtat tgtcgatcat
    14641 tgtacagaag agcgactccc attcgtctta tttacggctt ctggtggggc acgtatgcaa
    14701 gaaggaatta tttcgctcat gcaaatggct aaaacaagtg tatcgttaga aaaacactct
    14761 gatgcaggtc tattattcat ttcctatatg acacatccga caacaggtgg tgtatctgca
    14821 agttttgcat cagtaggtga tattaacttg gcagaaccga aagccttaat cgggtttgca
    14881 ggccgacgtg ttatcgagca gacaattaat gaaaaattac ctgatgattt ccaaacggct
    14941 gagtttttat tagaacatgg tcagcttgat aaagttgtgc atcgtagtga aatgaagaaa
    15001 acgttagcga cgttatttga tatgcatcgt gaggtggaaa agtaatgctt gattttgaaa
    15061 aaccgatcca agacatacaa actaaaattg aatcattgaa agaaacgcaa gcgaaaaatg
    15121 atgtcgattt atcagatgaa atcgaaattc ttgaagccgc attgcaaaca gaaaaagaaa
    15181 agatttacac ttccttaaaa ccgtgggatc gtgttcaaat agcaagatta cctgaaagac
    15241 cgactgtact cgactatatt ccatacattt ttgatgattt tatcgaatta catggcgatc
    15301 gtaactttag agatgaccca gctatcgtag ggggattagc ctatttcaat ggtcaacctg
    15361 tgacagtgat tggtcaacag cgcggtaaag atacgaaaga taatatttac cgtaactttg
    15421 gtatggcgca ccctgaaggt tatcgaaaag cgttgagatt gatgaaagaa gccgagaagt
    15481 ttaatcgtcc tatttttaca tttattgata cgaaaggcgc atatccaggt aaagcagccg
    15541 aagaacgtgg tcaaagcgag tcaatcgcac gtaaccttgt ttcaatggca gggttaacag
    15601 tacctgtcat ttcaattgtg attggtgaag gtggaagcgg tggcgcatta ggtcttggtg
    15661 tgagtaatcg tttattgatg ttagaaaaca gtacatactc tgtcatttca ccagaaggcg
    15721 cggctggtat tttatggaaa gacagttctc tggctaaaat tgctgcagaa acgatgaaaa
    15781 taacagcata cgatttgcta gaattaaaca ttattgacga agtggtgaaa gagccgttag
    15841 gtggcgcgca tcatgacgtt gagatgttag cgaaacgcat taagcaaaag tttaccaagc
    15901 atttagcatc gtttgaacat atgacaccta ctgatattaa agaagatcgt tttgaaaaat
    15961 tccgcaatat tggttcgttt gttgaataag tctatgtaaa aagcatagta tgaagtctct
    16021 gaattatgag acttcatact attttttgat atacttgttt tgcttataga ggctattaat
    16081 tttgaattga actgtttgat gaaagggcag tcaagtcatc aagtgaatta atcaatgcac
    16141 ttaataggca tatcctgcac gattcaccat tttcaatatg gcaatgaatc gttacgttct
    16201 atattgatat acaaaaataa ttgtgtcatc tataatagta tgtgaagaaa taagcaaagt
    16261 tgtgcgttga atatcactat ggaatatttt ttaattttta gtagaattat agcaaaaaat
    16321 cttaaaatgc gca
//
LOCUS       DANHOL010000049        16114 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.049, whole genome shotgun sequence.
ACCESSION   DANHOL010000049 DANHOL010000000
VERSION     DANHOL010000049.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 16114)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16114)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16114
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.049"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(<1..327)
                     /locus_tag="PTC08_001121"
     CDS             complement(<1..327)
                     /locus_tag="PTC08_001121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682635.1"
                     /translation="MSLLNKYTEVIYSYIIGGLSILLSIIIFINIPLIQQFKSGKQPS
                     TNIDNLWDFIMAFFNEIIRVMSRYIGDIPLASGIVILLFGILMILIGRTLTNTTRFDY
                     DISILFL"
     gene            693..824
                     /gene="graF"
                     /locus_tag="PTC08_001122"
     CDS             693..824
                     /gene="graF"
                     /locus_tag="PTC08_001122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycopeptide resistance-associated protein GraF"
                     /protein_id="HDK5682636.1"
                     /translation="MGEKDIKKAAEQAKDKEKELKDKTEDAKDGAEKTKDDIQKTFE"
     regulatory      1666..1765
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            1890..2465
                     /locus_tag="PTC08_001123"
     CDS             1890..2465
                     /locus_tag="PTC08_001123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ECF transporter S component"
                     /protein_id="HDK5682637.1"
                     /translation="MKKGLTLSDILVTVLVSVIFAVIYNLWWAVTNTLQPLGLHLDQL
                     MYGMWFSAAVVAYLIIPKMGIALLAEFAAGAGETIMMGRFDIPTIIYALLQGLACEII
                     FAIFRYKSRAFMVAILAGMAAAIISLPIDWYYGYLNEVATWNLILLIAFRIISGAILA
                     GVFPYLLVKALDQTGVTKLFRPASKDDYDAL"
     gene            2478..3881
                     /locus_tag="PTC08_001124"
     CDS             2478..3881
                     /locus_tag="PTC08_001124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDK5682638.1"
                     /translation="MLKVKNLRLKYPSADYKIFDGIDVEIKDKEKVLLLGPSGSGKST
                     LLNVLSGIVPNLIDLPMKYDALEIAENSGVIFQDPDSQFCMPQVNEELAFILENQQIP
                     RHDMDSRIHEALNHVGLDVNPKQRIHQLSGGMKQKLAIAGTLLQGADTLFLDEPTAML
                     DVEATENLWNLLKDLWEDKTVLIVEHKVEHIWQHVDRVILMNHHGHIIQQGTPEYIMA
                     HYESLLSEYGVWHPKAWSHAPMPQHPVQSTAQNFYFSFEQGAIQRGRRTLYEVDALHI
                     EPGEWITLTGKNGSGKTSLLESMMQLIRYKGNMHYGGQKLTRIKDAAQHMFLVYQNPE
                     LQFIQNSVFDEIWVNYHHMDPEHAKAKTAEMLALLDLEHVSSQHPFELSMGQKRRLSV
                     ATALSTNADIILLDEPTFGLDSHNTFKLIELFQSRIAQGQTILMVTHDAHIIERYPTR
                     RIEVKEGKLYEVEEVRT"
     gene            3878..4669
                     /locus_tag="PTC08_001125"
     CDS             3878..4669
                     /locus_tag="PTC08_001125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor transporter transmembrane
                     protein EcfT"
                     /protein_id="HDK5682639.1"
                     /translation="MIESWKTRHTFMDDVNIVTKLFLGVALFFFIIFVHHFDVMIYLA
                     TLMLIFMLLVAGTKWKVVLTFTILATFFALTSSLFMIFYGDGQHELLKFGFVNITTES
                     LVRGLHLSFRTMTVSYFGLSIAFTSQVIMIFYSLMQHLKVKPKIAYAFMAAFRMIPIM
                     LESLFQLRNALKMRYQMIDNRNYSGFKRLKHLLIPLLSQNIRKAHRLSVAMEKKGFKD
                     GPRTYYYHVPFSYKDLILIGLTVVIVILAFTFAQMLPITGITDAR"
     gene            complement(4889..6142)
                     /locus_tag="PTC08_001126"
     CDS             complement(4889..6142)
                     /locus_tag="PTC08_001126"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HDK5682640.1"
                     /translation="MHVLVVGGGGREHILAHKLNQSPLVSQVYAIPGNAAMTHVAEVH
                     GEIAESDHEAIVAFAQAHDVTWVVIGPEQPLTDGLADALRAVDIKVFGPNQDAAQIEG
                     SKSFAKRLMAKYDIPTAAYREIDQKDEAVAYIETCELPIVLKKDGLAAGKGVIIAETR
                     EQAREAVETLYPEANSKVVFEQFLEGEEFSLMTFVNGDYAVPFDTIAQDHKRAYDQDK
                     GPNTGGMGAYCPVPHMSQSVLDEANDKIAQPIAKAMQAEGHDFFGLLYIGAILTKEGP
                     KVIEFNARFGDPEAQVLLTRLESDLMAHIIELDEKAPINMKWKDDAVVGVMLASKGYP
                     GAYEKGATVKGFEDEPGAYFVSGLTHDGEHYVTSGGRVILAIGEGATIEAAQQAAYAR
                     VEKIESDGLFYRQDIAHKAIKANEY"
     gene            complement(6160..7638)
                     /gene="purH"
                     /locus_tag="PTC08_001127"
     CDS             complement(6160..7638)
                     /gene="purH"
                     /locus_tag="PTC08_001127"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HDK5682641.1"
                     /translation="MKKAILSVSDKTGIVPFAQSLVEAGYELYSTGGTFRAIDEAGVK
                     VTSVSELTQFEEIMDGRVKTLHPAVHGGILADRDKPEHLEQLKGQNIDLIDMVVVNLY
                     PFKETVKNPDVTEMDAIENIDIGGPTMLRAAAKNFKHVTTIVDPTDYDEVIQRIQNGS
                     LDEAFRKSLMIKVFQHTFEYDQAITQFFGHQLEQLRYGENPQQSAQFIRTSTAKNTIA
                     GATQLHGKQLSYNNIKDADAALSLVKQFEQPAAVAVKHMNPCGVGTGENIHAAYTHAY
                     EADSQSIFGGIVALNRPVTAELAEDLHAIFLEVVIAPKFEQAALNILQQKKNIRLLEI
                     EMTEEADATEFVSVSGGYLVQDKDRFDVAQADMTVVTDVKPTKEQWDALLLGWKVVKS
                     VKSNAIVLANDKQTVGIGAGQMNRVGSAKIAIDRAIEINDNVVLASDGFFPMGDTVET
                     AAKAGIKAIIQPGGSIKDQESIDMANRYGIAMVTTGMRHFKH"
     gene            complement(7655..8221)
                     /gene="purN"
                     /locus_tag="PTC08_001128"
     CDS             complement(7655..8221)
                     /gene="purN"
                     /locus_tag="PTC08_001128"
                     /EC_number="2.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="HDK5682642.1"
                     /translation="MVKIAIFASGSGTNFDNIMKRVKSGELAHIEVTALYTDKPEAAC
                     VQLAQQHGIPVHAFEPRTFDDKVAYEAAVLNWLRQEDVEWIVLAGYMRLIDETLLSAY
                     EGRILNIHPSLLPKYKGKNAVGQALNSGDKETGSTVHYVDAGMDTGQMIEQRTCPIYE
                     DDTQQSLEERIKSLEYELYPTVIKKIIR"
     gene            complement(8221..9252)
                     /locus_tag="PTC08_001129"
     CDS             complement(8221..9252)
                     /locus_tag="PTC08_001129"
                     /EC_number="6.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine cyclo-ligase"
                     /protein_id="HDK5682643.1"
                     /translation="MAESYKKAGVDIEAGYEAVKRMSSHVERTMRKEVLGGLGGFGAT
                     FDLSQLNMKAPVLVSGTDGVGTKLKLAIDYDKHDTIGIDAVAMCVNDILTTGAEPLYF
                     LDYIATHKVVPEIIEQIVKGISDGCVETNTALIGGETAEMGEMYHEGEYDVAGFAVGA
                     VEKEEYIDGSKVEKGDVIIGLASNGIHSNGYSLVRRLVAESGIDVNDTFEGEQSFLDM
                     LLTPTALYVSPVLTVKKDVQIKAMTHITGGGFYENIPRALPEGKTAVVNTASFPTPAI
                     FNWLQAQGNIDTDEMYHIFNMGIGFTLIVAPEDEVAVHEILKNANVDAYTIGHIAEED
                     SAIRLTEAK"
     gene            complement(9256..10677)
                     /locus_tag="PTC08_001130"
     CDS             complement(9256..10677)
                     /locus_tag="PTC08_001130"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HDK5682644.1"
                     /translation="MYDIRGLNEECGVFGIWNHPHAAYLTYMALHSLQHRGQEGAGIV
                     CSNGEQLFGARGMGLLTEAISQQQLESLQGYPNAIGHVRYATTGASEISNVQPFLFKH
                     SKGDLGLAHNGNLTNAHQIRLAIESTGGIFQTTSDSEVLAHLLIKGKSENIKTNQKAA
                     LNQVKGAFSCVILNEEQLTATRDNRGVRPLMLGQVDGAYCVASETCAFTAIGAEYIRD
                     IEPGELITFSGENEVDYDMYTQDIGHKMCSMEYVYFARPDSEFHRHSIYNVRKALGRK
                     LAEEMGIDADIVIGVPDSSLQAAKGFSEQTGIPNEQGLLKNRYIGRTFITPDQSVRER
                     QVRMKHSPIRDVIEGKRVVVIDDSIVRGTTSKYIVKALKSAGAKEVHMGISSPPLKDP
                     CYYGIDVSTHAELMAAQHTVEEIREMIGADTLTYLSVEGMHEVFKAHDSKGECNACFT
                     GEYPIEIVDHELPEVKEMKRRGV"
     gene            complement(10656..12845)
                     /gene="purL"
                     /locus_tag="PTC08_001131"
     CDS             complement(10656..12845)
                     /gene="purL"
                     /locus_tag="PTC08_001131"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurL"
                     /protein_id="HDK5682645.1"
                     /translation="MPKFLEPTAEEVKVEKLYRDMGLSDAEFEKVTEILGRTPNFTET
                     GIFSVMWSEHCSYKHSKPFLKQFPTTGEHVLMGPGEGAGVVDIGDNQAVVFKVESHNH
                     PSAIEPYQGAATGVGGIIRDIVSIGARPINLLNSLRFGELTEKTNRRLLRGVVAGIGG
                     YGNCIGIPTTAGEIEFDERYDGNPLVNAMCVGVIDHDMIQKGTAKGVGNSVIYVGLKT
                     GRDGIHGATFASEELTEESESKRPSVQIGDPFVGKKLMEATLEAITYDELVGIQDMGA
                     AGLTSSSSEMAAKGGSGIHLELEKVPVREKGISPYEMMLSETQERMLLVVKKGTEQKF
                     LDLFDYHELDSAVIGEVTDTNRFVLTYEGEVFADIPVEPLADEAPVYILEGEPLQHDT
                     APNRYDDIDVNDVFDRLLTHPTIASKHYLYDQYDQQVGANTIIKPGLQASVVRVEGTN
                     KAIASTIDGEARYVFNDPYEGGKMVVAEAYRNLIAVGAKPLAMTDCLNYGSPEKKHIY
                     QQLTDSTRGMAEACEALATPVVSGNVSLYNETRTSSIFPTPVVGMVGLIENIDFLKSY
                     QPSIGDTLYVIGETTDSYGGSQIEKLLYSDVNHEVEKVDLSQEAAKGEAIRGAIREGV
                     ISHTQTVGKGGIAITLAKISAHYSLGIDAEVNLTNAQLFSETQGRYIVAVKAGQTLNI
                     EGATRIGTLTDTDDFKVVAQDSVIERRTSELKREWEGAIESCMTSVD"
     gene            complement(12838..13509)
                     /gene="purQ"
                     /locus_tag="PTC08_001132"
     CDS             complement(12838..13509)
                     /gene="purQ"
                     /locus_tag="PTC08_001132"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase I"
                     /protein_id="HDK5682646.1"
                     /translation="MKFAVLRFPGSNCDRDMYNAALKSGVDADYVDYRETSLKGYDGV
                     LIPGGFSFGDYLRSGAVASVAPIIAEVKRLADEGKPVLGVCNGFQILTEIGLLPGALL
                     HNDSHLFVSRNEHLKIVNNQTPFTKGYSEGEEVVYPVAHGEGHYYCTEEIYQELIDNN
                     QIILKYIDNPNGSHDDIAGIVNKAGNVCGMMPHPERALEAILGTDSGVKLFESMVNSW
                     REQNA"
     gene            complement(13511..13771)
                     /gene="purS"
                     /locus_tag="PTC08_001133"
     CDS             complement(13511..13771)
                     /gene="purS"
                     /locus_tag="PTC08_001133"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurS"
                     /protein_id="HDK5682647.1"
                     /translation="MKTIELHITLQPQVLDTQGQALTRAVHDLGYEQVNDIRVGKVLY
                     MTVDEATDEAVHNVVTTLSEKLFANTVIEEYSYKVLDEKENQ"
     gene            complement(13774..14475)
                     /locus_tag="PTC08_001134"
     CDS             complement(13774..14475)
                     /locus_tag="PTC08_001134"
                     /EC_number="6.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011303439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HDK5682648.1"
                     /translation="MSLLYEGKAKRVFSTEQPDVLRIEYKDEVTAGNGAKKDAMVGKG
                     RLNNQITSRIFEYIKNEGIESHFVEQLSETEQLVKAVNIVPLEVVVRNIAAGSITKRL
                     GFEKGHVFDYPFVEFFYKNDDLNDPLITDDHVKLLGVADDAMIAQLKEQALRINQALI
                     KLMDEMGLALVDFKIEFGVDHEGQLLLADEISPDTCRIWDKATQENFDKDVYREDTGS
                     LIDTYQTFLNKLEAL"
     gene            complement(14472..15644)
                     /gene="purK"
                     /locus_tag="PTC08_001135"
     CDS             complement(14472..15644)
                     /gene="purK"
                     /locus_tag="PTC08_001135"
                     /EC_number="6.3.4.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide
                     synthase"
                     /protein_id="HDK5682649.1"
                     /translation="MNNRLLRKWRRCKMIFNKLQIGQTVGIIGGGQLGKMMAQSAQKM
                     GFKVVVLDPDETCPCRYVAHEFIHAAYDDMPALERLGERSDVITYEFENIAAEQLQTL
                     VSKYNVPQSYQAIQLLQDRLTEKQTLAQAGTKVVPFVQVTSVADLDEAVQTLGFPFML
                     KTRFGGYDGKGQIRLTSEAQLDEARELIANQECVAEQFLDLAKEVSLTVTIGNEGQMV
                     YFPLQENEHRNQVLFKTVVPARANHEQEARREVDKITQAVHFVGTFTVEFFIDQQNEL
                     YVNEIAPRPHNSGHYSIEACDYSQFDTHILAVTGHRLPEHIELLKPAIMMNLLGKDLD
                     LLEKELFAHPDWHVHLYGKVSRKPERKMGHLTILTDDVSKTEQQLVAKFEGRDEYK"
     gene            complement(15592..16074)
                     /gene="purE"
                     /locus_tag="PTC08_001136"
     CDS             complement(15592..16074)
                     /gene="purE"
                     /locus_tag="PTC08_001136"
                     /EC_number="4.1.1.21"
                     /EC_number="5.4.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002465404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide mutase"
                     /protein_id="HDK5682650.1"
                     /translation="MKVAVIMGSSSDWNVMKEACAMLEEFNIPYDQKVVSAHRTPHMM
                     VDFATNARSNGYHVVIAGAGGAAHLPGMVASMTTLPVIGVPIESKSLKGLDSLLSIVQ
                     MPGGIPVATTAIGQAGAKNAGILAARMIGMTDQEVQRKLEVYEQSLVEKVEAMQDDLQ
                     "
BASE COUNT         4533 a         3463 c         2908 g         5210 t
ORIGIN      
        1 taaaaataat attgaaatgt cataatcaaa tcgtgttgta ttcgttaatg tccgaccaat
       61 taaaatcatt aaaattccaa acaataaaat aacaatgccg ctcgcaagtg gaatgtcacc
      121 aatatatcga ctcatgactc gaatgatttc attaaagaat gccataataa aatcccacaa
      181 attgtcgatg tttgtgctcg gttgtttgcc tgacttaaac tgttgaatga gtggaatatt
      241 aataaaaata atgatgctta ataaaattga aagtccaccg ataatatagc tataaatcac
      301 ttcggtgtat ttgtttaaca aagacatcct ctcacctcaa agctattata tacgaactct
      361 tgtcacctgt ctttatattt caaaaatatc agtcttcaga atgacctatt aaatttaatc
      421 cataatacta taataaaacg gatttatttt cagtttcaaa tatcttaatt atctatgtgt
      481 tgtttttacc ttaaaatgat gcgttaagta tatcaaagtt catttatttt tatacgagaa
      541 taggagataa aatatttaat atgtctctat agctaggcgc acgtgatgtc caatcctcat
      601 ttctgtatac atttaataag gcgatgatgt ttaggttgtg cacataaagg ttatattgat
      661 gatacaaaca atttgaaagg taggcgttgg aaatgggtga aaaagatatt aaaaaagctg
      721 cagaacaagc gaaggataaa gagaaagaat tgaaagataa gactgaagat gcgaaagatg
      781 gtgcagagaa aacgaaagat gatattcaaa aaacatttga gtaaacttta atttatgttt
      841 aatgtgtgag gaacaggatg attatggcct gttccttttt tcgttttaaa ttatttcttt
      901 ttcatttgtt taatttcatc gtttcttaca gattgacaaa ctagctcttg ctttcccaag
      961 gtcttgactc aactaagttt ggcttgattt aagtgtaaac ttgagagaaa ccaaattgga
     1021 ttttgggagc attacagaaa tctcatgtgt aacaaagatt tcgttttcct gcccccacaa
     1081 gactgagtgg ccttctcaaa aatgcaaaca ttgagactta ggcagctacg tcgctaaaca
     1141 gtaaccacta ttagagtaaa gaagtaacta tgagtcatat acacgcatcc ctcgggagtc
     1201 tcgagccgtc ccgtcaacct tcaacgagtc tcattaacta tgatagtgaa atgcttttaa
     1261 tgaaaaaatt aaattcacct ctcctcaaat cgctcgcctc gtcatcaaaa acaaattcta
     1321 actttgaata tgcatatcat ctttattact ttaggctgca gatgctggca attgtttaag
     1381 tagctcaact ctgacataga cagtgaaaga ttttgaaaac tacgtctagt gtttttcttc
     1441 aaatactgtc atttattgat gcacactgat gttgcattta tcaaaattca ttggggtcac
     1501 tgtcgtatcc tactttatgc atatgaactc acagtgagat ctttcgtatt cattttttca
     1561 atatatacat ttttaatggt ttagggtttt tcaaatttga atcatcagcc gtttgaaacc
     1621 ttgacttttc aatattctag gtgtacattg acattatcaa ttaaatacgc acactagggg
     1681 tgtgaaagct gagatgaggt gtcacctcaa accctttgaa cctgaactag atgatactag
     1741 cgtaggaaag tgttttgtta tgatatgtat attgtgcggt ggacttatgt ctgtcatacc
     1801 aataacgtat ccatatatca atgagcacat gatgcgccta tcttcagttt aagatatgcg
     1861 tattttttat ttttgggagg aatttacata tgaaaaaagg cttaacgttg tcagacatcc
     1921 tcgtcactgt actcgtatcc gtgatctttg cagtgattta taatttatgg tgggctgtca
     1981 caaatacttt acagccatta ggtttacatc ttgatcaatt aatgtatggt atgtggttta
     2041 gtgctgcagt cgttgcatat ctcattattc ctaaaatggg gattgcatta ttagctgaat
     2101 ttgctgcagg tgctggcgaa acaattatga tgggacgttt tgatatccca acaattattt
     2161 acgctttact tcaaggtttg gcatgtgaga ttatttttgc gattttccgc tacaaatcac
     2221 gtgcttttat ggtcgctatc cttgcaggta tggcagccgc aatcattagt ttacctatcg
     2281 actggtacta tggttactta aatgaagttg cgacttggaa cttaattcta ctgattgctt
     2341 ttcgtattat cagtggtgct atattagccg gtgtgttccc atacttactc gttaaggcat
     2401 tggatcagac tggcgtaacg aaactgtttc gtcctgcttc aaaagacgat tacgatgcat
     2461 tataagggtg acttatcgtg ttaaaagtta aaaatttacg tttaaaatac ccgagcgcag
     2521 attataaaat ttttgacggg attgacgtag aaatcaaaga taaagaaaaa gtacttttac
     2581 ttgggccatc tggttcgggt aaaagtacgt tactcaatgt attaagtggc attgtgccga
     2641 acttaattga tttaccaatg aaatatgatg cattagaaat tgctgaaaat tcaggtgtca
     2701 ttttccaaga cccggattcg cagttttgta tgccacaagt gaacgaagag ttagccttta
     2761 ttttagaaaa ccaacaaatt ccacgtcacg acatggacag ccgtatccat gaagcattaa
     2821 atcatgtcgg tcttgatgta aatccaaagc aacgtattca tcaattaagc ggcggtatga
     2881 aacaaaaatt agcgattgcg ggaacgttac ttcaaggggc agatacattg tttcttgacg
     2941 aaccgactgc gatgttagat gtagaagcga ccgaaaattt atggaatctt ttaaaggatt
     3001 tgtgggagga caagaccgta ctcattgtcg aacacaaggt agaacatatt tggcaacatg
     3061 tcgatcgtgt catactgatg aatcatcacg gccatattat ccaacaaggc acgcctgaat
     3121 atattatggc gcattacgaa tctttattaa gtgaatatgg tgtgtggcat ccaaaagcgt
     3181 ggtcacatgc acctatgcct caacatcccg ttcaatctac tgctcaaaat ttttattttt
     3241 cattcgaaca aggcgcgata caaaggggcc gtcgtacatt atatgaagta gacgcattac
     3301 atattgaacc gggagaatgg ataacactca ctgggaaaaa tggatcaggt aagacatcgc
     3361 tattagagtc gatgatgcaa ttgatacgtt ataaggggaa catgcattat ggcgggcaga
     3421 aattaactag aattaaagat gccgcgcaac atatgttttt agtgtatcaa aatcctgaac
     3481 tgcaatttat acaaaatagt gtgtttgatg aaatatgggt caactatcac catatggatc
     3541 ctgaacacgc gaaagcaaaa actgcagaaa tgttagcact acttgatttg gagcatgtgt
     3601 cgagtcaaca cccatttgaa ttatctatgg ggcaaaaacg tcgactgagt gtcgctaccg
     3661 cactaagtac caatgcagat attattttat tagatgaacc gacattcggc ttagacagtc
     3721 acaatacgtt taaattaatt gaattgttcc aaagtcgtat tgcgcaaggt cagacgattt
     3781 taatggtcac gcacgacgca catattatcg aacgttaccc tactcgtcgg atagaagtca
     3841 aagaaggcaa actttatgaa gtcgaggagg tgcgcacatg attgaatctt ggaaaacacg
     3901 tcacacgttc atggatgatg tgaatatcgt caccaaattg tttttaggcg tcgcactttt
     3961 cttcttcatt attttcgttc atcattttga cgtcatgatt tatcttgcga cattgatgct
     4021 catttttatg ttactcgttg cagggacaaa atggaaagtc gtcttgacgt tcacaatact
     4081 cgcaaccttt ttcgccctca cctcttcgtt atttatgatc ttttacggcg atgggcaaca
     4141 tgaattattg aaattcggct tcgtcaacat cacgacggaa agtcttgtgc gtggattgca
     4201 tctttcattc cggacgatga ctgtgagtta ttttgggttg tctattgcct ttacatcaca
     4261 agtcattatg attttttaca gcttgatgca acatttaaaa gtaaaaccga aaattgccta
     4321 tgcttttatg gcggcatttc gtatgattcc catcatgtta gagtcacttt ttcaactacg
     4381 caacgcctta aaaatgcgtt atcaaatgat tgataaccgc aactattcag gcttcaaacg
     4441 tctgaaacat ttattaattc cattgctcag tcaaaacatc agaaaagcgc atcgtctatc
     4501 tgtagcgatg gagaaaaaag gctttaaaga tggaccacgg acgtattatt atcatgtccc
     4561 gtttagttat aaagacttga ttctgattgg gctcactgtg gtcatcgtta tactcgcatt
     4621 tacattcgca caaatgttac cgataactgg tattactgat gcacgttaat cgaactgaga
     4681 ttttgcgttt tcatgatctc gacgatgtga aaaggcaggt ctagatttcc tttttaactt
     4741 tcccgtatga ccatctgcaa aggaaatcgt ttccctttat tgatttttga tagtcaataa
     4801 agggattttt attttttatt caacccaaaa aaagcgtaaa atccttagtc attttaccta
     4861 aaagatttta cgcatcttta atgttcattc aatattcatt cgctttaatc gctttatggg
     4921 caatgtcttg acgatagaat aaaccgtcac tttcaatttt ttcgacacgt gcataagctg
     4981 cttgttgtgc cgcttcgatt gtcgcgcctt caccaatcgc cagaatcacg cgtccacctg
     5041 atgtgacata gtgttctcca tcatgtgtta aaccactgac aaagtatgcg cctggttcat
     5101 cttcaaaacc tttgacagtt gcaccttttt catatgcacc tggataccct tttgaagcga
     5161 gcataacgcc tacaaccgca tcatctttcc acttcatatt aattggtgct ttttcatcta
     5221 attcaatgat gtgcgccatg agatcacttt ctaaacgtgt caataatact tgtgcttcag
     5281 ggtccccgaa acgtgcatta aattcaatga ctttcggccc ttctttggtt aaaatcgcac
     5341 cgatgtataa taaaccgaag aaatcatgcc cttctgcttg catcgctttg gcaatcggtt
     5401 gcgcgatttt gtcattcgct tcatctaaga cactttgact catatgtggt acaggacagt
     5461 acgcacccat accgcctgtg ttcggccctt tatcttgatc atacgcacgc ttatgatctt
     5521 gcgcaattgt atcgaatgga acagcgtaat caccattgac aaatgtcatg agtgaaaatt
     5581 cttccccttc taaaaattgt tcgaatacga ctttactatt cgcttctgga tataatgttt
     5641 ctaccgcttc acgtgcttgt tcgcgtgttt cagcaatgat gaccccttta cctgctgcga
     5701 gtccatcttt tttcaacaca atcggtaatt cacacgtttc aatgtatgcc actgcttcat
     5761 ctttttggtc gatttctcgg tatgcagcag ttggaatatc atatttggcc atgagacgtt
     5821 tcgcaaatga ctttgatcct tcgatttgag ccgcatcttg gtttggacca aatactttaa
     5881 tgtctaccgc tcttaatgca tcagctaagc catctgtcaa cggctgttca ggtccaatca
     5941 cgacccatgt cacatcatgt gcttgtgcaa atgcgacgat tgcttcatga tctgattctg
     6001 caatctcacc gtgtacttca gccacatggg tcattgcagc attgcctgga atggcataaa
     6061 cttgtgaaac taatggcgat tgatttaatt tgtgtgcgag tatatgttca cgtcccccgc
     6121 caccaacgac taatacgtgc atattcgata tcctccttat taatgtttaa agtgacgcat
     6181 gcctgttgtc accatagcaa taccatagcg attcgccata tcaatagact cttgatcttt
     6241 aatcgagcca cctggttgaa taattgcttt aatacctgct tttgctgctg tttcgacagt
     6301 gtcacccatt gggaagaaac catctgatgc taagacgaca ttgtcattta tttcaatcgc
     6361 acggtcaatc gcaattttag ctgagcctac acgattcatt tggcctgcac cgataccgac
     6421 tgtctgcttg tcatttgcaa ggacaatcgc attacttttc actgatttca caactttcca
     6481 tcctaataat aatgcgtccc attgttcctt cgtcggtttc acatctgtca caactgtcat
     6541 gtcagcttgt gctacatcaa aacggtcttt atcttgaact aaataaccgc ctgaaaccga
     6601 tacaaattct gttgcatctg cttcttcagt catttcaatt tcaagtaaac gaatattttt
     6661 cttctgttgt aaaatattta aagcagcttg ttcgaatttt ggcgcaataa cgacttctaa
     6721 gaaaatcgca tgtaagtctt ctgcgagttc agctgtgact ggacggttta atgcgacgat
     6781 accaccgaaa atagattgac tgtccgcttc atacgcatgt gtgtacgctg catgaatgtt
     6841 ttcgcctgta ccgacaccac aaggattcat atgttttacc gcgaccgctg caggttgttc
     6901 gaattgtttc actaaactta gtgccgcatc cgcatcttta atattgttgt agctcagttg
     6961 tttaccgtgt aactgtgtcg cgcccgcaat cgtatttttc gctgtagatg tacgaataaa
     7021 ctgtgcagat tgttgtgggt tttcaccgta acgtaattgt tcaagttgat gcccaaaaaa
     7081 ttgtgtaatc gcttgatcat attcaaatgt atgttggaat actttaatca ttaatgactt
     7141 gcggaatgct tcatctaaag aaccgttttg aatgcgttga atgacttcat catagtctgt
     7201 tgggtcaaca attgttgtga catgtttgaa gtttttcgca gctgcacgta acatcgttgg
     7261 accaccgata tcgatgtttt caatcgcgtc catttcagtg acgtctggat ttttcaccgt
     7321 ttctttaaat ggatataaat tcacaacgac catatcgatt aaatcaatat tttgtccttt
     7381 taattgctca agatgttctg gtttgtcacg atctgctaaa ataccgccat gcacagctgg
     7441 gtgtaatgtt ttcacacgac catccataat ttcttcaaat tgtgtcagtt cagaaaccga
     7501 tgtcaccttg acacccgctt cgtcaattgc acggaaagtc ccgcctgttg aatacaactc
     7561 ataacctgct tcaacgaggg attgtgcaaa tggaacaata ccagttttgt ctgaaacact
     7621 taaaattgct tttttcataa ttgatgatat ctccttatcg aataatcttc ttaatgactg
     7681 ttgggtacaa ttcatactct aatgatttaa tacgttcttc taatgattgt tgtgtatcgt
     7741 cttcataaat tggacatgtg cgctgttcaa tcatctgacc tgtatccata cctgcatcga
     7801 cgtagtgtac tgttgaacct gtttccttat ccccactgtt taacgcttgt ccgactgcat
     7861 ttttaccttt atatttcggc aataatgaag ggtgaatgtt caaaatgcgt ccttcatatg
     7921 ctgataataa tgtttcatcg attaaacgca tatagcctgc taatacaatc cactctacat
     7981 cttcctgacg caaccaattt aatacagccg cttcataagc tactttatca tcgaacgtgc
     8041 gtggttcgaa tgcatggaca ggaatgccat gttgttgagc aagctgaaca cacgctgctt
     8101 caggtttgtc agtgtacaat gctgtgactt cgatatgcgc gagttcaccc gatttgacac
     8161 gtttcataat gttatcgaaa tttgtgccgg aaccagatgc aaagattgca attttaacca
     8221 ctattttgcc tccgttaagc gaatggcact gtcttcttca gcaatatgac cgattgtgta
     8281 tgcgtccaca ttcgcatttt ttaagatttc atgaactgct acttcatctt caggtgcaac
     8341 gatgagtgta aaaccaatcc ccatgttgaa gatatggtac atttcgtctg tatcgatgtt
     8401 accttgtgct tgtaaccaat tgaaaatagc cggtgttgga aacgatgctg tgttcacaac
     8461 agccgttttg ccttctggta aagctctcgg aatattttcg taaaaaccac cacctgttat
     8521 atgtgtcatc gctttaattt gaacatcttt tttcaccgta agcacaggtg acacgtataa
     8581 agcagttggt gttaagagca tgtctaagaa gctttgttca ccttcaaatg tatcgttcac
     8641 atcaatacct gattccgcga caagacgacg gactaaactg taaccgtttg aatgaatgcc
     8701 gtttgaggca aggccgatga tgacgtcacc cttttctact tttgagccgt caatgtattc
     8761 ttctttttca actgcaccga cagcaaagcc cgcaacatcg tattcacctt catgatacat
     8821 ttcacccatt tcagctgttt cgccaccgat taaagctgtg tttgtttcaa cacaaccatc
     8881 actaatgcct tttacgattt gttcgataat ttccggtacc actttatgtg tcgcaatata
     8941 gtctaaaaag tatagcggct ctgcgccagt cgttaaaatg tcatttacac acattgcaac
     9001 ggcgtcaata ccgattgtgt catgtttgtc atagtcgata gcgagcttta actttgtacc
     9061 gacaccatct gttcctgata cgagtacggg ggctttcata ttgagttgtg ataaatcaaa
     9121 tgttgcacca aatcctccta agccgccaag tacttcttta cgcatcgttc gttcaacgtg
     9181 gcttgacatt cgttttaccg cttcatagcc agcttcgata tcgacaccag cctttttata
     9241 tgattcagcc attgattaca ctcctcttct tttcatttcc ttaacttctg gtagttcatg
     9301 atccacaatt tcaattggat attcacccgt aaaacaagcg ttacattcgc ctttagaatc
     9361 atgggcttta aacacttcat gcatgccttc aacagataaa tacgtcaatg tatctgcgcc
     9421 aatcatttcg cgaatttctt ctacagtatg ttgagccgcc atcaattctg catgagtaga
     9481 cacgtcaata ccgtagtaac acggatcttt taatgggggt gaagaaatgc ccatatgcac
     9541 ttctttcgca cctgcagatt tcaatgcttt aacgatatat ttacttgtcg ttccgcgcac
     9601 gatcgagtca tcaatcacga ccacacgttt gccttcaatc acatcacgaa tcggtgaatg
     9661 cttcatacgg acttgtcttt ctctcacaga ctgatctggt gtaataaacg tacgaccgat
     9721 ataacggttt ttcagcaacc cttgttcgtt cggaatccct gtttgttcag aaaagccttt
     9781 cgccgcttgt aatgaagaat cgggaacacc aatcacgata tccgcatcga tgcccatttc
     9841 ttcagctaat ttacgtccaa gtgctttacg gacattgtaa atcgagtgtc tgtgaaattc
     9901 tgaatccgga cgtgcaaagt agacatattc catcgagcac atcttatgac cgatatcttg
     9961 tgtatacatg tcgtagtcca cctcgttctc accagaaaat gtaatcaatt cacctggttc
    10021 gatgtcacgg atgtattctg caccaattgc tgtaaaggca catgtttcac tcgcaacaca
    10081 gtatgcgcca tcgacttgac ctaacatcaa tgggcggacg ccacgattgt cacgtgtcgc
    10141 tgtcagttgt tcttcgttta aaatgacaca actgaatgcc cctttcactt gattcaatgc
    10201 tgctttttgg tttgttttaa tattttccga ttttccttta atcaacagat gagcaagtac
    10261 ttctgagtca ctcgtcgttt ggaaaatgcc gcctgttgat tcaatggcta aacgaatttg
    10321 atgtgcattc gttaagtttc cattgtgtgc caaacctaag tcccctttag aatgtttgaa
    10381 caaaaacggt tgcacgttgg aaatctcgct cgctcctgtg gtcgcataac ggacatgacc
    10441 aatggcgttc ggataacctt gtaatgactc caattgttgt tgtgaaattg cctcagttaa
    10501 caatcccata ccacgcgcac caaaaagttg ttcaccgttc gagcacacaa tccctgcacc
    10561 ttcttgaccg cgatgttgca aactgtgcaa tgccatgtaa gtcaaatagg ctgcatgagg
    10621 atggttccag atgccgaaaa caccgcattc ttcgtttagt ccacggatgt catacatgac
    10681 tcaatagctc cttcccattc acgtttaagt tcagatgtac gacgttcaat tacactgtct
    10741 tgtgcaacga ctttaaagtc atctgtatcc gtcaatgtac cgatacgtgt tgcgccttcg
    10801 atatttaatg tttgacctgc tttcactgca acgatataac gtccttgcgt ttcactaaat
    10861 aattgtgcat ttgttaaatt gacttcagcg tcaataccta ggctgtaatg cgcgctaatt
    10921 ttagcaagtg taatcgcaat acccccttta ccgacagttt gtgtatgtga aatcacacct
    10981 tcacgaatcg caccacgtat tgcttcacct ttcgctgctt cttgtgataa atcgactttt
    11041 tcaacttcat ggttcacatc gctatacaat aatttttcga tttgactccc accatagcta
    11101 tctgtcgttt caccgatgac ataaagtgtg tcacctatag acggttgata tgattttaag
    11161 aagtcgatgt tttcaattaa acctaccatc cctacaacag gtgttgggaa aatagaagat
    11221 gtacgtgttt cattataaag tgaaacgtta cctgatacga caggtgttgc aagtgcttca
    11281 catgcttctg ccatcccacg tgttgagtct gtcaattgtt gataaatgtg ctttttctca
    11341 ggtgaaccat agtttaagca gtccgtcatc gctaatggtt ttgcaccgac agcaattaag
    11401 ttacggtatg cttcggctac gaccattttg ccaccttcat acggatcgtt aaagacataa
    11461 cgtgcttcac catcaatcgt agacgcaatt gctttgtttg taccttctac acggaccaca
    11521 gacgcttgta aacctggttt aataattgta tttgcaccaa cttgttgatc atattggtca
    11581 tataaataat gttttgatgc aatcgttgga tgtgttaata aacgatcaaa aacatcattc
    11641 acgtcaatat catcataacg gttcggtgct gtatcgtgtt gtaacggttc accttcaagg
    11701 atgtatactg gcgcttcatc cgcgagtggt tcgacaggaa tatctgcaaa tacttcacct
    11761 tcataagtga ggacgaagcg gttcgtatcc gtcacttcac caatcactgc actgtctagt
    11821 tcatgatagt caaacaaatc taaaaacttt tgttcagtcc cttttttaac gacaagtaac
    11881 atacgttctt gtgtttcaga caacatcatt tcatatggag aaataccttt ttcacgtact
    11941 gggacttttt cgagctcaag atgaatcccg ctgccccctt tagctgccat ttcagatgat
    12001 gaagatgtta aaccagccgc acccatgtct tgaataccga caagttcgtc ataagtaatc
    12061 gcttctaaag tggcttccat taatttttta ccaacaaatg ggtcaccgat ttgaacagaa
    12121 ggacgtttgc tttcactttc ttcagttagc tcttctgatg caaatgtcgc accatgaata
    12181 ccgtcacgtc ctgttttcaa accaacgtaa atgacagagt taccgacacc tttagctgta
    12241 cctttttgaa tcatatcgtg atcaatgaca ccgacacaca tcgcattgac aagtggattg
    12301 ccgtcataac gttcgtcaaa ttcgatttca cctgcagttg tcggaatacc gatacagtta
    12361 ccgtaaccac caatacctgc aacgacacca cgtaataaac gacggtttgt tttttcagtc
    12421 agttcaccaa aacgtaagct gttcaataag ttaattggac gcgcaccgat agaaacaatg
    12481 tcacgaataa tcccaccgac acctgtcgca gcaccttgat aaggctcaat cgctgaagga
    12541 tggttatgtg attccacttt aaatacaaca gcctgattgt caccaatatc aactacccct
    12601 gcaccttcac caggccccat taaaacatgt tcacctgttg tcgggaattg ttttaaaaat
    12661 ggtttagaat gtttatatga acagtgttca ctccacataa cagaaaaaat acctgtttcc
    12721 gtaaaattag gtgtacgtcc taaaatttca gttacttttt caaattctgc atcgcttaac
    12781 cccatgtcac gatataattt ttcaactttg acttcttctg cagttggctc taaaaattta
    12841 ggcattttgt tccctccagc tattcaccat tgattcaaat aatttcacac cactgtctgt
    12901 accaagaatg gcctctaatg cacgttctgg atgtggcatc atgccgcaaa cattccctgc
    12961 tttgttgacg attccagcaa tatcatcatg tgaaccgttc ggattgtcta tatactttaa
    13021 gatgatttga ttattgtcga tgagttcttg ataaatctct tctgtacaat aataatgacc
    13081 ctcaccatgt gctactgggt aaacaacttc ttcaccttca ctataacctt tcgtaaatgg
    13141 tgtttgatta ttcacaattt taaggtgttc atttcgactc acgaataaat gtgaatcgtt
    13201 gtgtaataac gcacctggta ataaaccaat ttccgttaaa atttggaatc cgttacatac
    13261 gccaagaacg ggctttcctt catcagccaa tcttttcact tctgcaataa tcggtgctac
    13321 acttgccacc gcacctgaac gtaagtagtc accaaatgag aaaccaccag gaatcaatac
    13381 gccatcgtac ccttttaatg atgtttcacg gtaatcgaca taatccgcat cgacacctga
    13441 tttcaatgct gcattataca tatcacggtc gcagttagaa cctgggaatc taaggacagc
    13501 gaacttcata ttattgattc tccttttcat ccaaaacttt gtaactatat tcttcaatca
    13561 ctgtattcgc aaataacttt tcacttaaag ttgtcacaac attgtgtacc gcttcatcag
    13621 ttgcttcatc tactgtcatg tataaaactt taccaacgcg gatatcattg acttgttcat
    13681 aacctaagtc atgtacagcg cgagtcaacg cttgaccttg tgtatctaaa acttgtggtt
    13741 gtaaagtgat atgtaattcg attgttttca tgattaaagt gcctccaatt tatttaagaa
    13801 agtttggtaa gtatcaatta aagatcctgt atcttctcta taaacatctt tgtcaaagtt
    13861 ttcttgtgtt gctttatccc aaatacgaca tgtatccggg gaaatttcat cagcgagcaa
    13921 caattgacct tcatgatcaa cgccgaattc aattttaaaa tcaactaatg ctaagcccat
    13981 ttcatccatt aatttgatca atgcttggtt aatgcgtaat gcctgttctt tcaactgtgc
    14041 aatcattgca tcatccgcaa cccccaacag cttgacatga tcatcagtaa taagcgggtc
    14101 attaaggtcg tcatttttat agaaaaactc tacaaacgga taatcaaaca catgtccttt
    14161 ttcaaatccg agacgtttcg taattgaacc cgctgcaatg ttacgtacaa caacttctaa
    14221 aggaacgatg ttgactgctt taacaagttg ttctgtttct gaaagttgct caacaaaatg
    14281 actctcgata ccttcatttt taatgtattc aaagatgcgc gatgtaattt gattgtttaa
    14341 gcgcccttta cctaccattg catctttttt cgcaccatta ccagctgtga cttcatcttt
    14401 atattcaatt ctcaatacat ccggttgttc tgttgaaaaa acacgttttg ctttaccttc
    14461 atataaaaga ctcatttgta ttcgtctctc ccttcaaatt ttgcgaccag ttgttgttca
    14521 gtctttgaaa catcatcagt tagtattgtt aaatgcccca tcttacgttc aggtttacgt
    14581 gaaactttgc cgtaaagatg aacatgccaa tcaggatgtg caaacaattc tttctccaac
    14641 aaatccaaat ccttacctaa caaattcatc atgattgcag gttttaacaa ttcaatgtgt
    14701 tcaggtaaac gatggcctgt cacagctaag atgtgggtat caaattgcga ataatcacag
    14761 gcttcaattg aataatgtcc tgaattgtgt ggacgtggcg caatttcatt gacgtacaat
    14821 tcattttgtt gatcaataaa aaattccact gtaaacgtcc ctacaaaatg taccgcttgg
    14881 gtaattttgt cgacttcacg acgtgcttct tgttcatgat tcgcccgtgc aggtacaaca
    14941 gttttaaata atacttggtt tcggtgttca ttttcttgta atgggaaata gaccatttgc
    15001 ccttcattac cgattgtgac agttaaagac acttctttcg ctaggtctaa aaattgctcc
    15061 gcgacacatt cttggttggc aatcaattca cgtgcttcat ctaattgtgc ttctgaggtg
    15121 agacggattt gacctttgcc atcataacca ccaaaacgtg ttttcaacat gaacggaaaa
    15181 cctaatgtct gtaccgcttc atctaaatcc gctacagaag tcacttgaac aaatggcacc
    15241 actttcgttc ctgcttgagc aagtgtttgt ttttctgtca aacggtcttg caacagttga
    15301 atggcttgat aactttgtgg cacattatat ttcgaaacta atgtttggag ctgttccgcc
    15361 gcgatatttt caaactcata agtaatgaca tctgatcgtt cacccaatcg ctctaacgct
    15421 ggcatatcat cgtaagctgc gtgtataaat tcatgagcaa cgtaacgaca aggacacgtt
    15481 tcatcaggat cgagcacaac tactttaaat cccatttttt gtgcggattg tgccatcatt
    15541 tttcccaatt gaccgccccc gataatgcca actgtttggc caatttgcaa cttattgaag
    15601 atcatcttgc atcgcctcca ctttctcaac aagcgattgt tcatatactt cgagttttcg
    15661 ttgtacctct tgatcggtca taccaatcat tcttgccgct aaaatgcctg catttttcgc
    15721 ccctgcttga ccaatggctg tcgtcgcaac gggtatccct cctggcattt gtacaattga
    15781 aagtaaagaa tctagccctt ttaaactttt tgactcaatc ggtacaccga tgacagggag
    15841 tgttgtcatc gaagccacca ttcctggtaa atgcgcggct ccccctgctc ctgcaataac
    15901 gacatgatat ccattactgc gcgcatttgt ggcaaaatcg accatcatat gtggcgtacg
    15961 atgtgcagat actacttttt gatcatacgg aatgttaaat tcttctaaca tggcacatgc
    16021 ttctttcatg acattccagt ctgaagaact ccccataatg actgctactt tcacaatgaa
    16081 caccctttca aaagtttgaa atactattct taat
//
LOCUS       DANHOL010000050        15817 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.050, whole genome shotgun sequence.
ACCESSION   DANHOL010000050 DANHOL010000000
VERSION     DANHOL010000050.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 15817)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15817)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15817
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.050"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            40..1440
                     /gene="ftsA"
                     /locus_tag="PTC08_001137"
     CDS             40..1440
                     /gene="ftsA"
                     /locus_tag="PTC08_001137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HDK5682651.1"
                     /translation="MEEHYYVSVDIGSSSVKAIVGEKFHNGINVIGTGQTYTNGIKNG
                     LIDDFDLAKQAIKDTLKKASIASSVDIKEVFLKLPIISTEVFDETNKIEFHQDTEING
                     THIEEVLEGIREKNTEPETEVIDTFPIRFIVDDNNEVSDPKELVARHSLQVDAGVIAI
                     NQSILINMIKCVEACGVDVLDVYSDALNYRSALTATERELGACVIDIGEDLTQIAFYE
                     RGELVDADVVFMAGRHITEDIAQFLNTTYDTAEKIKQQYGHAFYDSASDQDVFTVNQL
                     DSDEPAQFTQKELSDVIEARVEDILIKVFDVLQELGLTKVNGGFVVTGGSANLLGVKE
                     LLLDMVNEKVRIHTPSQMGVRKPEFSSAISTISSSIAFDELLDYVTISNHDNEEIEEE
                     IIESDSKRQEHKSSGFESFFKKKPKKQQSQDTANSEFVDDDTSEEVYEDIDGHEHGEP
                     KQEESKFKKIMKSLFD"
     gene            1470..2642
                     /gene="ftsZ"
                     /locus_tag="PTC08_001138"
     CDS             1470..2642
                     /gene="ftsZ"
                     /locus_tag="PTC08_001138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HDK5682652.1"
                     /translation="MLEFEQGFNHLATLKVIGVGGGGNNAVNRMIDHGMNNVEFIAIN
                     TDGQALNLSKAESKIQIGEKLTRGLGAGANPEIGKKAAEESREQIEDAIQGADMVFVT
                     AGMGGGTGTGAAPVVAKIAKEMGALTVGVVTRPFSFEGRKRQTQAAAGVEAMKAAVDT
                     LIVIPNDRLLDIVDKSTPMMEAFKEADNVLRQGVQGISDLIAVSGEVNLDFADVKTIM
                     SNQGSALMGIGVSSGENRAVEAAKKAISSPLLETSIVGAQGVLMNITGGESLSLFEAQ
                     EAADIVQDAADEDVNMIFGTVINPELQDEIVVTVIATGFEDKPSSQARKQGHSGFGAS
                     ATPTSSKESSFGGGHTGQTSTQDKEVESGRSHTTADDDIPSFIRNREERRSRRTRR"
     gene            2796..3608
                     /gene="pgeF"
                     /locus_tag="PTC08_001139"
     CDS             2796..3608
                     /gene="pgeF"
                     /locus_tag="PTC08_001139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan editing factor PgeF"
                     /protein_id="HDK5682653.1"
                     /translation="MELFTKKGHHLSYQPSLVQGVQIGITTRGDGVSAYPNGAFNMAR
                     YIDDKPENITHHQEVLAQEIGIPRAQWVFPIQTHEANVVEVTQADRGKNIDTLSKDTL
                     YGIDAMFTYDEDTMLTMCYADCVPIYFYSPSHHFIALAHAGWRGTVATIVHRVLDQFP
                     YDYNDLYVVIGPATSDSYEINDDIFKQFQQLPIDSAAYIETRDEDRHGIDLKYANQLL
                     LEQYGVPRDHIYRTEYATSEDLDLFFSYRLEKGKTGRMLAFISQSLNESGDD"
     gene            3609..4283
                     /locus_tag="PTC08_001140"
     CDS             3609..4283
                     /locus_tag="PTC08_001140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggS family pyridoxal phosphate-dependent
                     enzyme"
                     /protein_id="HDK5682654.1"
                     /translation="MSVKTNLAEIEHTITENVTFREDPTRPHVIAVTKYVTINRAKEA
                     YEAGIRHFGENRIEGFLEKKAALPDDVHMHFIGSLQSRKVKEVINDIDYLHALDRQSL
                     AKEISKRAEHEIKCFVQVNVSGEASKHGIALEEVIPFIEKLVDYDHIRVVGLMTMAPY
                     TDNEAELEDIFEKLKNKRDEVQSLNLTYAPCTELSMGMSNDYHIATKKGATFVRIGTR
                     LVGKEE"
     gene            4289..4849
                     /locus_tag="PTC08_001141"
     CDS             4289..4849
                     /locus_tag="PTC08_001141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002446233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein SepF"
                     /protein_id="HDK5682655.1"
                     /translation="MAIKDLFNNFFTIEEEEDEDFIQEEERRREREQQQVQQQANKQQ
                     SERPRAVQSVPKRQASRSKSSQNDKQLQVAQKQEQGNVVNMSPTQDTYQNGSSKMCLF
                     EPRVFSDTQDIADELKNRRATLVNLQRIDQVSAKRIIDFLSGTVYAIGGDIQRVGADI
                     FLCTPDNVEVAGSITDHIESMENHYK"
     gene            4861..5154
                     /locus_tag="PTC08_001142"
     CDS             4861..5154
                     /locus_tag="PTC08_001142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggT family protein"
                     /protein_id="HDK5682656.1"
                     /translation="MNIELLTSILEFLLFIVKAYTFGMIIYIFMSWLPGARESAVGRW
                     MSKIYEPFLEPFRRIIPPLGLVDISPIVAFLVLNLFERGLVAIFKLILHQIYS"
     gene            complement(5385..5789)
                     /gene="rbsD"
                     /locus_tag="PTC08_001143"
     CDS             complement(5385..5789)
                     /gene="rbsD"
                     /locus_tag="PTC08_001143"
                     /EC_number="5.4.99.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-ribose pyranase"
                     /protein_id="HDK5682657.1"
                     /translation="MKKAALLNSHVSQVIATMGHFDLLTVNDAGMPIPNDDRRIDLAV
                     TKALPLFIDVLATVLEELKIQKIYLAEEIKTHNPTQLKQIKALIDQDVEIAFIPHSEM
                     KSYLSHPLNKGNIRTGEITPFSNIILESDVTF"
     gene            complement(5808..6689)
                     /locus_tag="PTC08_001144"
     CDS             complement(5808..6689)
                     /locus_tag="PTC08_001144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GRP family sugar transporter"
                     /protein_id="HDK5682658.1"
                     /translation="MNMVALLIGLGPLIGWGLFPTIASKFGGKPVNQIIGATVGTLIF
                     AIAFFIFSGRQFPTGLDLFFALLSGAGWCFGQIMTFKAFEYIGSSRAMPITTAFQLLG
                     ASLWGVFALGNWPGVTNKLIGFAALIVILIGAWMTVWSEDAQETKSSNLRKAVLILLI
                     GEIGYWLYSAAPQATDIGGKVAFLPQAIGMVLSAIIYGLMTMKKDNPFNKKVTWLQII
                     SGFFFAFAALTYLISAQPDMNGLATGFILSQTSVVLATLTGIYFLNQRKTSKEMFITI
                     IGLILILAAATVTVFIK"
     gene            7046..7873
                     /locus_tag="PTC08_001145"
     CDS             7046..7873
                     /locus_tag="PTC08_001145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HDK5682659.1"
                     /translation="MRFYKVLVPMIESNLENMTTTEKEVAQFFLKQVTVEDLSSEMFS
                     HQLHVSKATLTRFAKKCGFTGFREFLFHYREMMREKEEILAYKDLIQKVLFDYEEMLR
                     KNYSILNESQLEHIKEMINQAERVYLYGKGSSALALKEMKMRFMRLGIICEVIEDNDM
                     LVWNNLLVDASCLVIGASISGKTSSVLHALKRAKAQGAQTVLMTTRNFNAHEFGCDEI
                     LLLAAAKHLSYGNVISPQFPILLMTDCLFSYYLEDPQRGMYYDQTIIDKEAQSHHHD"
     gene            7970..8893
                     /locus_tag="PTC08_001146"
     CDS             7970..8893
                     /locus_tag="PTC08_001146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrodipicolinate synthase family protein"
                     /protein_id="HDK5682660.1"
                     /translation="MRDLNRYQGIIPAFYACYDENGEVSQERVRQQVQYLIDKGVKGI
                     YVNGSSGECIYLTTEERKQIIEAVMDVAKGKITVINHVACNNTKESAILAAHSEQLGV
                     DAIAAIPPIYFKLPEYSIEKYWNTISDAAPNTDFVIYNIPQLAGVALTNQLYAKMRKN
                     PRVIGVKNSSMPVQDIQTFAAAAGEDYIVFNGPDEQFVGGRMMGAQAGIGGTYGVMPD
                     LFLKLDSLFKTRDITQAQALQFAINDIISKLVSGYGNMYAVAKEVLRINENVDLGSVR
                     APLEPLTEEDKIIAQQAADMIVATRQQFLAS"
     gene            8921..10462
                     /locus_tag="PTC08_001147"
     CDS             8921..10462
                     /locus_tag="PTC08_001147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:solute symporter"
                     /protein_id="HDK5682661.1"
                     /translation="MSTTGFTLVDLFVLIVYLLIVLVAGLYFSKKEMSGKEFFKGDGS
                     VPWYVTSVSIFATMLSPISFLGLAGNSYAGSWILWFAQLGMLIAIPLAIKYVLPIFAR
                     MDIDTAYDYLERRFEAKSLRVISALLFIVYQLGRMSIIMYLPSIGLAKLTGIDINILI
                     ILMGVIAIVYSYTGGLKSVLWTDFIQGVILSGGALIALFVLIKDIDGGMGAIAEQLAH
                     GKFIAPTEKWFDPNILSGSIFLIVFGSGLTIFSSYASSQDLVQRFTTTQNIKKLNKML
                     FTNGVLSLGVATVFYLIGTGLYVFYQLQNVSEATKAIPRDQIFMYFIAYQLPVGVTGI
                     ILAAIYAAAQSTISTGLNSVATSWTLDIQEVVAKQMSDSVRTRIAQIVSLLVGIFSIV
                     VAIVMAHSDIKSAYEWFNGFMGLVLGLLGGIFILGFVTKKANKQGAYAALIVATIVMV
                     CIKYVLPPEAVNYWAYSFISISVSLVVGYVVSLLTGNKTSAPQFTTIHDIPEILADKS
                     WEKRH"
     gene            10481..10930
                     /locus_tag="PTC08_001148"
     CDS             10481..10930
                     /locus_tag="PTC08_001148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhcH/YjgK/YiaL family protein"
                     /protein_id="HDK5682662.1"
                     /translation="MIIAERKDFKRYITINPHFEKVNDFLEHTDLSQLEDGRIEIDGD
                     HVFANCMTYIADGVAGEQFENHKKYLDIHLVISNTEKMAVSTPQDASSKTEFDVENDF
                     ELFNSKKYQIVELNETNLLVTFEEDLHQPKVRVNDQTVKKLVIKVLN"
     gene            11286..12056
                     /locus_tag="PTC08_001149"
     CDS             11286..12056
                     /locus_tag="PTC08_001149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding protein"
                     /protein_id="HDK5682663.1"
                     /translation="MDIYQHFRPEEHEQIDYLLDKVRQAETQYAPVLTYFLDPRGQYM
                     LEVIAGSFNDLHVSFDGGRDAERCRAVIAPSYYEPSRDDFELALIEIDYPTKFVTLQH
                     QHVLGTLMSLGIEREQVGDIIVAERIQFVLTKQLESYIMLELTRIKGATIKLHVIPFE
                     DMIQSEEYWETYEATVSATRLDVVLKEMIRKSRTIAKTHIQRKRVKVNHTLIEAADFQ
                     LEAGDLLSIQGYGRAKITEIGNRTKKDKLRITYQTLFK"
     gene            12080..12679
                     /locus_tag="PTC08_001150"
     CDS             12080..12679
                     /locus_tag="PTC08_001150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DivIVA domain-containing protein"
                     /protein_id="HDK5682664.1"
                     /translation="MAFTPSEIKNKAFTRIKNGFEPTEVEQYLEQLSHEIERLKEDKK
                     QLEKVLEERDAHIQSFKEVEKSVGEAIVSAQRAADETKAAAQKERDAIIQKAQAEASQ
                     IVNDGIEKARRLSFQTEDMKRQSKVFRSRFRMLVEAQLDLLKSDDWEYLLNYDLDSQQ
                     VTEENFQHLNEQDITAQEKRQAEQANQQPNETSSSETDK"
     gene            12880..15627
                     /gene="ileS"
                     /locus_tag="PTC08_001151"
     CDS             12880..15627
                     /gene="ileS"
                     /locus_tag="PTC08_001151"
                     /EC_number="6.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
                     /protein_id="HDK5682665.1"
                     /translation="MEYKDTLLMPKTKFPMRGGLPTKEPQIQQEWKEKDLYRKMLEKN
                     EGQPSFILHDGPPYANGNLHMGHALNKILKDFINRYKTMQGFYTPYVPGWDTHGLPIE
                     QALTKKGVKRKEMTTAEFRDKCQAFAMEQIDIQKKDFLRLGVNGDFDNPYITLKPEYE
                     AAQIRLFGEMADKGLIYKGKKPVYWSPSSESSLAEAEIEYHDKRSASIYVAFDVKDSK
                     GIVADDAKFIIWTTTPWTLPSNVAITVHPELTYVQMNVDGTRYIIAEALVDAVAEQLG
                     WDKEAVVREKDFKGSELEYIEAQHPFIDRISLIINGEHVTTDAGTGCVHTAPGHGEDD
                     FIVGQKYGLEVISPLDDKGVFTAEGGPFEGMFYDKANQAVTELLTEKGALLKLDFITH
                     SYPHDWRTKKPVIFRATPQWFASISKVRQDILDAIEDTKFKVDWGKTRIYNMIRDRGE
                     WVISRQRVWGVPLPVFYAENGDIIMTKETVYHVADLFEQHGSNIWFERDAKDLLPEGF
                     THPGSPNGEFTKEQDIMDVWFDSGSSHRGVLETRPELSFPADMYLEGSDQYRGWFNSS
                     ITTSVATRGRSPYKMLLSHGFVMDGEGKKMSKSLGNVIVPDTIVKQKGADIARLWVSS
                     VDYLADVRISDEILNQVADVYRKIRNTLRFLLGNINDYNPATDRIAEADLLEVDRYIL
                     NRLREFTAGTLDHYESFDYLNIYQEVQNFINVELSNFYLDYGKDILYIEEKNAHKRRS
                     MQTVLFEILVNMTKLLAPIIPHTAEEVWSHIEQVDEESVHLTNMPAKEEVDQALLDKW
                     NTFMALRDDVNRALEAARNEKVIGKSLEAKVKIGNSSSFDTLAFLEGFNDLHQLFIVS
                     QVELVEDTKGEAYQHGTIEIAKADGEKCARCWNYSESLGSVGELDDLCPRCQEVVKTL
                     V"
BASE COUNT         5249 a         2635 c         3325 g         4608 t
ORIGIN      
        1 agcttaatta tgtaaagaaa tgtcaggagg tgcctatcta tggaagagca ttattatgtt
       61 agtgtagata tcggctcatc aagcgtgaaa gcgattgttg gtgaaaaatt tcataacgga
      121 attaatgtga taggtacagg gcagacctat acaaatggaa tcaagaatgg tttgattgat
      181 gatttcgacc ttgctaaaca ggccattaaa gatacgctaa agaaagcttc aatcgcttca
      241 agtgtggata ttaaagaagt atttttaaag ctaccaatca ttagtactga agtttttgat
      301 gaaacaaata aaatcgaatt tcatcaagat acagaaatta acggcacaca tattgaagag
      361 gtgcttgaag gaattcgtga aaaaaatacg gaacctgaaa cggaagtcat tgatacattc
      421 ccgattcgct ttatcgtgga tgacaacaat gaagtttcag atccaaaaga gcttgtcgcg
      481 cgtcactctt tacaagtgga tgcgggcgtc attgcgatta atcaatcgat tttaattaat
      541 atgattaaat gcgtagaagc ttgtggtgtg gatgtattag acgtttattc tgatgcattg
      601 aattaccgtt ccgcattaac tgcaactgaa agagaacttg gtgcatgtgt gattgatatt
      661 ggtgaagatt taactcaaat tgcgttttat gaacgcggag agctcgtcga tgcggatgtc
      721 gttttcatgg cagggcgtca catcacagaa gatattgctc aatttttaaa tactacatat
      781 gatacagcag aaaagattaa gcaacaatac ggacatgcat tttatgattc agcttcagac
      841 caagatgtgt ttactgtaaa ccaacttgac tctgatgaac ctgcacaatt tacacaaaaa
      901 gagctgagcg atgtcattga agcacgtgtt gaagacattc tcattaaagt attcgatgtt
      961 ttacaagagt taggtttaac gaaagtcaat ggtggatttg tagtgacagg tggttctgct
     1021 aacttacttg gtgtgaaaga attacttctc gatatggtga atgaaaaagt acgcattcat
     1081 acaccttcac aaatgggagt aagaaaacca gaattttctt cagcaatttc cacaatttct
     1141 agtagtattg ctttcgatga gctattggat tatgttacaa ttagtaatca tgataatgaa
     1201 gaaattgaag aagaaatcat tgaaagcgat tcaaaacgac aagaacataa atcaagtggt
     1261 tttgagtcat tcttcaagaa aaaaccaaaa aaacaacaat cacaagacac ggcaaattct
     1321 gaatttgtcg acgatgatac ttcggaagag gtatatgaag acattgatgg acatgaacac
     1381 ggagaaccta aacaagaaga aagtaagttc aagaagatta tgaaatcact gtttgattga
     1441 ttggctacaa agattaggag gaaatttaaa tgttagaatt tgaacaagga tttaatcatt
     1501 tagcgacact taaagtcatc ggtgtcggtg gtggcggtaa taatgctgtt aaccgaatga
     1561 ttgaccacgg tatgaacaat gttgaattta ttgcaattaa cacagatgga caagctttaa
     1621 acttatctaa agcagaatct aaaatccaaa ttggtgaaaa gttaacacgt ggattaggtg
     1681 caggtgcgaa ccctgaaatt ggtaagaaag ctgcagaaga atcacgtgaa caaattgaag
     1741 atgcgatcca aggtgcagac atggtattcg taactgctgg tatgggtggc ggtactggta
     1801 caggtgcagc acctgttgta gccaaaatcg ctaaagagat gggcgcttta acagtgggtg
     1861 ttgtgacacg tccattcagt ttcgaaggtc gtaaacgtca aacacaagct gctgcgggtg
     1921 ttgaagcaat gaaagctgct gttgatacat taattgtcat tcctaatgat cgcttgttag
     1981 atattgtaga caaatctaca ccaatgatgg aagcatttaa agaagctgac aacgtattac
     2041 gtcaaggtgt acaaggtatt tctgatttaa ttgcagtatc tggtgaagtg aacctcgact
     2101 ttgctgacgt taaaacaatc atgtcaaacc aaggttctgc attaatgggt atcggtgtat
     2161 catctggtga aaaccgtgca gttgaagcgg ctaaaaaagc catttcttct cctttacttg
     2221 aaacatcaat cgtaggtgca caaggtgtgt taatgaacat tactggtggc gaatcattat
     2281 ctttattcga agcacaagaa gctgctgaca tcgtacaaga cgctgcagat gaagatgtga
     2341 acatgatctt tggtacagtc attaacccag aattacaaga tgaaattgtt gttactgtga
     2401 tcgcaacagg ttttgaagat aagccttcat cacaagcccg taaacaaggt cactctggct
     2461 tcggtgcaag tgctacacca acaagctcaa aagaatctag cttcggtggt gggcacactg
     2521 gtcaaacttc aacacaagat aaagaagttg aaagtggacg tagccatacg acagcggacg
     2581 acgatattcc aagctttatt cgtaacagag aagaaagacg ctcaagaaga acacgtcgtt
     2641 aatcgtgtga tatgttgaaa tataaagtac acctatcaac aggataaagt gtgatattta
     2701 tcttacatag gatgtcaaga actgctagga caattgtcac ttcatcaatg tcctagcagt
     2761 ttttaataga taaaagtaaa aaaggaggga tgaagatgga attatttacg aaaaagggac
     2821 atcatttatc ttaccagccg agtttagtac aaggtgttca aattggcatc acgacaagag
     2881 gtgatggcgt gagtgcatat ccaaatggag cattcaacat ggcaagatat attgatgata
     2941 agccggaaaa tattacccat catcaggaag tattggcaca agaaatcggt attccgagag
     3001 cgcaatgggt ctttccaata cagacacacg aagcaaatgt cgtagaagtg actcaagcgg
     3061 atcgtggtaa aaatattgat acactttcga aagacacact ttatggtatc gatgcgatgt
     3121 tcacatatga tgaggatacg atgttgacga tgtgttatgc agactgtgtg ccgatttact
     3181 tttatagtcc ttctcatcac tttattgctt tggcacatgc aggttggcgg ggcactgtcg
     3241 caactattgt acatcgtgta ttagaccaat ttccttatga ttacaacgac ttatacgtgg
     3301 ttattggtcc agcaacatct gatagttatg aaattaatga tgatattttc aaacaatttc
     3361 agcaactgcc gattgacagt gcagcttata ttgaaacgcg tgatgaagac cgtcatggaa
     3421 ttgatttgaa atatgcgaac caactattgt tagaacaata cggcgtgcca cgtgaccata
     3481 tttatcgtac agaatatgca acttccgaag acttggattt atttttctcg tatcgtttag
     3541 aaaaaggaaa aacgggaaga atgttagcat ttatttctca atcattgaat gaaagtggag
     3601 atgattaaat gtcagtgaag acaaacttag cagaaataga gcacaccata actgaaaatg
     3661 tgacttttcg tgaggaccca acaagacctc acgtgattgc tgtcacaaaa tatgttacaa
     3721 taaaccgagc gaaagaagct tatgaagcag gcattcgtca ttttggtgag aaccgcatcg
     3781 aaggtttttt agagaagaaa gcagctttac cagacgatgt ccacatgcat tttattggtt
     3841 ctttgcagtc acgtaaagtg aaagaagtca ttaatgatat tgactattta catgcattag
     3901 accgtcaaag tttggccaaa gaaattagta aacgcgcaga acatgaaatc aaatgttttg
     3961 tccaagtgaa cgtttctggt gaagcatcta aacatggcat tgctttagaa gaggttatcc
     4021 ccttcattga aaagttagtg gactatgacc atattcgtgt tgtaggtctg atgacgatgg
     4081 caccatacac agataatgaa gctgaattag aagacatttt tgaaaaactt aaaaataaac
     4141 gcgatgaagt ccaatcattg aaccttacat atgcaccttg tacagagctt tcgatgggta
     4201 tgagtaatga ttatcatatt gccacgaaaa agggtgccac atttgttaga attggaacgc
     4261 gtcttgtagg aaaagaggag tgaatccatt ggctataaaa gatttgttca acaatttttt
     4321 cacaattgaa gaagaggaag atgaagattt cattcaagaa gaagaacgcc gtcgtgaacg
     4381 tgagcaacag caagtgcaac aacaagcgaa caaacaacaa tctgagcgtc caagagcagt
     4441 ccaatccgta cccaaacgtc aagcgtcacg ttccaaatct tctcaaaatg ataaacagtt
     4501 gcaagttgcc caaaaacaag agcaagggaa tgtggtgaat atgagcccaa cacaagatac
     4561 ttatcaaaat gggagttcta aaatgtgttt atttgaacca cgtgtatttt ctgatacaca
     4621 agacattgca gatgaattga aaaatcgtcg tgccacactt gtgaatcttc aacgtattga
     4681 tcaagtttct gcaaaacgta ttatcgactt tttaagtggt accgtttatg cgattggtgg
     4741 cgatattcaa cgtgttggtg cagatatttt cttatgtaca ccagacaatg tcgaagttgc
     4801 gggtagtatt accgatcata tcgaatctat ggaaaatcat tataaataag ggagtatgct
     4861 atgaacatcg agttattaac atccatcctt gaatttctac tgtttattgt taaagcttac
     4921 acatttggaa tgattattta catttttatg tcgtggttac caggtgcaag agaaagcgca
     4981 gttggaagat ggatgtcaaa aatttatgag ccatttttag aaccatttcg acgtatcatt
     5041 ccgccattag gtctagttga tatttcaccg attgtagcct ttttagtgct caatttgttt
     5101 gaacgtggac ttgtagccat ttttaaactt attttgcatc aaatttattc ataaaataca
     5161 gtataatcaa aagactgttc agacgtgatg acgacgtgtt tgaacagtct attttttatt
     5221 tgtgtggtga tgttaagaaa taggcatcaa gtttaatacg atataatcag cagtgatcta
     5281 atgcttaagc gcataaaatc aacagcaact gtccccctca acaaaaaggc ccctccataa
     5341 cgtaatcatc acgaacgcgt tggaagggct tattttagat tgatttaaaa tgtcacgtca
     5401 gattctaaaa taatattaga aaacggagtg atttcaccag tgcgaatatt acctttattc
     5461 aatgggtgac ttaaatatga tttcatttct gagtgtggaa taaacgcaat ctcgacatct
     5521 tgatcaatca atgctttaat ttgtttcaat tgtgtcgggt tatgtgtttt aatttcttcg
     5581 gcgagataaa ttttttggat ttttaattct tctaacactg ttgctaatac atcgataaag
     5641 agcggtaatg cttttgttac agctaaatcg attcttctgt catcattagg aattggcatc
     5701 cctgcatcat tgacggtcaa caagtcgaag tgacccattg ttgcaataac ttgagaaacg
     5761 tggctgttaa gtaaagctgc ttttttcatt ctcttcacct ctggatatta tttaataaat
     5821 acagtgactg ttgcggctgc taaaatcaaa attaaaccaa tgattgtgat aaacatttct
     5881 tttgaagttt tacgctgatt caagaaataa atacctgtta acgtagctaa aacaactgaa
     5941 gtttgagata agatgaaacc tgttgctaaa ccattcatat caggttgtgc tgagattaaa
     6001 tatgtcaatg ctgcgaaagc aaagaagaaa ccagaaatga tttgcaacca tgtaactttc
     6061 ttgttgaatg gattgtcttt tttcattgtc attaaaccat aaatgatggc cgacaatacc
     6121 attccaatgg cttgtggtaa aaatgctact ttaccaccaa tgtctgtcgc ttgtggtgca
     6181 gcagagtaaa gccaatatcc aatttcaccg attaatagga taaggactgc ttttctcaag
     6241 ttactacttt ttgtttcttg tgcatcttca ctccaaactg tcatccatgc accaattaaa
     6301 atcacgatta atgcggcaaa accaatcagt ttatttgtaa cacctggcca gttacctaat
     6361 gcgaatacac cccaaagtga tgcaccgagt aattggaaag ctgttgtgat aggcattgca
     6421 cgagaagacc cgatatattc aaatgctttg aaagtcataa tttgaccaaa acaccagccg
     6481 gctcctgaga gtaaggcgaa aaacaaatct agtcctgttg ggaattgacg ccctgaaaat
     6541 ataaaaaagg caattgcgaa aatcagtgtc ccaacagtag cgccgataat ctgattgact
     6601 ggtttacctc caaattttga tgcgattgta ggaaaaaggc cccaaccaat gagcggtcct
     6661 aagccaatta ataatgcgac catgttcatt acttacactc ctctatttct attaaacatt
     6721 ttgtctttca ttaacaagtc cacgttttaa aatataccat ttctatatga atatataaac
     6781 taacatttac taaaattcaa aactattatt tgggaaattt aaggattgaa acaaacttgt
     6841 cacacatgtc ggctaagaag agggatttag gtaatagtgt cagttaacga attaaaaata
     6901 aagcgaaagc caatcagaaa gttatttcca aatgatatta tatttattct gaaactcgtt
     6961 tctaaaataa tagtattgct tgaaaagtag aacgaaacgg catacaatta aatttgtaaa
     7021 cgcttgcaac gatgaggtgt gaacaatgag attttataag gtactcgttc ctatgattga
     7081 atcgaatctt gaaaatatga caacaacaga aaaagaggtc gcacaatttt ttctgaaaca
     7141 agtaactgtt gaggatttat cgtctgaaat gtttagccac caactgcacg tgtcaaaagc
     7201 aacattaaca cggtttgcga aaaagtgtgg tttcacgggt tttagagaat ttttgtttca
     7261 ttatagagaa atgatgcgcg aaaaagagga aattctcgca tacaaagatt taatacaaaa
     7321 agttttgttt gattatgaag agatgcttcg taaaaattat tcgattctca atgaaagtca
     7381 gttagaacat attaaagaga tgattaatca agctgaacgt gtatatcttt atggaaaggg
     7441 aagttcggcg ctggcattaa aagaaatgaa aatgagattt atgagactcg gcattatttg
     7501 tgaagtgatt gaagataatg acatgcttgt ctggaataat ttattagtag atgcgtcatg
     7561 tctcgtgatt ggtgcttcaa tttcaggcaa aacaagttcc gtcctacatg cattaaaacg
     7621 tgccaaagca caaggtgcac aaactgtttt gatgacgacc cgaaatttta atgcacatga
     7681 attcggatgt gatgaaattt tgttgttagc agcagctaaa catttatcgt atggcaatgt
     7741 catttcaccg caatttccga tattactcat gacagattgt ttgttttctt attatttgga
     7801 ggatcctcaa agggggatgt attacgatca aacgattata gataaagaag cgcaatctca
     7861 tcatcatgat tagggcgtgt tataccgttt tataagtgtt ttacaataaa atattgatat
     7921 aaatatttta ataaaattca ctaaaatcat taagaagagg agaatggata tgagagattt
     7981 aaatcgatat caaggcatta ttccggcatt ttacgcatgt tacgacgaaa acggggaagt
     8041 cagtcaagaa cgcgtacgcc aacaagtgca atatttaatt gataaaggtg taaaagggat
     8101 ttacgtgaat ggttcttctg gggaatgtat ttatttaaca actgaagagc gtaaacaaat
     8161 tattgaggca gtgatggatg tcgcgaaagg taaaatcacc gtgattaatc atgtcgcgtg
     8221 taacaacacc aaagagagtg cgattttagc agcgcattct gaacaactcg gtgtcgatgc
     8281 gattgcggcg attccaccga tttactttaa attaccagaa tattcaatcg aaaagtattg
     8341 gaatacgatt agtgatgcgg caccgaatac agattttgtt atttacaata ttccgcaatt
     8401 agcgggtgtc gcgttgacga atcagttgta tgcaaagatg cgtaaaaacc ctcgtgtgat
     8461 tggtgtgaaa aactcttcta tgcctgtaca agacattcaa acgtttgcag cggcagcggg
     8521 tgaggactat atcgtattta acggtccaga tgaacaattt gtcggtggtc gaatgatggg
     8581 cgcgcaagct ggcattggcg gtacatatgg tgtgatgcct gatttatttt tgaaattaga
     8641 ttcattattt aagacacgtg atattacaca agcacaagca cttcagtttg cgattaatga
     8701 tatcatttca aaattagtgt ctggctatgg caatatgtac gcagtcgcaa aagaagtgtt
     8761 aagaattaat gaaaatgtgg atttaggctc agtgcgtgcg ccgttagaac cattgacaga
     8821 ggaagataaa attattgcac aacaagcagc tgacatgatt gtcgcgacaa gacaacaatt
     8881 tcttgcatca tagtgaatgc atcataaagg agcgttgatt atgagtacaa ctggatttac
     8941 attagttgac ttatttgtgt tgattgttta cttactcatt gtgttagtag cggggctcta
     9001 cttctcgaaa aaagaaatgt cagggaaaga attctttaaa ggggatggct cggtcccgtg
     9061 gtatgtgacg tcagtatcta tttttgcaac gatgttaagt ccgatttcgt ttttagggct
     9121 tgctgggaac tcttatgcag gcagttggat tttatggttt gcgcagttag ggatgctcat
     9181 tgcgattcca ttagccatta aatatgtact gccaattttc gcgcgtatgg acattgatac
     9241 ggcttacgat tatctcgaac gccgttttga agcgaaatcg ttacgtgtca tttcagcgtt
     9301 actgttcatc gtgtatcaac tcgggcgtat gtccattatt atgtatttac cttcaatcgg
     9361 tttggcaaaa ttaacaggta ttgacattaa tattttaatc atcttaatgg gtgtcatcgc
     9421 aattgtttac tcgtatacag gtggtttgaa atctgtactt tggacggact ttattcaagg
     9481 cgtcatctta tctggtgggg cattaatcgc attgttcgta ttgattaaag atatcgatgg
     9541 cggtatgggc gcgattgcag aacaattggc tcacgggaag tttattgcac cgacagaaaa
     9601 atggtttgat ccaaacatat tatcaggctc gattttctta atcgtgtttg gttctggttt
     9661 aacgattttc tcatcttatg cttcttctca agatttagta caacgtttta cgacaacaca
     9721 aaatattaaa aagttaaata aaatgttgtt cacaaacggg gtattgtcat taggtgtagc
     9781 gacagtattc tatttaattg gaacaggttt atatgtgttt taccaacttc aaaatgtgag
     9841 tgaagcaacg aaagccattc cacgtgacca aatttttatg tattttatcg cttaccagct
     9901 accagttggg gtgacaggta tcattttagc agcgatctat gccgcagcac agtcgacgat
     9961 ttcgacaggt ttaaactcag ttgcgacgtc atggacctta gatattcaag aagttgttgc
    10021 gaaacaaatg tcggatagcg tgcgtacacg aattgcacaa atcgtctcat tattggtcgg
    10081 tattttctca attgtcgtgg cgatcgtgat ggcacattct gatattaaat ctgcgtacga
    10141 atggttcaac ggctttatgg gactggtgtt aggtttactt ggtgggattt tcattttagg
    10201 atttgtcact aaaaaagcga ataaacaagg ggcttatgcg gcgctaattg ttgcgacaat
    10261 tgtgatggtg tgcattaaat acgtgttgcc tccagaagcg gtaaactact gggcgtattc
    10321 gttcatttca atcagtgtgt ctttagtggt aggttatgtt gtgtcattat taactggaaa
    10381 caaaacatca gcaccacaat ttacaacgat tcatgacatt cctgaaattc ttgcagataa
    10441 gagttgggaa aaacgtcatt aattaaggag gatgtttgta atgattattg ctgaaagaaa
    10501 agattttaaa agatatatta cgattaatcc acattttgaa aaagtaaatg actttttaga
    10561 acatacggat ttgtcacagt tagaagatgg tcggattgaa attgacggag atcacgtatt
    10621 tgcaaactgc atgacttata ttgcagatgg cgttgcaggc gagcaatttg aaaaccataa
    10681 aaaatattta gatattcatc ttgtcatcag taacactgaa aaaatggcgg tgagcacacc
    10741 tcaagatgca tcttcaaaaa cagaattcga tgtagaaaat gattttgaat tgttcaatag
    10801 taaaaaatat caaattgtag aattgaatga aacgaacctt cttgtgactt ttgaagaaga
    10861 tttacatcaa cctaaagtgc gcgtcaatga tcaaactgtg aagaaacttg tgattaaagt
    10921 tttgaactaa gaggaggaaa atgtgcaaat gtgcgttaaa ctaggcggtg cgtatcattt
    10981 ttatctttgc gttcatcttc aatatctaga aagtaaaagg cttgttgaat tatgagcctt
    11041 ttattttttc tagtgcgccc ggcatgggta acaccttgac ggtaaaagtc cgttacaggc
    11101 ttggtagtag gaactgttag cgaaagacaa gtcatgtaac ttatattaaa atgtttgtga
    11161 attagctatt ctcctttctt ctatacttca attaatgata aactgtatag gtaaaacttg
    11221 tacattcttt attaaagtga atgacaatcg aaagttagga ttaatgagga aaaggagttc
    11281 cacctttgga tatttatcaa cattttagac ctgaagagca tgaacaaatt gattatttat
    11341 tagataaagt gcgccaggct gaaacacaat atgccccagt actgacttat tttttagatc
    11401 ctcgtggaca atatatgtta gaagtgatag caggcagttt caacgatttg cacgtttcat
    11461 ttgatggggg acgtgatgcg gagaggtgtc gggcggttat tgcgccaagc tattatgaac
    11521 cgtcgcggga tgactttgaa ttggctttaa ttgaaattga ttatccgaca aagtttgtga
    11581 cattgcaaca tcaacatgtg ttaggaacat tgatgtcttt aggtatagaa cgtgaacaag
    11641 tcggtgatat tatcgtagct gaacgcatcc aatttgtttt gacaaagcaa ttagaatcat
    11701 atattatgtt agaattaaca cgtattaaag gggcaacaat taaacttcat gtgattccgt
    11761 ttgaagatat gatacaatca gaagagtatt gggagacgta tgaagcaaca gtgagcgcaa
    11821 caagactcga tgtcgtatta aaggaaatga ttcggaagtc acgtacaatt gccaagacac
    11881 acattcagcg aaaacgtgtc aaagtgaacc atacgcttat tgaggcagcg gactttcaac
    11941 ttgaagcagg cgatttgttg tccatacaag gatatggccg tgcaaagatt acagaaattg
    12001 gtaatcgtac gaagaaagat aaattaagaa tcacctatca aactttattt aaatagtgta
    12061 tgatggagga gggcaagaaa tggcttttac acctagcgag attaaaaaca aagcgttcac
    12121 acgtattaaa aacggcttcg aacctacaga agtagaacaa tatttagaac agttaagcca
    12181 tgaaatcgaa cgtttaaaag aggataaaaa acaattagaa aaagtgttag aagaacgtga
    12241 tgcacacatt caatcattca aagaggttga aaaatcagtc ggtgaagcga ttgtcagtgc
    12301 ccaacgcgct gccgatgaaa caaaagcagc agcacaaaaa gagcgagatg caatcattca
    12361 aaaagcacaa gcagaagcaa gtcaaattgt gaatgatggt atagaaaagg cgcgtcgttt
    12421 atctttccaa accgaagata tgaagcgtca atctaaagtg ttccgttcac gttttagaat
    12481 gcttgtagaa gcacagcttg acttgttgaa aagtgatgac tgggaatact tgttgaacta
    12541 tgatttagat tcacaacaag tgacagaaga aaacttccaa catttaaatg aacaagacat
    12601 tacagcacaa gagaagcgac aagctgaaca agcgaaccaa caaccaaacg aaacatcatc
    12661 aagcgaaaca gacaagtaaa agagataatc atccatacag cgagttagga agtggtgaga
    12721 gcctaacaga tgaccttatt ttatatcact gattcgccat gtcatattaa aatcaatgag
    12781 agaactctaa gctgagttaa gcagggtggt accgcggcat gtccgtccct gaatatctga
    12841 gcttagagtt ctttttcagt taaaggagtg tagtttaaaa tggaatacaa agatacgtta
    12901 ctcatgccaa aaacaaaatt cccaatgcgc ggaggacttc caacaaagga accacaaata
    12961 caacaagagt ggaaagagaa agatttatac cgcaaaatgt tagaaaaaaa tgaaggacaa
    13021 ccgtcattta ttttgcatga tggtccgcca tacgcaaacg gtaacttaca tatgggacat
    13081 gcgttgaata aaattttgaa agactttatc aaccgctaca aaacgatgca aggattttat
    13141 acaccttatg ttccgggttg ggatacacac ggtttaccga ttgagcaagc gttaacgaaa
    13201 aaaggcgtta aacgtaaaga aatgacaact gcagaatttc gtgataaatg tcaagctttt
    13261 gcgatggaac aaatcgatat tcagaaaaaa gacttcttac gtttaggggt taacggcgat
    13321 tttgacaacc catacattac gttaaaacca gaatacgaag cggcacaaat tcgcttattt
    13381 ggtgaaatgg ctgacaaagg tttaatatat aaagggaaaa agccggttta ctggtcacct
    13441 tcaagtgaat cgtcattagc agaagcggaa atcgaatacc acgacaaacg ttcagcttct
    13501 atttatgtcg catttgacgt gaaagacagt aaaggtatcg ttgcggatga tgcgaagttt
    13561 atcatttgga caacaacacc ttggacatta ccgtcaaacg tagccattac agtgcatccc
    13621 gaattgacat atgttcaaat gaatgtggac ggtacacgtt acattatcgc cgaagcatta
    13681 gttgatgcag ttgctgaaca attaggttgg gataaagaag ctgttgttcg cgaaaaagat
    13741 ttcaaaggtt cagaattaga atatatcgaa gcacaacatc catttattga tcgtatttca
    13801 ttaatcatca atggtgagca tgtcacaaca gatgctggta caggctgtgt gcatacagcg
    13861 cctggacacg gtgaagatga ctttattgta ggtcaaaaat acggtttaga agtcattagc
    13921 ccattagatg ataaaggggt tttcactgct gaaggtggcc catttgaagg tatgttttac
    13981 gataaagcca accaagctgt tacagaattg ttaactgaaa aaggtgcatt actcaaatta
    14041 gactttatta cacatagtta cccacatgac tggcgtacga aaaaaccagt gattttcaga
    14101 gcgacaccac aatggtttgc gtcgatttct aaagtgcgcc aagacatttt agatgcgatt
    14161 gaagatacaa agtttaaagt cgactggggt aaaacacgta tttacaacat gattcgtgac
    14221 cgtggcgaat gggtcatctc tcgtcaacgt gtctggggtg tgccattgcc agtattctat
    14281 gctgaaaacg gtgacatcat tatgacgaaa gaaacggttt atcacgtagc agatttattc
    14341 gaacaacacg gctctaacat ttggttcgaa cgtgacgcga aagacttatt accagaaggc
    14401 tttacacatc cgggtagccc taacggtgaa tttacaaaag aacaagatat tatggacgta
    14461 tggttcgact ctggttcatc acatcgcggt gtccttgaaa cacgtccaga gttaagtttc
    14521 ccagcagata tgtatcttga aggcagtgac caatatcgtg gttggttcaa ctcttcaatt
    14581 acaacatccg ttgcgacgcg cggccgttca ccatacaaaa tgttattgtc acacggtttc
    14641 gtaatggacg gggaaggtaa gaaaatgagt aaatcattag gtaacgtgat cgtgcctgat
    14701 acgattgtga aacaaaaagg tgccgacatt gcacgtttat gggtgagctc agtggactac
    14761 cttgctgacg tacgtatctc agacgaaatt ttaaaccaag ttgctgacgt ataccgtaaa
    14821 atccgtaata ctttacgttt cttattaggt aacatcaacg actacaaccc agcaacagac
    14881 cgaattgctg aagcggattt attagaagtg gaccgctata tcttaaatcg cttacgtgaa
    14941 tttacagcag gtacattaga tcattacgaa tcattcgatt atttaaatat ttaccaagag
    15001 gttcaaaact ttatcaacgt tgaattaagt aacttctatt tagattatgg taaagatatt
    15061 ctttatattg aagaaaaaaa tgcgcataaa cgtcgtagta tgcaaacagt attgttcgaa
    15121 attttagtga atatgactaa attacttgcg ccaatcattc cgcataccgc agaagaagtt
    15181 tggtcacata tcgaacaagt ggacgaagaa agtgttcatt taacaaatat gccggctaaa
    15241 gaagaagtgg accaagcgtt attagataaa tggaacacat tcatggcttt acgtgatgat
    15301 gtgaaccgtg cattagaagc ggcaagaaat gaaaaagtta tcggtaaatc tttagaagct
    15361 aaagtgaaaa tcggcaacag ctcttcattt gatacgcttg catttttaga aggttttaat
    15421 gatttacatc aattgttcat cgtgtctcaa gttgaattag tagaagatac aaaaggtgaa
    15481 gcatatcaac acggtacaat cgaaatcgca aaagctgatg gagagaaatg tgcacgttgt
    15541 tggaattaca gcgaatcatt aggtagtgtg ggtgaattag atgatttatg cccacgctgt
    15601 caagaagtcg taaaaacgtt agtataatcg aatcaatgaa atattaaaga aggcaatgtt
    15661 ggtactggct aagtgctaac attgtctttt ttgtttgtgt gaaacataca taactttgag
    15721 ttacaaatta ctccatttaa atcaatcttt tgtaaacggt ccaacactgt atcactgaca
    15781 accctaggat gtatttcaaa tgtagttatc atgaaat
//
LOCUS       DANHOL010000051        15669 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.051, whole genome shotgun sequence.
ACCESSION   DANHOL010000051 DANHOL010000000
VERSION     DANHOL010000051.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 15669)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15669)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15669
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.051"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            408..1616
                     /gene="coaBC"
                     /locus_tag="PTC08_001152"
     CDS             408..1616
                     /gene="coaBC"
                     /locus_tag="PTC08_001152"
                     /EC_number="4.1.1.36"
                     /EC_number="6.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate--cysteine ligase CoaBC"
                     /protein_id="HDK5682666.1"
                     /translation="MMKNILLAVTGGIAAYKAIDLTSKLTQGGYDVRVMLTEHAQQFV
                     TPLSFQAISRNAVYTNTFLEENPAEIQHIALGDWADVIVVAPATANIISKLSHGIADD
                     MVTTTLLATTTPKFMAPAMNVHMFENPRIQANIQTLIDDGYHFIEPGEGFLACGYVAK
                     GRMAEPLEIKAVIDRQGQKNAEKIQSAYFRDKKVLVTAGPTIETIDPVRFVSNRASGK
                     MGYAIAEALQKLGAEVTLVTGPTSIEAPRHVEVVQVTTAEDMFQAVRQRFKQQDIIFK
                     TAAVSDYTPVDPLPHKMKKQNGDVTVTFKRTQDILKYLGEHKTTQKLVGFAAETQNME
                     SYAQDKLARKNADVIIANNVGDTSIGFSSDNNEVSLYFKDGTFETLQKGPKKKLAFQI
                     LSILESRWDV"
     gene            1613..4021
                     /gene="priA"
                     /locus_tag="PTC08_001153"
     CDS             1613..4021
                     /gene="priA"
                     /locus_tag="PTC08_001153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HDK5682667.1"
                     /translation="MIAQVIVDVASKSVDKRFDYAIPADLENIVQPGVRVIVPFGPRK
                     IQGYVMRCVPDEEAEYDLEKLRPILEVKDIQPELTTELVQLSEWYSRYFLSKRISILE
                     AMLPSAIKAKYSKAFKLKEDADLPDEVVAYFNNEGLYYYKDAQQDENIEQLMPYLKEG
                     YIEAVTILSQNTTKKKRRAVRVVSTEMAEAYLETAQKKQKQYEVLVFLLDERHRDVLL
                     QELLEMAFSTSAINTLEKQGIIEKYDAIVERNPYEGRVFEKEQKRELTPEQQVAYDTL
                     LHSVRQQQAETFLLHGVTGSGKTEVYLQIIEDVLTQGKEAMMLVPEIALTPQMVLRFK
                     RRFGDEVAVLHSALSNGERYDEWQKIRDGRARVSVGARSSVFAPFKNLGMIIIDEEHE
                     STYKQEDYPRYHAKDIAEWRSRYHQCPLVLGSATPSLESYARAEKGVYTLLSMPSRVN
                     QQPLPDVEILDMREELANGNRSMFSARLVEAIEQRLARKEQVVLFLNRRGYASFMLCR
                     DCGHVPQCPNCDISLTYHKSSDQLKCHYCGYQEQAPFQCPNCESEHIRQMGTGTQRVE
                     ELLQQQFPDARTIRMDVDTTTKKGSHEKLLKQFGEGNGDILLGTQMIAKGLDFPNITL
                     VGVLNADTMLNLPDFRSSERTFQILTQVAGRAGRHEKKGEVIIQTYNPDHYAIKDVQQ
                     NDYLNFYQKEMQYRKLGQYPPYYYLINFTITHEKTKEVLQAATHIHQILLQHLTDKAF
                     ILGPSPSVIPRINNEYRFQILVKYKSEPSLIHALTYLDDYYHEMFVKNKLGLKIDINP
                     YMMM"
     gene            4278..4763
                     /locus_tag="PTC08_001154"
     CDS             4278..4763
                     /locus_tag="PTC08_001154"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HDK5682668.1"
                     /translation="MIRKIKTHMHPILRKKAAPVTDFDAHLKDLIQDLEDTLYDAEGQ
                     ALAAPQIGVSERVAIVDMEQDGLLQLINPEVIAQSDETATELEGCLSVPGRFGEVTRS
                     RMITVRSYDLNGNEVEMTAYDDIARMILHVIDNLNGILFVDMMDREISNAELEAYLED
                     E"
     gene            4756..5688
                     /locus_tag="PTC08_001155"
     CDS             4756..5688
                     /locus_tag="PTC08_001155"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020363823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HDK5682669.1"
                     /translation="MSKIIFMGTPDFSTAILEMLIDTEEVIAVVTQPDRPVGRKRVLT
                     PPPVKKVAVAHDIPVYQPEKLSGSAELETLLQTECDLIVTAAFGQLLPESLLEHPKFG
                     AVNVHASLLPKYRGGAPIHQAIIDGEAETGVTIMYMVKKLDAGDIISQQAIPIEDKDN
                     VGTMHDKLSRLGTELLKETLPSIINGTNDRTPQDEALVSFASNIQREDERIDWTQDAR
                     TIFNHIRGLSPWPVAYTTFEDKNMKLYEAQFVKGQSGRPGEIIDVTKKHIIVGTGSDD
                     AIALTEIQLAGKKRMSVAQFLSGFQTSLVGKELI"
     gene            5689..6990
                     /gene="rsmB"
                     /locus_tag="PTC08_001156"
     CDS             5689..6990
                     /gene="rsmB"
                     /locus_tag="PTC08_001156"
                     /EC_number="2.1.1.176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(967)-C(5))-methyltransferase
                     RsmB"
                     /protein_id="HDK5682670.1"
                     /translation="MVTVRELSLMTIEAVLKDGAYSNLKMNEMLQTYPLNPADRGLYT
                     ELVYGTIKRKLTLDYYLKPFVKTKIKGWVRRLLWMSLYQFLYLDKVPTHALINEAVNI
                     AKKRGGAQTGNTVNAILRQMTSQPLPDITAIKKQPERLSIQYSIPTWIIKHWLTHFGA
                     DTTEAIAANLLLPGTQTVRVNRTQITVDEAIEQLRAEGFEVQSDTHIDVCLHVSGHGV
                     MTSELFQKGLISIQDKSSMFVAEYMELQPGDAVLDSCSAPGGKACHMAEILNGQGTVL
                     ATDVHAHKIQLIDHNIRKLHLTGIRAMQHDATQPYDQQFDKVLLDAPCSGLGVLRHKP
                     EIKYVITPQDVKGLVDLQLRIIDNVSKHLKAGGTMVYSTCTIEQLENDNVIYTFLKSH
                     PDFEFDPIEDPRTHEPVKTLQLLPQDMHADGFFITRVRKKG"
     gene            6996..8090
                     /gene="rlmN"
                     /locus_tag="PTC08_001157"
     CDS             6996..8090
                     /gene="rlmN"
                     /locus_tag="PTC08_001157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002435140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2503)-C(2))-methyltransferase
                     RlmN"
                     /protein_id="HDK5682671.1"
                     /translation="MITAEKKKKNKFLPDFEKQSIYSLRFDELQGWLKENGQQSFRAK
                     QIYEWLYDKRVDSFEEMTNLSKALRQLLADHFTITTLATVVRQESRDGTIKFLFELQD
                     GYTIETVLMRHDYGNSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKA
                     LDETDERVSSIVIMGIGEPFENYDEMMDFLKIVNDDHSLNIGARHITVSTSGIVPRIY
                     DFADESLQINFAVSLHAANNEIRSKLMPINRAYDVDKLMEAIQYYQEKTKRRITFEYG
                     LFGGVNDQLEHARELAKLIKPLNCHVNLIPVNHVPERNYVKTPKDDIFKFEKELKKLG
                     INATIRREQGADIDAACGQLRAKERQAETR"
     gene            8097..8840
                     /locus_tag="PTC08_001158"
     CDS             8097..8840
                     /locus_tag="PTC08_001158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000888494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Stp1/IreP family PP2C-type Ser/Thr phosphatase"
                     /protein_id="HDK5682672.1"
                     /translation="MLNAEFFSVAGDFRENNEDAGGVFYNKTEQQFLVLCDGMGGHQA
                     GEVASQFVVDALQERFEAENYIEPEQAEAWLKHQLQIVNRDLYDQAQQNPEYHGMGTT
                     CVCALVFDHHIVVANVGDSRAYLTNGRTMDQITIDHTFVNQLVMLGEITEEEAFVHPR
                     RHIITKVMGTNRFVTPDIFTKRTQFYQYLILNSDGLTDYVKPYQLHELLNEGKTIQEI
                     GDDMLAVAEEQEAKDNVSFILAEIAGEPV"
     gene            8837..10843
                     /gene="pknB"
                     /locus_tag="PTC08_001159"
     CDS             8837..10843
                     /gene="pknB"
                     /locus_tag="PTC08_001159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Stk1 family PASTA domain-containing Ser/Thr
                     kinase"
                     /protein_id="HDK5682673.1"
                     /translation="MIGRLIDDRYELKQILGGGGMSNVYVAMDTILNRQVAVKLIHIP
                     PNEKQATIQRFESEVQNTTILTHPNIVSVLDVGEEVDFFFLVMEYIEGPTLADYIKAN
                     GPLKPEKALYFIEQILSGIRHAHERGIVHRDIKPQNVMIDRNQTLKIVDFGIAKALSE
                     TTMTQTNHVVGTVQYLSPEQAKGEKTGERSDIYSIGIVLYEMLTGHPPFSGETAVSIA
                     IKQIQEAVPNVTDTRRDVPQALSNVILKATEKDQSHRYRSVSEMAHDVMSTLDPTRQN
                     EAIYEVDGTATKTVPINKNALKAEQAKQGQAVDETAQIPIVTPEKQPQGQPKPKPQPA
                     YYSPPPKRSGRKKWIFGVILLLLLGSLFIFMGAAMTGDKYSQVPEVLGKSRAQAEKLL
                     KDNKLTVGDVTYDYSDRYSKDQVMTVDPEEGSKVEQESSVDLVISKGQRVEAMPNLVG
                     MTKQDAERRLKELGFTHVTFTTAYTKNNIEKGHIESQSIQPGQNVAVTQDKVEVTESL
                     GKRQVYVGDYTNKDIDDVKAELEEKGLVVKIEKERSDRRVKKHHIINHSPKKTNVEEG
                     DTVSFIVSTGEKEDDEDSDSAVKAYSETVNIPYTGENDKPQKVEVFITDKNDNGQSPA
                     ETFNITRDTPQTMQFVIEKNKSAKYVIKVDGKTVARKTIDFDDF"
     gene            11602..12870
                     /locus_tag="PTC08_001160"
     CDS             11602..12870
                     /locus_tag="PTC08_001160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome P450"
                     /protein_id="HDK5682674.1"
                     /translation="MAKKLPKDTGLDNTLKMINEAYTYVPKRLEKFGTKAFETRALGM
                     KPIVVISGKAAAELFYDNDKISRKGTLPKRIVHTLFGKGAIHTTEGKVHVDRKALFMS
                     LMTEKNLKYLRELTRNYWFMHTERMQNKDEVNVYQEAGLILTKVGFRWAGLRQTDEQA
                     VQNAEDMNTMIDSFSGLGQSLKGYREAKKARARVEQFLQEQIEAVRVGQQYAEPGTAL
                     YEFAHWKDLNDQPMDPHLCAVDLMNIVRPLVAVNRFVSYGVKALIEFDQERKKLQVTN
                     DPNYAYKFAQEVRRIFPFVPFLPGRLKKTVEFDGFKLKKGTLTVLDIFGTTHDPELFE
                     NPYQFNPDRFDNWDGSPFDLIPQGGGDFYTNHRCAGEWMTVIVMEETIQYFANKIDFV
                     APPQDLSVKLSQFPGKVTSGTMIKNVYPRI"
     gene            13052..13927
                     /gene="rsgA"
                     /locus_tag="PTC08_001161"
     CDS             13052..13927
                     /gene="rsgA"
                     /locus_tag="PTC08_001161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011275979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome small subunit-dependent GTPase A"
                     /protein_id="HDK5682675.1"
                     /translation="MKTGRIIKSISGVYRVDVNGEMFDAKPRGLFRKKQITPIVGDIV
                     DIDVETHASGYIQHVHERRNELKRPPVSNIDLLIVVMSAVSPDFSTQLLDRFLVIGHS
                     YGLQPSILITKKDLASKEEQAAIEEVLKYYEKIGYQTQFIGKDDDVAEVFQHWAPGLA
                     VLSGQSGVGKSTLLNRYAPSLALETNEISQSLNRGKHTTRHVELYPREQGHIADTPGF
                     SALDFDHIEKEDLRDYFIDIAELGAYCKFRDCYHINEPRCHVKAMLDAGKLPAFRYDH
                     YVQLYNEISNRKVRY"
     gene            13927..14577
                     /locus_tag="PTC08_001162"
     CDS             13927..14577
                     /locus_tag="PTC08_001162"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HDK5682676.1"
                     /translation="MTKVFPSLLSADFLNLKQELTKLEESGIDALHFDVMDGQFVPNI
                     SIGFPVLEAIRAATDLPIDAHLMIETPNDYVEAFAEKGVNKISVHMEGNPHIHRVVQN
                     IKKHGVEAGVVINPGTPVHALDAIIEEVDFVLVMSVNPGFGGQAFLPAAVDKIKQLDD
                     IRKNRQLDFKIEVDGGINDQTAKQVIEAGADWLVTGSYFFSRADYKEANQRLKGEL"
     gene            14577..15218
                     /locus_tag="PTC08_001163"
     CDS             14577..15218
                     /locus_tag="PTC08_001163"
                     /EC_number="2.7.6.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine diphosphokinase"
                     /protein_id="HDK5682677.1"
                     /translation="MNDKVIGLLCSDRELPEALFDNQRHQTWGGVDRGTMILLQHNIT
                     PIFAVGDFDSISESEREWVQSRIAIEPVPAEKADTDLALAVRTAAEQGYHHIQIFGAT
                     GGRLDHFMGAMELLQHPDFEAVRIQLIDQQNEIEYLTKGQHVLQNDTAYRYVSFMQGV
                     DQVVLSLKGFKYELCEQQLNRGETLTVSNEFDAKQGEVIVHRGGVYVMRSRDK"
     gene            complement(15289..15477)
                     /locus_tag="PTC08_001164"
     CDS             complement(15289..15477)
                     /locus_tag="PTC08_001164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L28"
                     /protein_id="HDK5682678.1"
                     /translation="MGKECFVTGRKASTGNRRSHALNSTKRRWNANLQKVRILVDGKP
                     KKVWVSTRALKSGKVTRV"
BASE COUNT         5143 a         2665 c         3498 g         4363 t
ORIGIN      
        1 taaatgattt ctagggtgtt tataagtgaa tataaaaaac gtactgaacc acaaaaacgt
       61 tgcttaatgt gttatcgtct cactaaccga tattgataca gaaccctgca aaatctttgt
      121 tacatatgag atttctgtac tgcttaaaca tccaatccga attccatcaa atgtatattt
      181 gaatcgaacc aaaatgagtt gagacaagtc catagagcgc gattttataa tgacaatcgt
      241 gtagaattca gaacaataat caatgaagcg tatctgattt aaaatataat aatttaaatc
      301 gctgaaattt ttatgtccga tgctatgatt ctaaaaagca acgtcatatg aaacaaaacg
      361 ttaaatatat tataatgctt ttaagagtga aaaaaacagg agtggaaatg atgaaaaata
      421 ttttgctagc tgtaacaggc ggtatcgctg catataaagc catagattta acaagtaaac
      481 tgacacaagg gggttatgat gtgcgcgtca tgttgacaga gcatgcacaa caattcgtaa
      541 caccattatc atttcaagcg attagtcgta acgcagttta tacgaatacg tttttagaag
      601 agaatccagc tgaaatccaa catattgctt taggagattg ggcggatgtg attgtcgttg
      661 cacccgcgac agcgaacatc atttcaaaat taagtcacgg tattgcggac gatatggtga
      721 cgacgacgtt attagcgacg acgacaccta aatttatggc gcctgcaatg aatgtccata
      781 tgtttgaaaa tccgcgaatt caagctaata ttcaaacact catagacgat ggttatcatt
      841 ttatcgaacc gggagaaggc tttttagcat gtggttacgt agcgaaagga cgtatggcgg
      901 aacctctcga aattaaagca gtcatcgatc gacaaggtca gaaaaatgca gaaaagatac
      961 aatcggcata tttccgtgat aaaaaagtgc ttgttactgc agggccaact atcgaaacga
     1021 ttgaccctgt ccgttttgta tcgaacagag catcagggaa aatgggatac gccatcgcag
     1081 aggcacttca aaaactcggt gcagaggtaa ctctagtaac tggacctacg tcaatcgaag
     1141 caccacgtca tgtcgaagtc gtacaagtga cgacagctga agatatgttt caagcggtaa
     1201 ggcagcgttt caagcaacaa gatattatat tcaaaactgc tgccgtatca gattacacac
     1261 cggttgatcc gttgccacat aaaatgaaaa agcaaaacgg tgatgtgact gtcacgttca
     1321 aacgtacaca agacattttg aaatatttag gtgaacacaa aacgacacaa aaactggtag
     1381 gctttgctgc agaaacacaa aatatggaaa gctacgcaca agacaaactc gcgcgtaaaa
     1441 atgcagatgt cattattgcg aacaatgtgg gcgatacgtc tattggtttt agttcagaca
     1501 acaatgaagt gtcactttat tttaaagacg ggacatttga aacgcttcaa aaaggcccta
     1561 aaaagaaatt ggctttccaa atcttatcaa ttttagaaag tagatgggat gtatgatcgc
     1621 gcaagtcatt gtagacgttg cctcgaaaag tgtagataaa aggtttgatt acgccatacc
     1681 cgctgattta gaaaatatcg ttcagccggg ggttcgtgtc attgtgccat tcggcccgcg
     1741 caaaattcaa gggtacgtca tgcgatgtgt accggatgaa gaagcggaat atgatttgga
     1801 gaaattaaga ccgattttag aagtgaaaga tattcagcca gaactgacga cagaactcgt
     1861 ccaattaagt gaatggtata gccgttattt tttatcgaag cgcatctcta ttcttgaagc
     1921 gatgttgccc agtgcgatta aagcgaaata ttcaaaagca ttcaagttaa aagaggatgc
     1981 ggatttgcct gatgaagtgg tggcgtattt taataatgaa gggctgtact attataaaga
     2041 cgcgcaacaa gatgaaaata ttgaacagct catgccgtat ttgaaagaag gctatattga
     2101 agctgttacg atattatcgc aaaatacgac gaagaaaaag cgacgtgcgg tcagagtggt
     2161 gtctacagaa atggctgaag cgtatttgga aaccgcgcaa aagaaacaaa agcagtatga
     2221 ggtcctcgta tttttactcg atgaacgtca ccgtgatgta ttgttgcaag aattattaga
     2281 aatggcattt tctacttcag ccatcaatac gttagaaaaa caaggtataa tcgaaaaata
     2341 tgatgcgatt gtggaacgaa acccatatga aggacgtgtt tttgagaaag aacaaaaacg
     2401 tgagctcacg ccagaacaac aagtcgcata tgacacttta ctgcattcgg tccgtcaaca
     2461 acaagctgaa acgtttttac tacatggcgt aacgggttcc ggcaaaacag aagtgtatct
     2521 ccaaattatt gaagatgtcc tcacacaagg taaagaggcg atgatgctcg tgccagaaat
     2581 cgctttaaca ccgcaaatgg tattacgatt taaacgacgc tttggtgatg aagtagccgt
     2641 cctacactct gctttgtcga acggcgaacg ttatgatgaa tggcaaaaaa ttcgtgatgg
     2701 ccgtgcacgt gtcagtgttg gcgcgcgttc gagtgtattt gcgccgttta aaaatctcgg
     2761 catgattatt attgatgaag agcacgaatc gacatacaag caagaagatt atccgcgtta
     2821 tcatgcaaaa gatattgcag agtggcgcag tcgatatcat caatgcccac tcgtgttagg
     2881 cagtgcgaca ccaagtttgg aaagttatgc acgcgccgaa aaaggcgttt atacgttatt
     2941 gtcaatgccg tcacgtgtca accaacagcc attacctgat gttgaaattt tagacatgag
     3001 agaagaactg gcaaatggaa atcgttccat gttttcagca cgtctcgttg aagcgatcga
     3061 acaacgactt gcgcgcaaag aacaagtcgt cctctttttg aatcgtcgtg ggtatgcatc
     3121 atttatgttg tgtcgcgact gtggtcatgt gccacaatgt ccgaattgtg atatttcatt
     3181 aacgtatcac aaatcgagtg accaattgaa atgtcactat tgtggttatc aagaacaagc
     3241 accgtttcag tgtccgaact gcgaaagtga acatattcgt caaatgggga cagggacgca
     3301 acgtgtagaa gaattgctgc aacaacaatt ccctgacgcc cgaacgattc gcatggatgt
     3361 tgatacgacg accaaaaaag gcagtcatga aaaattattg aaacagtttg gtgaaggaaa
     3421 cggcgacata ttgttaggca cacagatgat tgcgaaagga ttggattttc cgaatattac
     3481 cctcgttggc gtactgaatg cagatacgat gttgaatttg cctgattttc gctcgagtga
     3541 acggactttt caaattttga cgcaagtcgc aggacgtgca ggacgtcatg agaaaaaagg
     3601 ggaagtgatc attcaaacgt ataatccgga ccattacgcg attaaagacg tacaacaaaa
     3661 tgattatttg aatttttacc aaaaagaaat gcagtatcgt aagttaggac aatatccgcc
     3721 ttactattat ttaattaact ttacaatcac gcatgaaaag acgaaagaag tcctacaagc
     3781 agcaacacat attcatcaaa ttttgttgca acatttaaca gataaagcat tcatattagg
     3841 gccgtcaccg tcagttattc cgcgtattaa caacgagtac cgcttccaaa tattagtgaa
     3901 atacaaaagt gaaccgtcac tcatccatgc attgacgtat ttagatgact attaccacga
     3961 aatgtttgtg aaaaataagt tggggcttaa aatagatatc aatccttata tgatgatgta
     4021 atagattgga ctaagtattc atatgccagt gttttgatac agtgatatgg taatcgaata
     4081 tgattcatgc aacaaaaggg caaatagctt aatgtgatag atttttaatt gatcattgag
     4141 tagtttgtcc ctttttttgc atacgcataa tgatgaatga tgtgtttttt gttatgatgt
     4201 cgatgagaga ctatcgcatt ttaggtgaga ataagctata atataatgat aaattttcgt
     4261 gaggggcgat gaaggatatg atcagaaaaa ttaaaacaca tatgcatccg attttgagga
     4321 aaaaagcagc gcctgtaact gattttgatg cacatttgaa agatctcatt caagatttgg
     4381 aagatacgtt atatgatgca gaaggtcagg cgttagctgc accacaaatt ggtgtgagtg
     4441 agcgtgtcgc aattgtcgac atggagcaag atggtttgtt gcagctgatc aatcctgaag
     4501 tcattgccca atcagatgaa acagcgacgg aacttgaagg gtgcttgagt gtgccagggc
     4561 gttttggtga agtgacgcgc agtcgtatga ttacggttcg aagttacgat ttaaatggca
     4621 atgaagttga aatgacggct tatgatgaca ttgctcggat gattttacat gtcattgata
     4681 atttaaatgg cattttattt gtagatatga tggatcgaga aatttcaaat gcagaattgg
     4741 aggcttattt agaagatgag taaaattatt tttatgggga cacctgattt ttcaaccgca
     4801 attttagaaa tgttaatcga cactgaagag gtgattgcag ttgtcactca acccgacaga
     4861 cccgtaggac gtaaacgggt actcacgcca cctccagtga aaaaggttgc ggttgcacac
     4921 gatattcctg tgtaccaacc tgaaaagtta agtggctcag cagaacttga aacattactt
     4981 caaacggaat gtgacttaat cgtgacagcg gcgtttggtc aattattacc tgaatcatta
     5041 cttgaacatc caaaatttgg cgcggtcaat gtacatgcgt cattattgcc aaaatatcgt
     5101 ggcggtgcac cgattcacca agcgattatt gatggtgaag cagaaacagg tgtgacaatc
     5161 atgtacatgg tgaaaaagtt agatgccggt gatatcattt cacaacaagc gattcctatt
     5221 gaagacaaag acaatgtggg gactatgcat gataagttga gtagacttgg tacggagtta
     5281 ttgaaagaaa cgctcccatc aattataaat gggacgaacg accgtacacc acaagatgaa
     5341 gcgttagtga gctttgcatc caatattcaa cgtgaagatg aacgcataga ttggacacaa
     5401 gatgcacgca cgattttcaa ccatattcgt ggtttatctc catggccagt ggcttacacg
     5461 acatttgaag ataaaaatat gaagctatat gaagcgcaat ttgtaaaagg tcaatctggg
     5521 cgtccgggtg agataatcga tgttacgaaa aaacatatca ttgtcggtac aggttcagac
     5581 gatgcgattg cactgacaga aattcaatta gcgggtaaga aaagaatgtc tgttgcacaa
     5641 tttttaagtg gtttccaaac atctctagtt ggaaaggaac tcatctaaat ggtcacagtt
     5701 cgtgaattaa gtttaatgac aattgaagca gtgttgaaag acggcgctta cagtaattta
     5761 aaaatgaatg agatgttaca gacatatcca ttaaatcctg ctgatcgcgg tttatataca
     5821 gagctcgtgt atgggacaat taagcgcaaa ctgactttag attattattt aaaaccattc
     5881 gtgaaaacaa aaattaaagg ttgggtgcgt cgtttgttat ggatgagtct gtatcaattc
     5941 ctttatttag ataaagtgcc gacgcatgct ttaattaacg aagccgtgaa tatcgcaaag
     6001 aagcgcggtg gtgcacaaac aggcaatacg gtcaatgcga ttttacgtca aatgacatcg
     6061 cagccgttac cagacatcac agcgattaaa aagcaacctg agagactttc aattcagtac
     6121 agcataccaa cttggattat taaacattgg ttaacgcatt tcggagctga tacaactgaa
     6181 gcgattgcgg cgaatttgct tctcccagga acgcaaactg tacgtgtgaa ccgtacgcaa
     6241 atcactgtag atgaagctat cgaacaatta cgcgctgaag gttttgaagt tcaatcagat
     6301 actcatattg acgtttgtct acacgtgtca ggtcatggcg tgatgacgtc tgaactgttt
     6361 caaaaaggtt tgatcagtat ccaggataag agctctatgt ttgtcgctga atatatggaa
     6421 ttacaaccgg gtgacgccgt gttagacagc tgtagtgcac ctggcggtaa agcgtgtcac
     6481 atggctgaaa ttttaaatgg tcaaggaaca gtgctcgcaa cagatgtaca tgcgcataaa
     6541 attcagctca ttgaccataa catccgcaag ttgcatttaa cagggattcg tgcgatgcaa
     6601 catgatgcaa cacaaccata cgaccagcag tttgacaaag ttttactcga tgcgccatgt
     6661 agtgggctag gtgttttgag acataaacca gaaattaaat atgtgataac gccacaagat
     6721 gttaagggat tagtagactt acaattacgc atcattgaca atgtttcaaa gcatcttaaa
     6781 gctgggggaa caatggttta ttcgacatgt accattgaac aactagaaaa cgataatgtg
     6841 atttatactt ttttaaagtc acatcctgat ttcgaatttg atcctataga agaccctcgg
     6901 acacatgaac cagtgaaaac attgcaacta ttgccacaag atatgcatgc agatggcttt
     6961 tttataacga gagtaaggaa gaaagggtag acaatatgat tactgcagaa aagaaaaaga
     7021 agaataaatt tttgccagac tttgaaaaac aatcgattta ttcacttaga tttgatgaat
     7081 tgcaaggttg gttgaaagag aatggccaac aaagtttccg ggctaagcag atttacgaat
     7141 ggctttatga taaacgtgta gattcttttg aagaaatgac aaatttatcg aaagcattac
     7201 gtcaacttct cgcggatcac tttacgataa cgactttggc aacggttgtc cgccaagaaa
     7261 gtcgcgatgg tacaatcaag tttttatttg aattacaaga tgggtatacg attgaaacgg
     7321 tattaatgcg tcatgactac ggaaattctg tatgtgtgac gacacaagtg ggctgtcgta
     7381 ttggctgtac gttttgcgcg tcaacattag gcggactgaa gcgtaatcta gaagcgggtg
     7441 aaatcgtctc acaagtctta actgtgcaaa aagcgttaga tgaaacagac gaacgtgtct
     7501 cttctattgt tattatgggg attggtgaac cgtttgaaaa ctatgatgaa atgatggact
     7561 ttttgaaaat agtgaacgat gatcacagtt taaacattgg tgcgcgtcat attacagttt
     7621 caacatcagg tattgtaccg agaatttatg attttgctga tgaatcactt caaattaact
     7681 ttgcggtgag cttacatgca gcgaataatg aaattcgttc aaaattaatg ccgattaacc
     7741 gagcatacga tgtggataaa ttgatggaag cgattcaata ttatcaagaa aaaacaaagc
     7801 gtcgtattac gtttgaatat ggcttatttg gcggtgtgaa tgatcagctt gagcacgcgc
     7861 gtgaactggc aaaattgatt aaaccattaa attgtcatgt gaatttaatt ccagtgaacc
     7921 acgttccgga gcgtaattat gttaaaacgc ctaaagatga catttttaaa tttgaaaaag
     7981 aattaaaaaa attaggcatt aatgctacaa ttagacgtga acaaggcgca gatatcgacg
     8041 cagcgtgtgg acaacttaga gcaaaggaac gtcaagcaga aacgaggtag aacataatgt
     8101 taaatgcaga atttttttca gtagcagggg attttcgtga aaacaatgaa gatgcaggtg
     8161 gcgtgtttta caataaaaca gaacaacaat ttttagtatt atgtgatggt atgggtggtc
     8221 atcaagcagg tgaagttgca tctcaatttg ttgtagatgc tttacaggaa aggtttgaag
     8281 cggaaaacta tattgagcct gagcaggcag aagcttggtt gaaacatcaa cttcaaatcg
     8341 tcaaccgtga tttatacgat caagcccaac aaaatcctga gtaccatggc atggggacga
     8401 cgtgtgtatg tgcattagta tttgatcatc atattgttgt cgcaaatgta ggcgattcac
     8461 gtgcgtattt aacgaatggt cgaacgatgg accaaattac aattgaccat acatttgtca
     8521 atcagctcgt gatgttaggt gaaattaccg aagaagaagc tttcgtacat ccgagaagac
     8581 acattattac gaaagtgatg ggtacaaatc gttttgtgac acctgatatt ttcactaaac
     8641 gtacgcaatt ttatcaatat ctgattttaa attctgatgg tttaacagat tatgtgaagc
     8701 cgtaccaatt gcatgaactc ttgaatgagg gtaagactat tcaagagatt ggtgatgaca
     8761 tgcttgcagt tgctgaagaa caagaagcaa aagataatgt ttcttttata ctcgctgaaa
     8821 ttgcaggtga acctgtatga ttgggcgttt aatagatgac cgctacgagt tgaagcaaat
     8881 tcttggtggc ggtggcatgt cgaatgttta tgtcgcaatg gatactattt tgaatcgtca
     8941 agtcgctgtg aaactcattc atattccacc gaacgaaaag caagcgacga tccaacgctt
     9001 tgaaagcgaa gttcaaaaca cgacgatact gacacatcca aatattgtca gtgttttaga
     9061 cgtgggtgaa gaagtcgact ttttctttct cgtgatggaa tatattgaag ggcccacctt
     9121 agccgattac attaaagcga acgggccgtt aaagcctgaa aaagcgctct attttatcga
     9181 gcaaatttta agtgggattc gtcatgcaca tgaacgtggc attgtgcatc gtgatattaa
     9241 gccgcaaaac gtcatgattg acaggaatca aacgttaaaa attgtagact ttggtattgc
     9301 gaaagcgctc agtgaaacaa cgatgacgca aacgaatcat gttgttggca ctgtccaata
     9361 cttatcgcct gaacaagcaa aaggtgaaaa aacaggcgaa cgttctgaca tttactcaat
     9421 aggtattgta ttgtatgaaa tgttgacggg gcatccacct tttagtggcg aaacggcagt
     9481 gagtattgca attaaacaaa tacaagaagc tgtgccgaac gtgacagata cgcgaagaga
     9541 tgtgcctcaa gcgttaagta atgttatttt aaaagccaca gaaaaggatc aaagtcaccg
     9601 ttaccgttca gtatcagaaa tggcgcacga tgtcatgtcg actttagatc cgacccgtca
     9661 aaatgaagca atatacgaag tggacggtac agcaacaaaa actgtaccca tcaataaaaa
     9721 tgcgttaaaa gctgagcaag cgaaacaagg tcaagctgtt gatgaaacgg cacaaattcc
     9781 aattgtcacg cctgagaagc aacctcaggg acaacctaag ccgaaaccac aacctgctta
     9841 ttatagtccg ccaccgaagc gctcgggacg caaaaaatgg attttcggtg tgattttatt
     9901 acttttatta ggtagcttgt ttatttttat gggtgcagcg atgactggag ataaatatag
     9961 tcaagtgcct gaagtgctcg gcaaatcgag agctcaagcc gaaaaactat taaaagataa
    10021 taaattgact gtaggtgacg tcacatatga ttacagtgac cgttacagta aagatcaagt
    10081 gatgaccgtc gatccagaag aaggcagtaa ggtggaacaa gaaagcagtg tggaccttgt
    10141 catctcaaaa ggtcaacgtg tggaagccat gccgaacttg gtaggtatga cgaaacaaga
    10201 tgccgaacga agattaaaag aattaggctt cacgcatgtg acatttacaa cggcctatac
    10261 taagaataat attgaaaaag gtcatattga gtcgcaaagt attcagccag gtcaaaacgt
    10321 ggcagtgacg caagataaag ttgaagtcac agaatcactc ggtaaacgtc aagtatatgt
    10381 cggtgattat acgaacaaag acatagatga tgtgaaagca gaattagaag aaaaaggact
    10441 tgtcgttaaa attgaaaaag aacgttcaga ccgccgtgtg aaaaaacatc atattatcaa
    10501 tcactcgcct aaaaagacaa atgtagaaga gggcgatacg gtgagcttta tcgtatctac
    10561 aggtgagaaa gaagatgatg aggacagtga ttcagcggtg aaggcgtaca gtgagacggt
    10621 gaacattcct tatacaggtg aaaatgataa gcctcaaaaa gtagaagttt ttattacaga
    10681 taaaaatgat aatggtcaaa gccctgctga aacgtttaat attacacgag atacgccgca
    10741 aacgatgcaa tttgtgatag agaaaaataa atcggcgaaa tatgtgatta aagtggatgg
    10801 taaaacagtg gcgagaaaga cgattgattt tgatgatttt tagaagatga agtgtagttt
    10861 ttgttaggtt tttagtattt cggtgacatg tgtgttttaa tcctacagat tgctgaacga
    10921 tgcttcgttg ttatattgat ttagccttat tgatgcaatc taaggctcgc gttcctaggg
    10981 gtgggtcctt caactcaatt cggcttgatt atagtgtaca tttggtggta gccgaattgg
    11041 attttgagag cagtacagaa atctcatgtg taacgaagat ttcgtcgtac tgcccccgca
    11101 aggctgacta gacttctcaa aagcgaacgc gttgagaaat cagacagcta ctgcgttaaa
    11161 cagtaactac ttttgaagtt aagtaacatt attttgcctt taacataacc actcaggagt
    11221 cttgccagga ttgttaatca ataaggctat tttgttttta ggaagcatcg ttctagcaat
    11281 ctgttttttg tatagagaga catagattgc gttgtgctcg gtaaaaataa atttatcatc
    11341 tttcgccact attatgtgtg ggtgagatat tggagattgt tgacatttaa tagcatatca
    11401 tttatcaact gtgaaaatgg acgtggggtt cgttttgacg gttgtttttt atgttgaaaa
    11461 tggctttctg atatctgtga ttaagaaaac agattaattt gctaagaatg cttttgaaag
    11521 ttgggttttg ggattacatt tcgctgttaa ccacgtataa tgggggagaa gataaaaaat
    11581 tgtttttcgg ggggatttaa agtggcaaag aaattaccaa aagatacggg attagacaat
    11641 acgcttaaaa tgatcaacga agcttatact tatgtaccta agcgtctaga aaagtttgga
    11701 acgaaagctt ttgaaacgcg tgcattaggg atgaaaccta ttgttgtaat cagtggtaaa
    11761 gcagcggcag aactatttta tgacaacgat aagatttcaa gaaaagggac gttgccgaaa
    11821 cgtattgttc atactttatt cggaaaaggt gcgattcata cgacagaagg taaagtgcat
    11881 gtcgaccgta aagcgctttt tatgtctttg atgactgaga aaaatttgaa atatttacgt
    11941 gaattgacac gaaattattg gtttatgcat acagaacgca tgcaaaataa ggatgaagtt
    12001 aacgtctacc aagaagcggg actgatttta acaaaagtcg gttttcgctg ggcaggttta
    12061 agacaaacag atgaacaagc agtgcaaaat gcggaagata tgaatacgat gattgattcg
    12121 tttagcgggc tcggccaatc tttgaaaggg tatcgtgaag cgaaaaaggc gcgtgcacgt
    12181 gttgaacaat ttttacaaga gcaaatcgaa gcggtgcgag tgggtcagca atatgcagaa
    12241 ccaggaacgg ctttatatga gtttgcgcat tggaaagatt tgaatgatca accgatggac
    12301 cctcacttat gtgcagtaga tttaatgaat attgtacgtc cacttgttgc ggtgaatcgc
    12361 tttgtgagct atggtgtgaa agcgttgatt gaatttgatc aagaacgtaa aaagttacaa
    12421 gtgactaacg atccgaatta cgcttataaa ttcgctcaag aagtgcgacg aattttccca
    12481 tttgtgccat ttttaccagg tcgattaaag aaaacggttg aatttgacgg ttttaaactg
    12541 aaaaaaggca cattgacggt attggatatt tttgggacga cacatgaccc tgaattattt
    12601 gaaaatccat atcaatttaa cccagaccgt tttgacaatt gggatggcag tccatttgat
    12661 ttaattccac aaggtggcgg agatttctat acgaatcatc gttgtgcggg tgagtggatg
    12721 acagtgattg tgatggaaga aacgattcaa tattttgcga ataaaattga tttcgtagca
    12781 cctccacaag acttgtctgt gaagttaagt caatttccag gtaaagtgac aagtgggacg
    12841 atgattaaaa atgtatatcc aagaatttaa tttgtgtgta tgaataggct gaaataaagc
    12901 gagatgggac tggggcattg ttttcttagt atgtttttta aatgagatgg catccattaa
    12961 tgtcaaaaat tgttgcaagt attaaatcat atcattgtct ataaggcttt gatataataa
    13021 ttgaggatat taacaaaaaa gaggtgtgaa tttgaaaaca ggtcgaatta ttaaatcaat
    13081 cagcggtgtc tatcgcgttg acgtcaacgg tgaaatgttt gatgcaaaac cacgcggact
    13141 cttcagaaaa aagcaaatta cgcctatcgt tggagatatt gtggatattg atgtggaaac
    13201 acatgcatcg ggttatatcc aacacgtaca tgaacgtcgt aatgaattaa aaaggccgcc
    13261 agtgagcaat atcgatttac tcattgtcgt gatgagtgcg gtgtctcctg atttttcaac
    13321 acaattgtta gatcgctttc tcgtgattgg tcattcatat gggttacaac cgagtatact
    13381 cattacgaaa aaggatcttg catcaaaaga agagcaagca gctattgaag aagttctcaa
    13441 atattacgaa aaaattggtt atcaaacaca gtttattggt aaagatgatg atgtggctga
    13501 agtatttcaa cattgggcac ctggacttgc cgtattgagt ggacaatcag gggtagggaa
    13561 atcgacatta ctcaaccgtt atgcgccgag tcttgcgttg gagacgaatg aaatttcaca
    13621 atcactcaac cgaggcaagc atacgacgcg ccatgtcgaa ctttatccac gcgagcaagg
    13681 tcatatcgcc gacacacctg gctttagtgc gctcgatttt gatcatattg aaaaagaaga
    13741 tttgcgagac tattttatcg atattgccga attaggggca tactgtaaat ttagagattg
    13801 ttatcatatt aatgaaccgc gttgtcatgt caaagcgatg ttagatgcag gaaaattgcc
    13861 agcattccgt tatgaccatt acgtacaatt atataatgaa atatcaaatc gaaaggtaag
    13921 atactaatga caaaagtttt tccttcttta ttatcagctg attttttaaa cttaaaacaa
    13981 gaattaacaa aattagaaga aagtgggatt gatgcattac attttgatgt gatggatggc
    14041 caatttgtac ctaatatttc aattggtttt ccagtgcttg aagcgattcg tgcggcaacg
    14101 gatttaccga ttgatgcaca cttgatgatt gagacgccga atgactatgt cgaagcattt
    14161 gcggaaaaag gtgtgaacaa aatttcagtg cacatggaag gtaatccaca tattcataga
    14221 gtggttcaaa atattaagaa acatggtgtt gaagcgggcg ttgtcatcaa tccagggaca
    14281 cctgtacatg ctttagatgc gatcattgag gaggtggatt tcgtcttagt catgtctgtg
    14341 aatccaggtt ttggcggtca agcattcctt ccagctgccg tagataaaat taaacaatta
    14401 gatgacatac gaaaaaatcg ccaacttgac tttaaaattg aagtcgacgg tggtattaat
    14461 gatcaaacag cgaaacaagt cattgaagca ggtgcagatt ggttagtaac aggttcgtat
    14521 ttctttagcc gagcagacta taaagaagcg aaccaacgtt taaaaggtga actgtaatga
    14581 atgataaagt cattggcttg ctctgtagtg atcgcgaatt gccagaagca ttgttcgaca
    14641 accaacgcca tcaaacatgg gggggcgtag atagagggac gatgatttta ttacaacaca
    14701 atattacgcc aatctttgcg gtaggcgatt ttgattcaat ttctgaaagt gaacgcgaat
    14761 gggtacaatc acgcattgcc attgagcccg taccagccga aaaagccgat acagacctag
    14821 cccttgctgt acgcactgca gcggaacaag ggtatcatca tattcaaatt tttggggcaa
    14881 caggtggacg tttagatcat tttatgggcg ctatggaact cctgcaacac cctgattttg
    14941 aagcggtgcg tattcaactc attgatcaac aaaatgaaat cgaatattta actaaaggtc
    15001 agcatgtatt acaaaatgat acagcttatc gttatgtttc gtttatgcaa ggggtggatc
    15061 aagtcgtact ttcattaaaa ggctttaaat atgaattgtg cgagcagcag ttgaatcgag
    15121 gcgaaacttt aacagtctca aacgaatttg atgcaaaaca aggagaggtc atcgttcatc
    15181 gaggtggcgt ctatgtcatg agaagtcgag ataagtaaaa atgagtatca ataaaaaaac
    15241 aggtctccca cataaagacc tgttttttat ttcgatatat gttgttaatt atacgcgagt
    15301 aactttacct gattttaaag cacgagttga aacccaaact tttttaggtt taccatcaac
    15361 aaggattcta actttttgta agttagcatt ccaacgacgt ttagttgagt ttaacgcgtg
    15421 tgaacgtctg ttacctgttg aagctttacg tcctgttacg aaacattctt tacccatcat
    15481 cgtacctcct ttaagaaata caaatacact tttctactac atactaaggt aatataccac
    15541 attaataatt gacatgcaat aaaaagttag gttatatttt cataaatcac tttttgtgtt
    15601 atgcactttc tgatataatt tgaaactgtg attaactgaa atatgagaaa atgtaatcgt
    15661 gcacatgcg
//
LOCUS       DANHOL010000052        15548 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.052, whole genome shotgun sequence.
ACCESSION   DANHOL010000052 DANHOL010000000
VERSION     DANHOL010000052.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 15548)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15548)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15548
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.052"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            247..1971
                     /locus_tag="PTC08_001165"
     CDS             247..1971
                     /locus_tag="PTC08_001165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDK5682679.1"
                     /translation="MKKTWRYAWVLLLCVTLVLSACGKSSSQTSSNENNKTEKSNAKG
                     GTLNVGLTAPPEGNFQDVFASSTSDSDVVAFFNDGLTESDEHLNIKPKILSWEKSKED
                     DLKYTFKVKKGIKWQDGNPFTINDWIFTLETIADPDYTGPRYSGAAVIKGAEEKHKGK
                     AKTISGLKKIDDYTVELTFKAAKANNLMALWTSSVISEKVFKDIPVKDMAKSDAVRKH
                     PIGIGPFIVKNIVDGESVELVKNKDYWQGEPNIDKVNLRVVEQTAMAQALEKGDIDMA
                     DVTGPIAKEIKDHKAENVKILESPSTSYAIIGFVLNDYDKKEMKIGKERPKYQDKRLR
                     KAMAYAINRKEWIDAFFYGYAKPLYGLIPSEHWSGAKKGEVTEYDYNVEKAKKLLDEA
                     GYKDKDGDGFREDPNGKPFVINLKHYSGSNPTFEPRTAALKGYWEKVGLKTKVEMEEF
                     GKYNNDLENASSDMEVYFRSWQQGSDPDPSDLYKSTALWNESRYNNPKADKLLEEAVD
                     SKIVGDDNDKRRKKYIEWQKLMTDDLPVIPITEFINTTAVSNKVKNYEVSLKGANPMY
                     QWSVEEKK"
     gene            2099..3106
                     /locus_tag="PTC08_001166"
     CDS             2099..3106
                     /locus_tag="PTC08_001166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDK5682680.1"
                     /translation="MKMGQLLEINNLTTTFDIEGQPYAAISNIDLTVNKGEVMGIVGE
                     SGSGKSVLSLSILKLLPEKISNIASGEVIYEGKRIDQYDVEQMNQMRGKEIAMIFQEP
                     MTSLNPVFTIGNQLMEMLMLHLKLSKSEAKAKVISLLKQVGIPRAEKVVDEYPHQLSG
                     GMRQRVMIAMAISCSPQLLIADEPTTALDVTVQAQILDLLKRIQEDTQMSVIFISHDL
                     GVISEICDRVAVMYAGEVVETASVEDIFSQPMHPYTQLLLKAIPRLDVKQEKLETIRG
                     SVPSLDELPKVGCRFANRCPHAMAICTLKDIEPYQFEREHQVKCHLYTQDTALKEANE
                     S"
     gene            3103..4092
                     /locus_tag="PTC08_001167"
     CDS             3103..4092
                     /locus_tag="PTC08_001167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide ABC transporter ATP-binding protein"
                     /protein_id="HDK5682681.1"
                     /translation="MSESYVLEVKNLKQYYPIKAGVFQRKVGEVKAVDNISFKIKKGQ
                     TVGLVGESGCGKSSAGRTILCLQKATEGEILFCGQDLTKLKGKALREARKGFQMVFQD
                     PYASLNPMQMVGDIVGEPIRNYYHKKQRDIEDEVKDLLKRVGLNEADYYKYAHEFSGG
                     QRQRVGIARALALKPRLIIADEPVSALDVSVQSQVLNIMDELQEEMGLSYLFIAHDLS
                     VVKHVSDYICVMYLGHILEQGPADAIYENPQHPYTQSLISAIPDINPTQRKKRILLEG
                     DLPSPSHPPVGCPFHTRCPVAEARCAQQKPQAVEVGKEHYAACVLLEEGEVKL"
     gene            4089..5051
                     /locus_tag="PTC08_001168"
     CDS             4089..5051
                     /locus_tag="PTC08_001168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016426171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDK5682682.1"
                     /translation="MITLIIRRFLLMIPMLLLMSVVIFTIAKLQPGDAFTGNMDPKLG
                     AKYYEEQREKLGLNDPIPMQYMKWGARVLHGELGESIRYKRPVMDLIEERMPNTILLG
                     TVSLIITYILAFPLGIISGRKPYSLYDYSIQLLNYLMLAIPSFVAGVFAIYVFAFQFG
                     IFPYSGSVEIGLEPGTFEYYVSKLYHVILPGTVLGLLSTAGYIQFLRNDIIENARKDY
                     IRTARAKGLSESKIYNKHILRNSIIPIVTFFGGDVLSVFGGAVITESIFSFPGIGKLL
                     IESISGKDYPLMMALLLFFSFLGLLANLISDITYSIVDPRIKSN"
     gene            5063..5956
                     /locus_tag="PTC08_001169"
     CDS             5063..5956
                     /locus_tag="PTC08_001169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDK5682683.1"
                     /translation="MENQQLKKSQSPLQIARKKFMKNKTAMAATIVLGMIVIISFLAP
                     FIAPHDPNVQNLVLIKGDMSLEHWLGTDSGGRDIFSRLLYSGRVSLTFGLFTSIGLML
                     IGIVIGMISGYYGGWVDTVLMRFTEFVMLFPFIPFAVVLNATFSHDIESQYGSAIVLG
                     TVLVLLSWVGIARMVRGKVMQEKENEYFLAAQSIGTPVHKILLKHLLPNILSVIIVQA
                     TLVFAVQIVAEAGLSFLGFGISKEVPTWGNMLTDAQEGDILRSKPWIWMPPALIITVT
                     ILCINFIGEGLKDALNPKSKR"
     gene            6188..7909
                     /locus_tag="PTC08_001170"
     CDS             6188..7909
                     /locus_tag="PTC08_001170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016426168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDK5682684.1"
                     /translation="MKKAYRYLWFLSLIVVVVLSACGKNGNETSNTSNKTGKSDAKGG
                     TLTVGIAEPPEGNFQSIFTGSTGDSNVIDFFNDSLIDVGDDLKIKPKILSWEKDKNDD
                     LKYTFKVKKGIQWQDGNPFTINDWVFTLETLADPDYDGPRYSGVAVIQGAEEKRNGQA
                     DRISGIKKIDDYTAEITFKEHKANNLLELWTSAPISEKVFKDIPVKDMAKSDAVRKNP
                     IGIGPYKVKRIVDGESVELVKNKDYWRGEPNIDNINLRVVEQTSMTQALENGDIDMAT
                     ITAPIAKEIKDSGSENLQLLQAPSTSYAIVGFVLNDYDKKAQKIGKERPKYQDKKLRQ
                     AMAYAINRKEWIDAFYYGYGKPLNGLIPSAHWSGAKEGDVKEYKYDVDKAKQLLDEGG
                     YKDKDGDGFREDPQGKPFVVNLKHYAGSNPTFEPRTAALKGYWEKVGLKTKVEMEEFG
                     KYSSDLEKSSKDMEVYFRTWQQGSDPDPSELYRSTALWNESRYNNPKADKILDEAVDT
                     KVVGDDNDKRKEKYLEWQKIMAEDVPVIPIVELEDVTAVSSRVKNFEVSLKGSNPIYE
                     WSVEDKK"
     gene            8015..9025
                     /locus_tag="PTC08_001171"
     CDS             8015..9025
                     /locus_tag="PTC08_001171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDK5682685.1"
                     /translation="MNESKLLEVKNLSTAFEIEGQQYDAISNIDLEINKGEILGIVGE
                     SGSGKSVLSLSILNLLPEKIASIRSGEVRYKGQRIDNMAHEAFNKVRGNEVAMIFQEP
                     MTSLNPVFTIGNQLMEMIMLHLKLSKSEARAKAIQLLQDVGIPRANKVVDEYPHQLSG
                     GMRQRVMIAMAISCAPHLLIADEPTTALDVTVQAQILALLKRIQTETQMGVIFISHDL
                     GVISELCDRVAVMYAGKIVELAPVEEIFTHPKHPYTQLLLKAIPRLDVQQETLETIKG
                     SVPSLVHLPQQGCRFVNRCPHAMAMCQTQDVSGIQVADAHHVFCHLYQNETQLKGVGQ
                     HD"
     gene            9018..10004
                     /locus_tag="PTC08_001172"
     CDS             9018..10004
                     /locus_tag="PTC08_001172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HDK5682686.1"
                     /translation="MTDYILEVNDLKQYYPIKGGVFQRKIGEVKAVDGISFVIEPGQT
                     VGLVGESGCGKSSAGRTILQLQQAHSGEIKFCGQDITKLRGRALREARKGFQMVFQDP
                     YASLNPMQMVGDIVGEPIRNYYHKKQRDIEDEVKDLLKRVGLNEADYYKYAHEFSGGQ
                     RQRVGIARALALKPKLIIADEPVSALDVSVQSQVLNIMAELQEEFGLSYLFIAHDLSV
                     VKHVSDYICVMYLGHILEQGPAEAIYENPSHPYTKALISAIPEIDPRQRKERILLEGD
                     LPSPSDPPSGCPFHTRCPVAEARCAEVKPPSVEVSANHYAACVLLENGGVAQ"
     gene            10001..10963
                     /locus_tag="PTC08_001173"
     CDS             10001..10963
                     /locus_tag="PTC08_001173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016426171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDK5682687.1"
                     /translation="MTTLIIRRILLMIPMLILMSVVIFTISKLQPGDAFSGNMDPKAG
                     AKYYEQERERLGLNDPLPVQYMKWGERVLHGDFGDSIRYKRPVIDLVKERMPNTILLG
                     VTSLVITYLIAFPLGILSGRKPYSLYDYSIQFLNYLMLAIPSFVAGVFAIYIFAFQLG
                     LFPFSGSVALGVEPGSAAYYISKIYHTILPGTVLGLLSTASYVQFLRNDIIENARKDY
                     IRTARAKGLSESMVYNKHILRNSIIPIVTFFGADVLSVFGGAVITETIFSYPGIGKLL
                     IDAISGKDYPLMMALLLFFSFLGLLANLISDITYSIVDPRIKSN"
     gene            10975..11868
                     /locus_tag="PTC08_001174"
     CDS             10975..11868
                     /locus_tag="PTC08_001174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDK5682688.1"
                     /translation="MDKLKKAKSKSPLTIARKKFLKNKPAMIATVVLGLIAIISFLAP
                     LLAPYDPNLQNLVLIKGGMSAEHWLGTDSGGRDILSRLLYAGRVSLLFGFFTSIGLMT
                     IGVLIGMISGYYGGWVDTVLMRFTEFVMLFPFIPFAVVLNATFSGKIENQYGSAIVLG
                     LVLIALSWVGVARIVRGKVMQEKENEYFLAAQSIGTPVYKILFKHLLPNILSVIIVQA
                     TLVFAVQIVAEAGLSFLGFGISKSVPTWGNMLTDAQEGDILRSKPWIWMPPALIITVT
                     ILCINFIGEGLKDALNPKSRR"
     gene            12186..12443
                     /locus_tag="PTC08_001175"
     CDS             12186..12443
                     /locus_tag="PTC08_001175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682689.1"
                     /translation="MLKKLMLLFFAMVISTTIAETFLIAGTWQYLLMQSLSLAFIIFF
                     IYHFVVFQLQEKRQEKRYQDRQWIVNKEHEDENVKKRLVRK"
     gene            complement(12829..13728)
                     /gene="sdaAA"
                     /locus_tag="PTC08_001176"
     CDS             complement(12829..13728)
                     /gene="sdaAA"
                     /locus_tag="PTC08_001176"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase, iron-sulfur-dependent,
                     subunit alpha"
                     /protein_id="HDK5682690.1"
                     /translation="MFDTMKELIDYATENNTTFAEIMIKHEMETRGMTREAVMDMMQQ
                     NLDTMREAVQKGTTGEGVKSVTGYTGQDAIKIHKYNQHNKALSGYDMMSAVEGAVATN
                     EVNAAMGIICATPTAGSSGTIPGILFKLEQSHDLTNDQMLEFLFSASICGMVIANNAS
                     VAGATGGCQAEVGSASAMAAAAAVQTFGGTPEQAGHALAISISNLLGLVCDPVAGLVE
                     IPCVMRNAIGSGNGLISADLALAGVESRIPVDEVIEAMDKVGRNLPASLRETGLGGLA
                     GTPTGEAIKAKIFGDSKRSEVFS"
     gene            complement(13744..14421)
                     /gene="sdaAB"
                     /locus_tag="PTC08_001177"
     CDS             complement(13744..14421)
                     /gene="sdaAB"
                     /locus_tag="PTC08_001177"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase, iron-sulfur-dependent
                     subunit beta"
                     /protein_id="HDK5682691.1"
                     /translation="MARTKDYQSAFDIIGPVMMGPSSSHTAGAVKIGQAARAVLGDTP
                     EKIVVNYYESFAETHKGHGTDLAIIGGLLGFSTFDSRIKTSTKIARSEGIDFEFIEKS
                     GSSLGEHPNCAVIEIDHGDRHVELNGISIGGGAFKVKSIHVNQMCILMAHTPPILVID
                     GECKIAEVNHLINDLIEHEVDINEEIKTMTKGHCLLALHLNKPIKSELLESIKEKYAF
                     LNFSYID"
     gene            complement(14436..15467)
                     /locus_tag="PTC08_001178"
     CDS             complement(14436..15467)
                     /locus_tag="PTC08_001178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HDK5682692.1"
                     /translation="MDFILGIGTLLVVLLAMTLFLKFAPNGKVSLQALSGAACASFLP
                     EAFLKYAIGGVFHSEYFIKLGEVAGSLSGVAVGILTCLKFGINPVFAVLTGLVLFDFK
                     LLPAFIAAYFVAFGIKALEKYVPEGLDLIVVILLSPAIAYGIASIVSPSVTAVLKQIG
                     TAITAVGDNNPYALALVIGAIVPVVGMTPLSSMVFTSLLGLTGIPMAIGALGCMGSSF
                     VNFMMFRKLRIGNAGKAFAVAVEPLTQIDTIAKYPIQLYGTNAVVGMVNGLFITYMGI
                     VVNQPGMATPIAGPIVALGFNEVVPTVITIVVVAIISIIMSFFIGTFISKKRPTLDIQ
                     VPHVNQQTN"
BASE COUNT         4952 a         2711 c         3345 g         4540 t
ORIGIN      
        1 aaaaataaaa gtcttctcac gtatcttttt tgatgtctcc taccttgtca ttatatctaa
       61 gtgatatacc tcatattgcc agttcgtcct aaaaaagcaa agtattccga taacaaaaat
      121 aaaaacctca agttaaatta taattttaaa taaaataagg ttcagttgta aatttagttg
      181 ttgacaaagt attcagaaaa atataataat taagtgaata agaattcaac tgaaggagga
      241 acttgaatga agaagacttg gcgatatgca tgggtattat tgttgtgtgt cactcttgtt
      301 ttatcagcat gtggaaaaag cagctcgcaa acctcgagca atgaaaataa caaaactgaa
      361 aaaagtaatg cgaaaggtgg tactttaaat gttggactta ctgcaccacc agagggcaac
      421 ttccaagatg tttttgcaag ttcgacatca gattcagacg ttgtagcatt ttttaacgat
      481 ggtttaacag aatcagatga gcatctgaat atcaaaccga aaattttgtc ttgggaaaaa
      541 agtaaggaag atgatttaaa gtatacattt aaagtgaaaa aagggattaa atggcaagat
      601 ggcaatccat ttacaattaa tgactggatt ttcactttag agacaatagc cgatcctgat
      661 tatacagggc cacgatatag tggtgcagca gtcattaaag gggcagaaga aaagcataag
      721 ggtaaagcca aaacaattag cggtctcaaa aagattgatg attacacagt agagttgact
      781 tttaaagcag ctaaagcgaa taacttaatg gcgttatgga cgtcatctgt catcagtgaa
      841 aaagtcttta aagatattcc agtaaaagac atggcgaaat ctgatgctgt acgtaagcat
      901 ccgattggta tcggaccatt catcgtgaag aacattgttg atggagaatc agtagaactt
      961 gtgaaaaata aagattattg gcaaggcgaa cctaatatcg acaaagtaaa cttacgtgtg
     1021 gttgaacaaa cggcaatggc ccaagcactt gaaaaaggtg acattgatat ggctgatgta
     1081 acaggcccaa ttgctaaaga aattaaagat cataaagctg aaaacgtaaa aatattagag
     1141 tcaccttcaa cttcttatgc aattatcggt tttgtattaa atgattatga taaaaaagag
     1201 atgaagattg gaaaagagcg tcctaaatat caagataagc gactgcgtaa agcaatggca
     1261 tatgcaatta atcgtaaaga atggattgat gcatttttct atggatatgc gaaaccatta
     1321 tacggtttga ttccttcaga acattggagt ggagcaaaaa aaggtgaagt aacagagtac
     1381 gattataatg tagaaaaagc gaaaaaatta ctcgatgaag caggatataa agataaagat
     1441 ggtgatggat tccgtgaaga ccctaatggt aagccgtttg tcatcaactt aaaacattat
     1501 tctggttcta accctacttt tgagccacgt acagccgcac tgaaagggta ttgggaaaaa
     1561 gtaggactga aaacgaaagt cgaaatggaa gagtttggta aatataataa tgatttagaa
     1621 aatgcatcaa gtgatatgga agtgtatttc cgtagttggc aacaaggttc agaccctgat
     1681 ccatcagatt tgtacaagtc gacagcctta tggaatgaat cacgctacaa taacccgaaa
     1741 gccgataaac tattagaaga agctgtggac agtaaaattg taggtgatga taacgataaa
     1801 cgtcgtaaaa aatacatcga atggcaaaaa ttgatgactg acgatctacc tgtcattcca
     1861 attactgagt ttatcaatac aacagctgtc agcaataaag tgaaaaatta tgaagtatct
     1921 ttgaaagggg ctaacccaat gtatcaatgg tcggttgaag agaaaaaata atagcacata
     1981 aatggagaaa gggaatgatg acacactgtc tcttcccttt ttctatattt acttaaaatg
     2041 gattgtcatt aataacgact taaaaatgaa tgacatgtgg ttaaagaaag gggcgtttat
     2101 gaaaatgggt cagctattag agatcaacaa cttaactaca acatttgata ttgaaggtca
     2161 gccttatgca gcgatttcca atattgattt aacggtcaat aaaggtgaag tgatggggat
     2221 tgtaggggaa tcaggttcag ggaaatccgt ccttagtttg tcgatattaa aactattgcc
     2281 agaaaaaatt tcaaatatcg catctggaga agtgatttac gaaggcaaac gtattgatca
     2341 gtacgatgta gaacaaatga atcaaatgag aggaaaagag attgcgatga ttttccaaga
     2401 gccgatgaca tcactcaatc cggtgtttac gattggtaat caattgatgg aaatgctaat
     2461 gctccatttg aaattgtcaa aatctgaagc aaaagcgaaa gtaatctcac tattaaaaca
     2521 agtcggtatt ccacgtgctg aaaaagtcgt tgacgaatat ccgcatcaac tgtcaggtgg
     2581 aatgcgtcaa cgtgtcatga ttgcgatggc gatttcatgt tcacctcagt tgttgattgc
     2641 tgacgaacca acgactgcac ttgatgtcac tgttcaagca caaattctcg acttgttgaa
     2701 acgtattcaa gaggataccc aaatgagcgt catttttatt tcacatgatt taggagtgat
     2761 atctgaaatt tgtgaccgtg tcgctgttat gtatgcgggt gaagtggttg agactgcaag
     2821 tgttgaagat attttcagtc aaccgatgca tccttacaca caattactgt taaaagccat
     2881 tccacgcctt gatgtgaaac aagagaaatt agagacgatt cgtggttcag taccgagttt
     2941 agatgagctg ccgaaagttg gttgtcgttt tgcgaatcgc tgtccacacg cgatggcgat
     3001 ttgtacgttg aaagatattg aaccttatca attcgagcgg gaacatcaag tgaaatgcca
     3061 tttatacaca caagatacgg cattgaagga ggcgaacgag tcatgagtga atcatatgtg
     3121 ttagaagtga aaaatttaaa acaatattat ccgattaagg caggagtctt ccaaagaaaa
     3181 gtaggcgaag tgaaagcggt ggataatatt tcctttaaaa ttaaaaaggg acaaacggtt
     3241 ggtcttgtag gtgaatcagg ctgtggtaag tcatcagcag gacgtacgat tttatgttta
     3301 caaaaagcga cagagggcga aatcttattt tgtgggcaag atttaacaaa attaaaaggt
     3361 aaagctttaa gagaagcccg taaaggtttt caaatggtgt tccaagatcc gtatgcgtca
     3421 ttgaatccga tgcaaatggt gggcgatatt gtcggtgaac cgattcgtaa ttattatcat
     3481 aaaaagcaac gtgacattga agatgaagtg aaagaccttt tgaagcgtgt tggacttaac
     3541 gaagcggatt attacaagta tgcacatgag ttttcaggcg gtcaacgcca acgtgttggt
     3601 attgcacgtg ccttagcgct caaaccaaga ctgattattg cggatgagcc agtcagtgcg
     3661 ttagatgtat ctgtacaatc acaagtgttg aatattatgg atgaactaca agaagaaatg
     3721 gggttaagtt acttatttat tgcacatgat ttgagcgttg taaaacatgt gagtgactat
     3781 atttgcgtga tgtatttagg gcacattttg gaacaaggac ctgctgacgc tatttacgaa
     3841 aatccacaac atccgtatac acaatcactt atttcagcga ttccagatat taatccgaca
     3901 cagcgcaaga aacgaatttt attggagggt gatttgccat ctccgagtca tccgccagtg
     3961 ggttgtccat tccatacacg ttgcccggtt gctgaggcgc gatgtgcaca acaaaaacca
     4021 caagcagtcg aggtcggcaa agaacattat gcggcatgcg tattacttga agagggagag
     4081 gtgaaactat gatcacatta atcattcgtc gttttttgct gatgataccg atgttgttat
     4141 taatgtctgt cgtgattttt acaattgcga aattgcaacc tggtgatgca tttacaggca
     4201 atatggaccc aaaacttggg gcaaaatatt atgaagagca acgtgaaaaa ctcgggttga
     4261 atgatccgat tccaatgcaa tatatgaaat ggggtgctcg tgtgcttcat ggtgaattag
     4321 gggaatccat tcgttacaaa cgtccagtga tggatttaat tgaagagcgt atgccaaata
     4381 cgattttgtt ggggacagtg agtttgatta ttacatatat acttgcattt cctctaggca
     4441 ttatttccgg tagaaaacca tatagtttgt atgattatag tatccaacta ctcaattatt
     4501 tgatgcttgc gattccatct tttgttgcgg gtgtttttgc gatttatgta tttgcttttc
     4561 aatttggtat tttcccatat tcgggatctg tagaaatcgg acttgaaccc ggcacgtttg
     4621 aatattatgt cagcaaactg tatcacgtga ttttacctgg tacggtgctt ggcttacttt
     4681 cgacagcagg gtatattcaa tttttacgca acgatatcat tgaaaatgct cgaaaagact
     4741 atatccgtac agcacgtgct aaaggtttat cagaatcaaa aatctataat aagcatattt
     4801 tacgaaattc aattattcca atcgtgacat tttttggtgg ggacgtgtta tcggttttcg
     4861 gtggcgcagt gattacagaa agcatttttt catttcctgg aattggtaaa ttattgattg
     4921 aatctatctc tggtaaagac tatccattaa tgatggcatt gctgcttttc ttttcatttt
     4981 tagggttgct tgcgaatctt atttcagaca tcacatatag tatagtagac ccaagaatca
     5041 agagtaacta ggaggggcta tcatggaaaa tcaacaactt aaaaagagtc aatcaccctt
     5101 acaaattgcg cgtaaaaagt ttatgaaaaa taaaactgcg atggctgcaa ctatcgtact
     5161 tggcatgatt gtcatcattt cgtttttagc accattcatt gcccctcatg acccaaacgt
     5221 ccaaaattta gtgttaatca agggcgatat gtcgcttgag cattggttag ggacggattc
     5281 gggtggtcgc gatattttta gtcgcttatt atattctgga cgtgtatcac tgacatttgg
     5341 gttgttcacg tcgattggat taatgttgat aggtattgtt atcgggatga tttcgggata
     5401 ttatggcggc tgggtggata cggtactcat gcgttttaca gagtttgtca tgttatttcc
     5461 atttatccca tttgcggttg tattaaatgc gacattcagt catgatattg aaagtcaata
     5521 tggttcagcg atagtgttag ggaccgtgct agtcttgctt tcatgggttg gtattgcgag
     5581 gatggttcgt ggcaaagtga tgcaagaaaa agaaaatgaa tatttcctcg cagcgcaatc
     5641 tattgggaca ccggtacata aaatattatt aaaacattta ttaccgaata ttttaagtgt
     5701 gattattgtt caagcaacac tggtattcgc cgttcaaatt gtggccgaag caggtttgag
     5761 tttccttggt tttggaatca gtaaagaggt tccaacatgg gggaatatgt taacagatgc
     5821 acaagaaggt gacattttaa ggagtaaacc gtggatttgg atgccacctg cactcattat
     5881 aacagtgacg attttatgta ttaattttat tggtgaagga ttaaaagacg cactgaaccc
     5941 aaaatctaag cggtaaatca ttatcaaaga aaatgagagt acatggatgt tattgacctc
     6001 cgtgcactct tattttttat gcgatggcag gattcacgtt atttctgaga tgtattagat
     6061 tatcttttta atataaaatg tttgaaaatt ttagattttt gcaaaatttt attgacaaaa
     6121 aattcggata aatacaataa taagagaaag gcgtttttaa acatttaaca attagggagg
     6181 aaatgggatg aaaaaggctt atcgatattt atggttttta tcattaattg tagtcgttgt
     6241 gctctcagca tgtggaaaaa atggaaacga gacatcaaat acgtcgaata aaaccggcaa
     6301 aagcgatgcg aaaggcggga cattgacagt agggatagcg gaaccacctg aggggaactt
     6361 ccaatctatt tttactggga gtacaggtga ctctaatgtc attgatttct ttaatgattc
     6421 actgatcgat gtcggtgatg atttaaagat taaaccgaaa attttgtcat gggaaaaaga
     6481 caaaaatgat gatttgaaat atacgttcaa agttaaaaaa gggattcagt ggcaagacgg
     6541 taatccattt acaatcaatg actgggtttt tactttagag acgctagcag atcctgacta
     6601 cgatggtccg cgttatagcg gtgtcgcggt cattcaaggt gcggaagaaa aacgtaatgg
     6661 ccaagctgat cgtattagtg ggattaagaa aattgatgat tacacagcag aaatcacatt
     6721 taaagaacat aaggcgaata atttattaga gctgtggaca tcggcgccaa ttagcgaaaa
     6781 agtgtttaaa gatattccag ttaaagatat ggcgaaatca gacgccgtac gtaaaaatcc
     6841 aatcggtatc ggaccttata aagtgaagcg tattgtcgat ggcgaatcag tggaactcgt
     6901 caaaaataaa gactactggc gcggggaacc gaatatcgac aacatcaatt tgcgcgtcgt
     6961 ggaacaaaca tcgatgacac aagcgttaga aaatggcgat attgatatgg caacaattac
     7021 agcgccaatc gcgaaagaaa ttaaagatag tggtagcgaa aacttacaat tgttacaagc
     7081 accatcaaca tcttatgcga tcgtcggatt cgtgctaaat gattacgata aaaaagcgca
     7141 aaaaatcggt aaagaaagac cgaaatatca agataaaaaa ttacgtcaag caatggctta
     7201 cgcaattaat cgaaaagagt ggattgatgc attttactac ggctacggta aaccacttaa
     7261 cggtttaatc ccttctgcac attggagtgg tgcgaaagaa ggcgatgtta aagaatataa
     7321 atatgacgtg gataaagcga aacaattatt agacgaaggg ggttataaag ataaagatgg
     7381 tgacggtttc cgtgaagatc ctcaaggtaa accattcgtc gtgaatctga agcactatgc
     7441 tggctctaac ccaaccttcg aaccacgtac agcagcactc aaaggttact gggaaaaagt
     7501 aggccttaaa acgaaagtcg aaatggaaga attcggtaaa tatagcagtg atttagaaaa
     7561 gtcatcgaaa gatatggaag tgtacttcag aacgtggcaa caagggtcag acccggatcc
     7621 ttctgagtta tacagatcaa cggcactttg gaatgaatca cgatacaata atccgaaagc
     7681 cgataagatt ttagatgaag ccgtcgatac aaaagtagtg ggcgacgaca atgacaaacg
     7741 taaagaaaaa tatttagaat ggcaaaaaat aatggctgaa gatgtacctg tcattccgat
     7801 tgtagagtta gaagatgtga ctgcagtgag cagtagagtg aaaaactttg aagtatcact
     7861 gaaaggttct aacccgattt atgaatggtc agttgaagac aagaaataat aaatggttta
     7921 gaagagggat acgtgacggc gaacgtccgt ccccttttct tatataaaga aagagattca
     7981 tttttatttt tgatacgggt ataggggtga aaatatgaat gagagcaaat tattagaagt
     8041 taaaaatttg tctaccgcat ttgaaataga gggacaacag tacgatgcga tttctaatat
     8101 tgatttagaa attaacaaag gagaaatttt aggtattgta ggagaatcag gctctggcaa
     8161 atcagtgtta agtttatcca ttttgaattt gttgcctgag aagattgcgt cgatccgttc
     8221 aggtgaagtc cgctataaag gtcagcgcat tgataatatg gcgcacgaag cattcaacaa
     8281 agtacggggt aacgaagtgg cgatgatttt ccaagagcca atgacctcac tcaatcctgt
     8341 atttacgata ggcaatcagt taatggaaat gattatgttg catttaaagc tatccaaaag
     8401 tgaggcaagg gctaaggcga ttcaattgct ccaagatgtg gggattccac gtgcgaataa
     8461 agtggtcgat gaatatccgc atcaattatc aggtgggatg cgtcaacggg taatgattgc
     8521 gatggcgatt tcatgtgcac cacatctgct tattgctgat gaaccgacaa ccgcactcga
     8581 tgtaacggtt caagcacaaa ttttagcatt gttaaaacgg atacaaacag aaacgcaaat
     8641 gggtgtcatt ttcatttcac atgatttagg tgtcatttca gagctatgcg accgtgtagc
     8701 agtcatgtat gcgggaaaaa ttgtagaact cgcacctgta gaagagattt ttacacatcc
     8761 taaacatcct tatacacagt tgttattaaa ggcgataccg cggttagatg tgcaacaaga
     8821 gacacttgag acgatcaaag gttctgtacc tagtttagtt catttacctc aacaaggatg
     8881 tcgttttgtc aatcgctgtc cacatgcgat ggcgatgtgt cagacgcaag atgtcagtgg
     8941 cattcaagtg gcagatgcgc atcacgtgtt ttgtcattta tatcaaaatg aaacacaact
     9001 gaagggggta gggcaacatg actgattaca ttttagaagt gaatgattta aaacaatatt
     9061 atccgattaa aggtggcgtg tttcaacgta aaattggcga agtgaaagct gtagacggca
     9121 tttcttttgt gattgaacct ggtcaaactg ttggattagt aggtgagtca ggttgtggga
     9181 aatcatcggc tggacgtacg attttacagt tacagcaagc ccattcagga gagattaaat
     9241 tttgtgggca agacatcaca aaattaagag gacgtgcatt aagagaagcc cgtaaaggtt
     9301 ttcaaatggt gttccaagat ccgtatgcgt cattgaatcc gatgcaaatg gtgggcgata
     9361 ttgtcggtga accgattcgt aattattatc ataaaaagca acgtgacatt gaagatgaag
     9421 tgaaagacct tttgaaacgt gttggactta acgaagcgga ttattacaag tatgcacatg
     9481 agttttcagg cggtcaacgc caacgtgttg gtattgcacg tgccttagcg ctcaaaccga
     9541 aactcattat tgccgatgaa ccagtcagtg cgttagacgt ttccgtacag tctcaagtgc
     9601 tcaatattat ggcagagtta caagaagaat ttggactcag ttatttgttt atcgcccatg
     9661 atttaagtgt cgttaagcat gtcagtgact atatttgtgt gatgtattta gggcatattt
     9721 tggaacaagg acctgctgaa gcaatttatg aaaacccgag tcacccctat acgaaagcac
     9781 tcatttcagc aatcccagaa attgacccac gtcagcgtaa ggaacgtatt ttactggaag
     9841 gtgatttacc gtcgccaagt gatccgcctt ctggatgtcc atttcatacg cgatgtccgg
     9901 tagctgaggc gcgatgtgca gaagtgaagc cgccatcagt ggaagtgagt gctaatcatt
     9961 atgcagcatg tgtgttgtta gaaaatgggg gtgtcgcaca atgacaacat taatcatcag
    10021 acgtatttta ttaatgattc cgatgctcat tttaatgtca gtcgtcatct ttaccatttc
    10081 taaattacaa cccggtgacg cattttcagg caatatggat ccaaaagctg gcgcgaaata
    10141 ttacgagcaa gaacgtgaac gcttaggctt aaacgaccca ctccctgtgc aatatatgaa
    10201 atggggcgaa cgtgtcctcc atggagattt tggcgattct attcgctata aacgtccagt
    10261 gatagattta gtgaaagaac gtatgccgaa taccattttg ttaggggtca caagtttagt
    10321 cattacatat ctcattgcat ttccgctcgg tatactctca gggcgcaagc cgtatagttt
    10381 atacgattac agcattcaat tcttaaatta tttgatgctc gccatcccgt cattcgttgc
    10441 aggggtattt gctatttata tttttgcgtt tcaacttggg ctctttccgt tttcaggttc
    10501 cgttgcgctc ggtgtcgaac ctggttcagc ggcgtattat ataagtaaga tttatcatac
    10561 gattttgcct gggacagtgc tcggtttatt atcaacagcg agttatgttc aatttttaag
    10621 aaatgatata atcgaaaacg cgcgtaaaga ttatattcgt accgcacgtg caaaaggttt
    10681 atcagagtct atggtatata acaaacatat tttaagaaac tcgattattc cgattgtgac
    10741 attttttggt gcagatgtat tgtctgtatt tggtggtgcg gttattacag aaacgatttt
    10801 ttcatatcca ggtatcggaa agctactcat tgatgcgatc agtggtaaag attatccatt
    10861 aatgatggca ctgttactat ttttctcatt tttaggatta ctcgctaact taatttcaga
    10921 tattacgtat agcatagtcg atccgagaat taagagtaat taggggggat acagatggat
    10981 aagttgaaaa aagcaaaaag taaatcacca ctcacaatag cgcgcaagaa atttcttaaa
    11041 aacaaaccgg caatgatagc gactgtggta cttggtctca tcgccataat ttcattttta
    11101 gcaccactgc ttgcacctta tgatccgaac ttacaaaatt tagtgttgat taaggggggg
    11161 atgtcagcag aacactggct cggtacagat tctggtgggc gagatatttt aagccgcttg
    11221 ttgtatgcag ggcgtgtgtc gttactattc ggatttttta cttctattgg acttatgacg
    11281 attggcgtat tgattggaat gatttctggc tattacggtg gctgggtgga taccgtgctc
    11341 atgcgtttta cagagtttgt catgttattt ccatttattc cttttgcggt cgtgttgaat
    11401 gcaacgttca gtggtaaaat cgaaaatcaa tacggctcag ccattgtgtt aggtttggtg
    11461 ctcatcgcat tatcttgggt cggtgtcgca aggatcgttc gcggtaaagt gatgcaagag
    11521 aaagagaatg aatatttctt ggccgcgcaa tcaatcggaa cgcctgtgta taaaatttta
    11581 tttaagcatt tattaccgaa tattttaagt gtgattattg tacaagcgac actcgtattt
    11641 gccgtacaaa tcgttgccga agcaggactc agtttcctcg gatttgggat tagtaaaagt
    11701 gtgccgactt ggggaaatat gttaacagat gcgcaagaag gcgacatttt aaggagtaag
    11761 ccatggattt ggatgcctcc cgcactcatt attacagtga cgattttatg tattaacttt
    11821 attggtgagg gattaaaaga cgcactgaac ccaaaatcaa gaaggtaaaa tggacaggat
    11881 ttcacttcta taatattcag gaataaaaac aatagtttac gtacgtcagt aggtggaaag
    11941 atttgactgt aaatgattga aaatgttttc gataatgtaa gaagttgacg ccagagagaa
    12001 catgcaccag aagaatttga gaatattatg aaaaaacgag caaaaatgat aaaaatgtga
    12061 tagactttgt gcaataacta aaattgtaaa aagtaaatga tgatttctag ttgaaatagt
    12121 gtgctgaaca tgaatttgta ttaaaagtca ggacgctact gttaggaaca aaggggatga
    12181 ggtcgatgtt gaaaaaattg atgctactat tttttgcaat ggtcatttca acaaccattg
    12241 cagaaacgtt tctgattgct ggtacatggc aatatttgtt gatgcaatct ctatcactcg
    12301 catttatcat attctttatt tatcattttg tcgtttttca gttacaagaa aagcggcaag
    12361 aaaaacgtta tcaagaccgt caatggatcg ttaataaaga acatgaagat gaaaatgtaa
    12421 agaaacgttt agttcgtaaa taacttgaat cataaaatgg ttgaggagac ataaaaattt
    12481 ttgatgctat tgatgcaata ttttgtgtga tttgccctcc ttatgatttg tgatttttat
    12541 tgccctcatg ccttcgcttt ccaaggggct tgccttgcaa ctcaattcgg tttccttcaa
    12601 gtgaacagtt caatcaagtc aaattgagtt gaggcgagac gcttaggaac gcgaattcaa
    12661 ggtaacaatt cattgtgtaa actaagaaaa ggatcatgca agtgtaccaa tccgaaatgt
    12721 cgtgtacaca acaacttgaa acgttcacca acatcatcga ctattcatat caaaaagctc
    12781 gaagttaaga caacagttgt catctcactt cgagcttttt tcctaatatt atgagaacac
    12841 ttcggatcgt ttggaatcac caaagatttt tgctttaatc gcttcacctg ttggcgtacc
    12901 agcgagcccc cctaaacctg tttcacgtaa agatgcagga aggttacgac ccactttatc
    12961 catagcctca atcacctcat ctactggaat acggctttcc acacctgcaa gtgcaagatc
    13021 tgctgaaatc aatccattgc cggaaccaat tgcattccgc atcacacaag gaatttctac
    13081 taaccctgcg acagggtcac acactaaacc aagcaagttg ctaatactaa ttgcaagtgc
    13141 atgtccagct tgttctggtg taccaccgaa tgtttgtaca gcagcagcgg cagccattgc
    13201 agatgctgaa cccacttctg cttgacagcc tcctgttgca ccagcgaccg aagcattgtt
    13261 agcaatcacc ataccgcata tcgaggctga aaatagaaat tcgagcattt ggtcattcgt
    13321 taagtcatgt gattgctcta gtttaaagag tattcctgga atggtgcctg aagaaccagc
    13381 agtcggtgtc gcacaaataa tgcccattgc tgcgttgact tcattagtgg caaccgctcc
    13441 ttcaacagct gacatcatat catatccaga aagggcttta ttgtgttggt tatacttgtg
    13501 gattttaatc gcgtcctgcc cggtataacc tgttacactt ttaacccctt cccctgtcgt
    13561 acctttttga actgcttcac gcattgtgtc taggttttgt tgcatcatgt ccatgactgc
    13621 ttcgcgcgtc ataccacgtg tttccatttc atgtttaatc ataatttctg caaaagttgt
    13681 gttattttca gtcgcatagt cgattaattc tttcattgta tcaaacatga gagtccctcc
    13741 aatttaatct atatatgaaa agtttaaaaa cgcatatttt tctttgattg attcaagtag
    13801 ttcgctttta attggtttat tcaaatgtaa ggcaagtaaa caatggcctt ttgtcatcgt
    13861 tttaatctct tcattgatgt cgacttcatg ctcgattaaa tcgttaatta aatgattgac
    13921 ttctgcaatt ttacattccc catcaatgac aagaataggg ggtgtgtgtg ccatcagaat
    13981 acacatttgg ttaacgtgaa tacttttcac tttgaatgca ccaccgccaa ttgaaatgcc
    14041 attcaactcg acgtgacgat caccgtgatc gatttcgatg actgcacagt tcgggtgttc
    14101 acctaaactg gaacctgatt tttcgataaa ttcaaagtca atgccttcac ttcttgcaat
    14161 ttttgtcgat gttttaatgc gagaatcgaa tgtactaaaa cctaataagc caccgataat
    14221 cgctaaatcc gtgccgtgac ctttatgcgt ttctgcaaaa gattcgtaat aattcacaac
    14281 gattttctca ggtgtatcgc caaggacagc acgagcggcc tgaccaattt tcactgcacc
    14341 tgcagtatgt gaacttgatg gccccatcat cactggacca ataatatcaa aagcgctttg
    14401 ataatctttt gtacgtgcca taattcatcc gctccttaat ttgtttgttg attcacatga
    14461 ggcacttgaa tgtcaagcgt tggtcgtttc ttactgatga atgtgccaat gaaaaagctc
    14521 ataataatac taatgattgc tacaacgaca attgtaatca cggtaggcac cacttcatta
    14581 aagcctagcg ctacaatcgg accggcaata ggtgtagcca tgcctggttg attcacaacg
    14641 atacccatgt atgtgataaa caagccattg accattccta ccactgcatt tgtaccatac
    14701 agctggattg gatattttgc gatcgtgtcg atttgtgtta atggttcgac agcaacggca
    14761 aaggcttttc ctgcattgcc gattctaagt tttctaaaca tcataaagtt gacaaatgag
    14821 ctacccatac aaccgagcgc accaatcgcc attggaatac ccgtaagtcc taataagctt
    14881 gtgaaaacca ttgaacttaa cggtgtcata cctacaacgg gcacaatcgc accgataaca
    14941 agtgcaagag cgtacggatt attatcacct acagctgtga tggcagtacc gatttgtttc
    15001 aatacggcag tgacactagg tgatacgata gatgcaatac catatgcaat ggcaggagat
    15061 aataagatca ccacgatcag gtctaatcct tcaggaacat atttttcaag tgctttaata
    15121 ccgaaagcaa cgaaatatgc cgcaataaaa gcaggtaaga gtttaaaatc aaatagaacg
    15181 agtcctgtta acacagcgaa tacaggatta ataccgaact ttaaacaagt gagaatgccc
    15241 actgcaacac cacttaaact tcctgcaact tcccctaatt taataaaata ttctgagtga
    15301 aacacgccac cgattgcgta ttttaagaat gcttccggta aaaatgaagc acaggcagcg
    15361 cctgataaag cttgtaaact gactttacca ttcggggcaa attttaagaa taaagtcatt
    15421 gcaagtaaaa caacgagtaa tgtcccgatt cccaaaataa aatccatatg agttccttct
    15481 ctcttttatt tttatgtttt taattagata gctatcccaa acaaccatca ttctaagggc
    15541 ttcatttc
//
LOCUS       DANHOL010000053        15463 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.053, whole genome shotgun sequence.
ACCESSION   DANHOL010000053 DANHOL010000000
VERSION     DANHOL010000053.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 15463)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15463)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15463
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.053"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            146..817
                     /locus_tag="PTC08_001179"
     CDS             146..817
                     /locus_tag="PTC08_001179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4887 domain-containing protein"
                     /protein_id="HDK5682693.1"
                     /translation="MSAPKPNEQGSRNVKPDKKKRRLLGFLSVIVILLLLGGLVFAIF
                     SFVDQSHRGNERLKEKSIEEQKEKRDAEIKKEKARKEREAREKERSIEAAQAEQERSI
                     EAARQAEIEAERQAQLEWQRQQQQQQQQQREKEAEARKSKSKTEEEKDDSDNKATEKE
                     RTTEEATTEEPKTTQSKPSAEQRTSQGTQTGQSESNERPTAERNTAPQQRSEPSSKAR
                     NSDES"
     gene            complement(916..1146)
                     /locus_tag="PTC08_001180"
     CDS             complement(916..1146)
                     /locus_tag="PTC08_001180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682694.1"
                     /translation="MSKQSDQPEVIDPSDPRYRHPDEINHSQDNTFQNDTGPFRRTHV
                     CTIGCTPVGCLPGCLFSIILSILLTLLLNLIF"
     gene            1448..2485
                     /locus_tag="PTC08_001181"
     CDS             1448..2485
                     /locus_tag="PTC08_001181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682695.1"
                     /translation="MERMIHVQQKIVPDLIDKMRRRFSILTTIQKYQPVGRRTLSELL
                     NLTERVLRSETDLLKQQELISVKSTGMTLTSQGLDVVSQLNAYFDQYTDYHHLAQSIK
                     STYQLDEVHVIPGDSDKDSNVKVELGRIAGQLLEKQLYDHAIVSVTGGSTMASVSDAM
                     SHLPFQVLFVPARGGLGQNVIFQANTICSRMAQRTGGSYTTLYVPEQVSELTYQNLMN
                     EPSVIQTLDKIRESQFTIHGIGDALKMAKRRQSSPEVIEKLQHHFAVGEAFGYYFDQQ
                     GQIIHRVKTIGIQLEEAQSKAHIFAVAGGESKGLAIKAYLKMATPNTVLITDEAAAKV
                     ISRERFVENKK"
     gene            2548..3555
                     /gene="gap"
                     /locus_tag="PTC08_001182"
     CDS             2548..3555
                     /gene="gap"
                     /locus_tag="PTC08_001182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HDK5682696.1"
                     /translation="MAVKVAINGFGRIGRLAFRRIQDVENIDVVAVNDLTDDDMLAHL
                     LKYDSTQGRFTEEVEVIDGGFRVNGKEVKSFSEPEPKNLPWGELDIDVVLECTGFFTD
                     KEKAEAHIEAGAKKVLISAPAKGDLKTIVYNVNHEILDGTETVVSGASCTTNSLAPVA
                     KTLQDNFGIVEGLMTTIHAYTGDQNTLDAPHRKGDKRRARAAAENIIPNSTGAAKAIG
                     LVIPEIDGKLDGGAQRVPVATGSLTELTVVLEKEVSVEEVNKVMREATNESFGYIEDE
                     IVSSDVIGMTFGALFDATQTRVMTVGDRQLVKVASWYDNEMSYTAQLVRTLEYLASQS
                     K"
     gene            3687..4877
                     /locus_tag="PTC08_001183"
     CDS             3687..4877
                     /locus_tag="PTC08_001183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HDK5682697.1"
                     /translation="MAKKDVTNVELKDKVVLVRADFNVPMKDGEITNDNRIVQALPTL
                     KYIIEQGGKVVVFSHLGKVKEESDKEKLSLAPVAKRLSEKLGQDVQFIPETRGEKLES
                     AIQALNSGDVLMFENTRFEDVDGKKESKNDSELGRYWASLGDIFVNDAFGTAHREHAS
                     NVGISTHLETVAGFLMEKEIKFIGGVVENPNKPVVAILGGAKVSDKIGVIENLLNIAD
                     KVLIGGGMAYTFLKAQGKEIGLSLLEADKIDFAKDLLERASDQIVLPVDAKVAKEFSN
                     DAQITTVSIDDIPEDQEAMDIGPETVALFKEQLKGAHTVVWNGPMGVFEFSNFAQGTI
                     GVCEAIAELQDATTIIGGGDSAAAAMQLGFEDDFTHISTGGGASLEYLEGKELPGIKA
                     IANL"
     gene            4923..5684
                     /locus_tag="PTC08_001184"
     CDS             4923..5684
                     /locus_tag="PTC08_001184"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HDK5682698.1"
                     /translation="MRKPIIAGNWKMNKTVQEAKDFVQTLPALPDTNEVEAVICAPTI
                     QLDALISLTKENVAPGLKIGAQNTYFEESGAFTGETSPVALEALGVSYVVIGHSERRD
                     LFHETDEDINKKAHAVFNHNMTPIICVGESDEERESGKANEIVEAQVEKALKGLSDEQ
                     IKKVVIAYEPIWAIGTGKSSTAKDANEMCAAVRQKIAKLTSDEVAQATRIQYGGSVKP
                     GNIKEYMAETDIDGALVGGASLKVEDYTQLLEGAK"
     gene            5687..7204
                     /locus_tag="PTC08_001185"
     CDS             5687..7204
                     /locus_tag="PTC08_001185"
                     /EC_number="5.4.2.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002956091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-bisphosphoglycerate-independent
                     phosphoglycerate mutase"
                     /protein_id="HDK5682699.1"
                     /translation="MAKKPTALIILDGFANREEVHGNAVKQAHKPNFDRYYEKYPTTQ
                     IEASGLDVGLPEGQMGNSEVGHMNIGAGRIVYQSLTRINKSIEDGDFFDNDVLNKAMD
                     HALNNHSALHIFGLLSDGGVHSHYKHLFTLLELAKRKNLTKVYVHAFLDGRDVDQKSA
                     LKYIDETEEKFKALGVGQFASVSGRYYAMDRDKRWDREQKAYDAIRGFSDVKYASARE
                     GVQANYDNNLTDEFVEPFVVENQNNGVNDGDAVIFYNFRPDRAGQMSEIFTSKAFDGF
                     EVERVNDLFYATFTKYNDQVDSAVVFEKVDLKNTIGEVAQDNGLVQLRIAETEKYPHV
                     TYFMNGGQNEEFEGERRILINSPKVATYDLKPEMSAYEVRDALLKELDKGELDLIILN
                     FANPDMVGHSGMLAPTIKAIEAVDECLGDVVDKILDMDGQAIITADHGNSDEVLTDDD
                     QPMTTHTTNPVPVIVTKEGITLRETGRLGDLAPTLLDLLNIEQPEDMTGESLIQH"
     gene            7332..8636
                     /gene="eno"
                     /locus_tag="PTC08_001186"
     CDS             7332..8636
                     /gene="eno"
                     /locus_tag="PTC08_001186"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017466665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HDK5682700.1"
                     /translation="MPIITDVYAREVLDSRGNPTVEVEVLTESGAFGRALVPSGASTG
                     EHEAVELRDGDADRYLGKGVEKAVENVNEIIAPELIEGEFSVLEQVSIDKMMIQLDGT
                     ANKGKLGANAILGVSIAVARAAADFLGQPLYKYLGGFNATVLPTPMMNIVNGGSHSDA
                     PIAFQEFMILPVGAESFKEALRWGAEVFHALAKILKKRGLVTAVGDEGGFAPKFEGTE
                     DGVETILEAIKAAGLEPGKDVFLGFDCASSEFYENGVYDYTKFEGENAAKLTAEEQVD
                     YLEQLVNKYPIITIEDGMDENDWEGWKLLTERIGDRVQLVGDDLFVTNTEILSKGIEQ
                     GIGNSILIKVNQIGTLTETFEAIEMAQKAGYTAVVSHRSGETEDTTIADIAVATNAGQ
                     IKTGSLSRTDRIAKYNQLLRIEDDLYETAKYEGLKSFYNLSK"
     gene            8773..9240
                     /locus_tag="PTC08_001187"
     CDS             8773..9240
                     /locus_tag="PTC08_001187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682701.1"
                     /translation="MPQLQDTELRAQHTGKLLAYLSFLFAVCLVIHQVMIVDGQVVTY
                     MLEHSGNKATENSINAINNSLRYIGILYILANAAGVVALKNQHPYLWWFMLAVFISQI
                     FNALLNPPILYTAIFHVKGFFGLIPYALVIVGSLVLAVMMIRVSVKRKSTFNR"
     gene            9309..9542
                     /gene="secG"
                     /locus_tag="PTC08_001188"
     CDS             9309..9542
                     /gene="secG"
                     /locus_tag="PTC08_001188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499357.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecG"
                     /protein_id="HDK5682702.1"
                     /translation="MHSFFVVLLIIDCIALITVVLLQEGKSNGLSGAISGGAEQLFGK
                     QKQRGVDLFLHRVTIVLSIIFFVLMLGISYFNM"
     gene            9641..10381
                     /locus_tag="PTC08_001189"
     CDS             9641..10381
                     /locus_tag="PTC08_001189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxylesterase"
                     /protein_id="HDK5682703.1"
                     /translation="MKIQLPKPFFFEEGKRAVLLLHGFTGNSSDVRQLGRFLQKKGYT
                     SYAPHYEGHAAPPEEILQSSPHVWYKDVLDGYEFLVEHGYDEIAVAGLSLGGVFALKL
                     SLNRTVKGIVTMCSPMYIKTEGAMYEGVLDYARQFKKYEGKDDETIEREMAAFHPTDT
                     LRELQGTIQEVRDSVDEVIDPILVIQAEQDEMINPDSANVIYDEVMSDEKRISWYKES
                     GHVITIDKEKEAVFEDVYQFLESLDWSE"
     gene            10436..12793
                     /gene="rnr"
                     /locus_tag="PTC08_001190"
     CDS             10436..12793
                     /gene="rnr"
                     /locus_tag="PTC08_001190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease R"
                     /protein_id="HDK5682704.1"
                     /translation="MNLKEEIIAIIKSADYEPMSVSDFQDALGLSSADSFRDLIKILV
                     ELEQTGMVTRTKQDRYQKQQQKTNSGLVRGTLSQNKKGFAFLRPDDQEMEDIFIPPTK
                     INRAMDGDVVLVEVKKSRGDFRKGKFEGEVKAIESHSIKQVVGTFSEARHFGFVVPDD
                     KRIMQDIFVPKGQELGAVEGHKVLVQITQYSDGTNSPEGQISAILGHKNDPGVDILSI
                     IYQHGIEIEFPDDVLKEAENVPETILPDELKGRRDLRDELTITIDGADAKDLDDAIAV
                     KKLDNGNTELTVSIADVSYYVTEGSALDREAYDRATSVYLVDRVIPMIPHRLSNGICS
                     LNPEVDRLAMSCRMEIDAQGQVVKHEIFESVIHSNARMTYDAVNRIITDKDAATRAQY
                     PEIVPMLDLAQTLSQQLIAMRKKRGEIDFDIKEAKVIVNEEGIPKEVVTRERGEGERL
                     IESFMLIANETVAEHFNQMEVPFIYRIHEQPKSERLRQFFDFITNFGIMVKGTGEDIH
                     PSTLQNIHEEIAGRPEDMVISTMMLRSMQQARYDADNLGHFGLAADYYTHFTSPIRRY
                     PDLIVHRLVRKYLIEKSMDGRAMHEWEEKLPQIAEHTSNRERRAIDAERDTDELKKAE
                     FMIQHIGDEFEGVISSVANFGMFVELPNTIEGMVNMQNMSDDYYHFDERQMALIGERK
                     AKVYRIGDVVKVKVIHVDVDERQIDFQIVGMPIDVSSKRERDPRGKTIQAKTKGTQFE
                     KTDKKKKRKSRKGKNARQRDKSGNTQHKPFYKGKKVKKKARKKKK"
     gene            12809..13273
                     /gene="smpB"
                     /locus_tag="PTC08_001191"
     CDS             12809..13273
                     /gene="smpB"
                     /locus_tag="PTC08_001191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SsrA-binding protein SmpB"
                     /protein_id="HDK5682705.1"
                     /translation="MPKKSGKGTLAENRKARHDYNIEDTIEAGIALQGTEIKSIRRGS
                     ANLKDSYAQVKHGEIFLHNMHIAPYEEGNRFNHDPLRVRKLLLHKREILKLGERTREI
                     GYSIIPLKLYLKHGNCKVLLGVARGKKKYDKRQSLKEKAVKRDMDRAMKQKY"
     gene            13347..13706
                     /gene="ssrA"
                     /locus_tag="PTC08_001192"
     tmRNA           13347..13706
                     /gene="ssrA"
                     /locus_tag="PTC08_001192"
                     /product="transfer-messenger RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00023"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00023"
     gene            14177..14971
                     /locus_tag="PTC08_001193"
     CDS             14177..14971
                     /locus_tag="PTC08_001193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000278088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exotoxin"
                     /protein_id="HDK5682706.1"
                     /translation="MNKKRFVISLLFSITILFVISSSTALADHTLDPTPDQLHKSSEF
                     KGLMGNVKYLYDRNFISESNVKSIDSLLAHDLIFCIRESEIKEYGLVKTEFASKELAQ
                     KYRNKQVDIFGANYYVNCYFSGKEKGNEEDNGKTCMYGGVTNYEGNHLDNHKSQTIYV
                     KVFENSKHIITFEIQADKKLVTAQELDAKARKFLIDKLNLYEFKGSPYETGYIKFIEN
                     DDKSFWYDLMPPPGNNFNQSKYLTMYSDNKTVESKDIKIEVHLTKK"
     gene            complement(15165..>15463)
                     /locus_tag="PTC08_001194"
     CDS             complement(15165..>15463)
                     /locus_tag="PTC08_001194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF1829 domain-containing protein"
                     /protein_id="HDK5682707.1"
                     /translation="EGKSKLTHHFDAVFPGQTTEYVKAIKNININTAKNALFDWDDVE
                     AYRNQTFDANARLNIITDNQDDISDAVTTMLSQYNVSVLSFHHKERLVQRFSNV"
BASE COUNT         5259 a         2532 c         3343 g         4329 t
ORIGIN      
        1 catttacatt aattgaaatt ccagtatact aaaagctaac tcattttatt aatttcggta
       61 aaatgcgtgc gttaagtttt gaattcataa tgaaatatga ttgaataaaa tatattgtca
      121 tcaatttata aagagaggga atgcaatgtc agcaccaaaa ccaaatgagc aaggcagccg
      181 caatgtgaaa cctgataaaa aaaagagacg tttacttggc tttttaagtg tcattgtcat
      241 actgttattg ctcgggggac tcgtctttgc cattttttca tttgtcgatc aatcgcatag
      301 agggaatgaa cgtttaaaag agaagtcaat tgaagaacaa aaggaaaagc gtgacgcaga
      361 gattaaaaaa gagaaagcgc gaaaagaacg cgaagcacga gaaaaagaac gaagcattga
      421 agcggctcaa gctgaacaag aacggtcaat tgaagcggca cgccaagcag aaatagaagc
      481 cgaacgacaa gcgcaactcg aatggcaacg tcaacaacaa cagcagcaac aacaacaaag
      541 agaaaaagaa gcagaagctc gaaaatcgaa gtcgaaaacg gaagaagaga aggacgacag
      601 cgataataaa gcaacggaaa aggaacgtac aacggaagag gcaacgacag aagaaccgaa
      661 aacgacacaa tccaaacctt cagccgagca acgtacatct caaggaacac agacaggtca
      721 atcggagtca aacgaacgtc caacagctga aaggaatact gcgccacaac agcgctcaga
      781 gccatcctca aaagcgcgga atagtgacga gtcataatat atcgtaatca taggcaaaat
      841 gaatagggca aaaaagggtc gttgagatat gtaagtcatc tcagcagccc ttttttatta
      901 atgatacgta tcgttttaga atataaggtt aagaagcaat gttaagagta tcgataaaat
      961 aattgagaaa agacagccag gcaaacatcc cactggggta caacctattg tgcacacatg
     1021 tgtccgccga aatggtcctg tatcgttttg gaatgtatta tcttgactgt ggttaatctc
     1081 atcaggatgt cgatagcgtg ggtcggatgg gtcaatgact tcgggttggt cagattgttt
     1141 agacatagtt tcacctcttt ctttcaatgt aaattatctt gtcaatgatt gcaatgaatg
     1201 gggtatcgat gtttagtttt agtggaaaat gtgaataata acatcacatc agttatcatg
     1261 ttgtgtattg atggtcgtta tttgtccaac gtttataaaa atcgggatgc tttttgactt
     1321 gcatttgttg tgcacaaata gtatgatgaa tttgtaaaca tgataagtat ttattgtatt
     1381 tgggactaaa aatgtcacgg catggcttga atatggccat cttgttacta ttaaggaggc
     1441 ctttatcatg gaacgtatga ttcatgttca acaaaaaatt gtgcctgact tgatagacaa
     1501 aatgcgtcga cgtttttcta ttctaacaac gattcaaaag tatcaaccgg ttgggcggcg
     1561 gactttaagt gagttgctta acctcactga gcgtgtgcta cgttcagaga cagatttatt
     1621 gaaacaacaa gaattaatat cggtaaaatc gacaggtatg acattgactt cacaaggttt
     1681 agatgttgtc tcacagctga atgcatattt cgatcagtat acggactatc atcaccttgc
     1741 acaatctatc aaatcgacat atcaacttga tgaagttcat gtgattcctg gtgatagtga
     1801 taaagattca aacgttaaag tagaattagg tcgcatcgct ggacaacttc ttgaaaagca
     1861 actgtatgat catgctattg tgtcagtaac aggtggctct actatggcat cggtaagtga
     1921 cgcaatgtcg catttgcctt tccaagtact ctttgtgccg gcacgtggcg gtctcggtca
     1981 aaatgtcata tttcaagcga acacaatttg ttctcgtatg gctcaaagga ctggtggcag
     2041 ttatacaacg ttatatgtgc ctgaacaagt gagtgaattg acctatcaaa atttaatgaa
     2101 cgaaccttca gtgattcaaa cgctcgataa aatacgtgaa tcacagttta caatacacgg
     2161 cattggtgat gcgctgaaaa tggcgaagag aagacaatcg tcaccagaag tcattgaaaa
     2221 acttcaacat cattttgctg tgggtgaagc gtttggttat tattttgatc aacaagggca
     2281 aattattcac agagttaaaa cgattggtat tcaactagaa gaagcgcaat caaaagcaca
     2341 tatttttgct gtggctggcg gagaatccaa agggcttgcg attaaagctt atcttaagat
     2401 ggcgacacct aatacggtgt tgattacaga tgaagctgcg gcaaaggtaa tctcaaggga
     2461 aagatttgtt gaaaataaaa agtgagtgaa ttgtttaagt attgaattga tccacttttt
     2521 aaatatcatt taaaggaggc cattaacatg gcagtaaaag tagcaattaa cggatttggt
     2581 agaattggtc gtttagcatt tagaagaatt caagatgtgg aaaatatcga cgttgtagca
     2641 gtaaatgatt taacagacga cgatatgctt gcacacttat taaaatatga ctcaacacaa
     2701 ggtcgtttta ctgaagaagt agaagtaatt gacggtggtt tccgtgtaaa tggtaaagaa
     2761 gtgaaatcat tctctgaacc agaacctaaa aacttaccat ggggcgagtt agacatcgac
     2821 gtggtattag aatgtactgg tttcttcact gataaagaaa aagctgaagc acacatcgaa
     2881 gcaggcgcga aaaaagtatt aatttctgca ccagctaaag gtgaccttaa aacaattgta
     2941 tataacgtta accacgaaat tttagatggt actgaaacag ttgtttctgg tgcttcatgt
     3001 acaacaaact cattagcacc tgttgccaaa actttacaag acaactttgg tatcgttgaa
     3061 ggtttaatga caacaattca cgcttacact ggtgaccaaa acacattaga cgcacctcac
     3121 agaaaaggtg acaaacgtcg tgcgcgtgca gctgctgaaa acattatccc taactcaact
     3181 ggtgctgcga aagcaatcgg tttagttatt cctgaaatcg atggtaaatt agacggtggc
     3241 gcacaacgtg ttcctgtagc aactggttca ttaactgaat taacagttgt attagaaaaa
     3301 gaagtttcag ttgaagaagt taacaaagtc atgagagaag caactaacga atcattcggt
     3361 tacattgaag acgaaatcgt atcttctgac gttatcggta tgacattcgg tgcgctattc
     3421 gatgctacac aaacacgtgt aatgactgtt ggcgaccgtc aattagttaa agttgcatct
     3481 tggtacgaca atgaaatgtc atacactgct caattagttc gtactttaga atatttagca
     3541 agccaatcta aataatatag attaaaatag gtttgtaagt acttaaatat gtgcttctaa
     3601 ctattttgta gctgatagta ggcgggggag cacaaacgct tctccgctta ttttaaaatt
     3661 gagagcgata acgaggagga tgctttatgg caaaaaagga tgtcacaaat gttgaattaa
     3721 aggataaggt tgttcttgta cgtgcggatt tcaatgttcc tatgaaagac ggcgaaatca
     3781 cgaacgacaa ccgtatcgtt caagcattgc caactttaaa gtacatcatt gagcaaggtg
     3841 ggaaagtagt cgtattctca cacttaggta aagtgaaaga agaaagtgat aaagagaaac
     3901 tttcattggc acctgttgca aaacgtttat cagaaaaatt aggtcaagac gtccaattta
     3961 ttcctgaaac acgtggcgaa aaattagagt ctgcaatcca agcattaaat tcaggcgatg
     4021 tgttgatgtt tgaaaataca cgttttgaag atgttgatgg taagaaagaa tctaaaaatg
     4081 atagtgaatt aggtcgttac tgggcatcac ttggcgatat ttttgttaat gatgcattcg
     4141 gtacagctca ccgtgaacat gcatcaaacg ttggtatttc aacacatcta gaaacagttg
     4201 ctggattttt aatggaaaaa gaaattaaat ttatcggtgg cgttgttgaa aatccaaaca
     4261 aacctgttgt tgccatcctt ggtggtgcaa aagtttctga taaaattggt gtcattgaaa
     4321 acttattaaa tattgctgac aaagtgctga ttggtggcgg tatggcgtac acattcttaa
     4381 aagcacaagg taaagaaatt ggtctttcat tacttgaagc agataaaatt gacttcgcga
     4441 aagatttatt agaacgcgca agtgatcaaa tcgtattacc agttgatgca aaagttgcga
     4501 aagaattctc aaacgatgca caaattacaa cagtttctat cgacgacatt cctgaagatc
     4561 aagaagcaat ggatatcggt cctgaaacag ttgcactttt caaagaacaa ttaaaaggtg
     4621 cacatacagt ggtatggaat ggtccaatgg gtgtgtttga attcagtaat tttgcgcaag
     4681 gtacaattgg tgtgtgtgag gcgattgctg agctgcaaga tgcgacaaca attatcggtg
     4741 gtggcgattc agcagcagcg gcaatgcaac ttggctttga agatgacttc acgcatattt
     4801 ctacaggtgg cggcgcgtca ttagaatact tagaaggtaa agaattaccg ggcattaaag
     4861 caatcgcaaa tctataactc tagatatgag agttgattga acaatagagg gagtgtttaa
     4921 tagtgagaaa accaatcatc gcaggtaact ggaaaatgaa caaaactgta caagaagcga
     4981 aagattttgt acaaacgtta ccagcattac cagatacaaa tgaagttgag gcagtgattt
     5041 gtgcacctac aattcaactt gatgcactga tttcattaac aaaagaaaat gttgcgccag
     5101 gtcttaaaat cggtgcgcaa aacacttatt ttgaagagag tggtgcgttc acaggggaaa
     5161 catctccagt cgcattagaa gcattaggtg tgagctacgt tgtcatcggt cactctgaac
     5221 gtcgtgacct attccacgaa actgatgaag atattaacaa aaaagcgcat gcagtgttta
     5281 accacaacat gacaccaatc atttgtgtcg gtgaatcaga tgaagaacgt gaaagtggta
     5341 aagcaaacga aatcgttgaa gcccaagttg aaaaagcgtt aaaaggttta tcagatgaac
     5401 aaattaaaaa agttgttatc gcctatgaac caatttgggc gattggtaca ggtaaatctt
     5461 caacagcgaa agatgcgaac gaaatgtgtg cagcggtccg tcaaaaaatc gcgaagttaa
     5521 caagtgatga agtagcacaa gcaacacgta ttcaatacgg tggtagtgta aagccaggca
     5581 atattaaaga atatatggct gaaactgata ttgatggcgc attagttggt ggtgcatcac
     5641 ttaaagtaga agattatact caattgttag aaggtgcaaa ataattatgg caaaaaaacc
     5701 tacagcgctt attattcttg atgggtttgc gaatcgagaa gaggtacacg gtaatgctgt
     5761 taaacaagcg cataaaccaa actttgatcg ctactatgag aagtatccta cgactcaaat
     5821 tgaagcaagt ggtttagatg tgggacttcc tgaaggacaa atggggaatt cagaagtggg
     5881 ccatatgaac attggtgccg gacgtattgt gtaccaaagc ttaacacgta tcaataagtc
     5941 tattgaagat ggtgactttt tcgataatga cgtcttaaac aaagcaatgg accatgcatt
     6001 aaacaatcat agcgcattac acatcttcgg tttgctttct gatggtggcg tacacagtca
     6061 ttacaaacat ttattcacgc tgttagaatt agcgaaacgt aaaaacttaa caaaagttta
     6121 tgtccacgca tttttagatg gtcgtgacgt tgatcaaaaa tcagctttaa aatatatcga
     6181 cgaaacagaa gagaaattta aagcattagg tgtaggtcaa tttgcatctg tatcaggacg
     6241 ttactatgca atggaccgtg ataaacgttg ggatcgtgaa caaaaagcat acgatgcaat
     6301 tcgcggattc agtgatgtaa agtacgcatc agcacgtgaa ggtgttcaag caaactacga
     6361 caacaattta actgacgaat ttgttgaacc gtttgtagtt gaaaaccaaa acaatggtgt
     6421 gaacgatggc gatgctgtga ttttctacaa cttcagacca gaccgcgcag gccaaatgtc
     6481 tgaaattttc acaagcaaag cattcgacgg ttttgaagtt gagcgcgtaa atgatttatt
     6541 ctatgcgaca tttacaaaat acaatgatca agtagattca gcagttgtat ttgaaaaagt
     6601 agacttgaaa aatacaattg gtgaagtggc acaagacaat ggtttagtcc aattacgtat
     6661 tgctgaaact gaaaaatatc cacacgtgac atactttatg aacggtggac agaatgaaga
     6721 gtttgaaggt gaacgtcgta ttttaatcaa ttcacctaaa gtcgcaacgt atgacttaaa
     6781 gcctgaaatg agtgcttacg aagtgcgtga tgcattactt aaagagttgg ataaaggtga
     6841 gttagacttg attattctta actttgccaa ccctgacatg gtagggcaca gtgggatgtt
     6901 agcgccaaca atcaaagcaa ttgaggcagt agatgaatgt ttaggtgacg tcgttgataa
     6961 aattttagac atggacggac aagctatcat tacagcggac catggtaact ccgatgaagt
     7021 attaacagat gacgatcaac cgatgacaac acatactaca aacccagtac ctgtcattgt
     7081 aacaaaagaa ggcatcacat tacgtgaaac aggccgactt ggcgatttag caccaacgtt
     7141 acttgattta ttaaatatcg aacaacctga agatatgacg ggtgaatcat taattcaaca
     7201 ttaaatcatt tgagaaacac agatgaatcg ctataatagc attaagtagt caaatataaa
     7261 acggaataaa gtatgttcaa accatattga atatatattt ataaattgat tgaaaaagga
     7321 gatttaacat tatgccaatt attactgatg tatacgctcg cgaagtatta gactcacgtg
     7381 gtaaccctac agttgaggta gaagtattaa cagaaagtgg tgcgttcggt cgcgcattag
     7441 tgccatcagg tgcatcaact ggtgaacacg aagcagtaga attacgtgac ggcgatgcgg
     7501 atcgttactt aggtaaaggt gtagaaaaag cagttgaaaa cgtaaacgaa attattgcac
     7561 ctgaattaat cgaaggcgag ttctcagtat tagaacaagt ttcaatcgat aaaatgatga
     7621 ttcaattaga tggtactgca aacaaaggta aattaggtgc caatgcgatt ttaggtgttt
     7681 ctattgcagt tgcgcgtgca gcagcagact tcttaggtca acctttatac aaatatttag
     7741 gtggattcaa tgcaacagta ttaccaacac ctatgatgaa cattgttaac ggtggttctc
     7801 actcagacgc accaattgca ttccaagagt tcatgatttt accagtgggt gctgagtcat
     7861 tcaaagaagc tttacgttgg ggtgctgaag tattccacgc attagctaaa atcttgaaaa
     7921 aacgcggttt agttactgca gtaggtgatg aaggtggatt cgcgcctaaa ttcgaaggta
     7981 ctgaagatgg cgtagaaaca attcttgaag caatcaaagc agctggttta gagccaggta
     8041 aagacgtatt cttaggtttt gactgtgcat catctgagtt ctatgaaaac ggtgtatatg
     8101 actacactaa attcgaaggt gaaaatgcag cgaaacttac tgctgaagaa caagtagact
     8161 acttagagca acttgttaac aaatacccaa ttattacgat tgaagatggt atggatgaaa
     8221 acgactggga aggttggaag ttattaactg aacgtattgg tgatcgtgtt caattagtag
     8281 gtgacgactt attcgtaaca aatactgaaa tcttatctaa aggtattgag caaggtatcg
     8341 gtaactcaat cttaatcaaa gttaaccaaa tcggtacttt aactgaaaca tttgaagcaa
     8401 tcgaaatggc acaaaaagca ggttacactg cggttgtatc acaccgttca ggagaaacag
     8461 aagatacaac aattgctgac atcgctgttg caacaaatgc tggacaaatc aaaacaggtt
     8521 cattatcacg tacagaccgt attgcgaaat acaaccaatt gttacgtatt gaagatgacc
     8581 tttacgaaac agctaaatat gaaggcttaa aatcattcta caacttaagc aaataagtag
     8641 atgagattat aatgttataa tgagagggta ggacatcgcg ttctaacctc ttttttaaat
     8701 gtccaacatt gattttcttt catcgtttta aactgttata ataggcttat atgatataga
     8761 aggagcaaag aaatgccaca attacaagac acggagctac gtgcccaaca tacaggaaag
     8821 ttacttgctt atctgtcgtt tttattcgcc gtttgtttag tgattcatca agtcatgatt
     8881 gtggatggtc aagtggtgac gtatatgctt gaacattcgg gaaataaagc gactgaaaat
     8941 agtattaatg cgattaataa cagtttacgt tacatcggca ttctatacat actcgcgaat
     9001 gcagcaggtg tggtcgcatt aaaaaatcaa cacccttatt tatggtggtt tatgttagcg
     9061 gttttcattt cacaaatttt caacgcgtta ctcaatccac ccatccttta cacagcgatt
     9121 tttcatgtga aaggtttctt cggtttaatc ccgtatgcgt tagtaatcgt tggatcgctc
     9181 gtactggcag tgatgatgat tagggtgagt gtcaaacgca agtcgacgtt taatcgataa
     9241 agcttgttgt gaatcgttta aatatatgat aaaatagctt tcgtatatga tgaatggagg
     9301 acagtctgat gcatagtttt ttcgtagtat tactcattat tgactgtatc gcgctcatca
     9361 ctgttgtttt attgcaagaa ggtaaaagca atggcttatc aggtgccatt agtggtggtg
     9421 ctgaacaatt atttggtaaa caaaaacaac gtggtgtaga tttatttttg catagagtga
     9481 caattgtact ttcgattatt ttctttgtat taatgttagg tatcagttac ttcaatatgt
     9541 agagtccggc cgttgaaaag tcggactttt ttgtttgtgt acgccgtatc aaaccgatag
     9601 aatagagtgt atgagttatt gaaaggacga gagtttaccg atgaagattc aattaccgaa
     9661 acctttcttt tttgaggaag gaaaacgtgc agtattatta ttacacggtt ttactggcaa
     9721 cagttcagat gtgagacaat taggacgctt tttacagaaa aaagggtaca cctcttatgc
     9781 acctcattat gaaggacatg cggccccacc agaagaaata ttgcaatcga gtcctcatgt
     9841 atggtataaa gatgtgctcg atggttatga atttttagtg gaacacggtt atgacgaaat
     9901 cgctgtcgct ggtttatcat taggtggcgt ttttgcatta aaactaagct taaatcgtac
     9961 tgtaaagggt attgtaacga tgtgctcacc gatgtacatt aaaacggaag gggccatgta
    10021 tgaaggtgta ctagactatg cccgtcaatt taaaaaatat gaaggtaaag atgacgaaac
    10081 gattgagcgc gaaatggcag cgtttcatcc gactgacacg ttgagagagt tacaagggac
    10141 gattcaagaa gtgcgcgaca gtgtggatga agtgattgat cctattttag tgatacaagc
    10201 tgaacaagat gagatgatta atccagattc tgctaatgtc atttatgatg aagtgatgtc
    10261 ggatgaaaaa cgaatttctt ggtacaaaga atctggtcac gtcattacta ttgataaaga
    10321 aaaagaagca gtatttgaag atgtttatca atttttagag tcattagatt ggtctgaata
    10381 aatagccgat aacacatcaa ttttaactat tttctaaaaa gaaaggagga gcaaaatgaa
    10441 tttaaaagaa gagattatcg caatcattaa aagtgcagat tatgaaccca tgtctgtatc
    10501 tgacttccaa gatgcattag gattgagtag tgcggattca tttcgtgacc ttataaagat
    10561 tttggtagag ttagaacaaa caggaatggt gacgcgtacg aaacaagacc gttatcaaaa
    10621 acaacaacag aagacaaatt caggtttagt gagaggaaca ttaagccaaa ataaaaaggg
    10681 atttgccttt ttacgtccag atgatcaaga aatggaagac atctttattc cgccgacaaa
    10741 aatcaaccgt gcaatggatg gtgacgtcgt attagtcgaa gtgaagaagt cgcgcggtga
    10801 ttttcgcaaa ggcaagttcg aaggtgaagt gaaggcgatt gaatcccatt cgattaaaca
    10861 agttgtcggt acattttctg aagcgcgtca tttcggtttc gttgtacctg atgataaacg
    10921 cattatgcaa gatattttcg tgccaaaagg tcaagaactt ggtgcagtag aaggccataa
    10981 agtgttagtg caaattacgc aatactcaga tggtacgaac agtccagagg ggcagatttc
    11041 agcgatttta ggccataaaa atgatccggg tgttgatatt ttatcgatca tttaccaaca
    11101 tggcattgaa attgagtttc ctgatgatgt attgaaagaa gcggaaaacg tacctgaaac
    11161 aatactaccc gatgaactta aaggccgtcg tgatttaaga gatgaactga cgattacaat
    11221 cgatggtgca gatgcgaaag atttagatga cgccattgct gtgaaaaagt tggacaatgg
    11281 caacacggaa ttgacagtca gtattgcgga cgtgagctat tatgtcacag aaggttcagc
    11341 gttagaccga gaagcgtatg atcgtgcgac aagtgtctat ttagtcgacc gtgtcattcc
    11401 gatgattccg caccgattga gtaatgggat ttgttcgtta aatcctgagg tcgaccgttt
    11461 agccatgagt tgtcgaatgg aaattgatgc acaaggtcaa gtggtcaaac acgagatttt
    11521 tgaaagtgtg attcattcta acgcacgtat gacttatgac gcggtaaatc ggatcattac
    11581 agataaagat gcagcgacaa gagcacaata tccagaaatt gtgcctatgt tagatttagc
    11641 ccagacgtta tcacaacaat tgattgcgat gcgtaaaaaa cgtggcgaaa tcgactttga
    11701 tattaaagaa gcgaaagtta tcgtaaacga ggaagggatt ccgaaagaag tcgtgacacg
    11761 tgagcgcggt gaaggtgaac gtttaatcga atcatttatg ttgattgcaa acgaaacagt
    11821 ggcagaacat ttcaatcaaa tggaagtgcc attcatttac cgtattcacg aacagccgaa
    11881 gtcagaacgt ctccgtcagt tttttgattt tattacgaac tttggcatta tggtcaaagg
    11941 aacaggcgaa gatattcatc caagtacgtt gcaaaacatt cacgaagaga ttgctggacg
    12001 acctgaagat atggtcattt caaccatgat gttacgttca atgcaacaag cacgttatga
    12061 tgctgataac ttaggccatt tcggtttagc ggcagattat tatacgcatt ttacgtcacc
    12121 aattcgtcgc tatccagact tgattgttca tcgtttagtg cgtaaatatt taatcgaaaa
    12181 gtcgatggat ggtcgtgcaa tgcatgaatg ggaagaaaag ctcccacaaa ttgctgagca
    12241 tacatcaaat cgtgaacgtc gtgccattga cgcagaacgt gatacggatg aactgaaaaa
    12301 agcggagttt atgattcaac atattggtga tgaatttgaa ggtgtcatca gttctgtcgc
    12361 gaattttggt atgtttgtag agttgcccaa cacgattgaa ggtatggtca acatgcaaaa
    12421 tatgtctgat gactattacc attttgatga gcgccaaatg gcattgattg gtgaacgaaa
    12481 agcgaaagtt taccgcattg gtgatgtcgt aaaggttaaa gtcattcatg ttgatgtgga
    12541 tgaacgtcaa atcgatttcc aaattgtagg tatgccaatt gatgtaagct cgaaacgtga
    12601 aagagaccca cgtggtaaaa cgattcaagc gaaaacaaaa ggcactcaat ttgagaaaac
    12661 tgataaaaag aaaaagcgta aatcacgtaa aggcaaaaat gcgagacaac gtgacaaatc
    12721 aggtaataca caacacaagc cgttttataa aggtaaaaaa gtaaagaaaa aggcacgaaa
    12781 aaagaaaaaa taatttgagg tgaaaccaat gccaaaaaaa tcaggaaaag gcacattagc
    12841 agaaaatcgt aaagcgcgcc atgactataa catcgaggac acgattgaag cgggcattgc
    12901 gttacaaggg acggaaatta aatcgattcg tcgtgggagt gccaatttaa aagatagtta
    12961 cgcacaagtg aaacatggtg aaatcttctt gcataatatg cacattgcgc cttatgaaga
    13021 ggggaaccgt tttaatcatg atccgctacg tgtacgtaaa ctgttattac acaaacgtga
    13081 gattttgaaa ttaggcgaac gtacgcgtga gattggttat tcgattattc cgcttaaatt
    13141 gtatttgaaa cacggcaatt gtaaagtatt attaggcgtt gcacgtggta agaaaaaata
    13201 tgataagcgt caatcattaa aagaaaaagc ggttaaacgt gatatggacc gtgcgatgaa
    13261 acaaaaatat taagaatttg cgaagtatgt caatttttga tatgatataa tgtgctttca
    13321 tataacggaa gcacattgaa tactacgggg acgtttatgg attcgacagg ggtcccccga
    13381 gctcatgaag cgtgtcggag ggttgtcttc gttaccaaca catcagttta taataactgg
    13441 caaaactaac aataatttcg cagtagctgc ctaattgcac tctgcatcac ctaacagcat
    13501 cgcctatgtg ctgttaacgt gattcaactt tagtaggata cgctcgttac tgccgtttga
    13561 agtctggcga gaagagatga atcaaactag catcatgttg gctgtctatc gccttgcatg
    13621 atgtgaaatt gaacgataga ctacacacgt agaaacattt gtatcaggac ctttggacgc
    13681 gggttcaaat cccgccgtct ccactacata taacctaatt gttaatattc ggatttaaaa
    13741 aacaccttac aaacattgat gtataaagtt tgtaaggtgt ttttcattgt tttgatattt
    13801 gggtcatttt atggtcaaaa aatatacgtt gaccaaaaat gttgaccctc tccatacaaa
    13861 ttatatttaa tatattgata taacaacgtt tttaaaagca agtgtcaata aagggtcaag
    13921 tgtatagtac tctagcattg caaccttgct ttttttgtgt tgaatgaaag ctatcatttt
    13981 gtgaacatga ccaatgatgg acaaacctaa cagtcatgtc aatgtagcag gtgtcaaaca
    14041 ggacgagtga gaaacgttta tatgtctgtt tttatataat ctcagcttaa gtaggcaatt
    14101 gtttatataa tttaattatt atattataat tatatatata tagatattct tggacttttg
    14161 gatggaggag aaaagtatga acaagaaacg atttgtcatc agtttattgt ttagcattac
    14221 aatcttattc gttatttcaa gttctacggc tttagcagat catacgctag acccaacacc
    14281 agaccaatta cacaaatcaa gtgaatttaa aggtttgatg gggaatgtga aatatttata
    14341 tgaccgaaat tttatatctg agagtaatgt taaatctatc gatagtttat tggcacacga
    14401 tttaattttc tgtataagag agtctgaaat aaaagaatat ggattagtaa aaacagaatt
    14461 tgcgagtaaa gaattagcac aaaagtatag aaataaacaa gtcgatattt ttggtgcaaa
    14521 ttattatgtt aattgttatt tctctggaaa agaaaagggg aatgaagaag ataatggtaa
    14581 aacctgtatg tatggtggcg taacaaacta tgaaggaaat cacttagata atcacaaatc
    14641 acaaacgatc tatgtaaaag tttttgaaaa tagcaagcat atcattacat ttgaaataca
    14701 agccgacaaa aaactggtta cagcacaaga actggatgca aaggcgagaa aatttttaat
    14761 tgataaactc aatctttatg aatttaaagg atcgccatac gaaacagggt atatcaagtt
    14821 tattgaaaat gacgacaaat cgttctggta tgacttgatg ccgccaccgg gtaataattt
    14881 taatcaatct aagtatttaa caatgtatag tgataataag accgttgaat ctaaagacat
    14941 aaaaattgaa gttcatttaa cgaagaaatg atataaacac aataatatgg ctaatggatt
    15001 tggagcaggc catcaccata agggatacaa tagttaagtt ctaaaagcag gcattacagt
    15061 gcttgctttt cattttgctc aatctgacaa tgtcggtatg atgaaacact gatgtattca
    15121 aaatcgcaaa aaacaaaaag ggtacgatga tgtacatgta ccctttatac attactgaac
    15181 ctttgtacta aacgttcttt atgatggaat gacaagacac tcacattata ttgagatagc
    15241 atggttgtca cagcgtcact gatatcatct tggttatcag taatgatgtt gagtctagca
    15301 ttagcatcaa acgtttgatt tctatacgct tcgacatcgt cccaatcaaa aagtgcgttt
    15361 ttagcagtat tgatattaat attttttatc gctttaacat attcagtggt ttggccagga
    15421 aatacagcgt caaaatgatg agtcaattta gatttgcctt cta
//
LOCUS       DANHOL010000054        15403 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.054, whole genome shotgun sequence.
ACCESSION   DANHOL010000054 DANHOL010000000
VERSION     DANHOL010000054.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 15403)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15403)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15403
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.054"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(122..1144)
                     /gene="tsaD"
                     /locus_tag="PTC08_001195"
     CDS             complement(122..1144)
                     /gene="tsaD"
                     /locus_tag="PTC08_001195"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HDK5682708.1"
                     /translation="MNEQTKILALETSCDETSVSVIENGQTILSNSVLSQIESHQRFG
                     GVVPEVASRHHVENITVMIEEALQQAHTSIEDVDAVAVTQGPGLIGALLVGVNAAKAL
                     AFANDKPLIPVHHIAGHVYANQLQSGLKFPLIALIVSGGHTELVYMENHLQFEVIGET
                     RDDAVGEAYDKVARKIGLPYPGGPAIDRLAAQGEDTYDFPRVWLEPDSYDFSFSGLKS
                     AVINKLHQLEQKGDPIIPENVATSFQNSVVEVLVGKAMRACEAYGVKQLIVAGGVASN
                     RGLRHALEVATAEKGIELAIPEPKLCTDNAAMIGAAAHEIYLKGIRGDMALNGQSSMD
                     IEMYRD"
     gene            complement(1137..1562)
                     /gene="rimI"
                     /locus_tag="PTC08_001196"
     CDS             complement(1137..1562)
                     /gene="rimI"
                     /locus_tag="PTC08_001196"
                     /EC_number="2.3.1.266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002482770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S18-alanine
                     N-acetyltransferase"
                     /protein_id="HDK5682709.1"
                     /translation="MSHEDVPEVFDLEQASFQHSSWTIDAFYYELEQNNFAHYFVLEY
                     DQRIIGYLGLWVVVDQAQVTTIAIDAAYQGHGLGQMLLKYGMNYVGSIATVMSLEVRV
                     DNVVAQHVYRKLGFQFGGKRKNYYGDGEDALVMWVNLYE"
     gene            complement(1586..2242)
                     /gene="tsaB"
                     /locus_tag="PTC08_001197"
     CDS             complement(1586..2242)
                     /gene="tsaB"
                     /locus_tag="PTC08_001197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     dimerization subunit type 1 TsaB"
                     /protein_id="HDK5682710.1"
                     /translation="MYSLLIDSANQPLSVAIMQEGHVLITHTTTIKRNHSVQLMPLIE
                     WLLQQAQLKPKDLDEIIVTEGPGSYTGLRIGVTTAKTLAYTLNIRLYGVSSLKAIAAQ
                     IQYSDAYIIPVINARRQHVYAGVYQWQQGELVNVMSDQYIPLDRLIEQWTTNDNVIFV
                     GEDVAQFETELAPFKRLSAPPRADQMYPHKGAPRDIHTFTPQYLKLSEAEQNWLNQQK
                     "
     gene            complement(2223..2681)
                     /gene="tsaE"
                     /locus_tag="PTC08_001198"
     CDS             complement(2223..2681)
                     /gene="tsaE"
                     /locus_tag="PTC08_001198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     ATPase subunit type 1 TsaE"
                     /protein_id="HDK5682711.1"
                     /translation="MRIKNKTAMQAFANQLATYLKAQDVLLLDGDLGAGKTTLSQFIG
                     QALGVKRPISSPTFNIIKSYRGTHLKFHHMDCYRLEDSDEDLGFDEFFEDEAVTVVEW
                     SQFIQDYLPPHYLKINIQTINETERELSFEAHGSHFEEIKEAIEHVQFTD"
     gene            3225..4913
                     /gene="ilvD"
                     /locus_tag="PTC08_001199"
     CDS             3225..4913
                     /gene="ilvD"
                     /locus_tag="PTC08_001199"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HDK5682712.1"
                     /translation="MRSDMIKKGDHQAPARSLLHATGQIKSPTDMDKPFIAICNSYID
                     IVPGHVHLRELGDIAKEAIREAGGVPFEFNTIGVDDGIAMGHIGMRYSLPSREIIADA
                     AETVINAHWFDGVFYIPNCDKITPGMLMAAMRTNVPAIFCSGGPMKAGLSAQGKALTL
                     SSMFEAVGAFKEGAMTKEEFLDMEQNACPTCGSCSGMFTANSMNCLMEVLGLALPYNG
                     TALAVSDQRREMIRAAAKQLVENVKNDLKPRDIVTKEAIDDAFALDMAMGGSTNTVLH
                     TLAIAKEAGIDYDLTRINEIAKKTPYLSKIAPSSSYSMDDVHQAGGVPAIINELMKKE
                     GVLHPDRITVTGKTLRENNQDKAITNDVVIRRLDNPYDQQGGLSILYGNIAPDGAVIK
                     VGGVDPSIKTFKGKAICFDSHDEAVEAIDNHTVRAGHVVVIRYEGPKGGPGMPEMLAP
                     TSSIVGRGLGKDVALITDGRFSGATRGIAVGHISPEAAAGGPIGLIEDGDDITIDLVN
                     RDLTLHVDDVVLAERQAHRQPFKAKVKTGYLARYTALVTSANTGGVMQVPEDLL"
     gene            4934..6688
                     /gene="ilvB"
                     /locus_tag="PTC08_001200"
     CDS             4934..6688
                     /gene="ilvB"
                     /locus_tag="PTC08_001200"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthetic-type acetolactate synthase large
                     subunit"
                     /protein_id="HDK5682713.1"
                     /translation="MTQTHHTVPQNHNESEETTLQPDTNALKSGAQLLVDAFLEEGVE
                     YIFGYPGGAVLPLYDTFYNEQIKHILYRHEQGATHAAEGYARVSGKPGVVVVTSGPGA
                     TNAITGIADAYSDSLPLIVITGQVATPGIGKDAFQEADILSMTTAITKHNYQVNDVKE
                     IPRIIKEAFHVANSGRKGPVVIDFPKDMGILSTDSPVDNTVNTPGYYVNTKPDIDEIQ
                     KLNDYLKTSERPVILAGAGIHFSKSNSQLRQLVDKYQIPVVTTLHGLGAIPYDDPHFL
                     GMGGMHGSYASNMALTECDLLINFGSRFDDRLASNPDEFAPNATIVHVDIDPSEIDKI
                     IKTDLGIVADVKNVIEALLKYDTEKINHDAWLTTIKGYQDKHPFKYVDDPLEKFCKPQ
                     RAIEYIGEITQGKAYVATDVGQHQMWVAQFYPFQTYGQLITSGGLGTMGFGIPAAIGA
                     KFAKPNETVVAFVGDGGFQMTNQEMALLNEFNLNIKIVLINNGTLGMVKQWQDKFFNQ
                     RFSHSVFNDQPDFMKMSEAYGVKGFLIDDPKCLEAQIDAAFLHNGPALIEIRISPVEP
                     VLPMVPSGKANHEMEGLL"
     gene            6685..7158
                     /gene="ilvN"
                     /locus_tag="PTC08_001201"
     CDS             6685..7158
                     /gene="ilvN"
                     /locus_tag="PTC08_001201"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HDK5682714.1"
                     /translation="MRRTFKLRVFDKAGTLNRLTSLFVRRQINIVSITATPTLDEGIS
                     EITFIAEVPDDEKQRTIIQQLIKQVNTLTVEDITNINTFNRELLLIKLKKPIPQQQFD
                     KVLQPYDALVSILKENGQYLYLQATGPQYTLNHLLDDLSSFHIEQVARTGTAGII"
     gene            7193..8197
                     /gene="ilvC"
                     /locus_tag="PTC08_001202"
     CDS             7193..8197
                     /gene="ilvC"
                     /locus_tag="PTC08_001202"
                     /EC_number="1.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketol-acid reductoisomerase"
                     /protein_id="HDK5682715.1"
                     /translation="MTKVYYDSSVEKDVLQGKKIAVIGYGSQGHAHAQNLKDNGYDVV
                     IGIRPGRSFDQAEEDGFNVYTVAEAVKQADVVMVLLPDEIQGDVYKNEIEPNLEAGNA
                     LAFAHGFNIQFDVIQPPSDVDVFLVAPKGPGHLVRRTFVEGSAVPALFAVQQDASGEA
                     RDLALSYAKGIGSTRAGVLETSFKEETETDLFGEQAVLCGGVTRLIQSGFEVLVEAGY
                     QPEIAYFEVLHEMKLIVDLMYEGGLENMRYSISNTAEFGDYVSGPRVITEETKENMKA
                     VLKDIQDGTFSTRFIKDNEDGFKSFKQMREAQQGHQITAVGQSLREMMPFIKSKSIQK
                     "
     gene            8219..9751
                     /locus_tag="PTC08_001203"
     CDS             8219..9751
                     /locus_tag="PTC08_001203"
                     /EC_number="2.3.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HDK5682716.1"
                     /translation="MSSHIQIFDTTLRDGEQTPGVSFSFEERLKLAEQLEKWGVDVIE
                     AGFPASSQGSFESVQAIARTLKHTTVTGLARCLKSDIDAVYEATKDAVSPSIHVFIAT
                     SPIHLESKLHMTESEVLEAITTHVSYAKERFDIVQFSPEDATRTPLPFLIQSVQTAVD
                     AGATVINIPDTVGYTYPTEYGNIFKALTEKIKSDVPITYSAHCHDDLGLAVANSMAAI
                     ENGATRIEGTVNGIGERAGNTALEEVVLGLYVRQDHYQIQTQIQLELTKQTSDMVARY
                     AGLRVPRNKAIVGKNAFSHESGIHQDGFLKNPETYEIMTPKLVGVKKTELPLGKLSGK
                     HAFQDKLKQLGYDIDLEEQKVLFKAFKGIADKKKHVTDQDIHALIQNSEHDKHVAYHL
                     ETLQLQFVSNGLQSAVVVVRDNDDQHYQDSSIGTGSIVAIYNAVDRIFNVESVLLDYR
                     IDAVSEGRDAQAEVHVQVEVNGQEYVGVGFDHDILYASCKAYVEAISKSVQSIQKEGV
                     VQ"
     gene            9748..10797
                     /gene="leuB"
                     /locus_tag="PTC08_001204"
     CDS             9748..10797
                     /gene="leuB"
                     /locus_tag="PTC08_001204"
                     /EC_number="1.1.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydrogenase"
                     /protein_id="HDK5682717.1"
                     /translation="MTFKIVALPGDGIGPEIMSGTLDCLDALASQVDFDYMVDSYAMG
                     GCAIDQYGTPLPDATLDACQRADAILLGAIGGPQWTNPQCRPEQGLLNLRKALNLYAN
                     IRPTRVTTDMAYLSPLKQSIVENTDLVIVRELTSGIYFGEPRYLKDDEARDSMTYTKE
                     EIIRIAHVGFQLAQSRRQKLTSVDKENVLASSQLWRRTVNEVAEQYPDVTVEHLLVDA
                     CSMHLIKRPADFDVIITENLFGDILSDEASMLPGSLGLSPSASFSEGGPKLYEPIHGS
                     APDIAGQNKANPFGMLLSLAMCLRESAERDDMATIIETTVDTLIAKGITTADLGGQYG
                     TTDIFKHFKAFIKGA"
     gene            10801..12174
                     /gene="leuC"
                     /locus_tag="PTC08_001205"
     CDS             10801..12174
                     /gene="leuC"
                     /locus_tag="PTC08_001205"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HDK5682718.1"
                     /translation="MGRTLFDKIWDQHTITGQQGEPQLLYIDLHLIHEVTSPQAFEGL
                     RMQKRTLRRPDLTFGTLDHNVPTVDIFNIKDDIANKQIQALQQNCKDFNVTLFDMGSD
                     EQGIVHMVGPEMGLTQPGKTIVCGDSHTATHGAFGAIAFGIGTSEVEHVFATQTLWQT
                     KPKNLKINVTGQLPKGVYAKDIILHLINQHGVDFGTGYALEFAGETIRNLSMEGRMTI
                     CNMAIEAGAKYGLIQPDNTTFAYLEGRRYSQNIEDKLDDWRKLYSDDDAQFDKIIELD
                     VTALEPQVTWGTSPEMGVSFSTPFPEIQNVNDERAYQYMGLKPGQLATDIPLGYVFLG
                     SCTNARISDLVEASHIVKGNQVHENITAIVVPGSRQVKKEAEAMGLDTIFKDAGFEWR
                     EPGCSMCLGMNPDQVPAGVHCASTSNRNFEGRQGKGARTHLVSPAMAAAAAIHGRFVD
                     VRKVVEA"
     gene            12174..12746
                     /gene="leuD"
                     /locus_tag="PTC08_001206"
     CDS             12174..12746
                     /gene="leuD"
                     /locus_tag="PTC08_001206"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HDK5682719.1"
                     /translation="MEIKAITQYSGKTVPLFHDNIDTDQIIPKVHLKRISKTGYGPFL
                     FDEWRYLEDGSDNPNFVLNQPEYEGASILITGDNFGCGSSREHAAWALKDFGFQVIIA
                     ESFSDIFYMNCTKNALLPIRLDRASREAIARYPEITIDLPQQIIQTPEQNYHFDIDET
                     WKEKLVNGLDDIAITLKYEALIKDYELKHT"
     gene            12759..14027
                     /gene="ilvA"
                     /locus_tag="PTC08_001207"
     CDS             12759..14027
                     /gene="ilvA"
                     /locus_tag="PTC08_001207"
                     /EC_number="4.3.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine ammonia-lyase IlvA"
                     /protein_id="HDK5682720.1"
                     /translation="MSVKTTPVQAQDVEDAFLRLNTIVKETPLEKDHYLSLKYDCNVY
                     LKREDLQWVRSFKLRGAYNAIAVLPEEKRNQGITCASAGNHAQGVAFTAKYLNLHAVI
                     FMPVTTPKQKVNQVQFFGGDNVEIKLEGDTFDDCLKSALSYTEQHDMTFIDPFNNVHT
                     IAGQGTLAKEMIEAAKTDNITIDYVFGAIGGGGLMSGVATYFKAHSPSTKLIGVEPLG
                     ASSMYQSVQAGEVVTLDNIDKFVDGASVARVGEITFNICRKALDDYVQIDEGAVCSTI
                     LDMYSKQAIVAEPAGALSVSALEQYQDQIKGKNVVCIVSGGNNDINRMKEIEERSLLY
                     EEMKHYFILNFPQRPGALRQFVNDVLGPHDDITKFEYLKKSSQNTGTVIIGIQLQNRA
                     DLDTLIRNVNQFDPKNIYINENKMLYSLLI"
     gene            complement(14097..15281)
                     /locus_tag="PTC08_001208"
     CDS             complement(14097..15281)
                     /locus_tag="PTC08_001208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDK5682721.1"
                     /translation="MTCNAYKLIIFGFISTIGSSVFSFACAFHILKNTENSYLYSIYL
                     TLIVITTILSTPISGVFIDSVNNKRLILYSQLSSVAALIIFSLLYDDNVYMIICLGLL
                     LTVPDGINSVIIQKNLQRIVTDNLERVISIRQTVSTLTSFVSPIIGGIVIAFIPLQVI
                     GMMNMLTEAISIILIQSLPIINHQQMKSQFVHSFKEGVQYLVKKKEIMTFLVCAMLNN
                     FLVNVIVVGVPIIAIQQLHLKSTQFGMIESGYTIALFLVSFVMSIYPVKRGVTLFYKI
                     GILIEIVTLFSLGVFLLYPHQNLTSFIFLIATYMLIGVSLPIINTPYGVYLQKAVEDE
                     YKGRVFSLNSSIAQAIIPVSLSFFGFILNDNAAQVFMIDAILMLVVLTGFSIAMRKYQ
                     FD"
BASE COUNT         4823 a         3049 c         3134 g         4397 t
ORIGIN      
        1 gggactggga aaaccaaata tcccaatccc ttttgattaa attttgttag aaagcgcaga
       61 atggttcagc aatctccatg aatctctgca taattgaaat attcaagacc tacttaacaa
      121 cttaatctcg gtacatctcg atatccatac tactttgacc gttcaacgcc atatctccac
      181 gaattccttt taaataaatt tcatgcgctg ctgcaccaat catcgccgca ttatcagtac
      241 ataatttggg ctctggaatt gcaagctcta tccctttctc agcagttgcg acttctaacg
      301 catgacgtaa acctcgatta cttgcaacac caccagcaac gatgagttgt ttgacaccat
      361 acgcttcaca tgcacgcatt gcttttccta cgagcacttc aacaacacta ttttggaagc
      421 ttgttgcgac attttctgga ataatcggat cacctttttg ttctaattga tgtaatttat
      481 taatgactgc actctttaaa ccactaaaac taaagtcata gctatccggt tctaaccaca
      541 ctcgtggaaa gtcgtacgtg tcttcccctt gagcggcaag tcggtcaatg gcagggccac
      601 ctggatatgg taagccaatt ttacgtgcaa ctttatcata cgcttcacca actgcatcgt
      661 cacgtgtttc ccctatcact tcaaattgca aatgattttc catgtagaca agctctgtat
      721 gaccacctga aacaattaag gcaatcaatg ggaatttcaa gccactttga agttgattgg
      781 cataaacatg accggcaata tgatggactg gaatgagcgg cttatcattc gcaaaagcca
      841 gtgccttcgc agcattcaca ccaacgagta acgccccaat cagtccaggt ccttgtgtaa
      901 ccgcgacagc atccacatct tcaattgatg tatgggcctg ttgtaacgct tcttcaatca
      961 tgaccgtaat attttcaacg tgatgacgac tcgccacttc tggaacgact cctccaaaac
     1021 gttgatgact ctcaatttgg cttaatacgc tgttacttaa aatcgtttga ccattttcaa
     1081 tgacactcac acttgtttcg tcacaactcg tttcaagtgc aagaatcttt gtttgttcat
     1141 tcatataaat tcacccacat gactaatgca tcctctccat caccataata attttttcgt
     1201 ttgcctccaa attggaaacc gagctttcga tacacatgtt gtgcaacgac attatcgaca
     1261 cgtacttcta aactcatcac tgtcgctata gaccccacat agttcatccc atattttaat
     1321 agcatttgtc ctagtccatg accttgatag gctgcatcta tcgcaatagt tgtcacttgt
     1381 gcttgatcga ccacgaccca taatcctaag taaccgataa tgcgttggtc atattcgagc
     1441 acgaaataat gtgcaaagtt attttgttcc agttcataat aaaaggcatc aatcgtccat
     1501 gaactatgtt gaaaactcgc ctgctctagg tcaaacactt caggcacatc ttcatgggac
     1561 atacgtctaa tttgaagctg atcttctatt tttgttgatt cagccaattt tgttccgcct
     1621 ccgatagttt taaatattgc ggtgtaaagg tatgaatatc gcgtggcgct cctttatgtg
     1681 ggtacatttg atctgctcga ggaggcgcac ttaatcgttt aaagggtgct aattccgttt
     1741 caaattgtgc cacatcttca cctacaaaga taacgttgtc gtttgttgtc cattgctcaa
     1801 ttaacctatc gagtggtata tattgatccg acatcacatt aacaagttca ccttgttgcc
     1861 attgataaac accggcataa acgtgttgtc gtctcgcatt gatgactgga ataatatacg
     1921 catcagaata ttgaatttgt gctgcaatcg cttttaacga tgacacgcca tacaatcgaa
     1981 tattcaatgt gtaagcaagt gttttcgctg tcgtcacccc gatacgtaat cctgtatacg
     2041 aaccaggacc ttctgtgaca ataatttcat ctaaatcttt cggcttcaat tgtgcttgtt
     2101 gtaataacca ttcaatgagt ggcatgagct gcaccgagtg attacgtttt atcgttgtcg
     2161 tatgcgttat caatacgtga ccctcttgca taatcgctac tgataatggc tgattggcac
     2221 tatcaatcag taaactgtac atgttcgatg gcctccttta tctcttcaaa atgtgagcca
     2281 tgtgcttcaa aactcagctc tcgttctgtt tcgtttatcg tttgaatgtt gattttcaaa
     2341 taatgtggtg gcaaatagtc ttgaataaat tgactccatt ccactacagt caccgcttca
     2401 tcctcaaaaa actcatcaaa tcctaagtct tcatcagaat cttctaatcg ataacaatcc
     2461 atgtgatgaa atttcaaatg ggtacctcga tatgatttga taatattaaa agtcggtgaa
     2521 ctgataggac gttttacacc taacgcctgt ccgataaatt gacttaaagt tgtttttcca
     2581 gcacctaggt cgccatctaa taacaataca tcttgtgctt tgagataagt tgcaagttga
     2641 ttcgcaaatg cttgcatcgc tgttttgttt ttaattctca tttcgttcgc actcctgact
     2701 cgattttcta acctattgta acaaattttt atcattttga ccttatcaac ttactggaac
     2761 atttaaagct caccactaat ggaatttttt gcttcaccgc gcacctaaaa tattttcaga
     2821 atttttttga tttactgttg acttcttttc taatataagg taaattaatg acatctaatt
     2881 tttagacaat tctttctatt cttaacatta aagtgcgttt aatgttaatt cacacatcta
     2941 atcgtctaca ttgtatacga gatgaacagt taacgatgta gcgagattga cccattcacg
     3001 acagaaaagg agcgtatgta caatgaaaag acatgcaatg atgacccata ctgtacaaaa
     3061 tcataatatt atcattttat tattacgctc aggactggag ctttagtagc catattacta
     3121 aacgcttaag tcctatttct agttgaatgg gacttacaag gtacgtccca gattcaattt
     3181 tggggcgtac cttttttatt tgaaaaaccg aggaggcatt tgagatgaga agtgacatga
     3241 ttaaaaaagg agatcaccaa gcaccggcga ggagtttgtt acatgcaaca ggtcaaataa
     3301 aatcccctac tgacatggac aaaccattta tcgcaatttg taattcttat attgatatcg
     3361 ttccgggaca cgtgcattta cgcgaacttg gtgatatcgc gaaagaggct attcgtgaag
     3421 caggcggtgt cccatttgaa tttaatacga ttggtgtgga tgatggtatc gcgatgggcc
     3481 atatcgggat gcgttattca ttaccgagtc gtgaaattat tgcagatgcg gctgaaaccg
     3541 ttattaatgc acactggttt gatggggttt tttacattcc gaactgtgac aaaattacac
     3601 cagggatgtt gatggccgcg atgagaacga acgtccctgc gatattctgt tctggtggtc
     3661 caatgaaagc cggtttgtca gctcaaggga aagcactcac tctctcatct atgtttgaag
     3721 cggttggtgc atttaaagaa ggcgcgatga ctaaagagga atttttagat atggaacaaa
     3781 atgcatgtcc gacttgtggt tcttgttcag gcatgttcac agcgaactcg atgaactgct
     3841 taatggaagt attaggttta gccctaccat acaacgggac agcactagca gtcagtgatc
     3901 aacgtcgtga aatgattcgt gccgctgcga aacaacttgt tgaaaatgtt aaaaatgact
     3961 taaaaccgcg tgatatcgta acaaaagaag caattgacga cgcatttgca ttagatatgg
     4021 cgatgggtgg ttctacaaat actgtactgc acacacttgc catcgctaaa gaagcaggca
     4081 ttgattatga tttaacacgt attaatgaaa ttgcgaaaaa gacaccttat ttatctaaaa
     4141 ttgctccaag ttcatcttat tctatggatg atgtccatca agcgggcggt gtcccggcca
     4201 tcattaatga actgatgaaa aaagaaggtg tacttcatcc agatcgtatc actgttactg
     4261 gtaaaacttt aagagaaaat aaccaagata aagcaattac gaatgatgtc gtgattcgtc
     4321 gtttagacaa tccatacgat caacaaggtg ggctgtcaat tctttacggt aatattgctc
     4381 cagatggtgc ggtgattaaa gtcggtggtg ttgatccatc tattaagacc tttaaaggaa
     4441 aagcgatttg ttttgacagt catgatgaag cggttgaagc gattgataac catacggtgc
     4501 gtgctggaca tgtcgttgtc attcgctatg aaggtcctaa aggtggacca ggcatgccag
     4561 aaatgttagc ccctacttca tctatcgtcg gacgcggtct tgggaaagat gttgcattga
     4621 ttacagatgg ccgcttttca ggtgccacaa gaggtattgc agtcggtcac atttcaccag
     4681 aagctgctgc aggaggtcca atcggcttaa ttgaagatgg tgatgacatt acgattgatc
     4741 ttgtgaatcg cgacctcact ttacatgttg atgacgtggt actcgcagaa cgtcaagcac
     4801 atcgtcaacc attcaaagcg aaagtgaaaa cgggttatct cgcacgttat acagcattag
     4861 tgacaagcgc caatacaggt ggcgtaatgc aagttcctga agacttactt taataaaaat
     4921 ggaggggttc caaatgacgc aaactcatca tactgtgcca caaaatcaca atgagtcaga
     4981 agaaacaaca ctgcaacctg atacgaacgc tttaaagtct ggtgcacaat tgttagttga
     5041 tgcattttta gaagaaggcg ttgagtacat attcggttat cctggcgggg ctgtactccc
     5101 cctttacgac acattttaca acgagcaaat caagcatatt ctctaccgtc atgaacaagg
     5161 tgcaacccat gcggcagaag gttatgcgcg cgtaagtggt aaaccaggtg tcgtagtcgt
     5221 aacgagtggt cctggagcaa cgaatgcgat tacaggcatt gcagatgcat acagtgattc
     5281 gctgccactc atcgttatta ctggtcaagt ggcgacacca ggcattggta aagacgcttt
     5341 ccaagaagca gacattttat caatgacaac ggcgattacg aaacataatt atcaagtcaa
     5401 cgatgtgaaa gaaattccgc gcattattaa agaagctttt catgtcgcaa attctggtcg
     5461 taaaggaccg gtagtgattg attttccgaa agatatgggc attttatcaa cagattcacc
     5521 cgtcgataat acagtcaata cacctggcta ttacgtcaat acaaagcctg acattgatga
     5581 aattcaaaaa ctgaatgatt atttaaaaac gtcagagcgc cctgtcattt tagctggtgc
     5641 agggattcat ttctctaaat cgaattcgca attacggcag ttagtcgaca aatatcaaat
     5701 tcctgtcgtg acgacgcttc acggtttagg tgcgattcct tatgatgacc cccacttctt
     5761 aggtatgggt ggcatgcacg gttcctatgc aagtaatatg gcattgacgg aatgtgactt
     5821 actcattaac tttggctcgc gatttgatga ccgtttagca agtaatccag atgaatttgc
     5881 gccaaatgca accattgtac atgtcgatat tgacccgtca gaaatcgaca aaatcattaa
     5941 aactgacctt ggtattgtag cagatgttaa aaatgtgatt gaagcgttat taaaatatga
     6001 tacggaaaaa atcaatcacg atgcatggct aacaacgatt aaaggctatc aagacaaaca
     6061 tccattcaaa tatgtcgatg atccgcttga aaagttttgt aagccccaac gtgcaattga
     6121 atacattggt gaaattacac aaggtaaagc ttatgtagca acagatgtcg gccaacacca
     6181 aatgtgggtg gctcagttct accctttcca aacgtacggt caactgatta caagtggtgg
     6241 actcggaaca atgggattcg gtatcccagc cgctatcggt gcaaaatttg caaaaccaaa
     6301 tgaaactgtc gtagcatttg tcggtgatgg cggttttcaa atgacgaacc aagaaatggc
     6361 attgctgaac gaatttaact taaatattaa aatcgtattg attaacaacg gtacgctcgg
     6421 aatggtgaaa caatggcaag acaaattctt taaccaacgt ttttcacatt cagtatttaa
     6481 cgatcaacct gacttcatga aaatgagtga agcctatggt gttaaaggct ttttaatcga
     6541 tgacccgaaa tgtttagaag cgcaaatcga tgcggcattt ttacacaatg gtcctgcatt
     6601 aattgaaatt cgcatttcac cagtagaacc tgtattgcct atggtaccaa gtggcaaagc
     6661 gaaccatgag atggagggac tgttatgaga cgaacattca aattacgcgt tttcgataaa
     6721 gccggcacac tcaaccgatt aacaagttta ttcgtaagac gccaaatcaa tatcgtgagt
     6781 attactgcca caccgacgtt agatgaaggg atttcagaaa tcacgtttat cgctgaagta
     6841 cctgatgacg aaaaacaacg tacgatcatt caacagttaa ttaagcaagt caatacgtta
     6901 acagttgaag atattacgaa cattaatacg tttaatcgcg aattactact cattaaacta
     6961 aaaaagccga taccacaaca gcaattcgac aaagtattac aaccgtatga tgcgctagtt
     7021 tctattttga aggaaaacgg tcaatatttg tatttacaag ctactggccc gcaatacaca
     7081 ttgaaccacc ttttagacga tctatcatca tttcatattg agcaagttgc acgtactggt
     7141 acagctggaa ttatttgaaa aatcaaaaaa tattatttgg aggcatttta atatgacaaa
     7201 agtttattat gattcatcag tagagaaaga tgtattacaa ggtaaaaaaa ttgcggttat
     7261 tggttatggt tcacaaggtc atgcccacgc acaaaactta aaagacaatg gctatgatgt
     7321 cgtaatcggt attcgccctg gacgttcatt cgaccaagca gaagaagatg gttttaatgt
     7381 ttacaccgta gcagaagctg tcaaacaagc cgatgtggtg atggtgttac tccctgatga
     7441 aattcaaggt gacgtgtaca aaaatgaaat cgagcctaac ttagaagcag gcaacgcatt
     7501 agcatttgcg cacggcttta atattcaatt tgacgtgatc caaccaccga gtgatgtaga
     7561 tgttttcctc gttgcgccaa aaggtccagg tcatttagtt agacgtacat ttgttgaggg
     7621 ttcagccgta ccagcattat tcgctgtgca acaagatgca tcgggtgaag cacgtgattt
     7681 ggcattaagt tacgcgaaag ggatcggttc aacacgtgca ggcgtattag aaacatcatt
     7741 taaagaagaa actgaaacgg atttattcgg tgaacaagct gtcctttgtg gtggcgtgac
     7801 acgtctcatc caaagcggtt ttgaagtgtt agtggaagca ggttaccagc cagaaatcgc
     7861 ctacttcgaa gtgttacatg aaatgaaact gatcgttgac ttaatgtatg agggcggact
     7921 tgaaaacatg cgttattcta tttcgaacac tgcagaattt ggtgactacg tatcaggtcc
     7981 acgtgtcatt acagaagaaa cgaaagaaaa tatgaaagct gtattaaaag atattcaaga
     8041 cggtacattt agcactcgtt tcattaaaga taatgaagat ggctttaaat catttaaaca
     8101 aatgcgtgaa gcacaacaag gacatcaaat tacagcagtc ggtcaatctt tacgtgaaat
     8161 gatgccattt attaaatcga aaagcattca aaaataattt tttaaggagt gaatgaaaat
     8221 gtctagtcat attcagattt ttgatactac actacgcgat ggcgaacaaa caccaggcgt
     8281 cagcttttcc tttgaagaac gattaaaact ggccgaacaa ctcgaaaaat ggggtgtcga
     8341 tgttattgag gctggctttc ccgcttcaag tcaaggcagc tttgaatctg tacaagcaat
     8401 cgctcgaacg ttaaaacata ccactgttac aggtttagca cgttgcttaa agtctgatat
     8461 cgatgccgta tacgaagcga caaaagatgc cgtttcccct tctatccatg tctttattgc
     8521 aacgagccct attcacttag agtcaaagct tcatatgacg gaatctgaag tgctcgaagc
     8581 aataacgaca catgtgagtt atgcaaaaga acgttttgat atcgttcaat tttcaccaga
     8641 ggatgcgaca cggacaccgt tgccattctt aatccaaagt gtacaaactg cagtagatgc
     8701 aggggcaact gttatcaata ttcctgatac ggtgggctat acgtatccaa ctgaatatgg
     8761 caacattttc aaagcactca cagaaaaaat caagtcggat gtcccaatta cgtacagtgc
     8821 ccattgtcat gatgaccttg gcttagctgt agcaaatagc atggctgcca tcgaaaatgg
     8881 tgcgacacgt attgaaggaa cggtcaatgg gattggtgaa cgtgccggaa atactgcact
     8941 tgaagaggtc gtattaggtt tatacgtccg tcaagatcat tatcaaattc aaacgcaaat
     9001 tcaactcgaa ttgacgaagc aaacttctga tatggtcgca cgctatgctg gattgagagt
     9061 accacgtaat aaagcgattg tcgggaaaaa tgcgtttagt catgagtctg gtatacatca
     9121 agatggtttc ttgaaaaacc cggaaacgta cgaaattatg accccgaaac tcgttggtgt
     9181 gaaaaaaacg gaactgccac tgggaaaatt atcaggtaaa catgcgttcc aagataaatt
     9241 gaaacaactc ggatatgaca ttgatttaga agagcaaaaa gtattgttta aagcgtttaa
     9301 agggattgcc gacaagaaaa aacacgtcac tgatcaagat attcacgcat tgattcaaaa
     9361 tagtgagcat gataaacatg tcgcctacca tcttgaaaca ctacagcttc aatttgtatc
     9421 gaatggcctt caaagtgctg ttgtggtcgt tcgcgataat gatgatcaac attatcaaga
     9481 ttctagtatt ggtaccggct ccattgttgc gatttataat gcggtcgatc gtattttcaa
     9541 tgtcgaatct gtactgttag attatcgtat tgatgccgtg tctgaaggcc gcgatgcaca
     9601 agctgaagtt catgtacaag tagaagtcaa tggccaagaa tatgtaggtg ttggttttga
     9661 ccacgatatt ttatatgcct catgcaaagc ctatgttgaa gcgataagta aatcggtgca
     9721 atccattcaa aaagaaggtg tcgtacaatg acttttaaaa ttgtagcttt acctggcgat
     9781 ggcattggac cagaaattat gtcaggtaca ttggattgtt tggacgcact tgcatctcaa
     9841 gttgattttg attatatggt ggacagttat gcgatgggag gttgtgccat tgatcaatat
     9901 ggcacgcccc tacctgatgc aacattagat gcttgtcaac gtgcagatgc tattttactc
     9961 ggtgcgattg gtggccctca atggacgaac ccacaatgtc gtcctgaaca aggtttactg
    10021 aatttgcgaa aagcattgaa tttatatgcc aatattcgac ccacacgtgt gacaacagac
    10081 atggcgtatt tatcaccgtt aaagcaatcc attgtcgaaa ataccgacct tgttatcgtt
    10141 agagagttga cgagtggcat ctactttggc gagccacgct acctgaaaga cgatgaagca
    10201 cgtgattcaa tgacttatac gaaagaggaa attatacgca ttgcgcatgt cggttttcaa
    10261 ttggctcaat cacgtcgcca aaagctcaca tctgttgata aagaaaatgt acttgccagc
    10321 agtcaattgt ggcgtcgtac tgttaatgaa gtcgctgaac aatatcctga cgttacggtc
    10381 gaacatttac ttgttgatgc atgtagtatg catttaatca aacgacctgc tgattttgat
    10441 gttatcatca ctgaaaattt atttggcgat attctaagtg atgaagcgtc gatgctacct
    10501 ggttcactag gactctcccc ttccgcaagt tttagtgaag gtggaccaaa attatacgaa
    10561 ccgattcatg gctcagcacc tgacatcgcc ggtcaaaata aagccaatcc gtttggcatg
    10621 ttgttgtcac tcgctatgtg tttacgagaa tcagctgaac gagatgatat ggcaacaatt
    10681 attgaaacaa cggtcgatac attaatagct aaagggatca caacagctga tcttgggggg
    10741 caatacggca ctacggacat tttcaaacat tttaaagcat tcattaaggg ggcataacga
    10801 atggggcgta cacttttcga taaaatttgg gaccaacata cgattaccgg gcaacaaggt
    10861 gaaccgcaat tgttatacat tgatttgcat ttgatacatg aggtgacgtc accgcaagca
    10921 tttgaagggc tcagaatgca aaaacgaact ttacgaagac ctgatttaac gtttggcaca
    10981 ttagatcaca atgtaccaac ggtcgatatt ttcaacatta aagatgatat cgcaaacaag
    11041 caaattcaag cgttacaaca aaactgtaaa gactttaacg tcacattgtt tgatatgggc
    11101 tctgatgaac aaggtatcgt acatatggtc ggacctgaaa tggggttaac gcaaccgggt
    11161 aaaacgattg tttgtggcga ctcccatact gcaacacacg gcgcattcgg tgcgattgcg
    11221 ttcggtatcg ggacgagtga agttgagcat gtatttgcta cacaaacgct atggcaaacg
    11281 aaaccgaaaa atttaaaaat taacgtaacc gggcaacttc ctaaaggtgt ttatgcgaaa
    11341 gacattattt tgcatttaat caatcaacac ggcgttgact ttggtacagg ttatgcactg
    11401 gaatttgctg gagaaacgat tcgcaatttg tcgatggagg gtcgtatgac aatttgtaat
    11461 atggcgattg aagcaggtgc aaaatacgga ctgattcaac cagataacac gacttttgca
    11521 taccttgaag gacgtcgtta ctcacaaaac attgaggaca aacttgatga ttggcgtaaa
    11581 ctatacagtg atgacgacgc gcaattcgat aaaatcattg aattagatgt gacagcatta
    11641 gaaccacaag tcacttgggg cacgagtcct gaaatgggtg tcagctttag tacaccattc
    11701 ccagagattc aaaatgtcaa tgacgaacgt gcgtatcaat atatgggctt aaaaccaggt
    11761 caacttgcga cagatattcc gttaggctat gtgttcctcg gttcatgtac gaatgcacgt
    11821 atttccgatt tagttgaagc cagtcacatc gtcaaaggta atcaagtaca cgaaaacatt
    11881 acagcgattg tcgtacctgg ctcacgtcaa gtaaagaaag aggctgaagc catgggccta
    11941 gatacaattt ttaaagatgc tggttttgaa tggagagaac ctggatgcag catgtgtctc
    12001 ggtatgaacc ccgaccaagt gccagctggt gtccactgtg cgtcaacgag taaccgtaac
    12061 ttcgaaggcc gtcaaggtaa aggtgcaaga acacatctgg tatcccctgc tatggctgca
    12121 gctgcggcaa ttcacggacg ctttgtcgat gtgagaaagg tggttgaagc gtgatggaaa
    12181 ttaaagcaat tacacaatat tcgggcaaaa cggtcccatt atttcatgac aatattgata
    12241 ccgatcaaat cattccgaaa gtccatttaa agcggatatc taaaacaggt tacggccctt
    12301 ttctctttga tgaatggcgt tatttagaag acggttcaga taatcctaat ttcgtcttaa
    12361 atcaacctga atatgaaggg gcatccattt taattaccgg tgacaatttc ggttgtggtt
    12421 cgagtcgtga gcatgccgca tgggcgttaa aagatttcgg ttttcaagtg attattgcgg
    12481 aaagtttcag tgacattttt tatatgaact gtacgaaaaa tgcactgttg ccgattcgac
    12541 ttgaccgtgc atcacgagaa gcgattgcgc gttatcctga aatcacaatt gacttgccac
    12601 aacaaatcat ccaaacaccc gagcaaaatt atcactttga cattgatgaa acgtggaaag
    12661 aaaaacttgt gaatggctta gatgatattg ctatcacatt aaaatatgaa gcattaatca
    12721 aagactatga actaaaacat acttaaggag tgggaacaat gtctgtaaaa actacacctg
    12781 ttcaagccca agatgttgaa gatgcatttt tacgtctcaa cacaattgtt aaagaaacac
    12841 cattggaaaa ggatcattat ttatcgctca aatatgattg taatgtatat ttaaaacgcg
    12901 aagatcttca atgggtgcgt tcatttaaac tacgtggcgc ttacaatgcc attgctgtat
    12961 taccagaaga aaagagaaac caaggtatca catgtgcaag tgccggaaac catgcgcaag
    13021 gtgtcgcgtt tacagccaaa tacctcaact tacatgcggt tatcttcatg cctgtgacaa
    13081 caccaaaaca aaaagtcaat caagttcaat ttttcggtgg tgacaacgtt gaaattaaac
    13141 tagagggcga tacatttgat gattgcttaa agtcggcgct gagttatact gaacaacacg
    13201 atatgacttt cattgatccg tttaataatg tgcatacgat cgctggtcaa gggacattag
    13261 caaaagaaat gatcgaagcg gcaaaaacgg acaatatcac aattgattat gtgttcggcg
    13321 ctattggtgg tggcgggctt atgtcaggtg tagcgactta ttttaaagca cattcccctt
    13381 ctaccaaact gattggtgtg gaaccattag gcgcgagcag tatgtatcaa tccgtacaag
    13441 caggcgaagt ggtgacattg gacaatatcg ataaatttgt cgatggcgct tctgtcgcac
    13501 gtgtgggtga aattacattt aacatttgtc gtaaagcatt agatgattat gtgcaaattg
    13561 acgaaggggc tgtttgttca actatcttag acatgtattc gaaacaagcc atcgttgcag
    13621 aacctgccgg cgcattaagc gtcagcgccc tagaacaata ccaagatcaa attaaaggga
    13681 aaaatgtcgt ctgtatcgtt tctggaggga ataacgatat taaccgaatg aaagaaattg
    13741 aagagcgttc attattatac gaagaaatga agcattactt tattttgaat ttcccacaac
    13801 gtccaggggc actcagacaa ttcgtgaatg atgtgcttgg accacacgat gatattacca
    13861 agttcgaata tctgaagaag tcttctcaaa ataccggaac tgtcattatc ggcattcaac
    13921 ttcaaaatag agcagaccta gacacgctca ttcgtaacgt caatcaattt gaccctaaaa
    13981 acatttatat taacgaaaac aaaatgctgt attcgttatt aatttaagat gattcaaaag
    14041 gagcaaactt gagagaacca gctctcacat ttgctccttt ttaaaatttt gagatattag
    14101 tcaaattgat actttctcat agcgatacta aatccagtta agacgacgag catcaatatc
    14161 gcatcaatca taaaaacttg tgcggcatta tcattaagga taaacccaaa aaagctcagt
    14221 gaaacaggta taatcgcttg tgcaatagat gaattcagcg aaaagacgcg ccctttatat
    14281 tcgtcctcta ctgccttctg taaatagacg ccataaggtg tattaataat tggtaaactt
    14341 acaccaatca acatatatgt cgcaatcaga aagataaatg acgtcaaatt ttgatgtggg
    14401 tacaataaaa agacgccaag tgaaaataaa gtgacaattt caatcaaaat tccaatctta
    14461 taaaataatg tgacccctct tttcacagga taaatcgaca tcacaaatga cactaaaaat
    14521 agcgcaatcg tgtaacctga ttcaatcatc ccaaactgtg tcgatttaag atgcaactgt
    14581 tgtatcgcaa taatcggtac gccaacaact atgacattga ctaaaaagtt gtttaacatc
    14641 gcacaaacga gaaatgtcat aatttctttt ttctttacta agtattgcac accttcttta
    14701 aaagagtgca cgaactgact tttcatttgt tggtgattaa taattggtaa tgattgtata
    14761 agaataatcg aaatcgcttc agtaagcata ttcatcatcc cgatgacttg cagcggtata
    14821 aatgcaatga caatgccccc aatgattgga gaaacaaagc ttgtcaatgt cgacaccgtt
    14881 tgtctaatcg atatcacacg ctctaaattg tctgtcacga tacgttgtaa gtttttctga
    14941 ataatgacag agtttatccc atcaggaacc gttaataaga gacctaaaca aataatcata
    15001 tatacattgt catcgtataa caaagaaaaa atgatcagtg cagccacact tgataattga
    15061 gagtacaaaa ttaaccgttt attgttgact gagtctataa atacaccact aattggcgta
    15121 gaaagtatgg ttgtgatcac aatcaaagtt aaataaatac tgtacaaata actattttct
    15181 gtgtttttca aaatatggaa ggcacaagca aaactgaaga cacttgaacc aatggtagaa
    15241 ataaaaccaa agatgattaa tttataagca ttacatgtca aagtgtgaca cctccaaact
    15301 tcatattctt gatgcctgtg cgaatcgtgt aatggaggtt atttagtaca atggaatagt
    15361 agtttaaatt ttcttaatat tgcgccaact gatatctgta tta
//
LOCUS       DANHOL010000055        15401 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.055, whole genome shotgun sequence.
ACCESSION   DANHOL010000055 DANHOL010000000
VERSION     DANHOL010000055.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 15401)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15401)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15401
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.055"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(121..4815)
                     /locus_tag="PTC08_001209"
     CDS             complement(121..4815)
                     /locus_tag="PTC08_001209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729774.1"
                     /note="The YSIRK form of extended signal peptide directs
                     nascent proteins to the cross-wall site, while signal
                     peptides lacking YSIRK direct proteins instead to the cell
                     pole. A large fraction of YSIRK proteins are surface
                     proteins anchored by sortase-mediated processing of a
                     C-terminal LPXTG motif; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YSIRK-type signal peptide-containing protein"
                     /protein_id="HDK5682722.1"
                     /translation="MFNQQKQHYGIRKYAIGTSSVLLGMTLFITHDATAAENNTPAKT
                     ETNQAATISSRTSPTDVVQPNADTNATTATKETTPQSDSTALPQAAAQPQTGQTASKD
                     TVDTNKTQTADSTTDTPVTDAPKANDDTTQPEAATVAKKEDAQTPSTADPTPQAQQPP
                     QSKAPQETQQQSTVEDTTPQQNASTEAHPKNVDTASTKQQQTTPSTAPTPYTQQADEA
                     MTDVTTTSVDSNVQPLIPAEDQPKNTNTADKATVATPPRDNAKTADPNKKMTRAATTQ
                     QDDDVDTLKSKEMTATIDKSFPAVKYYTLKNGKKVDAQLTDARQIIVNGEVITPTVKY
                     NKIDDHTAEYDLTAQNDSRSIDANFKFRLSVEGKTVDLQMTDYTNNNTEPQNVIRNFS
                     FVSQSLVSVNNQQKNAKLQTSKLSTNTMKSGDKSYHIDENFKNDFNDFMMYGFVSNDD
                     YSAGLWSNAQIGVGIGEQDFLRVYAQSTQTDNGVAVGLGSMPWFIQKDAAHPDAKNQG
                     LLPHVKVAIAEDENQDGEINWQDGAIAYRSIMNNPYGAEEVPDLVGYRIAMNFGSQAQ
                     NPFLKTLDGVKKFYLNTDGLGQSILLKGYNSEGHDSGHLDYANIGQRIGGVKDFKTLL
                     QKGADYGARFGLHVNASETYPESQAFNPALLRKDANGNYMYGWNWLDQGFNIDADYDL
                     IHGRKERFEALKQIVGDDLDFIYVDVWGNGQSGDNTAWPSHQLAKEINDLGWRVGVEW
                     GHGMEYDSTFQHWAADLTYGSYQNKGINSEVARFLRNHQKDSWVGNYPKYSGAADFPL
                     LGGYDMKDFEGWQGRNDYSAYIKNIFNVDVPTKFLQHYKVMRIVDGEPVKMTANGQTI
                     DWTPEMQVDLQNEAGDQVTVKRKSNDYENDTDNYRSRTIELNGRTVLDGDSYLLPWNW
                     DANGQPLTGDNEKLYHWNKKGGSTTWTLPESWDTDQVVLYELSETGRKSPRTVAVKDH
                     QVTLDNIKADTPYVVYKVAQPDNTDVNWSEDMHVKDAGFNSQQLTPWTIEGNRDKVSI
                     EKSTTSNEMLKIDSPTKTTQLTQQLTGLVPGQRYAVYVGIDNRSDAAAHIAVTHNGKT
                     LASNETGQSIAKNYVKADAHSNNAATFKNGGSYFQNMYVYFVAPEDGKADLTIQRDPG
                     EGATYFDDIRVLENNANLLQNGTFNQDFENVPQGLFPFVVSEVEGVEDNRVHLSEKHA
                     PYTQRGWNNKRVDDVIDGKWSLKVNGQTGKDKMVIQTIPQNFYFEPGKTYEVSFDYEA
                     GSDDTYAFATGSGDISKNRNFEKTPLKNTVDGGKAKRVTFKVTGDENGQTWIGIYSTK
                     TPNDPRGVKNGNQINFEGTKDFILDNLSIREIDAPKPDATQESGDSAPMNETDERNVN
                     SNGTSADHSETTDVNVSATTDDTAVKGEMTTNRTDAPTVTLPEATIVDEGTSNPVTTT
                     PTNTTQAMTNKADEMPQTMNNVPLTGIATDMMQSHTVDSMAATLAATNQVAAPVRQTA
                     GPMQHGMDSASTQHAPVQVDNVTAPLLPDEQFAELPKTGVTTPNTRGPLMAMIVGAVL
                     TAFGFRRQRKEK"
     gene            5253..5963
                     /locus_tag="PTC08_001210"
     CDS             5253..5963
                     /locus_tag="PTC08_001210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HDK5682723.1"
                     /translation="MSEKLPLYYQVYKGIHSRIKAGEYKEGDKIPSERKLCEQFGVSR
                     ITVREALDRLEKDHVIKREHGKGSFVLGSQYTQFLNELYSFKDEIEKNGDEASTKMLS
                     IKLIPSTTFLQEKMNLKPYQYVYELKRLRLSNDVPLIYEVSYLPMRFCEGLEQFDFNR
                     VSLYETLNYHYGLQITNACENLTASKLSKEHAKLLNGVVDDSCMFIERFSYVDEDLIE
                     FTQSIASGHKYKYTVQLM"
     gene            5992..7107
                     /locus_tag="PTC08_001211"
     CDS             5992..7107
                     /locus_tag="PTC08_001211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIS domain-containing protein"
                     /protein_id="HDK5682724.1"
                     /translation="MLHETDTYREIKQQPQTLKKTFDIVQGQHEAFKQFVNQIEQTHS
                     GKKLKVLFTGAGSSAYVGDVARMARNTSVMPNFEFESVPTTHFVTDPQLYIDNQTVYL
                     VVSFARSGNSPETKATVEFVNELSQHVYHLFITNNKDGFLGAYEAEKDNVFKVILPEE
                     TNDKSLAMTSSFSSMLFASYLLFGGEVSPQFFEIAESNFEWLEQQAQAVNAMTFSKVF
                     YVATGLIGELTKEVSLKLNELTAGQTEIARETTLGFRHGPKAGLSKDAIFIMMRSNGT
                     YHRQYEDDLIKEVGQVKDRYKMYILDGQSDASEHTVQLPQSESLSDMELALQYLMFGQ
                     LLAAQRSNALGLNPDNPSPDGFINRVVKGVTVYPVKG"
     gene            7114..8052
                     /locus_tag="PTC08_001212"
     CDS             7114..8052
                     /locus_tag="PTC08_001212"
                     /EC_number="2.7.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hexose kinase"
                     /protein_id="HDK5682725.1"
                     /translation="MIATHTFNPSVDITYEIDPLVVGEVHRVKQKIENPGGKGINVTK
                     VLHQLGAAHCAFGYLGGANGQWMADTLKEMGITSAFTLIQGQTRQSLALNDGQAQTEV
                     LEQGPTISESEQQAYFKNVTQHAADAKVMTISGSSPQFETHSKFDHMARILKGFPHTY
                     NIVDTHAGELKALLEAKLPIHCIKPNQSEFEMLVGETQLTIDDCARLLQTHTYFSNCD
                     VFLTLGGDGALVKWKQDVYRATLPHKDIVNPVGSGDSTVAGIAYSVDQGLAPEALIRQ
                     ALACGTSNALQEKTGFIDVNQVAEIKNEIEVERFEW"
     gene            8046..8987
                     /locus_tag="PTC08_001213"
     CDS             8046..8987
                     /locus_tag="PTC08_001213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tagatose 1,6-diphosphate aldolase"
                     /protein_id="HDK5682726.1"
                     /translation="MVKDLSRLVDENGIYAAVAVDQRGALRKLLGDTGTPENLSLFKK
                     LVAEVLTSHGSSFLVDPEYGLDAAKAKDAKAGLILSYEQTGYDKSRPGRLPRLIEDQS
                     VRRLVAAGADAVKFLLYYDVDESDEINQKKQAMIERVGTECQAENVPFLLEILTYDDS
                     IGDEKGEAFAKVRPHKVNEAMRVFSEPRFQVDTLKVEIPVNMNFVEGFGDKAVMTQAE
                     ASEAFKAQDAATNIPYIYLSGGVSAQLFMDSLQFAADNGAHFNGILCGRATWKGATAA
                     LVDAGEQEAKAWLESEGLDNLKALNEVNVKTATPILS"
     gene            9000..10772
                     /locus_tag="PTC08_001214"
     CDS             9000..10772
                     /locus_tag="PTC08_001214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-galactosidase"
                     /protein_id="HDK5682727.1"
                     /translation="MSRFKISDTFLLDDKPIKILSGAIHYFRIPKDDWEDSLYNLKAL
                     GFNTVETYVPWNFHETIENEYDFKGHKDLKHFIELAAKLGLYVIVRPSPYICAEWEFG
                     GFPAWLLNDRTMRIRSRDEKYLEKVKKYYHELFKILTPLQIDQGGPIIMMQVENEYGS
                     FGQDHDYLRSLAHMMREEGVTVPFFTSDGAWDQCLRAGSLIEDDILPTGNFGSRTVQN
                     FENLKTFQQEFSKKWPLMCMEFWDGWFNRWGEPVIKRDSDDLAEEVRDAVKLGSLNLY
                     MFHGGTNFGFWNGCSARGTKDLPQVTSYDYHAPLDEAGNPTEKYFALQEMLKEEMPDI
                     EQHEPRTKTFMSMKAIPLAAKVNLFEVLEDISTKTTSFYPQTMEEAGSGYGYMVYRTR
                     IHKATEQEKLRIVDARDRVHCFVDQQHVYTAYQEEIGDQFEVTLTSDQPQIDVLIENM
                     GRVNYGYKLLAPTQRKGLGQGLMQDLHFVQGWEQFDIDFDRLTANHFKREWSEQQPAF
                     YKYTFDLAESNNTHIDVSGFGKGVVLVNGFNIGRYWEIGPSQSLYIPKAFLKQGQNEI
                     IVFDSEGKYPESIQLIETPKFSEV"
     gene            10787..11266
                     /locus_tag="PTC08_001215"
     CDS             10787..11266
                     /locus_tag="PTC08_001215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HDK5682728.1"
                     /translation="MAIIGSRIDGRLIHGQVANLWATKLNIGRFIVIDNEVAQSDIDK
                     QALKLATPAGIKLSVLPVEKAANNINNGKYDSQRVMVIAKRPDRFVELVNNGVKIEEL
                     NVGNMSQTNETRSVTNSINITDEDVNNFKLLQEKGVNIISQMVPNDKSVDFMSLIKE"
     gene            11288..12187
                     /locus_tag="PTC08_001216"
     CDS             11288..12187
                     /locus_tag="PTC08_001216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002460936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HDK5682729.1"
                     /translation="MDILWWQVLLLTLYAGYQILDDLQFNIFGHPVFAGIISGLIMGD
                     VTTGLIIGGGMQLTILGVGTFGGASRIDANSGTVLAVAFSVALGMNPQQALATLAVPV
                     ASLMIQTDILARFTNTFFAHRIDKKIEQMDYKGIERNYLYGAIPWALSRAIPVFLALV
                     FGGSVVGKIVDYLNGDLKWLGDGLTVAGAVLPAVGFAILLRYLPLKKHYPYFILGFII
                     TALMVTVFNGLSGIGTSVAGLDKNFTMSFSSLPMLAIAAIGFALAAMEYSRSSQSKTI
                     AANHGGNQATDADDEGEIDDDEL"
     gene            12246..13058
                     /locus_tag="PTC08_001217"
     CDS             12246..13058
                     /locus_tag="PTC08_001217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002311319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system mannose/fructose/sorbose family
                     transporter subunit IID"
                     /protein_id="HDK5682730.1"
                     /translation="MPQTPYKLTDKDFRQMNIRSLLFFQWGWNYERMQGSGYLFTILP
                     QLRKIYGDDSPELQEIMRTHAQFFNTSNFFNTIIMGIDIAMEEKERYASKESVKGIKV
                     GLMGPFAAVGDAIFGSLVPTIFGAIAANMAQDGNPFGALLWFVAMLAIIVFRWKQLKF
                     AYKEGISLVTTMQHRLESLTNAATLLGVFMVGALVATMIRVQFAWKPQIGDLTVNIQN
                     NADMILPRLLPLIIVFAIYWLLGRKKMNSTRAIFIVIIVSIILSALGVISKI"
     gene            13080..13481
                     /locus_tag="PTC08_001218"
     CDS             13080..13481
                     /locus_tag="PTC08_001218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS fructose transporter subunit IIA"
                     /protein_id="HDK5682731.1"
                     /translation="MEKLILVSHGAFCEGLKDSVEMILGPQDYIHTAALTPEMGPEDF
                     EKALDALIDEGDQVTVFADLLGGTPANTVSKKIMNGSDLNLYVGMSLPMVMSYINGKM
                     IGEQPDYVQKAQEGIIHINALLNQDDDDDDE"
     gene            13513..14667
                     /gene="nagA"
                     /locus_tag="PTC08_001219"
     CDS             13513..14667
                     /gene="nagA"
                     /locus_tag="PTC08_001219"
                     /EC_number="3.5.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylglucosamine-6-phosphate deacetylase"
                     /protein_id="HDK5682732.1"
                     /translation="MTYVIINGVIYTENGVISDGYLIVEEGKIKAIETGAYTGDLEVV
                     DAKGRHILPGFIDVHIHGGYGEDAMDGSYDGLKYLAEHLLIEGTTTFLATTMTQSQEA
                     IEKALHNISVYHQKQDVTNAAEVGGVHLEGPFISEHKIGAQNPAFIQRPTVELLRHFQ
                     EKAKGLIKIVTIAPEVEGASEVIQTLKDEFIFSMGHTEVDFDQANTAAAEGVKHVTHL
                     YNAGVGFHHRNPGMFGAAWTNDRLSTEVIVDGVHAHPQSVAIAYQHKGPEKMYLITDA
                     MRAKGMPEGDYELGGQKVIVKDHEAHLESGSLAGSVLKMNEGLRNLIQFTGENLETLW
                     PVTSLNQAKALRIDDHKGSIAVGKDADLVVVDDDIHVYQTIKMGRVHNII"
     gene            complement(14854..15369)
                     /locus_tag="PTC08_001220"
     CDS             complement(14854..15369)
                     /locus_tag="PTC08_001220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002446907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyisoprenoid-binding protein"
                     /protein_id="HDK5682733.1"
                     /translation="MTNLKFDPVHSNLEFSIRHLMVSKVKGTFHDYTVDVTGDINDLS
                     SLQSVVTINVNSIDTKNADRDNHLKTADFFNAESHQQIVFKSKKVTENKVTGDLTIAG
                     QTNEETFDFENLGVSNNPLTGGKVTGFTASGTIDREKYGMNFNQALETGGVMLGKDVK
                     FEFHGEFSIED"
BASE COUNT         4526 a         2796 c         3373 g         4706 t
ORIGIN      
        1 cgaatactta cattctgatt tgtcttcata tgatttagca atcaaatatg gtattcgcag
       61 cgcaactcaa gtcaaaaatt ggataacaat gtgtactgag ggtaatgtcc cagcctattc
      121 ctatttttct ttacgttggc gtctgaatcc gaatgctgtt aagactgcgc caactatcat
      181 cgccattaaa ggtccacgtg tatttggagt cgtaacccca gttttaggta attcggcaaa
      241 ctgttcatct ggtaatagtg gtgctgtgac attgtcaact tgtacgggtg cgtgttgcgt
      301 tgaagcactg tccataccat gttgcatagg tcctgctgtt tgacgcacag gtgccgccac
      361 ttgatttgta gctgctagtg ttgctgccat ggaatccacc gtatgagact gcatcatatc
      421 ggtagcgatg ccagttaaag gaacattgtt catcgtttgt ggcatctcat cagccttatt
      481 tgtcatagct tgtgttgtat tcgttggtgt tgtagtgaca gggtttgacg tgccttcatc
      541 tactatcgtt gcttcaggca gtgtaacagt tggtgcatct gttctgtttg tcgtcatttc
      601 gcctttgact gctgtatcat ctgtcgttgc actgacattg acatcagttg tctcactatg
      661 atcggctgat gtaccgtttg aattgacgtt acgctcatct gtttcattca ttggtgcgct
      721 atcaccgctt tcttgtgtgg catcaggctt cggtgcgtca atttcacgga tagaaaggtt
      781 gtctagaatg aaatctttcg tcccttcgaa gttgatttga ttgccatttt tcacgcctcg
      841 tggatcattg ggtgttttcg ttgagtaaat accgatccaa gtttgaccat tttcatcacc
      901 cgtcacttta aatgtcaccc gtttcgcttt gccaccatcg actgtatttt tcaatggtgt
      961 cttttcaaag ttacgatttt tagaaatgtc cccactacct gtcgcaaatg catacgtatc
     1021 atcagaacct gcttcataat caaatgacac ttcatacgtt tttcctggtt cgaagtagaa
     1081 gttttgcgga atcgtttgga tgaccatttt atctttacct gtttgaccgt ttactttaag
     1141 tgaccatttg ccatcaatga catcatcgac acgtttatta ttccatccgc gttgtgtata
     1201 cggtgcgtgc ttttcagata agtgaacgcg attatcttca acgccttcaa cttctgacac
     1261 gacgaacggg aataaccctt gtggtacatt ttcgaagtct tggttgaatg tgccgttttg
     1321 aaggagattc gcgttatttt ctaacacacg aatatcatcg aaataagtgg ccccttcacc
     1381 tgggtcgcgt tgaatcgtca agtctgcttt accatcttct ggcgcaacga agtacacgta
     1441 catgttttgg aagtaactac cgccattttt aaacgtcgca gcattgttac tatgtgcatc
     1501 tgctttcaca tagtttttcg cgatcgattg acctgtttcg ttacttgcga gcgttttacc
     1561 gttatgtgtc actgcaatat gcgccgctgc atcactgcgg ttatcgatgc caacatagac
     1621 agcgtaacgt tgtcctggca ctaaacctgt caattgttgc gttaattgcg ttgtttttgt
     1681 tggactatcg atttttagca tttcatttga tgttgtcgac ttttcgatgc tcactttatc
     1741 tcgattgcct tcgattgtcc aaggtgtcag ttgttgtgag ttgaagccgg catctttcac
     1801 gtgcatgtct tcgctccagt tcacatctgt gttgtctggt tgtgcgactt tataaacgac
     1861 atacggtgtg tctgctttaa tattatcgag tgtcacttga tggtctttca ctgccactgt
     1921 acgtggtgac ttacgacccg tttcagataa ttcgtatagc acgacttggt ctgtatccca
     1981 tgattcaggc agtgtccaag tcgttgaacc gcctttttta ttccagtgat ataatttttc
     2041 gttatcgcca gttaatggtt ggccgttcgc atcccaattc catggtaaaa ggtatgaatc
     2101 gccatcgagt actgtgcgac cattcaattc gattgtacgt gagcggtagt tgtcagtgtc
     2161 gttttcatag tcgttagatt tacgtttaac agtgacttga tcaccggctt cattttgtaa
     2221 atcgacttgc atttctggtg tccagtcaat cgtttgacca ttggcagtca ttttaacagg
     2281 ctcaccatcg acaatacgca tcactttata atgttgtaaa aactttgttg gtacatcaac
     2341 attgaaaata tttttaatgt aagcagagta atcgttacga ccttgccaac cttcaaaatc
     2401 tttcatgtca taaccgccga gcaatgggaa gtcagctgca cctgagtatt ttggatagtt
     2461 accgacccat gaatcttttt gatggttgcg taagaagcgt gctacctctg agttaatccc
     2521 tttattttgg tacgatccat acgttaagtc ggctgcccaa tgttggaacg tggagtcata
     2581 ttccataccg tgaccccatt cgacaccgac gcgccatcct aagtcgttga tttctttggc
     2641 taattgatgt gatggccaag ctgtattgtc gccggattgt ccattccccc atacatcgac
     2701 ataaataaag tcgaggtcat caccgacaat ttgtttgagt gcttcgaagc gttctttacg
     2761 cccgtgtatt aaatcgtaat ctgcatcgat gttaaagcct tgatcgagcc agttccagcc
     2821 atacatatag tttccattcg catctttacg taagagggca ggattgaatg cttgagactc
     2881 tggatatgtt tcagatgcat tcacatgaag accgaaacgt gcgccataat ctgccccttt
     2941 ttgaagtaac gttttaaagt ctttcacgcc acctatacgt tgaccaatat tcgcgtaatc
     3001 taaatgacca gagtcgtggc cttcactgtt ataacctttt aataaaatgg attgccctaa
     3061 accatctgta ttgagataga attttttcac accatctaac gtctttaaaa atgggttttg
     3121 cgcttgagaa ccaaagttca tcgcgatacg gtacccaaca aggtcaggta cttcttcggc
     3181 accatatgga ttgttcataa tgctacgata agcaattgca ccgtcttgcc agttaatttc
     3241 accatcttga ttttcatctt ccgcaattgc aactttgaca tgtgggagta gtccttgatt
     3301 tttcgcatct ggatgtgcag cgtctttttg gataaaccat ggcattgagc ctaaaccgac
     3361 agcgaccccg ttatctgttt gtgtagactg tgcgtagaca cgtaagaagt cttgttcacc
     3421 aatgccgacg ccaatttgtg cgttactcca caatcctgca ctgtaatcat catttgacac
     3481 gaaaccgtac atcataaagt cgttgaagtc gtttttgaaa ttttcatcga tatgatatga
     3541 tttatcgccg cttttcattg tatttgtaga cagtttcgat gtttgcagtt tggcattttt
     3601 ctgttgattg tttacagata cgagcgattg gcttacaaag ctaaagttgc gaatgacgtt
     3661 ttgtggctct gtgttgttgt tcgtgtaatc tgtcatttgt aaatcaacgg tcttaccttc
     3721 aactgataaa cggaatttaa aattggcatc aatcgaacgt gaatcatttt gtgctgttaa
     3781 gtcatattca gccgtatgat catcaatttt gttgtatttg actgttggtg taatgacttc
     3841 accattgacg atgatttgac gtgcatccgt cagttgtgca tcgacttttt taccattttt
     3901 caatgtgtaa tatttaacgg ctggaaaact tttatcgatc gttgctgtca tttcttttga
     3961 cttcaatgta tcgacgtcat catcttgttg tgtcgttgct gcacgtgtca tttttttgtt
     4021 cggatcagca gtcttagcat tgtcacgtgg tggtgtcgca acggttgctt tgtcagctgt
     4081 gttcgtattt ttaggttgat cttctgcagg gattaacggc tgtacgttgc tgtcgacact
     4141 ggttgttgtg acatctgtca ttgcttcgtc tgcttgttgt gtgtaaggtg tcggtgccgt
     4201 tgatggcgtt gtttgttgtt gttttgttga agcggtatct acatttttag ggtgtgcttc
     4261 agttgatgcg ttttgttgtg gcgttgtatc ttcaactgtt gattgttgtt gcgtttcttg
     4321 aggtgctttt gactgaggcg gttgttgcgc ttgtggtgta gggtctgcag tcgatggtgt
     4381 ctgagcatct tcttttttgg ctacagtcgc agcttctggc tgtgttgtgt cgtcattagc
     4441 ttttggcgcg tctgtcacag gagtatcggt tgtggaatct gctgtttgcg ttttatttgt
     4501 atctactgtg tctttcgatg ctgtttggcc cgtttgaggt tgcgctgctg cttgcggtaa
     4561 tgctgttgaa tctgattgtg gtgttgtctc tttagtcgcc gttgtagcat tcgtgtctgc
     4621 attaggttga acgacgtcgg ttggcgaagt gcgagaagaa attgttgctg cttgatttgt
     4681 ctctgtcttt gcaggtgtat tgttttcagc tgcagttgcg tcatgtgtga taaataatgt
     4741 catgcctaat aatactgatg aagtcccgat tgcatatttc cggataccat agtgttgttt
     4801 ttgttgatta aacatttgtc tatgcactcc tcataagatt aattgaatag aatatataat
     4861 ttttatactt ctttgtaaac ccttacaaat ccggtgttat cgtacttttg gcagattgta
     4921 gagtcgaaaa taataccact tttttatcgc tatgcagcgc ttttggaatt gcaagaaatg
     4981 tacacagcga cattgtttgt tacgattgtt caatagtacg caaactaaaa aaaatttaga
     5041 gtggttataa ccagaaaaac gatagaaaaa atttttttga gcaatgattt tgaaagggtt
     5101 ttctaaaagt gcaacaatag tgttgtaagt tgccatggac aatgttgtaa acgttttgtt
     5161 taaaaggcga aaattaaaat taaagtcttt acaaaaatag taagagtctt tataattcaa
     5221 ggtggttata accagtagag gtgaatcata tcatgtctga aaaattacca ttgtactatc
     5281 aagtgtacaa gggcattcat agtcgtatta aggctggtga gtataaagaa ggcgataaaa
     5341 taccatcaga acgcaagctg tgtgagcagt ttggcgtgag tcgaattact gtgcgtgaag
     5401 ctttagatcg cttagaaaaa gatcatgtca ttaaacgcga acacggcaaa ggatcctttg
     5461 tactcggtag tcaatataca cagtttttga acgagcttta tagttttaaa gatgagatag
     5521 aaaaaaatgg tgatgaggcg agtacaaaaa tgttaagcat taaactcatc ccatctacca
     5581 cgtttttgca agaaaaaatg aatttgaaac cctatcaata tgtttatgaa ttaaagcgct
     5641 tacgactttc gaatgatgtc ccactcatat acgaggtgag ttatttgccg atgcgttttt
     5701 gtgaagggct cgagcaattt gattttaatc gtgtctctct ttatgaaacg ctcaattatc
     5761 attacggttt gcagataacg aatgcttgtg agaatttgac ggcaagtaag ttgagtaaag
     5821 aacatgcgaa attgttgaat ggtgtagtcg atgatagttg catgtttatt gaacgcttta
     5881 gttatgtaga tgaagatttg attgagttta cacaaagcat tgcaagtgga cataaatata
     5941 aatacaccgt gcaattgatg taaccataaa aatgatatgg gaggtagtat tgtgttacat
     6001 gaaacagata cttatcgcga aataaagcaa cagccacaaa ctttgaaaaa aacgtttgat
     6061 attgttcaag ggcaacatga ggcattcaag caatttgtga atcaaatcga acaaacacat
     6121 tcagggaaaa aattaaaagt acttttcaca ggcgcaggat caagcgctta tgtcggagat
     6181 gtcgcacgta tggcacgcaa cacctctgta atgccaaact ttgaatttga gtctgtaccg
     6241 acaacacatt ttgtgaccga tccacaactt tatattgata accaaacagt gtatcttgtt
     6301 gtatcgtttg cgcgttccgg taacagtcca gaaacgaaag cgacagtcga atttgtgaat
     6361 gaactttctc aacatgtgta tcacttattc attacaaata ataaagatgg cttcttaggg
     6421 gcatacgaag cggagaaaga caatgtgttc aaagtgattt tgcctgaaga aacaaacgac
     6481 aagtcactcg caatgacatc cagcttttca tctatgttat ttgcaagtta tttactcttc
     6541 ggtggtgaag tgagtccaca atttttcgag attgcagaat caaactttga gtggctcgaa
     6601 caacaagctc aagctgtgaa cgcaatgaca ttttcaaaag tgttctatgt agcgacaggt
     6661 ttgattggtg agttaacaaa agaagtgagc ttaaaactga acgaattaac ggcaggacaa
     6721 acagaaatcg cacgtgaaac aacgttaggt ttcagacacg gtcctaaagc aggtttaagc
     6781 aaagacgcta ttttcattat gatgcgtagt aatggtacat atcatcgtca atacgaagac
     6841 gacttgatta aagaagtggg ccaagtgaaa gatcgttaca aaatgtatat tttagacggt
     6901 caaagtgatg caagtgagca tactgttcaa ttaccacaat ctgaatcatt atcagatatg
     6961 gagctcgcat tgcaatattt aatgtttggc cagttactcg ctgcgcaacg ttctaatgca
     7021 ttaggtttaa atccggataa cccaagtcca gacggcttca ttaaccgtgt cgttaaaggg
     7081 gtaacggttt atccagttaa agggtgagga attatgattg caacacatac atttaatcca
     7141 tctgtagaca ttacgtacga gattgatcca cttgtggttg gtgaagtcca tcgtgtcaaa
     7201 cagaaaatcg aaaatccagg cggtaaagga attaacgtga cgaaagtact acatcaatta
     7261 ggtgcggcac actgtgcgtt tggctatctc ggcggcgcca atggtcagtg gatggccgat
     7321 acgttgaaag agatgggaat tacaagtgcg tttacgttaa tccaaggaca gacaaggcaa
     7381 agtttagcgt tgaatgatgg ccaagcccaa acggaagtcc ttgagcaagg gccaacgatt
     7441 tcagaaagcg aacaacaagc ttattttaaa aatgtcacac aacatgctgc ggatgcgaaa
     7501 gtgatgacga tcagcggcag ttcaccgcag ttcgaaacgc attcgaagtt tgaccatatg
     7561 gcacgcattt taaagggatt cccacatacg tacaatattg tcgatacgca tgcgggcgag
     7621 ttaaaagcac tgttagaagc gaagttacca attcactgta ttaaaccgaa tcaatctgaa
     7681 tttgaaatgc tagtcggtga aacacagtta acgattgatg attgtgcacg tttgttacag
     7741 acacatacgt attttagcaa ttgcgacgtc tttttaacac taggtggaga cggtgcgctt
     7801 gtgaagtgga agcaagatgt ttatcgtgcg acattgccac ataaggatat tgttaatcca
     7861 gtcggttcag gtgattcgac tgttgcaggt attgcttaca gtgtggatca aggtttagcg
     7921 ccagaagcgt taattcgtca agccttagca tgtgggacgt cgaatgcttt acaagaaaaa
     7981 acaggcttta ttgatgtcaa ccaagtcgct gaaattaaaa atgaaataga agtggagagg
     8041 tttgaatggt aaaagattta agtcgtttag tagatgaaaa tggaatctat gcagcagtgg
     8101 cagtagacca acgtggcgca ttaagaaaat tgttaggtga cacaggaaca cctgaaaact
     8161 tgtcattatt taaaaaattg gtagcagaag tgttaacgtc acatggttct agctttttag
     8221 tagaccctga atatggttta gatgctgcaa aagcgaaaga tgcaaaagca ggcttaatct
     8281 tatcttatga acaaacaggt tatgataagt ctcggcctgg acgtttacca cgtctaattg
     8341 aagatcaaag cgtacgtcgt cttgttgcag caggtgcaga cgcagtgaag ttcttacttt
     8401 actatgatgt agatgaatca gacgaaatca accaaaagaa acaagcgatg atcgaacgtg
     8461 taggaacaga gtgtcaagct gaaaacgtcc cattcttact tgaaatctta acatacgatg
     8521 acagcattgg tgacgaaaaa ggtgaagcat ttgcgaaagt tcgtccacac aaagtgaacg
     8581 aagcgatgcg tgtattcagt gaaccacgtt ttcaagtaga cacattgaaa gtggaaattc
     8641 ctgtaaacat gaactttgtt gagggatttg gagacaaagc agtgatgacg caagcagaag
     8701 cgtcagaagc gtttaaagcg caagatgcag caacaaacat cccttatatt tacttaagtg
     8761 gtggcgtatc tgcgcaatta tttatggatt cactccaatt tgcagctgat aatggtgcac
     8821 atttcaacgg tattttatgt ggtcgtgcaa catggaaagg tgcaacagcc gcacttgtag
     8881 acgcaggtga acaagaagcg aaagcatggt tggaaagcga aggtcttgat aacttgaaag
     8941 cgcttaacga agtgaatgta aaaacagcaa caccaattct atcttaatga ggtgatgatg
     9001 tgagtcgttt caaaataagc gatacatttt tattagatga caaaccaatc aaaatattgt
     9061 ccggtgccat ccattacttt agaataccaa aggatgactg ggaagattca ttatacaatt
     9121 taaaagcact cggatttaat acagtggaaa cttatgtccc ttggaacttt catgaaacga
     9181 ttgaaaatga gtacgacttc aaaggacata aagatttaaa acattttatc gaacttgcag
     9241 caaagcttgg actttacgtt atcgtacgac cttctcctta catttgtgcg gagtgggagt
     9301 tcggtggatt tccagcatgg ttattgaatg accgtacaat gcgcatccgt tcgagagatg
     9361 agaaatattt agaaaaagtg aaaaaatatt atcatgaact gtttaaaatc ttaacgccat
     9421 tgcaaattga tcaaggaggc ccgattatca tgatgcaagt cgaaaatgaa tacggttcat
     9481 tcggtcaaga tcacgactat ttacgttcac ttgctcacat gatgcgtgaa gaaggtgtga
     9541 cagtaccatt tttcacatca gacggtgctt gggatcaatg tttaagagcg gggagtctca
     9601 ttgaagacga tattttaccg actggcaatt ttggttcacg tacagttcaa aatttcgaaa
     9661 acctaaagac gttccaacaa gaatttagta aaaagtggcc gttaatgtgt atggaatttt
     9721 gggatggctg gtttaatcgc tggggcgaac ctgtgattaa acgagacagt gatgatttgg
     9781 ctgaagaagt gcgcgatgca gtgaaattag gctcacttaa tttatatatg ttccatgggg
     9841 ggacaaactt tggtttttgg aacggttgct cggcacgtgg tacgaaagat ttaccacaag
     9901 tgacatctta tgactatcat gcgccgttag atgaggcggg taatccaaca gaaaaatact
     9961 ttgctttaca agagatgctc aaagaagaaa tgcctgacat agagcaacat gagccaagaa
    10021 cgaaaacatt tatgtcaatg aaagctattc cattggcagc caaagtgaat ttattcgaag
    10081 tacttgaaga catttcaaca aaaacgacaa gcttctaccc acaaacgatg gaagaagcgg
    10141 gttctggata tggttatatg gtatatcgta cgcgtatcca taaagcgaca gaacaagaaa
    10201 aattacgaat tgtagatgca agagaccgtg tccactgttt tgtagaccaa caacatgtct
    10261 acacagcgta tcaagaagaa attggagatc agtttgaagt cacattaacg tctgaccaac
    10321 cacaaatcga tgtgctcatt gaaaatatgg gtcgtgtcaa ctacggctac aaattattag
    10381 caccgacaca acgtaaaggt ttaggtcaag gactcatgca agatcttcat tttgtacaag
    10441 gttgggaaca attcgatatc gacttcgacc gtttaacagc gaatcatttc aaacgtgaat
    10501 ggtctgaaca acaacctgct ttttacaaat acacatttga cttagcagag tcgaacaata
    10561 cgcatattga tgtaagcggt ttcggaaaag gtgttgtact cgtcaacgga ttcaacatcg
    10621 gtcgttattg ggaaattgga ccgtcacaat cgctctacat tcctaaagca tttttgaaac
    10681 aaggacaaaa tgaaattatc gtgtttgact cagaaggaaa atatccagaa agtatccaac
    10741 tgatcgaaac accaaaattt tctgaagtat aaggagagga tttattatgg caattatcgg
    10801 aagcagaatc gatgggagat taattcacgg acaagtggca aacttatggg caacaaaatt
    10861 aaacattgga cgattcatcg ttattgataa tgaagtcgct caaagtgata tcgacaaaca
    10921 agcattaaaa cttgcgacac cagcaggaat taaattaagt gttttaccag ttgaaaaagc
    10981 agctaacaac atcaacaacg gtaaatatga ttcacaacgt gtgatggtta tcgcaaaacg
    11041 tcctgaccga tttgttgaac ttgtgaacaa tggtgtgaaa attgaagaat tgaatgtagg
    11101 taacatgtca caaacaaatg aaacacgttc agtgacgaac tcaatcaaca ttactgacga
    11161 agatgtaaac aatttcaaat tattacaaga aaaaggcgtc aacattatct cacaaatggt
    11221 accaaacgat aaatcagttg actttatgtc attaatcaaa gaatagaact atcaggaggc
    11281 gtttctattg gatattttat ggtggcaagt attgctctta acgctgtacg caggttatca
    11341 aattttagat gatttgcaat ttaatatttt cggacatcct gtatttgcag ggattatatc
    11401 aggtttaatc atgggcgatg ttactactgg tttaattatc ggtgggggga tgcagttaac
    11461 aattctaggg gtaggtacat tcggtggtgc atcaagaatc gatgcaaact ctggtacggt
    11521 attagcggtt gcgttctcag tagcactcgg aatgaaccca caacaagcgc ttgcgacact
    11581 tgctgtacct gtagcgagct taatgattca aacagatatt ttagcacgtt tcacaaacac
    11641 attctttgca catcgtattg ataaaaaaat tgaacaaatg gattacaaag gtattgaacg
    11701 taactactta tacggtgcga ttccatgggc attatctcgt gcgattccag tatttttagc
    11761 acttgtattc ggtggtagcg tggtaggtaa aatcgttgac tacttgaacg gtgatttaaa
    11821 atggttaggt gacggtttaa cagtggcagg tgcggtatta ccagcagtcg gtttcgctat
    11881 tttgttacgt tacttacctt tgaaaaaaca ttatccttac tttattttag gttttatcat
    11941 tacagcatta atggtgacag tctttaacgg tttatcaggt atagggacat cagttgcagg
    12001 tttagacaaa aactttacaa tgtcgttctc atcattacca atgttagcga ttgcagcgat
    12061 tggttttgct ttagcggcaa tggaatacag tcgaagctca caatctaaaa caatagctgc
    12121 aaatcatgga ggaaaccaag caacagatgc ggatgatgaa ggagagattg acgatgacga
    12181 attataatca aacggaaaca caaatttctc aaaacgctga tgcaaattca aagttaacag
    12241 gtgcaatgcc gcaaacacct tataaactga ctgataaaga ctttagacaa atgaacatac
    12301 gtagcttatt gttcttccaa tggggttgga actacgagcg tatgcaagga tctggttatt
    12361 tattcacgat ccttccacaa ttacgtaaaa tttatggtga cgattcacct gaattacaag
    12421 aaataatgcg aacacatgcg caattcttca atacaagtaa cttctttaac acgattatta
    12481 tgggtattga tattgcgatg gaagaaaaag aacgctatgc atcaaaagaa tctgtcaaag
    12541 ggattaaagt cggtttaatg ggaccatttg cggctgtagg ggatgcgatt ttcggttcat
    12601 tagttcctac aattttcggt gccattgcag caaacatggc gcaagacggt aatccattcg
    12661 gtgcattgct ttggtttgtc gcaatgctag ctatcatcgt attcagatgg aaacagttga
    12721 aattcgcgta caaagaaggg atttcacttg tgacaacgat gcaacaccgc ttagaatcat
    12781 taacgaatgc agcaacattg ctcggggtat tcatggtcgg tgcactcgtc gctacgatga
    12841 ttcgtgtgca atttgcttgg aaaccacaaa ttggtgattt aacagtcaac atccaaaaca
    12901 atgccgacat gattttacca agattattac ctttgattat tgtatttgcc atttactggt
    12961 tattaggacg taaaaaaatg aactcaacac gtgcaatctt cattgtgatt atcgtttcaa
    13021 ttattttgtc agcgttgggt gttatttcaa aaatttaatt cgatgggagc atttggacta
    13081 tggaaaagtt aatccttgtg agtcacggcg ctttttgtga agggcttaaa gacagtgtag
    13141 aaatgattct tgggcctcaa gattacattc atactgcggc attgacacca gaaatggggc
    13201 ctgaagattt tgaaaaagca ttagacgcac tcattgatga aggcgatcaa gtgacagttt
    13261 ttgcagattt attaggcggt acaccagcga ataccgtttc taaaaaaatc atgaatgggt
    13321 cagacttaaa tctttatgta gggatgagtt taccaatggt gatgagctat attaatggta
    13381 aaatgattgg tgaacaacct gactatgtgc aaaaagcgca agaaggtatc attcacatca
    13441 acgcgctgtt aaatcaagac gatgacgatg atgatgaata aaacaatcaa attacagtaa
    13501 agaaggtata ctatgacata tgtaattata aatggcgtca tttatacaga aaacggtgtg
    13561 atttcagacg gttaccttat agtggaagaa ggtaaaatta aagcaattga aacgggtgcg
    13621 tatactgggg acttagaagt tgtagatgca aaaggacgtc acatcttacc cggtttcatt
    13681 gacgtgcaca tccacggtgg ttatggtgaa gatgcgatgg acggctcata cgatggcttg
    13741 aaatatttag cggaacatct attaatagaa ggcacaacga cctttttagc gacgacaatg
    13801 acacagtctc aagaagcgat tgaaaaggca ttacacaata ttagtgttta tcatcagaaa
    13861 caggatgtga ccaatgctgc cgaagtaggt ggtgtacatt tagagggacc attcatttct
    13921 gagcacaaaa tcggagcaca aaatccagca tttatccaaa gacccacagt ggaattgttg
    13981 agacattttc aagagaaagc taaaggactc attaaaattg tgacaattgc acccgaagtt
    14041 gaaggtgcaa gtgaagtcat tcaaacgtta aaagatgagt ttatcttttc aatgggtcat
    14101 actgaagtcg attttgatca agcgaacaca gcagcagcag agggtgtcaa acacgtcaca
    14161 cacttataca atgcgggtgt cggtttccat catagaaatc caggtatgtt tggtgcagct
    14221 tggacaaacg accgattaag tacagaagtc attgtcgatg gtgtccatgc acatcctcaa
    14281 tcagtcgcaa ttgcgtatca acataaagga ccagaaaaaa tgtacctgat tacggatgcg
    14341 atgcgtgcaa aaggaatgcc tgagggtgac tatgaattag gaggccaaaa agtgattgtg
    14401 aaagatcacg aggcgcactt ggaatcaggt tcgttagctg gtagtgtctt gaaaatgaat
    14461 gagggtttac gcaatttgat tcaatttacg ggagaaaatt tagaaacatt atggccagta
    14521 actagcttga atcaagcgaa agcattgcgg attgatgacc ataagggcag tatcgctgta
    14581 ggcaaggatg cggatcttgt ggttgtagat gatgacatac acgtgtatca aacgataaaa
    14641 atggggcgtg tgcacaacat catatagtag tacatggata cgacgatagc aagtgggcga
    14701 aacaccataa gctatcgtct ttattatgtt gaagtatttt tgtacttcaa taaaatcatc
    14761 aaaaaatccg agatagtcca tcattatgaa tgacgaacat ctcggatatt tgtttaacta
    14821 agatggtatt gtcttagcga aatctgagtt ttattaatct tcaatagaaa actcaccgtg
    14881 gaattcgaat ttaacgtctt taccaagcat aacgccacct gtttctaaag cttggttgaa
    14941 gttcataccg tatttttcac ggtcaattgt acctgatgct gtgaaaccag taacttttcc
    15001 gcctgtaagt gggttgttgc tcacaccaag gttttcaaaa tcgaatgttt cttcgtttgt
    15061 ttgaccggca attgtcaaat caccagtaac tttgttttct gttacttttt tagatttgaa
    15121 aacgatttgt tggtgagatt ccgcattaaa gaaatccgct gtttttaagt ggttgtcacg
    15181 atcagcattt tttgtgtcga ttgagttgac attaattgtt acaacagatt gtaatgagct
    15241 taagtcatta atatctcctg tcacgtcaac tgtgtaatcg tgaaatgttc ctttaacttt
    15301 tgaaaccatt aagtggcgga ttgaaaactc caaattactg tgtactggat cgaatttaag
    15361 gttagtcata gaaagaccct ccgtgtaaaa tatttttaat t
//
LOCUS       DANHOL010000056        15331 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.056, whole genome shotgun sequence.
ACCESSION   DANHOL010000056 DANHOL010000000
VERSION     DANHOL010000056.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 15331)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15331)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15331
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.056"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            <1..333
                     /gene="fosB"
                     /locus_tag="PTC08_001221"
     CDS             <1..333
                     /gene="fosB"
                     /locus_tag="PTC08_001221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallothiol transferase FosB"
                     /protein_id="HDK5682734.1"
                     /translation="LVEGKHTAYFTLGGVWLALNEEKNISRNEIKQSYTHIAFSISES
                     DFDSWYYWLKCNQVNILKGRERNIKDKQSIYFTDHDGHKIELHTGTLQERLDYYQQEK
                     THMKFFKH"
     gene            401..730
                     /locus_tag="PTC08_001222"
     CDS             401..730
                     /locus_tag="PTC08_001222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682735.1"
                     /translation="MIEYEWKHLKPENRESGQFIEVLHPDFKEFGMSGKVYDRSDFEC
                     IELHVAEYEISDFQVDHLAEDCRLCTYTLIDHTRHIKTNRTSIWKMHEGDWKLLFHQG
                     TVKQDPY"
     gene            complement(835..1611)
                     /locus_tag="PTC08_001223"
     CDS             complement(835..1611)
                     /locus_tag="PTC08_001223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1828 domain-containing protein"
                     /protein_id="HDK5682736.1"
                     /translation="MESIEQKMNEYFKWMKQNYKYKKLEDSTEITTPFINPLNDYIRI
                     YLDVLPNNDIRLSDDSLTMNELELAGIDIHTKARSILIQNVLNQFNLVLDGEEIVTNV
                     KNNSFAQSKHNLIQGILKIYDLTLTTKSNVSRLFYEEVFDFLYNEEILGSAKVSVSGE
                     SGIKYFIDFILPETKSKPEKLINFANHLDFNKVTTDAFMYRDVKHNRPSRSGLAPQML
                     IVANDVEHPITAKARQAAEHEHLSILHWSDKDRIKAILTQ"
     gene            complement(1643..1870)
                     /locus_tag="PTC08_001224"
     CDS             complement(1643..1870)
                     /locus_tag="PTC08_001224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000617704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682737.1"
                     /translation="MIRFDVNGSDHANPPNFDRIPTPHLHIMTDEYKNGTIAIPLYDI
                     QNIELINEMIDALDFFMDYTKIKKDNIIIKP"
     gene            2661..3884
                     /locus_tag="PTC08_001225"
     CDS             2661..3884
                     /locus_tag="PTC08_001225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-lactamase family protein"
                     /protein_id="HDK5682738.1"
                     /translation="MNKRKTSRFTYFIMSVSIIAIFVSGCYLYYQFKHLNEEDPLTIQ
                     DRKQQRQAHTAEKSQEIKPLETIVDQQNPVFNMIDRYLESVQFNGTIAVFENGHLKMD
                     KGYGYQDFEKQKKNSPNTVYLIGSAQKFLTGIIVKKLELENKIHVEDSVSTYIPDFQL
                     PQDVTIKDLLMHQSGFYKYQGSDDISDLDGAIKAIEARGIDPKFYHKHFYNDANYLVL
                     AKVIENVTGQSYVQNYYRYIGNPFRLMHTSFFDDERYKEDMAKGYRLDKKTHNVVFRE
                     PHYLNQYYGAGNLYMSAHDMGVLVRKLQTNRIFPEKITLPYIHEFMTPRYPEKYRYGF
                     YVYNNFNRINGIFFGQIFTTYYNDKYIIVLGTNYDQPKPNNNEARIKHIYFDILNQHA
                     IINQPGITVPVPKSS"
     gene            complement(3941..4312)
                     /locus_tag="PTC08_001226"
     CDS             complement(3941..4312)
                     /locus_tag="PTC08_001226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbgA family protein"
                     /protein_id="HDK5682739.1"
                     /translation="MKETTKIQHTWRYQKYNVMMRNYKDYQRIQALIKQGASFKVVDA
                     TIQEILIKPIEHPAFMNTFQHLWGYFKKIATPSEKERYTTLLKQLDMQAVAYDKCIQF
                     IQHLTLKYEQPYLLQSAIMKL"
     gene            complement(4323..4811)
                     /locus_tag="PTC08_001227"
     CDS             complement(4323..4811)
                     /locus_tag="PTC08_001227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDK5682740.1"
                     /translation="MIKILTHNDLNQFKQLINDAQLIETNPNHYEVELTPEDIAALFH
                     PDNQARTVLLGAFDADALVGFIQLNYNSQLTKRHKAVIEHLYVVPQYRSEGVAQQLLE
                     VLIPHAKENGIENIFISVASNNIAAKIFYDNFGFEFLALEENARKINGHYIEDHWLIY
                     YT"
     gene            complement(5234..5653)
                     /locus_tag="PTC08_001228"
     CDS             complement(5234..5653)
                     /locus_tag="PTC08_001228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002503427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ohr family peroxiredoxin"
                     /protein_id="HDK5682741.1"
                     /translation="MGIIYQTTATNTGGRKGHVQTDDNKLEFRLAPPDNAKEDETNPE
                     QLFATGYASCFNGAFDLILKRNGFRKAEPVVDLTVKLMDDPNSESPMLGVDIQAKVKN
                     MSQEDAEKCLEEAHAFCPYSKATNGNIEFSMNVTVED"
     gene            5802..6806
                     /locus_tag="PTC08_001229"
     CDS             5802..6806
                     /locus_tag="PTC08_001229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-2-hydroxyacid dehydrogenase"
                     /protein_id="HDK5682742.1"
                     /translation="MTKILVFDVREDELPALEQWKAVHQDDVEVELIEAQLDASHLVK
                     LADVDGISISQTTQFDSQFYKVLAENGIFHIAQRSAGYDQFDLEAANLENIKISNVPS
                     YSPQSIAEFAVTRTLELVRHTAQIDRNMAQNDFTWNLNLQGRTVESLKIGVLGTGRIG
                     SRAAKIFKGFGSEVLAYDIAPDEALNDVVTYVDSLEKLISQVDVLTLHIPGSKENHYL
                     INEDVLKQAKPGLLLINAARGSVVDTTALIRSIEAGHVAGVAIDTYENEGAYFRHDWG
                     GRELEDETLKALLNHEKVLLSPHVAFYTDEAVKNLVDIPLNDVLSFIRTRQAENIVNP
                     "
     gene            6827..7552
                     /gene="aroD"
                     /locus_tag="PTC08_001230"
     CDS             6827..7552
                     /gene="aroD"
                     /locus_tag="PTC08_001230"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I 3-dehydroquinate dehydratase"
                     /protein_id="HDK5682743.1"
                     /translation="MKTQIVASLMPLSPTLTPEELHDIERYANDFDILELRIDGIPNC
                     EIAVVEKMVQQIVALPVTFELLVTYRTSQQGGKGILSTDGYLQLLRRLASLDKIDFID
                     IEWEPDQDARRQVVEAIHQGGKVSIASYHNFEMTPTIEVLKKTYYHMSKLGANHLKVA
                     VMPKTRQDVLTLLQALSEANEALQQWVTGISMGQLGLISRTAQNTFGGALSYGALSDS
                     VAPGQLHVQTLAQVLPLYSLFES"
     gene            7607..8152
                     /locus_tag="PTC08_001231"
     CDS             7607..8152
                     /locus_tag="PTC08_001231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase"
                     /protein_id="HDK5682744.1"
                     /translation="MELQEAIKSRRSIKKFERDMYIDESALKKAIYEAADAPNHGMRE
                     PWRVVYVPKHKLGEMSREVSRYAFPRDHEKQQSHYDAVTNLGGFLAIVMKCDARQREE
                     NENYLAVGAFAQNLLLLLYEKGIGTCWKTPEYIFKPKVRAAFGVGPDEKLIGFLYLTD
                     LKEEDKFRKVPRKNKAMITEF"
     gene            complement(8282..8602)
                     /locus_tag="PTC08_001232"
     CDS             complement(8282..8602)
                     /locus_tag="PTC08_001232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HDK5682745.1"
                     /translation="MQSITTMDAFNQVIQSNEPVIIKFEAGWCPDCRAMDMWIDPIVE
                     KYNQYEWYAVNRDELEDAATQYEVMGIPSLLIFQNGEKLHHLHSANAKSPEQVESYLA
                     ESLG"
     gene            8886..9242
                     /locus_tag="PTC08_001233"
     CDS             8886..9242
                     /locus_tag="PTC08_001233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002479305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenate reductase family protein"
                     /protein_id="HDK5682746.1"
                     /translation="MIKFYQYPNCTTCKKAAKFLSDNGVSFEPIDITQHTPTKEEFRQ
                     IIQKSDLEIKKFFNTHGAKYKELNLKDRLGEMSDEEKLELLASDGMLVKRPLAVSGDT
                     VTVGFKEADYRDIWVS"
     gene            9316..9696
                     /gene="gcvH"
                     /locus_tag="PTC08_001234"
     CDS             9316..9696
                     /gene="gcvH"
                     /locus_tag="PTC08_001234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system protein GcvH"
                     /protein_id="HDK5682747.1"
                     /translation="MAVPSGLKYSKEHEWVKVEGNTAIIGITDFAQSELGDIVFVELP
                     EVEDELTEGETFGSVESVKTVSELYSPVSGKVVAVNENLEDAPEAVNESPYEEAWMVK
                     VELKDESELDALLDAAGYEKMIGE"
     gene            9775..10170
                     /locus_tag="PTC08_001235"
     CDS             9775..10170
                     /locus_tag="PTC08_001235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toprim domain-containing protein"
                     /protein_id="HDK5682748.1"
                     /translation="MTMIHKVIVVEGKSDKKRVQEVLLEPVEIICTHGTMGIEKLDNM
                     IEYLYDKQVYILVDADAEGRRIRKWFTTYLSESTGIFIDTKYSEVARCPRDYLSNVLQ
                     HFDFKVKQDFYVKGKYSYHECFKAIEQYI"
     gene            10136..10453
                     /locus_tag="PTC08_001236"
     CDS             10136..10453
                     /locus_tag="PTC08_001236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HDK5682749.1"
                     /translation="MSVSKQLNNISKHFDQSVHLIFGYTPMCGTCKIAERMLDISNEI
                     TQLPIVKLDLNYHPEWSQEKEIQSVPILIIMRYDQEVERLYAFHSVPYLLEKFKKVID
                     DSE"
     regulatory      10491..10600
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00162"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="SAM riboswitch class I; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="S-adenosylmethionine"
                     /db_xref="RFAM:RF00162"
     gene            10696..11724
                     /locus_tag="PTC08_001237"
     CDS             10696..11724
                     /locus_tag="PTC08_001237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter ATP-binding protein"
                     /protein_id="HDK5682750.1"
                     /translation="MITLKNIVKKYESKTKSVTAVDGVNLEIEKGKIYGIIGFSGAGK
                     STLVRLFNHLEKPTSGEVIIGGDNIGQLSPDELRRKRQKVSMIFQHFNLLWSRTVLEN
                     IIFPLEIAGMPKNEAKRRAQELISRVGLQGREHAYPSELSGGQKQRVGIARALANDPE
                     VLLCDEATSALDPQTTDEILDLLLQLKTEKNLTIIMITHEMHVIRRICDEVAVMENGR
                     VIEEGKVSHIFEHPQHQVTRRFVQEDLKPSDDSEDLAKTFKLDKDEVLAKLIFSGENA
                     THPVVSHLTQKHGISVNILEGNIKHSKTGTLGYLLLHIEQFSSINFDQIQAELRAQNV
                     EIEVVSHG"
     gene            11717..12412
                     /locus_tag="PTC08_001238"
     CDS             11717..12412
                     /locus_tag="PTC08_001238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDK5682751.1"
                     /translation="MGKSFSEILQEMITMPNVRWPDVWEATYETLYMTVISTAFSFVL
                     GLILGVILFLTSKSETKIGRVFYNIVSFVVNLFRAIPFIILILLLIPFTSLVLGTISG
                     PTGALPALIIGASPFYGRLVEIALKEIDKGVIEAARSMGATTWNIVLKVLIPESLPAL
                     ISGITVTAIALVGSTAVAGVIGAGGLGNLAYLTGFTRNQNDVILVSTILILILVFLIQ
                     FLGDWITNRIDKR"
     gene            12432..13253
                     /locus_tag="PTC08_001239"
     CDS             12432..13253
                     /locus_tag="PTC08_001239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HDK5682752.1"
                     /translation="MKRILSIIVILALAIGLAACGNKSAEKKDDKKIVVGASPAPHAE
                     ILEQAKPLLKDKGYDLEIKTINDYTTPNKLLDAGELDANFFQHTPYLDTEKKEKGYKI
                     ESAGDVHIEPMAVYSHKYKRLKDLPNGAEIFVSNNPAEQGRFLKFFVDAGLIKIKDGV
                     KIQNATFDDIVENKKDIKFNSKQAAEFLPKTFQNDEGDAVIINSNFAIEQKLNPQKDS
                     IAVEKGEDNPYANLIAVKEGHKDDEKIKALMEVLHSKDIKDFIKKKYDGAVLPAE"
     gene            13382..14200
                     /locus_tag="PTC08_001240"
     CDS             13382..14200
                     /locus_tag="PTC08_001240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HDK5682753.1"
                     /translation="MKKLSVLFMAIAAFVVVLAACGKGNNESDDKKIVVAATPTPHGQ
                     VAKKAGEIMKKKGYEVEIREVNDYKIPNKLLDKGDVDANLFQHVPYLKAEQKSHGYQI
                     EEVGKVLTTPMAVYSKKHKSLKDLPDGAKIYISNNPAEEGRFLSFFVKAGLIKIKDGV
                     KIEDAKLDDIVENKKHLEFDNQQGAEFLPKTYNNGEGDAVIMNSNYAIDNGLKPLKDS
                     IAVEDESSPFANILAVQKGHKNDEKYQEFLKALQSDEVRDYINKEFDGAVIPAK"
     gene            complement(14497..>15331)
                     /locus_tag="PTC08_001241"
     CDS             complement(14497..>15331)
                     /locus_tag="PTC08_001241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF368 domain-containing protein"
                     /protein_id="HDK5682754.1"
                     /translation="PRGFAMGVSDLIPGVSGGTIALLLGIYDDFIQSVSGVFSKNFKK
                     SILFLLPIVIGMGLAIGILSSVINYLLAKHPVPTMFFFFGLILGIIPFLLRISRYRQT
                     YQIQHWLVMLVCVIILASMAFFKGDSNHAVPSHIDVSGPMLIKYLIAGICASSAMLLP
                     GISGSFVLLLFGVYSTVTFSISEAVRFNFEGLPVILLVGVGVVIGFVIASKIITFLLE
                     HYTYLTYAAILGLVIGSLFSVFPGLPTSGLSWLVSIVTLIIGFVISYVLGLFTSEVET
                     K"
BASE COUNT         5143 a         2403 c         3050 g         4735 t
ORIGIN      
        1 ttagttgaag ggaagcatac agcttatttt acactaggag gtgtttggtt agcactaaac
       61 gaggaaaaga acatatctag aaatgagata aaacaatcat acacacatat tgcattttct
      121 ataagtgaaa gtgactttga cagttggtac tattggctaa agtgtaatca agtgaatata
      181 ttaaagggga gagaaagaaa tataaaagac aagcaatcga tttattttac agatcatgat
      241 ggtcataaaa tagagttaca taccggtact ttacaagagc gtttagacta ttatcaacaa
      301 gaaaaaacac atatgaaatt ttttaagcat taaacacgaa tcacttttat taaggaagtg
      361 atggtgctgt taatacacaa ttacttgaag gaggcattaa ataattgaat acgaatggaa
      421 acatttgaag cctgaaaatc gggaaagtgg gcaatttatt gaggttttgc atccagattt
      481 taaagagttt ggtatgtcgg gaaaagtgta tgataggagt gactttgaat gtattgaatt
      541 acatgtagct gagtatgaaa taagtgattt tcaagttgat catttagcag aagattgtag
      601 attatgtaca tatactttga tagatcatac gcggcacatt aagacaaata gaacatcaat
      661 ctggaaaatg catgagggtg attggaagtt attgtttcat caaggaacag tgaaacaaga
      721 tccatattaa catggaaaag cacctaagac tttgagaaag tctaggtgca gttttattct
      781 tagctggaaa tattgaattg gagttatttc aactttgaat cttctgttat tactttactg
      841 tgtcaaaatg gcttttatcc tatctttatc tgaccaatgt aatattgaaa gatgttcatg
      901 ctctgctgct tgacgggctt tagctgtaat tggatgctca acgtcatttg cgacgatgag
      961 catttgaggg gctaatccgc ttctactagg tctattatgt ttaacatctc tgtacataaa
     1021 agcatcagtc gtcactttat taaaatctag atggtttgca aaattgataa gtttttcagg
     1081 ttttgatttt gtttccggta aaatgaaatc aataaaatat ttgattcctg attctcctga
     1141 aactgaaacc tttgccgaac ctagaatttc ttcgttgtat aaaaaatcga atacttcttc
     1201 ataaaagagt cgtgacacat ttgactttgt cgttaatgtt aaatcatata tttttaaaat
     1261 cccttgtatc aagttatgtt ttgactgagc gaaactatta tttttgacat tagtgacaat
     1321 ttcttctcca tctaaaacga ggttaaattg gtttaacaca ttttgaatga gtatacttct
     1381 ggcttttgta tgaatatcaa tacctgcgag ctcaagttca ttcattgtta aactatcgtc
     1441 agataatcga atgtcgttat tgggtaatac atcaagatat attctaatat aatcatttaa
     1501 agggttgata aacggtgtag ttatttctgt tgaatcttct aattttttgt atttatagtt
     1561 ttgtttcatc catttaaaat attcattcat tttttgttca atgctctcca tatgcaattc
     1621 actcctttct gctttaaagt gattatggct tgatgatgat attgtctttt tttattttag
     1681 tataatccat aaaaaaatct agagcatcta tcatctcgtt aatcagttca atattttgta
     1741 tgtcgtataa tggtatagca atagtcccgt ttttatattc atcagtcatg atatggaggt
     1801 gtggcgtagg tattcggtca aagtttggag gattggcatg atcacttcca tttacgtcaa
     1861 atcgtatcat agtgctattt tgattcatac tgtatagcat tattgtaagg ttatcgggat
     1921 ttttatgacc tcgtttatta atgattaatt taaatctttc agcgtcatcg ataatatgaa
     1981 tcaaatggtg ctgaatttgc tctccaactc tcggtaagtt gacaatattt ttttcgaaga
     2041 cctttatttt acacattaat tgttcgtata tttctttttc cataggcatt ctcctttatt
     2101 aatgtttcat tgtgatttgc tgatgtggga cggattagat tgaaaatagt agctgaaaat
     2161 tgtcatatcg tgtggataca atgaatttaa aatgtagtca atcaaaaact tgagttaaag
     2221 gtaggtggat tgaacggagg ttgaggcaac tggaatattt acatcaatat tatattgtgc
     2281 ttcttatatt tgcaagtctc aatttgaagg attgaattgc gcttggaatg atttaagtca
     2341 gccaaaatcc aaggcgtaat aggactaaat aacgaccttt tttgcatgaa agatggagga
     2401 tatatccgaa gtcatcgcaa gtttatcatt tcacaatagc gttacacgat aaaaacataa
     2461 aatcattttt aaattcgata tatttcatgg tacactttat acaatacaat tgctcaaatg
     2521 tttcaataga gggacatatc attaaacagc gaagtattac accaacactt caattctcct
     2581 aatttgatga tacctttagt agttaacgct tcagttaatg aataggtaaa agtggagaat
     2641 gatagaggag tagaacaaat gtgaacaaaa gaaaaacatc tcgattcact tatttcatca
     2701 tgagtgtttc aattattgcc atattcgtaa gtggttgtta tttatactat cagtttaaac
     2761 atttgaatga agaggatccg ttgacgattc aagataggaa acaacagcga caagcgcata
     2821 cagctgaaaa atcacaagaa atcaaaccac ttgaaacaat cgttgatcaa caaaatcctg
     2881 tatttaatat gattgatcgg tatttagaaa gtgtccaatt caatggaact atagcggtgt
     2941 ttgaaaatgg tcatttaaaa atggataagg ggtatggtta tcaagatttt gaaaaacaaa
     3001 agaaaaatag tcccaatacg gtttatttaa ttggttcagc tcaaaagttt ttaacgggta
     3061 tcatcgttaa aaagttagaa cttgaaaata aaatccatgt tgaagattca gtgtcaacct
     3121 atatacctga ctttcaatta ccacaagatg taacgattaa agacttacta atgcatcaaa
     3181 gcggttttta taaatatcaa ggttcagatg atatttcaga tttagatggg gcgattaaag
     3241 ccattgaagc acgtggtatc gaccctaaat tttatcacaa acatttttat aacgatgcca
     3301 attatcttgt gttggctaaa gtgatcgaaa atgtaacagg acaatcttat gttcaaaatt
     3361 attatcgtta tattgggaat ccatttagat taatgcatac gagcttcttt gatgatgaac
     3421 ggtataaaga ggatatggcg aaaggatatc gattagataa aaagacacac aatgttgtct
     3481 ttcgagagcc gcattattta aatcaatatt atggtgcggg gaacttatat atgtcagcac
     3541 acgatatggg tgtgttggtg agaaagttac agacgaatcg tatatttcct gaaaagatta
     3601 ccttaccata tattcacgaa ttcatgacgc cacgttatcc tgaaaaatat cgttacggtt
     3661 tttatgtata taataatttc aaccgcatca atggtatttt cttcggacaa atatttacga
     3721 cgtattacaa cgataaatac attattgtgt taggtacgaa ctatgatcaa cctaaaccga
     3781 acaacaacga agcacgtatt aagcatattt attttgacat tttaaatcag catgcgatta
     3841 tcaatcagcc tggtatcaca gtgccagtgc cgaaatcgtc ataaatcgac acaataaaaa
     3901 cgcaatgaat ctcatcatca aaggttcgtt gcgtttctta ttatagtttc atgatagcac
     3961 tttgaagtaa ataaggttgt tcatatttta gcgtgaggtg ctggataaat tgaatacatt
     4021 tgtcatatgc tactgcttgc atgtcaagtt gtttgagtaa agtggtatac ctttcttttt
     4081 ctgagggtgt cgcgattttt ttgaaataac cccataaatg ttggaatgta ttcataaacg
     4141 cgggatgttc aattggtttt attaaaatct cttgaatggt tgcgtctacc actttaaaag
     4201 aggcgccttg tttgattagt gcttgaattc tttgatagtc cttatagtta cgcatcatga
     4261 cgttgtattt ttgatagcgc caagtatgtt gaattttcgt cgtttctttc attttacacc
     4321 tcttatgtat aataaatgag ccaatgatcc tcaatgtaat gcccattaat cttacgtgca
     4381 ttttcttcta aagctagaaa ttcgaaccca aagttatcat aaaaaatttt tgcggcaatg
     4441 ttgtttgatg cgacagagat gaagatgttt tcaatgccat tctctttggc gtgagggatg
     4501 aggacttcta ataattgttg ggcaacccct tcacttcgat attgaggtac aacatataaa
     4561 tgttcaatga ctgctttatg acgtttcgta agctgtgaat tgtagttaag ctgaatgaaa
     4621 ccgactaatg catcagcgtc aaatgcacct aatagtactg tgcgtgcctg attatctggg
     4681 tgaaataaag cagcgatgtc ttcaggtgtg agttcaactt cataatgatt gggatttgtt
     4741 tcaatcagtt gcgcgtcgtt gatgagttgt ttaaattgat tcaaatcgtt gtgcgtcaat
     4801 atttttatca ttgcgccacc tccagtttac ttcaatccga tatctcacta ttaatcataa
     4861 acaaataaaa ttgtaaattc aacgttattt aagaattttc tgaattcaaa aaacatattt
     4921 atacaaataa tgctgtttat ctttattaaa atttaccttt caatccatat cgtgtcgtgt
     4981 ttaaagacag tgtgaataag caagacaagt taaaggtatg atagcagtga gtgaacaaaa
     5041 ttcggtatca tatcaataat ggtggcacat gtgagtgatg tggttcagca ttttcctaat
     5101 gaaaagagca atcccactat gaaagtagca ttgctcttgg agattgctga aagcgtctcg
     5161 attgatgagt ctccaatgac tcggaaattg agatttgacc tagcaaactt tattaatatt
     5221 ttaagaaaat gatttaatct tcaactgtca cattcatgct gaactcgata ttaccatttg
     5281 ttgcttttga atatggacag aatgcatgtg cttcctctaa gcatttttcg gcatcttctt
     5341 gtgacatgtt tttaactttt gcttgaatgt ctacacctaa cattgggctt tctgaattag
     5401 ggtcatccat taatttcact gttaaatcta cgaccggttc agctttacgg aaaccgttac
     5461 gttttaaaat taaatcaaat gcaccattga agcatgacgc ataacctgtc gcaaataatt
     5521 gctcaggatt tgtttcgtcc tctttcgcgt tatctggtgg tgctaatcta aattctaatt
     5581 tattgtcatc tgtttggacg tgccctttac gtccgccagt gtttgttgca gttgtttgat
     5641 aaataatacc catcatgaat acctccttat ttttaatgct tcatcctatg atttacccga
     5701 tgaaatagtt ttttaatcat cacacctttt caagataaaa agaataggct atagttattt
     5761 tattcagaat taactgacat ttgtagtggg aggaatgaac aatgacaaaa attttagtgt
     5821 ttgatgtaag ggaagacgag ttaccagcat tagaacaatg gaaagcagtg catcaagatg
     5881 atgttgaggt ggaattgatt gaagcacaat tggatgcgtc acatttggta aaattagcgg
     5941 acgtggatgg tatttcaatt tcgcaaacga cgcaatttga tagccaattt tataaagtgt
     6001 tagcagaaaa tgggattttt catattgcgc aacgttcggc cggctacgat caatttgatt
     6061 tagaggccgc aaatcttgaa aatattaaaa ttagtaatgt acctagttat tcgccacaat
     6121 cgattgctga attcgctgtg acacgtacgt tagagttagt gcgacatacg gcacaaattg
     6181 accgtaatat ggctcaaaat gatttcacgt ggaatctaaa tttacagggt cgtacggtgg
     6241 aatccttgaa aattggtgtg ttaggcacag ggcgtattgg aagtcgtgca gctaaaatat
     6301 ttaaaggatt cggttcagaa gttttggcct atgatattgc accggatgaa gcactaaacg
     6361 atgttgtgac atatgtagac agtctcgaaa aactcatttc acaagtcgat gtgttaacac
     6421 ttcatattcc tggttctaaa gaaaatcatt atttgattaa tgaagatgtt ttaaaacaag
     6481 cgaaacctgg attgttactc attaatgccg cacgtggcag tgtagtggac acgacagcgt
     6541 taatccgcag tatagaagcg gggcatgtcg caggagtagc cattgatacg tatgaaaatg
     6601 aaggggcata cttcagacat gactggggcg gccgcgaatt agaggatgag actttaaagg
     6661 cgctattgaa tcatgaaaaa gtattgctct caccacatgt cgcattttat actgatgagg
     6721 ctgtgaaaaa cttagtcgac attccattaa atgatgtttt atcatttatt cgtactcgac
     6781 aagcagaaaa tattgttaat ccataaagag aaaaggtgaa acagaattga aaacacaaat
     6841 tgttgcgagc ttaatgcctt taagccctac attgacccct gaggaattgc atgatatcga
     6901 acgttacgcg aatgatttcg atattcttga gttgcgcatt gacgggattc ctaattgtga
     6961 aatagcggtg gttgaaaaga tggttcaaca aattgtcgcg cttcccgtta catttgagtt
     7021 gctagtgacg tatcgaacgt ctcaacaagg gggtaagggc atattatcaa cagatgggta
     7081 tttacagtta ttgcgtcggt tagcctcgtt agacaaaatt gactttattg atattgaatg
     7141 ggaacctgat caagatgcac gtcgtcaagt ggttgaagcg attcatcaag gtggaaaagt
     7201 gtcgattgcg tcttatcata attttgaaat gacccctacg atagaggtgc ttaagaagac
     7261 gtattatcat atgtcaaaac taggagcgaa tcatttaaag gttgcagtga tgcccaagac
     7321 acgacaagat gtattaacat tgttacaagc attgagtgag gcaaacgaag cgttacaaca
     7381 atgggtgaca gggatttcga tggggcaact cggactgatt tctagaacgg cacaaaacac
     7441 gttcggtggt gcgttgtctt atggtgcatt gtctgacagt gtcgcaccag gacagcttca
     7501 tgtacaaacg ttagcacaag tattgccgct atacagttta tttgaaagtt aaaatactgt
     7561 cgtttataat tgataatgat tatcaataat tgaggggtag ataggaatgg aacttcaaga
     7621 agcgattaaa tcaagaagaa gtataaagaa gttcgaaaga gatatgtata tcgatgagtc
     7681 agctttaaaa aaagcaattt atgaagcggc agatgcacct aatcatggta tgcgagagcc
     7741 ttggcgtgtc gtgtatgtac caaaacataa actgggcgag atgagtcgtg aagtgtcacg
     7801 ttatgccttt ccaagagatc acgaaaagca acaaagtcat tatgatgcgg taacgaactt
     7861 gggtggcttt cttgcgattg tgatgaaatg tgacgcaaga caacgagaag agaatgaaaa
     7921 ctatcttgca gtcggtgctt ttgcgcaaaa cctgcttcta ttactgtatg aaaaaggtat
     7981 cgggacatgt tggaaaacac cagaatatat ttttaaacct aaagtgcgtg cggcgtttgg
     8041 tgtaggtcca gatgaaaagt tgattggttt tctgtattta acagatttaa aagaggaaga
     8101 caaatttcgt aaagtaccgc gtaaaaacaa agcgatgatt acagagtttt aaaggggact
     8161 gtattgtttt acattgttga gactgcatct tcaatcaatg tgaaggattt gtatattaaa
     8221 ataggaagag gctagggcac aattgaaagt actcctagcc tctttctacg atatttgaaa
     8281 actagcctaa actttcagcc aaatagcttt cgacttgttc aggtgactta gcatttgcag
     8341 aatgtaagtg gtgcagcttt tcgccatttt ggaagattaa aagactcgga atacccatca
     8401 cttcatattg cgttgctgcg tcttctaatt catcacgatt aactgcatac cattcgtatt
     8461 ggttatattt ttcaacgatt gggtcaatcc acatatccat cgccctacag tcagggcacc
     8521 aaccggcttc gaatttaatg atgacaggtt cgttactttg aatcacttga ttgaatgcat
     8581 ccatagttgt aatactttgc atgttagacc tctcctttta actgataagt aacgatatta
     8641 taacgaattt tataagagaa gtcacccgta caaattggtg aacagatttt gggacgtaca
     8701 gcgcacactc caaaaatcgt tctgaagtta actcaaaaag taatcgtagt gacggtaatc
     8761 aatttattgc tatttatttg ttatagcgca aaagttgtat atgttgaagt ttgcatgcta
     8821 aaaatacaag cattttaaat aataatttgt tatatttaaa ttaatttgaa cgaggaggtt
     8881 taatgatgat taaattttat caatatccaa actgtacaac ttgtaaaaaa gcggccaagt
     8941 ttttatcaga taatggcgtg agctttgaac ctattgatat tacacaacat acaccgacaa
     9001 aagaagagtt tcgtcaaatc attcaaaaat cagatttaga aataaaaaaa ttcttcaaca
     9061 cgcacggtgc aaaatataag gaattgaatt taaaagaccg attaggtgag atgagtgatg
     9121 aagaaaaatt agaattactc gcatctgatg gtatgttagt gaaaaggcca cttgcggttt
     9181 ctggtgatac ggtcacagtt ggttttaaag aagccgacta tcgtgacatt tgggtgtcat
     9241 aaaatagttg attgaaccgt tgcaatgtgt catgattaac ttgtaaccgt aatcattaaa
     9301 taggagggga ttcaagtggc agtgccaagt ggattaaaat attcaaaaga acatgaatgg
     9361 gtaaaagttg aaggaaatac tgcaatcatt ggtattactg actttgcaca aagcgaactt
     9421 ggggatatcg ttttcgttga gcttccagaa gtagaagacg aattaacaga aggcgaaact
     9481 tttggtagtg tagaatctgt taaaacagta tctgagttat attctccagt atctggtaaa
     9541 gtcgttgcag tgaatgaaaa cttagaagat gcaccagaag cagttaacga atcaccatac
     9601 gaggaagctt ggatggttaa agttgaattg aaagacgaaa gtgaactaga cgcattatta
     9661 gatgcagctg gttacgaaaa aatgattggc gaataatatc aaaatgagaa ctcctgggta
     9721 atttagttat caaggagttt tttatactca aatatttttt agaaggtgaa gaccatgacg
     9781 atgatccata aggttattgt tgttgaaggg aaatctgata aaaaacgtgt tcaagaagtg
     9841 ttgttagagc ctgtcgaaat tatttgtact catggcacga tgggaatcga aaagttagac
     9901 aatatgattg aatatttgta tgataaacaa gtctacattt tagtcgatgc agatgcagaa
     9961 ggtcgtcgca ttcgcaaatg gtttacgaca tatttgagtg aaagtactgg tattttcata
    10021 gatacaaaat atagtgaagt tgcccgttgt ccacgcgatt acctctcaaa tgtattgcag
    10081 cattttgact ttaaggtgaa gcaagacttt tatgtaaaag ggaagtattc atatcatgag
    10141 tgtttcaaag caattgaaca atatatctaa acattttgat caaagtgtac atctgatttt
    10201 tggttacaca ccgatgtgtg gcacatgtaa aatagcagaa cgcatgttgg atatctcgaa
    10261 tgaaatcacc cagttgccga ttgtaaagtt agacctgaat tatcaccctg agtggagcca
    10321 agaaaaagaa attcaatcgg tccctatttt aatcatcatg cgctacgatc aagaagtaga
    10381 gaggctctat gcattccatt ctgtgccgta cttgctagaa aaatttaaaa aagtcattga
    10441 cgacagtgaa tgacgatgat aatataataa tcaatcgaat agtcagaaaa ctcttatcca
    10501 gagtggcgga gggatgtgcc ctatgaagcc cggcaaccgt ctatattata gaaatggtgc
    10561 caattcacat aaagcaacga tttgcttttg aagatgagag aaaagcgttt atattgatgc
    10621 tttctctttt ttctttaaaa gggaaagcat tttttattcc aaatttttta aagtagcaac
    10681 acagggagga acagtatgat cacacttaaa aatatagtga aaaagtacga aagcaagacg
    10741 aaatctgtta ctgctgttga tggtgtcaat cttgaaattg aaaaaggtaa gatttacggc
    10801 attattggat tttcgggtgc aggtaaaagt actttagtcc gtttatttaa tcatttagaa
    10861 aaaccaacct caggggaagt gattattggt ggtgacaata tcggacaatt aagtccagat
    10921 gaattacgac gaaagcgtca aaaggtaagt atgattttcc aacatttcaa tttattgtgg
    10981 tcaagaactg tactagagaa cattattttt ccacttgaaa ttgctggcat gccgaaaaat
    11041 gaagcgaaaa gacgtgcaca agaattaatt tcacgtgtgg gcttacaagg tagggaacat
    11101 gcctatccat cagaattgtc aggaggccaa aagcaacgtg tcggtatcgc gcgcgcattg
    11161 gctaatgatc cagaagtatt gttatgtgat gaggcaacaa gtgcattgga tcctcaaacg
    11221 accgatgaaa ttttagattt attattacag ctcaaaactg agaaaaattt aacaattata
    11281 atgattacac atgaaatgca tgtcattcgt cgtatttgtg atgaagtggc agttatggaa
    11341 aatggccgtg taattgaaga gggaaaagtg tcacacattt tcgagcaccc acaacatcaa
    11401 gtgacacgcc gattcgttca agaggatttg aaaccgagtg atgatagcga ggatttagca
    11461 aaaactttta aattagataa agatgaagtc ttggctaaac tgattttttc tggtgaaaac
    11521 gcaacacacc cagttgtatc acatttaacc caaaaacacg gcatttcagt gaatatttta
    11581 gagggtaata tcaagcattc taaaacgggt acattaggtt atctattgtt acacattgaa
    11641 caattttcga gtatcaactt tgatcaaatt caagcagagt taagggcgca aaacgttgag
    11701 atagaggtgg ttagccatgg gtaaaagttt tagcgaaatc ttgcaagaaa tgattacaat
    11761 gccaaatgta cgttggccgg atgtatggga agcgacgtac gaaacattgt atatgaccgt
    11821 tatttcaaca gcgttttcat ttgttttagg tttaatctta ggtgtgattt tatttttaac
    11881 atccaagagt gaaacgaaaa tcggacgcgt cttttacaac attgtatcgt tcgtggtgaa
    11941 tttattcagg gcgataccgt tcattatttt aattttgctc ttaattccat ttacaagttt
    12001 ggtgcttggt acgattagtg gtccaacagg ggcattacct gcattgatca tcggtgcttc
    12061 accattctat ggccgtttag tggaaattgc attaaaagaa attgataaag gtgttatcga
    12121 agcagcacgt tcaatggggg caacaacttg gaatatcgta cttaaagtgc tgattcctga
    12181 atcattaccc gcgcttattt caggtattac tgtaacagca attgcattag tcggttcaac
    12241 agcggtagcc ggagtgattg gtgctggagg attaggtaac cttgcttacc ttacagggtt
    12301 cacgcgtaac caaaatgatg tcatcttagt atcaactatt ttaattttaa ttttagtatt
    12361 tttaattcaa tttcttgggg attggattac aaatagaatt gataaacgtt aatgattaag
    12421 gagaatgtgg aatgaaaagg attttatcaa ttattgttat tttagcttta gccattggac
    12481 ttgctgcatg tggaaataag tcagcagaaa aaaaggatga caaaaaaatc gttgttggtg
    12541 cttcgccagc gccacatgct gaaatactag aacaagcgaa accattatta aaagacaaag
    12601 gttatgactt agaaattaaa acaattaacg attacacaac gccaaacaaa ttactagatg
    12661 ctggagaatt agatgcaaac tttttccaac atacacctta tttagatact gagaaaaaag
    12721 aaaaaggtta taaaattgaa tcagcaggtg acgttcacat cgaaccaatg gctgtatatt
    12781 ctcacaagta taagcgttta aaagatttgc caaacggtgc tgaaattttc gtttctaaca
    12841 atccagcaga acaaggacgt ttcttaaaat tctttgttga tgcaggttta attaaaatta
    12901 aagacggtgt taaaattcaa aatgcaacat ttgacgacat tgtagaaaat aaaaaagaca
    12961 tcaagtttaa tagtaaacaa gctgcagaat ttttaccaaa aacgttccaa aatgatgaag
    13021 gcgatgcggt aatcatcaac tctaactttg caatcgaaca aaaattaaac cctcaaaaag
    13081 attcaattgc tgttgaaaaa ggtgaagaca atccttatgc aaacttaatc gctgttaaag
    13141 agggccataa agacgatgaa aaaatcaaag ctttaatgga agtgttacat tctaaagaca
    13201 ttaaagattt cattaagaaa aagtatgatg gtgctgtatt gccagcagag taaggtgaga
    13261 tgcacaaata tttaatatga aataaaaaaa caacatgtgg tgtgatgggg aaagtcattc
    13321 aaatgggcta aactttcaca ccctaatcat ttaaaatagg tcagatggga gaggaatgta
    13381 tatgaaaaaa ttatctgtat tattcatggc aattgctgca ttcgtagttg ttttagcagc
    13441 ctgtggtaaa ggaaataatg aaagtgatga taaaaaaatc gttgttgcag caacaccgac
    13501 accccatgga caagtcgcta aaaaagctgg agaaatcatg aagaaaaagg gctatgaagt
    13561 tgaaattcgc gaagtcaatg attataaaat tccgaacaag ttattggata aaggcgatgt
    13621 agatgccaac ctttttcaac acgtacctta tctaaaagct gaacaaaagt cacacggtta
    13681 ccaaattgaa gaagtaggta aagtgttaac aacaccaatg gctgtataca gtaaaaagca
    13741 taaaagctta aaagacttac cagacggtgc taaaatctat atttcaaaca atccagctga
    13801 agaggggcgt ttcttatcat tctttgtgaa agcaggccta atcaaaatta aagatggggt
    13861 taaaatcgaa gacgcaaaat tagatgatat tgtagaaaac aaaaagcatt tagagtttga
    13921 taaccaacaa ggcgcagaat ttttaccaaa aacttataat aatggtgaag gtgatgcggt
    13981 gattatgaac tcaaactatg caatcgataa tggattgaag ccgttgaaag attcgattgc
    14041 agtagaagat gaatcatcgc cgtttgccaa tattttagct gttcaaaaag gacacaaaaa
    14101 cgatgagaag tatcaagagt tcttaaaagc attacagtca gatgaagtgc gcgattatat
    14161 taacaaagag tttgatggtg ctgtcattcc tgcgaagtaa tgttttggtt cgcatattat
    14221 atacaatgag ttggagaaat aggatgacta tttaaaacgg gtgacacttc cgggatcagc
    14281 tgaagtctca acgcgatttg tcaatatatc gttattattt ttatagaaga cagatgggct
    14341 tttcgggggc agtacagaaa tcttatatgt cacaaagatt tcgtcgtact gtccccgaaa
    14401 gactggctag acttccaaaa gaactattcc gtttttcttc ctactaataa catcaaaaag
    14461 cacacatgat cataatggtt cacgtgtgct tttaatttat tttgtttcaa cttcggaagt
    14521 aaatagacct aagacgtaac tgataacaaa accgataatg agtgttacga tagaaaccaa
    14581 ccatgagagt cctgatgtcg gtaggcctgg gaacactgag aaaagtgagc cgatgacaag
    14641 ccctaatatc gcagcatatg ttaaatacgt ataatgttca agtaaaaatg taatgatctt
    14701 acttgcaata acaaaaccga tgacgacacc gacgccgact aataaaatga caggaagccc
    14761 ttcaaagtta aaacgaacag cttctgaaat agaaaatgtc actgtactgt agacgccgaa
    14821 taataataaa acgaacgagc ctgaaatacc gggcagtagc atcgcacttg atgcacaaat
    14881 cccagctatt aaatatttta tcaacatcgg tcctgataca tcgatgtgtg aaggtacagc
    14941 atgattacta tcgcctttga aaaatgccat tgatgctaaa ataatgacgc agacaagcat
    15001 aacgagccaa tgctgaatct gatatgtctg tctatatctt gagatgcgca ataaaaatgg
    15061 aataatccct agtatcagtc caaagaaaaa gaacatagtc gggacaggat gcttcgctaa
    15121 taagtaatta ataacactac ttaaaatacc gattgctaag cccataccaa tcactatcgg
    15181 taataaaaat aaaatactct ttttaaaatt ttttgagaaa acaccactta cagattgaat
    15241 aaaatcatca tatattccga gtaataacgc aattgtaccg ccacttacac ctgggattaa
    15301 atcactgaca cccattgcga aaccacgagg a
//
LOCUS       DANHOL010000057        14904 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.057, whole genome shotgun sequence.
ACCESSION   DANHOL010000057 DANHOL010000000
VERSION     DANHOL010000057.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 14904)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14904)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14904
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.057"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(<1..212)
                     /locus_tag="PTC08_001242"
     CDS             complement(<1..212)
                     /locus_tag="PTC08_001242"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDK5682755.1"
                     /translation="MNIFKKSRDRYHLSLDYVSKKTGISIHVINRLENDKINNINYSS
                     EITCLAEFYDLALTDVHSNISPQSSF"
     gene            complement(871..2412)
                     /gene="guaA"
                     /locus_tag="PTC08_001243"
     CDS             complement(871..2412)
                     /gene="guaA"
                     /locus_tag="PTC08_001243"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HDK5682756.1"
                     /translation="MEMAKEQELILVLDFGSQYNQLITRRIREMGVYSELHDHEISIE
                     EIKKMNPKGIILSGGPNSVYEDDAFTIDPEIYHLGVPVLGICYGMQLTTKILGGRVER
                     ANQREYGKAMIKAKSDELFFGLPEEQTVWMSHSDKVIEIPEGFEVIADSPSTQYAAIE
                     DKKRRIYGVQFHPEVRHTEYGNDILRNFVRRVCECTGEWTMENFIDIEIEKIREKVGD
                     RRVLCAMSGGVDSSVVAVLLHKAIGDQLTCIFVDHGLLRKGEGDMVMEQFAEGFNMNI
                     IRVNAKDRFMSKLKGVSDPEQKRKIIGNEFVYVFDDEASKLKGVDFLAQGTLYTDVIE
                     SGTKTAQTIKSHHNVGGLPEDMEFELIEPINTLFKDEVRALGIELGIPEHLVWRQPFP
                     GPGLGIRVLGEITEDKLEIVRESDAILREVIREEGLEREIWQYFTVLPDIRSVGVMGD
                     YRTYDYTVGIRAVTSIDGMTSDFARIDWEVLQKISTRIVNEVDHVNRIVYDITSKPPS
                     TIEWE"
     gene            complement(2435..3901)
                     /gene="guaB"
                     /locus_tag="PTC08_001244"
     CDS             complement(2435..3901)
                     /gene="guaB"
                     /locus_tag="PTC08_001244"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002955225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HDK5682757.1"
                     /translation="MWENKFVKEALTFDDVLLIPAESNVLPKEVDLSVELSDKIKLNI
                     PVISAGMDTVTESKMAIAMARQGGLGVIHKNMSIERQADEVQKVKRSENGVITDPFFL
                     TPEESVYEAEALMGKYRISGVPIVDDKTSRKLVGILTNRDLRFIEDFSIKISDVMTQE
                     DLVTAPVGTTLQEAEEILQAHKIEKLPLVEDGVLQGLITIKDIEKVHEYPYSAKDAHG
                     RLLVAAAIGIAKDTDIRAQKLVEAGVDALVIDTAHGHSQGVINQVKAIKEKYPEITVV
                     AGNVATAAGTKALFEAGADVVKVGIGPGSICTTRVVAGVGVPQITAIYDCATEARNHG
                     KTIIADGGIKFSGDIVKALAAGGHAVMLGSLLAGTEESPGMVEMFQGRQYKVYRGMGS
                     LGAMESGSNDRYFQEDKTPKKYVPEGVEGRIDYKGPLADTIYQLIGGVKSGMGYTGSA
                     NLKALRDEAQFTKMSAAGLAESHPHDVQITKESPNYSF"
     gene            complement(3939..5207)
                     /locus_tag="PTC08_001245"
     CDS             complement(3939..5207)
                     /locus_tag="PTC08_001245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000793018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine permease"
                     /protein_id="HDK5682758.1"
                     /translation="MKRFLLSLQHLLAMYAGAILVPIIVGTSLNFTPEQIAYLVTVDI
                     FMCGVATFLQVYRGIGIGLPVVLGCTFTAVSPMILIGQTKGIDVLYGSLFLSGLLVIA
                     IAPFFASLVKLFPPVVTGSVVTIIGITLMPVAMNYMAGGQGAKDYGDPKHILLGFATL
                     VMILVLQRFAKGFLKSIAILLGLVFGTILASVFGFVDVAQVGQANWFELPKPFRFTGF
                     SFDVGATIVFFIVALVSLIESTGVYHALSKITGKQLERKDFRKGYMAEGIAITLGSIF
                     NAFPYTAYSQNVGLVSLSGVKKNDVIYGMVILLVICGCIPKLGALANIIPLSVLGGAM
                     LAMFGMVMAYGVRILIDINFKNQNNLLIIAISVGLGAGITAVPEAFKGLGDQFAWFTQ
                     NGIVLGTVSAIILNLFFNGINYQQNKENVK"
     gene            complement(5204..5788)
                     /gene="xpt"
                     /locus_tag="PTC08_001246"
     CDS             complement(5204..5788)
                     /gene="xpt"
                     /locus_tag="PTC08_001246"
                     /EC_number="2.4.2.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine phosphoribosyltransferase"
                     /protein_id="HDK5682759.1"
                     /translation="MDALRRKVIEDGVVIDEKILKVDGFLNHQIDAALMYDIGQTFYE
                     QFVDQGVTKILTIEASGIAPAIMVAYRFDVPCLFAKKAKPSTLNAGYYQTDVHSFTKN
                     KTNTVIVSEEFLSADDKVLIIDDFLANGEAAIGLHRLVEQAGATTVGVGILVEKSFQQ
                     GRSRLEEAGLTVSSLCQVASLTGNKVTLVGDTES"
     regulatory      complement(5972..6074)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00167"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="purine riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="guanine and/or adenine"
                     /db_xref="RFAM:RF00167"
     gene            6249..6671
                     /locus_tag="PTC08_001247"
     CDS             6249..6671
                     /locus_tag="PTC08_001247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="general stress protein"
                     /protein_id="HDK5682760.1"
                     /translation="MTLYNISKCEVKRTEDEAVQYVDQLLKEGVKENQIVVLSKDKLN
                     TDRFHDSQIQHKTTTGTISEKFMRFFIGEDGEEAALTKFGFSDEQKEDLKQDILNDKI
                     VVMVQELKYGQEEYENHNVANQKLQDKHAPSEHQGDIE"
     gene            6867..7541
                     /locus_tag="PTC08_001248"
     CDS             6867..7541
                     /locus_tag="PTC08_001248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682761.1"
                     /translation="MHFVHIQSTQDPWYVPALAFYMDKLDPLVTEDESVFEQSLKTEK
                     TQYDFVFLVGIENDEVVSFATAHYEATTNVGFLVYLVSEHGDNCEQYLKATLEQIEKD
                     VNQISNQLHGRDVNFFMFESTFESPDVDTETADKIAFRRRFLVQHGYEKQSDITYLQP
                     SLNRNGKPVPMELYIKANIPLTKDIYGTSIKSAYIIKYVFANRIPRHVIYPLLVKMDL
                     RKEPYA"
     gene            7655..8254
                     /locus_tag="PTC08_001249"
     CDS             7655..8254
                     /locus_tag="PTC08_001249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HDK5682762.1"
                     /translation="MLTKEFAQRSELSEKQVRKIVQHLEERGYHLNKTEYRGREATDF
                     KEEDIELFQEIAERVAQTNSYDLAFEALEKEKDFLQVIVKENDQQLPADQQVPQLIQE
                     LRHEINQMREERQMLGQMVSQVHQQQEELKALHQQLHTQLETSNKSLEALTTAQQQQT
                     EQLSKTQETIETQTKEHQELAETIHRNEKKGFFQRLFGG"
     regulatory      8336..8438
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            8529..9635
                     /gene="thiO"
                     /locus_tag="PTC08_001250"
     CDS             8529..9635
                     /gene="thiO"
                     /locus_tag="PTC08_001250"
                     /EC_number="1.4.3.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine oxidase ThiO"
                     /protein_id="HDK5682763.1"
                     /translation="MKQTLIIGAGVMGLSIARQLNSKHRHIRIIDRSTPRMNASYAAG
                     GMLGAQNEFFEDTPLYRLAMKSRAMMPELAQALERETGVHIEYQQHGLIKVASQPQDV
                     QAVHQQYEFLHHHDHTVTQLSTEQLTQRFPHLDPSQSAAFKIQDDGQINANLYTQALI
                     ASAMQRSHIELMTHTEVYSLQRLHYCYRVETSKGTFEADELIIAAGAWSGALLQQLGF
                     ELPTHPVKGDVKLIASDYAGLKETIFNMNGCYIVPKLPNRFLIGATSDYDCWDTENND
                     DNLAWLDHESVNMIPALRSHHVIKTWTGIRPITEDEIPIMGEIAPQLFVTTGHYRNGI
                     LLSPIAGQLMAQLVDEDSEARHQLAPFRPKIKQI"
     gene            9710..11101
                     /locus_tag="PTC08_001251"
     CDS             9710..11101
                     /locus_tag="PTC08_001251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-cystine transporter"
                     /protein_id="HDK5682764.1"
                     /translation="MSIFLVIINLIIFLLALLSLWVMAKKHVKFPKRVFFALGLGIVL
                     GLLLHLVYGVEGTVTSQTTDWVGLIGNGYIALLQMIVIPLIFVSIVAAFTKIEIGEKF
                     AKVGSFIFMFLIGTVTIAAMIGIIYALAFNLDASSIDLGQAENARSAEIADKAKGLTA
                     TTLPTQILELLPSNPFLDFTGARATSTIAVVIFAAFVGFAFLRVARKQPENGQTLKRG
                     IDAIYALVMAIVTFVLRLTPYGILAIMINTIATSDFAAIWTLGKFVIASYAALITMYI
                     IHLIILAVIGVNPVQYVKKTAEVILFAFTSRSSAGTLPLNVQAQTNRLGVPQAIANFS
                     GSFGLSIGQNGCAGIYPAMLAIMVAPVAGVEVNLQFIVTVIIVVVLSSFGVAGVGGGA
                     TFASILVLSALNLPVGLAGVLISVEPLIDMGRTALNVNDSILAGTGTAKLTKQLDEDV
                     FNSNHMDELTAQH"
     gene            complement(11534..12190)
                     /locus_tag="PTC08_001252"
     CDS             complement(11534..12190)
                     /locus_tag="PTC08_001252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HDK5682765.1"
                     /translation="MIELKNITIQKGKRTIFDNVNLKFEPGKSYALIGHSGSGKSTLL
                     NTIAGFETLKKGEVQLDQKRLKADFRFYRDILGYVFQNYGLVDSMTINQNLDMALAFK
                     KGSRSGKKQLKTHSLQKVGLDIEGKRKVATLSGGEQQRVALARLILKQPRLILADEPT
                     GSLDEANGQKVMELLFDMVDDTRTLIIATHDLTLAQQCDEIIQVDTLKCHSSELETVQ
                     "
     gene            complement(12187..12516)
                     /locus_tag="PTC08_001253"
     CDS             complement(12187..12516)
                     /locus_tag="PTC08_001253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YxeA family protein"
                     /protein_id="HDK5682766.1"
                     /translation="MKKFILAAFAIIVVAVGLFLAFARIPYVDYFNPFLKKETSYAVV
                     PLGTQTYVDIQAYDESGEPLKYRLNFGGYDANFDHVKVLHKGTYVFHIDYIKDLSKWP
                     KKVSVEE"
     gene            complement(12520..14487)
                     /locus_tag="PTC08_001254"
     CDS             complement(12520..14487)
                     /locus_tag="PTC08_001254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1430 domain-containing protein"
                     /protein_id="HDK5682767.1"
                     /translation="MKWLKHLLDVFTLTLISLFLMVLLYEEDSEILTGSQVAIQVEGW
                     DYQYSKAEVFDRFERVAKDLDIAIFKVITDHKKGQVDKAIYTFNKKANHHTITPMNRS
                     YSYQQLTLDDLMKRDVRGDYFILDSVANPHQIKAALESVGLKVAVVPIKRWMIYIDVL
                     INRGVLLPFVTLLIIYILYHLYDRSKNFKTYATMRLHGYHFYNIFFLNIKKIVARWFL
                     LAMGVSLFSIGLLKWLGLDGQLGYFISHLILADIWFWMILFISSLLSYILLVSMNVPL
                     MIKGLKPYRLLHLINHVSKLSMLVLLTLLILPNFNQLKKLEKIQETETWWGKLDDYYM
                     IELKPIRRSINEERNFAKRFHQMIVYSEQHEQALLMRQNVLAEPSETNFVPGNGNVLF
                     VNQNFVDFFKSQLQDLPRLEDREGQVELYLPPQAKTKAAAIRDDFQEWVDFQLPNSAT
                     NTKVKVTQVDNPYQIYAFDVRTGLSTAYLKSPAILMLNAKDLTDDFYYATLSQGTFIF
                     KNYENIIRNIDRFNLKDDVQGVTNYKDNVIKKYREAQTQWIVYSFSSGLAISVLFIVT
                     LLDVLHYFEQHRQWLLMRKMFGFRRWQNYRNYIILNGLFTALIGAFLFEKTQNSNVIW
                     LFAIVLLFQFFVQWVYIHYLEKQFNVLIREV"
     gene            complement(14513..14803)
                     /locus_tag="PTC08_001255"
     CDS             complement(14513..14803)
                     /locus_tag="PTC08_001255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000726503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactococcin 972 family bacteriocin"
                     /protein_id="HDK5682768.1"
                     /translation="MKKKFLSTLTAGLLVVFIGATSLVSAESVHAEGGIWNHGVGSKY
                     VWSYYSHNGKYHTSTAIGKYRSDSGATKPGEEAQASAEKRWWWRNEAYYSVL"
BASE COUNT         4577 a         3134 c         2615 g         4578 t
ORIGIN      
        1 ataaaagaag attgagggct tatattcgaa tgaacatcag ttaaggcaag gtcgtaaaat
       61 tctgctagac aagtaatttc agatgaataa ttaatattat taattttatc attttctaat
      121 ctattgataa catgaataga aattccagtc tttttactta cataatctaa gcttaaatga
      181 tatctatccc tactcttttt aaaaatattc ataattcccc ctccttcatt atttagcaca
      241 cgtatatata tacatgcatt acttacttta ttatacccaa attgtctaat ctgtaaatag
      301 ttttagacta aaagacataa tgatactact gaatacataa gtaaatattg tattaatgca
      361 tactcataat ttgaatttaa agggaggata ttctcgtcat ttaccgtccc cccgcactaa
      421 aaagacaggc gtaagtaaac caccaaatag agcggcgcat acgcttcttt ttagaaattt
      481 ctttttattc atatccacat tgccacaata gcaatatggt tggtgtagta gcctacacat
      541 gacgttgtga tttacgactt ccccaccttg tcaaaacctt agtgaaaact actacgctga
      601 gcttttccca ttatgttgag aattggtggc ttagaataca ctattttgaa gcggggttat
      661 ctatccaaga agtacaagac agattaggac acggcgacat caaaaccaat atggatattt
      721 atgctcacgt cactgaaaaa caacgtgacc aagtggctga aaagttcgca aatgatatca
      781 atttttagca ttaacgtatt caacgccaaa taaaaaaggc tagaaaccgc atcacaacgg
      841 tatttctagc ctgttaattg tattatatca ttattcccac tcgatggtac ttgggggttt
      901 tgatgtgatg tcatacacaa ttctgtttac atgatcgact tcattcacga tacgtgttga
      961 gattttttgt aagacttccc aatcgatacg ggcaaagtca cttgtcatac cgtcgataga
     1021 tgtcactgct cggataccga ctgtgtaatc atacgtacgg tagtccccca tcacacctac
     1081 tgagcggatg tctggtaaca cagtgaagta ttgccaaatt tcacgttcta aaccttcttc
     1141 acgaatcact tcacgtaaga tggcatctga ttcacgtaca atttccaatt tgtcttctgt
     1201 aatttcacct aagacacgga tacctaaacc tggtcctggg aaaggctgtc tccatactaa
     1261 atgttctgga ataccaagtt caatacctaa tgcacggacc tcatctttaa ataatgtgtt
     1321 gattggttcg attaattcga attccatatc ttcaggcaaa ccacctacat tatggtgtga
     1381 tttgatcgtt tgtgctgttt ttgtacctga ttcaatgaca tctgtgtaaa gtgtaccttg
     1441 tgctaagaaa tccacacctt taagtttaga ggcttcgtca tcgaatacat aaacaaactc
     1501 gttaccgata attttgcgtt tctgctctgg atcagacacg ccttttagtt tagacataaa
     1561 acggtctttt gcgttcacac ggatgatatt catgttgaaa ccttccgcaa actgttccat
     1621 gaccatgtct ccttcacctt tacgtaataa accatggtct acaaagatac atgtcaactg
     1681 atcaccaatt gccttgtgta ataatacggc tacgactgat gaatcgacac caccgctcat
     1741 tgcacaaagg acgcgacgat cgccaacttt ttctcggatt ttttcgattt cgatatcgat
     1801 aaagttttcc attgtccatt cgcctgtaca ttcgcaaaca cggcgcacga agttacgtaa
     1861 aatgtcatta ccatactcag tatgacggac ttctgggtgg aattgcacac catagatgcg
     1921 acgcttttta tcttcaatgg cagcgtattg cgtactagga ctatcagcaa tcacttcgaa
     1981 tccttctgga atttcgatga ctttatctga atgactcatc caaacagttt gctcttctgg
     2041 taaaccgaag aacagttcat ctgatttggc tttgatcatc gctttaccat attcgcgttg
     2101 gttcgcacgt tccactctac cgcctaatat tttagttgta agctgcatac cataacaaat
     2161 acctaataca ggtacgccta aatgatatat ttcagggtca atcgtaaacg catcatcttc
     2221 atatactgag tttggaccac ctgataaaat gatacctttt ggattcatct ttttaatttc
     2281 ttcaattgaa atctcgtggt catgtaattc gctgtatacg cccatttcac gaatacgacg
     2341 tgtaattaat tggttgtatt gactaccaaa atcgaggaca agaatcagct cttgttcttt
     2401 tgccatttcc atactctgtg tactccttta tcaattagaa tgagtagttc ggtgactctt
     2461 tagtaatttg aacatcatgt gggtgacttt ctgctaaacc tgctgcactc atttttgtaa
     2521 attgtgcttc atcgcgtaat gctttcaagt tcgctgagcc tgtataaccc ataccactct
     2581 tcacaccacc gataagttga taaattgtat cagctaatgg tcctttgtag tcgatacggc
     2641 cttctacacc ttctggcacg tattttttag gtgttttgtc ttcttggaaa taacgatcgt
     2701 ttgaaccact ttccatcgca cctaatgatc ccataccacg gtagacttta tattgacgtc
     2761 cttggaacat ttcaaccata cctgggcttt cttcagtacc agcaagtaag ctacctaaca
     2821 tgactgcatg gccacctgct gctaatgctt tcacgatgtc gcctgaaaat ttaataccac
     2881 cgtctgcaat gatcgtttta ccgtgattac gtgcttctgt cgcacaatca taaatcgctg
     2941 taatttgagg cacacctaca cctgcaacga cacgtgttgt acagattgaa cctggtccga
     3001 tacctacttt aacaacgtca gcacctgctt caaacaatgc ttttgtacct gctgctgtcg
     3061 ctacgttacc tgcaacaact gtaatttcag ggtatttttc tttaatcgct ttcacttgat
     3121 taatgacacc ttgtgaatga ccgtgtgctg tatcgatgac taatgcatcc acacccgctt
     3181 ctactaattt ttgtgcacgg atgtcagtgt cttttgcaat accaatcgct gcagctacaa
     3241 gtaaacgacc atgcgcatct tttgctgagt atgggtattc gtgtactttt tcaatgtctt
     3301 taattgtgat taatccttgt aatacaccat cttcaacaag cggtaatttt tcaattttgt
     3361 gtgcttgtaa aatttcttcc gcttcttgta atgttgtccc aactggagct gtaactaaat
     3421 cttcttgtgt catgacatca gaaattttaa ttgaaaagtc ttcaataaat ctcaagtcac
     3481 ggtttgtcag gataccaaca agtttacgtg atgttttatc gtcgacgata ggcacacctg
     3541 aaatacggta tttacccatt aatgcttctg cttcataaac actttcttct ggtgtaagga
     3601 agaacggatc tgtgattaca ccattttctg aacgtttaac tttttgtact tcgtctgctt
     3661 ggcgttcgat gctcatattt ttgtgaatga cacctaaacc accttgtctt gccattgcaa
     3721 tcgccatttt agactctgta actgtgtcca ttcccgctga aatcacaggg atgtttaact
     3781 tgattttgtc tgataactct acacttaagt cgacttcttt cggtaataca tttgattctg
     3841 ctgggattaa aagtacatca tcaaaagtga gtgcttcttt tacaaacttg ttttcccaca
     3901 tcattattga cagcctccat tcaattttct acctattatt atttcacatt ttctttgttt
     3961 tgttgatagt ttataccatt aaaaaataaa ttcaagataa ttgctgaaac cgtacctaac
     4021 acgataccgt tttgtgtaaa ccatgcgaac tgatcgccaa gccctttgaa tgcttctgga
     4081 actgctgtaa ttcctgcacc taaaccaact gaaatcgcga taatcaataa gttgttttgg
     4141 tttttaaagt taatatcaat caaaatacgt acaccataag ccatcaccat accaaacatt
     4201 gcaagcatag cgccaccgag tacagataat ggaataatgt tcgcgagtgc gccaagtttc
     4261 ggaatacagc cacaaattac cagtaaaatg accatgccgt aaatgacgtc gttcttttta
     4321 acaccagata atgacactaa accgacattt tgagaataag ccgtataagg aaaggcgtta
     4381 aaaattgaac ctaatgtaat cgcaatccct tcagccatat aaccttttct gaaatcttta
     4441 cgctcgagtt gctttcctgt aatcttactc aaggcgtgat aaacacctgt agattcaatt
     4501 aagctgacta atgcgacgat gaaaaagaca atcgtagcac caacatcaaa ggaaaaacct
     4561 gtgaatctga atggcttcgg taattcaaac cagttcgctt gaccgacttg tgcaacatca
     4621 acaaaaccaa acacactcgc caaaatcgta ccgaacacta agccaagtaa aatcgcaatc
     4681 gactttaaaa acccttttgc aaaacgttgt aacactaaaa tcatcacaag tgtcgcaaaa
     4741 ccgagtaaaa tatgtttcgg atcaccgtag tctttagcgc cctgtccccc tgccatataa
     4801 ttcattgcaa cgggcattaa tgtaattcca atgattgtca cgacacttcc ggtaacgact
     4861 ggcggaaaca gtttaactaa tgatgcgaaa aacggtgcga tggcaatgac caaaagccct
     4921 gataaaaaga gtgaaccgta taacacatcg atgcctttcg tttggccgat taaaatcata
     4981 ggggaaactg ctgtaaaggt acatcctaaa acgaccggca aaccaatacc gatgccgcga
     5041 taaacttgaa gaaaggtcgc cacaccacac atgaaaatat ccactgtcac taagtaagca
     5101 atttgttcag gtgtaaagtt caaacttgtt cctactatta tagggacgag aatggcgcct
     5161 gcatacatcg caagtaaatg ttgtaaactt aataaaaatc gcttcatgat tctgtatctc
     5221 ccactaatgt cactttgttg cctgttaatg aagcaacttg acataacgat gacactgtta
     5281 agcctgcctc ttctaaacgg gagcgacctt gttggaaact cttctctact aaaataccta
     5341 cgccgactgt tgttgcgcca gcctgttcaa ctaagcgatg taacccaatt gctgcttcac
     5401 catttgctaa aaagtcatca ataattaata ctttatcatc tgcagacaaa aactcttccg
     5461 aaacgatgac ggtgttcgtt ttgtttttag taaacgagtg cacatctgtt tggtaataac
     5521 ctgcattcaa cgtgctcggt ttcgcttttt tagcaaatag acaaggtaca tcaaaacgat
     5581 aagccaccat gattgcgggt gcaatacccg atgcctcaat agtcagaatt tttgtcacac
     5641 cttgatccac aaactgttcg taaaaggttt gaccaatatc gtacatcaaa gctgcatcaa
     5701 tttggtggtt taaaaatccg tcaactttaa gaatcttttc atcaatcacg acgccatctt
     5761 caatgacctt tcttctcaat gcgtccactc caattcctcc tcgaaaaaga tatcaaaaaa
     5821 acccaaaact aaagaatagc gtttcaggta tacgagtaag agtcatacaa ttgtaaagtg
     5881 gcactatgtc acgtctaaag acctatcgta gtgatgcgcg gaatatggat accgtacata
     5941 cgcaggcatt gatacagcgc gttacatatt acatagatgt cccattactc atagtcatgt
     6001 cgtttaaggc aacatggtag aaacttctaa agccatattc ttcagattat atgagcgtga
     6061 taaattatta catgatgata gcaaatttaa agtacttacg caatactatc gtactaaatc
     6121 aagtgttttc agaaatttat gtaaattctt gcttattcat gctgtaaacg ccataataag
     6181 aatgtaaccg tttaacacgt aaagaatacg ggtagataaa tataaaacat gagcgggagg
     6241 ttcatagcat gacactttat aacatctcaa aatgcgaagt gaaacgaact gaagatgaag
     6301 cagttcaata tgtagatcaa ttactaaaag aaggcgttaa agaaaatcaa atcgttgtat
     6361 taagcaaaga taaacttaac acagatcgct ttcacgattc tcaaattcaa cataaaacaa
     6421 caacgggtac gattagtgag aaattcatgc gctttttcat tggtgaagat ggtgaagaag
     6481 ctgcgttaac aaaatttggt ttctctgacg aacaaaaaga agatctgaaa caagacattt
     6541 taaatgacaa aattgtggtg atggttcaag aactgaaata tggtcaagag gaatacgaaa
     6601 accataatgt tgcgaaccaa aaactgcaag ataaacatgc cccatctgaa catcaaggcg
     6661 atattgagta atcattcacg cttatcgata gctcttacaa cttcatccaa gatttaattt
     6721 aactttcgta cacctcattg tatcgaaagg attaagtctt gggtgaagta tttatttctg
     6781 gaaattgagt tttgtctccc ctattaattg tgctatttct ctctatatat atgctatact
     6841 aaagccatta agagaggtga agtgacatgc attttgtaca tattcaatca acccaagatc
     6901 catggtatgt cccggcatta gcgttttaca tggataaact agaccccctc gtaacagaag
     6961 acgagtctgt atttgaacaa tccttaaaaa ctgaaaaaac acaatacgat ttcgtatttc
     7021 tcgtaggtat cgaaaacgat gaagttgtca gttttgcgac agcgcattat gaagcgacaa
     7081 caaatgtagg ctttttagtc tatctcgtga gtgagcacgg tgacaattgt gaacagtacc
     7141 ttaaagcgac acttgaacaa atagaaaaag atgtgaatca aatttctaat caactccacg
     7201 gccgagatgt gaatttcttc atgtttgagt cgacatttga atcacccgac gtggatactg
     7261 agacagctga taaaattgca ttccgtcgtc gctttttagt gcaacacggt tatgaaaaac
     7321 aaagtgatat tacttattta caaccttcac taaatcgcaa tggaaagccg gtaccgatgg
     7381 agttgtatat taaagcgaat attcctctaa cgaaagatat ttacggcacg agtattaaat
     7441 ctgcctatat cattaaatat gtttttgcga accgtattcc aagacatgtg atttatccct
     7501 tactcgttaa aatggatttg cgtaaagaac cttatgccta ggcccttgaa atcaaccgtt
     7561 aaagccgtta caatgataga gaggtaagac tgacggttca ctgaacgcac actaccgaca
     7621 gtctaaaaac atgagagaaa ggacctaatg gcatatgcta acaaaagaat ttgctcaacg
     7681 atctgagctt agtgaaaaac aagtccgtaa aattgtccaa catcttgaag aacgcggcta
     7741 tcatttaaac aagactgaat atcgtggacg tgaagcgaca gactttaaag aagaagatat
     7801 cgaactcttc caagaaattg ctgaacgtgt cgcacaaacg aatagttacg atcttgcttt
     7861 cgaagcgctc gaaaaagaaa aagacttttt acaggtcatc gttaaggaaa acgatcaaca
     7921 actacctgct gaccaacaag tgccacaatt gattcaagag ttgcgccacg aaattaatca
     7981 aatgcgtgaa gaacgtcaaa tgttaggtca aatggtctca caagtgcatc aacaacaaga
     8041 agagcttaaa gcattacatc aacagttaca tacacagttg gagacgagca acaagtctct
     8101 tgaagcttta actactgcac aacaacaaca aacagagcaa ctgtcaaaaa cgcaagaaac
     8161 cattgaaacc caaacgaaag aacatcaaga gcttgcggaa acgattcacc gcaacgagaa
     8221 aaaaggtttc ttccaacgtt tatttggtgg ttaagcaaca ttgataacaa gctaaaaatg
     8281 taaaatttgg atttaacgtc cgtttgagta atactaatga atcattaata aaaaaaacat
     8341 aagctagggg tgctcgaggt gagctgagaa agatggtatc ttaactcttt gaacctgacg
     8401 tggttagaac caacgaaggg aagcgcaata tgatgacgaa atcgtctcaa gataaatggc
     8461 gagtagtcac attattctaa tcatatatgc tttcctcttg catcctttta tgcaggaggt
     8521 ctttttttat gaaacaaacg ctgattattg gtgcaggtgt tatgggatta tctattgcac
     8581 gccaactcaa ttccaaacat cgtcatatcc gtatcattga tcgctccacc ccacgaatga
     8641 acgcgtctta tgctgcgggt ggtatgttag gtgcacaaaa tgaatttttt gaagataccc
     8701 cactttatcg acttgcaatg aaaagtcgtg cgatgatgcc tgaattagcc caagccttgg
     8761 agcgcgaaac gggggttcat atcgaatatc aacagcacgg actcatcaaa gtcgcttctc
     8821 aacctcaaga tgtccaagcc gtccatcaac agtatgaatt tttacaccat cacgatcaca
     8881 ctgtcactca actgtcgacg gaacaattaa cgcaacggtt tccccatctc gatccatcac
     8941 aaagtgccgc gttcaaaatt caagacgacg gccaaattaa tgcaaacctt tatacacagg
     9001 cgcttattgc ttcggccatg caacgttccc atatcgaatt aatgacgcat acggaggttt
     9061 actcattaca gcgcctccat tactgttacc gtgttgagac gtcaaaaggc acatttgagg
     9121 ctgacgaact cattattgca gctggtgcat ggagtggcgc attacttcaa cagttaggtt
     9181 tcgaattacc gacacatcct gttaaaggtg acgttaaatt gattgcgtct gattacgccg
     9241 gtttaaaaga aacgattttt aatatgaacg gttgttacat cgtcccaaaa ttgccgaatc
     9301 gcttcttaat tggtgcaaca tccgattatg attgttggga cactgaaaac aatgacgaca
     9361 accttgcttg gcttgatcac gaaagtgtga acatgattcc cgcattacga tcacaccatg
     9421 tcattaaaac ttggacaggg attcgcccta ttacagaaga tgaaatccct attatgggtg
     9481 aaattgcacc tcaacttttc gtgacgacag ggcattatcg taacgggatt ttactgtcac
     9541 ccattgctgg tcaactgatg gcgcaactcg ttgatgaaga tagcgaagcc cgacatcagc
     9601 ttgctccatt tagacctaaa ataaaacaaa tataaaaaat atatcttgat tttatgtttc
     9661 cttactatta tcctattata gaagtcggaa ttaaaaagga agcgtattta tgtctatttt
     9721 tttagtgatt attaatttaa ttatttttct tctcgcctta ttaagcctgt gggtgatggc
     9781 gaaaaaacat gtcaaattcc ctaaacgcgt gttctttgca cttggtttag gtatcgtatt
     9841 aggcctccta ctccaccttg tttatggtgt tgaaggcaca gtcacatctc aaacaacgga
     9901 ttgggtcggc ttaattggga atgggtatat tgcattgcta caaatgattg tcattccact
     9961 tatttttgtt tctatcgtcg cggcatttac gaaaattgaa attggagaaa agtttgctaa
    10021 agtcggcagc ttcatcttca tgtttttgat tggtaccgta acaattgcag cgatgatcgg
    10081 tattatctat gcactcgcat tcaatttaga tgcttcaagt attgacttag ggcaggcaga
    10141 aaacgctcgt agcgccgaaa ttgctgataa agcaaaaggg ctgactgcga caacattacc
    10201 aacacaaatt ttagaattgt taccgtcaaa tccattttta gatttcactg gtgcacgtgc
    10261 aacttctact attgcagtcg tgatctttgc cgcatttgta ggctttgcat ttttacgtgt
    10321 cgcacgtaaa caacctgaaa atggtcaaac tttaaaacgc ggtattgatg ccatttacgc
    10381 acttgtcatg gctatcgtaa catttgtttt acgcctaacg ccttatggga ttttagcgat
    10441 tatgattaac acgattgcga cgagtgattt tgctgcgata tggactctcg gtaagttcgt
    10501 gattgcgtcc tatgcagcac tcattacaat gtacatcatt cacttaatca ttttggccgt
    10561 tattggtgtc aatccagtac agtatgtgaa gaaaacagcc gaagtgattt tattcgcatt
    10621 cacttcacgc tcaagtgccg gtacattgcc actcaacgta caagcgcaaa cgaatcgtct
    10681 aggtgtgcct caagctatcg caaacttctc aggctcattt ggactatcta tcggacaaaa
    10741 tggctgtgcg ggaatctacc ctgccatgct cgcgattatg gtcgcacctg tcgcaggtgt
    10801 tgaagtgaat ctacaattta tcgtgacagt catcatcgtt gtcgtgttaa gttcattcgg
    10861 tgtagcaggt gtagggggcg gtgcaacatt cgcttcaatc ctggtcttat ctgcattgaa
    10921 cttgccggtt ggccttgcgg gtgtcctcat ttcagtcgaa ccattgattg atatgggtcg
    10981 tacagcactt aacgtgaatg actctatctt agcgggtaca ggcactgcta aactgacaaa
    11041 acaactcgat gaagatgttt tcaattccaa tcatatggac gaattaacag cacaacatta
    11101 agtaacacaa tagttacaaa ttattagttc taggattgtc ttgatggatt cgctttccca
    11161 ggggacttgc ctcaactagc caacgcttaa tcatactgtg acataagtga agcgttggcg
    11221 gattttcggc tgcgcctgat cccttgggag tctcgtccat cacgacaatc ttactctaca
    11281 aagtcataga aagagggcaa ctttttacat taatgcgatg taacttgctt ttgatttcat
    11341 cgttaattac ttgctttatt gtaaattaga ttaaagtgta catttcgtac atactgaagc
    11401 ttaattttca tagagcgtct ataaaggcaa tcatatgtat ataaacataa tcaaagagac
    11461 agaaggcaag ttggctgtga tacgccattt ctttccagct aacattagtg cccctatctc
    11521 ttttaactta tgtttattgt acggtttcta attcgctact gtgacatttt agtgtatcaa
    11581 cttgaataat ctcgtcacat tgttgcgcga gcgttaaatc atgcgtcgcg ataatcagtg
    11641 tgcgcgtatc atcgaccata tcaaataaca gttccatcac tttttgtcca tttgcttcat
    11701 ctaaagaacc cgtgggctca tccgctaaaa tgagtcttgg ttgtttcaat atcagacgag
    11761 caagggcgac acgctgttgc tcacccccac ttaatgtcgc aactttacgc ttgccttcaa
    11821 tgtcaaggcc cactttttgc aaactatgtg tctttaattg tttctttcct gatctagaac
    11881 cctttttaaa agccagtgcc atatcgagat tttggttaat cgtcattgaa tcaacaagac
    11941 cataattttg aaatacatag ccgaggatat cgcgataaaa acgaaaatca gctttcaatc
    12001 ttttttgatc gagttgcact tcaccttttt ttaacgtttc aaaacctgca atggtattca
    12061 gcaaagtcga tttccccgag ccactatgac caataagcgc ataagacttc cccggctcga
    12121 attttagatt cacgttgtca aaaatcgtac gtttcccttt ttgtatcgtt atatttttca
    12181 attcaatcat tcttcaacac tcaccttttt aggccatttc gaaagatctt taatataatc
    12241 gatatgaaaa acgtaagtcc ctttgtgaag cactttcaca tgatcaaaat tggcgtcata
    12301 tcccccgaaa tttaaacgat atttaagggg ttcacctgat tcgtcatacg cttgaatatc
    12361 cacgtatgtt tgtgttccca atggcactac tgcataagag gtctcttttt taagaaaggg
    12421 attaaaataa tcgacatagg gaatacgtgc aaaagctaaa aataacccca ctgccactac
    12481 gataatagca aacgcagcca aaataaattt cttcactacc tacacctccc taattaatac
    12541 gttaaattgt ttttctaaat agtggatgta aacccattga acgaagaatt gaaacagtaa
    12601 aacaatggcg aataaccata tcacattact attttgtgtc ttttcaaata agaacgcgcc
    12661 aataagagca gtaaataaac catttaatat gatatagttg cgatagtttt gccaacgtct
    12721 gaagccaaac attttccgca tgagcagcca ttgacggtgc tgttcaaagt aatgtaacac
    12781 atctaataac gtgacgatga ataatactga tatcgcgagc ccactagaaa agctatatac
    12841 aatccattgt gtttgtgctt ctcgatattt tttaatcaca ttatctttat agttcgttac
    12901 accttgcacg tcatccttca aattaaaacg gtcgatatta cgaatgatat tttcataatt
    12961 tttaaagatg aaagtacctt gtgataaagt ggcgtaatag aaatcatctg ttaaatcttt
    13021 ggcgtttaac atcaaaattg cgggtgactt caaataagct gtagacaaac ctgtccgtac
    13081 atcaaaggcg taaatttggt atggattgtc cacctgtgtc actttaactt ttgtattagt
    13141 tgctgaattt ggaagttgaa agtctaccca ttcttgaaaa tcatcacgta tagctgcggc
    13201 ttttgttttt gcttgaggcg gtaaatacaa ctctacctgc ccctctcgat cttccaaacg
    13261 cggtaaatct tgtaattgtg acttaaaaaa gtctacaaag ttttgattaa caaacagcac
    13321 gttcccattc cctggtacaa aattcgtttc gcttggctca gctagcacat tttgtcgcat
    13381 cagtaatgct tgttcatgtt gctcgctata tacgatcatt tgatgaaagc gctttgcgaa
    13441 atttctttct tcatttatac tgcgccgtat tggtttcaat tcaatcatat agtaatcgtc
    13501 taatttgccc caccatgttt ctgtctcctg aattttttct aactttttta gctgattaaa
    13561 gttaggcaat ataagcagcg taagtaaaac gagcatactt aacttagata catgattgat
    13621 aaggtgtaat aatcgatacg gtttaaggcc tttaatcatt aatggtacat tcatacttac
    13681 aagcaaaata taagatagca aagaacttat gaataaaatc atccaaaacc atatgtccgc
    13741 taagataaga tggctaataa aatacccgag ttgtccatcc aagcctaacc atttcagcag
    13801 tccaattgag aagagactga cccccatcgc taaaaggaac catctcgcca ctattttctt
    13861 aatattcaga aaaaatatat tgtaaaaatg gtaaccgtgt aaacgcatcg tcgcatacgt
    13921 tttaaaattt ttacttcgat catacaaatg gtaaagtata tatatgatga gcaatgtgac
    13981 aaaggggagt aggacgcctc gattaatgag tacatcgata taaatcatcc atcgctttat
    14041 cggaacaaca gctactttaa gcccaacact ttctaaagct gctttgattt gatgaggatt
    14101 tgcgacacta tccaatatga aataatcccc ccgtacatcc cgcttcatca agtcatcaag
    14161 ggttaactgt tgatagctat atgacctatt cattggcgtg attgtgtgat gattcgcttt
    14221 tttattgaaa gtatagatgg ccttatcaac ttgccccttt ttatgatccg tgattacttt
    14281 aaaaatcgca atatctaagt ctttcgcaac cctttcaaaa cgatcaaaaa cttctgcttt
    14341 cgaatattga taatcccaac cttctacttg aatggccact tgactcccgg taagtatttc
    14401 actatcttct tcatacaaca ataccattaa aaatagactt attagcgtga gtgtaaacac
    14461 atctaataag tgtttcaacc atttcatgac tcatccccta aaactctgat aattataata
    14521 cactataata tgcttcatta cgccaccacc atctcttctc cgctgacgcc tgagcttctt
    14581 ctccaggttt agtagctcca ctatctgatc tatattttcc tattgctgtg gaagtgtgat
    14641 actttccatt atgactataa tatgaccata cgtatttact tcccacgcca tggttccata
    14701 ttccaccttc tgcatgaaca ctttctgcac tcactaaact tgttgcacca ataaaaacga
    14761 ctaataatcc tgctgtaagt gtacttaaaa atttcttttt cataactgct tcctcctttt
    14821 tgatagaatt acacctatat tatattttta aacaactata tttgcaacat cattatatta
    14881 cttttaataa ctagttttgt atat
//
LOCUS       DANHOL010000058        13996 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.058, whole genome shotgun sequence.
ACCESSION   DANHOL010000058 DANHOL010000000
VERSION     DANHOL010000058.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 13996)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13996)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13996
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.058"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            46..1551
                     /locus_tag="PTC08_001256"
     CDS             46..1551
                     /locus_tag="PTC08_001256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide MFS transporter"
                     /protein_id="HDK5682769.1"
                     /translation="MSSHYTKEEILNSTPRTGFFGHPKGLSTLVFTEFWERFSYYGMK
                     GILAFYIYYSVAKGGFGLDQGVALQIVSIYGALVYMSGVIGGWIADRITGTRHALFYG
                     AVLIMIGHILMSLPNSLVLLLIALLFLIMGTGLLKPNISSTVGLLYDKNDARMDSAFT
                     IFYMSINLGALLSPLIIGWVQVNVGFHVGFAIAAVGMFFGLLAYIFTNKKSLGLAGVE
                     VPDPLTPTERSKLIKIIGSLTIILVIIGIALYTTGYLTIELFSNIITILGVFLPVFLF
                     TKIILSNKTAKHERKRVFAYIPLFIASVAFWMIQEQGSTVLAQFSDTKTQLELSKVTG
                     GLIDFHIPPAWFQSLNPFFIIILAPLFSILWMKLGRYNPPTVIKFALGVILAGLSYLI
                     MIIPDSNSLINPFWLVASFLLVTFGELCLSPIGLSTTTKLAPDAFAGQMMSIWFLSNA
                     MAQGLNAQMVKIYVHMSTNEYFLYSGLFAVAIGIILILITPLIKNLMQGVK"
     gene            1903..3405
                     /locus_tag="PTC08_001257"
     CDS             1903..3405
                     /locus_tag="PTC08_001257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide MFS transporter"
                     /protein_id="HDK5682770.1"
                     /translation="MSELSHEKAVQEIPQKGFFGHPRGLGVLYTVEFWERFSYYGMRA
                     LLIYYIYYNVSQGGLGLEKTFAQSLIAVYGSLIFMTSILGGWVADRILGTRRSMFYGA
                     VLIIIGHICLSLPFGLTGLLSSMFFIIVGSGLMKPNISNIVGRLYPKDDSRVDSGFVI
                     FYMAVNMGAFVSPLVLDHFRNVGNFHGGFLIAAIGMGLSLLFYLLFHKRNLGRIGVAP
                     PNPLSPAEKKKYGMIFGLITAAIVLVVAIASMTGTLSFNLVSLIVLVLGFALPFVYFT
                     IMIVSKDTTDVERSRVIAFIPLFIVGVIFWSIQEQGANVLAVYADEKADLAFNLFGWE
                     SVFPVTWFQSINPFFIVVFAPVISWLWRRLGRFEPSLPIKFAIGLFLAGSSFILMMGV
                     IYAYNDANIWFVWIILSYIICVIGELCISPTGNSSAVKLAPENFNSQMMSLWLLTNAT
                     AQAINAQLVKLQPIIGNQNYFGLIGGIAIVVALLAVIGSPFILRAMKGIR"
     gene            3540..4472
                     /locus_tag="PTC08_001258"
     CDS             3540..4472
                     /locus_tag="PTC08_001258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase family lipid kinase"
                     /protein_id="HDK5682771.1"
                     /translation="MAPQYEHGVLFYHQHSGLNKIHEGLGEVTVALTQLCKRFTIQLS
                     ENEGDIEKYCQRIQDQDNREGIDVLFILGGDGTVNELINGVLKYNLNLPVGIIPGGTF
                     NDFAKTLNLSTKAGPASQDLLLASPQKYDVMKVEDQYVLNFAGIGLMVQNAENVQGQS
                     KDLFGKLSYIMSTLKTLSNPKPFNYTLDIDGRTYTGETSMLLFANGRFIGGGKIPLME
                     MSPSDGELNTFIFNNYSMSILKDIFSLRDSMTWSEISDNIDHIPSRHIHVKTEPPMRV
                     DIDGEIALDTPVDIEIIPQAIELLTVEPGQAKDN"
     gene            complement(4558..5094)
                     /locus_tag="PTC08_001259"
     CDS             complement(4558..5094)
                     /locus_tag="PTC08_001259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'(3')-deoxyribonucleotidase"
                     /protein_id="HDK5682772.1"
                     /translation="MRTSIGIDMDEVLADTMGAILDELNRRTQLGVTIDQIAGKRIYE
                     IMPEHTKEIRNILASDGFFGRLNVMKDAQAVVKKLAEHYDIYIVTAAMDVPTSFHDKY
                     EWLLEHFPFLDSQQFVFCGRKDIVATDYLIDDNPRQLGGHTGKPLMFSAPHNEGNTDF
                     ERVNNWKEVEEYFFGKEA"
     gene            complement(5195..6244)
                     /gene="hisC"
                     /locus_tag="PTC08_001260"
     CDS             complement(5195..6244)
                     /gene="hisC"
                     /locus_tag="PTC08_001260"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011276431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HDK5682773.1"
                     /translation="MKSQISKLRAYQPGLSPEKLKEKYGIEGELHKHASNENLFGPSP
                     KAKQAIKDHVDDLFLYPEPNAPLLQEAIANHYGVDKSQVLFGAGLDEMIVIISRTLVR
                     AGDNIVTSAGTFGQYLHNAVVEDAETIQVPLVEGSFDLDGIAAAVNDKTAAIWICNPN
                     NPTGTYHTHDDIVAFLEKVPSHIPVFMDEAYAEYVSAEDYPKTLELMKQYDNVALMRT
                     FSKAYGLAGLRIGYLISTPELAAQLNVIRPPFNTTRLSEQAALKALEDQEYLQQVVET
                     NRVEREKFFELETALKIYPSQTNFVFVETDRAEELDETLLRHGIIARLFPNGVRISLG
                     FPEQNEVIRHVLKSF"
     gene            complement(6569..8086)
                     /locus_tag="PTC08_001261"
     CDS             complement(6569..8086)
                     /locus_tag="PTC08_001261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease/substrate-binding
                     protein"
                     /protein_id="HDK5682774.1"
                     /translation="MNIFLETLNSRKGELFAALLEHIQLSFVALLIAVLIGVPLGILL
                     TKTKKLSEVVINIAAVLQTIPSLALLGLMIPLFGIGTVPAVIALVVYALLPILRNTYT
                     GITGVDYSLIEAAKGIGMKPIRRLTKVELPIAMPVIMAGIRTAMVLIIGTATLAALIG
                     AGGLGDLILLGIDRNHTSLILIGAIPAAILAILFDVILRMLSHTSYRKMLATLGVILL
                     FMLAVTIAPIFSNQNERITIAGKLGTEPSIITNMYKILIEDETDYTVSVKDGMGKTTF
                     LFNALKSGDIDGYLEFTGTVLGELTKESPKSKDEKEVYEQANASLENKFDMTLLRPMQ
                     YNNTYALAVKRDFAEEHNIKTINDLKKVESEIKPGFTLEFNDREDGYHAIQKVYHLNF
                     QNVKKMEPKLRYQAIESGDINLIDAYSTDAELKQYDMVVLDDDRKVFPPYQGAPLFKK
                     SFIEAHPDIEKALNQLEGKISDEEMQEMNYRVAEKDEDPYDVAKAYLKKQGLIDK"
     gene            complement(8083..9042)
                     /locus_tag="PTC08_001262"
     CDS             complement(8083..9042)
                     /locus_tag="PTC08_001262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDK5682775.1"
                     /translation="MIKFSNVSKYYDDRVVVNQVDIEINEGEFFVLIGPSGSGKTTTM
                     KMINRLIPLSEGYIYFKDRPISDYSVYEMRWDMGYVLQQIALFPHMTIRDNIAQVPLM
                     KGWTKEKIDARVDELLSMVGLDPEQFRDRKPEELSGGQRQRVGVVRALAVDPPVILMD
                     EPFSALDPITREKLQDDLLKLQDQIKKTIVFVTHDIEEAFKLGDRICLLNHGHIEQIG
                     TPNDFIKKPKNDFVCQFLGDLTSVVLNHFSLGKVVELAGEKATEAQLRQYPVVHADQT
                     VSDVYDELVQYEAVIVPVEGEQWSLSRQDIFSFLSKNQAGVSR"
     gene            complement(9281..11062)
                     /gene="recQ"
                     /locus_tag="PTC08_001263"
     CDS             complement(9281..11062)
                     /gene="recQ"
                     /locus_tag="PTC08_001263"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016424488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase RecQ"
                     /protein_id="HDK5682776.1"
                     /translation="MEQTLSHYFGYKSFRPGQKEIIERVLNHHHTLGVLPTGGGKSLC
                     YQVPGLMFKGTTIVISPLISLMKDQVDQLTAMGISAAYLNSSLSTQAQKEIETQLVNG
                     ELKFLYIAPERFEQTYFEMLLRRVDISLVAFDEAHCISKWGHDFRPSYQAVIQRVLTM
                     PQQFSIVALTATATTEVQQDIMERLMISRQHLVKTSIRRRNLKFQVNGTYQRQKFVLD
                     YIQKHSQKAGIVYCSTRKQVEALYEALEDADIPVSYYHAGMTAKQRDEAQNDFLYDRT
                     RVVVATNAFGMGIDKSNVRYVIHYNVPGDLESYYQEAGRAGRDGLDSDCILLYSDRDI
                     ALHQYFIGASKADDDYKERMGEKLTKMIQYTKTTKCLEATLVHYFEPNEKLEECHQCS
                     NCIDKNKTYNMTKEAKMIISGVARLRQQEGYQTVIQVLRGEVSDYIRHQGYENLSTYG
                     LMKDYTTGELHHLIDELRFKGFLNEHDEILMCDASVEKLLSEDTQVFTRPFKRKSKET
                     VHINTVEGVDRTLFEKLVEVRREMSERLNMPPTNIFTDYTLEAFAKRKPVTKQEMIQI
                     DGVGSYKLKHYCPEFLEAIQEYKMHRS"
     gene            complement(11072..12949)
                     /locus_tag="PTC08_001264"
     CDS             complement(11072..12949)
                     /locus_tag="PTC08_001264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HDK5682777.1"
                     /translation="MEAYKIERLNKSYADKVIFDDLQLSISNQERIGLVGINGTGKSS
                     LLKVIAGMDEDFDAVQSHPKQYRIRYAAQNHNLEPTLTVYEAVYSADSKELQVIKRYE
                     EATAQYAEQQTDKAFDAMMAAQADMDAYSAWDYSAEIKTILSKLGIHDTTRRMSELSG
                     GQQKRVVLARTLIEKPDLLLLDEPTNHLDFESIHWLIQFVKSYPKTVVFVTHDRYFLN
                     EVATRIVELRNGKLDTYPGNYEAYIAMRAEREEIEVRQQTKQRALFKQELAWMRAGVK
                     ARTTKQQARQDRFHDLKEQVQSHQVQGKGSLNLAYSRLGKQVFELENVTKRIDGRTLF
                     ENVSTLIQKGVQIGIVGPNGVGKTTMLNILAGEDQHFEGVLKIGQTVKVAYFKQTDER
                     LNRDVRVIDFLREESELARQKDGTTVSITQLLERFLFPSVTHGKKVYKLSGGEQKRLY
                     LLKLLVHQPNVLLLDEPTNDLDTETLTILEDYIQTFGGTVITVSHDRYFLDKVVDCYW
                     YIHDGQIDMILGQFEDYLAYQKQLEQAATQVASVKQQPTLQPKKKKGLSYNEKREYDM
                     LLVRIEETESRLAEIDAEMIEANADYAKIKALNEEKETLEAQYDTDMTRWSELEEILE
                     Q"
     gene            13061..13876
                     /locus_tag="PTC08_001265"
     CDS             13061..13876
                     /locus_tag="PTC08_001265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ZIP family metal transporter"
                     /protein_id="HDK5682778.1"
                     /translation="MLDYISNMPPFLQALLAGVITWLLTALGAATVFVFKSVNEKVLN
                     SMQGFAAGIMIAASFWSLLQPAIESSSGSTVPWLPAAIGFLLGGVFIRSLDYVIPHMH
                     RNATDESQHQEGVETSLNKNTLLLLAITLHNIPEGLAIGVAFGGIATGNEHATLLGAL
                     GLAIGIGIQNIPEGAALSLPIHASGQSKWKAFNYGQASALVEPVFATVGAAAVLVVTP
                     ILPYALAFAAGAMIFVVVEELIPDSQAGKNTDLATLSLMVGFTIMMILDVALG"
BASE COUNT         3993 a         2891 c         2502 g         4610 t
ORIGIN      
        1 agttatagaa taagtttaac ttgacttaca tagggggtat tatcaatgag ttcacattat
       61 acaaaggaag aaatcctaaa tagtacgcca cgtacgggat tcttcgggca tcctaaagga
      121 ctcagtacgc tagtgttcac agaattttgg gagcgtttta gctattacgg gatgaaagga
      181 atactagctt tctatatcta ttattcagtg gctaaaggcg ggtttggttt agaccaaggt
      241 gtcgcacttc aaatcgtttc aatttatggc gctttagttt atatgagtgg ggtgatcgga
      301 ggttggattg cagaccgtat cacaggcaca cgtcacgcat tgttttatgg tgctgtgctg
      361 atcatgattg gccacatttt aatgtcactc ccaaacagcc ttgtcttatt acttatcgca
      421 ttactctttt taattatggg gacaggtttg ttgaaaccaa acatctcctc aacggttgga
      481 ttgttatacg ataagaacga cgcacgcatg gattcggcat ttacgatctt ttatatgagt
      541 attaatttag gagcattact ctcaccactc attatcggat gggtacaagt caatgtcggt
      601 ttccatgtcg gctttgcgat tgcagctgta gggatgtttt tcggtttatt ggcatatata
      661 ttcacaaata aaaaatcact cggtcttgca ggtgttgaag tgccagaccc attgactcca
      721 acagaacgct caaaattaat taaaatcatc ggaagtctga cgatcatact agtgattatt
      781 gggattgcat tgtatacaac aggctactta actattgaac tattttctaa tatcatcacg
      841 atattaggtg tattcttgcc tgttttcttg tttacaaaaa ttattctaag taacaagact
      901 gcaaaacatg aacgtaaacg tgtttttgca tacattccgt tgtttattgc gtctgttgcc
      961 ttctggatga ttcaagagca agggtcaaca gttttagcac agttttctga cacaaaaaca
     1021 caacttgaat tatctaaagt tacaggagga ttgattgatt ttcatatccc accagcatgg
     1081 tttcaatctt taaatccatt tttcattatt attttggcac ctttattctc aattttatgg
     1141 atgaaactcg gtcgttataa tccaccgact gtcattaaat ttgcgctcgg tgttatttta
     1201 gctggtcttt catatttaat tatgattatt ccagacagta acagtttgat caatccgttc
     1261 tggttagtcg cgagcttctt actcgtaacg tttggtgaac tttgtttatc tcctattggc
     1321 ttatcaacaa caacaaaact tgcacctgat gcgtttgcag gtcaaatgat gagtatatgg
     1381 tttttatcga atgctatggc gcaaggttta aacgcacaaa tggtgaagat ttatgtccat
     1441 atgagtacaa acgagtactt cctttattca ggactcttcg cggtggctat cggtataatt
     1501 ttaattttaa ttacaccatt gattaaaaac ttaatgcaag gcgtaaaata aattaaatac
     1561 tttttcatac atatgagagg tttgggcatg aatgtaccgg acctctcata ttattttcaa
     1621 aaactttcta gtgacacttt atctcctcat tcgttacttc catcgtcaaa catgtagggt
     1681 cgatttaaac atacatcctc tccctcttta tttaaacgtt acttccatct atcggcagca
     1741 agtaaccact atacaaatag tgcataattc aaccatttat cactttattt tttatctgaa
     1801 tttttaaaat tttattattt ttaaaaaact aattgctatt tattttcatc aggcgtaaac
     1861 tttctattat atgttttgtt cagataggaa ggattgattg aaatgtcaga attatcacac
     1921 gaaaaagctg tacaagagat tcctcaaaaa ggattcttcg gccatcctcg tggtctaggt
     1981 gtattatata ccgtagaatt ctgggagaga tttagttatt acggtatgcg tgccctattg
     2041 atttactaca tttactacaa tgtcagtcaa ggtggcttag ggctcgagaa aacattcgct
     2101 caatcgttga tagctgtgta tggctcgtta atcttcatga catctatttt agggggctgg
     2161 gtagctgacc gaatactggg gacaagacgc tccatgtttt atggtgctgt gttaattatt
     2221 atcggtcaca tttgtttaag cttaccgttt ggtttaacag gactactgtc atcaatgttc
     2281 tttattattg tagggtcagg tctgatgaaa cctaacattt caaatattgt ggggcgtctc
     2341 tatcctaaag acgatagccg tgtagattca ggattcgtta ttttctatat ggccgtaaat
     2401 atgggggcgt ttgtttcacc acttgtgtta gaccacttta gaaatgtcgg taacttccac
     2461 ggtggcttct taattgctgc gattggtatg gggctgtcac tcctttttta ccttttattt
     2521 cataagcgta atctaggacg tattggcgtc gcaccaccaa atccgttaag ccctgcagaa
     2581 aagaaaaagt atgggatgat tttcggtctg attaccgctg cgattgtctt agttgttgcg
     2641 atcgcatcta tgactggaac actttctttt aatttagtga gtttaatcgt attagtttta
     2701 ggatttgcat taccatttgt ttattttacg attatgattg taagtaaaga tacaacagat
     2761 gttgaacgtt cacgtgttat tgcgtttatt cctttattta ttgtcggtgt tattttctgg
     2821 tcgattcaag aacaaggggc taacgtcctt gccgtatacg cggatgaaaa ggcagacctt
     2881 gctttcaact tattcggctg ggaaagtgtt ttccctgtga catggttcca atcgattaac
     2941 ccatttttca ttgtcgtttt cgcaccagtg atttcttggc tatggagaag attaggacgt
     3001 tttgagccaa gtttaccaat taagtttgca atcggtttat ttctagcagg tagctcgttc
     3061 atcctgatga tgggtgtgat ttatgcttac aatgacgcca acatttggtt tgtatggatt
     3121 atcttgtcct atattatttg tgtgattggt gagctttgta tttcaccaac aggaaatagt
     3181 tcagctgtta aacttgcacc tgaaaacttc aactctcaaa tgatgagttt atggttatta
     3241 acgaatgcaa cagcacaagc gattaatgca caacttgtga aacttcaacc tattattggg
     3301 aatcaaaact atttcggtct tattgggggc atcgctatcg ttgtcgcgct tttagccgtc
     3361 atcggttcac catttatttt aagagctatg aaaggtattc gttaacatca caataaggtg
     3421 agtatacgtt tgggacaccc ctcgtgtact cacccttttt tactttgaag ttatcatgat
     3481 taacatcaac acaattgcgg tatacaatga agtgtacgtg aattgaaagg agcaaactta
     3541 tggcaccaca atacgaacac ggcgttcttt tttatcacca acattcagga ctcaacaaaa
     3601 tacatgaagg cttgggtgaa gtgactgtcg cgctgaccca actctgcaaa agatttacca
     3661 ttcaattaag tgaaaatgaa ggtgacatcg aaaaatattg tcaacgtata caagaccaag
     3721 acaatcgcga aggcatcgat gtcctcttca ttttaggtgg cgatggaaca gtcaatgaat
     3781 taattaatgg tgtcttaaaa tataacttaa acctcccagt cggtattatt ccaggtggca
     3841 cgtttaatga ctttgcgaaa acattgaatt tatctactaa agcaggccca gcgagtcaag
     3901 atttgttact tgcatcacct caaaaatacg atgtgatgaa agttgaagat caatatgtat
     3961 taaactttgc gggcatcggt ttgatggtac aaaatgctga aaatgtacaa ggtcaatcta
     4021 aagacttgtt cggcaaacta agttatatta tgtcaacact taaaacactt tctaacccaa
     4081 agcctttcaa ctatacatta gacattgatg gtcgaacgta tacaggtgaa acgtccatgt
     4141 tgttatttgc gaatggtcgt tttatcggcg gcggcaaaat tccgctcatg gaaatgtcgc
     4201 cctctgacgg tgagcttaat acgtttattt ttaataatta cagtatgagt attcttaaag
     4261 atatttttag cttacgtgat agtatgacgt ggagtgaaat tagcgacaat atcgatcata
     4321 ttccaagtcg tcacattcat gtgaaaactg agccgccaat gcgcgtcgat atcgatggtg
     4381 aaattgcttt agatacaccg gttgatattg aaatcattcc gcaagcgatt gaattattga
     4441 cggtagaacc aggtcaagca aaagataact agcgaaaagc aaaaaaagca gtgacgcact
     4501 acaatggcgt cactgctttt tgctgctgtg gattaaaaaa tgctaaccta ttaaacgcta
     4561 tgcttcctta ccgaaaaagt attcttctac ttctttccag ttattcacac gttcaaaatc
     4621 ggtattcccc tcattatgtg gcgctgaaaa cattaacggc ttccctgtat gtccccctag
     4681 ttgacgcgga ttgtcatcaa ttaaataatc cgtcgcgaca atgtctttac ggccacagaa
     4741 cacaaattgt tgtgaatcta aaaatgggaa atgttccaat aaccattcgt atttgtcatg
     4801 gaaagatgtc ggcacatcca ttgcagctgt gacaatataa atgtcatagt gctcggctaa
     4861 ttttttaacg accgcttgcg catctttcat cacatttaaa cggccaaaaa agccgtctga
     4921 tgccaaaata ttacggattt ctttcgtatg ttctggcatg atttcgtaaa tacgtttccc
     4981 agcgatttga tcgattgtca cacctaattg tgtacggcga ttcaactcat ctaaaatcgc
     5041 ccccatcgta tctgccagta cttcatccat atcgatccct attgaagttc tcatgttatc
     5101 gctccttgta tacattcatc tcaccgcttt atcataacat actttgtctc agcgtttgat
     5161 gattcccaca caaactcgaa tgtcattgtt taggttaaaa tgatttcaac acgtggcgaa
     5221 tcacttcatt ttgttctgga aaacctaatg aaatacggac accattaggg aaaagacgcg
     5281 caataatgcc gtggcgtaac aaggtctcat ccaattcttc tgcacgatct gtttctacaa
     5341 agacaaagtt tgtttgagac ggataaattt tcaaagctgt ttcaagctca aaaaactttt
     5401 cacgttccac gcggttcgtc tccactactt gttgtagata ttcctggtct tctaacgctt
     5461 tcaatgcggc ttgttcagat aaacgtgtcg tattaaatgg cggacgaatg acattgagtt
     5521 gtgcagctaa ttctggcgta gaaatgagat aaccgatacg taaacctgct aaaccatacg
     5581 ctttagagaa cgtacgcatt aacgcgacat tatcatattg cttcattaat tctaacgttt
     5641 ttggataatc ttctgcagag acatattccg cataagcctc atccataaat actggaatgt
     5701 gtgaaggtac cttttctaaa aatgctacaa tatcgtcatg tgtgtgatat gttccagttg
     5761 gattgttcgg attacaaatc catatcgctg ctgttttatc atttactgct gctgcgatac
     5821 cgtccaaatc aaatgaccct tccaccaatg ggacttgaat ggtctccgca tcttctacga
     5881 ccgcattgtg aagatattgg ccgaacgtcc ccgcactcgt cacaatattg tcccctgcac
     5941 ggactaacgt tctagaaata atcacaatca tttcatcaag gccggcacca aaaagaactt
     6001 gtgatttgtc tacaccataa tgatttgcaa tggcttcttg tagcaatggt gcattcggtt
     6061 cagggtataa aaagaggtca tccacatgat ctttaatcgc ttgtttcgct ttaggagatg
     6121 gaccaaataa gttttcatta gaagcatgtt tgtgaagctc accctcaatc ccatactttt
     6181 cttttaattt ctccggtgac aatccaggtt gatacgcacg taatttagaa atttgtgatt
     6241 tcatttctaa acctcctata aatcagaatt tttaaaatat agttactagt ataaccatta
     6301 acgctttaaa atgctagagt atccgtctat ttattcgtag tctatcaaag gttcaaataa
     6361 aaattttgat cacgcacaat taaaaagacg atgtcgtacg tgtatcataa tgacaaccgg
     6421 ataataccat tgatatagaa caactggacc atgacgcctc tccaaaagtt ttgaaagaca
     6481 acaacagtcc agtcgttttt atactatttc taataaagtc aacaaattgt tcggcaacct
     6541 atcaacaaat gagacgcaaa caatagcact atttgtcaat caagccttgt ttcttgagat
     6601 acgctttcgc gacatcataa ggatcttcat ctttttcagc aacacgataa ttcatttctt
     6661 gcatctcttc atcagatatt ttaccttcaa gttggtttaa agctttttca atatctgggt
     6721 gcgcttcaat aaatgatttt ttaaacagtg gtgcaccttg atacggtggg aatactttac
     6781 ggtcatcatc aagcacgacc atatcatatt gttttaattc tgcatctgtc gaatatgcat
     6841 caattaaatt aatatcacca ctttcaatag cttgataacg caatttaggc tccatctttt
     6901 tcacattttg gaagtttaag tgatacactt tttgaatcgc atgataacca tcttcacggt
     6961 cattaaattc aagtgtgaaa cctggcttaa tctcgctttc gacttttttc aaatcattaa
     7021 tcgttttaat gttgtgttct tcggcaaagt cgcgtttgac tgctaatgcg tacgtattgt
     7081 tgtattgcat tggtctcaac aacgtcatat caaatttgtt ttccaaactt gcatttgctt
     7141 gttcatatac ttctttttcg tctttagatt tcggtgattc tttagtcaac tcacctaata
     7201 cggtacctgt aaactccaaa taaccatcaa tatcacctga ttttaatgca ttgaataaaa
     7261 atgttgtttt acccataccg tctttcactg acacagtata atctgtttca tcttcaatta
     7321 aaatcttgta catatttgtg atgattgacg gttctgtacc aagcttccca gcaatcgtaa
     7381 tacgttcatt ttgattagag aagatgggtg cgatagtaac tgccaacatg aacagtaata
     7441 tcacaccaag tgtcgctaac attttacggt aagacgtatg gcttaacatt cttaaaatca
     7501 catcaaacaa aattgctagt atcgctgcag gaatcgctcc aattaaaatc aatgaagtgt
     7561 gattacgatc aattcctaat aagataaggt cacctaatcc tcccgcacca attaatgccg
     7621 ctagtgtagc tgtaccaata atcaagacca ttgctgtacg aataccggcc ataatgactg
     7681 gcatggctat cggtaactca actttagtca aacgacgaat aggtttcatg ccaatgcctt
     7741 ttgctgcttc tattaacgaa taatcaacac ctgtaattcc cgtatacgta ttacgtagaa
     7801 taggtaataa tgcgtaaaca acaagcgcaa tcaccgctgg taccgttcca ataccgaaca
     7861 atggaatcat aaggccaagt aaagcaagcg acggaatggt ttgtaagact gctgcaatgt
     7921 taatcactac ttcagataat tttttagttt ttgttagtaa gataccaagc ggtacaccga
     7981 ttaacacagc aatcagtaat gcgacaaacg aaagttgaat atgttcgagt aaggcagcaa
     8041 ataactcacc ttttcgacta ttcaatgttt ctaaaaatat attcatctac tgacacctgc
     8101 ctgatttttt gataagaagc taaagatgtc ttggcgcgat aaagaccact gctcaccttc
     8161 aactggcaca atgaccgctt catactgtac cagttcatca taaacatcac tcactgtttg
     8221 atctgcatgg acgactggat attgacgcaa ttgtgcctct gtcgcttttt cgcctgcaag
     8281 ttctacaact ttaccgagtg agaaatgatt cagtacaaca ctcgtcaagt cacctagaaa
     8341 ttggcaaacg aaatcatttt ttggtttttt gataaaatcg ttaggtgtgc cgatttgttc
     8401 tatgtgacca tgattcagta agcaaatgcg atctcctaat ttaaaagctt cttctatatc
     8461 atgtgtcacg aatacaattg ttttcttaat ttgatcttgt aactttaata agtcatcttg
     8521 tagtttctct cgggtaattg gatctaacgc actaaaaggt tcgtccatta aaattaccgg
     8581 tggatctact gcgagcgcac ggacaactcc gacacgttgt cgttgcccac ctgagagttc
     8641 ttcaggtttt cggtctctaa actgttctgg atcgagccca accatcgata atagttcatc
     8701 gacgcgtgca tcaatctttt cttttgtcca gcctttcatc agcggtactt gtgcgatgtt
     8761 atcacggata gtcatatgcg gaaataaggc gatttgttgt aacacatacc ccatatccca
     8821 gcgcatttcg tatacagaat aatcactaat tggacggtct ttaaaataaa tgtagccttc
     8881 agataatggt attaatcggt taatcatttt cattgtggtt gttttacctg agccagatgg
     8941 accaatcaaa acgaaaaatt caccttcgtt aatctcaata tccacttgat tgacaacgac
     9001 tcggtcatca tagtacttag aaacattgct aaattttatc atacaatccc tctatctttc
     9061 tgttttcaat taattttact gatatacaat tcatttcccc aaatggctag acacaatatt
     9121 cattaaaaca taattcattg taaaaataac acaatttgca tctaaaaaat ttaaatcatc
     9181 tactatcgac acgtctcact tttccattct ttaccattca ataagaaatc gtttatttgt
     9241 aaaaaaggag ccaggaattc ccccagctcc atctgatgtt ttacgaacga tgcattttat
     9301 attcttgaat cgcttctaaa aattcaggac aatagtgctt cagcttataa ctaccaacac
     9361 catcaatctg aatcatttct tgctttgtga caggctttct tttcgcaaaa gcttctaacg
     9421 tatagtctgt aaaaatattc gtcggtggca tgtttaatcg ttcgctcatt tcacgtctga
     9481 cttcgacaag cttttcaaat aacgtgcggt cgaccccttc tacagtgtta atatgcactg
     9541 tttctttcga cttacgcttg aacggccttg taaacacttg tgtatcctca ctcaataact
     9601 tttctactga ggcatcacac atgagtattt cgtcatgttc gttgagaaag cctttaaagc
     9661 ggagttcatc gattaaatga tgtaactcgc cagtcgtata gtctttcatc aaaccatacg
     9721 tcgaaagatt ttcatagcct tgatgacgaa tgtagtccga aacctcgcca cgcaaaactt
     9781 gaatgaccgt ttgatatcct tcttgttgac gtaaacgtgc gacaccgcta atgatcattt
     9841 tcgcttcttt cgtcatattg tacgttttat ttttatcaat acaattacta cattggtgac
     9901 attcttcaag tttttcattc ggctcaaaat aatggactaa tgttgcttct agacatttcg
     9961 tcgttttcgt atattgaatc attttcgtca atttttcgcc catacgttcc ttgtaatcat
    10021 cgtccgcttt cgaggcaccg ataaaatact gatgtaaagc aatatctcga tcactgtaca
    10081 ataaaataca atcactatct aatccgtctc gacctgcacg tcctgcttct tgataatacg
    10141 attccaaatc acccggcaca ttgtaatgaa tgacataacg gacattcgat ttatcaattc
    10201 ccataccgaa tgcgttggtc gcaacgacta cacgagtacg gtcatataaa aagtcattct
    10261 gggcttcatc tctttgtttc gctgtcattc ctgcatgata gtaggataca gggatatctg
    10321 cgtcttctaa agcttcatac aaggcttcta cttgtttacg cgttgaacaa taaacaatcc
    10381 ccgctttctg actatgtttt tgaatataat ccaatacaaa cttttgacgt tgatacgtcc
    10441 cattcacctg gaacttcaaa ttacgtcgac gaatactagt tttgactaag tgttgtcgcg
    10501 aaatcattaa ccgttccata atatcttgtt gcacttcagt cgtcgctgtt gcagtcaatg
    10561 cgacaatcga aaactgttgc ggcatagtta atacgcgttg tatgactgct tgataactcg
    10621 gccgaaaatc atgtccccat tttgaaatac agtgtgcttc gtcaaatgcg acgagtgaaa
    10681 tatcgacacg tcgcaacaac atttcaaaat aagtttgctc aaaacgttcc ggtgcgatgt
    10741 acaaaaattt caactcacca ttgaccaatt gcgtttctat ctctttttgt gcttgcgtac
    10801 ttaaactact attcaaataa gccgcagata ttcccattgc ggtcaattgg tccacttggt
    10861 ctttcattaa cgaaattaaa ggactaatta caatggtcgt tcctttaaac atcaatcccg
    10921 gtacttgata acataacgat ttacccccac ctgtgggtaa cacccctaac gtatgatgat
    10981 gattcaatac gcgttcaata atttcttttt gaccaggacg aaaagatttg tatccaaaat
    11041 aatgcgacaa tgtttgctcc atgctatccc tctattgttc taatatttct tctagttcac
    11101 tccaccgcgt catgtcggta tcatattgag cttcgagcgt ttctttttct tcatttaatg
    11161 ctttgatttt ggcataatct gcgttcgctt cgatcatttc ggcgtcaatt tcagccagac
    11221 gcgactctgt ttcctcgatg cgcactaata acatgtcata ttctcgtttt tcgttgtatg
    11281 ataatccttt tttctttttt ggttgtaatg tcggttgttg tttcacggac gctacttgag
    11341 ttgctgcttg ttccaattgt ttttggtatg ctaaataatc ttcaaactgc cctaaaatca
    11401 tgtcaatttg accgtcgtga atataccaat aacaatccac gactttatct aaaaagtaac
    11461 ggtcatggct cacagtaatg acggtaccac caaatgtttg aatgtagtct tctaaaatcg
    11521 ttaacgtttc tgtatccaaa tcatttgttg gttcgtctaa caacaacacg ttcggctgat
    11581 gcactaacaa cttcaataaa tacaaacgct tttgttcgcc acccgagagt ttatacactt
    11641 tcttaccatg cgtcacactg gggaataaaa agcgttccaa caattgcgta atcgaaacgg
    11701 tcgtcccatc tttttgacgc gccaactcac tttcttcacg caagaaatca atgacacgga
    11761 catcacgatt caatcgttca tctgtttgtt taaaatatgc cacttttacc gtttgaccta
    11821 tctttaatac accttcaaaa tgctgatctt cacctgctaa aatgttcagc atcgtcgttt
    11881 tgccgacacc gtttgggccc acaataccga tttgaacacc tttttgaatc aatgtcgaca
    11941 cgttttcaaa taatgtacgg ccatcaatac gtttcgtcac attttcaagt tcaaagactt
    12001 gtttgcctaa gcgcgaataa gccagattca atgacccctt cccttgcact tgatgcgatt
    12061 gtacttgttc tttcaagtca tgaaaacgat cttgccttgc ttgttgcttc gtagttcgcg
    12121 ctttgacacc ggcacgcatc cacgctaact cttgtttaaa aagtgcacgt tgtttcgttt
    12181 gttgacgcac ttcgatttct tcccgctctg ctcgcattgc aatatacgct tcatagttac
    12241 ctggatatgt atctagcttg ccatttcgca attctacaat acgcgtcgcc acttcattta
    12301 aaaagtaacg gtcatgcgtg acaaaaacga ctgttttcgg ataagacttt acaaattgaa
    12361 ttaaccaatg aatcgattcg aaatctaaat ggttcgtcgg ttcgtctaat aataataaat
    12421 ctggtttttc aatcaacgta cgcgctaaca ctacacgctt ttgttggcca cctgagagtt
    12481 cactcattcg gcgtgtcgta tcatggatgc caagtttcga taaaatcgtt ttaatttcag
    12541 cactataatc ccaagcactg taagcatcca tatcagcttg agctgccatc attgcatcaa
    12601 acgctttgtc agtctgttgt tctgcgtatt gtgcagtagc ttcttcataa cgtttaatga
    12661 cttgcaactc tttggaatct gcactataaa ccgcttcata aaccgttaac gttggctcca
    12721 aattatgatt ttgtgccgca taacgaatac gatattgttt cggatgcgat tgaacggcat
    12781 caaaatcttc atccatgcct gcgatgactt tgagcaatga acttttcccc gttccattaa
    12841 taccaactaa tccgattcgc tcttgattgg aaatggataa ctgtaaatca tcaaaaatga
    12901 ctttatccgc ataagatttg ttgaggcgtt caattttata cgcttccaca acacatacac
    12961 cctttttctt atagatttac tcgcatttat ctgttaacct taaatcagtt ctatatatta
    13021 tacacttttt ttggaacaaa tgatacaagg agctatttct atgttggatt atatttcaaa
    13081 catgccgccc tttttacaag cattacttgc aggtgtcatc acgtggttat taaccgcatt
    13141 aggggctgca accgtatttg tatttaaaag tgtcaacgaa aaagtgttga attcgatgca
    13201 aggctttgct gctggtatta tgatcgccgc aagtttttgg tcattactcc aaccggccat
    13261 tgaaagcagt tcgggcagta ctgtaccgtg gctccctgct gcaattggct ttttactcgg
    13321 cggggttttc atccgttctt tagactatgt tattccacac atgcatcgaa acgcaactga
    13381 tgaatcacaa catcaagaag gtgttgagac gagtctaaat aaaaacacac ttttattact
    13441 tgcgattaca ttgcataaca ttcctgaagg gctcgcaatc ggggttgcct ttggtggtat
    13501 tgcgacagga aatgaacacg caactttgtt aggggcactc ggacttgcaa ttggtattgg
    13561 gattcaaaac attcctgaag gggctgcatt atcattaccg atacatgctt caggacagtc
    13621 caaatggaaa gccttcaact atggacaagc ttcagcactt gtagaacctg tttttgctac
    13681 agtgggcgca gctgctgtat tggtcgttac tccgatacta ccatacgcac tcgcttttgc
    13741 tgcaggggcg atgatttttg tcgtcgttga agaattaatt cctgattcac aagccggtaa
    13801 aaacacagat cttgcgacac taagcttgat ggttggcttt accatcatga tgatattaga
    13861 tgttgcttta gggtaaattc aaaaaaccgt tcaatgtgat gaaacactga gcggtttttt
    13921 gatgtgtaca tatatcgata cattaaaaat actctttaac aactcacaac aaagatttca
    13981 cactgttgac tatata
//
LOCUS       DANHOL010000059        13969 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.059, whole genome shotgun sequence.
ACCESSION   DANHOL010000059 DANHOL010000000
VERSION     DANHOL010000059.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 13969)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13969)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13969
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.059"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            79..522
                     /locus_tag="PTC08_001266"
     CDS             79..522
                     /locus_tag="PTC08_001266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002480577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HDK5682779.1"
                     /translation="MTKLYPYIAFENTKEALEYYEEVFGATEINRLPVTKEQAGHFGL
                     SQEDATDATMHAEFTIASTQLFASDSFGKAASINGAISLMLDYDVNVGEDAQEIEALY
                     DRVKDHNSITVEMPLAEQFWGGKMGVFTDRYGIRWMIHGQDTTAQ"
     gene            complement(646..1950)
                     /locus_tag="PTC08_001267"
     CDS             complement(646..1950)
                     /locus_tag="PTC08_001267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrkH family potassium uptake protein"
                     /protein_id="HDK5682780.1"
                     /translation="MYSKRQPILFYLILFLSTTFIGSLLLYLPWTGQKPISFVDAMYV
                     ATSAFTVTGLTTVDITEQFNVLGHTVIMLLIQIGGMGIVAVSLLTLMISQKKITFQNN
                     QLFKLELNIDETINVVNFAKFIFIFTVVFEALGAMILATVFVPEYGWSKGMFISVFTS
                     ISALNNAGFSLFSDNLVSYASDPVVNLMIAILIIVGGIGYIVLFDLMTTRHLKRLHVH
                     TKVTLFVTFILIVVGTLGFLILEHHHALKGMSFPQQILVSFFQSVSTRTAGFNTIDFS
                     HLAPGTLMLTMILMFIGAGPISAAGGIKVTTFTLVLLYVITSLKGHRYTQVFHRSIDQ
                     KQTQKAVAITLTAMMFIIFIIFWFAVAQPNLQFEAIAFEVISAFGTVGLSTGISTEYD
                     TFAKALIIITMIAGKIGVLTLLGVLHNRTRETFHYAKSHLYL"
     gene            complement(2337..2543)
                     /locus_tag="PTC08_001268"
     CDS             complement(2337..2543)
                     /locus_tag="PTC08_001268"
                     /inference="COORDINATES: protein motif:HMM:NF033425.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-1/alpha-2 family phenol-soluble modulin"
                     /protein_id="HDK5682781.1"
                     /translation="MPNCKKNSSLFTLKHSNKRVRPYPPFNHPHRLKYGYSINKEEVI
                     AMMWADIILGIVKLIKGLIDTFKK"
     gene            2840..2971
                     /locus_tag="PTC08_001269"
     CDS             2840..2971
                     /locus_tag="PTC08_001269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011276027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-class phenol-soluble modulin"
                     /protein_id="HDK5682782.1"
                     /translation="MTELFDAIKNTIEAGINHDWVTLGTSIADIVANGINVISGFFG"
     gene            3285..3971
                     /locus_tag="PTC08_001270"
     CDS             3285..3971
                     /locus_tag="PTC08_001270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjjG family noncanonical pyrimidine
                     nucleotidase"
                     /protein_id="HDK5682783.1"
                     /translation="MSYKVILFDFDDTLVDFHDAEVQAYAHLMRHYAVPSQLHDYHRF
                     KEINQNHWEAFQRGEITKAEVLRHRFIETFATYGMTVDGQEADVVFRDGLARAPIKWL
                     TGIIPMLKTLQSNYALAIVTNGVTDTQERRIARTDLHSMMDHIFISDKIGAQKPNVAF
                     FEEVFKVFHQYDKKDFLIVGDSLTSDIQGGINSGIDTCWFNHRQLENKTSIQPTYTIN
                     HIEALKEILK"
     gene            complement(4161..4610)
                     /locus_tag="PTC08_001271"
     CDS             complement(4161..4610)
                     /locus_tag="PTC08_001271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HDK5682784.1"
                     /translation="MTKVEHLDINYKTEELFEDFRQNFGNKDLYMVNELHGEMIDASS
                     ESPFYGIYVGEKIGARMALYRKGEVEETFFPNFDDYLVVWKLEVLKKYQGKGYGSALV
                     AYAKSFDLPIKAIARNESKDFFIKNGFKDLEVKNDDGHDILVWEPQK"
     gene            4742..6355
                     /gene="bshC"
                     /locus_tag="PTC08_001272"
     CDS             4742..6355
                     /gene="bshC"
                     /locus_tag="PTC08_001272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacillithiol biosynthesis cysteine-adding enzyme
                     BshC"
                     /protein_id="HDK5682785.1"
                     /translation="MDCLNITVNESDQFINRLKQQDENILQFFDYDPVEEESYARRMQ
                     QPNNGREHEMAKVVRAYMADLNLSEAQQRALDALENGAKVVVGGQQAGLFTGPLYTFH
                     KIISIIVKANELESTYETPVVPVFWIAGEDHDFDEVNHTYVMQQRTGTLKKVKYHTMA
                     PPESNVSRYTPDKAALKQALTDYFAALPETPHSKVLYQQIAHFIDQADNWTSLFKQIV
                     HECFSQSGLLLIDAQFEALREIEVPLFKQIIQHHEQIDNAFRTQQQRTGAAGLTPMIQ
                     TDTNVHLFMHEDGQRQLLKYEDGVYRLSKSDVTFSQAALLQKIEATPTDFSNNVVTRP
                     LTEEWLFNTVAFIGGPSEIKYWAELQTVFHEMGIEMPIVLPRLRFTYVTPKIEKLLAS
                     YDLDLADMIANGTEAARQRFVRAQASEEVLVDMQQMLDQQHAFYERLQAQLNDSEDQR
                     KLLKKNHQIQTHQYEYLQSRYLKNIERENEISMRHFHLLSQTLHPMGGLQERIWNPLQ
                     LLNEFGMEMYTSSTFPPLRYSFDQYVIKT"
     gene            6502..6933
                     /gene="mraZ"
                     /locus_tag="PTC08_001273"
     CDS             6502..6933
                     /gene="mraZ"
                     /locus_tag="PTC08_001273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015900043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="division/cell wall cluster transcriptional
                     repressor MraZ"
                     /protein_id="HDK5682786.1"
                     /translation="MFMGEYENKLDAKGRMIVPSKFRYDLNERFILTRGLDKCLFGYT
                     LEEWQTIEEKMKSLPLTKRDARKFVRMFFSGAIEVEIDKQGRINIPAKLREYAHLDKE
                     CTVIGVSNRIEIWDRNTWNDFYDESEESFEEIAEDLIDFDF"
     gene            6951..7886
                     /gene="rsmH"
                     /locus_tag="PTC08_001274"
     CDS             6951..7886
                     /gene="rsmH"
                     /locus_tag="PTC08_001274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017724209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase
                     RsmH"
                     /protein_id="HDK5682787.1"
                     /translation="MFHHISVLLKETVDQLNIKEDGVYVDCTLGGAGHSQYLLNQLSD
                     EGRLIAIDQDMTAINHAKEKLQQDLHKVTFVHNNFRNLANILAELNIDKVDGILYDLG
                     VSSPQLDVPERGFSYQHNAKLDMRMDQTQPLSAYEVVNTWSYETLVKIFFRYGEEKFS
                     KQIARKIEARRQQQPIETTFDLVTCIKEGIPAKARRKGGHPAKRVFQAIRIAVNDELA
                     AFEDSLEQAIDHVKVNGRISVITFHSLEDRLCKQMFQEYEKGPDVPRGLPVLPEAYTP
                     KLKRVNRKPIVADATDLEDNHRARSAKLRVAEILK"
     gene            7905..8291
                     /gene="ftsL"
                     /locus_tag="PTC08_001275"
     CDS             7905..8291
                     /gene="ftsL"
                     /locus_tag="PTC08_001275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002446224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsL"
                     /protein_id="HDK5682788.1"
                     /translation="MAVERIYDTYQPQVEPQRKQSTQKQTIKKQVVVKLTRFEKMLYI
                     TLVTIIAVISIYMLSLKMDAYDTRGKIADLDQKIEKQTSQNSALKSETMENSSYKRIY
                     KKAEDQGMSLKNDNVKVVRKDGETKN"
     gene            8272..10425
                     /locus_tag="PTC08_001276"
     CDS             8272..10425
                     /locus_tag="PTC08_001276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein"
                     /protein_id="HDK5682789.1"
                     /translation="MAKRKIKIKKNKLGAVLLMGVFGLLFFLLVLRYGYVMLTGHSSG
                     EDLIAKANEKYLSHLDEDAERGKIYDRNGKVLAEDVDRFRLAAVIDPQASKDSDKPRH
                     VVDKKKTAKVLAKIIDMPEKDIEKRLNTKKAFQVEFGRSGQNLTYQDKEKIEKANLPG
                     ITLYPEVKRFYPNGKFASHLIGMAQKDPDSGKLKGALGVEKIFDSYLKGKAGHTSFTK
                     DIWGYIIPNSKNEVAPQRGDDVHLTIDSNIQVFVEEALDKMVEHYEPKDIFAVVMDAK
                     TGEILAYSQRPTFNPDTGEDFGKKWANDLYQNTYEPGSTFKSFGLAAAIQEGEFKPDR
                     KYQSGYRDIQGSRIYDWNKKGWGEIDMSLGFTYSSNTLMMRLQDLVGADKMKSWYEKF
                     GFGKSTRSLFDGEQSGNIAWENELMQKTSAFGQSTTVTPAQMLQAQSAFFNKGEMLRP
                     YFVQSIINPVTKNTYYKGEREVTGKPIKNDTAKKVNKQLDEVVNSEDSHAKNYRVDGY
                     RIGGKTGTAQVADPENGGYVKGPNPYFVSFMGHAPSKNPRVVVYAGMSLAQKNDQEAY
                     EMGVSKAFNPIMKNTLQYLNVGDNEVDDSKTKISNVPDVENRSVQRAEDEIRGKKLNP
                     IVIGNGKKVVSQSPSSNGRLLPNSNVLLLTEGDLTMPDMTGWTRDDIVAFQSLTDIKI
                     DVKGSGFVKSQSKTPQSAIDKNTKLEVTLDSQKTE"
     gene            10625..11590
                     /locus_tag="PTC08_001277"
     CDS             10625..11590
                     /locus_tag="PTC08_001277"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HDK5682790.1"
                     /translation="MGLISAIIAFVITAVLVPILIPTLKRMKFGQSIREEGPQSHMKK
                     TGTPTMGGLTFLIGAIVTTIIASIFVEPASPLLLLLFVTIGFGLIGFIDDYIIVVKKN
                     NQGLTSKQKFLAQIAIAVIFFIVAKGFKAFNFSTDIHIPFTDVSIPLSFAYVIFIVFW
                     QVGFSNAVNLTDGLDGLATGLSIIGFTMYAIMSFAHEQPAIGVFCIIMVAALAGFLPY
                     NINPAKVFMGDTGSLALGGIFATISIMLNQEISLLFIGLVFVLETLSVMIQVTSFKLT
                     GKRVFKMSPLHHHFELVGWSEWKVVTVFWSVGLITGLIGLWMGVN"
     gene            11591..12940
                     /locus_tag="PTC08_001278"
     CDS             11591..12940
                     /locus_tag="PTC08_001278"
                     /EC_number="6.3.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanine--D-glutamate
                     ligase"
                     /protein_id="HDK5682791.1"
                     /translation="MIHYTGLRGKKVLVIGMAKSGYEAAKLLHRLGAEVTVNDGNDLS
                     NDAHAKDLEDLGISVVSGAHPLALLDEAPIIFKNPGIPYTVPIIQEAQKQGLKILTEV
                     ELSYLISEAPIIGITGTNGKTTVTSLIGDMFNKSRENGRLSGNIGFVASKVAQEVKTD
                     EYLVTELSSFQLLGIEHYRPHIAIITNLYSAHLDYHENLENYQNAKKRIFENQTESDY
                     LIFNDKQRHLIGTSKIRAKILYFSTQHRVDGIYVEKEYIVYNGVRLIHLDDIVLPGEH
                     NLENILAAVMAAILAGVSISAIVQSLSTFSGIAHRLQYIGNNKTNKYYNDSKATNTLA
                     TQFALSSFKQPVIWLCGGLDRGNGFDELIPYMNNVRVMVTFGETQDKFVKLGESQGKY
                     VIRAKDVTDAVAKVQDVIEPNDVVLLSPACASWDQYDTFEQRGERFIEAFRAHLPSH"
     gene            12956..13846
                     /locus_tag="PTC08_001279"
     CDS             12956..13846
                     /locus_tag="PTC08_001279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsQ/DivIB"
                     /protein_id="HDK5682792.1"
                     /translation="MTKEIPKINNEYLKEKRKKQRIQQRRVQRMIVGILVVIVLLILV
                     YMFTPISHIKSADIKGNHYVSKQDILKELDIQNHPRIYAYSSDDAETRLKQNELIDEV
                     TIEKGLFNPIEVNVKEHTIIAITTEKSRVVPMIENGKVLKDYKQEVPNEAPYIEGFKG
                     AEKRNLIDALQKMDRTTRAQISEIVSAPQKDQPHLIKLFMRDGIEVVGNTNTIAEKLK
                     YYPSMSQALEKDETGKLKKSGFIDLSVGATFIPYDNVNNGQTSSASAKEVQSGTASED
                     KAKDDLQKALNKIKDEESSE"
BASE COUNT         4682 a         2328 c         2893 g         4066 t
ORIGIN      
        1 ttatcataca ctttgtttct tttatctaac taaaaggtat atagtaataa agtaagtgat
       61 acgaaaggga tagggactat gacaaaatta tatccatata ttgcgtttga aaataccaaa
      121 gaagcgttag aatattatga ggaagttttc ggagccactg agattaatcg tttaccagta
      181 acaaaagaac aagcaggtca ttttggactg tcacaagagg atgcaactga tgcgacgatg
      241 catgcggaat tcactattgc ttcaacgcaa ttgtttgcgt ctgattcatt tggtaaagcg
      301 gcgtcaatta acggtgcgat ttcactcatg ttagactatg atgtgaatgt tggggaagat
      361 gctcaagaaa ttgaagcgct gtatgaccgc gtaaaagatc ataacagtat tacagtcgaa
      421 atgcctttag cagaacagtt ctggggcggg aaaatgggtg tatttacaga tcgatacggt
      481 attcgttgga tgattcacgg tcaagataca acggcacaat aattcaaagt agtcgcatag
      541 ggcagtgcgc tatcattgag atattgtccg gtgcatactt aggaatcaca tcaactaaaa
      601 acacgtcatc acattttaaa cagtgtgatg gcgtgttttg attttttata aatataaatg
      661 gcttttcgcg taatggaaag tttctcttgt gcgattatgt aaaacaccta acaatgtgag
      721 tacacctatt ttaccggcaa tcattgtaat aataatcagt gccttcgcaa aggtatcata
      781 ttctgtagaa atgcctgtag ataagcccac tgttccaaat gcggaaatga cttcgaaagc
      841 gatcgcctca aattgtaagt tcggttgcgc cactgcaaac caaaatataa taaagataat
      901 gaacatcatt gctgttaatg taatcgcaac tgctttttgt gtttgttttt gatcaatcga
      961 acgatgaaag acttgtgtat agcggtgacc tttcaatgag gtgatcacat ataatagtac
     1021 aagtgtaaat gttgtgactt taatcccgcc ggctgcacta atcggacctg caccaataaa
     1081 cattaaaatc atggtcaaca tgagtgtgcc cggcgcgaga tgtgaaaagt ctatcgtgtt
     1141 aaaaccggct gtacgtgtac tgacggattg gaaaaatgaa actaatattt gttgcggaaa
     1201 agacatccct tttaatgcgt gatgatgttc taatattaaa aagccgagtg tcccaacaac
     1261 aattaaaata aatgtgacaa ataatgtgac cttcgtatga acgtgaagtc gttttaaatg
     1321 gcgtgttgtc attaggtcga ataacacgat atagcctatc ccaccgacaa taattaatat
     1381 cgcaatcatc aaattgacta cgggatcact cgcataagaa actaaattgt cactgaataa
     1441 agaaaatcca gcattattga gtgctgaaat agacgtaaag acactaatga acataccttt
     1501 agaccatcca tactcaggca cgaatactgt tgcgaggatc atggcaccta gcgcttcaaa
     1561 tactaccgta aaaatgaaaa taaattttgc gaaattaaca acattgatgg tctcatcgat
     1621 gttaagttct aacttgaata attgattatt ttgaaatgta atcttctttt gtgaaatcat
     1681 tagtgtcaat agagacacgg ctacaattcc cataccgcca atttgaatga gaagcatgat
     1741 gacagtatga cctaaaacgt taaactgctc tgtaatatcc acggttgtca ggccggtcac
     1801 tgtaaaagca ctcgtcgcta catacatagc atcgacaaaa gaaatcggct tttgaccagt
     1861 ccaaggtaag taaagaagaa gactaccaat gaaagtagta cttaaaaata aaataagata
     1921 aaacaagata ggttgccttt tactatacat ctttgacgcc tcggttcttt ttgaagttat
     1981 aatatcacga tatgtttcaa aaacaaatca ctatttttca aaagtatatc aaatcggctt
     2041 tgaatcgtca catcgagcgc aggttttgta tgtattttgt agtgataaca tatagattgc
     2101 ttcataatga agggacggtg tgaagcataa tctttgcatg gatgcgcatg tgaaaagttt
     2161 acggacgaaa atggtaagcg ggtgaggtag tataaggggt gtaaggtggt caatgtgcag
     2221 agtagtattt gaacatcatg catgttgagc cagattgttg taagggaatc gaagtactat
     2281 tttactcact aaaaaaaggc cggacaattg aatgtctcag cctttatcat gtcggattat
     2341 tttttgaatg tatcgattaa ccctttaatt aatttaacaa tgcctaaaat gatatctgcc
     2401 cacatcatag cgatgacctc ctctttattt atactgtaac catattttaa acgatgcggg
     2461 tgattaaaag gaggatatgg cctaactcgt ttatttgaat gcttaagtgt aaataaagat
     2521 gaattctttt tacagttagg caatatatct ttgccaatat gttaatgata atccagaaac
     2581 taaatatatt gataagttaa atctgtaagt aatcttaatt atattttata gatgtttatc
     2641 aaaagtaatt attatctttt ggaaaacagt tgggcatctt aactgtgaaa aatgacgatg
     2701 gtttcagacg attaggaatg ctaaccaaca agttgagaaa gattgacggc aatatttata
     2761 aaatacgtta tagttaattt aacaaagcaa accgttcaat gctttgtaat ataaattatc
     2821 tttatggagg ggttctatta tgacagaatt atttgacgca attaaaaaca caatcgaggc
     2881 aggtattaac catgattggg tcacattagg cacaagcatt gctgatatcg tagcaaatgg
     2941 tattaatgta attagtggct tctttggtta attaatcgtt tctacttttg acaattgaat
     3001 atcaactttc cttaacaata aataaattca aatgtcgaat cagttaagat gatgaacttg
     3061 actattgata gagatgatag atttcgtgcg catagggtga acgtgggcac tggaatgtat
     3121 catctttttt tacgttgaat gacatgtcga agtgtgcaat caagtagtcc actctgtcat
     3181 agttttatcg gcccattctt actccatcag tgaaatcgta tgacagatca tacgtatttt
     3241 gatacactta gaaagattct tttgactttc gggaggcgtg aaatttgagt tataaagtaa
     3301 ttttattcga ttttgatgat acattggtag attttcatga cgctgaagta caggcatatg
     3361 cccatttaat gcgtcattat gccgtacctt ctcaactaca tgattatcac cgttttaagg
     3421 aaattaatca aaatcattgg gaagcatttc aacgtggaga aataacgaaa gcggaagtat
     3481 tgcgtcatcg ctttatcgaa acatttgcga catatggcat gacagttgat ggtcaagaag
     3541 cggatgttgt ctttcgtgat ggtcttgcac gtgctcccat taaatggctc acgggtatca
     3601 ttcctatgtt gaaaacactt caatcaaatt atgcattagc gatagtgacg aatggtgtaa
     3661 cagatacaca agaacgacgt atcgcacgaa cggaccttca ctccatgatg gatcatattt
     3721 ttatttcaga taaaattgga gcacagaagc cgaatgtcgc attttttgaa gaggtcttta
     3781 aagtgtttca tcagtatgat aaaaaggact tcctaatcgt gggggattca cttacttctg
     3841 atattcaagg tggtattaat tctggaattg atacttgctg gtttaaccac cgtcagcttg
     3901 aaaataaaac gtctattcaa ccgacgtata cgattaacca cattgaagca ttaaaagaga
     3961 ttttaaagta attcaagtaa ctaccatcat ttgtatggtt gtaatgtaag tggaagatga
     4021 ttagatttcc aaaaactaga ttatcatttt tcagaaatcc aatctcctca attttttaga
     4081 agggattcag gattgtctta aaattgaagg gtgctgttct tagtttttca actgagaaca
     4141 gcacccttca acttttgtta ttatttttgg ggttcccaaa cgagtatatc gtgcccatcg
     4201 tcatttttga cttctaaatc tttaaaacca tttttaataa agaagtcttt agactcattt
     4261 ctcgcaatcg ctttaatagg aaggtcgaat gattttgcat atgcgactaa tgcagaaccg
     4321 taacctttgc cttgatattt tttaagtact tcgagtttcc aaacgacgag ataatcgtca
     4381 aagttcggaa aaaatgtctc ttcaacttcg ccttttcgat aaagtgccat acgtgcgcca
     4441 attttttccc caacataaat accataaaat ggtgactcag aactggcatc aatcatctca
     4501 ccgtgcagtt cgttcaccat gtataaatct ttgttgccaa aattttgacg aaagtcttca
     4561 aaaagttctt ctgttttgta gttaatgtca aggtgctcaa cttttgtcat gtgattaccc
     4621 ccttgtcttt aataatttaa ttatagccta tttattttaa attttgaagc aagccgttag
     4681 attgtcatgt gcgtgtggaa cctttatact gttatggaat actgtttaag gagaaatgag
     4741 catggattgt ttaaatatta cagtcaatga gtcggatcaa tttataaacc gtttaaaaca
     4801 acaagatgaa aatatattgc aattttttga ttatgatccg gttgaagagg aaagttatgc
     4861 acgccgtatg caacaaccta acaatggtag agaacatgaa atggcgaaag ttgtgcgcgc
     4921 gtatatggcg gatttaaacc tttctgaagc ccaacaacgt gcactcgatg ctttagaaaa
     4981 tggcgcgaaa gtcgtcgtag gtggtcaaca agcagggttg tttactggtc cactttatac
     5041 tttccataaa attatttcta tcatcgttaa ggccaacgaa ctggaatcta catatgagac
     5101 gcctgtcgtt ccagtctttt ggattgcagg tgaggaccac gactttgatg aagtcaatca
     5161 tacgtatgtg atgcaacaac gaactgggac gctgaaaaaa gtgaaatatc acacgatggc
     5221 accaccagag tccaatgtgt cccgctatac ccctgataaa gcggcattga aacaagcatt
     5281 gactgattat tttgcagcat tacctgaaac accgcattcg aaagtattgt atcaacaaat
     5341 tgctcatttt atcgatcaag cagacaattg gacatcgtta ttcaaacaaa tcgtacatga
     5401 atgttttagt cagtcaggct tattattgat tgatgcccaa tttgaagcgt tacgtgaaat
     5461 agaagtgccg ttgttcaaac aaatcattca acatcacgag caaattgaca acgcttttcg
     5521 aacgcaacaa caacgtacag gtgctgctgg gttaacacca atgattcaaa ccgatacaaa
     5581 tgtccacttg ttcatgcatg aagatgggca acgtcagtta ttaaagtatg aagatggtgt
     5641 ctatcgttta agtaaatcgg atgtcacgtt cagtcaagca gcgttattac aaaaaattga
     5701 agcgacacca acagattttt ctaacaatgt ggtcacgcgt ccgcttaccg aagaatggtt
     5761 gtttaacact gttgcattta tcggtggacc gagtgaaatt aaatactggg cagagttgca
     5821 aacggtcttt catgaaatgg gcattgaaat gccgattgta ttgccgcgct tacgtttcac
     5881 atatgtgaca cctaaaatcg aaaaattgtt agcttcatat gaccttgatt tagcagatat
     5941 gattgcgaat ggtacggaag cagcacgtca acgttttgta cgtgctcaag cttctgaaga
     6001 ggtgcttgtg gatatgcaac aaatgctcga ccagcaacat gccttttatg agcgtttgca
     6061 agcacagtta aatgattcgg aagatcagcg caagttactg aagaagaatc atcaaatcca
     6121 aacccatcaa tatgaatatt tacagtcacg ttaccttaaa aatattgagc gtgaaaatga
     6181 aattagtatg cgacacttcc atttattgtc acaaacgtta catccgatgg ggggattgca
     6241 agaacgtatc tggaacccac tccaattatt aaatgaattt gggatggaga tgtacacgtc
     6301 ctccactttc cctccacttc gttactcttt tgatcaatat gtcattaaaa catgataata
     6361 tcaacggttt gagaaccctt cttaatatga gcagggttct ttttttgtgt ctattttgat
     6421 aaatattgga gatttttaca gaattagtgg aggatagtgg tgagatgtgg taaattagaa
     6481 taaaggtgag gtgataatag aatgttcatg ggtgaatacg aaaataaact cgatgctaaa
     6541 ggccgtatga tagtaccatc aaaatttcgt tatgacttaa atgaacgttt tattctcaca
     6601 agaggccttg ataaatgttt atttggttac acacttgaag aatggcaaac gattgaggag
     6661 aaaatgaaat ccttaccttt aactaaacgt gatgcacgta agtttgtgcg catgttcttc
     6721 tcaggtgcta tcgaagtgga aatcgataaa caagggagaa ttaacatccc agctaaatta
     6781 agagagtatg cacatcttga caaagaatgt acggtgattg gtgtgtcaaa tcgaattgag
     6841 atttgggatc gcaacacttg gaatgatttc tatgatgaat ctgaagagag ctttgaagag
     6901 attgcagaag acttaattga ttttgatttt taaaaaacgg agggttcgcg gtgtttcatc
     6961 acattagcgt gttattaaaa gaaactgtag accaactgaa tattaaagaa gatggcgtct
     7021 atgttgattg cacgttaggt ggcgcaggac attcgcaata tcttctgaat caattatcgg
     7081 atgaaggtcg attgattgcg attgatcaag atatgacggc aatcaatcat gctaaagaaa
     7141 aattgcaaca agatttacat aaagtcacgt ttgtacataa caactttaga aatttagcta
     7201 atattttagc tgaattaaac atagacaaag tggacggcat tttatatgac ttaggtgttt
     7261 cgagcccgca actggatgta ccagaacgag ggtttagtta ccaacataat gccaagttag
     7321 acatgagaat ggatcaaacg caacctcttt ccgcctacga agttgtcaat acgtggtctt
     7381 atgaaacact cgtaaaaatc ttttttcgat atggggaaga aaaattttcg aaacaaatcg
     7441 cacgaaaaat tgaagcaaga cgacagcaac aaccgattga aaccactttt gatctagtga
     7501 cgtgtattaa ggaagggatt ccagcaaaag cacgacgtaa aggtggtcat cctgcgaaac
     7561 gtgtatttca agcgattcgt attgcagtga atgatgaact tgctgcattt gaagattcat
     7621 tagaacaagc gattgaccat gtgaaagtga acggacgaat ttctgttatc accttccatt
     7681 cattagaaga tcgtttatgt aagcaaatgt ttcaagagta tgaaaaaggg ccagacgtcc
     7741 caagaggatt acccgtactt ccagaagcgt acacacctaa attgaaacgt gtgaaccgaa
     7801 aaccaatcgt agcggatgcg acagacttag aagacaatca tcgtgcgaga agtgcaaaac
     7861 ttcgagtagc cgaaatatta aaatagaggg gcgaaaaaga gactatggct gtagaaagaa
     7921 tatatgatac ctatcaaccg caagtcgaac cacagagaaa acaatcgaca caaaaacaaa
     7981 ctatcaagaa gcaagttgtt gtcaaattaa cacgatttga aaagatgtta tacataacgc
     8041 tagttacgat tattgctgtc atcagtatct atatgctatc tttaaaaatg gatgcatatg
     8101 atacgagagg gaaaattgca gatttagatc aaaaaataga aaagcaaaca agtcaaaata
     8161 gcgcattaaa gtctgaaaca atggagaatt catcgtacaa acgcatttat aaaaaggctg
     8221 aagatcaagg gatgagcttg aagaacgaca atgtaaaggt agtgcgtaaa gatggcgaaa
     8281 cgaaaaatta aaattaaaaa aaataagcta ggagcagtcc tcctgatggg tgttttcggg
     8341 ctgctctttt ttcttttggt tttaagatat ggctatgtca tgttgacagg acactcgtca
     8401 ggggaagact tgatcgccaa agcaaatgaa aaatatttat ctcatttaga tgaagatgct
     8461 gaacgaggta agatttatga ccgtaacggt aaagttttgg cagaagacgt ggaccgtttc
     8521 cgtttggcag cagttattga tccacaagca agtaaagatt cagacaaacc acgtcacgtt
     8581 gtggataaga aaaaaacagc taaagttctc gctaaaatta tcgatatgcc tgaaaaggac
     8641 atcgagaagc gtctcaacac gaaaaaggca ttccaagtcg agttcggccg atctggtcaa
     8701 aatctgactt atcaagataa agaaaaaatt gaaaaagcga atttacctgg gattacactt
     8761 tatccggaag tgaagcgctt ttatccaaat ggtaagtttg cctcacactt gattgggatg
     8821 gcacaaaaag atcccgatag cggcaaatta aaaggggctt taggcgttga aaagattttc
     8881 gacagttatc ttaaaggtaa agccggccat acttcattta caaaagatat ttggggttac
     8941 attattccga attcgaaaaa tgaagtcgca ccgcaacgtg gcgatgatgt gcatttaacg
     9001 attgattcta atattcaagt ctttgtggaa gaagcattag ataaaatggt tgagcattat
     9061 gaaccaaaag acatcttcgc cgttgtcatg gatgcgaaaa caggtgaaat cttagcttat
     9121 agtcagcgtc caacattcaa tccagataca ggtgaagatt ttggtaaaaa atgggcgaat
     9181 gatttatatc aaaatacgta tgaaccaggt tcgacattca aaagttttgg tttagccgca
     9241 gcgattcaag aaggggaatt taaaccagac cgtaaatatc aatcgggtta cagagatatt
     9301 caagggtcac gtatttatga ctggaataaa aaaggttggg gcgaaattga tatgagtctc
     9361 ggcttcacgt attcatctaa tactttgatg atgcgccttc aagaccttgt cggtgcagac
     9421 aaaatgaagt cttggtatga aaagttcggt tttggcaagt caacgcgaag tttgtttgat
     9481 ggtgaacaat ccggcaatat tgcctgggaa aatgaattga tgcaaaaaac atctgcgttc
     9541 ggtcaatcga caacagtcac gccggcacaa atgttgcaag cgcaatcggc atttttcaat
     9601 aaaggcgaaa tgttacgccc atacttcgtc caatccatta taaatcctgt gactaaaaac
     9661 acatattata aaggtgaacg cgaagttacg ggcaaaccga ttaaaaacga tacagcgaag
     9721 aaagtgaaca aacaattgga tgaagtggtg aacagtgaag atagccatgc gaaaaactat
     9781 cgtgtcgacg gatatcgtat tggtggtaaa acaggtactg cacaggtggc tgaccctgaa
     9841 aatggcggct atgtgaaagg acctaatcca tactttgtga gctttatggg gcatgcgcca
     9901 agtaaaaatc cgcgtgttgt tgtttatgca gggatgagct tagcgcaaaa gaacgatcaa
     9961 gaagcatacg aaatgggtgt cagcaaagca tttaatccga ttatgaaaaa cactttacaa
    10021 tatttaaatg tcggcgataa tgaagtagat gacagtaaaa cgaagatcag caatgttcca
    10081 gatgttgaaa atcgtagtgt acaacgtgct gaagatgaga ttagaggtaa aaaactcaac
    10141 ccaattgtca ttggtaatgg taaaaaagtt gtgagtcaat cgccgtcatc aaatggtcga
    10201 ttattgccaa atagtaatgt cctcttgtta actgaaggtg atttaacaat gccagatatg
    10261 acaggatgga caagagatga tattgtcgcc ttccaatcat tgacagatat caaaattgat
    10321 gtcaaaggca gtggttttgt gaagtcgcaa tcgaaaacac cacagtcagc gatagataaa
    10381 aacactaaac ttgaagtaac attagattcc caaaaaacag aataggcaac gtgataaaca
    10441 gacactgtgc gaaaggctat cacggcatgt tgatgtttat gacgatgcgt aagttgaaaa
    10501 gaacggccat gaatgcaatc acttcagtcg acttatacga atacgcgcat tgaagtgatc
    10561 gcatcatgtt tagaatgact aagaatgtga gcaaaagaag agaagataag ataaggagaa
    10621 tattatggga ttgattagcg caattatcgc atttgttatt acagcagttt tagtaccgat
    10681 tttgattcca acattaaaaa ggatgaaatt tggtcagagc attcgtgaag aaggtccaca
    10741 aagtcatatg aaaaaaacag gtacaccaac gatgggtggg ttaacatttt taattggtgc
    10801 aattgttaca acgataatcg caagtatttt tgtagaacca gcaagtccat tgctgttact
    10861 actctttgtc acaattggtt ttggtttaat tggctttatt gatgactata ttattgtagt
    10921 gaagaaaaac aaccaagggc ttacaagtaa gcagaaattt ttagcgcaaa tcgcaatcgc
    10981 agtcatcttc tttattgtcg ctaaaggttt taaagcgttt aatttctcta cagatattca
    11041 tattccgttt acagatgtga gtatcccgtt atcatttgct tatgtaattt ttatcgtgtt
    11101 ctggcaagtt ggtttttcta atgcagttaa tttaacagac ggtcttgatg gtttagcgac
    11161 agggttatct attattggtt ttacgatgta tgccattatg agttttgcgc atgaacaacc
    11221 agcaattggc gtattttgta ttatcatggt cgcagcttta gccggctttc ttccatataa
    11281 tattaaccca gcgaaagtgt tcatggggga tacaggaagt ttagcgctag ggggtatttt
    11341 cgctacaatt tcaattatgt taaaccaaga aatatctttg ttattcatcg gtctcgtttt
    11401 cgtactagaa acattgtcag tgatgattca agtgacatca ttcaagttaa caggaaagcg
    11461 tgtctttaag atgagtccat tacatcatca tttcgaatta gtcggttgga gtgaatggaa
    11521 agttgtgact gtattctggt cagtaggatt aattactggt ttaatcggtt tatggatggg
    11581 agtgaattaa ttgatacatt atacagggct tagaggtaaa aaagtactcg ttatcggtat
    11641 ggcgaaaagt ggttatgaag cagcgaaatt gttacatcgt ttaggcgctg aggtgacggt
    11701 gaacgatggc aatgatttat caaacgatgc tcacgcgaaa gatttagagg acttaggcat
    11761 tagtgtcgtc agtggtgcac atccgcttgc gttattagat gaggcaccga tcattttcaa
    11821 aaacccaggt attccatata cagtacctat tattcaagaa gcacaaaaac aaggattgaa
    11881 aattttaaca gaagtagaat taagttattt aatttctgaa gcaccaatta taggcattac
    11941 tgggacaaat ggtaaaacga cagtaacgtc attaatcggt gacatgttta acaaaagccg
    12001 tgaaaatggc cgtttgtcgg gaaatattgg tttcgttgca tcaaaagtcg cacaagaagt
    12061 gaagacagat gagtatttag tgacggaatt gtcttcgttc caattgctcg gtattgaaca
    12121 ttatcgtccg cacattgcga tcatcacaaa tctttattca gcgcatttag attaccatga
    12181 aaatcttgaa aactatcaaa atgcgaaaaa acgtattttt gaaaatcaaa ctgagagcga
    12241 ctatttaatt ttcaatgata aacaaagaca cctcattggt acatcgaaaa ttcgagctaa
    12301 aattttatac ttttctacgc aacatcgtgt agacggtatt tatgttgaaa aagagtatat
    12361 tgtttataac ggtgtacgtc tcattcattt agatgatatc gtattaccag gtgaacacaa
    12421 cttagaaaac attttagcag cagtcatggc ggcgatttta gcaggggtgt ccattagtgc
    12481 tatcgtccaa tcgttgtcta cgttttcagg cattgcacat cgtctgcaat acatcggcaa
    12541 taacaaaacg aataaatact acaacgattc taaagcaacg aacacattag cgacacaatt
    12601 tgcgttaagt tcattcaagc aacctgtcat ttggttatgt ggtggtttag accgtggaaa
    12661 tggttttgac gaactgattc cgtatatgaa caatgtgcgc gtaatggtga cgtttggtga
    12721 aacacaagat aaatttgtga agctaggaga gagtcaagga aagtatgtca ttcgagcaaa
    12781 agatgtgaca gatgctgtag ctaaagtcca agatgtcatc gaaccgaatg atgttgtatt
    12841 attatcccct gcttgtgcaa gttgggatca atatgacacc tttgaacaac gtggagaacg
    12901 ttttattgaa gctttcagag cacatttgcc atcacattaa aggatgtgac gattgatgac
    12961 aaaagaaata cccaagatta ataacgaata tttaaaagaa aagagaaaaa agcaacgtat
    13021 tcagcaacgt cgtgttcaac gtatgattgt cgggatactc gttgtcattg ttttattgat
    13081 cctggtttat atgtttacac ctatcagtca cattaaaagt gctgacatta aagggaacca
    13141 ttatgtgtct aagcaagata tcttgaaaga gctggatatt caaaaccatc cacgcattta
    13201 cgcctatagt tctgatgatg ctgagacacg tttgaaacaa aacgaattga ttgatgaagt
    13261 gacgattgaa aaaggactgt tcaatccgat cgaggtcaac gtgaaagaac atactatcat
    13321 cgcaatcacg acagaaaagt cacgtgtggt cccaatgatt gaaaatggca aagtgttaaa
    13381 agattataaa caggaagtac cgaatgaagc accttacatt gaagggttta aaggtgctga
    13441 aaaacgcaat ctcattgatg ctttacaaaa aatggatcga acgacgcggg cacaaatttc
    13501 agaaattgtg agtgcaccac aaaaagatca accccattta attaaactgt tcatgcgtga
    13561 tgggattgaa gtcgttggga atacaaacac cattgctgaa aagttgaaat actatccaag
    13621 tatgtcacaa gctttagaaa aagatgaaac aggcaaattg aaaaaatctg gttttataga
    13681 tttatcagtt ggtgcgacat ttattcctta tgacaatgtg aacaacggac aaacaagttc
    13741 ggcgagcgcc aaagaagttc aaagtggtac agcgagtgaa gacaaagcta aagatgattt
    13801 acaaaaggct ttgaacaaga ttaaagatga agaatcatcg gaatagcaaa gttgaggctc
    13861 aaaaatattt tgttatcata atgattttga gccgccatct accttgtaaa tagatgattg
    13921 cgcgttacaa aaagattaca ttaatatata aatgtgataa aaagttgaa
//
LOCUS       DANHOL010000060        13930 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.060, whole genome shotgun sequence.
ACCESSION   DANHOL010000060 DANHOL010000000
VERSION     DANHOL010000060.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 13930)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13930)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13930
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.060"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(297..1394)
                     /gene="ychF"
                     /locus_tag="PTC08_001280"
     CDS             complement(297..1394)
                     /gene="ychF"
                     /locus_tag="PTC08_001280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019469841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HDK5682793.1"
                     /translation="MALTAGIVGLPNVGKSTLFNAITKAGALAANYPFATIDPNVGIV
                     EVPDTRLTQLEAIVNPKRTVPTTFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQ
                     VVRAFDDENVTHVAGRVNPIEDIEVINMELVLADLESVEKRLPRLEKMAKQKDKTAVN
                     EVRILTRIKETLENGQPVRSLEFNDEDQKYVNQAQLLTSKSMLYIANVGEDEINDVEN
                     DKVKAIREYAAQEDSEVIVISAKIEEEIATLDEEDKAMFLEELGIEEPGLNRLIRKTY
                     DLLGLATYFTAGVQEVRAWTFKEGMTAPQCAGIIHTDFERGFIRAEVTSYEDFVAHNG
                     EQGAKEAGKMRLEGKDYIMQDGDVVHFRFNV"
     gene            complement(1385..1606)
                     /locus_tag="PTC08_001281"
     CDS             complement(1385..1606)
                     /locus_tag="PTC08_001281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF951 domain-containing protein"
                     /protein_id="HDK5682794.1"
                     /translation="MASNYELNDIVEMKKQHACGTNRFKIIRMGADIRIKCENCQRSI
                     MLPRQTFNKKIKKVLEKASSNEKENETWL"
     gene            complement(1619..2509)
                     /locus_tag="PTC08_001282"
     CDS             complement(1619..2509)
                     /locus_tag="PTC08_001282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel family protein"
                     /protein_id="HDK5682795.1"
                     /translation="MNQLEAILKSMVQPLLDPETYSNLLTKLIIVLIYVLAAFIVVRI
                     LNKVIAQFFKVNNRSGKSTRAKRSKTLITLVQNVVGYIVWFITLTTVLSKFGISVESI
                     LAGAGVVGLAIGFGAQTLVKDVITGFFIIFENQFDVGDYVSIKNNSAPIAEGTVKSIG
                     LRSTRILSFTGELSIIPNGTMSEVTNFSVTNGVSIIDIPVSIHEKIDDVEKKMNLFLK
                     TIPKKYDIFIEPPEVLGVDKFNSYEVMIRVAGETLPGESFGGSRILRRELKEFLQSEG
                     IEAPMPTLVQLYQEQQNKEA"
     gene            complement(2575..3399)
                     /locus_tag="PTC08_001283"
     CDS             complement(2575..3399)
                     /locus_tag="PTC08_001283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HDK5682796.1"
                     /translation="MTEKWQSQQNDSEQVQRLALTEIRPNPYQPRKTFDAEKLTELAQ
                     SIAQHGVLQPIIVTQAIKGYHIVAGERRYRASLEAGLTDIPAIVKPFSDGEMRELAII
                     ENLQREDLNALEEAESYQQLMQHLTLTQQEIAARLGKSRPYIANMLRLLKLPVKIRTL
                     IREGQLSGGHGRTLLALKTPETMVHYAKLAIRESWSVRYLEQRVAEHTGSTQQATTRQ
                     QHTTKKPALIRQHEQQLKEQYGTSVEITTKKNVGEITFTFHSESDYRRLIQLLKNM"
     misc_binding    3585..3899
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00230"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="T-box leader; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="tRNA"
                     /db_xref="RFAM:RF00230"
     gene            3964..5076
                     /locus_tag="PTC08_001284"
     CDS             3964..5076
                     /locus_tag="PTC08_001284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020220248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent transferase"
                     /protein_id="HDK5682797.1"
                     /translation="MKATTLAQIALTQDNTGAIANPIYLSTAYQHEGLGLSTGFDYTR
                     TKNPTRQAFEDAFARLEGGIASFATASGMASIQLVCNLFKPGDEILVSFDLYGGTFRL
                     FEFYETQYGIHFHYIDFENTDAVKAAITPKTKALFIEPISNPLMIEIDLTPYYDIAAE
                     HALLTIVDNTFLTPYLSTPLLDGADIVLHSATKYIGGHNDVLAGVVTVKDADLAEKLG
                     QFHNMIGATLSPIDSYLLLRGLKTLHLRVERSQQNAQRFAATCEDLTGIQDVLYCGRT
                     GMLSLRLEPGYSVDQLLRQLKVLRFAESLGGTETFVTFPYTQTHIDMPDEEKNRRGID
                     QHLIRLSIGIEAYEDIEQDFIHALEKSKEVSTDDTF"
     gene            5063..6238
                     /locus_tag="PTC08_001285"
     CDS             5063..6238
                     /locus_tag="PTC08_001285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HDK5682798.1"
                     /translation="MTRSKQTELIHDTQRGVAYQCANQPLYYASTYHQQRLGEAVPYD
                     YARSGNPNRELLETKLAQLEGGKRAFAFNSGIAAITAVFLTLKAGDHVILPDDVYGGT
                     FRLTEQILSRFGLTFTTVNAENVAEIRAAIRPNTRLIYVETPSNPLFKITDIRKVVHI
                     AQAHDILVAVDNTFMTPLCQNPLALGANIVIHSATKFLGGHSDLIAGAVITNDDTLAE
                     ALYLIQNGTGTALSVYDSWTLTQHLKTFVVRYEQSVKSAQQIYHFLEAHPAIAQVYYP
                     GDNSVHLSQAKHGGAVIGFRLRDETYAQRFVDQLTLPLVSVSLGGVETILSHPYTMSH
                     AAIPQEIREARGITFGLFRLSVGLEDADELIADLDQALKEGSYESTTERTEKQYSRR"
     gene            6192..8033
                     /locus_tag="PTC08_001286"
     CDS             6192..8033
                     /locus_tag="PTC08_001286"
                     /EC_number="1.5.1.20"
                     /EC_number="2.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001831351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional homocysteine
                     S-methyltransferase/methylenetetrahydrofolate reductase"
                     /protein_id="HDK5682799.1"
                     /translation="MSRLLNALKNNILVADGAMGTILYSEGLDTCPEAYNLTHPDKVE
                     SIHRSYIQAGSDVIQTNTYGANFEKLQQFGLEHQVKAIHQAAVAIAKRAAGPDTFILG
                     TVGGFRSTKQGELSLSAIQYHTDIQVDTLVAEGVDGLLFETYYDDEELLNAIKQTRQK
                     YDIPIIAQLTASNTHYLVNGKEINSALQQLVEAGADIVGLNCHHGPHHMKRTFGHIEL
                     PGNAYLSCYPNASLLDIDQQTFKYSDNAQYFGETAEQLIQEGVQLIGGCCGTTPEHIR
                     KIKAAVQGLKPIKEKKVIPIHQKPTSEAPKPTRQNLAMRVRERPTIIVELDTPKHLDT
                     TKFFQNVKALDDAQIDAVTLADNSLATVRVSNIAAASLIKQQFNIEPLVHITCRDRNL
                     IGLQSHLLGLSLIGVNEILAITGDPSKVGHLPGATNVYDVNSKGLTELALRFNKGVNT
                     DGDTLKVATQFNIAGGFDPHVSNIKAAVRKMETKIKSGMHYFITQPVFTKEKIVEIYE
                     ATKHLDVPIFIGIMPITSYKNALFLHHEVPGIKMSDDVLAQFEAVANDRQATYELSLS
                     LCKSLIDTVHTYFNGLYLITPFERIDYSLELAAYSKSITTSHQEAIL"
     gene            8027..10270
                     /gene="metE"
                     /locus_tag="PTC08_001287"
     CDS             8027..10270
                     /gene="metE"
                     /locus_tag="PTC08_001287"
                     /EC_number="2.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002437223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine S-methyltransferase"
                     /protein_id="HDK5682800.1"
                     /translation="MMTIKTTNLGFPRLGHKREWKKAIESYWNNKITKAELDDTLQQL
                     HRSNLVLQQNYNLDSVPVGDFSLYDHILDTSLLFNIIPTRFQDRDVDDDLLFDIARGN
                     KSHVASALVKWFNTNYHYIVPEWDNVTPRVNRNRLLERFNEAKALNINAHPVIVGPVT
                     FVALSKGGDQSFEDKVRTLLPLYVEVLQSLIDAGAELIQIDEPILVTDKAAELEAITR
                     EAYEAFAEADVAKSLVIQTYFERANVKFLSALPVKGLGLDFVHDRGYNLQQIENGDFD
                     RSKTLFAGIIDGRNVWAADVEAKKALIEKLSQYSDDLYINPSSSLLHVPVSLEDEVLE
                     DDIRDGLSFATEKLETLDALKRAVNGNDTEAYDRLHAQYIRFQSQAFKNLEYDFESVR
                     AKRASAFSERKVVQQQRLNLPDLPTTTIGSFPQSPEVRKQRADWKNNRITDEAYRQFV
                     QDEIKRWIEIQEDIGLDVLVHGEFERNDMVEFFGEKLDGFLVTKFGWVQSYGSRAVKP
                     PIIYGDVKWTAPLTIDETVYAQSLTDKPVKGMLTGPVTILNWSFERVDIPRSTVQDQI
                     ALAINEEVLALEKAGIQVIQVDEPALREGLPLRKEYHEDYLVKAVHSFKLATSSVTDE
                     TQIHTHMCYSQFGQIIHAIHDLDADVISIETSRSHGDLIKDFEDIDYDLGIGLGVYDI
                     HSPRIPTEEEITTAIERGLQQIDRSLFWVNPDCGLKTRKEDEVKAALTVLVNSARKLR
                     QEAVEAN"
     gene            complement(10955..11788)
                     /locus_tag="PTC08_001288"
     CDS             complement(10955..11788)
                     /locus_tag="PTC08_001288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="urease accessory protein UreD"
                     /protein_id="HDK5682801.1"
                     /translation="MAISKWTGELDLTFKHDGRRTVNGKTYFQGGLKVIRPTYLNGSP
                     HPTMFLINLGGGFVDGDRYRMTVHFEPRTHAILTTQGATIVFKTLEDKVEQYQTFQLD
                     DESFMEFISDPIIGYSEAKFYQVNQFHLSPTASMFYTDILTPGYDKEGRQFNYHYLHL
                     KNEIYVDEKLVVFDNLKLDTQKNKVTHMGYMEGFTHMASCFYISPGVNQKVVEAVQEV
                     VTPYIDEHCRVGVTLLPTHGLTFRILAYSTDVIQRVIHAVHQYVMETYHEEDAQFLRK
                     Y"
     gene            complement(11788..12399)
                     /gene="ureG"
                     /locus_tag="PTC08_001289"
     CDS             complement(11788..12399)
                     /gene="ureG"
                     /locus_tag="PTC08_001289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="urease accessory protein UreG"
                     /protein_id="HDK5682802.1"
                     /translation="MKPIKIGVGGPVGAGKTQLIEKLVKRLSEEKSIGVITNDIYTKE
                     DQKILVNSGVLPEDRIIGVETGGCPHTAIREDASMNFAAIDELMERHSDIELIFIESG
                     GDNLAATFSPELVDFSIYIIDVAQGEKIPRKGGQGMIKSDYFVINKTDLAQYVGASLE
                     RMAEDTEKFRKNRPFAFTNLKTDEGLDDVLNWIKKDIFFEGLA"
     gene            complement(12412..13104)
                     /locus_tag="PTC08_001290"
     CDS             complement(12412..13104)
                     /locus_tag="PTC08_001290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020220251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="urease accessory protein UreF"
                     /protein_id="HDK5682803.1"
                     /translation="MINQAYLKLFQFCDSQFPTGAFSHSFGLETYIQRGDVHNGASFQ
                     AWLEVFLKEQLTYTDGLAMRLVYEAIEANDTAAIERLDQLLFVQNIPRETRNGTKQMG
                     KRMIQLARMIYHEDQWLDWYGEKAAAYELHTHPAVVFTLLGYHLGIEIEKIIDYYYYQ
                     NVSSLTQNAVRAIPLGQTEGQTIVADMIPFITTTREGVMQLDEADFGLTAPGIEMNQL
                     EHENVDVRIFIS"
     gene            complement(13097..13552)
                     /gene="ureE"
                     /locus_tag="PTC08_001291"
     CDS             complement(13097..13552)
                     /gene="ureE"
                     /locus_tag="PTC08_001291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="urease accessory protein UreE"
                     /protein_id="HDK5682804.1"
                     /translation="MIVEEIQGNIANLSQEDKNIHIEKVYLENSDLVKRIQRVTSDHG
                     TEIGIRLSQPIDLQYGDILYRDDKNMIIIDVNSEDIIAIKPRTIKEMGDIAHQLGNRH
                     LPAQFTDDNEMLVQYDYLVEDLLKGLGIPYQREDRKVNQAFKHIGHSHD"
BASE COUNT         4145 a         3034 c         2596 g         4155 t
ORIGIN      
        1 tacttctttt ttgataaact caatactcgg attatctaac ttttgataag ctttattctt
       61 ctttttcttc ataaaaaata cactcctttc acctttaata aaagtagtga aagaagtgat
      121 atacgatgac atattacatc attttgttgt ttacgcaatc acacagcaag aacgacaagc
      181 aatgttatcc ttacaaattc aacattttgc ttaaattttt gaattacaca aaaattgatt
      241 gttgttctta ccattttttc aaatgctcaa aaacgttgat atgacggttt tatcacctac
      301 acattaaaac ggaaatgcac gacatcgcca tcttgcatga tatagtcttt accctctaag
      361 cgcattttcc ccgcttcttt tgcaccttgt tcaccattat gtgcaacgaa gtcttcgtag
      421 ctcgtcactt cagcacgaat gaaaccacgt tcaaagtctg tatgaatgat acccgcacat
      481 tgtggcgccg tcatcccttc cttaaacgtc catgcacgca cttcttgcac acctgctgta
      541 aaatacgtcg ccaatcctaa taaatcatat gttttacgaa ttaaacgatt caaaccaggc
      601 tcttcaatcc ctaattcttc caagaacatc gctttatctt cctcgtctaa tgtcgcaatc
      661 tcttcctcga ttttggcact gatgacgatc acttctgaat cttcttgtgc cgcatactca
      721 cgaatcgctt tcactttatc attttctacg tcattaattt catcttcacc aacgtttgcg
      781 atatataaca tcgattttga tgttaacaat tgcgcttgat tcacatactt ttgatcttca
      841 tcattaaatt ctaaactacg gacaggttgc ccattttcaa gtgtttcttt aattcttgtt
      901 aaaatacgca cttcattcac ggctgttttg tctttttgtt tcgccatttt ctctagacgt
      961 ggcaaacgtt tttcaacaga ttctaaatcc gctaatacta actccatgtt aatcacttca
     1021 atatcttcaa tcgggttcac gcgtcctgca acgtgtgtca cattttcatc atcgaatgca
     1081 cgcacaactt ggcaaatggc gtcaacttcg cgaatatgtg ataaaaattt gtttccaagc
     1141 ccctctcctt ttgaagcgcc tttcacgata ccggcaatat ctgtaaattc aaacgttgtg
     1201 ggtaccgttc ttttcggatt tacgattgct tctaattgtg ttaaacgtgt atcaggtacc
     1261 tcaacgatgc cgacgtttgg atcaatcgtt gcgaaaggat agttggcagc aagtgcacct
     1321 gcttttgtaa ttgcgttaaa taaagttgat tttccgacgt taggtaagcc gacaatacca
     1381 gctgttaaag ccatgtttca ttctccttct catttgaact cgctttttcg agtacttttt
     1441 ttattttttt gttgaaagtt tgacgtggta acataatact gcgctgacaa ttttcacatt
     1501 tgatacggat gtccgcaccc atacgaatga ttttaaagcg atttgttcca catgcgtgtt
     1561 gcttcttcat ctctactata tcatttaatt cataatttga agccactcaa tttcacctct
     1621 atgcttcctt gttttgttgt tcttgatata actggacaag tgtcggcatt ggtgcttcaa
     1681 taccttcaga ttgtagaaat tcttttaact cgcggcgtaa aatacgtgag cctccaaagc
     1741 tttcacccgg caacgtttca cccgccacac gaatcatcac ttcatagctg ttgaatttat
     1801 cgacacctaa tacttcaggg ggttcgataa aaatatcata ctttttagga atcgttttta
     1861 agaagagatt cattttcttc tctacatcgt caattttctc atgaattgac actggaatat
     1921 caataatgga gacaccattc gttactgaga agttggtcac ctcgctcatc gtcccgtttg
     1981 gaataatcga aagctcacct gtaaacgata aaatgcgtgt cgaacgtaga ccaatcgatt
     2041 tgacagtccc ttccgcaatc ggtgcactgt tgtttttaat gctcacatag tccccgacat
     2101 cgaactgatt ttcaaatata ataaaaaatc ctgtaatgac gtctttcacg agggtttgtg
     2161 caccaaaacc aattgctaaa cctacaacgc cggcccctgc taaaatactt tcaacactaa
     2221 tgccaaattt gctcaatact gttgtcaaag taataaacca tacgatatag ccaacgacat
     2281 tttgaacaag tgtaattaat gtttttgacc ttttcgcacg tgttgattta cctgaacgat
     2341 tgttgacttt aaaaaattgt gcgatgactt tgtttaaaat acgaacaacg ataaaagctg
     2401 ccaacacata tattaaaacg ataatcaatt tcgttaaaag gttggaatat gtttctgggt
     2461 ctaataacgg ttgaaccata ctttttaata tcgcttctaa ttgattcata agtaactccc
     2521 ttctctatgc atcatcttga gtgatgtatg ttgatgcctg tgcccttttc gccattacat
     2581 gtttttaagc aattgaatca gtctgcgata gtcactttca gagtggaatg taaaagtaat
     2641 ctcgcctacg tttttcttcg tcgtaatttc tacacttgta ccatattgtt cttttaattg
     2701 ttgttcatgt tggcgaatca gtgcaggctt tttcgtcgta tgctgttgac gcgtggtcgc
     2761 ttgttgcgtg ctgcctgtat gttcagcgac gcgttgctcc aaatatctca cgctccaaga
     2821 ctcccggatg gctaactttg cgtagtgtac catcgtttcc ggtgttttga gtgcgagtag
     2881 tgtgcgcccg tgtccgcctg aaagttggcc ttctcttatt aaagtcctaa tcttaacagg
     2941 taacttaagt agtctcaaca tattcgctat atacggtctt gatttgccta accgtgccgc
     3001 gatctcttgt tgtgtcagag tcaaatgttg cattagctgt tgataacttt ctgcctcttc
     3061 taatgcattt aaatcttcac gctgtaagtt ttcgataatc gccagttcgc gcatctcacc
     3121 atctgaaaat ggtttaacaa tagctgggat gtccgttaag cctgcctcaa gacttgcccg
     3181 gtaacggcgt tcacccgcta cgatatgata ccctttgatc gcttgcgtta cgataatggg
     3241 ctgcaacacg ccatgctgtg caatcgattg cgcaagttct gttaactttt cagcatcaaa
     3301 cgttttgcga ggttggtacg gattcggtct aatttccgtc aatgccagtc gttgaacttg
     3361 ctcggaatca ttttgttgac tttgccattt ttcagtcatc cttctcacca acctttcaat
     3421 ttttttacca ttccatttta ctgtttgcac cattgagaca caagcttttc tccatgattt
     3481 taacagatgt acaatttctt tctcttctaa attttcagaa aacatattga caaccttttt
     3541 gacttcgtgt aaagtgtgtt ttatcaaagt acaacgtcat acgactaaac actataaaaa
     3601 ggaaagtaaa atgtcccctg catttacaga gagccttcgt tcgctgagag aaggtattga
     3661 aagcacgttt gaaaatggcc ttggagtgtt ggtaccgata tgaggtatca ccgggttcgc
     3721 ccgttatagc gactcagtat tcacattttg tggcacggta aagtattcca aagatatccc
     3781 tcacattccg tatctatcat acgctttact gtgcatacaa tttcgcgtac tggaagaggt
     3841 gatttgagca atcatgtcac gaacaaaggt ggtaccacga acaagctttc gtcctttata
     3901 tctaatatct tattggatct aaaggacgga agctttttta tttttgaaga ggaggttgaa
     3961 ctgatgaaag caacaacact ggcacaaatt gcgttgactc aagataacac tggtgctatc
     4021 gcaaatccaa tttatctctc tacggcatac caacatgaag gactcggact atcaacggga
     4081 tttgactaca cacgaactaa aaacccgacg cgacaagctt ttgaagatgc atttgcgcga
     4141 cttgaaggcg gtatcgcatc atttgcgacg gcaagtggca tggcgagcat ccaattggtc
     4201 tgtaaccttt tcaagcccgg tgatgaaata cttgtctcgt ttgacttata cggcggcaca
     4261 tttcgactat ttgaatttta cgaaacacaa tatggtattc actttcacta catcgatttt
     4321 gaaaatacag acgctgtaaa ggctgccatc acaccgaaaa cgaaagcctt atttattgaa
     4381 ccgatttcga atccgttgat gattgaaatt gatttgacac cttattatga catagcagca
     4441 gagcacgcgt tattaacgat tgtcgacaat acatttctca caccttattt gtcgacacct
     4501 ttactcgatg gtgcagatat cgtgttacac tcagcgacga aatatatcgg tgggcacaat
     4561 gatgtccttg ctggcgtcgt cactgtgaaa gatgcagacc ttgcagaaaa gttaggccaa
     4621 tttcacaaca tgattggtgc gacactttca ccgattgaca gttacttatt gttacgtgga
     4681 ttaaagacat tgcatcttcg cgtcgaacgg tcacaacaaa atgcgcaacg atttgcagct
     4741 acatgtgaag atttgacagg catccaagac gtgctctatt gcggacgaac aggcatgtta
     4801 agtttacgtc tcgagcctgg ttatagcgtc gatcaattgt tgcgacagct gaaagtattg
     4861 cgttttgcag aaagtttggg tggcacagaa acttttgtca ctttccctta tacacaaacg
     4921 cacatcgata tgccagatga ggaaaagaat cgtcgtggca ttgaccagca cttaattcga
     4981 ctttcgattg gtattgaagc ttacgaagat attgaacaag atttcattca cgcactcgaa
     5041 aaatcaaaag aggtgagcac agatgacacg ttctaaacaa actgaactga ttcatgatac
     5101 acaacgtggt gtcgcgtatc aatgcgccaa tcaaccgcta tattatgcat cgacgtatca
     5161 ccaacaacga ttaggcgagg ctgttcctta tgactatgcg cggagtggca atcctaaccg
     5221 cgaattactc gaaacgaaac tcgcacaact ggaaggcgga aagcgtgcgt tcgcattcaa
     5281 ctctggtatc gccgcgatta cggctgtatt tttaacatta aaagcaggcg accacgtcat
     5341 tttaccggat gatgtgtatg gtgggacgtt tcgacttaca gagcaaattt tatcgcgctt
     5401 tggcctgaca tttacaacag tgaatgctga aaatgtggca gaaattcgtg cagcgattcg
     5461 ccccaataca cggctcatct atgtagaaac accgtcgaac ccgctgttca aaattacaga
     5521 tattcgaaaa gtcgttcata tagcccaagc acacgacatt ttagtagcgg tggacaatac
     5581 gtttatgacg ccactttgcc aaaatccact ggcgctcggt gcaaatatcg tcattcatag
     5641 cgcaacgaag tttttaggcg gccatagcga tctcattgca ggggcagtta ttacaaatga
     5701 tgacacactc gctgaagcac tgtatttaat acaaaacggc acgggaaccg ctttgtccgt
     5761 atatgatagt tggacattga cacaacacct aaaaacattt gtcgtccgtt atgaacaatc
     5821 tgtcaaaagt gcacaacaga tttatcattt tttagaagca catccggcga ttgcgcaagt
     5881 gtactatcca ggagacaata gcgtacacct cagccaagca aaacacggag gtgctgtcat
     5941 tggcttccgt ttaagagatg aaacttatgc gcaacgattt gtcgatcagc tcactttacc
     6001 actcgtctca gtcagtctcg gcggtgtaga aacgattctt tcacaccctt atacgatgtc
     6061 acatgccgcc atccctcaag agattcgaga agcgcgtggc attacgttcg gactatttcg
     6121 attgagtgtt gggttggaag atgctgacga attaatcgcc gacctcgatc aagcattaaa
     6181 ggagggatcc tatgagtcga ctactgaacg cactgaaaaa caatattctc gtcgctgatg
     6241 gtgcgatggg gacgatttta tactcagaag gcttagacac ttgtcctgaa gcttacaatt
     6301 tgacgcatcc tgacaaagtt gaaagcattc atcggtcgta tattcaagct ggctcagatg
     6361 tcattcaaac gaatacatac ggtgccaact ttgaaaagtt acaacagttc ggattggaac
     6421 atcaagtcaa agcgattcat caagctgctg tagccattgc taaacgcgct gcaggacctg
     6481 acacattcat cttaggaacg gttggtggct ttagaagtac aaaacaaggc gaactgtcac
     6541 tgtcagccat tcaatatcat actgacattc aagtcgatac actcgtggct gaaggtgtcg
     6601 atggcctgtt attcgaaaca tattacgatg atgaagaatt actgaatgcg attaagcaaa
     6661 cacgacaaaa gtatgacatt ccgattattg cacaactgac cgcttccaac acacattatt
     6721 tagtgaatgg taaggaaatc aacagcgcat tacaacaatt ggtcgaagca ggtgcagaca
     6781 ttgtcgggtt gaattgtcac cacggcccac atcatatgaa acgtactttt ggtcatatcg
     6841 aattgccagg caacgcttac ttgtcgtgct atccgaatgc gagcttactc gatatcgatc
     6901 agcaaacctt taaatatagt gacaacgcgc aatactttgg tgagaccgcg gagcaactca
     6961 ttcaagaagg ggtccagctt atcggtggct gttgtggtac aacccctgag catattcgta
     7021 aaattaaagc agcagtgcaa gggttaaagc caatcaaaga gaaaaaagtg attccgatcc
     7081 atcaaaaacc aacgtcagaa gcaccgaagc caacacgtca aaatttggca atgcgtgtac
     7141 gagaacgacc gactatcatc gtcgaacttg atacaccaaa acatctcgat acgacgaaat
     7201 ttttccaaaa cgtcaaagct ctagatgacg cacaaattga cgctgtaacg ctagcggaca
     7261 attctttagc cacggttcgc gtatcgaata ttgcagccgc gagtttaatc aaacaacaat
     7321 tcaacatcga gccactcgtc cacattacgt gccgagatcg aaacttaatt ggactccaat
     7381 ctcacctcct cggtttatcg ttaatcgggg taaatgaaat tttagcgatt actggagacc
     7441 cttcgaaagt cggtcatctc cccggcgcaa caaatgtgta cgacgtaaat tcaaaaggat
     7501 taaccgaact tgcacttaga tttaataaag gggtgaatac agacggcgat acattaaaag
     7561 tcgccacaca gttcaacatt gcgggtggtt ttgatccaca tgtaagcaac atcaaagctg
     7621 ctgtacgtaa aatggaaaca aagattaaaa gtggcatgca ttactttatt acacagccag
     7681 tcttcacaaa agaaaaaatt gtcgagattt acgaagcgac aaagcatctc gatgtcccta
     7741 ttttcattgg gattatgccg attacgagtt acaaaaatgc attgttttta catcatgaag
     7801 tccctggtat caaaatgtca gacgatgtac tcgcacagtt tgaagctgtt gcaaatgata
     7861 gacaagcaac gtatgaactg agcctgtccc tttgcaaatc acttatcgac accgtccata
     7921 cgtatttcaa tggtctttat ttaattacac catttgaacg tattgattac tcattagaac
     7981 ttgcagctta ttcaaaatct attacaacat cccatcagga ggcgatatta tgacaattaa
     8041 aacaacaaac ttaggattcc caagacttgg acacaaacgt gaatggaaaa aagctattga
     8101 aagctactgg aacaacaaaa tcacaaaagc tgaattagac gacacgttac aacaattgca
     8161 ccgttcgaac ttagtactac aacaaaacta caatctggat agcgtaccag tgggcgattt
     8221 ttcattatat gatcacattt tggatacatc cttattgttt aatattatcc cgacacgttt
     8281 ccaagaccgt gacgtagatg acgatctcct tttcgacatc gcacgcggta acaaatccca
     8341 cgtcgcaagc gcactcgtaa aatggtttaa cacaaactat cactatatcg tacctgaatg
     8401 ggacaatgtg acacctcgcg tgaaccgtaa ccgtttatta gaacgtttta atgaagcaaa
     8461 agcgctcaat attaatgcac accctgtcat cgttggtcct gtgacattcg tagcactttc
     8521 taaaggtggc gatcaatcat ttgaagacaa agtacgtacg ttattaccac tttacgttga
     8581 agtattacaa tcacttatcg atgcaggggc agaactcatt caaattgacg aaccgatttt
     8641 agtgacagat aaagcggctg aattagaagc cattacacgt gaagcttacg aggcatttgc
     8701 ggaagctgac gtcgcaaaat cgttagtcat tcaaacatat ttcgagcgtg caaatgtgaa
     8761 gtttttaagt gcattaccag tcaaaggtct tggattagac tttgtacatg atcgcggcta
     8821 caatttacaa caaatcgaaa atggcgactt cgaccgttca aaaacattat ttgcgggtat
     8881 catcgacggt agaaatgtat gggctgcaga tgttgaagcg aagaaagctt taatcgaaaa
     8941 attatcccaa tattccgacg acttatatat caatccatct tcttcattat tacacgtccc
     9001 tgtttcatta gaagatgaag tgttggaaga tgacatccgt gacggtttaa gctttgcgac
     9061 agaaaaatta gaaacgttgg atgcattgaa acgtgctgtg aatggcaacg atactgaagc
     9121 atatgaccga ttacatgcgc aatatatacg tttccaaagc caagcgttca aaaaccttga
     9181 gtatgacttt gagagtgttc gtgcgaaacg tgcttcagct ttctctgagc gtaaagtcgt
     9241 gcaacagcaa cgtttaaact tgccagattt accgacaacg acgattggct cattcccaca
     9301 atcaccagaa gtgcgtaaac agcgtgcaga ttggaaaaat aaccgtatta ctgatgaagc
     9361 gtaccgtcaa ttcgtacaag atgaaattaa acgttggatt gaaattcaag aagatatagg
     9421 tttagacgtc cttgttcacg gtgaatttga acgtaatgac atggttgaat tctttggtga
     9481 aaagttagac ggcttcctcg taacgaaatt tggctgggta caatcatacg gctcacgtgc
     9541 ggtaaaacct ccaatcattt acggagatgt aaaatggaca gcaccattaa caattgatga
     9601 aaccgtatac gcacaaagct taacggacaa gccagtgaaa gggatgctga caggccctgt
     9661 aaccatctta aactggtcgt tcgaacgcgt ggacatccct cgctcaaccg ttcaagatca
     9721 aattgcgctt gcgattaatg aagaagtgtt agcgttagaa aaagcaggca tccaagtgat
     9781 tcaagtcgac gaaccagcat tgcgtgaagg cttaccattg cggaaagaat accacgaaga
     9841 ttacttagta aaagccgtgc atagcttcaa acttgcgaca tcttctgtga cggatgaaac
     9901 acaaattcat acacatatgt gctattcgca atttggacaa atcatccatg cgattcacga
     9961 cttagatgca gacgtcattt caatcgaaac ctctcgtagc catggtgacc tcattaaaga
    10021 ctttgaagac atcgattatg atttaggtat cggtctaggc gtttatgaca ttcatagccc
    10081 acgtattccg acagaagaag aaattacgac agcaattgaa cgtggtttac aacaaatcga
    10141 ccgttcatta ttctgggtca atccagactg tggtctcaaa acacgtaaag aagatgaagt
    10201 gaaagccgca ttgacagtgt tggtgaatag cgcacgcaaa ttacgtcaag aagctgtcga
    10261 ggcgaattaa tagtaaggac acgctttcaa agccagagag caatgagatt gaagtctttc
    10321 gattatactc gccattgaga acacaatcat cttcaataaa aaataggaca gacgttgaga
    10381 catttgtttc tcaacctttc ctatttttta tgtgtataag ttgtattaaa ataatccatc
    10441 aattcagctt aatttgtcat atgatgtttg gatttgctta attacaaaaa cttgtcttca
    10501 ttgattcacg atttaaatgc aagattgcca aagtggatga gactcccgag ggatgaagtt
    10561 gaaaacaaaa taacgtcatt taactttgat agtggctact gtttaacgca gtagctgtct
    10621 gacttctcaa tgcatatact tttgagaagt ctagtcatcc ttgcgggggc agtacgacga
    10681 aatctttgtg acacatgcga tttctgtact gctcccaaaa tccaatttgg cttccatcaa
    10741 atgtacaatt taaaaagcca aatttagttg aggcaagtcc cctgggaacg cgaatccata
    10801 gaggcaatcg caaaaggcat cattcatatc aaagaggaca aatatagaaa aatggttgtt
    10861 ttaagacccc ctcgagactt ccatacaaca caaaaagctt ctcttcccat ttcaattgag
    10921 gaaagaagct ttttatataa tgtattccat tactttaata ttttcttaaa aattgtgcgt
    10981 cttcttcatg gtacgtttcc ataacatatt gatgtacggc atgaatgaca cgttgaatga
    11041 cgtctgtaga ataggctaaa atacgaaatg ttaaaccatg agtcggaagc aatgtcacac
    11101 cgacacgaca atgttcatcg atataaggtg tcaccacttc ttgtaccgct tcaacgactt
    11161 tctgattgac acctgggcta atataaaaac aagaagccat atgtgtgaac ccttccatat
    11221 agcccatatg cgtcacttta tttttctgcg tatctaactt caaattatca aatacgacca
    11281 gtttttcatc cacataaatt tcgtttttga ggtgtaagta atgataatta aattggcgcc
    11341 cttctttatc ataacctggt gttaaaatat cggtataaaa catcgaagca gtcggactca
    11401 aatggaattg attgacttga tagaatttcg cctctgaata accaataatc ggatcactaa
    11461 taaattccat aaacgattcg tcatcgagtt gaaacgtttg gtactgctcg actttatctt
    11521 ccaatgtttt aaaaacaatt gtcgcacctt gagtcgttaa aatcgcatgc gtacgtggct
    11581 caaagtggac agtcatgcgg tatcggtcac cgtccacgaa tcctccgcct aagttaatca
    11641 aaaacatcgt cggatgagga cttccattta aataagtggg ccgaatgact ttaagcccac
    11701 cttggaaata cgttttccca tttacagtac gtctaccgtc atgtttaaag gttaaatcta
    11761 actcacctgt ccatttagaa attgccatta cgctaaccct tcaaaaaaga tgtccttttt
    11821 aatccaattt aacacatcat ctaaaccttc atccgttttt aagtttgtaa atgcgaacgg
    11881 acgattttta cggaatttct ctgtatcttc agccatacgt tctaatgaag cccctacata
    11941 ttgcgctaaa tctgttttat taatcacaaa gtagtcagat ttaatcatgc cttgaccacc
    12001 tttacgcgga atcttttcac cttgcgcgac gtcaataata taaattgaaa aatcaaccag
    12061 ttctggactg aatgttgctg ctaagttgtc accaccagac tcaataaaaa tcagttcaat
    12121 atctgaatga cgctccatga gttcatcaat cgccgcgaag ttcatggaag catcttcacg
    12181 aatcgctgta tgcgggcaac cccctgtttc cacaccgata atacggtctt ctggcaacac
    12241 gcctgagtta actaagattt tttggtcttc ttttgtataa atatcattcg taataacgcc
    12301 aatgcttttc tcctcagata gacgttttac aagtttttcg ataagttgtg ttttccccgc
    12361 gccaacaggt ccacctacac caattttaat cggtttcatg ctccattcct cctatgaaat
    12421 aaaaatacgt acatctacat tttcatgttc caactgattc atctcgatac caggtgctgt
    12481 caaaccaaaa tccgcttcat ccaattgcat cacgccctca cgtgttgtcg taataaatgg
    12541 aatcatgtca gctacgattg tttgtccttc tgtttgccct aacggtatcg cacgcacagc
    12601 attttgtgtt aagcttgaaa cattttggta gtagtaataa tcaataattt tttcaatttc
    12661 aatccctaag tgatagccta gcaacgtaaa cacgactgcc ggatgggtat gcaactcata
    12721 tgctgcggcc ttttcaccgt accagtccaa ccattgatct tcatggtaaa tcatacgcgc
    12781 aagctgaatc attcgtttcc ccatttgttt cgtcccattt ctcgtttctc gcggaatatt
    12841 ttgcacaaac agcaactgat ctagtcgctc aatcgctgcc gtatcattcg cttcgattgc
    12901 ttcatacacg agacgcatcg ccaaaccatc tgtatatgta agttgctctt tcaaaaatac
    12961 ctctaaccag gcttgaaatg aagccccgtt atgaacatct ccacgttgaa tatacgtctc
    13021 taacccgaaa gaatgactga acgcacctgt cggaaattga gaatcacaaa attgaaaaag
    13081 ctttaaatag gcttgattaa tcatgagaat gtcctatatg tttaaaggct tggttgacct
    13141 ttctatcttc acgctgataa ggaataccga gtcctttcaa taaatcttca actaagtaat
    13201 catactgtac caacatttca ttatcatctg taaactgcgc tggcaagtga cggttaccaa
    13261 gttgatgcgc gatatctccc atttctttaa tggtgcgtgg tttaatcgca ataatatctt
    13321 ctgagttcac atcaataata atcatatttt tgtcatcacg gtataaaatg tctccatatt
    13381 gtaagtcgat cggttgactc agacgaatcc caatttcagt gccatgatct gacgtgacac
    13441 gctgaatacg cttcactaaa tctgagtttt ctaagtatac tttttcaatg tgtatatttt
    13501 tgtcctcttg agataaattg gcgatgttac cttgaatttc ttctactatc atatctctgt
    13561 catctccttg aataacgata aatcacacca atgaatgcct ctttcatgac gtgtacattt
    13621 ctagcaaact agatagttgg tcaatgtgtc tcatttagta atttgcctag aagtactatc
    13681 aacgaccaaa tattattcaa tgataacata tcgctctata ctcgccataa aaaaacaaag
    13741 ttcgatgttt agttacttaa tactttatca tatttcagca ttgaaacgta agcaattgac
    13801 caacagaatc tttaacatta tgtcccactt atatcgttca cactcataaa aaagcagtcc
    13861 tttttacttt ttgaataaag tgatgcaact cagatatagt attgatgaaa agtacactca
    13921 cacgtatcac
//
LOCUS       DANHOL010000061        13815 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.061, whole genome shotgun sequence.
ACCESSION   DANHOL010000061 DANHOL010000000
VERSION     DANHOL010000061.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 13815)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13815)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13815
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.061"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(<1..696)
                     /locus_tag="PTC08_001292"
     CDS             complement(<1..696)
                     /locus_tag="PTC08_001292"
                     /inference="COORDINATES: protein motif:HMM:NF012318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HDK5682805.1"
                     /translation="MKKSKKCYLALIVVLFITLVMPNENTPSTPVAFAEKGNSYIIKD
                     SDRPPHNVVGKLLEGNVYGTGFVIGDNTVLTNKHVAKKMKVNSSVFKLGLNGGNHGKK
                     LLGEYIVTGMKYPPNAHDDVAILTVRSKNGSLPLSKVVKPANIANANFINKDWMKTEQ
                     NNLHIAGYPGNRNTNMMWGSSGHLLDYAFKSDRIFVADFDGYRGSSGSPVFDSQNQVI
                     GIHNSDYGADSGRT"
     gene            complement(1002..2276)
                     /locus_tag="PTC08_001293"
     CDS             complement(1002..2276)
                     /locus_tag="PTC08_001293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication-associated recombination protein A"
                     /protein_id="HDK5682806.1"
                     /translation="MLTEPLASRMRPRNIDEVIGQQHLVGETGIIRRMVNAKRLSSMI
                     FYGPPGIGKTSIAQAIAGSTAFKFRQLNAVTNTKKDMQMIVDEAKMSGQVILLLDEIH
                     RLDKAKQDFLLPHLENGKIVLIGATTSNPYHAINPAIRSRAQIFELFPLDKDDIKVAL
                     NHALEDEERGLKQFDASIDDDAFEYFATQSQGDVRSALNALELAVLSANNQPPHITLQ
                     DAEDCLQRGAFLSDKDGDMHYDVMSAFQKSIRGSDVDAALHYLGRLIQAGDLPTIARR
                     LLVISYEDIGLASPGAGQRTLAAIESAERLGFPEARIPLSQAVIELCLSPKSNSAIRS
                     IDAALSDIRKGHIGQVPDYLKDGHYQGAKALGRAIGYQYPHNHPNGFVAQQYLPDLLK
                     SKQYYTPKETSKAEQQFKQVYENIKQQQNELA"
     gene            2386..2805
                     /locus_tag="PTC08_001294"
     CDS             2386..2805
                     /locus_tag="PTC08_001294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002458938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rrf2 family transcriptional regulator"
                     /protein_id="HDK5682807.1"
                     /translation="MKISTKGRYGLTLMIALAKRHGTGCVSLKTIAEENGLSDLYLEQ
                     LVGPLRNAGLIRSVRGAKGGYELKMSATEITAGDIIRLLEGPLTIVERMESEPPGQQQ
                     LWLRMRNAVREVLDQTTLQSLADYQDKDALEGYMFYI"
     gene            2846..3676
                     /locus_tag="PTC08_001295"
     CDS             2846..3676
                     /locus_tag="PTC08_001295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HDK5682808.1"
                     /translation="MEQFTLKDGQFIDQLGFGTYKLNGTKGAHAMTDALNLGYRLLDT
                     AYNYENEGAVGRAIQQSHVQRDDIWVTSKLPGRYQSEAHVYETIQESLYRLGLDYLDL
                     YLIHWPNPKQGKFVEAWKAMIAVQKSGLVRHIGVCNFLPEHIEQLEKETGVLPAINQI
                     ELHPYFNQKEMIAYHEEKGILTQAWSPLGRDNGVMEEPALKQLSSKYDKTVAQVILRW
                     HIQNGVMPIPKATSSKRQLENFDIFDFHITDEDLQAIDQLTRADGRRKNQDPAVYEEF
                     "
     gene            3744..3929
                     /locus_tag="PTC08_001296"
     CDS             3744..3929
                     /locus_tag="PTC08_001296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017724656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CsbD family protein"
                     /protein_id="HDK5682809.1"
                     /translation="MANQENKFEQAKGNFKETVGNVTDNQSLENEGKQDKASGKAKEV
                     VENVKDKAQDMIDKFKK"
     gene            complement(4394..5410)
                     /locus_tag="PTC08_001297"
     CDS             complement(4394..5410)
                     /locus_tag="PTC08_001297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HDK5682810.1"
                     /translation="MMPKSMKYSALNLVPIREGNNEKEAISQMVALAQHLEQNQYERL
                     WIAEHHNAPNLVSSATALLIQHALHHTNEMRIGSGGIMLPNHAPLVVAEQFGTLNTLY
                     GDRVDLGLGRAPGTDMATASALRRDQHQGVYQFPDEVQQLLQYFGPDTIQGYVKAIPA
                     VDKNVPIYILGSSTDSAHLAARKGLPYVFAGHFAPQQMQEAIAIYKDLFEPSEYLQAP
                     YIIVCLNVIMADTDEEAQYLATTQSQIFASILRGRMNKMQPPTEDLSQLLSPREIAMA
                     EARLQHSLIGNKASVNQQLDAFLQKHGWIDEIMAISYIYDTDLQHRSYRYFKALIDER
                     NQKQ"
     gene            5619..6764
                     /locus_tag="PTC08_001298"
     CDS             5619..6764
                     /locus_tag="PTC08_001298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase"
                     /protein_id="HDK5682811.1"
                     /translation="MGVYADYAATTPVKPEVAEKMMAVYQTHFGNPSSIHSQGRDARR
                     LLDESRRTVAQYLNAKPNEVIFTSGATESNNTVIKGIAYANEAKGKHLITTKIEHHSV
                     LHVFEYLEQQGFEVTYLDVDAGGIIDLEQLKQSIREDTTLVSIMFVNNEVGTVQHVYD
                     IQDVLADHDVYFHMDAVQAVGHLPIDVEDLAVDALSMTAHKFGGPKGIGVLYVKTGTR
                     ITYPQLGGEQETKRRAGTENVPQIVGLATALTLAEASRDDNNVHLTRLKEQLIVGLQQ
                     RSIPFEYNGSMIDTTNHIINLHFPFVDVETLLTLLDLAGVYVSSGSACTAGSTIPSHV
                     LLAMYGEQSSRVDHSIRISLNEQVTEADIREIVIEIQKIYLKFKEEQ"
     gene            6764..7876
                     /gene="mnmA"
                     /locus_tag="PTC08_001299"
     CDS             6764..7876
                     /gene="mnmA"
                     /locus_tag="PTC08_001299"
                     /EC_number="2.8.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000066093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiouridine(34) synthase MnmA"
                     /protein_id="HDK5682812.1"
                     /translation="MTNQNTRVVVGMSGGVDSSVTAHLLKEQGYDVIGIFMKNWDDTD
                     EFGVCTATEDYNDVIAVCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMC
                     NKEIKFKAFLDHALKLGADYVATGHYARVRHHEDGSVEMLRGVDNNKDQTYFLNQLTE
                     AQLSKVMFPIGDIDKQKVREIALEQDLATAKKKDSTGICFIGERNFKTFLSQYLPAQP
                     GEMRTLNGELKGQHGGLMYYTIGQRHGLGIGGDGDPWFVVGKNLEDNILYVEQGFHHD
                     ALYSDYLIASDVSFVNATDLTEPLKCTAKFRYRQKDVGVTVTAHGDDAVKVTFDEPVR
                     AITPGQAVVFYDGDVCLGGATIDDVYKKDGQLDYVV"
     gene            7892..8566
                     /locus_tag="PTC08_001300"
     CDS             7892..8566
                     /locus_tag="PTC08_001300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HDK5682813.1"
                     /translation="MELEQIHQLIQQGQFERALQESFNNIEAHPDEVENYINSGVLLA
                     EAGEIEKAERFFQRALTIKPDNGVIYYNLANVYFNEGRFQEAVKLYQEALSHHVDHKD
                     TYYMLGLSLIQLDAKKQALPYIMRAAELDAQFEDLEVQFQFALLMCELEMFDQAIPVL
                     NQILERDPQHADAQYNLTLALYMLNENIDAAIQGFERAVQMDSQHLLSQHALKTFRLI
                     KAEEEA"
     gene            8569..10968
                     /locus_tag="PTC08_001301"
     CDS             8569..10968
                     /locus_tag="PTC08_001301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RecD-like DNA helicase"
                     /protein_id="HDK5682814.1"
                     /translation="MENPTLFDHTFIKGTVEMILFQNTDNHYTVLKVEIEETNGDFDD
                     MATVVGYFPNMVEDESYTFKGQIVQHARYGQQLKAETFQKEIPHTKDAVIAYLSSELF
                     KGIGKKTAESIVNTLGENAIHDILKDESVIEQVPKLSKAKQQQIVEQIYANQESEQVM
                     IRLNELGFGSKLAMDIYKFYKSDTLTVLDQNPYQLVYDIKGVGFNKADQLAQQLGIHP
                     EHPDRLKAGLLYLVEDTCIKQGHTYLPQEALINETIQLLSQGKDSSVDYDTMTQILAE
                     LVEEKRLVNQEEMVAIPSLYYSEIKSTQNLYKIFANREHLTTFDASDIQLHIGEIEEV
                     NEVHYAPSQKEALEYAIQHKVMLLTGGPGTGKTTVIKGIVQLYAEIHGISLDYDDYSD
                     EDDYPVVLAAPTGRASKRLHEATGLEAMTIHRLIGWNQDTKPQDKLDNEIHAKLIIID
                     EMSMVDTWLFHQFMDAVPIDAQVVLVGDEDQLPSVGPGQVFKDLIDANVLPRINLTEV
                     YRQQDGSSIIDLAHRMKLGEKVDITQRFHDRSFIPCQTDQIPQVVEKVVNNAVQKGYT
                     MADIQVLAPMYRGNAGIKKLNQILQGILNPLSDESQREIEFGDVLFRKGDKVLQLINR
                     PNDNVFNGDIGVIVGIFWAKENALNKDVVVVDYDGNEITYLRSDLTELTHAYCTSIHK
                     AQGSEFPIVIMPIVKQYFRMLQKPILYTGLTRAKQSLVFLGDADAFNIGLATAGQTRL
                     TQLQTFLMQYFTPEDTDDKTDTDTASAEFILTEATMFKIHPMINMGEVTPYDFLEIDK
                     V"
     gene            11214..>13815
                     /gene="alaS"
                     /locus_tag="PTC08_001302"
     CDS             11214..>13815
                     /gene="alaS"
                     /locus_tag="PTC08_001302"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HDK5682815.1"
                     /translation="MKKLKASDIRQMYIDFFVEKGHMVEPSAPLVPIDDDSLLWINSG
                     VATLKKYFDGREIPKKPRIVNAQKSIRTNDIENVGFTARHHTFFEMLGNFSIGDYFKR
                     EAIEFAWEFLTSERWMAMEPEKLYVTIHPEDTEAYDLWTNVVGLTEDRIIRIEGNFWD
                     IGEGPSGPNTEIFYDRGEAYGQDDSAEEMYPGGENERYLEVWNLVFSEFNHNKDHTYT
                     PLPSKNIDTGMGLERMTSISQDVRTNYETDLFMPIIGQVEAISGKKYLVDKDNDVAFK
                     VIADHIRTIAFAISDGALPANEGRGYVLRRLLRRAVRFSQTLEINEPFMYQLVEIVAD
                     IMEPYYPNVKEKGDFIARVIKSEEERFHETLEEGLAILNDLIKQAKSSNETIAGEDAF
                     KLYDTYGFPIELTEEITLNEGLAIDMDSFNDHMEAQRDRARKARQSSQSMQVQSEVLK
                     EINTVSKFLGYEAFETHAKITDIVRDGERVTMADAGETIHFILDQTPFYAVSGGQVAD
                     KGTVSNAQFEIQVTEVIKAPNGQHLHTGVVQFGEVREAAEVTATIDRQARTAIMKNHS
                     ATHLLHAALKKVLGEHVNQAGSLVDSDRLRFDFSHIAPMTAKEMKQVEQMVNEEIWNS
                     IPVEIQEMNIEDAKAKGAMALFGEKYGDIVRVVNMQPFSIELCGGTHVRNTSEIGLFK
                     ITSESGTGAGVRRIEAVTGQNAFLYLEHYLDQFNALKQQVKAKSDAQVIEKVEQLQYN
                     EKTLKQTIEDKNKALNELKMGNIKDQVETINDMSVLITEVEVDNAKAMRTTMDDFKSK
                     LQDSIIVLASDVGGKVSLIASVPKALTDRVKAGDIIKNMAPVVGGKGGGRPDMAQGGG
                     TEPGKITEALQ"
BASE COUNT         4521 a         2395 c         2835 g         4064 t
ORIGIN      
        1 ggtacgacca ctatctgcac cgtaatcact gttatgtatg cctataactt gattttgact
       61 gtcaaacact ggagaacctg aggaaccacg atacccatca aaatcggcta caaaaattcg
      121 atcactttta aatgcataat ctaacaaatg gccacttgat ccccacatca tattcgtatt
      181 tctatttcca ggatagccag caatatgtaa attattttgc tctgttttca tccaatcttt
      241 attaataaaa tttgcattag caatattggc aggcttgact actttgctca atggtaaact
      301 tccatttttg cttctaaccg ttagaatagc aacatcatca tgcgcattgg gagggtattt
      361 catgccagtg actatgtatt cacctaataa tttttttcca tgattaccac cattcaatcc
      421 tagtttaaac acactgctat ttactttcat ttttttagcc acatgcttat ttgtcagtac
      481 agtattatca ccaattacaa aacctgtccc ataaacattg ccttcaagca atttaccaac
      541 aacattatga ggtgggcgat cagaatcttt aattatataa ctattgccct tttctgcaaa
      601 agcgacggga gtagaggggg tattttcatt tggcattact agagtgataa ataatacgac
      661 aattaaagct aaataacatt tctttgattt tttcatttta taaacctcct tttgtaatta
      721 taaattatca tataaaaaga taaaatgcaa atagtattat tattttatat attgattttt
      781 aattcgaaca gttggaaata aggtatcaaa tgactataaa acatattaat gaaccctgcg
      841 aaagaagcat atgtaattaa aatcaaaaaa acagccaata aatgaagttt ttataatgtc
      901 atttattggc tgttttgtat ttgattacta aaaatataaa tagtcgtttc gtaatgaatg
      961 tgtcacagaa ctaaaaaaat tgtttcgata ttcttttctc actatgccaa ttcgttttgt
     1021 tgctgtttaa tattttcata tacttgttta aattgttgct cagctttaga tgtctcttta
     1081 ggtgtgtaat attgcttact tttcagcaag tcaggcaaat attgttgtgc tacgaagcca
     1141 tttggatgat tgtgtggata ttgatagcct attgcacgtc ctaatgcttt agcgccttga
     1201 taatgcccat cctttaaata gtccggcact tgaccgatat gccctttacg aatatcactt
     1261 aacgcggcat caatagaacg aattgctgaa ttagattttg gtgataaaca tagttcaata
     1321 actgcttggc taagcgggat acgtgcttct ggaaacccta acctttcagc ggattcgatt
     1381 gcagctaatg tccgttgacc ggcacctgga gaagctaaac cgatatcttc ataactgatc
     1441 acaagcagcc ttctcgcaat tgtaggaagg tctcctgctt gtatgagacg tcctaaatag
     1501 tgaagtgccg catcgacatc gctcccacga atagactttt gaaaggcact catcacgtca
     1561 taatgcatat ccccatcttt atcacttaaa aacgccccac gctgtaaaca atcttccgcg
     1621 tcttgtaatg tgatgtgcgg gggttgattg tttgcactta atacagctaa ctccaaagca
     1681 ttcaaagcac tccgcacgtc accttggctt tgtgttgcaa aatattcaaa cgcatcatcg
     1741 tcaatggaag catcgaattg ctttaggcct ctttcttcat cttccaatgc atggtttaaa
     1801 gcgactttaa tatcatcttt atcgagcgga aataattcaa aaatttgagc tcttgaacga
     1861 atcgctgggt taattgcatg atatggattg gaagttgttg caccgataag gacaatcttc
     1921 ccgttttcta aatgaggtaa taaaaaatcc tgtttcgctt tatctaatct atgaatttca
     1981 tccagtaata aaatgacttg tcctgacatt ttcgcttcat cgacaatcat ttgcatatcc
     2041 tttttcgtgt tcgttacagc gttcaattgt ctaaacttga aagcagtact gcctgcaatt
     2101 gcttgagcaa tacttgtttt tccgatgcct ggaggaccgt aaaatatcat agatgacaac
     2161 cttttcgcat tgaccatacg acgaataatc cctgtttctc caacgagatg ttgttgtcca
     2221 atgacttcat caatattccg tggacgcatt ctagaagcga gtggttcagt caacatcgtt
     2281 ttccctccat tgttattagt tttgtactct tatatacaat ggtattatat taatataaaa
     2341 aatgctaaaa taaaaataaa tcggatgatg taaggtgagg taaaaatgaa aatatccact
     2401 aaaggaagat atggtttaac attaatgatc gctctagcca aacgacacgg aactggttgt
     2461 gtgtcattga aaacgatcgc agaagaaaat ggtttaagtg atctctattt agaacaactc
     2521 gtaggcccac ttagaaatgc aggtctcatt agaagtgtga gaggtgcaaa aggtgggtat
     2581 gaattaaaga tgtcagcgac tgaaattact gcgggtgata ttatccgctt acttgaaggc
     2641 ccattgacta tcgtagaacg tatggaatct gaaccgcctg gacaacaaca attatggtta
     2701 cgtatgcgca atgcggtgag agaggtactt gatcaaacga cattacaatc actcgcagac
     2761 tatcaggata aagatgcttt agaaggctac atgttttata tttaatctca ttaggtgcaa
     2821 tttgctagaa tttaaggagg gtattatgga acagtttact ttgaaagatg gacaatttat
     2881 cgatcaatta ggcttcggca cgtataaatt aaatggaaca aaaggtgcgc atgcgatgac
     2941 ggatgccctg aatttgggtt atcgtttatt agacaccgca tataattatg aaaatgaagg
     3001 tgctgttggt agagcgattc aacagagtca cgtgcagcga gacgacattt gggtcacttc
     3061 aaaattacct ggacgttacc aaagtgaagc gcatgtttat gaaacgattc aagaatcatt
     3121 atatcgtctc ggtttagatt atcttgattt atacttaatt cattggccta atccgaaaca
     3181 aggtaaattt gtagaagcat ggaaagcaat gatcgcagta caaaaatctg gattagtcag
     3241 acatatcggt gtttgtaatt tcctacctga acatatcgag caacttgaaa aagaaacagg
     3301 tgtgttacca gcaattaacc aaattgagct acatccttat tttaaccaaa aagagatgat
     3361 tgcctatcat gaagagaaag gcattttgac acaagcgtgg agcccattag gtcgagacaa
     3421 tggtgtgatg gaagaacctg cattaaaaca actttcatct aaatatgaca aaacagtcgc
     3481 tcaagtcatt ttaagatggc atattcaaaa tggtgtcatg ccgataccga aagcaacatc
     3541 atcaaaacgc caacttgaga actttgacat tttcgacttt catatcacag atgaagattt
     3601 acaagcgatt gaccaattga ctcgtgctga tggtcgacgc aagaaccaag atcctgctgt
     3661 ttacgaagaa ttttaataag atgtttaggc ctatataaaa tgtggaataa gtatattgaa
     3721 atattcataa ggaggcatta taaatggcaa atcaagagaa taaattcgaa caagctaaag
     3781 gaaacttcaa agaaacagtt ggtaatgtaa cagataacca atcattagaa aatgaaggta
     3841 agcaagataa agcttctggt aaagctaaag aagtcgttga aaatgtaaaa gacaaagcgc
     3901 aagacatgat tgataagttt aagaaataat ttttagttaa aaattatgat gaaagaataa
     3961 gtgtaataga taaaaaaaca aggtaaagaa tatttaaaca aagcaaaaga cgcttatgat
     4021 aagtatcaaa atagtcaaca aagtgacgcc aaagatatta aagatggcgg tagtttagtt
     4081 gataaagcga aagatgcttt ggataaattt actggcggta ataaataatc agattgataa
     4141 tagcggttgt aggtatgtgc ctgcagccgt tttttatatt ttggggtgtt tattgaataa
     4201 caagattgaa catgtgaagt tcaaggaatg tagctttttt cacaactgat tcggcactga
     4261 gatgaggtat gacgctctat gatttcgttt attaggcaaa ataaacttgc caacgcttct
     4321 catcaaacat gaaacgttgg caacttcaat ggcgtgtact aaaatagatg attcctgtga
     4381 atatcgtgac gctttattgc ttttgattac gttcgtcaat caatgcttta aagtagcgat
     4441 atgagcgatg ttgcaagtcg gtgtcataaa tataactgat ggccataatc tcatcaatcc
     4501 acccgtgttt ttgtaaaaag gcgtctaatt gttgattgac tgatgcttta ttgccaatca
     4561 gtgaatgctg taaacgtgct tcagccattg cgatttctct cggtgacaac agttgactca
     4621 aatcttcagt aggtggctgc attttattca ttctacctct taatatactt gcaaagattt
     4681 gcgattgggt tgtagccaaa tactgcgctt cttcatcagt gtctgccata atgacattta
     4741 aacaaacgat aatatacggc gcttgtaaat attcggatgg ttcaaagaga tctttataaa
     4801 ttgcaatggc ttcttgcatt tgctgtggtg cgaaatgacc tgcaaaaaca taaggtaatc
     4861 cttttctagc agctaaatgt gcagagtccg ttgaagagcc gagaatataa atcggtacgt
     4921 ttttgtcaac tgcaggaatg gctttgacat agccttgtat cgtatcagga ccaaaatatt
     4981 gcagtaactg ttgcacttca tcaggaaatt gatacacccc ttgatgttga tcacgacgga
     5041 gcgcacttgc ggttgccatg tctgtcccag gtgcacgtcc taatcctagg tctacacgat
     5101 ctccatataa cgtgtttaac gtaccaaatt gttcagctac gacaagcggg gcatgattcg
     5161 gtaacataat acctccagag ccaattctca tttcgttcgt atggtgtaat gcatgttgaa
     5221 taagcaatgc agttgctgaa cttacaaggt ttggtgcgtt gtgatgttct gcaatccata
     5281 atcgctcgta ttgattttgt tctaaatgct gagcgagtgc taccatttgt gagattgctt
     5341 ctttttcgtt atttccttct ctaatcggaa caagatttaa tgctgagtat ttcattgatt
     5401 ttggcatcat aatacactcc tttttatagc gctagtataa cattagtttc atcatcaact
     5461 cacaaaaact gccttttggc atacattgaa ttctgaaggt gtaaagatta caatagaaat
     5521 gactataacc gtaaaaaaca cgtaatcact gtactagaat ttttagaaag caagtgctaa
     5581 aataggaaca ttgattataa gaaagggctg acgtaatgat gggtgtttat gcagattatg
     5641 cggcaacaac cccggtaaaa cctgaagttg ctgaaaaaat gatggctgtc tatcaaacac
     5701 attttggtaa tccttcttca atacattctc aagggcgaga tgcgagaaga ttactagatg
     5761 aatcaagaag aacggtcgca caatatttga atgcgaaacc gaatgaagta atttttacaa
     5821 gtggggcaac cgagtctaac aacactgtca ttaaaggtat tgcttatgca aatgaggcaa
     5881 aagggaagca tctcattacg acaaagattg aacatcactc tgtactgcac gttttcgaat
     5941 acctcgagca acaaggattt gaagtgacct atttagacgt tgatgctgga ggaatcattg
     6001 atttagaaca gttaaagcaa agtatacgtg aagatacgac gctcgtgtca atcatgttcg
     6061 taaataatga agtcggtaca gttcagcatg tgtatgacat tcaagatgta ttagcagacc
     6121 atgacgttta ctttcatatg gatgccgttc aagcagttgg tcatttgcct atcgatgtgg
     6181 aggatttagc tgttgatgct ttaagtatga cggcgcacaa attcggtggt cctaaaggca
     6241 tcggcgttct ttatgttaaa acgggcacac gcatcacata tccgcaatta ggtggcgaac
     6301 aagaaacgaa acgtcgtgct ggaactgaaa acgtacctca aattgtagga cttgcgactg
     6361 cgttaacttt agctgaagct tcacgcgatg ataataacgt gcatttgaca cgattaaaag
     6421 aacaattgat tgtcggttta caacaacgtt cgattccttt tgaatacaat ggttcaatga
     6481 ttgatacgac aaatcatatt attaatttgc atttcccatt tgttgatgta gaaacattgt
     6541 taacgttact cgatttagca ggcgtatatg tgtcatcagg atccgcttgt acggctggtt
     6601 caacgattcc ttcccatgtt ttgttagcga tgtatggtga acaatcatca cgtgtggatc
     6661 attcgattcg gattagttta aatgaacaag tcactgaagc agatattaga gaaattgtca
     6721 ttgaaataca gaaaatatat ttaaaattta aggaggaaca atagtgacca atcaaaacac
     6781 acgtgtcgta gttggcatgt caggtggtgt agatagttcc gtaactgccc acttattgaa
     6841 agaacaaggc tacgatgtga tcggtatatt tatgaaaaac tgggatgata cggatgagtt
     6901 tggcgtatgt acagcgacag aagattacaa tgatgtgatt gctgtatgta accaaatcgg
     6961 tattccatat tatgcagtca attttgagaa agagtattgg gataaagtgt ttacgtactt
     7021 tttagatgaa tacaaaaaag ggcgtacacc gaacccagat gtcatgtgca ataaagaaat
     7081 caaattcaaa gcctttttag accatgcgtt aaaactcggc gcggattatg tggcgactgg
     7141 ccattatgca cgtgtacgtc atcatgaaga tggttcagta gaaatgttac gtggcgtcga
     7201 taataataaa gatcaaacgt atttcttaaa tcaattgact gaagcacaat tgagtaaagt
     7261 gatgtttcct attggtgata tcgataagca aaaagtccgt gaaatcgcat tggaacaaga
     7321 tttagccaca gcgaagaaaa aagattcaac agggatttgt ttcatcggtg aacgtaattt
     7381 taaaacattt ttatcacaat atttacctgc gcaaccaggt gaaatgcgta cacttaatgg
     7441 tgaattaaaa ggtcaacatg gcgggcttat gtattatacg attggccaaa gacatggtct
     7501 cggtattggt ggcgatgggg atccttggtt tgttgtaggt aaaaacttag aagacaacat
     7561 tttatacgtt gaacaaggtt tccatcacga tgcattatac agtgactatt taatcgcttc
     7621 tgatgtatca tttgtgaatg caacagactt aacagagccg ttgaaatgta cggctaaatt
     7681 tagataccgt caaaaagatg tcggtgtcac tgtgactgca catggtgacg atgcagttaa
     7741 agtgactttt gacgagccag ttcgcgccat tacacctggc caagctgtcg tgttttacga
     7801 tggtgatgta tgtttaggcg gtgcaacgat tgatgacgtc tataaaaaag acggacaact
     7861 agattatgtc gtataggaaa aggtgattca aatggaactt gaacagattc atcaactcat
     7921 tcaacaagga caattcgaac gtgcattaca agaaagtttt aacaacatag aagcacatcc
     7981 tgatgaagtc gaaaattata tcaattcagg tgtgttatta gcagaagcag gtgaaattga
     8041 aaaagctgaa cgtttttttc aacgtgcact gacgattaaa ccagataatg gtgtgattta
     8101 ttataatttg gcgaatgttt actttaatga aggtcgtttt caagaagcgg tcaaattata
     8161 tcaagaagcc ttgtcgcatc atgtcgatca caaagatacc tattatatgt tagggctgtc
     8221 cttgatccag ctcgacgcta agaagcaagc cctaccttat ataatgcgtg cagcagagtt
     8281 agatgctcaa tttgaagatc ttgaagtcca atttcaattt gcgttgctta tgtgtgagct
     8341 ggaaatgttt gatcaagcga taccggtttt gaatcaaata ttagaacgcg atccacaaca
     8401 tgcagacgca caatacaact taacattagc gctttatatg ctcaacgaaa atatcgatgc
     8461 ggccattcaa ggctttgaac gtgcagtaca aatggattcg caacatttac tcagtcagca
     8521 cgcactgaaa acatttcgat taataaaagc cgaagaggag gcgtaaccat ggaaaatcca
     8581 acactgtttg accatacatt tattaaaggc accgtagaga tgattttgtt tcagaatacg
     8641 gacaatcatt acacagtgct taaagttgaa atagaagaaa caaatggtga ctttgatgat
     8701 atggcaacag tggttggata ttttccgaat atggtagaag atgagtcgta cacttttaaa
     8761 ggccaaatcg tgcaacatgc aagatatggt cagcaattaa aagctgagac gtttcaaaaa
     8821 gaaattcctc ataccaaaga tgctgttatt gcatatttat ctagtgaatt gtttaaaggg
     8881 attggtaaaa aaacagcaga atccattgtc aatacattag gtgaaaatgc gattcatgac
     8941 attttgaaag atgaatctgt catcgaacaa gtgcctaaac tgtctaaagc gaaacaacaa
     9001 caaattgtcg agcagattta tgccaaccaa gaaagtgaac aagtgatgat tcgattgaac
     9061 gaacttggtt ttggttcaaa gcttgcgatg gacatttaca agttttataa aagtgataca
     9121 ttaacggtac tcgaccaaaa tccgtatcaa cttgtttatg acattaaagg ggttggtttt
     9181 aacaaagcgg accaactggc acaacagctc ggtattcatc cagagcaccc cgaccgttta
     9241 aaagccggct tactttattt agttgaagat acgtgtatta aacaaggtca tacgtacctc
     9301 ccacaagaag cgttaatcaa tgaaacgatt caactgctgt ctcagggcaa agattcaagt
     9361 gtcgactatg acaccatgac gcaaatttta gctgaattag ttgaagaaaa acgactagtg
     9421 aatcaagagg aaatggtggc catcccaagt ctttattatt cggaaattaa aagcacacaa
     9481 aatttatata aaatatttgc caatcgagag catttaacta catttgatgc ttcagatatt
     9541 caattacata ttggggaaat tgaagaggtc aatgaagtac attatgcccc ttctcaaaaa
     9601 gaggctttag aatatgcgat tcaacataaa gtcatgcttc tcacgggtgg accaggtaca
     9661 gggaaaacaa ctgtcattaa aggaattgtc cagttatatg cagaaattca cggcatctca
     9721 ttagattacg atgactattc agatgaagat gattatccgg tcgtattagc tgcaccaacc
     9781 ggaagagcgt ctaaacgttt acatgaagcg acagggttag aagcaatgac gattcaccgc
     9841 ttaattggtt ggaatcaaga tacgaagccg caagacaaat tagacaatga aattcatgcg
     9901 aaattgatta ttattgatga aatgtctatg gtcgacactt ggctattcca tcaatttatg
     9961 gatgcagtcc ctatagatgc ccaagtcgta ttagtcggtg atgaagacca gcttccatca
    10021 gttggccctg gacaagtttt taaagatctc attgatgcaa atgtattacc gcgcatcaat
    10081 ttaactgaag tttatcgcca acaggacggc tccagtatta ttgatttagc gcatcgtatg
    10141 aaactcggtg aaaaagttga tattacccaa cgttttcacg atcgttcgtt tattccatgt
    10201 caaaccgatc aaattccaca agtcgtagaa aaagtcgtca acaatgccgt gcaaaaaggg
    10261 tatacaatgg cagatattca agtgctcgcg ccgatgtatc gtggtaatgc agggattaaa
    10321 aagctcaatc aaattttaca aggcattttg aaccctttgt cagacgaatc gcaacgtgag
    10381 attgaatttg gtgatgttct atttcgtaaa ggcgacaaag tattgcaact gattaatcgt
    10441 ccaaacgata atgtgtttaa tggtgatatt ggtgttattg tcggtatttt ttgggcaaag
    10501 gaaaatgctt taaataaaga tgtcgtggtc gttgattatg atgggaacga aattacttat
    10561 ttacgctctg atttgacgga attgacacat gcatattgta cttcgattca taaagcgcaa
    10621 ggttcagagt ttccaattgt catcatgccg attgttaagc agtattttag aatgttacaa
    10681 aaaccgattt tatatactgg attaacgcgt gccaaacaat cgctcgtttt tcttggtgat
    10741 gcagatgctt ttaatatcgg gttagcgact gcgggtcaaa cgcgattaac acaattacaa
    10801 acgttcttaa tgcaatattt tactccggaa gatactgatg ataaaacaga tactgataca
    10861 gcttcggctg agtttatttt aactgaagcg actatgttta aaatccatcc gatgattaat
    10921 atgggtgaag tgacacctta tgacttttta gaaattgaca aagtttaacc cttttttata
    10981 taatcaaagt taagttcaag tgcatagccg agtaaatgag tatccactat acagagacgt
    11041 acaagttgct gagaatgtac gagtgtgatt cattgaacgc tactatgtat gagcacgtat
    11101 atgataatga gtgatggcaa tatagccata actagggtgg taccgcgaaa cattcgtccc
    11161 tttttgagag acgggtgttt ttttgtatct atttgaatca aggagttgta aagatgaaaa
    11221 aattaaaagc aagtgatatt cgtcaaatgt atattgactt ttttgttgag aaaggccata
    11281 tggttgaacc ttcagcgcca ttagttccta ttgatgatga ttcattacta tggattaact
    11341 caggggttgc gacattaaaa aaatattttg atggtcgtga aattccgaaa aaaccacgta
    11401 tcgtcaacgc acaaaaatcg attcgtacga acgatattga aaatgtaggt ttcactgcac
    11461 gtcaccatac gttctttgaa atgttgggta atttctcgat tggcgattac tttaaacgtg
    11521 aagcgattga atttgcatgg gaatttttaa caagtgaacg ctggatggcg atggaacctg
    11581 aaaaactgta tgtaacgatt caccctgaag atactgaggc atacgattta tggacaaatg
    11641 tggttggttt gactgaagac cgcatcattc gtattgaagg gaacttttgg gatattggtg
    11701 aaggaccatc tggacccaat acagaaattt tctatgaccg tggtgaagcg tatggacaag
    11761 atgattccgc tgaagaaatg tatccaggtg gtgaaaacga acgttattta gaagtatgga
    11821 accttgtatt tagtgagttt aatcataata aagatcatac gtatacgcca ttaccaagta
    11881 aaaatattga tacgggcatg ggattagaac gcatgacttc tatttcccaa gacgtacgta
    11941 caaactatga aacagactta ttcatgccga ttatcggtca agttgaagct atttcaggca
    12001 aaaaatattt agtcgataaa gataacgatg tcgcatttaa agtcattgct gatcatattc
    12061 gtacgattgc ttttgctatt tctgatggtg cattacctgc gaatgagggc cgaggctatg
    12121 ttttacgtcg tttactacgt cgtgcggtca gatttagcca aacgttagaa atcaacgaac
    12181 catttatgta tcaattggta gaaattgtgg cagacataat ggaaccttac tatccaaacg
    12241 taaaagaaaa aggagatttt attgcacgtg tcattaaatc tgaagaagaa cgcttccatg
    12301 aaacgctaga ggaaggtcta gcgattttaa atgatttaat caaacaagct aaatcttcaa
    12361 acgagaccat tgcgggagaa gatgcattta aattatatga cacatatggt ttcccaattg
    12421 agttaactga agaaattacg cttaatgaag gattagcgat tgatatggat tcatttaacg
    12481 atcatatgga agcacaacgt gatcgcgcac gtaaagcgag acaaagcagt caatcgatgc
    12541 aagttcaaag cgaagtgtta aaagagatta acacagtgag caagttttta ggttacgaag
    12601 cgtttgaaac gcatgctaaa attacagaca tcgtacgtga cggtgaacgc gtgacgatgg
    12661 ctgatgcagg tgagacgatt cattttattt tggatcaaac accattctat gcagtaagcg
    12721 gcggtcaagt ggccgacaaa ggaacagtga gcaatgcgca atttgaaatt caagtgacag
    12781 aagtcattaa agcgccaaat ggccaacatt tacacacagg tgtcgttcaa tttggtgaag
    12841 tccgtgaagc agccgaagtc acagcaacga tcgatcgtca agcaagaacg gcaattatga
    12901 aaaaccatag tgccactcac ttattacacg cggcattgaa aaaagtttta ggtgagcatg
    12961 tcaatcaagc tggttcatta gtcgatagtg accgtctccg ttttgacttc tcgcatatcg
    13021 caccaatgac agccaaagaa atgaaacaag tggaacaaat ggtcaacgaa gaaatttgga
    13081 acagcattcc ggttgaaatt caagaaatga acattgagga tgcgaaagct aaaggtgcaa
    13141 tggcgttatt tggtgaaaaa tatggcgaca tcgtacgtgt tgtaaatatg caaccatttt
    13201 caatcgagct ttgtggtggg acacatgtgc gcaacacatc agaaattggc ttatttaaaa
    13261 tcacaagtga atcaggtaca ggtgcgggtg tccgtcgtat cgaagcggtg actggacaaa
    13321 atgcattcct ttatttagaa cactacttag atcaattcaa tgcgcttaag caacaagtga
    13381 aagcaaaatc ggatgcacaa gtcattgaaa aagttgaaca gctgcaatat aatgaaaaaa
    13441 cattaaagca aacgattgaa gacaaaaaca aagccttaaa tgaattgaaa atgggcaata
    13501 ttaaagatca agtcgaaacg attaacgaca tgtctgtact cattactgaa gttgaggttg
    13561 acaatgcaaa agcgatgcgt acaacgatgg atgactttaa atcaaaatta caagatagta
    13621 ttatcgtttt agcaagtgat gtcggtggta aagtttcatt aattgcaagt gtaccaaaag
    13681 ctttgacgga tcgtgtgaaa gctggagaca ttattaaaaa tatggcacca gtcgttggtg
    13741 gaaaaggtgg cggccgtcct gatatggcgc aaggtggcgg tactgaacct ggcaagataa
    13801 cagaagcatt acaat
//
LOCUS       DANHOL010000062        13111 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.062, whole genome shotgun sequence.
ACCESSION   DANHOL010000062 DANHOL010000000
VERSION     DANHOL010000062.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 13111)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13111)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13111
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.062"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            221..1705
                     /locus_tag="PTC08_001303"
     CDS             221..1705
                     /locus_tag="PTC08_001303"
                     /EC_number="6.3.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011276211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-
                     lysine ligase"
                     /protein_id="HDK5682816.1"
                     /translation="MNAQQLFDHILIKQVIGRLDIEVNDITTDSRQAKAGSIFVASKG
                     YTVDSHRFAQDVVEQGCQIVVVNRALELQGDVTQVIVPDTLRVASHLMHHLYGFPSKQ
                     LTTIGVTGTNGKTSIATMIHHIYRKLGKGSAYLGTNGFQINETVTKGVNTTPETVVLT
                     KKIHEAVEAGAEAMALEVSSHGLSLGRLSGVEFDVAIFSNLTQDHLDFHGTMEAYGHA
                     KSLLFSQLGQDLSRDKYVIINADDPFSTYLKSVTPYESLTYGIEQEAQFMATNIHESL
                     QGVTFDFVTPFGTYPVRSPYIGRFNIANLMAAMLGVWVKGAPLETVTKVVADLEPVEG
                     RLEVLDPSLPIDLIIDYAHTADGMAKLIDAVEPFVKQKLIFLVGMAGERDLTKTPEMG
                     RVASRADYVIFTPDNPANDDPKMLTAELAKGATHDRYVEFTDRAEGIRHAIEVAEPGD
                     TVVLASKGREPYQIMPGHVKVPHRDDLIGLEAAYQKFGGGPNEN"
     gene            1695..1934
                     /locus_tag="PTC08_001304"
     CDS             1695..1934
                     /locus_tag="PTC08_001304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YueH family protein"
                     /protein_id="HDK5682817.1"
                     /translation="MKIRESHSENYSAKVWLYHNQKEHYIVVSIPDLYWSIQIEDTLY
                     GEELTEHLFVHLFNVINEEEAQILALRITRWLQEV"
     gene            1955..3517
                     /locus_tag="PTC08_001305"
     CDS             1955..3517
                     /locus_tag="PTC08_001305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 3"
                     /protein_id="HDK5682818.1"
                     /translation="MSIKKEVESRKTFAIISHPDAGKTTLTEKLLYFSGAIREAGTVK
                     GKKTGKFATSDWMKVEQERGISVTSSVMQFDYDDFKINILDTPGHEDFSEDTYRTLMA
                     VDSAVMVIDCAKGIEPQTLKLFKVCKMRGIPIFTFINKLDRVGKEPFDLLDEIESTLG
                     IETYPMNWPIGMGQNFFGIIDRKERTIEPFRDEENTLHINEEYELEEAHDIANDSIFT
                     QAIEELMLVDEAGESFDNDALMRGDLTPVFFGSALANFGVQNFLNAYVDHAPMPHARQ
                     TDEEVEVSPFDTDFSGFIFKIQANMDPKHRDRIAFMRVVSGAFERGMDVTLQRTGKKQ
                     KITRSTSFMADDKSTVNHAVAGDIIGLYDTGNYQIGDTLVAGNQKFHFKALPQFTPEI
                     FMKVSPKNVMKQKHFHKGIEQLVQEGAIQYYKSPHTNQIILGAVGQLQFEVFEHRMNN
                     EYNVDVVMEPVGKKIARWIENEEDVQDKMSTSRSILVNDRYDNKVFLFENDFATRWFE
                     EKFPEIKLYSLL"
     gene            3980..4789
                     /locus_tag="PTC08_001306"
     CDS             3980..4789
                     /locus_tag="PTC08_001306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HDK5682819.1"
                     /translation="MLMDPSLLLSYGWVILVLVFLEGLLAADNAIVMAVMVKHLPPEQ
                     RKKALFYGLLGAFVFRFIALFLISILANFWWIQAIGAAYLIYMSAKNLYDFFKHKGGE
                     HEQPDNDDHHYDESGVEKKVSAKEFWGTVLKVEVADIAFAIDSMLAALAIAVTLPTIG
                     VHFGGMDAGQFAVMFIGGLIGVILMRFAATFFVGLLNKYPGLEGAAFAIVGWVGIKLV
                     VLVLAHEDIGMIPHDFPHSTLWQIIFWTVMIGLVLIGWFTSVVRNKKHDAS"
     gene            5100..6752
                     /locus_tag="PTC08_001307"
     CDS             5100..6752
                     /locus_tag="PTC08_001307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease"
                     /protein_id="HDK5682820.1"
                     /translation="MERDQKHVIPRQHYKRKRREYFHNEEREERLKAEEKENALKAEK
                     EKKQAKNNEERVKDNLRKARIEKLTHDDGDKNQQPSEITAEQKSESARPLEETSSVTI
                     NGSEAKEPARTGAVAETTHQLNKSPHETSEATAKTEDEQGHTEDNHQTEASKHQYTTK
                     RDWTEKVTQFISREWAKILIVLAAILVLLLLFAIFNNVNKSDNANMKQALETQQKEKG
                     TNKKVTQTMANANTAVKSVVSIENNSQPTPDAVQDSDAQAQVEKESGSGVVYKKVGDT
                     LYILTNAHVVGDRKEHELTFGNKQTAKAKVIGKYKMADIAVMTMKAPKGDTLKPLKHG
                     DSSAVVLGEPVLVVGNPLSLDFQNTVGEGIVSGLNRDVPVDLNQDDKYDTLLSTFQVD
                     APINPGDSGGAVVDQEGHLIGIASLKINMPSVQNMGFAIPVNSALAIAQKIEKEGDIQ
                     QPKTDIDIHNVVDVDKATRDDYKIPQDVSTGVVVQKVNDNSPAKNSGLKKGDVIVELD
                     SKPIKDNLAYKQKLTQHIDQQKPVKLKVLRENEVKEISFKLK"
     gene            6769..8127
                     /locus_tag="PTC08_001308"
     CDS             6769..8127
                     /locus_tag="PTC08_001308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrkH family potassium uptake protein"
                     /protein_id="HDK5682821.1"
                     /translation="MSIVKLLLKKSSPQQGIVLYYLVAIVGAFLLLNLPGVHKPGVKV
                     APIDTLFVAVSGVSVTGLTPVNISETYSAFGYIVLLVILNIGGIGVMAIGTLLWVVLG
                     KHIGIRERQLIMLDNNREAMSGTVKLILDIVRTILVIELVGATLLAFYFYQDIHDLKE
                     AILQGVFVSISATTNGGLDITGDSLIPYANDYFVQTIVMFLIVLGSIGFPVLLEIKAY
                     IKNRIPNFRFSLFTKVTTVTYLLILIVGMLGILLIEAHGVFANESWHKTLFYAMFQSV
                     STRSAGLQTFDVSQFSDATNLLMGGLMFIGSSPSSVGGGIRTTTFAIIILFVINYKPN
                     AEKSSIKVFNREIHNQDIQRSFAVFCIAIVMTFVGTFIIMLNEGHHIDFIKIYFEIMS
                     AFGTCGLSTGITSELGSVSKVVLMILMFIGRVGLISFIIMMSGNREPAKYHFPKERIQ
                     IG"
     gene            complement(8714..9856)
                     /gene="dltD"
                     /locus_tag="PTC08_001309"
     CDS             complement(8714..9856)
                     /gene="dltD"
                     /locus_tag="PTC08_001309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-lipoteichoic acid biosynthesis protein
                     DltD"
                     /protein_id="HDK5682822.1"
                     /translation="MKLKQPYIIAFLASILLFGIFIILPAKWFVPPHIANQLPKYQVS
                     TDSDMLKGQYVQEAMIKDPHYYPVYGSSELNKEDPFQPAILLKGHTKNLFYVGTGGST
                     DLIQLMTLGAQYDHLKNKKMTVIISPQWFTRHGLTEENYQGRASQLQINSIFNNPNIS
                     NDIKTRLAKRLLHFKDNKQNDFLKHFAKSHEADGHFLNPLYANHLAKMEALKSYLPFH
                     HQGKLPRLFDKSQKQPLNWKALDKEAHQYGAHHSQSNPYQIKDAYWKKLKHKKSVSRD
                     HEFRLKSVEYDDLSLLVDTLNAAGADVQYVLIPVNGKWYDHIDLPRDRRTAVNEKIVK
                     TIEDHHGHVVDLSHHDYEPYYMSDAVHIGWRGWVEVTQHIKHHIDQ"
     gene            complement(9853..10089)
                     /gene="dltC"
                     /locus_tag="PTC08_001310"
     CDS             complement(9853..10089)
                     /gene="dltC"
                     /locus_tag="PTC08_001310"
                     /EC_number="6.1.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--poly(phosphoribitol) ligase subunit
                     DltC"
                     /protein_id="HDK5682823.1"
                     /translation="MEFNEKVLDIIAEVADDDIVKSNPDIHIFDEGIMDSMQSVQLLV
                     AFQDELDIEVPIMDFNREEWGTPNQIINELAKLR"
     gene            complement(10102..11319)
                     /gene="dltB"
                     /locus_tag="PTC08_001311"
     CDS             complement(10102..11319)
                     /gene="dltB"
                     /locus_tag="PTC08_001311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000613541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-lipoteichoic acid biosynthesis protein
                     DltB"
                     /protein_id="HDK5682824.1"
                     /translation="MIPYSSFHFFAIALIVLLPVIILGLLGKRSKAYNLISTLIMIVV
                     IFADDQHNFFGIKYLSYHLLSLVLYIIWQALIIKGFERLRANKRSTPLYITTMILSIL
                     PLFMVKLLQSSWLGSGQLHLHSSKIVELFGFLGISYIMFKSVQLIMEIHDGTLKQTVD
                     LKKLVQFITFFPTISSGPIDRYRRFVKDYDKEIAMDKYSQLLGKAIHYIMIGLLYKYI
                     IAHFVQQYFVTPYTGHLESFGDYVIYMYGYSFYLFFDFAGYSLFAIALSYLYGIETPI
                     NFNQPFRAKNIKDFWNRWHMSLSFWFRDCIYMRFIFFMTKKKYIKSNFHVSNLAFLLN
                     FGIMGLWHGFEWFYVAYGLYHALLFFLYNHYEKWRKKRFGKWDHPVINALSIVITFHC
                     VAFGFLIFSGQLI"
     gene            complement(11316..12770)
                     /gene="dltA"
                     /locus_tag="PTC08_001312"
     CDS             complement(11316..12770)
                     /gene="dltA"
                     /locus_tag="PTC08_001312"
                     /EC_number="6.1.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011276287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--poly(phosphoribitol) ligase subunit
                     DltA"
                     /protein_id="HDK5682825.1"
                     /translation="MKDVLTMISQHSQTQPDRVAVQHQSESLTYLELESYSSRLASQL
                     LTSDNPVIVYGHMSPFMVVGMIGALKAGCGYVPIDQSIPTNRIQHIIEKVSPQFLINT
                     TDTPLNYEGVTEITIQGIQSFETVSSLPLMQNDGIAYTIFTSGSTGLPKGVKIYYESL
                     VEFANWVDLLNQYHTKDVWLNQAPFSFDLSVMAIYPCLISGGTLLLVNKEMIAAPKKL
                     YELFQNEKINVWVSTPSFMEICLMLPNVNEAGMPHLRTFLFCGEVLGHHTAQTLLNKF
                     PQSYLYNTYGPTEATVAITSIRVTQSVLDSHKYVPVGLPRKGTTLSVTEEGELIITGN
                     SVSAGYLKDPEKTEKAFFKDGEQRAYYSGDKAVFEDGLWFIKGRIDNQIKYNGYRMEL
                     EEIEAKMNALPFVNTSLVVPIYKKDKIAYLKGVVKLNSEDIDPADVPKEMKQRLKAEL
                     PDYMIPKKIEIAEEMPLTNNGKLDRKRINEVYQS"
     gene            complement(12790..12918)
                     /locus_tag="PTC08_001313"
     CDS             complement(12790..12918)
                     /locus_tag="PTC08_001313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="teichoic acid D-Ala incorporation-associated
                     protein DltX"
                     /protein_id="HDK5682826.1"
                     /translation="MKLNQLPLKTVALTLLYFAIMLTLYFIYGNGDTQNTFIYNDF"
BASE COUNT         4212 a         2258 c         2734 g         3907 t
ORIGIN      
        1 ttgttttttg atttcataaa acttcctatc atggtgtttc ctgtaaaaac gcgaagccat
       61 gaagataatc aaaaaccaca aagctatagg gaaggcaagt ttgacaaaaa tatttgcatc
      121 aatggcatca aaaattttct atgttccaac tccattccta ataggatttc aagcaaaaaa
      181 gtgtataata aatgagtgta tatataaagg agagatgtct gtgaatgcac aacaattatt
      241 tgatcatatt ttaattaaac aggtcatagg acgtttagat attgaagtga atgatattac
      301 gacagattcg cgtcaagcaa aggctggcag tatctttgtc gcatcaaaag gctataccgt
      361 cgatagtcat cgttttgcgc aagacgtcgt agaacaagga tgtcagattg ttgttgtgaa
      421 tcgtgcgctt gaattacaag gtgacgtcac acaagtgata gtaccagata cattacgtgt
      481 cgcgagtcac ttaatgcatc atttgtatgg gtttccaagc aagcagctga cgacgattgg
      541 tgtcacaggg acaaatggta agacatcgat tgcgacgatg attcatcaca tttatcgaaa
      601 gttaggcaaa ggtagtgcgt atttaggtac gaatggcttt caaattaacg aaacagtgac
      661 aaaaggtgtg aacacaacac cagaaaccgt tgtcttaacg aagaagattc atgaagcggt
      721 agaagcaggg gctgaagcga tggcattaga agtgtcctcg catggactta gtttaggtcg
      781 cttgagtggc gttgaatttg atgttgcgat attttcaaat ttaacacaag atcatctcga
      841 ttttcatggc acaatggagg cgtacggtca tgcgaaatcg ttgctattta gtcaactcgg
      901 tcaagatttg agtcgtgata aatacgtcat tattaacgca gatgacccat tttctactta
      961 tttaaaatca gttacgccat acgaaagctt aacatatggc attgaacaag aggcgcagtt
     1021 tatggcaacc aatattcatg aatctttaca aggcgtgacg tttgattttg taacaccttt
     1081 tggtacatat ccagtgcgtt cgccgtacat cggtcgtttc aacattgcga acttaatggc
     1141 agcaatgtta ggtgtatggg tgaaaggtgc accactagaa acggtcacaa aagtcgtcgc
     1201 tgatttagag ccagtagaag ggcgtttaga agtactcgat ccatcattgc caatcgattt
     1261 aattattgat tatgcgcata cagcagatgg tatggcgaaa ttgattgatg cagttgaacc
     1321 gttcgttaaa caaaaactta ttttcctagt tggcatggct ggagaacgcg atttaacgaa
     1381 aacgcctgaa atgggacgtg tcgcttcacg tgcagattat gtcattttca caccagataa
     1441 tccagcaaat gatgatccga aaatgttaac ggctgaactt gcgaaaggcg cgacacatga
     1501 tcgttatgtg gagtttacag accgtgcaga aggtattcgc catgcgatag aagtggcaga
     1561 accaggggat actgttgtac ttgcatctaa aggacgtgaa ccgtatcaaa ttatgccagg
     1621 tcacgtcaaa gtgcctcatc gtgatgattt aatcgggtta gaagcggcgt atcaaaaatt
     1681 cggtggaggt ccaaatgaaa attagggaaa gtcatagtga aaattattca gctaaggttt
     1741 ggttatatca caatcaaaaa gaacattata ttgtcgtatc gattccagat ttatactggt
     1801 cgattcaaat agaagataca ctatatggtg aagaactaac agaacattta tttgtgcatt
     1861 tatttaatgt gataaatgag gaagaagcgc aaattttagc attacgtatc acaagatggt
     1921 tacaagaagt ttgatgaatt aaaggagacg tacaatgagt attaaaaaag aagtagaatc
     1981 acgcaagacg tttgcgatta tttctcaccc tgatgcgggg aaaacgacat taactgaaaa
     2041 attgctgtac tttagtggtg cgattcgtga agcagggaca gtcaaaggga agaaaacagg
     2101 taaatttgcg acaagtgact ggatgaaagt tgaacaagaa cgtgggattt cagttacaag
     2161 ttctgtcatg cagtttgatt acgatgattt taaaattaac attttagata cgccagggca
     2221 tgaagatttc tctgaagata cgtaccgaac gttaatggcg gtcgatagtg cggtcatggt
     2281 tattgactgt gcaaaaggga ttgagccaca aacattaaag ttattcaaag tatgtaaaat
     2341 gcgagggatt cctattttta catttattaa taaacttgac cgtgttggaa aagaaccgtt
     2401 cgatttgtta gatgaaattg aatcaacact tggtatcgaa acgtatccga tgaactggcc
     2461 aattggtatg ggacaaaact ttttcgggat tattgaccga aaagaacgta cgattgagcc
     2521 gttccgtgat gaagaaaaca ctttgcatat taatgaagag tatgaattag aagaggcgca
     2581 tgacattgcg aatgatagta tttttacgca agcgattgaa gagttaatgc ttgtagatga
     2641 agcaggtgag tcattcgata atgatgcctt aatgcgtgga gatttaacac cagtcttttt
     2701 cggctcagca ttagcgaatt tcggagtaca aaacttcttg aatgcttatg ttgaccacgc
     2761 accgatgcca catgcacgtc aaacagatga agaggttgag gtgagtccgt tcgatacaga
     2821 tttttcaggg tttatcttta aaatccaagc gaacatggac ccgaaacacc gcgaccgtat
     2881 tgcctttatg cgtgttgtca gcggtgcgtt cgagcgtggt atggacgtga cattacaacg
     2941 aacaggtaaa aaacagaaaa tcacacgttc aacaagtttt atggccgatg acaaatcgac
     3001 agtgaatcat gctgtagcgg gtgacattat cggtttatat gatacaggaa attaccaaat
     3061 tggggataca cttgttgcag gtaaccagaa gttccatttc aaggcattgc ctcagtttac
     3121 acctgaaatt ttcatgaaag tatcgccgaa aaacgtcatg aaacagaagc acttccataa
     3181 agggattgaa cagctcgtgc aagaaggggc gattcaatat tataaatcac cacatacgaa
     3241 ccaaatcatt ttaggtgcag taggacaact ccaatttgaa gtgttcgaac atcgcatgaa
     3301 caatgaatat aatgtcgatg ttgtgatgga acctgtcggc aaaaaaatcg cgcgttggat
     3361 tgaaaatgaa gaagacgtgc aagataagat gagtacgagt cgttcaattt tagtaaatga
     3421 ccgctatgat aataaagtct ttttatttga aaatgatttt gcgacacgtt ggtttgaaga
     3481 aaaattccca gaaattaaac tgtatagctt gttataatgt attgatatac acatgatagt
     3541 gaataaacaa tgaacaaagc agacgatgtg ttggatagag gcacagtctg ctttgttcat
     3601 tgttgaagat gtcctgtaaa caataaaaga cgagatgcgt tggttatgaa tattttttaa
     3661 tttcaagata ataggctgtt attttcataa aaaattgggt ataatgttaa catcataatt
     3721 aaatacctgt gactgactat tgtcagaggg gagtaacttg attagcgtaa caaacgttaa
     3781 taacgctttg tcgtcattac gaagaaactg aatttcttcc ggtgaagcgg gcatgataaa
     3841 attgctaagt gagacctttg ctattgattt agcatgggtc tctttaatta tgtctttcac
     3901 tgagcgtggg tgttcacgcg aaacaatgaa atgatacggg gcgagcacat gcgcccatat
     3961 aaaaaattga aggagtgatc tgttaatgga tccgagtttg ttattatctt atggatgggt
     4021 catattagta cttgtatttt tagaaggact attggctgca gataatgcaa ttgttatggc
     4081 tgtgatggtg aaacatttac caccagagca acgtaaaaaa gcactatttt atggtttgtt
     4141 aggcgcattt gttttccgtt ttatcgcatt attcttaatt agtattttag cgaatttctg
     4201 gtggattcaa gcgatcggtg cggcatatct catatatatg tcagcgaaaa acttatatga
     4261 ctttttcaaa cataaaggtg gagaacacga acaacctgac aacgatgatc atcattatga
     4321 cgagtcaggt gttgagaaaa aagtgagtgc gaaagaattt tggggcactg tcctcaaagt
     4381 tgaagttgca gatattgctt ttgcgattga ctctatgtta gcagcattag cgattgctgt
     4441 aacattaccg acgatcggtg tgcatttcgg tggaatggat gcaggtcaat tcgcggtgat
     4501 gtttatcggt ggtcttatcg gtgtcatttt aatgcgtttt gctgcaacat tctttgtagg
     4561 gctactgaac aagtatcctg gtcttgaagg tgctgccttt gcgattgttg gatgggtcgg
     4621 aatcaaactt gtcgtactcg tcttagcaca tgaagatatc ggtatgatcc cacatgattt
     4681 tccacattct acattgtggc aaatcatttt ctggacagtc atgattggac ttgtactgat
     4741 cggttggttt acatcagtgg tgcgtaataa aaaacatgat gcatcttaat gaaagctgaa
     4801 taagggcgtt tgacttaggc tgggatatta cgttatcctg gcctttcttt atgttttaat
     4861 gtattaaagt aaaagcaata tcagtggtca aacaggggat agctgctttg ttgttgaatg
     4921 gtgtaaagtg aaacatgtat ttaagattcg ataaaaataa atattgtcag catgcgatgt
     4981 atcgtagaaa atacaactta aaaccattca aaaagtttgt gatatataag taaagattac
     5041 agaaatttaa gtagcgatat gtcataatag ataaaagaga tacataagga gggcgtgcaa
     5101 tggaacgaga tcaaaaacat gtgattccaa ggcaacatta taagcgcaaa cgtcgcgaat
     5161 atttccataa tgaagagcgt gaggaaagac tcaaagctga agaaaaagaa aacgcgctca
     5221 aagctgaaaa ggaaaaaaag caagcgaaaa ataatgaaga acgtgtcaaa gataatctac
     5281 gtaaagcacg tattgaaaaa ttaacgcatg acgatgggga taaaaatcaa caaccatctg
     5341 aaataacagc cgaacaaaaa tccgaaagtg cacgaccact tgaagagaca tcatcagtga
     5401 ctatcaatgg cagtgaagcg aaagaaccgg cgcgtacagg tgcagtagcc gaaacaacgc
     5461 atcagttaaa caagtcgcca catgagacat cagaggcaac cgcaaagact gaagatgaac
     5521 aaggccatac tgaagacaat caccaaacag aagcgtcgaa acatcaatat acaactaaac
     5581 gtgactggac tgaaaaagtc acacaattca tctctagaga atgggcaaaa attttaatcg
     5641 tgctcgcagc cattttagta ttgttgttat tgtttgctat ttttaataac gtcaataaaa
     5701 gcgacaatgc gaatatgaaa caagcacttg aaacgcaaca gaaagagaag ggaacgaata
     5761 aaaaagtcac acaaacgatg gcaaatgcga atacagctgt aaaatctgta gtttcgattg
     5821 aaaataatag tcagcctaca ccggatgcag ttcaagattc agatgctcag gcacaagttg
     5881 aaaaagaaag tggatcgggt gtcgtctaca agaaagtagg cgacactctt tacatactga
     5941 caaatgcgca tgtcgttgga gatcgtaaag aacatgaact cacttttggt aataagcaaa
     6001 ccgctaaggc taaagtgatt ggtaagtata aaatggctga tattgctgtg atgacgatga
     6061 aagcccctaa aggcgataca ttaaaaccac ttaaacacgg agattctagt gcagttgtat
     6121 taggagaacc ggttttagtt gtgggcaatc cgttaagtct tgacttccaa aatacagtcg
     6181 gtgaaggtat tgtatcagga ttaaatcgtg atgttccagt agacctcaat caagacgata
     6241 aatatgatac attactcagt acgttccaag ttgatgcacc gattaatcca ggcgactcag
     6301 gtggcgcggt agtcgatcaa gaaggccatt taattggtat cgcatcatta aaaattaaca
     6361 tgccaagtgt tcaaaatatg ggatttgcca ttccggttaa ctcagcgtta gccattgcgc
     6421 aaaaaatcga aaaagaaggc gacattcaac aaccgaagac ggatattgat atacataacg
     6481 tggtggatgt tgataaagcg acacgtgatg actataaaat tcctcaagat gtatcaacag
     6541 gtgttgtcgt tcaaaaagtg aacgacaaca gtccggccaa aaattctggt ttgaaaaaag
     6601 gcgatgtcat agtagaatta gatagtaaac ctatcaaaga taatttggct tataaacaaa
     6661 agttaacgca acacattgat caacaaaagc cagtgaagtt aaaggtctta cgtgaaaatg
     6721 aggtgaaaga aatctcattc aaattgaaat aactttgggg tgaatgactt gtccatagtc
     6781 aaattactac taaaaaaatc cagcccacaa caagggattg tcttgtatta ccttgtcgca
     6841 attgtcggtg cgtttttgct acttaatctg ccaggtgtcc acaaaccagg cgtaaaagtc
     6901 gcaccgattg atacgttgtt tgtagcggta tcaggtgtca gtgtaacagg attaacacca
     6961 gtcaatattt ccgaaacata ttcagcattt ggatacattg tcttgttagt catcctcaat
     7021 attggtggca ttggtgttat ggccatcggt acgctgttat gggttgtatt aggcaagcac
     7081 attggcatac gtgaacgtca actcattatg ttagataaca atagagaggc gatgagtggg
     7141 acagtcaaac tgattttaga tattgtgaga acgattttag tgattgaatt agtaggtgca
     7201 acactgctcg cattttattt ttatcaagat attcatgatt taaaagaggc gatattacag
     7261 ggtgtcttcg tttccatctc tgcgacgaca aatgggggat tagacatcac aggggactcc
     7321 ttaattccat acgcgaacga ttactttgta caaacgattg tgatgtttct tatcgttttg
     7381 ggctcaattg gctttccagt attattagaa attaaagcgt acattaaaaa taggattcca
     7441 aactttcgat tttcactgtt tactaaagtg acaacggtaa cgtatttatt gattttaatt
     7501 gttggtatgc tcgggatttt attaatcgaa gcgcatggtg tgttcgcaaa tgagtcatgg
     7561 cacaagacat tattttatgc gatgtttcaa tcggtgtcga cgcgaagtgc aggattacaa
     7621 acttttgatg tgtcacagtt ttcagatgcg acaaaccttc tgatgggcgg cctcatgttt
     7681 attggttcct caccaagttc tgtaggtggc ggtatacgaa cgacgacttt cgcgattatt
     7741 atcctgtttg tcattaacta caaaccgaac gctgaaaagt catccattaa agtatttaat
     7801 cgtgaaattc ataaccaaga tattcaacgt tcctttgcgg tattttgtat tgcgattgtg
     7861 atgacatttg taggtacatt tatcatcatg ttaaacgaag ggcatcatat tgatttcatt
     7921 aagatttatt ttgaaattat gtccgcattc ggaacgtgtg gtttatcgac ggggataact
     7981 tcagagctcg gcagtgtttc aaaagtcgtc ttgatgattt taatgtttat cggacgtgta
     8041 ggcttgattt cctttattat tatgatgagt ggtaatcgtg agccagcgaa gtatcatttt
     8101 ccgaaagagc gcattcaaat tgggtaataa taggaagggc gatgagatat agaaaatttt
     8161 tgatgcgatt gatgcaatgt tcttgttaaa cttgctctcc atatgaattg tagttttgat
     8221 tgccttcatg gcttcgcttt cctagggact ggcccttcaa ctcaattcgg cttgattgga
     8281 gcatacaaga gatggaagcc gcattggatt ttgggagcag tacagaaatc tcatgtgtaa
     8341 caaagatttc gttgtactgc ccccgcaagg ctgactagac ttctcaaaag catgtgcatt
     8401 gagaagtcag acatctactg cgttaaacgg tagccacttt taaagtaaag aagtgactgc
     8461 tagcagtatg cacgcctcct ctcaggagtc tcagccgtat aggcaatctt atatcaaata
     8521 cagggaactg agggcaagtt gatgaaatca agaaatcaat agcatcaatt ttttgtaaga
     8581 taaggttacg aagacacaat gctcaatgca acagtcaata aactgaaaag agaagtgtat
     8641 caaccaagta aagaaagcca taacctgttt tgagaattga caggttatgg ctttctttaa
     8701 tgtgttattc aatttattgg tcgatgtgat gtttaatatg ttgcgtcact tcaacccaac
     8761 cgcgccatcc aatgtggaca gcatcactca tgtaataagg ttcatagtcg tgatgtgata
     8821 aatctacaac atgaccgtgg tgatcttcaa tcgttttgac gattttctca ttgaccgctg
     8881 tacgtctgtc acgcggaaga tcaatgtggt cgtaccactt gccattaact gggattaaca
     8941 cgtactgcac atccgcacct gctgcattga gtgtatcaac taaaagtgat aaatcatcat
     9001 actcaacaga ttttaagcgg aactcgtggt cacggctcac agacttttta tgctttaatt
     9061 ttttccaata cgcatccttg atttggtaag ggttagactg actgtgatgc gccccatatt
     9121 gatgtgcttc tttgtctaat gctttccaat tcaatggttg cttttgactt ttatcgaaca
     9181 gtctcggcaa tttaccttga tgatggaacg gtaaatagct ctttaatgct tccatttttg
     9241 caagatgatt cgcataaagg gggtttaaga aatgcccatc tgcttcatgt gactttgcaa
     9301 aatgttttaa aaagtcgttc tgtttattgt ctttaaaatg caataaacgt ttggctaagc
     9361 gtgttttaat atcgttagaa atatttgggt tattgaatat actattaatt tgtaactgag
     9421 aagcacgacc ttggtaattc tcttcagtta agccatgtct cgtaaaccat tgtggtgata
     9481 tgatgaccgt cattttttta ttttttaaat ggtcatactg tgcacctaac gtcatcaact
     9541 gaattaaatc cgtggaaccc ccagtgccca cataaaagag atttttcgtg tgccccttta
     9601 acaagatggc aggttgaaat ggatcttctt tattcagctc acttgaacca taaactgggt
     9661 agtaatgagg gtccttaatc atagcttctt gtacatactg gccttttaac atatcactat
     9721 ctgttgacac ttgatactta ggaagttggt ttgcgatatg tggtggcaca aaccatttag
     9781 ccggcaatat gataaaaata ccgaataata gaatactcgc caaaaaagca atgatgtaag
     9841 gttgttttag cttcatcgta attttgccaa ttcgttaatg atttgatttg gcgtacccca
     9901 ctcttctcta ttaaagtcca taattggtac ttctatatca agttcgtctt gaaacgctac
     9961 taataattgt acagattgca ttgaatccat aatcccttca tcaaaaatat gaatatctgg
    10021 atttgatttc acaatatcat cgtcggcaac ttctgcaatt atatctaaaa ctttttcatt
    10081 aaattccata aaactctctc cttaaattaa ttgtcctgaa aagattaaaa agccaaaagc
    10141 gacacagtgg aaagtgataa cgatgctcag tgcgttaatc actggatgat cccacttacc
    10201 gaaacgcttt ttacgccatt tttcatagtg attatacaaa aagaataaca atgcgtgata
    10261 taaaccatac gccacataaa accattcaaa accgtgccaa agtcccataa taccgaagtt
    10321 aagtaagaag gcaaggttag acacatggaa gtttgattta atgtattttt tcttagtcat
    10381 aaagaaaata aaacgcatgt aaatacaatc acggaaccag aacgatagac tcatgtgcca
    10441 tctgttccag aaatctttaa tattttttgc tctaaatggt tggttaaagt tgatcggtgt
    10501 ttcaatacca tacaagtaac tcaatgcaat ggcgaataag ctgtaacctg caaagtcaaa
    10561 aaacaggtag aaactatagc catacatgta tatcacgtaa tcgccaaacg actcgaggtg
    10621 acctgtataa ggtgtcacaa aatactgttg gacgaaatgc gcaataatat atttgtaaag
    10681 taaacctatc ataatgtaat gaatcgcttt accaaggagt tgtgaatatt tgtccatagc
    10741 gatttcttta tcgtaatctt ttacaaaacg acgatagcga tcaattggac ctgaagagat
    10801 cgtagggaag aacgtaatga attgtacgag cttcttcaaa tctacagttt gctttaatgt
    10861 gccgtcatga atttccatga ttaattgaac gcttttgaac ataatgtacg aaataccgag
    10921 gaaaccgaac agttccacga tttttgagct gtgcaaatga agttgtcccg aacctagcca
    10981 tgaactttgt aggagtttga ccataaagag tggcaggata gacagaatca tcgtcgtaat
    11041 gtaaagcggt gtggagcgct tgtttgctct aagacgctcg aaccccttaa taatgagcgc
    11101 ttgccaaata atgtataaaa caaggctcaa taaatgataa cttaaatact tgataccgaa
    11161 aaagttgtgt tgatcgtctg caaatatgac gacaatcata atcaatgtac tgattaagtt
    11221 gtaagcttta gatcttttgc ctaacaaccc cagtatgatc acaggtaaca acacaatgag
    11281 cgcaatcgca aaaaagtgaa agctactgta tgggatcatg attgatatac ctcgttaatt
    11341 cgtttgcggt cgagtttacc attgttagtc aatggcatct cttcagcaat ttcgattttt
    11401 ttaggaatca tataatcagg taactcagct ttaagacgtt gcttcatttc ttttggtacg
    11461 tctgccggat cgatgtcttc tgaatttaac tttacgacac ctttcaagta ggcgattttg
    11521 tcttttttat aaattggtac aaccaatgat gtattcacaa atggcaatgc gttcatttta
    11581 gcttcaattt cttcaagttc catacgatag ccgttgtatt tgatttggtt atcaatgcgg
    11641 cctttaataa accacaagcc atcttcaaat actgctttgt cacctgaata gtatgcgcgt
    11701 tgttcaccat ctttgaaaaa ggctttctct gttttttcag ggtcttttaa ataacctgca
    11761 cttactgaat ttccagtaat aatgagctct ccttcttcag tcacacttaa tgtcgtccct
    11821 tttcttggta agcccacagg aacgtactta tggctatcaa gtactgattg cgtcactcga
    11881 atacttgtaa tcgcaacagt cgcttctgta gggccgtacg tattgtataa ataagattgt
    11941 ggaaacttgt ttaacaatgt ttgcgctgta tggtgaccta acacttcacc acagaataag
    12001 aacgtacgta aatgtggcat acctgcttca ttgacatttg gtaacattaa gcaaatttcc
    12061 ataaatgatg gggtagacac ccaaacatta attttttcgt tttggaacag ctcatacaat
    12121 tttttaggtg ctgcaatcat ttctttgttg actaacaata gtgtaccgcc tgaaatgaga
    12181 cacggataaa tcgccataac tgataaatca aatgagaatg gcgcttggtt taaccaaaca
    12241 tctttcgtgt gatattggtt caataagtcc acccaatttg cgaactctac taagctctcg
    12301 taataaattt tcacaccttt aggaagacct gttgagcccg atgtaaaaat cgtgtaagca
    12361 ataccatcat tttgcattaa aggcaatgat gatacagtct cgaatgattg aataccttga
    12421 atagtaatct ctgtcacacc ttcataatta agcggtgtat ctgtcgtgtt aattaaaaat
    12481 tgtggtgaaa ctttttctat aatatgttgg atacggtttg taggtataga ttgatcaatt
    12541 ggaacataac cgcatccggc tttaagagca ccaatcatac ccactaccat aaatggagac
    12601 atgtggccat aaactataac agggttgtcg cttgtaagca gttgtgatgc taagcgtgag
    12661 gaataacttt ctaactctag ataagttaat gattcactct gatgttgtac ggcaactcgg
    12721 tccggctggg tttgactgtg ctgtgaaatc attgttaaaa catctttcat gtgtcggctc
    12781 ctttaatgat taaaaatcgt tgtagataaa agtattttgt gtatcaccat taccgtaaat
    12841 aaaatacaaa gtcagcatga tagcaaaata aagcaatgtt aatgcgactg ttttaagagg
    12901 caattgattt aatttcataa taaattttca ccttctgcat aatatgacat gaaggttaaa
    12961 ctatctcatt taacccagat aaagttaatg taatttaata ctttatgaaa gtcaatccat
    13021 ttcttgaaaa aaaggataaa aatacaagaa aataggtcta gagttgtatg attcagtaat
    13081 aaaagtacaa tgttatattt taattaaata t
//
LOCUS       DANHOL010000063        12898 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.063, whole genome shotgun sequence.
ACCESSION   DANHOL010000063 DANHOL010000000
VERSION     DANHOL010000063.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 12898)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12898)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12898
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.063"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            63..557
                     /locus_tag="PTC08_001314"
     CDS             63..557
                     /locus_tag="PTC08_001314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002454321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682827.1"
                     /translation="MAFIILLIFFIIRLFSLAISIKHSKQLVQQGAQAYGEKNSKWLA
                     ITHILIYVGAAIETLLNHDTWSIVNTVGLIIIVLAYLVLFHVIKTLGPIWTLKLYILP
                     DHPIIRSGLYRVTKHPNYYLNIIPELIGVLLLTHATYTAILLIPYAYFLFVRIRQEEK
                     LMSL"
     gene            complement(851..1657)
                     /locus_tag="PTC08_001315"
     CDS             complement(851..1657)
                     /locus_tag="PTC08_001315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arylamine N-acetyltransferase"
                     /protein_id="HDK5682828.1"
                     /translation="MNIQKVDQKIEIDAQKLSVNRVEALNEYMYQFMHHIPFENISVQ
                     NGVEISTDLNELFEKIVEQSRGGFCYELNTFFAAYIEAKGYETQYLSATVHTPDGGRS
                     IAGAHLSLGVMMDGEMYIADVGFGGASPVKAMRVTDDGSETVEDKSGVYRALRVDDDI
                     KIQKYKDDHWETSFVASAEPRSVSDFDDKLEYNQHHPDSPFVNHLIVTKPTSTGRVTM
                     SQSNLTVTDKKGKHKTPVTSNNYRHFLKKYFDMDIVIPRLESEEKTSTEK"
     gene            complement(1854..3179)
                     /locus_tag="PTC08_001316"
     CDS             complement(1854..3179)
                     /locus_tag="PTC08_001316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-containing oxidoreductase"
                     /protein_id="HDK5682829.1"
                     /translation="MNQYDLIVVGFGKAGKTLAKFAAQQGKRVAVIEKSAEMYGGTCI
                     NIGCIPSKVLVHDGIEAASFNDAMQRKRDVVNALNSKNYHNLADEETVDVINMTASFK
                     SAHAIDLLNAQGEAVQTIEGKNIVINTGAKSVIPNIKGIDTSQRVYDSKAIMDLTQQP
                     KRLVIVGGGYIALEFASIFANFGTTVTVLERSDQILKREDAVIAQQVTEDLTQKGIQF
                     IYNAETEAIEDEADVTKVVTNQGTFEADAVLVATGRKPNTEGLNLEAAGVQLGQRGEI
                     IVNDKLQTSVDHIYAVGDVHGGLQFTYISLDDFRIVKSQLFGDGKRTLAQRGVVPYTM
                     FIDPPMARVGMTATEAREKGYDILENQVAVNTMPRHKINNDTRGLFKAVVDAKSGQVL
                     GATLYGQQSEELINIVKLAIDQQLPYAVLRDNIYTHPTMAESFNDLFNV"
     gene            complement(3180..3602)
                     /locus_tag="PTC08_001317"
     CDS             complement(3180..3602)
                     /locus_tag="PTC08_001317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rrf2 family transcriptional regulator"
                     /protein_id="HDK5682830.1"
                     /translation="MNLEFNIAVHVLTFLNQHKGEVFNSQALAENVCVNPVQLRRVMS
                     KLQQKGDVKVVRGQKGGYLATEDGLAIKLEPLFRLFNRPENHGRLFTGNPSMHCKISQ
                     KIEQVMYGHYLIEQEIIANYYQGQTIGDILNQIREVEA"
     gene            complement(3689..4351)
                     /locus_tag="PTC08_001318"
     CDS             complement(3689..4351)
                     /locus_tag="PTC08_001318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDK5682831.1"
                     /translation="MLKFQNVTKSFKDGQQVIEAVKPTTLEFSPGELIAIVGPSGSGK
                     STFLTMAGALQKPTSGDIIIGTQKITDLSQKALARVRMQQIGFILQTSNLVPFLTVKQ
                     QFQLLKKRKKDVMAQQDFDALIQQLGLESVMNQLPSEISGGQKQRVAIAKAIYTNPDI
                     ILADEPTASLDTENAMSVMEILKNESKRRNKMCMIVTHDERLTAYCDKVFEMKDGVLT
                     EK"
     gene            complement(4364..5413)
                     /locus_tag="PTC08_001319"
     CDS             complement(4364..5413)
                     /locus_tag="PTC08_001319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDK5682832.1"
                     /translation="MFLAWNEIKRNKLKFSLIIGVLILISYLLFLLSGLAKGLINMNT
                     EGINRWEADAIVLNKDANQTVQQSSFDKTLVNGKFDKQATLKQAAVIVSNGKIEENAL
                     LYGTQKDAFIVPQLTEGRTFTADNEVIADGTLKEKGFKLGDTLSLSQSDETLKIVGFT
                     ESAKYNASPVLFGNDQTIEKINPLLTGDKTNAVVVKDSHWQHQKLDSTLEAIDINTFI
                     ENLPGYQAQNLTLNFMISFLFIISATVIGVFLYVITLQKTQLFGVLKAQGFTNGDLVK
                     VVLSQTFVLALIGTVIGLILTLVTGTFLPSAVPIKFEMLTLIIFGIVLILVSLLGSLF
                     SIMTIRKIDPLKAIG"
     gene            complement(5545..6879)
                     /locus_tag="PTC08_001320"
     CDS             complement(5545..6879)
                     /locus_tag="PTC08_001320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transporter B"
                     /protein_id="HDK5682833.1"
                     /translation="MLTVTYHLVSGRVSDIPNEPHQFRVCGWKQLTPYEQQAFKRFVI
                     QQRLAVSLNQAVHCTTEETRKHVAQLQSFWRVHHQQRPRPLHTLLGWLCVFLMFAVPV
                     YVAYHFSDWLQSEFVAPWIDSVAQHPLFRPSLIHAFLFGDYGVLSLGTYSLVWALPVV
                     VLLSLSTALIEQSHLKQYIIWSIAPTMGKVGLDATDIIPLLEGFGCNAAAIVQAGHQC
                     HLCTRTRCMSLISFGTSCSYQIGATLSIFNVAHQTWLFIPYLLLVLVGGLLHNRLWYR
                     TEQQFMPIQTTLDESLTWPSLGRVLSQMGESVKMFLFQALPIFITICLIASALALTPI
                     MEMISKLFIPLLSLLHIPHELSPGILFSMIRKDGMLLFNIGDGQFIHNLSSWQVLLLV
                     FFSSTFTACSVTMTMVMRQLGWREGGKMIARQMLTSLACVILLGSITWILLL"
     gene            complement(6873..7982)
                     /locus_tag="PTC08_001321"
     CDS             complement(6873..7982)
                     /locus_tag="PTC08_001321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HDK5682834.1"
                     /translation="MKQHHRVIIIGAGAAGVGMAITMKTLHVEDVCVIEAGAIGQSFK
                     NWPKSTRTITPSFTSNGFGMPDMNAIAKDTSPAFTFNEEHLSGDTFAEYLTVVAEHYD
                     IDIRTETKVEDVQFVDGVYELNTSQGTYTADYIYVATGDFAFPNQPFDHGIHYSEVAD
                     FKALPGHTFTVIGGNESAFDAAIHLAKGGAQVSIYTSSTGFDADEADPSIRLSPYTHQ
                     RLREAVQQGAEIEMNVHYRAESIIFRNGQYEIHFDNGAIVYSTAEPIIATGFDVTKNP
                     LIQQLFTVRNGEVQLTDLDESTRYPNVFLIGATVRHADAILCYIYKFRARFAVLARTM
                     MQREGLSVDQAVIDSYRDNHMYLDDYSCCEVNCSC"
     gene            complement(8224..9819)
                     /locus_tag="PTC08_001322"
     CDS             complement(8224..9819)
                     /locus_tag="PTC08_001322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase"
                     /protein_id="HDK5682835.1"
                     /translation="MDKQTIRQQIEAGNISVGIELGSTRIKTVAIDSTTRTIATGHYE
                     WEQQLTDGYWSYDLDEVWQGIRESFRLMTREIKATYEVKLTHMASLGISGMMHGYLVF
                     DAQGQLLVPFRTWRNNTAHEAGKQLREAFQFNIPERWSIAHYYQSALKEESHVKDVAY
                     MTTLSGYVHWQLTGEKVLGIGDASGMFPIDPKTATYRKDLCEQFDTLMATNGYDQDIQ
                     RILPTVHVAGEQVGTLTADGARLLDPTGTLTSGCPMCAPEGDAGTGMVATNSIAPKTG
                     NVSAGTSIFAMIVLEQPLQAVYPEVDIVTTPAGDEVAMIHANNGSSDLNHWVHLFEEV
                     FQLMDMSYDKTTLWTRLFESALDGDDDLGKLLSYGYISGEYMTDVPRGFPLFIRQQDS
                     RFNIQNFMKNHIFTMLSTLKIGVDRLKTREQLQIDRMTGHGGVFATKQVVQRYLAAAL
                     ESPVTVMENANEGGAWGMAMLARYMLENNVTLAAFLEHVGFRDVETEMMAPQARDIES
                     FNTYVQRFEAGLAIERLLNDMLD"
     gene            complement(10035..11192)
                     /locus_tag="PTC08_001323"
     CDS             complement(10035..11192)
                     /locus_tag="PTC08_001323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HDK5682836.1"
                     /translation="MELLNNHIKDIEVPGTRQFANKVDQYPNCLDLTLGQSDFPVASY
                     VQDAMIQAIQEGRLKYTHNKGLLELRTAISEYTAERFGVTYDPETEIVVTNGASEGID
                     DILRTILNPGEEVILPGPTYLGYEPIVKLQGAEVKWIDTSHTGFVPTADAIKAAITPQ
                     TKAIMFNYPTNPTGTTLSYENIAEIVAVLKETNIFIITDEIYSENVFEGRHRSFMEFP
                     EIRKQLFVVNGLSKSHAMTGARVGYVLSTPELIEEVTTVHLYNSICVATPSQYGAIRA
                     LKEGAADIEKMNAAYRERRDYIYQRLTDMGLSVTLPQGTFYIFPNVSAYDQDSFRFCN
                     QLLEREQLAIVPGKSFSDFAEGYVRLSFACDMPTIEEACNRLERFLSYYQA"
     gene            complement(11255..12631)
                     /locus_tag="PTC08_001324"
     CDS             complement(11255..12631)
                     /locus_tag="PTC08_001324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:solute symporter"
                     /protein_id="HDK5682837.1"
                     /translation="MKTIDFIVFIIYFAALISVGIIGVLKAKSSEKYMVADRNLGLWM
                     LFGCLTAVFLGGSSTIGTSQLGYEIGLSGFWFVFSLGVGITIFGLFLLDRIMDLQVIT
                     ISELLYRLFGHRVRVMGAVVTAMYTLMICVTQVIAMGAVVSQIFHWPMMTAILVGGSI
                     VFVYTILGGMWTLSITDVIQFLVMTIGIFCIMLPMSLHSVGGLTTLIEQLPASHLSFF
                     NIGVGEIVNYFVTYTLGVMVGQDIWQRFFTGKTKRVSKASGVLVGLYSALYSIVMVIV
                     GMCAYVLFPNIQNTQNVFAHMAFEILPNGLLGIVFAALIAAIMSTASGTLLASATIIS
                     NDLLKPYVFKNMEDHQFLGLTRLTTCILAVIAIVISIWVKEVLVAIDIAYAILTGGIF
                     MPVVLGLFMKRITPQAAFYAIIASVIVIFIGIAITGPQSTATIFYAILVNAIILIIMS
                     QFQRKKEA"
BASE COUNT         3809 a         2881 c         2185 g         4023 t
ORIGIN      
        1 attgtaagtg tgaaactata aaatgtaagg ataaattgat tttatttcat tggaggaaca
       61 ccatggcttt tattatttta ttgattttct ttatcattcg tctttttagc cttgctattt
      121 ctatcaaaca ttcaaaacaa cttgtacaac aaggggcaca ggcatacggc gaaaagaatt
      181 cgaaatggtt ggccatcaca catattttaa tttatgttgg tgcggcaatc gaaacattat
      241 tgaaccatga tacatggagc atagtaaata ctgtaggtct aatcatcatt gtactggctt
      301 acctcgtttt attccatgtc attaaaacac taggaccgat ttggactttg aagttgtata
      361 ttttaccaga ccaccctatc attcgctctg gtttataccg tgtcactaaa catccgaact
      421 actacttgaa tattatccct gaattaattg gtgttctgtt acttacacat gcgacataca
      481 cagctatctt attaattcca tacgcttact tcttattcgt tcgtattcgt caagaagaaa
      541 agctgatgtc actctaaaac aagagcacat gttgaaagct ttcttttttc atttcgacat
      601 gtgctgttct tttctgttgc cttcactaat tacaacaact tacatagact tgagtcatac
      661 cacattttga ctattatata cttcctattt ctccaattcc tgtatcaatt gtcccctttc
      721 tcgacgtgat ccatcaatta cttgtaccaa cgatataagc taggtctact ttcctttcaa
      781 agtgcaaaaa agacctagaa cgatgacgct ctaagtctct tgaatcaata ttgttttgat
      841 ttaccatctt ttacttttcc gttgatgtct tttcttcact ttctaaacgt ggaataacaa
      901 tatccatatc gaaatacttt ttcaaaaagt gtctataatt gttagatgtg acaggtgttt
      961 tgtgtttccc ttttttgtct gtcactgtta aattactttg agacatcgtc acacgtcctg
     1021 tcgaagtagg ttttgtcaca attaagtgat tcacaaatgg agaatctgga tgatgttgat
     1081 tgtattcaag tttatcatca aagtcagata cggatctggg ctcagcactt gctacaaatg
     1141 atgtttccca atgatcatct ttatattttt gtattttaat gtcatcatcc actctcaatg
     1201 ctcgatatac gccactttta tcttctacgg tctcacttcc atcatcagtg acacgcatcg
     1261 ctttgactgg ggatgcccca ccaaaaccga catctgcaat atacatctct ccatccatca
     1321 tcacaccaag cgatagatgc gcaccagcaa tactgcgacc tccgtctggt gtatgcacag
     1381 ttgcagaaag gtattgcgtt tcataacctt tagcctctat ataagcagca aaaaacgtat
     1441 tcaattcata acaaaagccg ccacgacttt gctcaacaat tttttcaaat aattcattta
     1501 aatcagtaga aatttccaca ccattttgaa cagatatatt ctcaaacggg atatgatgca
     1561 taaattgata catatattca tttaacgctt caacacgatt gaccgacagc ttttgcgcat
     1621 ctatctctat tttttgatct actttttgta tattcatcat catcctccta cttgttctta
     1681 tgtgcctgtt atttatattc ccttttgatg aacatgcatt catgctttga ccacctcaat
     1741 atcaacgcat tgattcaaga aaaaatgtca cattaggcac aacgcatcca tcatcattca
     1801 tactgcacct taaaaagcac gcatcgatag ccgacacgtg ccacaacaca tcactataca
     1861 ttaaacaaat cgttgaatga ttcagccatc gtcggatgtg tatagatgtt atctctcaac
     1921 actgcatacg gcaactgttg atcaatcgct aatttcacaa tattgataag ctcctcagac
     1981 tgctgaccat acaatgtagc gcctaacact tgacctgact tcgcatcgac caccgctttg
     2041 aacagacctc tcgtgtcatt gtttatttta tgacgtggca ttgtattcac agcaacttga
     2101 ttttcaagaa tatcataccc tttctcacgt gcttctgtcg cagtcatacc gacacgtgcc
     2161 atcggtgggt cgataaacat tgtatacggc accacgcctc gttgtgcgag tgtacgttta
     2221 ccatcgccaa acaattgtga tttcacaatt ctaaagtcat ccaatgaaat atacgtaaat
     2281 tgcaagccac catgcacatc gccaactgca tagatatggt caacagatgt ttgtaatttg
     2341 tcattcacaa taatttctcc acgttgacct agttgaacac ctgctgcttc taagtttaag
     2401 ccttctgtat tcggtttgcg ccctgttgcc acaagtacag catccgcttc aaatgtgcct
     2461 tggtttgtca caactttagt cacatcagct tcatcttcaa tcgcttcagt ttcagcatta
     2521 taaatgaatt gaatgccttt ttgtgttaaa tcttctgtca cttgttgtgc aatcactgca
     2581 tcttctcttt tcaagatttg atcagatcgc tctaagacag tcactgttgt accgaaattc
     2641 gcaaaaattg acgcaaattc aagtgcaata tagcctccac cgacaatcac tagacgtttc
     2701 ggttgctgcg ttaagtccat aattgctttt gagtcataca cacgttgcga tgtatcgata
     2761 cctttaatat ttggaatgac tgacttcgct cctgtgttaa tgacaatatt tttcccttca
     2821 atcgtttgta ccgcttcacc ttgtgcattc aataagtcga ttgcatgtgc ggacttgaat
     2881 gatgctgtca tatttatcac atctactgtc tcttcatctg caagattgtg atagttttta
     2941 ctgtttaatg cattgactac atcgcgttta cgttgcatcg cgtcgttaaa tgatgccgct
     3001 tcgattccgt catgtactaa tacttttgat ggaatacagc cgatgttaat gcatgtccct
     3061 ccatacattt cagcagactt ttcaatgact gcgactctct taccttgttg tgctgcaaat
     3121 tttgccaacg tcttccctgc cttgccaaat ccgacaacaa ttaaatcata ttgattcatt
     3181 tatgcttcca cctctctaat ttggttcaaa atatcaccta tcgtttgacc ttggtaataa
     3241 tttgcaatga tttcttgttc aattaaatag tggccataca tgacttgttc gattttttgt
     3301 gagattttac agtgcatgga agggtttcct gtaaataagc gtccatggtt ctcagggcga
     3361 ttgaataaac gaaaaagtgg ttctaactta atcgccaatc catcttcagt agcaagatat
     3421 cccccttttt gaccacgcac cactttaaca tcaccttttt gttgcaactt tgacatcacg
     3481 cgtcttaatt gcacaggatt gacacagaca ttttcagcga gtgcttggct attaaacact
     3541 tcccctttat gttgatttaa aaatgtgagt acgtgcacgg caatattaaa ttcaagattc
     3601 atcattgcac ctctttaatg taattcttat agttacatta aaacacatct tcattaaaat
     3661 aaaaacccta atcctttaaa tattgtttct acttttctgt aagcacacca tctttcattt
     3721 caaatacctt gtcacagtat gccgttagcc gctcgtcatg tgtcacaatc atacacattt
     3781 tgttgcgtcg tttagattca ttttttaaaa tctccatcac cgacatcgca ttttcagtat
     3841 caagagaagc tgtgggttca tcagctaaaa tgatatctgg attcgtatag atcgccttgg
     3901 caatagcgac acgttgtttt tgtccacccg atatttcact tggtaactga ttcatgacac
     3961 tttctaaacc taactgttgg ataagtgcat caaaatcttg ttgtgccatc acgtcttttt
     4021 ttcgcttttt caagagttga aattgctgtt tgactgttaa aaatggtact aaatttgacg
     4081 tttgtaatat aaagccaatt tgttgcatgc ggacacgtgc caatgctttt tggcttaaat
     4141 ctgttatttt ttgtgtgccg atgataatat ctccggatgt cggcttttgc aatgcacctg
     4201 ccattgttaa aaatgtactt ttccctgaac cagatggccc tacaatcgct ataagttctc
     4261 ctggactaaa ctctagtgtt gtcggtttta ccgcttcaat aacctgttgg ccatctttaa
     4321 atgattttgt gacattttga aatttcaaca taccttttac ctcctaaccg attgctttca
     4381 gtggatcaat tttgcgtatc gtcattattg aaaataaact gcccaatagc gacactaaaa
     4441 tgagcacaat accaaaaatt ataagcgtga gcatctcaaa tttaatcggt acggcagaag
     4501 gtaaaaatgt acctgtcacg agggttaata ttaagccaat aactgtccca atcagcgcta
     4561 atacaaatgt ttgagataat acgactttca ctaaatctcc atttgtaaat ccttgtgctt
     4621 tcaacacgcc aaacaattgc gtcttttgta acgtaatgac atataaaaaa acaccaatga
     4681 ctgtagccga gataataaat aaaaaactaa tcataaagtt taaagttaaa ttttgcgctt
     4741 gataacctgg caggttttcg ataaatgtat tgatatctat tgcttcaagt gtcgagtcta
     4801 gtttttgatg ttgccaatga ctatctttta caacgacggc attcgtttta tccccagtta
     4861 aaagaggatt tattttttca atcgtttgat cattcccaaa gagaacagga gaggcattgt
     4921 attttgctga ttcggtaaat cctacaattt tgagtgtttc atctgattga gaaagtgata
     4981 acgtgtcccc gagtttgaat cctttttctt tcaatgtacc gtcagctatg acttcattat
     5041 ctgcagtaaa cgtacgtcct tctgtcagtt gagggacaat aaacgcatct ttttgcgttc
     5101 catatagcaa tgcattttct tcaattttac cgttagagac aatgactgct gcttgtttca
     5161 atgtggcttg tttatcaaat tttccattca caagcgtttt gtcaaagctt gattgctgaa
     5221 ctgtttggtt ggcatccttg tttaacacaa tcgcatctgc ctcccaacga ttaatacctt
     5281 ccgtattcat attgataagt cctttcgcca atccagacag taaaaataat agataactga
     5341 tgaggatgag aacaccaata atgagactga atttaagttt gttccgtttg atttcattcc
     5401 atgctaaaaa cataggcacc tcctgagatg atataggtta tatcttccct aaatccatat
     5461 attttaagcc tcatttcaat aaaaaagagc tgagacgata ttaacatctc aactctcttc
     5521 atatatcttc cataaaatta gtgtctaaag taatagaatc cacgttatac tacctaacaa
     5581 aatgacgcat gcaagtgatg tcagcatttg acgtgcaatc attttacccc cttcacgcca
     5641 ccctaattgt cgcatgacca tcgtcattgt aacagagcaa gcggtaaatg ttgagctgaa
     5701 aaagacgagg agtaacactt gccatgatga taggttatgg ataaactgtc catctccgat
     5761 attaaataac aacatgccat ctttacgaat catcgagaag agtatacccg gtgatagttc
     5821 atgtggaatg tgtaataagc taaggagtgg aataaacaat tttgaaatca tttccattat
     5881 tggcgtcaat gccaaggcac tagcaatcaa acaaatggta ataaatattg gtaatgcttg
     5941 aaatagaaac atcttaacac tttctcccat ttgggataac acacgcccta aagatggcca
     6001 tgttaatgac tcatccaacg tcgtctgtat aggcataaac tgttgctctg tgcgatacca
     6061 taatcggtta tgcaataatc ctcctactaa cacaagtaat aaatacggga taaagagcca
     6121 tgtttgatgt gcgacgttaa atattgaaag tgtcgcacca atttggtaac tacatgatgt
     6181 cccaaaactg ataagactca tacaacgcgt acgggtacat aaatgacatt gatgacctgc
     6241 ttgtacaatt gccgcagcat tgcatccaaa accttctaac aatggaataa tatctgttgc
     6301 atcgagtccc accttcccca ttgtgggcgc aatcgaccaa atgatatatt gtttcaagtg
     6361 cgattgctca attaatgcag tagacaaact cagtaacaca acaaccggca atgcccaaac
     6421 aagtgaatac gtgcccaatg ataaaacacc gtaatcacca aataaaaagg cgtggatgag
     6481 tgatggacga aaaagcggat gttgtgcaac tgaatcaatc caaggtgcaa caaactcgct
     6541 ttgtaaccaa tcagaaaaat gataggcaac ataaacaggg acagcgaaca ttaaaaagac
     6601 gcacaaccac cctaataacg tatgtaaagg gcgtgggcgt tgctgatgat gaacacgcca
     6661 aaatgattgc aattgtgcaa catgttttcg tgtttcttcc gtcgtacaat ggacagcttg
     6721 attgagcgac accgctaacc gttgttgaat cacgaaacgc ttaaacgctt gctgttcata
     6781 cggggtcagt tgtttccatc cacatactcg aaactgatgt ggttcgttag gaatatcaga
     6841 tacacgaccg ctgaccaaat gatatgtgac tgttagcatg aacagttcac ttcacaacaa
     6901 ctataatcat ctaaatacat gtgattatca cggtaactat caatcactgc ttgatctaca
     6961 gagaggcctt cacgctgcat catcgtacgt gccaatactg caaatcgcgc tctaaactta
     7021 tagatataac aaagtatcgc atcagcatgt cttacggtcg cgcctattag aaaaacattg
     7081 ggataacgtg tcgattcatc taaatctgtt aattgaactt ctccatttct tactgtaaag
     7141 agttgttgaa taagtgggtt tttcgttaca tcaaagcctg tcgcgataat cggctccgcc
     7201 gtactgtata cgatggcacc attatcaaaa tggatttcat actggccatt gcgaaatata
     7261 atagactctg cacgatagtg aacgttcatt tcaatttctg caccttgttg taccgcttct
     7321 cttagacgtt ggtgtgtata tggagacaaa cgtatacttg gatcagcttc atctgcatca
     7381 aagcctgttg aacttgtata aatggagact tgtgcacctc ctttagcgag atggatagcg
     7441 gcatcgaatg cactttcatt tccacctatg actgtaaacg tatgaccagg taatgcttta
     7501 aaatcagcta cctcactata atgaatccca tgatcgaatg gttgatttgg aaaggcaaag
     7561 tcacctgtcg caacgtaaat ataatctgcg gtataagtgc cttgagatgt atttaattca
     7621 taaacgccat cgacaaattg aacatcttct actttcgttt ctgtccgtat atcgatgtca
     7681 taatgttcag caacaaccgt taaatattct gcaaaggtat cacccgataa atgttcttca
     7741 ttaaatgtaa aagcaggtga tgtatcttta gcaatggcat tcatgtctgg cataccaaaa
     7801 ccgtttgaag taaaggacgg ggtaattgtg cgtgtggatt tcggccaatt tttaaaagat
     7861 tgcccgattg cgccagcctc tatgacacaa acatcttcga catgaagcgt cttcatcgtt
     7921 atcgccatgc caacacctgc agcacctgca ccaataataa tgactcggtg atgttgtttc
     7981 attacaatcc ctctttctaa atcgaaataa ttacgattta ttaattgtag accatctact
     8041 gagtgattgc aatatgaaca acttgacgat gcgcttgtca ttatgatcca taaagcataa
     8101 aagaaaacga ggatggatat aaaaattttg atatcctaac ctcgtcatga tatgaagcgt
     8161 gacagcctat tttgcaatgt tcagcacgat acacgacttg tgccactcca attcaaacac
     8221 ctatcaatcc aacatgtcat tcaacaggcg ctcaatcgcc aagcccgctt caaatcgttg
     8281 cacataggtg ttaaaacttt cgatatcacg cgcttgtggt gccatcattt cagtctcaac
     8341 gtcacgaaag ccgacatgct ctaaaaacgc cgctaacgtg acattgttct ctaacatata
     8401 tcttgctaac attgccatgc cccatgcgcc gccctcattc gcattctcca tcactgtgac
     8461 tggactttct aacgccgctg ctaaataacg ttgtaccact tgtttcgtcg caaaaactcc
     8521 gccgtgacct gtcatgcgat ctatttgcag ttgctcccgt gttttcaatc gatcaacacc
     8581 tattttgagt gtactgagca tcgtaaaaat atggtttttc atgaagtttt ggatattaaa
     8641 acgactgtct tgttgccgta taaataatgg aaatcctcta ggaacatcag tcatgtattc
     8701 acctgaaata tagccatatg ataacagttt tcctaagtca tcgtctccat ctaatgcact
     8761 ttcgaataaa cgtgtccata acgtcgtctt atcgtatgac atatccataa gttgaaaaac
     8821 ctcttcaaat aaatgtaccc aatgattcaa atctgacgac ccattattcg catgaatcat
     8881 cgccacttca tctccagctg gcgtcgtcac aatatcgacc tccgggtata cggcttgcag
     8941 tggctgttcg aggacaatca tagcgaaaat actcgttcct gccgatacat ttccggtttt
     9001 tggtgcaata ctgttggtcg ccaccatacc tgtacccgcg tcgccttctg gtgcacacat
     9061 cggacatccc gacgttaacg tgccagttgg atctaataag cgtgcgccat ctgccgtcaa
     9121 agtccccact tgctcaccag ccacgtggac tgtcggtaaa atgcgctgta tgtcttgatc
     9181 atatccattt gttgccatta atgtatcgaa ctgttcacat aagtcttttc gatatgtggc
     9241 agtcttgggg tcgataggaa acatccccga agcatcacca attccgagca ctttttctcc
     9301 cgttaattgc caatgaacgt aacccgataa cgtcgtcatg tacgcgacat ccttcacatg
     9361 tgattcttct ttcaacgcac tttgataata atgtgcaata ctccaacgtt caggaatatt
     9421 gaactgaaat gcttctctta actgtttacc tgcttcatgt gcggtattat tacgccacgt
     9481 ccgaaaaggg acaagcagtt gaccttgtgc atcaaacact aaataaccat gcatcatccc
     9541 gctaatccct aaacttgcca tgtgcgtgag tttcacctca tatgtcgctt ttatttcccg
     9601 ggtcatcaaa cgaaaactct ctcgaatccc ttgccaaact tcatctaaat cataggacca
     9661 atatccgtca gtcagttgtt gttcccattc ataatgccca gtcgcaatcg tgcgtgtcgt
     9721 cgaatcaata gcgacagttt tgatgcgcgt cgaacctaat tcgataccta ctgaaatgtt
     9781 ccccgcttcg atttgttgac gtatcgtttg cttgtccatc ctatcacctc gttcgtcttc
     9841 ttacctttta ttgtataaag attgttaaat gaaaccaaga catgttgctc acgaaaatac
     9901 cccatatacg tctatttgat gatgcttgtt ttattacaca gtcgagttga gatctttcac
     9961 gctcgcatct ctattttgtc atagttaaag cgcgcatgag ataaaccatc atcccatacg
    10021 cgctttaata attgttatgc ttgataatat gataagaaac gttccaatcg attacatgct
    10081 tcctcgattg ttggcatgtc acatgcaaag gataaacgta cataaccttc tgcaaaatct
    10141 gaaaatgact tgcccggtac gatggccaac tgttcacgtt ctaacaattg attacaaaaa
    10201 cggaatgaat cttgatcgta cgccgacaca ttcgggaaaa tataaaatgt cccttgtggt
    10261 aaagtgactg ataggcccat atctgtcaaa cgttggtaaa tataatcacg acgttcacga
    10321 tacgcggcat tcatcttttc aatatcggca gccccttctt tcaatgcacg aatcgcaccg
    10381 tattgactag gtgtcgccac acaaattgaa ttatataaat ggacggtcgt cacttcttca
    10441 atcaattcag gggtcgagag cacataacca acacgcgcac ccgtcatcgc atgtgatttc
    10501 gataaaccat tcacgacaaa cagttgcttg cgaatctcag gaaactccat aaatgaacga
    10561 tgtcgtcctt caaatacatt ttcactataa atttcgtccg taataatgaa aatattcgtc
    10621 tctttcaata ctgctacaat ttccgcaata ttttcatatg ataatgtcgt cccagttgga
    10681 ttcgtcggat agttaaacat aatcgctttc gtttgaggtg tgatggccgc cttaatcgca
    10741 tcagcagtcg gcacaaaacc ggtatgtgag gtatcaatcc atttcacctc agcaccttgt
    10801 agtttgacaa tcggctcata ccctaaatac gttggccccg gtaagatgac ctcttctcct
    10861 ggatttaaaa tcgttcgtaa gatgtcatca atcccttctg atgccccgtt agtcacgaca
    10921 atttctgttt caggatcata tgttacacca aatctttcag ctgtatattc tgaaatcgcg
    10981 gtacgtaatt ccaacaaccc tttattgtgt gtatatttca atcgcccctc ttgaattgct
    11041 tgaatcattg cgtcttgcac atatgaagca acagggaagt cagactgccc gagcgttaaa
    11101 tctaaacagt ttgggtattg atcaacctta ttcgcaaact gacgtgttcc aggtacctca
    11161 atgtctttaa tatgattgtt tagtaactcc atttcataga tgccccctta ataatatgtg
    11221 tatggtgcaa tatagataac ttcaacacca cattttatgc ttctttttta cgctgaaatt
    11281 gagacatgat gattaatatt atagcattaa caagtattgc ataaaatatt gtcgcagtag
    11341 attgtggtcc tgtgatggcg ataccgataa aaatgacgat cacacttgcg ataatggcgt
    11401 aaaatgccgc ttgtggtgta atgcgtttca tgaataagcc taaaacgact ggcataaaga
    11461 tacctcctgt caaaatcgca taggcaatat ctatcgcaac gagaacttct ttcacccaaa
    11521 tcgaaatgac tattgcaatg actgcgagaa tgcatgtagt caaacgtgtc agccctaaaa
    11581 attgatgatc ttccatattt ttaaaaacat aaggtttcaa caagtcattc gaaataatcg
    11641 tagctgatgc aagtaatgtc cctgatgctg tagacataat tgccgcaatt aaagcagcaa
    11701 agacgatccc taataagcca ttcggtaata tttcaaaagc catatgtgcg aatacgtttt
    11761 gcgtattttg gatgtttgga aataatacat acgcacacat gccgacaatg accatcacaa
    11821 tagaataaag tgcgctatac agacccacca acactcctga ggcctttgag acacgcttcg
    11881 tcttccctgt aaagaaacgt tgccaaatgt cttgtccaac catgacacct agtgtatatg
    11941 tcacaaagta attcacaatt tccccaacac cgatattgaa aaaacttaaa tgtgacgctg
    12001 gcagttgttc aattaatgtc gtcaatcctc caacactatg taaactcatc ggcaacataa
    12061 tacaaaaaat acctatagtc atcactaaaa attgaatgac gtcagtaatc gagagtgtcc
    12121 acatgcctcc tagaatcgta tacacaaaga caatactccc accaacaaga atcgctgtca
    12181 tcataggcca atgaaaaatt tgggacacga cggcacccat cgcaatgact tgtgtcacac
    12241 aaatcataag cgtatacatt gctgtaacga ctgcgcccat cactcttaca cgatggccaa
    12301 ataatcgata taacagttca ctaatcgtaa tcacttgtaa atccataatg cgatcaagta
    12361 aaaacaagcc aaatatcgta ataccgacac ccagtgaaaa tacaaaccaa aagcctgaaa
    12421 gaccaatttc atagcctaat tgtgaagttc cgatagtaga agaaccacct aaaaatacag
    12481 ctgttaggca tccaaacaac atccatagcc ctaaattacg gtcagccacc atatattttt
    12541 cagatgattt tgcttttaat acaccaatga tacccactga aatgagtgct gcgaagtaaa
    12601 tgataaatac tataaaatct attgttttca ttttaatcaa ctcgctttgt gttttgttgt
    12661 ttatcctttt tgtacatggt gatgcattac cgaaaccccc atcattttca gaataatcct
    12721 tcgcgcgagt gtcatcttaa gtttgtgaat catacatttt cgggcgatcg ttaaacaccc
    12781 tactctcgcc ctacaacccc ctttcttttc ccatgtatcc acgtcaagta ttctcatagc
    12841 tagcctgaga atctaagcac cgtaataacg gcaatgtccc tttactttga tacattaa
//
LOCUS       DANHOL010000064        12746 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.064, whole genome shotgun sequence.
ACCESSION   DANHOL010000064 DANHOL010000000
VERSION     DANHOL010000064.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 12746)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12746)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12746
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.064"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            30..1256
                     /gene="pgaC"
                     /locus_tag="PTC08_001325"
     CDS             30..1256
                     /gene="pgaC"
                     /locus_tag="PTC08_001325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="poly-beta-1,6 N-acetyl-D-glucosamine synthase"
                     /protein_id="HDK5682838.1"
                     /translation="MDILLILLLYPLFMSIYWIVGTLFYALFYEIRLKKAPNKNIGED
                     GISFLIPCFNEADTIADTIKSIVALEFPNKEIIVINDGSSDNSAEMLYRLQNTLDFIF
                     VDLPENNGKANALNQGLKYATYDYVMGIDADTMIDNDGPYFMLEHFKKNPKLAAVTGN
                     PRIRNKRALLGKIQAIEYASMVGSIKRAQSIMGKINTISGVFTLFRKSAIEAVGRWDI
                     DMITEDIAISWKFHLHGYHIKYEPRALCWMLVPETVSGLWKQRIRWAQGGQEVLIRDG
                     LKGLKSMNPALYMLVFEQFFSLIWVYWIVISLLLAFLNSNFLDIYYLQYHFSIIILSA
                     LILTFINIVQFTVSLIIDSRYEKQNMFTLFYLSWYPTIYWVLNALVAMLAFPKALLRK
                     KGEFATWSSPDRGKKD"
     gene            1223..1549
                     /gene="icaD"
                     /locus_tag="PTC08_001326"
     CDS             1223..1549
                     /gene="icaD"
                     /locus_tag="PTC08_001326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="intracellular adhesion protein D"
                     /protein_id="HDK5682839.1"
                     /translation="MVKSRQRKKRLKHSILNLIREVIIFCFSISLWLYCLIAFILIIG
                     SLLRISAHSVLLIRTVLNIEPDSMNQIFVKMASFIVIVTMIFTTSICVHLYRNKKEGI
                     NDGKFL"
     gene            1533..2399
                     /gene="icaB"
                     /locus_tag="PTC08_001327"
     CDS             1533..2399
                     /gene="icaB"
                     /locus_tag="PTC08_001327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="intercellular adhesin biosynthesis
                     polysaccharide N-deacetylase"
                     /protein_id="HDK5682840.1"
                     /translation="MVNFFKLSIAIGCVVYTMAMALFPTNQAEAETHKLKDDGDKTAL
                     ALNYHRIRNDDFLDLFLFIFSNSKEISTYSVSKAEFERQIKWLKAHDAHFLTHEELIR
                     YKREGHFPKRSVWINFDDMDESIYKNAFPILKKYQVPATGFVITGEVGAQNFHNLNLS
                     TIDELEEMERSGLWTFQSHTHDLHSLEKTKSKMLTVSSKVLKYDLQTSNDYLDQHFNR
                     KETAIAYPYGQVNDEAVEIIKDSGISYGYTLEEKAMSVDDKNYYIPRILVSQNAFNEL
                     VKKWGAFNHDAS"
     gene            2386..3444
                     /gene="icaC"
                     /locus_tag="PTC08_001328"
     CDS             2386..3444
                     /gene="icaC"
                     /locus_tag="PTC08_001328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide intercellular adhesin
                     biosynthesis/export protein IcaC"
                     /protein_id="HDK5682841.1"
                     /translation="MTRRKTKLELVYFRAFTCMLIILTHIFTEFMRHLDTSNLAELKL
                     IYYLQHIVIFGTPSFIILSQLLTTLNYETINVNYIWSRVKYILLPYFIVGAFYCFSES
                     RITATSFTHQLFENLLLGRWHGYFIIVIMQFVLLSYVIFKVSPKLFDSKILLALSFII
                     QFSFLHQFDTNPAFAEKFMSIYPLSENTCMLGWIFFFFFGAYIGRRYNAVINFLRQYV
                     FIIITLAILSFGVFVIFQQHDYGWVTSFNENLMLYHTLMFLLLLSLCLHFKQMMLGTI
                     NLISAFSFFIYLFHPIILSTLYEYFLNFADLTFVFIAISLLYTLGICIGIGLFLREFR
                     IFRFAIGKQPYNLNIQLS"
     gene            complement(3441..4475)
                     /locus_tag="PTC08_001329"
     CDS             complement(3441..4475)
                     /locus_tag="PTC08_001329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="family 20 glycosylhydrolase"
                     /protein_id="HDK5682842.1"
                     /translation="MKWGFSIGLSLMLIFTTFQSEAVAPKFQKGVNIDIARKDYSLET
                     IKEIVDTIAKYDGDYLQLHFADDQHHAVDLPGMSPTKRDTLSYEEIKTLIKYSNKRDV
                     MVVPDIDFPSHAGALLQQLKKQDKARYKTVVSDFSTNTVDYFDNQEAVKWSSEYLKDV
                     MSLFEQPKFKGEQRIVIGGDEVPGAMDHQKAFVHFMNKLAETAKNKGYQPQIWNDSLT
                     KQGVQQLDAHVSVLYWNQHEATHRQQAHVEDLAKANISVFNYNASTLYFLPSSQHSKQ
                     TIQQQQQFIERYYADNRFNYFNDAHHVVAQPNIQGSALSFWGEHAETLSQQEILQQLQ
                     PLIKTYLTQN"
     gene            complement(4743..5435)
                     /locus_tag="PTC08_001330"
     CDS             complement(4743..5435)
                     /locus_tag="PTC08_001330"
                     /EC_number="6.2.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-carboxyhexanoate--CoA ligase"
                     /protein_id="HDK5682843.1"
                     /translation="MYSVKMRANQGGVHISGAETICEAQKIPAVLQTFFDKGFQHENG
                     DVDFLNLKIEKVTEPLHTLEALPIIEDTTHTLEALCEMHGITKEALDKGMGYIFDDTQ
                     YRGAIIVSAQTGERLDQTGEKGVRVTHFCFEDYARIPLVSSRIQDALTIATCITAFAQ
                     VKGELCVSDDLHYTTGYFASAHRGYYRLHHMKPTGTRFGGRVIFVDDALSIDSYTSFL
                     QQQPKQVIRHEQ"
     gene            complement(5438..6559)
                     /locus_tag="PTC08_001331"
     CDS             complement(5438..6559)
                     /locus_tag="PTC08_001331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase
                     family protein"
                     /protein_id="HDK5682844.1"
                     /translation="MDLQRKLDAIQAKGQLRQLREVEAVDGKWLTVQGRSFLNFTSND
                     YLGLGQMTHADGMSEKGQKHLASSRLVSGNSALYTKIERLLSTHFHFEDALVTTSGYD
                     ANLAVMQAFQDETVVVFSDEANHASIIDGIRLSRLKKVIYPHNDVVALEKALLQYPET
                     LTKVIVTDSVFSTDGAFAKLDALVQLKAKIPNIWLVVDDAHAFGLRLHTHYSNIDILT
                     TSLSKGVGAHGGAILCSALFKQVLINVARPVIYSNALPQLQLAQLYENLKIILAQPEK
                     AQVLHQLSDTFNQLYERDFGVPYEGHSRTPIKWISFDDDHEIECVYQALLAQGIWVSY
                     FRYPTVTRPILRVSLSLFHDAHDLEYLFEQLLLARCKGV"
     gene            complement(6562..7914)
                     /gene="bioA"
                     /locus_tag="PTC08_001332"
     CDS             complement(6562..7914)
                     /gene="bioA"
                     /locus_tag="PTC08_001332"
                     /EC_number="2.6.1.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylmethionine--8-amino-7-oxononanoate
                     transaminase"
                     /protein_id="HDK5682845.1"
                     /translation="MKHETLVQKDRDYVWHPFTQMGMYNQQDPIIIEKGKGSYLYDTR
                     GRKYLDGYASLWVNVHGHQNRQLNRAIQRQLNQIAHSTLLGSSNVPSILLAEQLVTMT
                     PERLQKVFYSDTGSAAVEIAIKMAYQYWKNLDAERYAKKNKFLTLHQAYHGDTIGSVS
                     VGGIDTFHRIFKDLIFENIQVPCPSFYHSDYASEAAMVDDILKQIEAILQARADEIVG
                     FVIEPLIQGATGLYVHPEGFLKAVEQLCRKYNILLIVDEVAVGFGRTGKMFACEHEDV
                     QPDLMCLGKAMTGGYVPLAATLTSQAVYDAFLSDAHAKQTFFHGHTYTGNQVVCAVAL
                     ENIRLFQTRHLIHHIEKTSTTLRKSLETLSAHPHVGNIRGRGLMYAVELVENCSDKTP
                     LDIAQVEAMIAKCKQEGLMIRNLENIITFVPVLSMSNREIKKMVRIFKKALHHVLKER
                     "
     gene            complement(7904..8581)
                     /gene="bioD"
                     /locus_tag="PTC08_001333"
     CDS             complement(7904..8581)
                     /gene="bioD"
                     /locus_tag="PTC08_001333"
                     /EC_number="6.3.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dethiobiotin synthase"
                     /protein_id="HDK5682846.1"
                     /translation="MKLFITSTNTDVGKTYVTTHLYHYLTRKGLKVHIIKPFQTEVLP
                     DGKYPDLESYQKMCGLSYADTSFYMFAAPVSPHLAFKLEPHQQLDRMAIKAWVQTWHA
                     QCDVLLIEGAGGIGVPLYEDETTFYMTADFIRDVADGVISVLPSQLGAISDALVHHHY
                     LTTMQLPKGLYVMNRYTDTPIEQDNHQTIEKITGRHVEVFPEAGTDRDFSETLFDQIK
                     GVITYET"
     gene            9049..10653
                     /locus_tag="PTC08_001334"
     CDS             9049..10653
                     /locus_tag="PTC08_001334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate permease"
                     /protein_id="HDK5682847.1"
                     /translation="MNTLLMLVALSAVITPFICLVLLRMSALVGMTISAIVVTLLGFS
                     VWGIEAGVIGASLLQGAHKTLTIILILFGALTLLNTLRETNAVARINASFQSVSSDMR
                     IQVIIVAFLFGSLIEGASGFGTPAMVTAPLMVALGFRPLVSVTTALIADSISVSFGAV
                     GTPVIVGLSTLKRANEQLFSETAIHITLIDLFSGVFIPLIIVTTMIIFFGKSNKLNAV
                     LEILPWTLLIGAVYAIVAWIYASLTGPEFVSILSSLTTLIVAVVTARKGWLVPKNEWT
                     EALTDDYKVSDLSQPHEMSLLAAWSPYLIVVVLLLLTRIVAPVKTLTTTVLDLSWTHI
                     LGYPTISSSWQLLYSPGTILFIAAIFAILIQRKSFRHFSKACKDSAKTISVTGFTLIA
                     TLAMVHVFSNSGLNSKDLLSMPEFIANGMAHTFGDMWLFVAPFLGALGSFITGSATVS
                     TLTFAPVQANIADAIGADLYTVLAAQVIGGAAGNMICVHNVVAVCAVVNMAGKEGSVI
                     RKTLGPALLYCALVGISAFVFATFFL"
     gene            complement(10749..11936)
                     /locus_tag="PTC08_001335"
     CDS             complement(10749..11936)
                     /locus_tag="PTC08_001335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XRE family transcriptional regulator"
                     /protein_id="HDK5682848.1"
                     /translation="MFKGENLKALRMIEGYSRKSLADVLQVSEQAVWQYEEQNMMPEI
                     NKIYTLAQKFNVKTKFFFSPKQELFSITAVDTHSIAFRSKNQRTSTKILSQNHAQANF
                     YAQLTSHLSAYVKQPHLPILTLVSKIDRYFSQNIDARVRIQLIANDAREMILGDQSNH
                     QLLLALEKFGVYIYEKDLTDDADAYSFWSKYQVPFIILSNNKGVAVRRHFDLAHELGH
                     LLLHRQIEFDMLSHEDFQRIEKEADIFAAEFLLPEKQFIASFNQVKKKSNPDHFVMLK
                     ERWYVSIQAMAMRAYYLGLISDTQYRYFWSLINKKGYKKREPLDAEIKLPKPVKINSL
                     LNMLFTKKVLTPESLLNNLQVEPEFLYKKANISQKLFEKFMQQEKQTAEADVLKGYII
                     PFT"
     gene            complement(11958..12716)
                     /locus_tag="PTC08_001336"
     CDS             complement(11958..12716)
                     /locus_tag="PTC08_001336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682849.1"
                     /translation="MSQFNHQLKLSIVKGIVAGYKEYVEVRNEAHKKLKVSNGYAFTK
                     ANYIDHHVALHTENFVENTRRSAGPSWKFLLFSPTDKHHEKIFHFVVVSGRTFNKDKV
                     NKGRRLIHNGGEPPEKKYLTELIELNRGVDFEKLNQSLHVNHQLNADKMLFDMINNDS
                     SDKIKFIMITYDVDHQSKMLKEIKVWIPNPMTYSAIEFLNLTEEMNDVIKNDEHYQIN
                     EEEIEVLKQDREDVEWIDTEVFGFEIEEIKESDL"
BASE COUNT         3738 a         2499 c         2231 g         4278 t
ORIGIN      
        1 cactcttatg atttaggagg ttaattgtta tggatatttt actgattctg ctgttatatc
       61 ctttatttat gtctatttat tggatagtcg gcacactgtt ttatgctctt ttttatgaaa
      121 taagactaaa aaaggcgccg aataaaaata ttggggagga cggtatttca tttttaattc
      181 catgttttaa cgaagctgat acgatagctg atacgattaa aagtattgta gcgttagaat
      241 ttccaaataa agaaatcatc gtgattaatg atgggagttc tgacaactcg gcagaaatgc
      301 tttatcgact tcaaaataca ttagatttta tttttgttga tttgccagaa aataatggaa
      361 aagcaaatgc attaaatcaa ggactaaaat atgcaacata tgattatgta atggggattg
      421 atgcggatac gatgattgat aatgacggac cgtattttat gctggaacat ttcaaaaaga
      481 atccaaaact cgctgcagtt acaggtaatc cgcgtattcg caataaacgc gcactgttag
      541 gaaaaataca ggctattgaa tatgccagta tggtcggaag tattaaaagg gcccagtcta
      601 ttatggggaa aatcaacact atttctggtg tgtttacatt atttcgtaaa agcgcaattg
      661 aggctgtagg gcgttgggat attgatatga ttactgaaga tatcgcaatt tcgtggaagt
      721 tccatttgca cggctaccac attaaatacg agccacgtgc tctttgttgg atgcttgtcc
      781 ccgaaacagt ttcaggttta tggaaacaac gaatacggtg ggcacaaggt gggcaagagg
      841 tgctcattcg cgatggttta aaaggactaa aatcgatgaa ccccgcttta tatatgcttg
      901 tattcgagca gtttttctcg ctcatttggg tgtattggat tgtcatttct ttattgttgg
      961 catttttgaa ttctaatttt ctagatattt attatcttca atatcacttt tcaatcatta
     1021 ttttatccgc acttatttta acgtttatca atattgtgca gtttacggtg tctttaatca
     1081 tcgattcacg ttatgaaaaa caaaatatgt ttacactatt ttatttaagc tggtacccca
     1141 ctatctattg ggttctcaat gcacttgtag cgatgttagc atttccgaaa gcattgctca
     1201 gaaagaaagg tgaatttgca acatggtcaa gtccagacag aggaaaaaaa gattgaaaca
     1261 tagcatatta aatttaattc gagaagtcat tatcttttgc ttctctattt cattgtggct
     1321 ttattgcttg attgcattta ttttaattat cggttcatta ttacgtatta gcgcacattc
     1381 ggtgttatta atacgaacgg tgctcaatat tgaaccagac tcaatgaatc agatttttgt
     1441 aaaaatggcg agttttatag tgattgtcac aatgattttt actacaagta tatgcgttca
     1501 tctatatcgc aataagaaag aaggcattaa cgatggtaaa tttctttaaa ctttccatag
     1561 ccatagggtg tgtcgtctat acaatggcta tggcactttt cccaacgaat caggcagaag
     1621 cagaaacgca caaacttaaa gatgacggcg ataaaaccgc actggcctta aattaccata
     1681 gaatcagaaa tgatgatttt ttagatttat ttttattcat tttttctaac agtaaagaaa
     1741 tttcaactta tagtgtgagt aaagccgagt ttgaacgaca aatcaaatgg cttaaagcac
     1801 atgatgcaca ctttttaacg catgaagagt tgattcgcta taaacgagaa ggccactttc
     1861 cgaaacgaag cgtctggatt aattttgacg acatggacga gtctatatac aaaaatgcat
     1921 ttcccatctt aaagaagtat caagttcctg cgacaggatt tgtgattact ggcgaagttg
     1981 gggctcaaaa ctttcataat ttgaatttat ctactataga cgaactcgaa gaaatggaac
     2041 gctcaggctt atggaccttt caatcacata cacatgattt gcattcatta gaaaaaacga
     2101 aatctaaaat gttaacagtg agttctaaag tactgaaata tgatttgcaa acaagcaatg
     2161 attatctcga tcaacatttc aatcgtaaag aaacagccat tgcctatcct tatgggcaag
     2221 tgaacgatga agcggtagaa ataattaaag atagtggtat ctcatatggt tatacgttgg
     2281 aagaaaaagc aatgtctgtc gatgataaaa actactatat tccacgtatt ttagtgagcc
     2341 agaacgcttt taatgaatta gtgaaaaaat ggggtgcttt caatcatgac gcgtcgtaaa
     2401 acaaagctag aactcgtcta ttttcgagca ttcacctgca tgcttatcat tctgacgcac
     2461 attttcactg aatttatgcg tcatcttgat acgagtaatc ttgctgaact gaaactaatc
     2521 tattatttgc aacatattgt cattttcggt acaccaagtt ttattatctt gtcccaattg
     2581 ttgacaacat taaattacga aactatcaat gtaaattata tatggtcacg tgtgaaatac
     2641 attttgctgc cttactttat cgtaggtgca ttttattgtt ttagtgagag cagaattacc
     2701 gcaacatcat ttacacatca actgttcgaa aatttattgc ttggacgttg gcacggttac
     2761 tttattatcg tcataatgca gttcgtctta ctgagctatg tcatttttaa agtatccccc
     2821 aaattatttg atagtaaaat tttgctcgct ctttccttta tcattcagtt tagtttttta
     2881 catcaatttg atacgaatcc tgcatttgct gaaaaattta tgtcgattta tccattaagc
     2941 gaaaacacat gtatgctcgg ctggattttc tttttctttt tcggggctta tattggtagg
     3001 aggtataatg cagttatcaa ttttttacgt caatacgtct ttattattat cactttagcg
     3061 attttatcat ttggcgtgtt tgttatattt caacagcatg attatggatg ggtgacaagc
     3121 tttaatgaaa atttgatgtt ataccataca ctgatgttct tgttgttgct aagcctctgt
     3181 cttcatttca aacaaatgat gttaggtaca atcaacttga ttagtgcatt ttcatttttc
     3241 atttacttgt tccatcccat cattttgagc acactgtatg aatacttttt gaactttgca
     3301 gatttaacat ttgtttttat cgcgatttca cttctctata cacttggtat ttgtataggt
     3361 atcgggttat ttttacgaga gtttcgcatt tttcgattcg caattggcaa acagccctat
     3421 aatttaaata ttcaactgtc ttaattttgg gttaaatacg ttttgatgag tggttgaagt
     3481 tgttggagta tttcttgttg tgacaacgtc tccgcatgct caccccaaaa tgacaatgca
     3541 gaaccttgaa tattcggttg ggcgacgaca tgatgtgcat cattaaaata attaaatcga
     3601 ttgtcagcat aataacgttc aataaattgt tgttgctgtt gaatcgtttg tttagaatgt
     3661 tgagacgatg gtaaaaaata taaagttgat gcattgtagt taaacacaga gatatttgct
     3721 tttgccaaat cctctacatg tgcttgctga cgatgtgtgg cttcgtgttg attccaatat
     3781 aagacagaaa catgtgcatc taactgctga acaccttgct ttgtaaggct atcattccaa
     3841 atttggggtt ggtagccttt attttttgct gtttcagcta atttattcat gaaatgtacg
     3901 aatgcttttt gatggtccat cgctccaggt acctcatctc ctccaataac aattcgttgt
     3961 tctcctttaa attttggctg ttcaaacaac gacatcacgt cttttaaata ttcgctgctc
     4021 catttgactg cttcttgatt atcaaaatag tctacagtgt tcgtactaaa atcggacacg
     4081 accgttttat atcgagcttt atcttgtttt ttcaactgtt gtagcaacgc acccgcatgt
     4141 gacggaaaat caatatcggg cactaccata acgtcacgct tattgctata tttgatgagc
     4201 gttttaattt cctcatatga caatgtatcc cgcttcgttg gtgacatacc tggtaaatca
     4261 accgcatggt gttgatcgtc agcaaagtgc aactgtaaat agtccccatc atattttgct
     4321 atcgtatcaa caatctcttt aattgtctcc agcgaataat ctttacgtgc aatatcaata
     4381 ttcacccctt tttgaaattt aggtgcgact gcttcacttt gaaacgttgt gaagatgagc
     4441 attaaactta accctattga aaacccccac ttcattttta caacctcctt tatgcatgtt
     4501 ttcccgggaa atgttaagat gccagaaata tcgtgtctcg acgtctactt ttttatctct
     4561 ttattacgtt tacgcaattg aagtaaagac aatatatgtc acttttcaaa tcaacacatc
     4621 cacccataat acgcaatcca ttccggttat ttttcccctc tttatcgaaa tcaaaccacg
     4681 catattttta tataaaaaca agggtcacct ccctttttca aaagaaaagt gaccactttt
     4741 tgctattgtt catggcgaat gacttgtttc ggttgctgtt gtaaaaatga agtataagaa
     4801 tcaatagata aggcatcatc aacaaaaata acgcgaccgc caaaacgtgt acctgtaggc
     4861 ttcatatgat gtaaacgata ataaccgcgg tgtgcagagg caaaatagcc tgtcgtgtaa
     4921 tgtaaatcat ccgatacaca cagttcccct ttcacttgtg cgaatgctgt aatacacgtc
     4981 gctatcgtca aagcatcttg aatacgtgaa ctaacaagcg gtatacgcgc ataatcttca
     5041 aagcaaaaat gggtcacccg aacacctttt tctcctgttt gatctaaacg ctctcccgtt
     5101 tgagcagaga cgatgattgc ccccctatat tgcgtgtcat caaaaatata tcccattcct
     5161 ttgtcaagcg cctctttcgt aatcccatgc atttcacaca acgcctctaa tgtatgcgtt
     5221 gtatcttcaa taatcggtaa agcctcaagt gtgtgcaatg gttccgtaac cttttcaatt
     5281 tttaaattca aaaaatcgac atcaccattt tcatgttgaa atcctttgtc aaaaaatgtt
     5341 tgcaagactg ccggaatctt ttgtgcttca caaattgttt cagcgccact gatatgaacg
     5401 cccccctgat tcgctctcat tttaacactg tacatcatta cacccccttg caacgtgcaa
     5461 gcaataattg ctcaaacaaa tattccaaat catgggcatc gtgaaataat gaaagtgaca
     5521 cgcgcaatat tggccgtgtg acagtcggat atctgaaata gctcacccat attccttgtg
     5581 ccaacaacgc ttgatagaca cattcgatct catgatcatc atcaaaagaa atccacttaa
     5641 tcggcgtcct tgagtggcct tcgtatggca cgccaaagtc acgttcatat aactgattga
     5701 atgtatcact taattgatgc aatacttgtg ccttttcagg ttgtgccaat attattttca
     5761 aattttcgta tagctgagct aactgaagtt gtggtaatgc attagaataa atgactggtc
     5821 gtgcgacatt aatgagcact tgtttaaaaa gtgctgaaca taaaatcgcg ccaccatgcg
     5881 cacctacacc tttggataaa ctggtcgtta aaatatcaat atttgaataa tgtgtatgca
     5941 agcgaagacc aaaagcgtgt gcatcatcta caacgagcca tatattcggt atttttgctt
     6001 ttaactgaac gagtgcgtcg agtttcgcga aagcaccatc agtagaaaag acgctgtctg
     6061 tcacgataac tttggtcaac gtttcaggat attgaagtaa tgctttttcc aacgctacga
     6121 catcattgtg cggataaata actttcttaa gcctactcaa tcgtatccca tcaatgatac
     6181 tcgcatgatt ggcctcatca gaaaacacca ccaccgtttc atcttgaaaa gcttgcatta
     6241 ccgctaagtt agcatcataa ccactcgtcg tgaccaatgc atcttcaaaa tgaaagtgtg
     6301 tgcttagcaa ccgttcaatc ttcgtatata gtgctgagtt accactcact aatcgtgaac
     6361 ttgcgagatg cttttgtccc ttttctgaca tcccatcagc gtgtgtcatt tgtcctaaac
     6421 ctaaatagtc attcgaggta aaattcaaaa aactacgccc ttgcaccgtt aaccacttac
     6481 catcgaccgc ttccacttca cgcaattgac gtaattgacc cttagcttgg atagcatcta
     6541 atttgcgctg aagatccatc actaacgctc ctttaaaaca tgatgtaatg cctttttaaa
     6601 tatgcgaacc atctttttaa tttcacgatt ggacatactt aggacaggca caaaggtgat
     6661 aatattttct aaatttctaa tcatcagtcc ttcttgctta catttcgcaa tcatcgcctc
     6721 cacttgtgca atatcaagag gtgtcttgtc tgaacaattt tctacaagct ccacagcgta
     6781 cattaaccct ctcccacgta tattacctac atgcggatgc gcactcaatg tctctaaaga
     6841 tttacgtaaa gtagtcgacg tcttttcaat atgatggatg agatgacgtg tttgaaacag
     6901 gcgaatattt tcaagcgcaa cagcacaaac gacttgattg cccgtatatg tatggccgtg
     6961 gaaaaaggtc tgtttcgcat gtgcatcact taaaaaggca tcgtaaaccg cttgggacgt
     7021 taatgttgcg gctaatggga cataaccacc tgtcatggct ttgcctaaac acatcaagtc
     7081 aggttggacg tcttcatgct cacaggcgaa cattttgcca gttctaccaa atccgaccgc
     7141 aacttcatcc actatgagta aaatattgta ctttctacac agttgttcga ctgctttcaa
     7201 aaatccctct ggatgtacat aaagtcctgt tgctccttga atcaacggct cgatcacaaa
     7261 gcctacaatt tcgtctgcac gcgcttgtaa aatagcctca atttgtttta atatgtcgtc
     7321 caccattgct gcttcagatg catagtcact atggtaaaaa gacgggcatg gcacttgaat
     7381 gttctcgaaa atcaagtctt tgaaaatgcg gtgaaacgta tcaatcccac caacactgac
     7441 cgagccaatt gtgtcgccat gatacgcttg atgcagcgtc aaaaacttat ttttcttggc
     7501 atatctttcc gcgtccaaat ttttccaata ttgataggcc atcttaatcg caatttccac
     7561 tgctgcactt cctgtatcag aataaaacac tttttgtaag cgttcaggcg tcatcgtcac
     7621 caattgttca gcaagtaaaa tggacggcac gttagatgaa ccgagtaacg ttgaatgcgc
     7681 aatctgattc agttgacgct gtatcgcacg gttgagctgt cgattttggt gaccatgaac
     7741 atttacccat aacgacgcgt aaccatctag atacttgcga cctctcgtat catacaaata
     7801 gcttcctttc cctttttcaa tgatgatagg atcttgttga ttgtacatgc ccatttgtgt
     7861 aaaaggatgc catacataat cacggtcctt ctgtactaaa gtttcatgtt tcatatgtta
     7921 tcactccttt aatttgatcg aacaacgttt cagaaaaatc tctatccgta cctgcttctg
     7981 gaaatacttc gacatgacgt cccgttattt tttcaatcgt ttgatggtta tcctgctcaa
     8041 tgggtgtatc ggtgtatcga ttcattacat ataatccttt agggagttgc atcgtcgtca
     8101 aataatgatg atgaacgagc gcatcactaa tcgcccctaa ctgtgaaggc aaaacgctga
     8161 tgacaccatc cgcgacgtca cgaatgaaat ctgctgtcat ataaaatgtc gtttcatctt
     8221 catataatgg taccccaatg cctcctgcgc cctctatgag caacacatca cattgcgcat
     8281 gccaagtctg aacccatgcc ttaattgcca tacgatctag ttgttgatgt ggttctaact
     8341 tgaatgccaa atgcggtgat actggtgctg caaacatata aaaagacgta tcagcatacg
     8401 acagaccaca cattttttga taactttcta aatcagggta cttgccatca ggtaacactt
     8461 ccgtttgaaa tggcttaata atatgcacct ttaacccttt gcgtgtcagg taatgataca
     8521 gatgggttgt cacgtatgtt tttccgacat ccgtattcgt acttgttata aacaatttca
     8581 tcgctatcac cttattcttg tcgttgtata ctgttcatat gttactgctt tcaatcctca
     8641 ttgtaaacat attttatatt taagtttaca ttttgaattt gtggccatat ttactacaga
     8701 tactatgatg tgtcgcattt attctcaaaa aaagttacat tctattatta ttagtctctc
     8761 aaaataaatg attttcatat atacaacgct tacatgagtt ttcacatatc aactcatgac
     8821 acagacagtg tttaaacctt taatgagacg attagcttta gtttcttttt gtgaaaaaat
     8881 gaattaaaaa tttatgtgta atagtaaaaa ttgacagaaa tgtgacaaac aaaaagatac
     8941 tcgaaaaaat ttgattgcaa tctgtagtaa aaacgcttac aattcaatcg atacagtcat
     9001 ctagtcataa gatgtctatt aagggaaagt tctttagggg gtcaagaaat gaatacttta
     9061 ttgatgcttg ttgcattaag tgcagtcatc acaccattta tttgtcttgt tttgttaagg
     9121 atgtccgcgc tcgttgggat gacaattagt gcgatcgtcg taacattgct aggcttttca
     9181 gtgtggggca ttgaagcagg tgtaatcggg gcatctttat tacaaggtgc acataaaaca
     9241 ttaacgatca ttttaatttt atttggcgca ttaacgctct taaatacatt acgtgaaacg
     9301 aatgccgtcg cacgtatcaa tgcaagtttc caaagtgtat ccagtgacat gcgtatccaa
     9361 gtcattatcg tcgcattttt atttggttct ttaatcgagg gggcatctgg ttttggaaca
     9421 cctgccatgg tgactgcacc tttgatggtt gcactcggct ttagaccgct tgtaagtgtg
     9481 actactgcgt taattgccga cagtatttcc gtttcattcg gagcagtcgg aacacccgtc
     9541 atcgtcgggt taagtacatt aaaaagggcc aatgagcaac tattttccga aactgcgatt
     9601 cacattacat taattgactt attcagcggt gtgttcatcc cactgattat cgtgacaaca
     9661 atgattattt tcttcgggaa atctaataaa ttaaacgccg tattagaaat cttgccatgg
     9721 acattactca tcggtgccgt gtacgcaatt gttgcttgga tctatgcttc acttactggt
     9781 cctgagttcg tctccatttt aagttcattg acaacattaa tcgttgctgt tgtaactgcg
     9841 cgtaaaggct ggctcgtccc taaaaatgaa tggacagaag ctttaacaga tgactacaaa
     9901 gtgtcagact tatcacagcc acatgaaatg agtttactgg ctgcatggtc tccttactta
     9961 atcgtagtcg tactcttatt attaacgcgt attgtagcac cggtcaaaac attgacaaca
    10021 actgtactcg acttatcttg gactcatatt ttaggttacc caaccatctc atctagttgg
    10081 caattacttt attcaccagg aacgatttta tttatcgcag ccatttttgc gattctcatc
    10141 caacgtaaat cattccgtca cttttcaaaa gcatgtaaag attcggccaa aacaattagc
    10201 gtgacaggtt tcaccctcat tgccacgtta gcgatggtac acgttttcag taactcaggc
    10261 ctcaacagta aagatttact cagcatgcct gaatttatcg cgaatgggat ggcgcataca
    10321 tttggtgata tgtggctatt cgtcgcaccg tttttaggtg cacttggctc attcattaca
    10381 ggaagtgcga ccgtttcaac attaacattc gcacctgtcc aagcgaacat tgcagatgcg
    10441 attggtgctg acctgtatac tgtcttagcc gcccaagtta ttgggggtgc agcaggaaac
    10501 atgatttgtg tgcataacgt cgtagcagtg tgtgccgttg taaatatggc aggcaaagaa
    10561 ggtagtgtca ttcgtaaaac gctcggacct gcattattat actgtgcact tgtcggtatc
    10621 agtgcatttg tattcgcaac atttttctta taacatatca aaaaagagtg ctcaggctat
    10681 gaaagtcttc ggcactcttt ttttattatt tggtttaagg agagataacg ctttacgcca
    10741 taaagtaatt atgtgaaagg gataatgtaa ccctttaaaa catctgcttc agctgtttgc
    10801 ttttcttgtt gcataaattt ttcgaatagc ttttgactga tatttgcttt tttatataaa
    10861 aattcaggct caacttgcaa gttattaagt aggctttcag gtgtcagtac ttttttggta
    10921 aaaagcatat tcaataagct attgattttt actggcttag gtaatttgat ttctgcatct
    10981 aacggttctc tttttttata acccttttta ttaattaatg accaaaagta acgatattgc
    11041 gtatctgaaa tgagacctaa ataataagca cgcatcgcca tcgcttgaat agaaacatac
    11101 catcgttctt ttaacatcac gaaatgatca ggatttgatt tctttttaac ttgattaaaa
    11161 gacgcgataa attgcttttc gggtaataaa aattcagccg caaaaatatc tgcttctttt
    11221 tcgatgcgtt gaaaatcttc gtgtgacaac atatcaaatt caatttgacg atgaagtaac
    11281 aaatgaccta actcatgtgc taaatcaaaa tgtcttcgaa cagcaacacc cttgttatta
    11341 gacaaaataa taaatggtac ttgatatttt gaccaaaaac tatacgcgtc ggcatcatca
    11401 gttaaatctt tttcataaat gtaaacccca aacttttcta atgctaataa cagctgatgg
    11461 ttcgattggt caccgagtat catttcccgc gcgtcatttg caatcaattg aatacgcact
    11521 cttgcatcga tattctgtga aaaataacgg tcaatcttac ttactaaagt taatatcgga
    11581 aggtgaggtt gcttcacata tgccgataaa tgactagtca attgcgcata aaagtttgct
    11641 tgtgcatggt tctgacttaa aattttcgtg cttgtccttt gatttttaga ccgaaaagca
    11701 atcgagtgcg tatcaactgc cgttatacta aataattctt gttttggtga gaagaagaac
    11761 tttgttttta cattgaattt ttgcgccaaa gtatatattt tgttgatttc aggcatcatg
    11821 ttttgttctt catactgcca aactgcttgt tctgaaactt gtaatacgtc tgctaatgat
    11881 ttacgactgt atccttcaat cattcttaac gctttaaggt tctcaccttt aaacataata
    11941 tttcacgctt cctttaatta taaatcactt tctttgattt cttcaatttc aaacccaaac
    12001 acttctgtat ctatccattc tacatcttct cggtcttgtt ttaaaacttc aatttcctct
    12061 tcattgattt gatagtgttc atcatttttt ataacatcat tcatttcttc tgttaaattt
    12121 aaaaattcga tagcactgta agtcattgga tttggtatcc aaacctttat ttcttttaac
    12181 atttttgatt ggtgatcaac atcataagta atcataataa atttgatttt gtcgcttgag
    12241 tcattgttta tcatatcgaa aagcatttta tctgcattaa gttgatggtt aacatgtaat
    12301 gattggttta gcttttcaaa atcaacaccg cggttcaact ctattaattc agtcaaatat
    12361 ttcttttctg gaggttcacc accattatga atcaatcttc tacccttatt gactttatcc
    12421 ttattaaaag ttctaccact tactactaca aaatgaaaaa tcttttcgtg atgtttgtcg
    12481 gtcgggctaa ataataaaaa cttccatgaa ggtcctgcac tacgtcttgt attttccaca
    12541 aaattctcgg tatgaagcgc aacgtggtga tcaatataat tcgctttagt aaatgcataa
    12601 ccattactta cttttaattt tttatgcgct tcatttctta cttctacata ttccttatag
    12661 cctgcgacaa ttccttttac aatagatagc ttcaattgat gattaaattg tgacataaaa
    12721 tcaactccta atcgataact aactta
//
LOCUS       DANHOL010000065        12722 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.065, whole genome shotgun sequence.
ACCESSION   DANHOL010000065 DANHOL010000000
VERSION     DANHOL010000065.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 12722)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12722)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12722
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.065"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            <1..334
                     /locus_tag="PTC08_001337"
     CDS             <1..334
                     /locus_tag="PTC08_001337"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682850.1"
                     /translation="KFYEYPEPSDMTKPYIVMSEIDDTLPVEYADNDNMALSYLVQID
                     VFVPESEKYQAYFVRNKVSYHISRLMKEELKMENTSNAKPEYDEESKMYRSARRYEGT
                     FYRTELNL"
     gene            347..970
                     /locus_tag="PTC08_001338"
     CDS             347..970
                     /locus_tag="PTC08_001338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDK5682851.1"
                     /translation="MTKKYNSFTGITGFYYMPLNTGEVLGGKEPERIKYLQEVQVSKE
                     QSIEKAYGDNSVAELAVSNGTVELESTFHHLPIEDREVLFGLDKSSDGVIGVGNNTPP
                     YVAVIFEKTTETGASEYVGLLKGMFTFPEVSGQTKEDGVEFSQDKSTAEFMPAEVEGF
                     EKEQTMLLGRDEKGVTVMRDAIWKKVFGKEHPNKSVSEDLDSDDLSA"
     gene            992..1171
                     /locus_tag="PTC08_001339"
     CDS             992..1171
                     /locus_tag="PTC08_001339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682852.1"
                     /translation="MTKYEVLKTFKDLQDNDKLYEKGKTYPRPANKKVDEERILELSS
                     SDNRQRKPLIKKIED"
     gene            1231..1602
                     /locus_tag="PTC08_001340"
     CDS             1231..1602
                     /locus_tag="PTC08_001340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002456406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682853.1"
                     /translation="MAKKINFIKLVVLDSEGNAKEDKNGNFEVETHFTPNFIPFRKIY
                     EATDIMEGTSEDGSELTEKEMFKRMTDFVVDVYNNQFTSDDLLDRLHAPDAVEEIKSQ
                     VQFIAQGQMDEQRKKQLAKMI"
     gene            1822..6768
                     /locus_tag="PTC08_001341"
     CDS             1822..6768
                     /locus_tag="PTC08_001341"
                     /inference="COORDINATES: protein
                     motif:HMM:NF013700.1,HMM:TIGR01760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HDK5682854.1"
                     /translation="MAERIKGLQIDLSMQDMGIGSTLAGIKRSFKQLNSDLKLSSNNF
                     KYSEKSMTSYKNRIRELDAATKQQRNNVKELRKQYEQMVKDKGANNAAAVRLRTEYNK
                     QADTLNRLEHELEQTVDGFKRFQKEAQEAARVSNSSFGRLGQKFTDIGPKLTSVGESM
                     KSVGRSMSMYVTAPVVAGFGLAAKKSIDFDDSMRKVKATSGATGKEFNLLRDKALEMG
                     AKTKFSASESADALNYMALAGWDTKEMMSGIDGVMQLAAASGEDLAQVSDIVTDGLSA
                     FGLKAKDSSHFADVLAQTSSKANTDVTGLGEAFKYVAPVAGSFGFSVEDTSIALGLMA
                     NSGVKASQAGTALKSMMTKLAKPTGEAKKTMESLGISITDSEGKMLPFRDIMDQLRGS
                     LGGLSKAQQSAAVKTLFGQEAMSGILPIINASDEDYQKLTKSIDNSAGASKRMSDEME
                     GGIGGSIRKMKSAIESMAISIGDVLAPHIRRAADFLAMLADKFTSMSGWVKTGVVGLG
                     VFAAALGPLILTTGMFTAALGSIMTTLGPLMTGIVKAGGLMNFLGTKAPFAAKGLTLV
                     GGAFKFMLGPVGLAIAAVVAIGTAFVVAYKKSETFRNIVHTVIDPVVNAFKNLWNTAK
                     EVFNALKSLFSGNSLPTVDLLSKIMPKATANRVTVNLMKVRQTFINVFNAIWNFGREI
                     GGKIASFWKQNGDDVIQAFVNIGNFFKGFFIELRNLIGPNLRELGTLVKTIFTNIIVP
                     TIQIAMKVIWEVMKFLWPLIKTLIVDTWNNIKNIIKGALDVILGIVKIFSGIFTGQWG
                     QVWNGVKQIFSGALTLIWNLVQLWFIGKILKVVKLFGGFFKSAISTAFNGVKSVIATV
                     LKFIWSIISSIFKCILSITKLIFNGIWTFIKFVWNGIKNAISNAVKFIFNAVKRYFTA
                     VKNTTSTIFNAVKSYISKLWTGIKNIVSSIVRSLWSSVKNTWNTLYSGTRGIFNKVKS
                     WITNLWNSIKRTVSKIASNLWSSIKRTWNYLWSGTRNIFNRVKNSIVNVWNSIKRSVT
                     GIASSLWNGVRRIFTNMSNGLRGIIGRIKGHIGGMISKIKSGLNSLIRGLNWVGSKLS
                     LPKIPTLSTGTVHNQQINRSVKTTSDGRMKQDTMAIVGDKGPGNGKGRDGRRELIQYP
                     NGRTALTPAKDTPTIIPKGGRVISGGIRQQMANSGTLPKLNAGTWFSKAGSWIGSKMR
                     SAGDWLKDRLGDVLDFVGKPSKLLNKLLSSLGIDFGSLTKGMGIVGQITRGAWNKIKD
                     GAIKWLKGGLDSAGGDIKGGILDPRLINYHFGHTAAYTAATGRPFHEGVDFPFVYKTI
                     RTPMGGKVARQSFMHGGYGNWVKVISGAMEMIFAHLRDFSKTPPSGKTVKAGDVIGLT
                     GNTGFSTGPHLHFGIRKNGRDVDPEPYLWRAQRQGRLKVSGKGGGGLGRIAETVKTAL
                     NQTGLPTTKRFVDFWSKKINEKDGTGLLDISKSTFNAFKAKGHDKYNNTLDNLMAGMR
                     YAKVNYGSSLLDKAKRFASGGFIKNSGWYNLAEGGYPEYVISTDPALYSDSMKLLALA
                     AQDIDSGKTSGNKRPGQLPRINSNDNTELLLKMIENQQQQINVLMEIARSNQVVSEKD
                     FELVVDDDSFERRHNRYQDKRERRERKSNMYRGGAFAT"
     gene            6765..8273
                     /locus_tag="PTC08_001342"
     CDS             6765..8273
                     /locus_tag="PTC08_001342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail family protein"
                     /protein_id="HDK5682855.1"
                     /translation="MTNETIIVNNKKIDWLIVERGFEIPSFNFATETEKVPGRAGGIV
                     SSRELNGYEFDLPLIARNDYLVGRKNHDEILNELTKFFNYNEPVKLQLSKKNWFWYAY
                     FDGPIEVVSINNGFVQFKIQVVLTDPYKYSATGNKNTAISDSISVVNAGTADTSIIVE
                     ARALKDSTNFIIAKDERNYFMIGKSEDANKVTKDVEPFVFNDEFHTTGLSNWRYMPND
                     TSFGNLLDGGDAMGGKFKLSKERESIYPENWGNNTQTNWHGPAIYKSLTKSVQDFRIR
                     FKVSIHQGLGIGTGKAVAFLVDENNRTLFSITYVNTSATTNNSQILVYAYNEHNEARR
                     IYKRDVPQQLKRLKNIHAFIFLERKGTNLKVTTYFYDINKDPDRKKPLNKDERITVDR
                     GNLYQRPARIARLYRGKAAKYSKYLWHSILAFKIQELLPKQSDVTPIEIREGDLIQID
                     MHRKSVTINDEDALSLKDFGSNYFNVDTGVSELVVYPSETFDTTVKWQDRYL"
     gene            8289..>12722
                     /locus_tag="PTC08_001343"
     CDS             8289..>12722
                     /locus_tag="PTC08_001343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HDK5682856.1"
                     /translation="MIHVLNFNSQIIDFISRDDNAVTIAKYHKTKDNDLLDIRILSQR
                     AEHFKKRNRIIIQDKNDVYREYIIDRAEENGRYVDVECTASHIVDISTSKPIPPGKYE
                     KMTINQKLSETLRDSGWVVGDCDYAGLKTNSWTSVRTPLEMISQLETAHEVQADYEIE
                     IDGYEVVERRVNMKIPAPLFKGKEIEYGKDLLSMKRVIDFSEVKTALFALGPEPEQGK
                     RVETFVYDDEAQEQFDLPYRYIWGVYEPETEDDNMSLQRLTTLAKTELNKRKSAAVSY
                     EISVVDIEKEFPHEVIRYGDIVRIKNPDFTPTLYAESEVVGIEHDLISNKCTYEFGKV
                     VEYQEDDLLRYFRNRLGYFNQKFNDKFSNVNTIVRESLEGELQYFERKILKGDTPPEN
                     PINDLLWLDTSNTKVPVLRRYFNGEWIKSSAENASDVGAITREQAMYSGLSNTFINLT
                     IQHSRLLKEVSEIVESEYFVDVELKKEVNDKLNATVDVFNHIKTNLDSMNEETATIGK
                     LIDTQALFVDYREKMQSLYNAVENAKIAIDERFKLLQSQYTDEKFNEAMEKVASALPN
                     GHWDSDNKQLTSDVPNEARLKEIEKVLKENVSELDKTLKNYTDSAVLKTRNELSASVR
                     DIDEKVENLQFGGRNLLLGTNDLLKFVRMVGAKGDRSLESSETSRTGNMVKVTNIVRT
                     SSSSVVGFNFKDIAPLFGVDLEEYVLSFYLKTNSEQKVNFLAYNTETISVTPKLISDK
                     FQRVIIRLRPKALKKDVPHHNGNLYLVGENLTDLWIYDIKLEKGLIPTDWTPAPEDTE
                     NAINNVSNSLEPIKIRTTKAENSIKVLQDSLLLTATKTDVQRTLDEQLNPLKNEVNEQ
                     KAQLQIMSNSIDSKVSQSEYTSNLQGVVERLDNAETHRQQLSNQITDRVTLNDYNSGI
                     DSMKQYADEQVNNLTLGNVNLIKSYKSPEYLKTATVKDDYSLLFSTTGKTINIFFYDT
                     NGYTNVPLEANTDYILKLHEADENIEMGVFYNKGRNIIKTYTKDRIIRFNTGDKEDFR
                     IILIARDANVRAGKLSLYKGTKDLDWTPNPEDVQKNIDNAETNAKQYADALKQQQDKV
                     LTTYDTRITQNGKDIEQRATKEEYNASKQLLDKTIAQVVTSAVNGVSLSYNDNGTISD
                     LVLNDQGVSLNSSLININQGDVVIENGVTTIKNLSSEKIKVAFNNISTSLSMTGNGLE
                     TWENGQMTSLLNGGGHHFYNNTFYVGYIGTSVLTVDSYTRGLSLSLQGAGNFMAFTYS
                     KDKTNPDDASNVAMMWSKGIPGYRQGFFYNEDIVIRDTRVLETAYLRPYGMEPKYRLM
                     FSGRVLEKQEGVGIQYNSVNGSGIHFSNASINIISKTKDGGWQGMNVAGDYITSNAIY
                     NRTYSSASNVYITSYGTLGRSTSASKYKLSQEKQFNDEEQQYNHSKKILNLDIKTWFD
                     KFEAETYAREILTGERQENENFKLKRYAGLIAEDVESVGLKE"
BASE COUNT         4553 a         1919 c         2655 g         3595 t
ORIGIN      
        1 taagttctat gaatatcctg aaccgtcaga tatgaccaag ccatatattg tgatgagtga
       61 aattgatgac acattacctg tcgaatatgc agacaatgat aatatggctt taagctatct
      121 tgtacaaatt gatgtgtttg tacctgaatc tgagaagtat caagcatatt ttgtaaggaa
      181 taaagtcagt tatcacattt cgcgattaat gaaagaagaa ttgaaaatgg aaaacacatc
      241 aaatgcaaaa ccggaatacg acgaagaatc aaaaatgtac cggtccgcgc gaagatacga
      301 ggggaccttt tatcgtactg aattaaattt ataggaggaa ttaagaatga caaaaaaata
      361 taactcattt acaggtatta caggatttta ctatatgcct ttgaatacag gagaagttct
      421 ggggggcaaa gaaccagaac gcattaaata cttacaagaa gtacaagttt caaaggaaca
      481 atctattgaa aaagcgtatg gggataacag tgttgctgaa ttagcagtat ctaacgggac
      541 tgttgaatta gaatctacat tccatcattt accaatcgaa gatagagaag tattatttgg
      601 acttgataaa tcaagtgatg gtgtgattgg tgtaggtaat aatacgccac catatgttgc
      661 ggttatcttc gaaaaaacga cagaaactgg cgcatctgaa tatgttggat tattaaaagg
      721 tatgttcacg tttcctgaag tttctggtca aacaaaagaa gatggtgttg aattctctca
      781 agataaatct acagctgaat tcatgcctgc tgaagttgaa ggctttgaga aagaacaaac
      841 tatgcttctc ggtcgcgatg aaaaaggtgt aactgtcatg cgtgatgcaa tttggaaaaa
      901 agtttttggt aaagaacatc caaataagtc agtttccgaa gatttagatt cagatgatct
      961 tagcgcttaa tcttttagga ggtaatagtt aatgactaaa tatgaagttt taaaaacatt
     1021 taaagattta caagataacg ataaattgta tgaaaaaggt aagacatatc cccgtccagc
     1081 taataaaaag gttgacgagg aacgtattct tgaactttct tcaagtgaca atcgtcaacg
     1141 taaaccacta atcaaaaaga ttgaagatta attttgaggg cattgcgccc tctttttatt
     1201 tgcaaataaa aatttaaagg agttttacac atggctaaaa aaatcaattt tattaaatta
     1261 gtagtattag atagtgaagg taatgcaaaa gaagataaaa atggtaattt cgaggttgag
     1321 acgcatttta cacctaactt tatcccattc cgtaaaattt atgaagcgac tgacattatg
     1381 gaaggtacgt ctgaagacgg tagcgaacta acagaaaaag aaatgtttaa acgcatgact
     1441 gattttgttg ttgatgtata taacaatcaa ttcacaagtg acgatttatt agatcgttta
     1501 catgcacctg atgcggttga agaaatcaaa tcacaagttc aatttatcgc tcaaggtcag
     1561 atggatgaac aaagaaaaaa gcaattagcg aagatgattt aaagaataaa gtcatcacat
     1621 gggctgaaca caaacgaaat ttaaaaaaag tagcatacga catgatgaaa gagggcggaa
     1681 aagatatcaa cgatatcttg gacatgccct tttctttttt tatggacgtt attgaggatg
     1741 gtagaaagcc tgtcaaacaa gttgataaga aagatagcat gttagatgca ttcaccaatt
     1801 tataagtaag gaggtggaag aatggcagaa agaattaagg gtttgcagat tgacctatct
     1861 atgcaagata tggggattgg ttcaacactt gcaggtatta agcgcagttt taaacaatta
     1921 aattctgact tgaaattgtc gagtaacaac tttaaatatt ccgagaagtc tatgacaagt
     1981 tataaaaata gaatacgaga actagatgct gcgacgaaac aacaacgtaa caatgttaaa
     2041 gaattgcgca agcaatatga acaaatggtt aaagataaag gagcgaataa cgctgctgct
     2101 gttaggttgc gtacagagta caataaacaa gcggatacat tgaatagact tgagcacgag
     2161 ttagaacaaa ctgtagatgg cttcaaacga tttcaaaaag aagcgcaaga agcagctaga
     2221 gtatctaata gtagtttcgg tcgattggga caaaagttta ctgatatagg accaaaactt
     2281 actagtgtcg gtgaatcgat gaagagtgtt ggtcgttcta tgtcgatgta tgttactgct
     2341 ccggtcgtag cgggttttgg acttgccgca aagaaaagca tagactttga tgactcaatg
     2401 cgtaaggtta aagcgacatc aggggcaact ggtaaagagt ttaatttatt aagagacaaa
     2461 gcacttgaaa tgggtgctaa aactaaattt agtgctagtg aatccgcaga tgctctgaac
     2521 tacatggctt tggccggctg ggataccaaa gaaatgatga gtggtattga cggtgtcatg
     2581 cagttagcgg ctgcatctgg cgaagattta gcgcaagtca gtgatattgt tacagatgga
     2641 ttgagcgcat tcggcttaaa agcaaaagac agtagtcatt ttgctgacgt acttgctcaa
     2701 acaagttcca aagcaaatac tgacgtaaca ggattaggtg aagcgtttaa atatgttgca
     2761 ccagtagcag gttcgtttgg attttctgtg gaggatacct caatagcact ggggttaatg
     2821 gctaattcag gagttaaagc atcgcaagct ggtacggctt taaaatccat gatgactaag
     2881 ttagcaaagc caactggtga agctaaaaag acgatggaaa gcttgggtat ttcaattact
     2941 gatagcgagg gcaaaatgtt acctttcagg gatatcatgg atcaattaag agggagttta
     3001 ggaggattat ccaaagctca acaatctgca gctgttaaaa ccttatttgg tcaagaagca
     3061 atgagtggta ttttgcctat tattaatgcg tcagatgaag attatcaaaa gttaactaag
     3121 tctattgata attccgcagg agcaagcaaa cgtatgtcag atgaaatgga aggtggcata
     3181 ggcggttcta tccgtaagat gaagtcagcc atcgaatcga tggcgattag cataggggac
     3241 gttttagcgc cgcatattag aagagcagct gattttctcg ccatgctagc ggataaattc
     3301 acaagtatgt ctggctgggt taaaacaggc gttgtagggc ttggcgtatt cgcagccgca
     3361 ctaggaccat taattttaac aacaggaatg tttacagctg cattaggtag cattatgaca
     3421 acgttaggtc cattgatgac tggaatcgtt aaagctggtg gtttaatgaa cttcttaggt
     3481 accaaagcac catttgcagc taaaggttta actcttgtcg gtggagcatt taaatttatg
     3541 ctcggaccag tcggattagc tattgcggca gttgtagcaa ttggtacggc gtttgtagta
     3601 gcttataaaa aatctgagac atttagaaat atcgttcaca cagtgattga tccagtcgtg
     3661 aacgcattta aaaatctttg gaacacagct aaagaagttt tcaatgcttt aaaaagtctt
     3721 ttttcaggga attctctacc cacagtcgat ttactgtcta aaattatgcc taaagccaca
     3781 gcaaatagag ttacagtaaa tttaatgaaa gttagacaaa cttttataaa tgtttttaac
     3841 gctatatgga atttcggtcg agaaataggt ggaaaaattg cttctttttg gaaacaaaac
     3901 ggcgatgatg tgattcaagc attcgtaaat atcggcaact tcttcaaagg gttctttatc
     3961 gaattgagaa acttaatagg tcctaattta agagagttag gtactttagt taagacgata
     4021 tttaccaata ttattgtgcc aacaatccaa atagcgatga aagttatttg ggaggttatg
     4081 aaattcttat ggcctctcat taaaacacta attgtagata cgtggaataa catcaaaaat
     4141 atcatcaaag gtgcgctaga tgttatctta ggtatcgtca aaatatttag cggaatcttt
     4201 actggccaat ggggtcaagt gtggaacggt gtaaaacaaa tattcagtgg tgcattgact
     4261 ctaatatgga atcttgttca attatggttc attggtaaaa tactaaaggt tgttaaattg
     4321 ttcggaggct tctttaaaag tgcaatcagt acagcattta atggtgttaa aagtgtaata
     4381 gcaactgtgt tgaagtttat atggtcaatt attagttcta tatttaaatg tatattatca
     4441 atcacaaaat taatttttaa cgggatatgg acattcatta aatttgtatg gaatggtatt
     4501 aaaaacgcta tatcgaatgc agttaagttt atatttaatg ctgtgaagcg ttattttaca
     4561 gcagttaaaa atacaactag cactatcttt aatgcagtta aaagttatat ttcaaaactt
     4621 tggacaggca taaagaatat agtttcgagt attgtaaggt ctttatggtc ttccgttaaa
     4681 aacacatgga atactcttta tagtggaaca agaggtattt ttaacaaagt aaaatcatgg
     4741 attacaaatt tatggaactc tataaaaaga acagtgtcaa aaattgcttc aaatttatgg
     4801 agctcaataa aaagaacttg gaattatttg tggtcaggaa ctcgaaatat ttttaatcga
     4861 gtgaaaaata gtattgtaaa tgtttggaac tctataaaac gttctgtcac tggtatcgct
     4921 tcaagtttat ggaatggcgt tcggcgtatt tttactaata tgtcaaacgg tttacgcggt
     4981 attataggga gaatcaaagg ccatattggt gggatgataa gtaaaattaa gagtggctta
     5041 aatagcttaa ttagaggatt gaactgggta ggttcaaaat taagtttacc taaaattcct
     5101 acactctcaa ctggtacggt tcataaccaa caaatcaata gaagtgttaa gactacttct
     5161 gatggacgta tgaagcaaga tacaatggct atagtaggag ataaaggtcc tggcaatggt
     5221 aaaggtcgtg atggtagacg tgagctgatt caatatccaa atggtcgcac agctttaaca
     5281 cccgcaaaag acaccccaac catcatccct aaaggtggac gtgttataag cggtggcatt
     5341 cgtcaacaaa tggcaaattc gggaacgttg cctaagctta atgcaggaac gtggtttagt
     5401 aaagctggta gttggattgg aagtaaaatg agaagtgccg gcgattggtt gaaagatcga
     5461 ttgggcgatg tcctagattt tgtaggcaaa cctagtaaat tattgaataa acttctatct
     5521 tcgttaggta ttgatttcgg aagcttaact aaagggatgg gtattgttgg tcaaatcacg
     5581 cgtggcgctt ggaacaaaat taaagatggc gctattaaat ggttaaaagg cgggcttgat
     5641 tcagccggtg gagacatcaa aggcggaatt ttagaccctc gattgattaa ctatcatttt
     5701 ggccacactg ctgcatatac agccgctaca ggtcgcccgt tccatgaagg tgttgacttc
     5761 ccgttcgttt ataaaactat acgcacacct atgggcggta aagtagctag acaatcgttt
     5821 atgcacggcg gatatggtaa ttgggttaaa gttataagtg gtgcaatgga aatgatattc
     5881 gcccatttga gagattttag taaaacacca ccaagcggta aaactgttaa ggcaggagac
     5941 gttatcggcc ttactggtaa tacaggcttt agtacaggac cccacttgca ttttggtatt
     6001 aggaaaaacg gccgagatgt tgaccctgaa ccatatttat ggagagctca aaggcaaggt
     6061 cgtttaaaag tgagcggaaa aggtggcggt ggtctagggc gtattgctga aaccgtcaaa
     6121 acggcattaa accaaaccgg acttcctaca actaaacgat ttgtagattt ttggtcgaag
     6181 aaaattaatg aaaaagatgg tacgggctta ttagatataa gtaaatcgac attcaatgcc
     6241 ttcaaagcta aaggtcacga caaatataat aacactttag acaacttaat ggcgggcatg
     6301 cgatatgcta aagttaatta tggaagtagt ttattagata aggctaagcg cttcgctagt
     6361 ggaggattta tcaaaaattc aggttggtat aaccttgctg aaggtggtta tcctgaatat
     6421 gtaatctcca ctgaccctgc tttatatagt gattcgatga agttacttgc tttagcagcg
     6481 caagatattg acagtggtaa aacatcaggt aataaacgac ctggtcagct accacgcata
     6541 aattctaatg ataacactga attgttatta aaaatgatcg agaatcaaca acaacaaatt
     6601 aatgtactaa tggaaattgc acgtagtaat caagttgttt cagaaaagga ctttgaactt
     6661 gtcgtagacg atgattcatt tgaacgtcgt cataatcgtt atcaagataa acgagagcgt
     6721 agagaacgga agtcaaacat gtatagaggt ggtgcattcg caacatgaca aatgaaacaa
     6781 tcattgtaaa taataaaaaa atagactggc ttattgttga acgagggttt gagataccct
     6841 cgtttaattt tgccacagaa actgaaaaag ttcctggccg agcaggtggt attgtgtcgt
     6901 ctcgtgaatt aaacggctat gaatttgatt tgccactgat tgctagaaat gattatttag
     6961 taggtcgaaa gaatcatgat gaaatactta atgagctaac aaaatttttt aactacaacg
     7021 aaccggtgaa attacaacta tctaaaaaga attggttttg gtatgcgtat ttcgatggcc
     7081 ctatagaagt tgtaagtatt aataatggtt ttgtgcaatt caaaatacaa gtcgtactta
     7141 ctgatccata caaatattca gctacaggta ataagaatac agctatttct gattcgattt
     7201 cagttgtaaa tgcaggtact gcagatacat caataattgt agaagcaaga gcgttaaaag
     7261 actctactaa tttcattatt gctaaagatg aacggaatta ttttatgatt gggaaatcag
     7321 aggacgcaaa caaagtcaca aaagacgtcg aaccatttgt attcaatgac gaatttcata
     7381 caactggttt aagtaattgg agatatatgc cgaatgatac gtcttttggg aatttgttag
     7441 atggcggcga cgctatgggt ggcaaattca agttatctaa agagagggag agtatatatc
     7501 ctgaaaattg ggggaataat actcaaacaa actggcatgg acctgcaata tataaatcgc
     7561 taactaaatc agttcaagac tttagaattc gtttcaaagt ttctattcat caaggtttag
     7621 gaattgggac aggtaaagcg gtcgcatttt tagttgatga gaacaatcga acattgttta
     7681 gtattactta tgtgaatacg agtgcaacga ctaataatag tcaaatcctt gtgtatgcat
     7741 ataacgaaca caatgaagcg cgtcgtatat acaaaagaga tgtaccccaa caattaaaac
     7801 gtcttaaaaa catacacgct tttatatttt tagagcgtaa aggtacaaac cttaaagtga
     7861 ctacttattt ttatgatatt aataaagacc cagacagaaa aaaacccttg aacaaagatg
     7921 agagaatcac agttgacaga gggaatttgt atcaacgtcc tgcaaggatt gcacgtttat
     7981 atcgtggtaa agcagctaaa tatagtaagt atttatggca tagtatcctt gcatttaaaa
     8041 tacaagaatt attgcctaaa caatctgatg ttacaccaat tgaaatcaga gaaggtgatt
     8101 taatacaaat tgatatgcat agaaagtctg taacaattaa tgacgaagat gcgcttagct
     8161 taaaagattt tggttcaaac tactttaatg tagacacagg cgtatcagaa ctagtagtat
     8221 atccatctga aacttttgat acgaccgtaa aatggcaaga tagatactta tagaaaggag
     8281 gacaaatcat gattcacgta ttgaatttca atagtcaaat tatcgatttt atcagccgtg
     8341 atgataacgc tgtaactata gcaaaatatc ataagacgaa agacaacgat ttgcttgata
     8401 tacgcatttt aagtcaacgt gcagaacatt ttaagaaaag aaatcgtatc atcattcaag
     8461 ataagaatga tgtatatcgc gagtatatta ttgatcgcgc tgaagaaaat ggcagatacg
     8521 ttgacgtaga gtgtacagca tcacatatag ttgatatttc aacttctaaa ccaattcctc
     8581 caggaaaata tgaaaagatg acgattaatc agaagttatc tgaaactttg agagatagcg
     8641 gttgggttgt cggtgattgt gattacgcgg gactaaaaac aaattcttgg acgtctgtac
     8701 gaacgccgtt agaaatgatt agtcaacttg aaacagctca tgaagtacaa gcagattatg
     8761 aaatcgaaat cgatggttat gaagttgttg aacgtcgtgt aaatatgaaa ataccggctc
     8821 ctttatttaa aggtaaagaa atcgaatatg gtaaagactt attaagcatg aagcgcgtta
     8881 ttgatttttc ggaagttaaa acagcgttat ttgcgcttgg tcctgaacct gaacaaggaa
     8941 aaagagtcga aacatttgtt tacgatgacg aagcgcaaga acagtttgat ttaccttatc
     9001 gctatatttg gggtgtatat gaacctgaaa cagaagacga caacatgtcg ttacaacgac
     9061 tgacgactct cgctaaaact gaacttaata aacgcaaatc agcagcagta tcgtatgaga
     9121 ttagtgttgt tgatattgaa aaagaatttc ctcatgaagt gataagatat ggtgatattg
     9181 taagaatcaa gaatcctgat tttacaccta ctttgtatgc agaaagtgaa gtcgtaggca
     9241 tcgaacatga cttgattagc aataagtgta cttacgaatt tggtaaagtc gtcgagtatc
     9301 aagaagatga tttattacgc tatttcagaa acagattagg ctactttaat cagaaattta
     9361 atgataaatt cagtaacgtc aatacaatcg ttagagaaag cctcgaggga gaactacagt
     9421 attttgaacg taagatatta aaaggtgata caccaccaga gaatcctatt aacgatttac
     9481 tatggttaga cacgagcaat actaaagtgc ctgtattacg tcgttacttt aacggtgaat
     9541 ggattaagtc atcggccgaa aacgcttctg atgtaggagc tattacacgt gaacaagcga
     9601 tgtatagcgg gttgagtaat acattcataa acctaactat tcaacatagt cgactattaa
     9661 aagaagtttc ggaaattgtt gaatcagaat actttgttga tgttgagttg aaaaaagaag
     9721 ttaatgacaa gttaaatgct actgttgacg tgtttaacca catcaaaaca aacctcgaca
     9781 gtatgaatga ggaaacggca acaattggaa aacttatcga tacacaagca ttatttgtag
     9841 attatcgtga aaaaatgcaa tccttatata acgctgtcga aaatgcaaaa attgcaattg
     9901 atgagcggtt taaacttttg caatcacaat atacagacga aaagtttaac gaggcgatgg
     9961 aaaaggttgc cagtgcgtta cctaatggac attgggattc tgataataag caattaacaa
    10021 gtgacgttcc aaacgaagca agattaaaag aaattgaaaa agttttaaaa gagaatgtaa
    10081 gtgaactcga caaaactttg aaaaactata ccgatagcgc agtactgaaa acaagaaatg
    10141 aattaagcgc cagtgtgaga gatatagacg aaaaagttga aaatcttcag tttggaggta
    10201 gaaacctact tttaggaaca aatgatttgc taaaattcgt gagaatggta ggagcgaaag
    10261 gcgataggtc tttagagtcc tctgaaactt ctcgaacagg gaatatggta aaagttacta
    10321 atattgtcag aacgagttca agtagtgttg ttggttttaa ttttaaagat atagcaccat
    10381 tgtttggagt agacctagag gaatatgtgt tgagtttcta tttaaaaaca aatagtgaac
    10441 aaaaagttaa ttttttagca tataacacag agacgataag tgtaacacct aaattgattt
    10501 cggataaatt ccaaagagta atcattaggt taagacctaa agcactaaaa aaagacgtac
    10561 cacaccacaa cggtaattta tatctagtgg gcgaaaattt aacagattta tggatttacg
    10621 atattaaact tgaaaaaggt ttaataccta ctgactggac acctgcgcca gaggacacag
    10681 aaaatgccat aaataacgtt tcaaattctt tagaacctat caaaattcgc acgacaaaag
    10741 ccgaaaacag catcaaagta ctacaagata gtttactact aacagcaaca aagacggacg
    10801 tacaacgcac gttagacgag caattaaatc cgttaaaaaa cgaagtgaat gagcaaaaag
    10861 cacaactaca aatcatgtca aactcgattg atagtaaagt gagtcaatct gaatatacat
    10921 ctaatttgca aggtgtggta gaacgtctag ataatgctga aacacatcgt caacagttaa
    10981 gtaatcaaat taccgataga gttactttga acgattataa cagtggtatt gatagcatga
    11041 aacaatatgc tgacgaacaa gttaacaatt taactttagg taacgttaac cttatcaaaa
    11101 gctataagtc accagagtat ttaaaaacag caacggttaa agatgattat agcttacttt
    11161 tttcgacaac aggaaaaact atcaatatct ttttttatga tacgaatggt tatactaacg
    11221 tgccgctcga agcaaatact gactacattt taaaattaca tgaagctgat gaaaatattg
    11281 aaatgggtgt cttttacaat aagggacgta acattattaa aacgtacaca aaagacagga
    11341 taatacgttt taatacgggt gataaagagg actttagaat tatattgatt gcacgtgatg
    11401 caaatgttcg tgctggtaaa ttaagtctat ataaagggac aaaagattta gactggacac
    11461 ctaatccgga agatgttcaa aaaaatatag ataacgctga aacaaacgca aaacaatacg
    11521 cagacgcact caaacaacaa caagataaag tattgacaac atatgatact cgtatcacac
    11581 aaaatggtaa agatattgaa caaagagcaa caaaagaaga atataatgcg tcaaaacagt
    11641 tgctagataa aacgatagcg caagtcgtga ctagcgcggt caatggggtg tcgttaagtt
    11701 ataacgacaa cggcactatt tctgatttag tgttaaacga tcaaggcgta tcattaaact
    11761 ctagtcttat caatatcaat caaggtgacg tagttataga aaatggcgtt actacaatta
    11821 aaaacttgtc atcagaaaaa ataaaagtag catttaataa tattagtaca tctttgagta
    11881 tgactggaaa tggcttagaa acatgggaaa atggacaaat gactagtctt ttaaatggcg
    11941 gaggacacca cttttacaat aatacttttt atgttggata tattggcaca tcagttttaa
    12001 cggtagacag ttatacaaga ggcttgagtt tgagtttgca aggtgcaggt aatttcatgg
    12061 cgtttactta tagcaaagac aaaacaaacc cagacgacgc atcaaacgta gcgatgatgt
    12121 ggtcaaaagg aattccaggc tatcgtcaag gattctttta caatgaagat atcgttataa
    12181 gagacacacg agttttagaa actgcttatt taagaccgta tggaatggaa ccaaaatata
    12241 gactaatgtt ttcgggtaga gtgctggaga aacaagaagg cgtcggcatt cagtacaata
    12301 gcgttaatgg atctggcatt cacttttcta acgcgagtat caatataatc tctaaaacta
    12361 aagacggcgg atggcaaggg atgaacgttg caggagacta tatcacttct aacgcaattt
    12421 acaacagaac atattctagt gcctcgaacg tatacatcac ttcttatgga acattaggac
    12481 gttcgacatc agctagtaaa tataaattat cgcaagagaa acagttcaac gatgaagaac
    12541 agcaatataa ccattctaag aaaattttaa atttagatat taagacatgg tttgataaat
    12601 ttgaagctga aacgtatgct cgagaaattt tgacaggtga acgtcaagaa aacgaaaatt
    12661 ttaagctaaa aagatacgca gggttaatcg ctgaagatgt tgagtcggtt ggacttaaag
    12721 aa
//
LOCUS       DANHOL010000066        12599 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.066, whole genome shotgun sequence.
ACCESSION   DANHOL010000066 DANHOL010000000
VERSION     DANHOL010000066.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 12599)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12599)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12599
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.066"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            103..735
                     /locus_tag="PTC08_001344"
     CDS             103..735
                     /locus_tag="PTC08_001344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YkyA family protein"
                     /protein_id="HDK5682857.1"
                     /translation="MKFHKTIGVAVATTFLLAACSKDGEHIEKYNDGLENMQKAETPI
                     QEVNKEMNKLEKEKEKLSKEISGKNIAEVQDKVDQVLDNAKKREKQLKKEVEAMNHSK
                     KAFEKAKAESNKIEDEDDKKEFDELNKAIEEKNKKHDAFVKGYQDVINKEKDLFSYFK
                     EDSGSQEEVDKRSKALSDVQKNMQKKVEDYTKAIRKVQTEKQDVDEIANK"
     gene            899..2011
                     /gene="pdhA"
                     /locus_tag="PTC08_001345"
     CDS             899..2011
                     /gene="pdhA"
                     /locus_tag="PTC08_001345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase (acetyl-transferring) E1
                     component subunit alpha"
                     /protein_id="HDK5682858.1"
                     /translation="MVTKLNNQFDAEKVLKDTEAKFEMVQILDADGNVTNEDLLPDLS
                     DEQLVELMRRMVWTRILDQRSISLNRQGRLGFYAPTAGQEASQLASQFALEQEDFILP
                     GYRDVPQLIWHGLPLTKAFLFSRGHFVGNQMPEGVNALSPQIIIGAQYIQTAGVALGL
                     KKRGKKAVAITYTGDGGSSQGDFYEGINFASAYKVPAIFVIQNNNYAISTPRDKQTAA
                     QTLAQKAIAVGIPGIQVDGMDALAVYQATKEARDRAINGEGPTLIETMTYRYGPHTMA
                     GDDPTKYRTSDEDSEWEKKDPLVRFRKFLENKGLWSEEKENEVIEQAKNEIKAAIKEA
                     DSTEKQTVTSLMEIMYEEMPANLKEQYEIYKEKESK"
     gene            2015..2992
                     /locus_tag="PTC08_001346"
     CDS             2015..2992
                     /locus_tag="PTC08_001346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017637695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-ketoacid dehydrogenase subunit beta"
                     /protein_id="HDK5682859.1"
                     /translation="MAQMTMVQAINNALATELKNDENTLLFGEDVGVNGGVFRVTEGL
                     QKEFGEDRVFDTPLAESGIGGLALGLSTQGYRPIMEVQFLGFVFEVFDSVAGQIARHR
                     FRSGNSKVAPVTVRAPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLIE
                     SIRSNDPVVYLEHMKLYRSFREEVPEEEYTIEIGKANVKREGTDLTIITYGAMVQESM
                     KAAEELEKDGHSVEVIDLRTVQPLDVDTLVKSVEKTGRVIVVQEAQKQAGVGANVVAE
                     LSERAILSLEAPIGRVAAPDTIYPFTQAENVWLPNKTDIVEQAKKTLEF"
     gene            3148..4449
                     /locus_tag="PTC08_001347"
     CDS             3148..4449
                     /locus_tag="PTC08_001347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxo acid dehydrogenase subunit E2"
                     /protein_id="HDK5682860.1"
                     /translation="MAFEFRLPDIGEGIHEGEIVKWFVKAGDTIEEDDVLCEVQNDKS
                     VVEIPSPVSGTVLEVLVEEGTVAVVGDIIVKIDAPDAEEMEFKGGHSNDAPAKAEEAK
                     EEAPQEEAAPAAQEAVEVDENRQVKAMPSVRKYARDNNVNIKAVNGTGKNGRITKEDV
                     DAYLNGGEQAATAQDTASAESSEASTAPAASAPAVSTEGEFPETTEKISAMRKAIAKA
                     MVNSKHTAPHVTLMDEIDVQELWDHRKKFKEIAAEQGTKLTFLPYVVKALVSALKKYP
                     ALNTSFNEEAGEVVQKHYWNIGIAADTDRGLLVPVVKHADRKSIFQISDEINELAVKA
                     RDGKLTSDEMKGATCTISNIGSAGGQWFTPVINHPEVAILGIGRIAQKPIVKDGEIVA
                     APVLALSLSFDHRQIDGATGQNAMNHIKRLLNNPELLLMEG"
     gene            4453..5859
                     /gene="lpdA"
                     /locus_tag="PTC08_001348"
     CDS             4453..5859
                     /gene="lpdA"
                     /locus_tag="PTC08_001348"
                     /EC_number="1.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009383646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HDK5682861.1"
                     /translation="MVVGDFPIETDTIVIGAGPGGYVAAIRAAQLGQKVTIVEKGNLG
                     GVCLNVGCIPSKALLNVSHRFEQAQHGADLGITAENVSLDFDKVQSFKGSVVSKLTGG
                     VESLLKGNKVEIVRGEAYFVDEHSLRVMDDKSAQTYNFKNAIVATGSRPIQIPNFEFG
                     GRILDSTGALNLQEVPKKLVVVGGGYIGSELGTAYANFGTEVTILEGAKEILGGFEKQ
                     MVAPVKKEMKAKGMIIETEALAKSAEETDNGVKVTYEVKGEEKTIEADYVLVTVGRRP
                     NTDELGLEEVGVKLTDRGLVEVDKQSRTSVDSIYAIGDIVPGLPLAHKASYEAKVAAE
                     AIAGQNSEVDYIGMPAVCFTEPELAQVGYTEAQAKEEGLDIKASKFPYQANGRALSLN
                     DTNGFVKLVTLKEDDTLIGAQVVGTNASDVIAELGLAIEAGMNAEDIALTVHAHPTLG
                     EMSMEAAEKALGLPIHTM"
     gene            6669..6941
                     /locus_tag="PTC08_001349"
     CDS             6669..6941
                     /locus_tag="PTC08_001349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0223 family protein"
                     /protein_id="HDK5682862.1"
                     /translation="MEYTYPIDVDWSQEEMVAVVSFFNAIESYYESQIERDTLMTRYR
                     EFKQVVPGKADEKNLFNDFKKQSGYDSYQVIQEAKQHPDQKTLKNS"
     gene            7044..7583
                     /locus_tag="PTC08_001350"
     CDS             7044..7583
                     /locus_tag="PTC08_001350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDK5682863.1"
                     /translation="MEIGQKIKNLRRLKNLTQEELGERTDLSKGYISQIESNKTSPNM
                     ETFLNILEVLGTSPRDFFDDKQVAKVHYPKSEQLSYCEDEKGYYLQWPVKRSNEFDME
                     PLLLTLEPHASYKDFQPSTSDTFVYCLEGAVTLTLGEQQYTAEKGDALYFKALATHRL
                     SNTSQVSAKLMIVATSSYL"
     gene            7598..8698
                     /locus_tag="PTC08_001351"
     CDS             7598..8698
                     /locus_tag="PTC08_001351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDK5682864.1"
                     /translation="MSELLKFKNVTKKYDTTTILNDIDLEIESGHFYTILGPSGCGKT
                     TMLKLIAGFETPDAGEVIYLGKNINQLPANQRQVNTVFQDYALFPHLNVYDNVAFGLK
                     LKKMKKDQIEKKVIEALKLVKLEDYMYSEIHALSGGQKQRIAMARAIVNEPEILLLDE
                     SLSALDLKLRTEMQYELRELQSRLGITFVFVTHDQEEALALSDFIFVMCAGKIEQFGT
                     PLDIYDEPVNRFVADFIGESNIVEGTMIRDYVVNIYGQDFDCVDKDIPPQTLVDVVIR
                     PEDITLVPKEQGLFKATVTSSLFRGVHYEMICEDRKGYEWMIQSTKNAEIGTRVGLDF
                     EPEAIHIMVPGETEEEFDKRIEGYGDLNHETY"
     gene            8685..9491
                     /locus_tag="PTC08_001352"
     CDS             8685..9491
                     /locus_tag="PTC08_001352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDK5682865.1"
                     /translation="MKHINRWLAIPYLLWMVFFIVIPVILLCYFSFVDDHGHFTLMNY
                     EQFFSVRYMRMLFESIVYATLITLICLLVSYPAAYFIHQSRHAASWLLVMIIPTWMNL
                     LLKTYAFIGIFSHDGLINKILIALNIPSQSILFTAPAFIFVAAYIYIPFMLLPIYNSM
                     KDIPNQLFFAAQDLGANTFTVIRKVLLPLTAEGVKTGIQVTFIPALSLFMITRLIAGN
                     KVINIGTAIEEQFLVIQNFGMGSTIALFLVLFMALVMILTRSKHKGGASK"
     gene            9488..10300
                     /locus_tag="PTC08_001353"
     CDS             9488..10300
                     /locus_tag="PTC08_001353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDK5682866.1"
                     /translation="MRWYGKFYLIAMLVVLYLPIFFLMLYSFNSAGNMVQFEGFTWEH
                     YQTLFDNKRLLQVVFNTIAVALLAAGIATIIGIFGALLLYQLRNQTVKISLLTLNNVL
                     MVSSDVVIGASFLIMFTALGHFTGFGLGFTSVLISHIAFCIPIVVIIVLPKLYEMNDS
                     IMNAARDLGASEFQLLSKVVIPYIMPGIIGGFFMALTYSLDDFTVSFFVTGNGFSVLS
                     VEVYSMARRGISMEINAISTILFALIMLGLLIYQIIQRQKQKIQSNKRGVSL"
     gene            10297..11370
                     /locus_tag="PTC08_001354"
     CDS             10297..11370
                     /locus_tag="PTC08_001354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter
                     substrate-binding protein"
                     /protein_id="HDK5682867.1"
                     /translation="MKQLIQLVGGALLLGLISLGVGYWINHDGIGGKQQEKLYVYNWG
                     EYIDPELLDQFEEETGIKVVYETFDSNEAMEAKIRNGGTHYDVAFPSDYTIEKMKKEH
                     LLRPLDHKKIPNMKHLDPYYMNQPFDRKNEYSMPYFFGTVGILYDKEKYEDIDFNSWN
                     ALKDPRLKNDVLLVDGAREIMGISLNSLGYSLNDKNPEHLKQAEQHLKTFAPNIRGVV
                     GDEIQMMLEQHEASAAVIWSGSAAPVFHEDERFDYVVPKEGSNLWFDNMVIPKTAQNV
                     EGAHKFINFLLDPEVNKQNTEWVEYATPNETARKQLPEEIRDDKRVYPTREEQQRLEV
                     YHDLGPDVLSEYNERFLNFKMAL"
     gene            11442..12452
                     /locus_tag="PTC08_001355"
     CDS             11442..12452
                     /locus_tag="PTC08_001355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020220276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4064 domain-containing protein"
                     /protein_id="HDK5682868.1"
                     /translation="MTGETYTHISRPVNRLAEKILGWLSWLLLLGTTVVAMFFGLVLF
                     SNESSIQSLENSIANNATLQELLTNNNMNATQFVIMLQNGVWAFIVYLIICLLISFLA
                     LISMNHRIVSGLLFLLVAIVTLPLFFILVPLFFFIIALMMFVRKEKYEAVPTYYDEGY
                     SYGPYATHEPQDYQQHETYREPVAYTENERPSNESYQTYEETPAYDSSVVNDDEPEVL
                     SRSAKYHQKSQKHREVSQADEADDTLVYDSRAMSRNVEQRQHDDELSTDTDIEDEAAS
                     MSRAEMKQQRKEEKKARKAYEKEQRKLRPSASSQRRQNYDDRMKLQQDRSKSDSQVDK
                     DQ"
BASE COUNT         4251 a         2088 c         2663 g         3597 t
ORIGIN      
        1 ccttgaaaaa tgtgtaaaag aacgaaaaat gtacgaatca atatttgaat tataacgtta
       61 ttttcattaa tattacgagt gacagataag gaggtctcca gaatgaaatt tcataaaaca
      121 attggagtag cagttgcaac aacattttta ttggcagctt gtagcaaaga tggtgaacat
      181 attgaaaagt acaatgacgg acttgaaaat atgcaaaaag ctgaaacacc gattcaagaa
      241 gttaataaag aaatgaataa acttgagaaa gaaaaagaaa agctatcaaa agaaattagt
      301 ggtaaaaaca ttgctgaagt ccaagataaa gtggatcaag tactcgataa tgcgaaaaag
      361 cgtgaaaagc aattaaaaaa agaagttgaa gcgatgaatc attctaaaaa agctttcgaa
      421 aaggcaaaag cagagtcgaa caaaattgaa gatgaagatg ataaaaaaga gtttgatgaa
      481 ttgaacaaag ccattgaaga aaaaaataaa aaacacgatg ctttcgttaa aggctatcaa
      541 gatgtcatca acaaagaaaa agatttgttc agttatttta aagaagattc aggttcacaa
      601 gaggaagtcg acaaacgttc taaagcgtta tctgatgttc aaaaaaatat gcagaaaaaa
      661 gtagaggact atacaaaagc gattcgtaaa gtacaaacag aaaagcaaga cgttgatgaa
      721 atcgctaaca aataactata acagtttgaa aggattggta taacagttgc ttctactgtt
      781 gtgttatcaa gtgttacaga actttaggaa aactgtttaa cagttcgtat attttgtgtt
      841 acactagagt aagtcgaatg ttatttattt tatatacggg aaaggtatgg tgaattgcat
      901 ggttactaag ttaaacaacc agttcgatgc tgaaaaagta ttgaaagata ctgaggcaaa
      961 atttgaaatg gttcaaatct tagatgcaga tggaaatgta acaaatgaag atttacttcc
     1021 ggacttatcg gatgagcagt tagtagaatt aatgagaaga atggtttgga cacgtatttt
     1081 agaccaacgt tcaatctcat taaatagaca aggacgttta ggtttctatg caccaactgc
     1141 tggtcaagaa gcatcacaac ttgcttcaca attcgcatta gagcaagaag actttattct
     1201 tcctggttac cgtgatgtac cacaattaat ttggcatggc ttaccattaa caaaagcttt
     1261 cttattctca cgtggtcact tcgtagggaa ccaaatgcct gaaggtgtga acgcgttaag
     1321 tccacaaatc attatcggtg cgcaatacat ccaaacagct ggtgttgcat taggacttaa
     1381 aaaacgcggt aaaaaagcag ttgcgattac gtatacagga gacggtggtt cttcacaagg
     1441 tgatttctat gaaggtatca actttgcttc agcgtacaaa gtgcctgcaa ttttcgtgat
     1501 tcaaaataac aattacgcga tttcaacacc gcgtgataaa caaactgcag cgcaaacatt
     1561 ggctcaaaaa gcgattgcag taggtatccc tggtattcaa gttgacggta tggatgcatt
     1621 agcagtatac caagcaacga aagaagctcg cgaccgtgct atcaatggtg aaggtccaac
     1681 attaatcgag acaatgacat atcgttatgg tccgcataca atggctgggg acgacccaac
     1741 gaaatacaga acatctgatg aagattcaga gtgggagaaa aaagatccac ttgttcgctt
     1801 cagaaaattc ttagaaaaca aaggcttatg gtctgaagaa aaagaaaatg aagtgattga
     1861 acaagctaaa aatgaaatca aagctgcgat caaagaggct gacagcactg aaaaacaaac
     1921 agtgacttca ttaatggaaa tcatgtatga agagatgcct gcaaacttaa aagaacaata
     1981 tgaaatctac aaagagaagg agtcgaaata ggccatggca caaatgacaa tggttcaagc
     2041 gattaacaac gcgctagcaa ctgaacttaa aaatgacgaa aacactttgt tatttggtga
     2101 agacgttggt gtaaacggtg gtgtattccg tgtaactgag ggcttgcaaa aagaattcgg
     2161 tgaagaccgt gtatttgaca cgcctttagc tgaatctggt atcggtggtt tagcgttagg
     2221 tctttcaact caaggatacc gtccaattat ggaagtccaa ttcttaggtt tcgtatttga
     2281 agtgttcgat tctgttgcag gacaaatcgc acgtcatcgt ttccgttcag gtaactcaaa
     2341 agtagctcca gttacagttc gtgcgccatt cggtggtggt gtacatacac cagaattgca
     2401 cgctgataac ttagaaggta ttttagcgca atcaccaggt ttaaaagtgg tgattccatc
     2461 aggtccatac gatgcaaaag gtttattaat cgaaagtatc cgtagcaatg acccagtcgt
     2521 atatttagag cacatgaaat tataccgttc attccgtgaa gaagtacctg aagaagagta
     2581 cacaatcgaa attggtaaag cgaatgttaa acgtgaaggt actgacttaa caatcatcac
     2641 ttatggtgca atggttcaag agtcaatgaa ggctgctgaa gaacttgaaa aagatggcca
     2701 ttctgttgaa gtgattgact tacgtacagt tcaaccatta gacgttgaca cacttgtaaa
     2761 atcagttgaa aaaacaggcc gtgttattgt tgttcaagaa gcacaaaaac aagcaggtgt
     2821 aggtgcaaat gttgtcgctg aattatcaga acgtgcaatt ctttcattag aagcaccgat
     2881 cggccgtgtt gcagcgccag atacaattta tccatttaca caagctgaaa acgtttggtt
     2941 accaaacaaa actgacatcg ttgaacaagc gaagaaaact ttagaatttt aatgtgtaat
     3001 ttttgagaag agtggaaaag aggactgtga catcagtttt ctgtcccacg cccttgcata
     3061 tggagaatga aatgattttt cgtttcttct cctatatgtg tgtaaacaaa gtattattta
     3121 taatttaatt atttaggagg aaagaacgtg gcatttgaat ttagattacc cgatattggt
     3181 gaaggtatcc acgaaggtga aatcgtaaag tggttcgtta aagctggaga cactattgaa
     3241 gaagatgacg tactatgtga agtacaaaat gataaatcag ttgtagaaat cccatcacct
     3301 gtaagtggta cagtacttga agtgttagtt gaagaaggta ctgtagctgt tgtaggtgac
     3361 atcattgtta aaatagatgc acctgacgct gaagaaatgg agttcaaagg cggacatagt
     3421 aatgatgcgc ctgcaaaagc tgaagaagct aaagaagaag cacctcaaga agaagcggca
     3481 ccagctgctc aagaagctgt agaagtggat gaaaacagac aagtaaaagc aatgccatca
     3541 gtgcgtaaat atgcacgtga caataatgtg aacattaaag ctgttaatgg tacaggtaaa
     3601 aatggtagaa ttactaaaga agatgtagat gcatacttaa atggtggcga acaagcagcg
     3661 acagctcaag atactgcatc agctgaatct tcagaagcat caactgcacc agcagcatca
     3721 gcaccagcag tttcaactga aggtgaattc cctgaaacaa ctgagaaaat ctctgcaatg
     3781 cgtaaagcaa tcgcaaaagc aatggtgaac tctaagcata ctgcacctca cgtaacatta
     3841 atggacgaaa ttgatgttca agagttatgg gatcaccgta agaaattcaa agaaattgca
     3901 gctgaacaag gtactaaatt aacattctta ccttatgttg ttaaagcttt agtatcagca
     3961 ttgaaaaaat acccagcact taacacttca tttaacgaag aagctggcga agttgtacaa
     4021 aaacattact ggaacattgg tatcgcagca gacactgaca gaggtctttt agtacctgtt
     4081 gttaaacatg ctgaccgtaa atcaatcttc caaatctcag atgaaattaa cgaacttgct
     4141 gtcaaagctc gtgacggtaa attaacatct gacgaaatga aaggtgcaac atgtacaatt
     4201 agtaacatcg gttctgcagg tggccaatgg ttcacaccag ttatcaacca cccagaagtt
     4261 gcaatcttag gtattggtcg aatcgctcaa aaaccaatcg ttaaagatgg cgaaatcgtt
     4321 gcagcacctg tgttagcatt atcactaagc tttgaccaca gacaaattga tggtgcaact
     4381 ggtcaaaacg caatgaacca catcaaacgt ttattaaaca atccagaact attattaatg
     4441 gaggggtaaa atatggtagt cggagatttt ccaattgaaa cagatactat tgtcattggg
     4501 gcaggtcctg gtggctatgt tgcagcaatc cgtgcagcac agttaggtca aaaagtaacg
     4561 atcgttgaaa aaggcaattt aggtggcgta tgcttaaacg taggttgtat tccttcaaaa
     4621 gcattgttaa acgtatctca ccgtttcgaa caagcgcaac atggtgcgga cttaggtatc
     4681 acagctgaga atgtatcttt agatttcgat aaagtacaat cttttaaagg ttcagttgtt
     4741 agcaaattaa ctggcggtgt tgaatcatta ttaaaaggaa acaaagttga aatcgttcgc
     4801 ggtgaagctt acttcgttga tgaacacagc ttacgtgtaa tggacgataa gagcgcacaa
     4861 acttacaact tcaaaaatgc tatcgtagca acaggttcac gtccaattca aattcctaac
     4921 ttcgaatttg gtggtcgtat ccttgactct actggtgcgt taaacttaca agaagtgcct
     4981 aaaaaattag ttgtcgttgg tggcggctac atcggttcag aattaggtac tgcctatgct
     5041 aacttcggta ctgaagtgac aattcttgaa ggtgcaaaag aaatccttgg tggtttcgaa
     5101 aaacaaatgg ttgcaccagt taaaaaagaa atgaaagcaa aaggcatgat catcgaaaca
     5161 gaagctttag ctaaatcagc tgaagaaact gataatggtg ttaaagtgac ttacgaagtt
     5221 aaaggtgaag aaaaaacaat cgaagctgac tacgtattag taactgtagg tcgtcgtcca
     5281 aacactgacg aacttggttt agaagaagtt ggcgtgaaat taactgaccg cggtttagtt
     5341 gaagttgaca aacaaagccg tacatctgtt gacagtatct atgcaattgg tgatatcgtt
     5401 ccaggcttac cactcgcaca caaagcaagc tacgaagcta aagtagcagc tgaagcgatt
     5461 gcaggacaaa attcagaagt ggattacatc ggtatgcctg cagtatgttt cactgagcca
     5521 gaattagcac aagtaggtta tactgaagca caagcgaaag aagaaggtct tgatatcaaa
     5581 gcttctaaat tcccttacca agcaaacggc cgtgcattat cattaaatga tacaaacggt
     5641 ttcgttaaac ttgtgacgct taaagaagat gacacgctta ttggtgcaca agttgtgggt
     5701 acaaacgctt cagacgttat cgctgaactt ggtttagcaa ttgaagcggg tatgaatgct
     5761 gaagatatcg ctttaacagt tcatgctcac ccaacattag gtgaaatgag catggaagct
     5821 gctgaaaaag ctttaggttt accaattcac acaatgtaat aatagttgaa tagataaggg
     5881 gctgtgcaga attgtgcagt ctctttttta tttaatagaa tttgttgttt ggttatgggt
     5941 tacttaaata aatttgtttg ctcgcttttt caaaacattt tatatacatg tttgaattaa
     6001 acatgctttg tttgaacacg catatacaca acaacatgat ataaagcgaa tagaagcgca
     6061 atggggttgg tataccaggt tttcccagtc ccaatcctat tgatggattt gtagccatta
     6121 ttgatgacag aacagacata aaacgagaat gaattggata taaaacatag atgctattga
     6181 tttacttgat gacataaact ctccttcatc ttccgcttta tttgttgtaa ggttgcccag
     6241 aatgctgacc ctcttgatag aatgcgtgca tactgctaac aaccacttct ttactttaat
     6301 agtgattact atttattgca gttgctgtca gacttctcaa ggcactcgct tttgagaagc
     6361 cgagtcatcc ttacgggtgc agtacgacga aatctttgtt gaacatgaga tttctgtact
     6421 gatcccaaga ttcactaacg ccgcaacaaa tgtaaccgtt taatcaaact ttagcgagtt
     6481 aaagggacag caccttggaa agggaagcat aaaggtaatc aaaagtataa atagcaagaa
     6541 gagggcaagt tagacaaaat aatgtatcaa tagtatcatt atttttattt tccctaccca
     6601 agcactttaa aactggcaca aaatgattta tagtcaacat aaaagttcaa tcataaagga
     6661 gtgaaatgat ggaatacaca tatccgatag atgtcgattg gtctcaagaa gaaatggtgg
     6721 ctgtcgtctc attttttaac gccatcgaat cgtattacga aagccaaatt gaacgtgaca
     6781 cactcatgac acgataccga gaatttaaac aagttgtccc aggcaaagca gacgaaaaaa
     6841 atctcttcaa tgattttaaa aagcagagtg gctacgacag ttatcaagtc attcaagaag
     6901 cgaaacaaca tcctgatcaa aaaactttaa agaacagcta aaaaggtatt gtaatttagt
     6961 gcgcgatttg ttatttttat taagcattaa acaaaatgtt tagtaaaagt aaacaagtcg
     7021 ctttttttga gtggagggac tctatggaga ttggacaaaa gataaaaaat ttaagacgtt
     7081 taaaaaactt aacgcaagag gaacttggag aacgcacgga tctatctaaa ggttatattt
     7141 ctcaaataga aagtaataaa acgtcaccca atatggaaac ttttttaaat attttagagg
     7201 tgcttggaac gtcaccacgc gatttttttg atgacaaaca agtagcgaaa gtgcattatc
     7261 cgaaaagtga acagttaagt tattgtgaag atgaaaaggg atattatttg cagtggcctg
     7321 tgaagcgttc aaatgagttt gatatggagc cattattgct cacattagaa ccacacgcat
     7381 catataaaga ttttcagccc tcaacatcag atactttcgt ctattgttta gaaggggcag
     7441 tgactttaac tttaggggag caacaatata ctgcagaaaa gggagatgca ttatatttta
     7501 aagcgctggc tactcatcgt ttatcgaata caagtcaagt gagtgcgaaa ttgatgattg
     7561 ttgcaacgtc atcgtattta taggaggttt taaagaattg agtgaattac taaagtttaa
     7621 aaatgttaca aaaaagtatg atacaacgac cattttgaat gatattgatt tagaaatcga
     7681 atcaggacat ttttatacca ttttaggacc atcaggttgt ggtaaaacga caatgttgaa
     7741 gttgattgct ggctttgaaa cccccgatgc aggagaagtg atttatttag ggaaaaacat
     7801 taatcaactt ccagcgaatc aacgtcaagt gaacacagtt ttccaagact atgcgttgtt
     7861 tccacatttg aacgtctatg ataacgttgc atttggattg aagttaaaaa agatgaaaaa
     7921 agatcaaatc gagaaaaaag tgatagaagc gttaaagctc gttaaattag aagactatat
     7981 gtacagtgag attcatgcgt taagtggggg ccaaaagcaa cgtattgcaa tggcacgggc
     8041 aattgtcaat gaacctgaaa tcttgttatt agatgagtct ttatcggcgc tcgatttaaa
     8101 gttacgtact gagatgcaat atgagttgcg cgaattacaa tcacgcttag gcattacgtt
     8161 cgtattcgtt acacatgatc aggaggaagc ccttgctttg agtgacttta tttttgtcat
     8221 gtgcgcaggt aaaatcgaac agtttggaac gccgcttgat atttatgatg agccggtcaa
     8281 tcgcttcgta gcagacttta ttggcgagtc gaacattgtt gagggaacga tgatcagaga
     8341 ctatgtggtg aacatttacg gccaagattt tgactgtgtt gataaagata ttccacctca
     8401 aactttagtt gatgttgtca ttcgcccaga agatattaca ctcgtaccga aagaacaagg
     8461 gctatttaaa gcgactgtga cgagctcgtt atttagaggc gtgcattatg agatgatttg
     8521 tgaagatcgc aaaggctatg agtggatgat tcagtcaacg aaaaacgcag agattggtac
     8581 acgcgtaggt ttagactttg aacctgaagc gattcatatc atggtaccgg gtgaaacaga
     8641 agaagagttc gacaaacgta ttgaaggtta tggagatttg aaccatgaaa catattaatc
     8701 gttggctcgc tataccgtat ttactttgga tggttttctt cattgtcatt ccagtcatat
     8761 tactttgtta cttttcattt gttgacgatc atgggcactt cacattgatg aattacgaac
     8821 agtttttctc tgtccgttat atgagaatgc tatttgaatc tattgtttat gcgacgttaa
     8881 ttacgctgat atgtttatta gtaagttatc ccgcagctta cttcattcat caatctcgtc
     8941 acgccgcgtc ttggttgttg gtgatgatta ttccaacatg gatgaattta ctacttaaga
     9001 catatgcatt cattgggatt ttcagtcatg atggtcttat caataaaatc ttgatagctt
     9061 taaacattcc atctcaatcg attttattta ctgcacctgc atttattttt gtagcggcgt
     9121 atatttatat tccattcatg ttgttgccaa tatacaacag tatgaaagat atcccaaacc
     9181 agctgttttt cgcagcacaa gatttagggg cgaatacgtt tactgtcatt cgtaaagtgc
     9241 tgcttccttt aacggcggaa ggggtcaaaa cagggattca agtcacattt attcctgcgt
     9301 tgtcactctt catgattacg agactgatcg ctggtaacaa agtcatcaat attggtacag
     9361 cgattgaaga gcaattttta gtcattcaaa actttggaat gggttcgaca attgcgctct
     9421 tcttagtgtt gttcatggca ttggttatga ttttaacacg cagtaagcat aagggaggcg
     9481 cttcaaaatg agatggtatg gaaagtttta tttaattgca atgttagttg tactgtactt
     9541 gcctattttc tttttaatgc tgtactcgtt taatagtgca ggcaatatgg tgcagtttga
     9601 agggtttact tgggaacatt atcaaacgtt attcgacaac aaacgtttac ttcaagttgt
     9661 gttcaacacg attgcggtgg cgttattagc agctggtatt gcgacgatca ttgggatatt
     9721 cggtgcgttg ttattgtatc aattgcgtaa tcaaaccgtt aaaatttcgt tattaacgtt
     9781 aaataatgtg ctcatggtat catcagatgt tgtgatcggt gcgtcatttt taattatgtt
     9841 tactgcacta ggacatttta caggatttgg attaggtttt acgtctgttc tcatctcaca
     9901 tatcgcgttt tgtattccaa tcgtggtcat tatcgtattg ccaaagttat atgaaatgaa
     9961 cgattcgatt atgaatgcag cacgagattt aggagcatca gagtttcaat tgttaagtaa
    10021 agttgtgatt ccatacatta tgccgggaat tatcggtggc tttttcatgg cattaacgta
    10081 ctcattagat gattttacag taagtttctt cgttaccgga aatggtttca gtgtgttatc
    10141 tgtagaagtt tattctatgg cacgtcgtgg tattagtatg gaaatcaatg cgatctctac
    10201 cattttgttt gcgttaatta tgctcggttt attgatttat caaatcattc aacgtcaaaa
    10261 acaaaaaatt caatccaata aaagaggtgt gtcattatga aacaattaat acagctcgtt
    10321 ggtggtgcac tgctattggg tttaattagt ttaggtgtcg ggtattggat taatcatgac
    10381 ggtataggtg gcaaacaaca agagaagctt tacgtctaca actggggaga atacattgac
    10441 cctgagttgt tagaccaatt tgaagaagaa acgggtatta aagtcgtcta tgaaacattt
    10501 gattcaaacg aggcgatgga agcaaaaatt cgaaatggcg gcacacatta tgacgtcgca
    10561 tttccgagtg actataccat tgaaaagatg aaaaaagaac atttattacg accgctcgat
    10621 cataaaaaga ttcctaatat gaagcacctc gatccgtatt atatgaatca accgttcgat
    10681 cgtaaaaatg aatattcgat gccatacttt tttggtacgg tggggatttt atatgataaa
    10741 gaaaaatatg aagatattga tttcaacagc tggaatgctt tgaaagatcc aagacttaaa
    10801 aatgatgtgc tcttagtcga tggtgcacgt gaaattatgg gtatttcatt gaatagttta
    10861 gggtatagtt taaatgataa aaaccctgaa catctcaagc aagcggaaca gcatctgaaa
    10921 acctttgcgc caaacattcg tggtgtcgta ggggatgaga ttcaaatgat gcttgaacaa
    10981 catgaagcga gtgccgctgt catttggagt ggatcggcag cccctgtttt ccatgaagat
    11041 gaacgctttg attatgtcgt tccgaaagaa ggttccaatt tgtggtttga taatatggtc
    11101 attcctaaaa cagcacaaaa tgtggaaggc gcgcacaagt ttattaattt cttgttagac
    11161 ccagaagtga ataaacaaaa taccgaatgg gtagaatacg caacacctaa tgaaacagcg
    11221 agaaagcaat taccagaaga gattcgcgat gataaacgtg tatacccgac acgtgaagaa
    11281 caacaaaggt tagaggttta tcatgattta ggaccagatg ttttaagcga atacaacgaa
    11341 cgttttctta attttaaaat ggcgctttaa ctgcgaatgt agtgatttcg ccaaagttta
    11401 gttataatga ggagagtaag ataaatatga ggagtgaaag catgacggga gaaacatata
    11461 cacatattag tcgtcctgta aatcgactcg ccgaaaaaat attaggttgg ttgagttggc
    11521 tattgctgct aggtactact gtagtcgcga tgttttttgg cttagttttg tttagtaatg
    11581 aaagttcaat tcaaagttta gaaaacagta ttgctaataa cgcgacatta caagagttat
    11641 taaccaacaa taatatgaat gcgacacagt ttgttatcat gttacaaaac ggtgtatggg
    11701 catttatcgt atatttaatc atatgtctgt tgatttcatt cctagcgttg atttcaatga
    11761 atcatcgtat cgtatcaggt ttgttatttt tgcttgtagc aatcgtgact ttaccattat
    11821 tctttatttt agtaccactc ttcttcttta tcattgcgct catgatgttc gttcgaaaag
    11881 agaagtatga agcggtgccg acgtattacg atgagggtta ctcgtatgga ccatatgcga
    11941 ctcatgaacc acaagactat caacaacatg agacatatcg tgaacctgtt gcatacacag
    12001 aaaatgaacg tccatcaaat gaatcatatc aaacttatga agaaacacca gcttatgatt
    12061 cttcggtagt caatgacgat gaaccagaag tgttatctcg ctctgctaaa taccatcaaa
    12121 aatcacaaaa gcatcgagag gtttcacaag cagatgaagc ggacgataca ttagtgtatg
    12181 acagtcgagc gatgtcaaga aatgtcgagc aacgtcaaca tgatgatgaa ctgtcgacag
    12241 atactgatat agaagatgag gcggcatcga tgtctagagc ggaaatgaaa caacagcgta
    12301 aagaagaaaa gaaagcgcgt aaagcatacg aaaaagaaca acgtaagctt cgaccaagtg
    12361 cttcctcaca acgacgtcaa aattatgatg atcggatgaa attacaacaa gaccgttcaa
    12421 aaagtgattc acaagtagat aaggatcaat aatatcaaaa aagcggatag gtcacttgat
    12481 gtgatacaca cggcgacacg cactttgagt ggagtcagac atgtatgaca tgaaagattg
    12541 cctatccgct ttgttatgtc atattatttt atagatagat acacatataa atttaaagt
//
LOCUS       DANHOL010000067        12353 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.067, whole genome shotgun sequence.
ACCESSION   DANHOL010000067 DANHOL010000000
VERSION     DANHOL010000067.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 12353)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12353)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12353
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.067"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            203..316
                     /locus_tag="PTC08_001356"
     CDS             203..316
                     /locus_tag="PTC08_001356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014533356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system Fst family toxin"
                     /protein_id="HDK5682869.1"
                     /translation="MCEIFFHYIATTLSGCTVALFAYWLHKKDNRDKNRRL"
     gene            complement(444..1805)
                     /locus_tag="PTC08_001357"
     CDS             complement(444..1805)
                     /locus_tag="PTC08_001357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS ascorbate transporter subunit IIC"
                     /protein_id="HDK5682870.1"
                     /translation="MQTILDLIVDVLSQPAILVALIAFIGLVVQKKPVSVVTSGTIKT
                     ILGFLVLSAGAGVVVQSLEPFGKIFQHAFGVQGVVPNNEAIISIALEKYGTTAALIMV
                     FGMLVNILIARVSNLKFIFLTGHHTFYMAAFLAIILTVGHIKGVLTVILGALILGLIM
                     AVFPALAQPTMRKITGNDQVALGHFGTVSYWAAGEVGKLFKGHSKSTEEINFSKGLSF
                     LRESTISISLTMILLYLIASLFAGVGYVHDEISKDQNFIVFSLIQGVTFAAGVFIILT
                     GVRLILAEIVPAFKGISEKLVPHSKPALDCPIVFPYAQNAVLIGFFVSFLTGVLGMFV
                     MFLIGGVVILPGVVPHFFLGATSGVFGNARGGIKGAVAGSALNGLLITFLPLLFLPFL
                     GDLGLASTTFSDTDFLVVGIVFGNIVKYLGIVGLVIGIIIVAAVAIVLQKRGRTVSEA
                     TKS"
     gene            complement(1824..2108)
                     /locus_tag="PTC08_001358"
     CDS             complement(1824..2108)
                     /locus_tag="PTC08_001358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HDK5682871.1"
                     /translation="MKILVVCGHGLGSSFMVEMNVQEVLKQLTLKDAVDVEHSDIMSA
                     SPEMADLFICGRDLEENAARLGDVLILDNILDKAELEGKLIDKFETLDVI"
     gene            complement(2105..2554)
                     /locus_tag="PTC08_001359"
     CDS             complement(2105..2554)
                     /locus_tag="PTC08_001359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HDK5682872.1"
                     /translation="MSLEMLTEDKINVKECVASWEEAIKEASQPLVEQEYISQSYIDA
                     MIDSVYRHGPYIVIAPEIAIAHTRPNGNVNKVGISLLKLNQHINFGEKSHYASLVFVF
                     SAVDTHSHLDILQSLAQILGDVAIVKNLIQSQNEKEILSIIKGVEQR"
     gene            complement(2567..4501)
                     /locus_tag="PTC08_001360"
                     /pseudo
     CDS             complement(2567..4501)
                     /locus_tag="PTC08_001360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729721.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="BglG family transcription antiterminator"
     gene            complement(5017..6051)
                     /locus_tag="PTC08_001361"
     CDS             complement(5017..6051)
                     /locus_tag="PTC08_001361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HDK5682873.1"
                     /translation="MTIRKQLIYSFIVTIITTTFLFYTLYKLMWFDGPLTILLTLCSF
                     LSGMMTLIIGIFFTVPMIKKIERLNHKTQKIANGQFETEKTKIHAPKEIQQLSESFDQ
                     MVDKIQEQMNLIKEEQEEKMNLVQNLAHDLKTPLASIKSYSEGLRDGIIHSECDTKKA
                     YSILISQSDRLSRMFDDLTDVITVNHQESEQTLIHMDQLLIPIFEIYSQKLHHENRQL
                     DVEIDPNIKPFIQDQRAIERILMNFIDNALKFSDHGSPLAVKVFEENDEIAISVIDQG
                     MGIMESDIKNIFERTFRVESSRHKDTGGSGLGLYIAKTLAHQMDGHIEVSSTYGQGTA
                     ITLYFPPKVC"
     gene            complement(6052..6738)
                     /locus_tag="PTC08_001362"
     CDS             complement(6052..6738)
                     /locus_tag="PTC08_001362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HDK5682874.1"
                     /translation="MTHILIVDDEQDIREICKTYFEYEGYHVSTASNGKEALDLLNTN
                     VDVMVIDIMMPEMNGYEVVREMKNQGLDIPYVYLTAKTSEQDTIFGLMLGADDYVKKP
                     FSPRELVIRVKNLMNRVNVTSPSTQETIHCGRLVLNNLNKTVELEGEVIPFRIKEFEL
                     LWYFANHESVALSKTDLLEQVWGYEYYEDMNTLNVHVHRIREKLEKYGYDDYIIATVW
                     GLGYKFQRQL"
     gene            complement(6716..7174)
                     /locus_tag="PTC08_001363"
     CDS             complement(6716..7174)
                     /locus_tag="PTC08_001363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HDK5682875.1"
                     /translation="MAIAYKVLILIIRLGSGFYILMQGFEKLTGGFAIDGLVSVIRDN
                     QDSPQWYKTFFEFAVANHLELFKWMVQIGEIAIGLGLILGVFSYTASFFGVFVMLNYI
                     LADMIFTYPLQLLFFIILLMNRETLASLSLNHFIKRKNIRNDEHDAHTHS"
     gene            complement(7214..7666)
                     /locus_tag="PTC08_001364"
     CDS             complement(7214..7666)
                     /locus_tag="PTC08_001364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DM13 domain-containing protein"
                     /protein_id="HDK5682876.1"
                     /translation="MNMKMALVSGALATTFLLGACGNDNADKAKEDNKAESSMHDKKA
                     NESKVDNSKVMKTGTFKGENNEMVKGKAEIKDGKLMLTDYESSKGPDLHVYLTKGNVI
                     KNGVKLDAVKYNEATQTFDLKDVNAADYDTVTIYCDKAHVIFGSAELK"
     gene            complement(9365..9685)
                     /gene="rbsD"
                     /locus_tag="PTC08_001365"
     CDS             complement(9365..9685)
                     /gene="rbsD"
                     /locus_tag="PTC08_001365"
                     /EC_number="5.4.99.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-ribose pyranase"
                     /protein_id="HDK5682877.1"
                     /translation="MVIADCGLPIPEGVKRIDIALKKGTPSFQEVYEALMYHMVVEQA
                     IVAREMVEENEALYQKVKNDFPTLEMVSHEKFKKQTRHAKAIIRTDEATPYANIILKS
                     GVIF"
     gene            complement(9747..10631)
                     /gene="rbsK"
                     /locus_tag="PTC08_001366"
     CDS             complement(9747..10631)
                     /gene="rbsK"
                     /locus_tag="PTC08_001366"
                     /EC_number="2.7.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribokinase"
                     /protein_id="HDK5682878.1"
                     /translation="MRQIYVIGSMSMDLVVSSQVVPEQGETVLGEDFFTTPGGKGANQ
                     AVAAARLGEQVHMIGCVGEDTFGEQIQQNFKDNGVQIDGIEVIEGESSGTAHITLSQQ
                     DNRIIVVPSANGYVTPERIQPYLARMEAGDIVLIQQEIPAETVAHVIDYCAQHDIVSI
                     LNPAPYREVPAKVIEQAHYITPNETESAHLFKGEAIEEVAAQYPNKLIVTLGSEGAMY
                     YNGVQIVKVPSFKRTVKDTTGAGDTFNGALAVGLQKDYSLTKAIEFANLAASYSVTGM
                     GAQGGMPYFADLERELGV"
     gene            complement(10631..11602)
                     /locus_tag="PTC08_001367"
     CDS             complement(10631..11602)
                     /locus_tag="PTC08_001367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HDK5682879.1"
                     /translation="MATIKEVAALAGVSVATVSRAMNRSGYVKAATKAKIEAAIQQLD
                     YAPNEVARTLNMKQSKVLGLLLPDMSNPFFTQVARGVEDTAMAHGYHIMIGNGAMNEH
                     KELNYLATFKANHCSGIIASQLSTEHAFEQLQSDERPHVLIDRVTKDDFCVEANHQQG
                     GRLQAEVVLRGEGQRVLIVYQDQSYQSFQQRYETARKVLQEAGCTVFEISDLAMTEAQ
                     FLSLVHENDIDSVICSHDVAAFRVLKWLNYDGQRVPEDVQVVGYDDMPLAEWLVPGLT
                     TVRQPAYTLGERAAQKLIAQIEGQSNIERKTLLDVTLIERETTRRNQ"
     gene            11872..>12353
                     /locus_tag="PTC08_001368"
     CDS             11872..>12353
                     /locus_tag="PTC08_001368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin family protein"
                     /protein_id="HDK5682880.1"
                     /translation="MAEFTLGDQMPNFQLNATDGTTFDFHQFQQTHPNQWYFVINFRG
                     SWCPVCMEELDSLIKNVGYFEKKNIQIILTSNDTAENLRQMVEEKQVPYPVLVDENND
                     FANTYGVYSHPDDSIYDDHGTHNEPAYFLVSEDNRLLYQQKQTNPFGRPSMIELRKII
                     "
BASE COUNT         3703 a         2604 c         2031 g         4015 t
ORIGIN      
        1 agtgacgtca atgaacgtcg aacaattgaa atatcacgcg atgtgagatt gacttttaaa
       61 aaacagagaa ccattcatca gcagaaaaac aataaacgac tatttttata ttataacttt
      121 atttttgcat ttataatgtt atataatagg gtatcgccta tcctttaggt gtcattttgg
      181 catagaaggg aggtgtagac atatgtgtga aatctttttt cactatatag ccactacttt
      241 aagtggctgt actgttgctt tatttgccta ttggctacac aaaaaagaca acagagacaa
      301 aaataggcgg ttgtagccac accataaaaa ccccctcact ggtccagagt gagggggttt
      361 ggtgtagtac atgtgtgaaa tcttatgaca ctattatagc gtctctttaa gaaaggtgca
      421 agtttatttt aaatgcagat tcattaagac tttgtcgctt ctgaaactgt acgaccgcgc
      481 ttttgtaata caatcgcgac ggcagctaca atgataatac ctatgaccag acccacaatg
      541 cctaaatatt tgacgatatt accaaataca atgccaacaa ctaaaaagtc agtatctgag
      601 aaggtcgttg aagcgagtcc taaatctcct aaaaacggta agaagagtaa aggtaaaaac
      661 gtgatcagta gaccatttaa tgctgaccct gcaacagccc ctttaatgcc accgcgtgca
      721 ttaccaaaca cacctgaagt cgcacctaag aagaagtgtg ggacaacacc cggtaaaatc
      781 actacaccac caattaaaaa catcacaaac ataccaagta cacctgttaa aaagctaacg
      841 aaaaacccaa tcaatactgc attttgcgca taagggaata caatcggaca atctaatgct
      901 ggcttcgaat gcggaaccaa cttttctgaa atacctttaa atgcaggtac aatttcggcc
      961 aaaatcaagc ggacgcccgt taaaatgata aacacccctg ccgcgaatgt aaccccttga
     1021 atgagtgaaa aaacgataaa gttttgatct ttactaattt catcgtgtac ataaccgaca
     1081 ccagcaaata aactcgcaat gagatacagc aaaatcattg ttaacgaaat actaatcgta
     1141 ctttctcgta aaaagctcaa acctttggaa aagttaatct cttccgtcga tttagaatgg
     1201 cctttaaata attttcctac ttcacctgct gcccaataac tcactgtccc aaaatggcct
     1261 aatgcgactt gatcattacc agtgatttta cgcatcgtcg gttgtgctaa tgctggaaat
     1321 acagccataa tcaatcctaa aattaatgca cctaatataa ccgttaacac acctttaata
     1381 tgccctaccg ttaaaataat ggctaaaaat gcggccatat aaaacgtatg atgcccagtt
     1441 aagaaaataa acttcaaatt cgatacgcgc gcaattaaaa tgttcactaa catgccaaat
     1501 accataatga gtgctgcagt tgtcccatat ttttctaaag ctatcgaaat aatcgcttca
     1561 ttgtttggaa cgaccccttg gactccgaat gcatgttgga aaatctttcc gaatggttct
     1621 aatgattgca caaccacacc ggcgccagca cttaatacta aaaaacctag aatcgtttta
     1681 attgttccgg atgtcactac tgacactggc tttttctgta caactaagcc gatgaatgca
     1741 attaaagcaa caagtatcgc aggctggctc agtacatcaa ctattaaatc aagtatcgtt
     1801 tgcatagaca acactcctta tttttaaatg acatctaacg tctcgaattt atctattagt
     1861 tttccttcta actctgcctt atctaaaata ttgtctaaaa tgagcacatc cccgagtcgt
     1921 gccgcatttt cttctaagtc acgtccacaa ataaacaaat cagccatttc aggacttgca
     1981 ctcataatgt cactatgttc aacatcgaca gcatctttta gcgtcaactg ttttaacact
     2041 tcttggacat tcatttctac cataaaacta cttcctaatc cgtgaccaca taccactaaa
     2101 attttcatct ttgctctacc cctttgataa ttgataagat ttccttttca ttttgacttt
     2161 gaattaaatt ttttactatt gctacatctc ctaaaatctg tgccaaactc tgtaaaatat
     2221 ccaaatgtga atgcgtatcc actgcactaa atacaaaaac taagctggca tagtggctct
     2281 tttcaccaaa attgatatgc tgattgagct tcaacaaact gatcccgact ttgttcacgt
     2341 taccattcgg acgcgtatgg gcaatcgcaa tctccggggc aatgacaata tagggaccat
     2401 gtcgatatac actatctatc atcgcgtcga tataactttg actaatgtac tcttgttcta
     2461 cgaggggttg agacgcttct ttaattgctt cctcccacga tgccacacat tctttcacat
     2521 tgatcttatc ttctgtcagc atttctaagg acatattcgg cctcctttac aaacacgcta
     2581 atttattttt caatcccgtc aaatctccat ttaagagttg gacacgcatg gtgtcatcca
     2641 tcaatatgtc actcagttct ttcaaagcag ttaaatgttt ttgcggttca tcggtcgcta
     2701 aaccaatcat caccttgacc ggatcaaatc gctcatgtcc aaagtagaca ccttgttcaa
     2761 aatgaaacaa tgtcatgcct actcccttca acgcaaattc tgtactgccg tgaagtaacg
     2821 caatatgcgg actgatgacc atatatgccc caaactcatc caacttattg ataatttctt
     2881 ttttgtactg tgcatgaatc atgcctgctt gctctagcgg tcgcatcact tcagcaatcg
     2941 cttcatttcg agacatcttt tggtgaatcg atcccaaaaa ttcagatttc atcacttgtt
     3001 tcaattgcaa gcctcgtctt gatagatgat gtacaaagcg ttcccgttct ttattaatga
     3061 tgtcattaag tttttctcta tctttctcgt ccaaaaaagg tgtcacttta atacattcaa
     3121 tggattccaa ttcgattggt actgtcgtaa tgacataatc gacgtaacgt tttttcaact
     3181 gtgtttcatc aatttgatac aacgaataag catttaaaat atcaaactct gggtaaattt
     3241 ttcgtaactt ctcttttaat aattgtgacg ttccaatacc agagccacac aataatacaa
     3301 ttttgatttt tcgacctcta tgctgtgtca atctttcaat tgccgaagcg acatgaagtg
     3361 ttaaatatgc catttcatca tctgtaaatt caacctcgta taattcttca aaaatccaaa
     3421 tattgtcggt aatcacttct gttatttcca tgtactgagt ataaatttct tgtttaatag
     3481 gattatgttg aacgaaacga tatgttaacc gattgagtgc aggagccaaa tgtagataga
     3541 gattattgag caatttcgtg tctctaatca aatcaatgcc ctagctcgca ctcatccttt
     3601 cgacaaattg gtgaatgaga attttaagtt cttcagtgcc aacatgatca ttttcaattt
     3661 ttaacttttt agcactcaat aaatgaagtg ctatgaacat cgcttctgat atcggaaacg
     3721 caatgtcatc atgttgttcg acttcgactg caatcgcttg agcaactcgg aatgcatccg
     3781 tctctatcaa tgctgtgagt gcttctgtcg gcggttccat cgtaaattgt tttttaacac
     3841 gctgtatcgc aatgagcaaa tgaatcacta atccatcaag cgcaatttga aagagtggat
     3901 accccttttc ttctaacgta cgaatgacca tttgtcgcat ccactgcata tcttcatttt
     3961 caaataatgt cttgcgtact aattcatttg tcgactttac ataatcgtga ataatgagac
     4021 cataagcctt gcgataactc ccttcatctc catcaatgac aaacccttta tttttcatat
     4081 aacgtaaagt taacgcctgc gcttgaagcc actctgtcac atctttcaaa tcatctacaa
     4141 tcgtacgtcg cgacacatta accaaagtag ataacatccg agaattaaca ggtgctttcg
     4201 cttcaaacag atgtaataaa atttgtaaat gccgttcact tttcgtaaaa tgcacatctg
     4261 gaaaagtcgc acgattcatc tgccgaattg cactgaaatt ttcacactca attttaatgc
     4321 cgttactttt actcctttga atttgtaatt gtaatgcttc cttcataaac tcaatgtact
     4381 caatatcata ttgaatcgtt ctttcggagc gttcaaattc atttgccaat tcagcaatgg
     4441 aaatgaaatc ttgagctttg ataactttgt ttaaaatttc aaattgtctg ttcgttagca
     4501 acgttcaacc tcctatgtca tcattgtaat agctccagtc gttttataga tgtgcaattc
     4561 acttcagttc tcaaaacgaa attttgcata tgcagctcga aggaaacgac agaactcact
     4621 acacgcgcat ctttgcacca cactgtagtt gtctttatta aaaccttaaa cgattcataa
     4681 tcaaagcggt ttcaaaaaca taaaatcatg attaatataa aaatggataa gtttgaacat
     4741 ataggaaatt gaaataaaga aagaaatcat caagaaataa cacctattta tgggcatttt
     4801 taaagtggtg aaacagtata agagagatgt gcaattgcaa caaaaaagag acggaggtga
     4861 gatgaaagaa tgtgaagaga gaaagctata tttctgaacg tttagctttc catccatcaa
     4921 aaaagacgct agggctatgc ctaacgcctg taatatctat ctatataatt tatgaaaggt
     4981 ttgagaagta ctgagtttga gaattattat ttatatttaa catacttttg gagggaagta
     5041 taatgtgatt gctgtccctt gaccatatgt gctactcact tcgatatgcc catccatttg
     5101 atgcgctaaa gttttagcaa tatataaacc aagaccagaa ccacctgtat ctttatgtcg
     5161 agaactttct acgcgaaaag ttcgttcaaa tatatttttg atatctgatt ccataatacc
     5221 cataccttga tcaatgacgg agatggcaat ttcatcattt tcttcaaaga ccttcacggc
     5281 taagggcgaa ccgtggtcag aaaatttcag cgcgttatcg atgaagttca tgaggatacg
     5341 ttctatcgcg cgttggtctt gaataaaagg tttgatatta ggatctattt ctacatcaag
     5401 ctgtctgttt tcatggtgta atttttgtga ataaatttca aatattggga taagcaattg
     5461 atccatatga atgagtgttt gttcgctttc ttggtggttg actgtgatga cgtctgtcaa
     5521 atcgtcgaac attctcgaca accgatcaga ctgacttata agaatgctgt atgctttctt
     5581 cgtatcacat tcactatgga taatgccgtc tcgcaatcct tctgaatagg acttaatact
     5641 tgctaagggt gtttttaaat catgggcaag attttgaact aaattcatct tttcttcttg
     5701 ctcttctttg ataagattca tttgctcttg aattttatcg accatttgat caaaagattc
     5761 actcaattgt tgtatttctt ttggggcatg tatttttgtc ttttctgttt caaattggcc
     5821 attcgctatt ttttgagttt tgtggttcag cctttctatc tttttaatca tggggactgt
     5881 aaaaaagata ccgataatga gtgtcatcat accagaaaga aatgaacata gcgttaatag
     5941 aatcgttaac ggtccatcaa accacatcaa tttatatagc gtatagaata aaaaggtcgt
     6001 tgtgataatt gtgacgataa acgaataaat taattgcttg cgtatcgtca tttaaagctg
     6061 cctctgaaat ttatagccca atccccatac cgttgcaatg atatagtcat cgtagccata
     6121 tttctctagt ttttcgcgta tacgatgaac atgaacattt agggtattca tgtcttcgta
     6181 atactcgtaa ccccaaactt gttctagcaa atctgttttg gacaaagcga ctgattcatg
     6241 gtttgcaaag taccatagca attcgaactc tttgatgcga aaagggatca cttccccttc
     6301 taattctacg gttttgttta agttatttaa tacgagtctg ccacaatgaa tcgtttcttg
     6361 tgttgaagga cttgtgacgt tgacacgatt cattaaattt ttcactcgta taactaactc
     6421 acggggactg aagggtttct tgacgtaatc atctgcccct aacattaaac cgaatatggt
     6481 gtcttgttcg cttgtcttcg cagttaagta aacatatggg atatcgagtc cttgattttt
     6541 catctcgcgt accacttcat atccattcat ctcaggcatc ataatatcaa ttaccataac
     6601 atcaacattc gtatttaata aatcgagtgc ctctttgcca tttgatgctg tggaaacgtg
     6661 gtagccttcg tattcaaaat aggttttaca gatttctcgg atgtcttgct cgtcgtcaac
     6721 tatgagtatg tgcgtcatgt tcatcattcc ttatattttt acgtttgatg aaatgattta
     6781 aactcaatga tgctaatgtt tctctattca ttaatagaat aatgaaaaac aacaattgaa
     6841 gtgggtacgt aaaaatcata tcagctaaaa tataatttaa cataacaaac acaccaaaga
     6901 aactcgcagt atatgagaaa acacctaaaa tgagacctaa accaattgca atctcaccta
     6961 tttgaaccat ccatttgaaa agctccaggt ggtttgcaac tgcaaactca aagaatgtct
     7021 tataccattg tggggaatct tggttgtcac ggattactga aacaagtcca tcaatcgcaa
     7081 aaccacccgt tagtttttca aagccttgca tcaggatata aaaacctgat cctaagcgaa
     7141 taatcaaaat taagacttta taagctatcg ccatatgtta ctctcctttc ttcatgatgt
     7201 cgattccgtc taactattta agttccgcag aaccaaaaat aacgtgtgct ttgtcacagt
     7261 aaattgttac tgtatcatag tctgctgcat tgacatcttt aaggtcgaaa gtttgagttg
     7321 cttcgttata tttaactgca tctaacttca caccgttttt gatgacatta ccttttgtta
     7381 agtaaacatg taaatctgga ccttttgatg attcgtagtc agttaacatc aacttaccat
     7441 ctttaatctc agctttacct tttaccattt cgttgttttc acctttgaat gtgcctgttt
     7501 tcattacttt tgaattatct actttagact cattcgcttt tttgtcgtgc attgaagatt
     7561 cagctttgtt gtcctctttt gctttatctg cgttgtcgtt accacaagca cctagcaaaa
     7621 atgttgtcgc taaagcacct gaaactaatg ccattttcat gttcataaca aattccttct
     7681 ttctttttgg gattacatgt atcatgatat atgcttgaaa cagcaattaa cataaactac
     7741 tcattaataa ttcttaacta aatattaaca accatttact aattagtttt tattaatttt
     7801 aagtttatta tcatacgttt gttgtagacg tcagtgacaa tatgcacact ttcttttata
     7861 tttcattggt tcagatatag tccgtccgat atcctgcctc atcgctgtca cattattcta
     7921 agaagtctat tcatccgctt gcatactcta tgcaattaaa atagaaatcg ttattcgttg
     7981 catcatctct tcactgatat atcaaaaaac atagaaacac attaaaatag accgttacac
     8041 aaaattttta ggcgagccta acttttttgt ttacaaaacc tatatgatgt gttatcttaa
     8101 aattgttcaa ttcgataaac gtatatcaca tgtcattctc tgtaatggct ttgctttttc
     8161 atagcgattc atctggtctc aaaggcataa cttgagccct atgcgtacac tgtgatgacc
     8221 gtatgaacga tatgaaggca tctctgatat tttcgtttta tcattgaaca attcaattaa
     8281 ggcaacgtcg cattagccct gcacaacttg tcttaattga tggtggaacg taatgttact
     8341 tgatatttgt tattgtgcgc acactcatat ctatgtttta cattacaaag taacaatgct
     8401 gatacctatc tcaacattgt tcgcatttca atcaaatccg ttacttgaag ccaagggtca
     8461 agaatcatac acatatcagt cattcctaaa aagactacag taagcaagca ttcatatttc
     8521 ccttaataag taaaagccaa gttggacaag ctcagcatag ttgatagcag attgtcacaa
     8581 cggaaatgtt tatcctccat aactaaagta agattgaaca gcaggtatga atcctattaa
     8641 acagttgaag gttcgcctat gttatccctc tactacatag agtgaaacga tatcgactgt
     8701 aacatgttaa tatatgccat gatataaatt agcccttgat attgtgacat gtattgggta
     8761 gttacgttat acccctaaaa ttgcgtaaca cctccaaaat tacaacttga ttctatagtt
     8821 aaggttgttg gtatagtgat acactccctt tcatctatag caacataccg acatcttgta
     8881 tcatttttac aactctagat aattaaaaaa atcatcttaa aatcttaaaa cctttagacc
     8941 cctgatgtgc ttcatctcac atcaggggca ttttttgcgg tgtggtgggt gtcgtgttgg
     9001 ttttgggcat tgggtgatac agacgttgtt ttaaatggtt ggttgcttgc ctcgggactt
     9061 ttctctttgt ggaacatttg ctcatttcac cctctgttac attcagtcac cctacttgcc
     9121 gtgagtggag atgaaggata gcaaagcccc ccgttttaat attcttccct ttaaattgtg
     9181 agacatcata aaaacagacg tatgtgagat ttctcccaaa catacgtcta cttttgataa
     9241 atatgtgatt taattactca ttgatttgtt tcaacggtgg ctaatcgtag tcgctcattc
     9301 gtatcaaggt gattcatgag ctcttgaaat tttgatggtc taggtagggc atcgttgtca
     9361 ccccttagaa aatcacacca ctttttaaaa taatattggc atatggtgtt gcctcatctg
     9421 ttcgaataat tgctttcgca tggcgtgttt gttttttaaa tttttcatgt gaaaccattt
     9481 caagcgttgg aaaatcattt ttaacttttt gatacaacgc ttcattttcc tctaccattt
     9541 ctcgagctac aatggcttgt tccacgacca tatgatacat aagcgcttca tacacttctt
     9601 gaaatgatgg cgtgcctttt ttcaatgcga tatcaatacg tttgacccct tctggaattg
     9661 ggagtccaca atccgcaata acgatttcat ctgtgtgacc tcacctgttt aatgcacgcg
     9721 aaatttcact gtttaatgtt ccaaatctat acacctaatt cacgttccaa atccgcaaaa
     9781 tacggcatgc cgccttgtgc ccccatacct gttactgaat aacttgctgc taagttggca
     9841 aattcaatcg ctttagttaa cgaataatct ttttgtaatc cgactgccaa ggcgccgtta
     9901 aacgtatctc ctgcacccgt cgtatctttg accgttcttt tgaaacttgg gaccttaacg
     9961 atttgtacgc cgttataata cattgccccc tccgaaccaa gtgtcacaat gagtttattt
    10021 ggatattgtg ccgcgacctc ttcaatggcc tcacctttaa atagatgcgc gctttccgtt
    10081 tcattaggcg taatataatg cgcttgttcg atgacttttg caggcacttc acgataaggt
    10141 gcgggattta aaatagatac aatatcatgt tgcgcacagt aatctatcac atgtgcgact
    10201 gtttctgctg gaatttcttg ttgaatcagc acaatatctc ccgcttccat acgcgctaag
    10261 tacggctgaa tccgttctgg tgttacataa ccatttgctg atggcacaac gattatgcga
    10321 ttgtcttgct gtgataatgt aatatgagct gttccagatg attcaccttc aatcacttca
    10381 atgccatcta tttgcacacc attgtcttta aagttttgtt gaatttgctc gccgaatgta
    10441 tcttcaccga cacaaccgat catatgcact tgttcaccga gacgtgctgc cgcaacagct
    10501 tggttcgcac ctttgcctcc aggtgttgta aagaagtcct cacctaacac tgtctcacct
    10561 tgttctggta ccacctgtga agataccact aaatccatag acatacttcc aatgacataa
    10621 atttgacgca tcattgattc ctccttgtcg tttctctttc tattaatgtg acatctaaca
    10681 atgttttgcg ttctatgttg ctttgccctt caatttgggc gatcaatttt tgcgctgcgc
    10741 gttcacctaa cgtatacgcc ggttgtcgca cagtcgttaa tccaggcacc aaccattccg
    10801 ctagtggcat atcatcataa ccgacaactt gcacatcttc cggtacccgc tgtccgtcat
    10861 aattgagcca ttttaataca cgaaatgcag ctacatcatg actacaaatg acactgtcaa
    10921 tgtcgttttc atgaactaaa cttaaaaatt gtgcctcagt catagctaaa tctgatattt
    10981 caaacactgt acagcccgct tcttgcaaca ctttgcgtgc cgtttcatac cgctgttgaa
    11041 atgattgata actttgatct tgatacacaa tcaacacgcg ttggccctcg ccacggagca
    11101 ccacttccgc ttgcaaacgt cccccttgtt gatgattggc ttcaacacaa aagtcatcct
    11161 tcgtcactcg atcgataagt acatgcggtc gctcgtcact ttgaagctgt tcaaaggcat
    11221 gctctgtcga cagttgggat gcgataatac cactacaatg attcgcttta aaagtcgcta
    11281 aataattcaa ctctttatgc tcattcatcg caccatttcc aatcataatg tgataaccgt
    11341 gcgccatcgc tgtatcttca acgccacgtg ctacttgtgt aaagaaaggg ttgctcatat
    11401 ctggtaacag gagaccgagc actttagatt gtttcatatt caaagtccgt gccacttcat
    11461 tcggtgcata gtctaactgt tgaatcgcgg cttcaatttt agctttcgtc gctgctttaa
    11521 catagccact ccgattcatc gcccgagaca cagttgctac cgataccccc gccaaagcag
    11581 ccacttcttt aatggtcgcc atcacacacc tcctattatg gaaacgttta catataaatt
    11641 accacgagtt tcacaaacgt gcaatataaa gtgtttcatc tcttgttaaa actaggactt
    11701 cccgcacatt aacggtagta taaaagtcat tttctattca aaaattactt tattttttct
    11761 ttaccacaag cacactactt cgctgtttat cacaataatg ctatatttga attagcagaa
    11821 atatcttaac agtatatcca tattaaagaa aataaaaagg agagaataac aatggcagag
    11881 tttacattag gcgatcaaat gccgaacttt caattgaacg caacagatgg aacaacattc
    11941 gattttcacc aattccaaca aacgcatccg aaccaatggt attttgtgat taatttccgt
    12001 ggctcttggt gccctgtttg tatggaagag ctcgatagtt taattaaaaa tgtaggttac
    12061 tttgaaaaga aaaatattca aatcatttta acgtcaaatg atacagcaga aaatcttcgt
    12121 caaatggttg aggaaaaaca agtgccttat ccagtgcttg tcgatgaaaa caatgatttt
    12181 gcgaatactt acggggttta tagccatcca gatgattcga tttatgatga ccacgggacg
    12241 cacaatgaac ctgcatattt cttagtttct gaagataatc gtttacttta tcaacaaaaa
    12301 caaacaaatc catttggccg cccaagcatg attgagttaa gaaagattat tca
//
LOCUS       DANHOL010000068        12280 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.068, whole genome shotgun sequence.
ACCESSION   DANHOL010000068 DANHOL010000000
VERSION     DANHOL010000068.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 12280)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12280)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12280
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.068"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            13..984
                     /locus_tag="PTC08_001369"
     CDS             13..984
                     /locus_tag="PTC08_001369"
                     /EC_number="2.7.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001831113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family glucokinase"
                     /protein_id="HDK5682881.1"
                     /translation="MLAADIGGTTCKLGIFDKSLTQLSKWSIETDISDPTGEVLLKQI
                     YDAFVHEMERNHYDMNEVVGMGIGVPGPVKFESGVVNGAVNLNWPQPVNVSEIMQQFV
                     SFPVYVDNDANVAALGEKHNGAGKDADDVVAITLGTGLGGGIIANGEIVHGHNGSGAE
                     LGHFRVDHDQRFKCNCGKSGCIETVASATGVMNLVYFYYPKLTFKSSILPLIKEHKVT
                     AKAVFDAAKAGDQFCIFITERVAQYVAYLASIISVTTNPKYIILGGGMSDAGDILIEN
                     IKTEYYHLAFTPSQQGTEIVRAELGNDAGIVGAAGLIKTYIIEKERI"
     gene            985..1296
                     /locus_tag="PTC08_001370"
     CDS             985..1296
                     /locus_tag="PTC08_001370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MTH1187 family thiamine-binding protein"
                     /protein_id="HDK5682882.1"
                     /translation="MAIVDVVVIPVGTEGPSVSQYIAEIQTKLEEFKQEGKIDYQLTP
                     MNTLIEGELADLFEVIQAIHELPFNKGLDRVCTNIRIDDRRDKQRKMNDKLDSVKKHL
                     K"
     gene            1309..1938
                     /locus_tag="PTC08_001371"
     CDS             1309..1938
                     /locus_tag="PTC08_001371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HDK5682883.1"
                     /translation="MNISNLTLGFVSTNTYFVENDTEMILIDPAGEIDKIDNKIKQSG
                     KQLIAILLTHAHFDHIAALDDVLTRYDVPVYMHAEEFSFLTDPQKNGSAKFKDYGLPI
                     ITSQAEPHALDEGTQQIGQFNIQTLHTPGHSPGSLTYVFDEFAVVGDTLFNNGIGRTD
                     LYQGNYETLVDSIKDKLFSLDEQLPLYPGHGPSTTVEDEYMNPFLDGQS"
     gene            2099..3073
                     /gene="tadA"
                     /locus_tag="PTC08_001372"
     CDS             2099..3073
                     /gene="tadA"
                     /locus_tag="PTC08_001372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Flp pilus assembly complex ATPase component
                     TadA"
                     /protein_id="HDK5682884.1"
                     /translation="MQLLLDHVIQFALQNEASDIHFIPSQSQVEVKLRVKDQLVLYDT
                     LNLETYQKLLTLLKYQAGLDISTRHKAQSGRYIYEHKALYYLRVSTLPLNLGTESCVI
                     RITPQYFQNAKAHSVLDIKSNMEKKQGLILFSGPTGAGKSTLMYQMVVYAKQKLNLNI
                     ITIEDPVEQLVNGITQISVNEKADITYGSSLKAILRCDPDVILIGEIRDSHIARDVIQ
                     ASLSGHLVLSTIHANDCQGVLLRLIEMGLSHQDLSQSINLIINQRLITTKNDQRQLVY
                     ETMDQQEIHYFLNNNFQLPTAFTSLSHKLQLLNKEGVIDEKILRKYTI"
     gene            3042..4109
                     /locus_tag="PTC08_001373"
     CDS             3042..4109
                     /locus_tag="PTC08_001373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HDK5682885.1"
                     /translation="MKRFYESIRFKRTLRKLHVQHLLIMERLYQLLLHGFTFAEAMLF
                     IYEQLNIRHPTFENQLIEKLKGGANCYDIFRMFGYPETILMQLYFAERYGSLPETLKL
                     CHQFYTKNRKLKKQLIKTIQYPIVLILIFLALIVTLNHTVMQQFDQMYETMQLNQSSL
                     QYIVKMFIQNFPAIFLIILLVIVSTYYIVKLRLNHLPIKRQVHFLTHLPIFKRYYKLF
                     TTYHMTNQFVLFFRNGITLNDIVKIYLNQKANLFLQYIGHTLKEHLQQGESFSHILLQ
                     LDCFEPQFISYIKQGEKRDKLDIELEVYSTFLLERIEAMIHQHIKWIQPIMFAFIGIL
                     VLSVYLIMMLPVFEMMQAIKE"
     gene            4122..4445
                     /locus_tag="PTC08_001374"
     CDS             4122..4445
                     /locus_tag="PTC08_001374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HDK5682886.1"
                     /translation="MIQQLKLKFNKKKGFTLIEMLLVLLIISVLLILIIPNIAKQSDH
                     IQKTGCAAQLKMVDSQIEAYALKFNHKPNTIDDLVREGYIKESQKTCKSGEEITIRDG
                     EAVAS"
     gene            4423..4863
                     /locus_tag="PTC08_001375"
     CDS             4423..4863
                     /locus_tag="PTC08_001375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HDK5682887.1"
                     /translation="MAKQLRHDGFTLIEMLLVLAIISVFISITMAHPQFNLFHNSTEY
                     EIKKLTSEIDYYQAYAIKSHAPVMLLFRPNRNDIKIETIHPHRVTTIPLAPLQLKMTS
                     NIHALIFDKDGKANQFGTLRFEHQQRAFSLIFHIEQGRYRISYQ"
     gene            4956..5168
                     /locus_tag="PTC08_001376"
     CDS             4956..5168
                     /locus_tag="PTC08_001376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682888.1"
                     /translation="MTHQMVKTYREAVEDLTLKRTLFEVIQHQIPEKKLTVSHYEIIP
                     TAHQLCIQNHQTKQKYCYRKAGLHAH"
     gene            5140..5559
                     /locus_tag="PTC08_001377"
     CDS             5140..5559
                     /locus_tag="PTC08_001377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HDK5682889.1"
                     /translation="MEKQGFTLIESLVALVIQMTIVLLIPLLIFSLGQLKTTVFEDRT
                     YDIELMIKDISHTLHAKDVKAKMIKKKELEIRDSNTEINYKLRNQKIIKTVGHRGNIT
                     MCNHVVDVHFEKLTHDLMLMKITYQEGTTTHEKEILL"
     gene            5723..6250
                     /locus_tag="PTC08_001378"
     CDS             5723..6250
                     /locus_tag="PTC08_001378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase"
                     /protein_id="HDK5682890.1"
                     /translation="MKLKMDTPLLFIGFMGAGKTTIAETLAESYQCSFIDLDAYIETE
                     TQKSIPQIFEEEGEQGFRRHEFECLEKAIQSYDIIATGGGILTYDATYQFLKEAEVKA
                     IWVDAPIEALYERVKDDTNRPNANKKSFESLKHLYSTRISRYNEIAFIKISSAAPLSE
                     TLNEIKIKLSANDQY"
     regulatory      6237..6332
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00504"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="glycine riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="glycine"
                     /db_xref="RFAM:RF00504"
     gene            6408..7499
                     /gene="gcvT"
                     /locus_tag="PTC08_001379"
     CDS             6408..7499
                     /gene="gcvT"
                     /locus_tag="PTC08_001379"
                     /EC_number="2.1.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017636954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system aminomethyltransferase
                     GcvT"
                     /protein_id="HDK5682891.1"
                     /translation="MSEELKKTSLYQHYVDSGAKIVEFGGWAMPVQFSSIKEEHNAVR
                     TNVGLFDVSHMGEIRIEGPEAAHLVQYVLSNDTNQLTLSKAQYTALCNEEGGVIDDLV
                     IYQLGETQYLLVVNAANVDKDYDWIVQHSSRFDATVTNVSDQYGQLALQGPNARRIIQ
                     DNVSEDVSEMGMFEFKQNVKIFGKNVILSQSGYTGEDGFEIYCDSEDVTTIWDALLSK
                     DVTPCGLGARDTLRLEAGLPLHGQDLSESITPYEGGIAFAAKPLIEEDFIGKSVLQSQ
                     KENGAPRRTVGLRMIDKGIPRTGYTIYDLDGNEIGEVTSGTQSPSTGHAIGMGIIARD
                     AFEMGKEVVVQVRKRQVKAKIVKKNQIER"
     gene            7512..8861
                     /gene="gcvPA"
                     /locus_tag="PTC08_001380"
     CDS             7512..8861
                     /gene="gcvPA"
                     /locus_tag="PTC08_001380"
                     /EC_number="1.4.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002465752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminomethyl-transferring glycine dehydrogenase
                     subunit GcvPA"
                     /protein_id="HDK5682892.1"
                     /translation="MSHRYIPLTEKDEQEMLETIGVKSIQELYSDVPEDVLLSRDLNI
                     ADAEPETQLLKRLTRIANKNITKETHTSFLGAGVYDHYAPAVVDAMISRSEFYTAYTP
                     YQPEISQGELQAIFEFQTMICELTAMDVANSSMYDGMTSFAEACLLAWGNTKKNKIVV
                     SKGLHYQALQVLNTYSKIREQYEVVTVDLDGTVTDLKKLEAAIDDETAAVAVQYPNFY
                     GSIEDLEAIQTLIADKKALFIVYANPLSLGLLTPPGEFGADIVVGDTQVFGIPTQFGG
                     PHCGYFATTKKLMRKIPGRLVGQTTDDEGNRGFVLTLQAREQHIRRETATSNICSNQA
                     LNALASSIAMSALGKQGLQEIAVQNMENANYAKEEFKNNGFTVLDGISYNEFVVRFDR
                     SIAEVNRALLDEGIIGGFDLSVVDDTFENHMLVAVTELRTKEEIDTFVQKAGEINGK"
     gene            8851..10323
                     /gene="gcvPB"
                     /locus_tag="PTC08_001381"
     CDS             8851..10323
                     /gene="gcvPB"
                     /locus_tag="PTC08_001381"
                     /EC_number="1.4.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminomethyl-transferring glycine dehydrogenase
                     subunit GcvPB"
                     /protein_id="HDK5682893.1"
                     /translation="MVSKSSPLIFERSRKGRFAYSLPQREIDNDVTNQLLDSKFIRKN
                     KAEFPEVSELDLIRHYTELSNKNFGVDSGFYPLGSCTMKYNPKINEKVARIPGFTEAH
                     PLQDEDQIQGALEIIYSLQEELKEITGMDEISLQPAAGAHGEWTALMIFKAYHLQNGD
                     AERDEVIVPDSAHGTNPASAAFAGFKSVTVKSNEKGEVDIDHLKEVVSDKTAAIMLTN
                     PNTLGIFETNIMEIRDIVHEAGGLLYYDGANLNAIMDKVRPGDMGFDAVHLNLHKTFT
                     GPHGGGGPGSGPIGVKKELRDYLPKPLVVKNGDRFEYDNDIPYSIGRVKPFYGNFGIY
                     LRAYTYIRTMGYQGLKEVSEAAVLNANYMKARLKDTFVIPFDQYCKHEFVLSGTKQKK
                     LGVRTLDMAKRLLDFGVHPPTVYFPLIVDEGMMIEPTETESKETLDYFCDALIQIAKE
                     AEEDPDKVLEAPHTTIIDRLDETTAARKPILKFENLKEEK"
     gene            complement(10679..11065)
                     /locus_tag="PTC08_001382"
     CDS             complement(10679..11065)
                     /locus_tag="PTC08_001382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016425163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HDK5682894.1"
                     /translation="MSNMTLIVLIVLALVIIWMVTNFIINKRSVTELNQEEFQEGIRK
                     AQVIDLREKADYDYGHIIGARNIPMTMFRQRYQGLRKDQPIYLVDANGIASYRAARTL
                     KKKGYTNLYMLKGGYKKWTGKIKSKK"
     gene            11216..12046
                     /locus_tag="PTC08_001383"
     CDS             11216..12046
                     /locus_tag="PTC08_001383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoate--protein ligase family protein"
                     /protein_id="HDK5682895.1"
                     /translation="MTETWHFMNTGSHHPYYNMALDEALLNFVSRGEIDPVVRFYTWN
                     PPTLSIGYFQRLSKEIDIEKVKEKGYGLVRRQTGGRGVLHDKELTYSVIVPEAHPDMP
                     QTVTEAYRVISGGLLEGFKSLGFDAHFAVPRSKEEREKLKQPRSSVCFDAPSWYELVV
                     EGKKIAGSAQTRQKGVILQHGSILQDVDIDDLFDMFIFKNERLKAKMKEAFVEKAVAI
                     NDLSNETITLAQMEVAFKEGFKKALDIEFKPLELTVAQQDEVKALEEKYRSEAFLYRK
                     "
BASE COUNT         4132 a         2115 c         2324 g         3709 t
ORIGIN      
        1 aacaaacaat taattttagc tgcagatatt ggtggcacga catgtaaatt aggtattttt
       61 gataaatctt taacacaatt atctaaatgg tctatagaga cggatatctc agatccaaca
      121 ggtgaagtat tacttaaaca aatttatgat gcgtttgtgc atgaaatgga acgcaaccac
      181 tatgatatga atgaagtagt aggtatgggt attggtgtac caggccctgt taaatttgaa
      241 tctggtgttg taaatggtgc tgttaacttg aattggccac aacccgttaa cgtctcagaa
      301 ataatgcaac aatttgtgtc attcccggtg tatgttgata atgatgcaaa tgtggccgct
      361 cttggtgaaa aacataatgg tgccggtaaa gatgcggatg atgtcgttgc aattacgcta
      421 gggactggtt taggtggcgg tattatcgct aatggtgaaa ttgttcacgg tcataacggc
      481 tcaggtgctg aacttggaca tttccgtgtc gaccacgatc aacgtttcaa atgtaattgt
      541 ggtaaatcag gctgtattga aacagtagct tctgcgacag gtgtcatgaa tttagtttat
      601 ttctactatc cgaagctcac tttcaagtct tcaattttac cgctcattaa agaacacaag
      661 gtcacagcta aagcagtatt cgatgcagct aaagcaggtg accaattctg cattttcatt
      721 acagaacgtg tcgcacaata cgtcgcatat cttgcaagca ttatcagtgt cacaactaac
      781 cctaaataca ttattttagg tggcggtatg tccgatgcag gcgatatttt aattgagaat
      841 atcaaaacag aatattacca tcttgcattc acgccttcac aacaaggcac tgaaattgta
      901 cgtgctgagt taggtaatga cgcaggtatt gtgggggctg caggactcat taagacatat
      961 atcattgaaa aggagcgtat ttaaatggcg attgttgatg tagtagtcat ccctgttggc
     1021 acagaaggac caagtgtcag ccaatatatt gcagaaattc aaacgaaact agaggaattt
     1081 aagcaagaag gtaaaatcga ctatcaactc acaccaatga atacattaat tgaaggagag
     1141 ctagccgatt tatttgaagt cattcaagct attcatgagt taccgttcaa taaagggctc
     1201 gatcgtgtat gtacaaacat tcgtatagac gaccgtcgtg ataaacaacg taaaatgaac
     1261 gataaactag attctgtcaa aaaacatttg aaataatgag ggtgtcacat gaatatttct
     1321 aatcttactt taggatttgt tagcacaaac acttactttg tggaaaatga tacagagatg
     1381 attttgattg atccagctgg tgaaattgat aaaattgata ataaaattaa acagtctggg
     1441 aaacaactga ttgctatttt gttaacacat gctcattttg atcatatcgc tgcattagat
     1501 gatgtgctga cacgatatga tgtacctgtt tatatgcatg cggaagaatt ttcgttttta
     1561 acggatccac aaaaaaatgg ttctgcaaaa tttaaagatt atggccttcc tattattacg
     1621 agtcaagcag aaccacacgc acttgatgaa ggaacacagc aaattggtca atttaacatt
     1681 caaactttgc atacaccagg acattcacca ggtagtttga cttatgtgtt tgatgaattt
     1741 gcagtagtgg gcgacacgtt atttaataat gggattggac gtacagattt atatcaaggc
     1801 aactatgaaa cattagtcga ctctattaaa gataaattat ttagtttaga cgagcaatta
     1861 ccgttatatc caggtcatgg gccttctaca acagttgaag atgaatatat gaatccgttt
     1921 ttagacggtc aaagttaaat caaagagcag gagaaaatgt ctatgaaaac ttttcttctg
     1981 ctctttttag atgtgtaatg cagtcatact aaacgagcac aaaaatttaa tgatttttta
     2041 atagagtaac aagtaatttc ctcgcctctt acgtgtatat atgcaagagg tgatttttat
     2101 gcaactacta ttagatcatg taatacaatt tgcacttcaa aatgaggcat cagacattca
     2161 ttttatccca tcacaatcac aagtcgaagt gaaactcaga gtgaaagatc aacttgtatt
     2221 atatgacaca ttaaatctag aaacgtatca aaaattgtta actttgttga aataccaagc
     2281 tggattagat atttcgacac gccacaaagc gcaaagtggg cgctatattt atgaacataa
     2341 agcgttatat tatttaagag tgtccacgtt acctttaaac ttaggtactg aaagttgtgt
     2401 tattcgtatt acaccccaat attttcaaaa tgcgaaagct catagtgtat tagacatcaa
     2461 atctaatatg gagaaaaagc aaggtttaat tctgtttagc gggcctacag gtgcaggaaa
     2521 gagcacgtta atgtatcaaa tggtcgtcta tgctaaacaa aagttaaacc tgaatattat
     2581 cacaatagaa gacccggtcg agcagcttgt gaacggcatt acgcaaattt ccgttaacga
     2641 aaaagctgat attacgtatg gatcgtcgtt aaaagcaatt cttcgttgtg atccagatgt
     2701 catcttaatt ggtgagattc gtgacagtca tattgcaagg gacgttatac aagcgagttt
     2761 aagtgggcat ttagtattgt cgacgataca cgccaatgat tgtcaagggg tgctccttag
     2821 actgattgaa atgggactct ctcaccaaga tttatctcaa tctatcaatc tcatcatcaa
     2881 tcaaagactc attacaacaa aaaacgacca gcgacaactc gtctatgaaa cgatggatca
     2941 acaggagatt cattactttt tgaataataa cttccaacta cctactgctt tcacaagcct
     3001 ttctcataag cttcaacttc tgaataaaga gggggttata gatgaaaaga ttttacgaaa
     3061 gtatacgatt taaacgcacg ttaagaaaac ttcatgtgca acacttactc attatggagc
     3121 gcctctatca attattatta catggtttta cttttgctga agcgatgtta tttatatatg
     3181 aacaactcaa tatacgacat cctacatttg aaaatcaact catcgaaaaa ttaaagggag
     3241 gtgcaaattg ctatgacatt tttcggatgt ttggttatcc tgaaaccatt ttgatgcagc
     3301 tttattttgc tgaacggtat ggatcactac ccgaaacgtt aaaattgtgt catcagtttt
     3361 ataccaaaaa ccgcaaactt aaaaaacagc tgattaaaac tatccaatat ccgatcgtac
     3421 tcattttaat ctttctcgcg ctgattgtga ctttgaatca cacggtcatg caacaatttg
     3481 accaaatgta tgaaacgatg caattgaatc aatcctcatt gcaatatatt gttaagatgt
     3541 tcattcaaaa cttcccagcc atcttcttaa tcatattact cgtgattgtt tcaacttatt
     3601 atattgtcaa attacgtttg aaccatctcc caattaaacg ccaagttcat tttctaaccc
     3661 acctgcctat tttcaaaaga tattataaac tttttacaac ttaccacatg acgaaccaat
     3721 ttgtattatt ttttagaaat ggtattacat taaatgatat tgttaagatt tatttgaacc
     3781 aaaaggcaaa cctgttttta caatatatcg gacacacatt gaaagaacat cttcagcaag
     3841 gcgaatcttt ttctcacata ttacttcaat tagactgttt tgaacctcaa tttataagct
     3901 atatcaaaca aggtgaaaaa cgagataaat tggatattga gttagaagtc tatagcacat
     3961 tcttgttgga gcgtatagaa gcaatgattc accagcacat caaatggatc caacctatca
     4021 tgttcgcatt tattggtatt ttagtgctat ctgtctattt aattatgatg ttacctgttt
     4081 ttgaaatgat gcaagctatt aaagaatagg agcgattgac aatgattcaa caacttaaat
     4141 taaaattcaa caaaaagaaa ggttttacat taattgaaat gctacttgtt ctgttaatta
     4201 ttagtgtact attgattctc attatcccga atattgctaa gcagtcagat catatccaaa
     4261 aaacgggttg tgctgcacaa ttaaaaatgg tcgatagtca aatagaagcc tatgctttaa
     4321 agtttaacca caaaccgaat acgattgatg atttagttcg tgaaggctac attaaagaaa
     4381 gtcaaaaaac atgcaaatca ggtgaagaga tcacaatcag agatggcgaa gcagttgcgt
     4441 catgatggct ttacactcat tgagatgctg ttagtactcg ccattatctc tgtctttatt
     4501 tccataacta tggcgcatcc ccaattcaac ttgttccata attcgacaga atatgagatc
     4561 aaaaaactga caagtgaaat cgactattat caagcgtatg ccattaagag tcacgcgcct
     4621 gtcatgctac tttttcgtcc taaccgtaac gatattaaaa ttgagacaat tcacccacac
     4681 cgagtgacta cgattccact tgcaccgctt caattaaaga tgacttcaaa tattcatgcg
     4741 ctcatttttg ataaagacgg aaaagcgaat caatttggca cattacgttt tgaacatcaa
     4801 cagcgtgcct tttctcttat tttccatatt gaacaaggga ggtaccgtat atcttatcaa
     4861 tagtaaacaa gttcaaaata acatcaggct ttgtttttat agaaagtctt tttgcgatgt
     4921 ttctcctcag tatcatgatt ttacagcttc ttcctatgac gcaccaaatg gtcaaaacat
     4981 atcgtgaagc ggtggaagat ttaacgttaa aacgtacatt gtttgaagtc attcaacatc
     5041 aaattccaga aaagaagttg acggtgtctc attatgaaat tattccgaca gcacatcaat
     5101 tgtgtataca aaatcatcaa accaaacaaa aatattgcta tcgaaaagca gggcttcacg
     5161 ctcattgaaa gtctcgttgc tctagtaatt caaatgacta ttgtattact cataccctta
     5221 cttattttca gtttaggtca attaaaaacg acagtatttg aagatcgaac atatgatatc
     5281 gaactgatga ttaaggatat ctcacataca cttcatgcta aagatgtaaa agcaaagatg
     5341 attaaaaaga aagaactaga aataagagat tcgaatacag agattaatta caaattgcgc
     5401 aatcaaaaaa ttataaaaac tgttggtcat cgaggaaata ttacgatgtg taaccatgtt
     5461 gtagacgttc actttgaaaa attaactcat gatttaatgc taatgaaaat aacctaccag
     5521 gaagggacta caacacatga aaaagagatt ctattgtaaa cacggcttta ccttgccatt
     5581 attgtttatc attttatctg catattttgc ttttatctct ttttatttac tgatttatag
     5641 tctaaaatta caaactatag atgcgctgtc agatgactat gaatatcaaa tagcgcgaat
     5701 tatcgacaaa ggtgagtaat atatgaaatt aaaaatggat acacctcttc tattcatcgg
     5761 atttatgggt gcaggtaaaa caaccattgc agaaacacta gcagagagtt atcaatgttc
     5821 attcattgat ttggatgctt atatcgaaac tgaaacgcaa aaatcaattc cacaaatttt
     5881 tgaagaagaa ggcgaacaag gttttagacg gcatgaattt gaatgtttag aaaaagcaat
     5941 acaatcctat gatattattg cgacaggcgg cggcattctc acttatgacg cgacgtatca
     6001 atttcttaaa gaagcagaag tgaaagccat atgggttgat gcaccgattg aagcacttta
     6061 tgaaagggtt aaagacgata caaatcgacc taatgctaat aaaaaaagtt tcgaatcttt
     6121 aaaacacttg tattcgacgc gtatttcaag atataatgaa atcgcattca ttaagatttc
     6181 atcagcagca ccgttatcag aaacgcttaa tgaaattaaa attaaattgt ctgcgaatga
     6241 tcaatattag agagtatggg tacgactcat caccgaagga gcaagtaatg atagattacg
     6301 aatctctcag gtaaaaggat aatattgtga cgcattcctg aaggcatctc aacaggggag
     6361 tatgaaggta ctcctctgtt ttttattaca cattaggagg ggactacatg tcagaagaac
     6421 tcaagaaaac gtcactttac caacattacg ttgattcagg ggctaaaatt gttgaatttg
     6481 gtggttgggc gatgccagtt caattctcaa gtattaaaga agaacacaac gcggtacgta
     6541 ctaacgttgg cttattcgat gtgagccaca tgggggaaat tcgcattgaa ggtccagaag
     6601 ccgcacacct tgttcaatat gtactttcta acgatacaaa ccaactgaca ttatctaaag
     6661 ctcaatatac ggctttatgt aatgaagaag gtggtgtcat tgatgattta gtcatttatc
     6721 aacttggaga aacgcaatat ttattagtcg ttaatgctgc taacgttgat aaagattacg
     6781 actggattgt acaacatagt agtcgctttg acgctacagt gacaaatgta tccgatcaat
     6841 atggtcagct ggcattacaa ggtccaaatg caagacgaat cattcaagac aatgtttctg
     6901 aagatgtcag tgaaatgggt atgttcgaat ttaagcaaaa tgtcaaaatc ttcggtaaaa
     6961 atgtgattct ctcacaatct ggatatacag gtgaagatgg ctttgaaatt tattgtgaca
     7021 gtgaggatgt cactacaata tgggacgcac ttttatcaaa agatgtgacg ccatgtggtt
     7081 taggcgcgcg tgatacgtta cgtttagaag caggattacc acttcacgga caagacttat
     7141 ctgaatctat cacaccttat gaggggggga tcgcttttgc agctaaacca ttaatagagg
     7201 aagattttat tggtaaatct gtacttcaat cacaaaaaga gaatggtgca ccaagacgta
     7261 cagtaggcct tcgtatgatt gataaaggca ttcctagaac tggatacacg atttatgatt
     7321 tagacggcaa cgaaattggt gaagtgactt caggtacaca atcaccatct acaggtcatg
     7381 ctatcggtat gggcatcatt gcacgtgatg cttttgaaat ggggaaagaa gtcgttgtac
     7441 aagtgagaaa acgtcaagtg aaagcgaaaa ttgttaaaaa gaatcaaatt gaaagatagg
     7501 gagtgaataa agtgagtcat cgttatattc cattaactga aaaagacgag caagaaatgt
     7561 tagagacgat tggtgttaaa tctattcaag aactatacag tgatgttcct gaagatgtgt
     7621 tattaagcag agatttaaac attgcagatg cagagcctga aacacaatta ttgaagcgat
     7681 taacacgtat tgcaaataaa aatattacaa aagaaacaca tacatcattt ttaggtgcag
     7741 gcgtttatga ccattatgca ccagctgttg tagatgcgat gatttctaga tctgaattct
     7801 acactgccta tacaccatat caacctgaaa tttcacaagg ggaattacaa gcaatttttg
     7861 aattccaaac tatgatttgt gagttaactg cgatggacgt tgcgaactca tctatgtatg
     7921 acggtatgac aagttttgcc gaagcgtgtt tattagcgtg gggtaacacg aagaaaaata
     7981 agattgttgt atctaagggt ctacattatc aagctttaca agtgttaaat acttattcaa
     8041 aaattcgcga acaatatgaa gtcgttacag tagatttaga tggcactgtg acagacttga
     8101 aaaagttaga agcagctatt gatgatgaga cggcagctgt tgcagtacag tatccaaact
     8161 tctatggctc aattgaagat ttagaagcga ttcaaacatt gattgccgat aaaaaagcgc
     8221 tctttatcgt atatgcgaat cctttatctt taggtttatt aacgcctcca ggagaattcg
     8281 gcgcagatat cgttgtaggt gatacacaag tattcggaat ccctacacaa ttcggtggtc
     8341 cgcactgtgg atattttgca acaacgaaaa aattaatgcg taaaattcct ggccgtcttg
     8401 taggtcaaac gacagatgat gaaggcaatc gcggttttgt attaacgtta caagcacgtg
     8461 aacaacatat ccgtcgtgaa actgcgacat ctaatatttg ttcaaaccaa gcactgaatg
     8521 cattagcttc ttcaattgca atgtcagcgt taggtaaaca agggcttcaa gaaattgccg
     8581 ttcaaaacat ggaaaatgcc aactatgcca aagaggaatt taaaaataac ggtttcactg
     8641 ttttagacgg catatcttat aacgaatttg tcgttcgctt tgatcgttca attgctgaag
     8701 tgaaccgtgc cctcctagat gaaggtatta ttggtggttt cgacttaagt gtagttgatg
     8761 atacgtttga aaaccacatg ctcgttgctg taacggaatt gagaacaaaa gaagaaatcg
     8821 atacatttgt gcagaaagct ggtgaaatca atggtaagta aatctagtcc attaattttt
     8881 gaacgttcta gaaaaggtcg ctttgcatat tctttaccgc aaagagaaat tgataacgat
     8941 gttacgaatc aacttctcga ttcaaaattc attcgtaaaa ataaagctga atttcctgaa
     9001 gtatcagaac ttgatttaat tcgtcattac actgagcttt cgaataaaaa ctttggcgtt
     9061 gactcaggat tctatccatt aggttcgtgt acaatgaaat ataatcctaa aatcaatgaa
     9121 aaagttgcac gtattccagg atttactgaa gcacacccat tacaagatga ggatcaaatt
     9181 caaggtgcgt tagaaatcat ttacagcttg caagaagaat taaaagaaat tacaggaatg
     9241 gatgaaattt cactccaacc tgcagcgggc gcacatggtg aatggacagc actgatgatt
     9301 ttcaaggcat atcacctaca aaatggcgat gcagaaagag atgaagtcat tgtacctgac
     9361 tcagcgcatg gtacgaatcc agcttctgca gcgtttgctg gtttcaaatc tgtcacagtt
     9421 aagtcgaatg aaaaaggtga agtagatatc gaccacctaa aagaagtcgt gagtgataaa
     9481 acagctgcaa ttatgttaac aaacccgaat acattgggta tttttgaaac gaatattatg
     9541 gaaatccgcg atattgtgca tgaagcaggg ggcttactat actacgatgg cgctaacctc
     9601 aatgcaatta tggataaagt acgtccagga gacatgggat ttgatgctgt tcaccttaat
     9661 ttacacaaaa catttacagg gcctcatggc ggtggtggtc caggttcagg tccaatcggc
     9721 gtgaaaaaag agttgcgtga ttacttaccg aaaccactcg ttgtgaaaaa tggcgaccgt
     9781 tttgagtatg ataatgacat cccatattcc attggacgtg tgaaaccatt ctacggcaac
     9841 ttcggtattt atttacgtgc ttatacgtat attcgtacaa tgggttatca aggattgaaa
     9901 gaagtgtctg aagcggctgt gttaaatgcg aactacatga aagcgcgttt aaaagatacg
     9961 ttcgttattc catttgatca atattgtaaa catgaatttg tattaagtgg tacgaagcaa
    10021 aagaaactgg gtgtacgtac tttagatatg gcgaaacgtt tattagactt tggcgttcat
    10081 ccacctacag tttatttccc actcattgtt gatgaaggta tgatgatcga accgacagaa
    10141 acagaatcta aagaaacgct agactatttt tgtgatgcct taatccaaat tgcgaaagaa
    10201 gctgaggaag atccagataa agtgttagaa gcaccacata caacaattat cgatcgtttg
    10261 gatgaaacta cagcagcacg taagccaatt ttaaaatttg agaacttaaa agaagaaaag
    10321 taactagatt ttacgacctg tttattgttt ctaatcgtaa acagagggat gggacataaa
    10381 aatttttgat gcccacccct gtttttattt gaacgtgata tttattgtgt gattcagcgt
    10441 aaaatgctaa aaaataggaa ttgcgaacat ttgttctaaa ccttaaaaaa cgcagcatca
    10501 tggctattct ttctttttaa gcgtagtatt gtctactttt atcttttcga tctatccatg
    10561 ctttttcaaa aatttataaa tgtgatagaa agtcaacata ctacgattct gatttaatca
    10621 aacacataaa aaagagctag attatccaca tttttactgg atccactagc tctttttact
    10681 attttttaga tttaatcttg cccgtccatt ttttgtagcc gccttttaac atgtacaagt
    10741 tcgtatatcc ttttttctta agtgtacgtg cagctcgata acttgcgata ccatttgcat
    10801 caacaagata gatgggttga tcttttctta atccttggta tcgttgacga aacattgtca
    10861 tagggatatt tcgtgcacca ataatatgac cataatcata gtctgccttt tctctaagat
    10921 cgatcacttg tgcttttcta ataccttctt gaaattcttc ttggtttaat tctgttactg
    10981 atcgcttatt aatgataaag ttcgttacca tccaaatgat gaccaatgct aacacaatta
    11041 aaacgattaa tgtcatgtta ctcatcttgc atcctcccta aaataccgat attattatta
    11101 taagactgat agactaattt atcaaaattt ttatgtgtga catatgttgg caattttaaa
    11161 ttttttgaaa cataacatat gcccgatgag atttcatagg gaggctttat agcaaatgac
    11221 agaaacttgg cattttatga atacaggaag tcatcatcca tactacaata tggcattgga
    11281 tgaggctttg ttaaattttg tatcaagagg agaaattgat ccggtcgttc gattctacac
    11341 ttggaatcca ccaacgttat caattggtta tttccaacga ctctccaaag aaattgacat
    11401 cgaaaaggtc aaagaaaagg gctacggttt agtgagacgc caaacaggag gccgtggtgt
    11461 tttacatgat aaagaattaa cttatagtgt gattgtacca gaagctcatc ctgatatgcc
    11521 tcaaaccgtt actgaagcct atcgtgtgat ttcaggtggt ttactagaag gctttaaatc
    11581 attaggcttt gatgcacatt tcgcggtacc acgttcaaaa gaagagcgag agaagctcaa
    11641 acaaccgaga agttctgttt gttttgatgc accaagttgg tatgaactcg ttgttgaagg
    11701 taaaaaaatc gctggcagtg ctcaaacgag acaaaagggc gtgattttac agcacggttc
    11761 gattcttcaa gatgtggata ttgatgactt gttcgacatg tttattttca aaaacgagag
    11821 attgaaagca aaaatgaaag aagcctttgt cgaaaaagca gtggccatta atgatttatc
    11881 aaatgaaaca atcactttag cacaaatgga agtggcgttt aaagaaggtt tcaaaaaagc
    11941 actcgatatt gaatttaaac cgctagaatt aacagtagcg caacaagatg aagtaaaagc
    12001 attagaagaa aaatatcgtt cagaggcatt tttatatcgc aaataatcat caggtttaat
    12061 cactgtaaat taaaaggctg gaaaacgctc aatgatatgc gcccagcctt ataatattgt
    12121 taacttcaat ttttctcaat aagtgattct taaacacgca cttatcgacg tcctttgaat
    12181 ttatttttcc aaacacgctt tttgtaatcc cgttgatctg gcgttaaaaa gaaaaagaaa
    12241 tagactaaat agatgatgcc gacaataata gctactgtaa
//
LOCUS       DANHOL010000069        12068 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.069, whole genome shotgun sequence.
ACCESSION   DANHOL010000069 DANHOL010000000
VERSION     DANHOL010000069.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 12068)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12068)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12068
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.069"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            79..1089
                     /locus_tag="PTC08_001384"
     CDS             79..1089
                     /locus_tag="PTC08_001384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase family protein"
                     /protein_id="HDK5682896.1"
                     /translation="MAQTKKRDAFFDNARAILIFLVVFGHLIQPYTDAHPTVYALYLL
                     IYSFHMPAFLFISGYFAKNVGRAGYIEKVGKKLLGPYLIFFAFFSIYYFITGKNSSLD
                     LDPFDPVFALWFLLTLFFFNVIIVIVRQFKPIYVLPIAILIAVLAGYSTDVNGYLSWS
                     RTLVFFPIFYIGYIMDGGFSRYIRLRRFMPVSVMVLVSFFIFYTVHPIDSDWLLASSP
                     YKNIEGTEFLFSPLKRLSLYIIILGTMCAFLNLVPRTHHAFTYIGSRTMYVYLLHGIF
                     IGFIRGHQIYPFIEQPWLGLFYNFLLACFIVWIWSSSFVAKWTNPVVHLQRPSAFKPY
                     DQ"
     gene            1204..2364
                     /locus_tag="PTC08_001385"
     CDS             1204..2364
                     /locus_tag="PTC08_001385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HDK5682897.1"
                     /translation="MKLQLNTYAQFLKAPSIRQFSSKINEMDDVINLTIGQPDFQMPD
                     VVKQAYQDAIANDYTTYSHNKGRRDTREAVAHYYQSRFNVHFDPEEIIITNGASEALD
                     TALRCIINPGDEILLPGPVYAGYIPLIQTLGGVPVFIDTRETGFKVTPEAIQQHMTPR
                     SRAILLNYPSNPTGAILTAEEVTAIVDVLKTHPLFVISDEIYAENTFGHTHTSFAQFD
                     EIRDQLLLINGLSKSHSATGIRIGFLSGPQYLIDKLTFMHAYNCICANVPAQMATIAA
                     LREAVDAPQVMNQAYVERRDYLVNALQSMGFRLDGVPQGAFYIFPNIEAFAEDDFAFC
                     VDVLENAGVAMVPGSAFTDFGKGYVRISYAYEMTQLQEGMARLRQYLEARYN"
     gene            complement(2553..3371)
                     /gene="menB"
                     /locus_tag="PTC08_001386"
     CDS             complement(2553..3371)
                     /gene="menB"
                     /locus_tag="PTC08_001386"
                     /EC_number="4.1.3.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015899909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-dihydroxy-2-naphthoyl-CoA synthase"
                     /protein_id="HDK5682898.1"
                     /translation="MERQWETLKEYKEIKYEFFEGIAKVTINRPEVHNAFTPNTVQEM
                     IDAFTRARDDERVGVIVLTGEGDKAFCSGGDQKVRGHGGYVGDDQIPRLNVLDLQRLI
                     RIIPKPVIAMVKGYAIGGGNVLQVVCDLTIAADNAKFGQTGPKVGSFDAGYGSGYLAR
                     IVGHKKAREIWYLCRQYDAQQALDMGMANTVVPLADIEDETVQWCKEIMRHSPTALRF
                     LKAAMNADTDGLAGLQQFAGDATLLYYTTDEAKEGRDAFKEKREPDFDQFPKFP"
     gene            complement(3388..4179)
                     /gene="menH"
                     /locus_tag="PTC08_001387"
     CDS             complement(3388..4179)
                     /gene="menH"
                     /locus_tag="PTC08_001387"
                     /EC_number="4.2.99.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020220255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-succinyl-6-hydroxy-2,
                     4-cyclohexadiene-1-carboxylate synthase"
                     /protein_id="HDK5682899.1"
                     /translation="MLHYNWYAAQSETNKMIVLLHGFISDQRTFSSHIEPLTQAAHVL
                     CVDLPGHGQDQSPEEVVWDFEWICTQLHAVLAQFKGYTLYLHGYSMGARVALAYALQY
                     QDALAGVVLESGSPGIEDDEARLERQQVDAARARVLEIASIEVFVNDWEKLPLFQTQR
                     FLTETTRQHIRELRLAQQPKRLAKALRDYGTGHMPNLWPQLASLKLPVQLIVGEWDEK
                     FMHIAERMSDGLSEAQLTVVSQVGHTVNVEDGDKFDTILLEFIKG"
     gene            complement(4166..5836)
                     /gene="menD"
                     /locus_tag="PTC08_001388"
     CDS             complement(4166..5836)
                     /gene="menD"
                     /locus_tag="PTC08_001388"
                     /EC_number="2.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-succinyl-5-enolpyruvyl-6-hydroxy-3-
                     cyclohexene-1-carboxylic-acid synthase"
                     /protein_id="HDK5682900.1"
                     /translation="MTNQRFLTEQVFHFVSELYAYGLREVVISPGSRSTPLALAFECH
                     PYIQTWIHPDERSAAFFALGLIKGSQRPVAILCTSGTAAANYVPAIAESHISRLPLIV
                     LTSDRPHELRGVGAPQAINQVNMFQNYVRFQFDLPIADGTPNTLAVNKYQLQKASQFF
                     DGPHQGPVHFNLPFREPLTPDLSRQDLLTSLHYERPHYQKTMDFSAILPVLKQSKGLI
                     VVGDMQHQDISQILTFATIYDLPILADPLNGIRATQHPNVVTTYDLLLRSGLNLSADF
                     VIRVGKPVVSKKLNQWLKTTDATQILVQNNADIDAFPKNPDYFFEMSANDFFRALGDI
                     PAAYRKMWLRQWQSMEEQARHTIKAHQKTANDEAAYVSRVLDKLGADDVLFVSNSMPI
                     RDIDNLYIDHQARIYANRGANGIDGVVSTALGMAVHQKVTLLIGDIAFYHDMNGLLMS
                     KLNDIHMNIVLLNNDGGGIFSYLPQKEGAPEHFERLFGTPTGLNFEHAALLYDFNYKR
                     FQDLQSFEYSHLTTMTPTLFEVVTQREANYEAHQNLYQKLSEVVNVTL"
     gene            complement(5829..7187)
                     /locus_tag="PTC08_001389"
     CDS             complement(5829..7187)
                     /locus_tag="PTC08_001389"
                     /EC_number="5.4.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismate synthase"
                     /protein_id="HDK5682901.1"
                     /translation="MSVDVCEQAIIDAVQQTKQRWVSVEVKLEQQLDPITLFDMSKED
                     AGDRFYFRLNDNETSFFGYRVAAKIKNDFTNKRSIFKEWEKFKDDIALIHPDSERHHL
                     RICGGFQFSTKRMGDEWRRFGVNHFILPEVLISQVNQETFLTYTVQKEAFSIEQFYEL
                     VEKLNHLPRVVVQNTTPPQIKRIEDIYKDEWEALVEETTAKLAHDEKVVLSRRRMVQF
                     DADIEIGAVLYRALKNEKNSYLFVLESEDDIFISQTPEQLFKVTNGMLSTKAVAGTIP
                     RTHNEAQDQARINALLKNEKNLIEHGIVVESILEDIRPFIQYADYNREPQVLKNDHLY
                     HLYTEIGGPLAHKSYIELIDDLHPTPALGGYPKARALEYIEAHEFGARGLYGAPVGMI
                     DMYDDCEFIVAIRSMLMNHQQALLFAGAGIVKDSDAAEEVAETALKFKPMMVALGVSE
                     HD"
     gene            7361..8299
                     /locus_tag="PTC08_001390"
     CDS             7361..8299
                     /locus_tag="PTC08_001390"
                     /EC_number="2.5.1.74"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-dihydroxy-2-naphthoate
                     polyprenyltransferase"
                     /protein_id="HDK5682902.1"
                     /translation="MTSQFEKHSTFHKYWQLMRPHTLTASVVPVLVGTATAKLFLLGS
                     EDHLHFGLFLAMLFACLLIQAATNMFNEYYDFKKGLDDHESVGIGGAIVRNGMTPQHV
                     LKLAIIFYIIAAILGLYLAIQSSFWLIPVGLLCMAIGYLYTGGPFPISWTPFGELFSG
                     VFMGMIIIVIAFYIQTGHLQNYAFWISIPIVITIGLINMSNNIRDRVKDSQSGRRTLP
                     ILLGKRGSLIFLATFYAIAYLFVIYTALFKDGGSLFYLLVLLSFPLPVKVYRRFQKND
                     TPQSMMPAMAASGKTNTLFGLLYALGIYISALLGGV"
     gene            complement(8615..9379)
                     /gene="fetB"
                     /locus_tag="PTC08_001391"
     CDS             complement(8615..9379)
                     /gene="fetB"
                     /locus_tag="PTC08_001391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron export ABC transporter permease subunit
                     FetB"
                     /protein_id="HDK5682903.1"
                     /translation="MMSTTSLLLTSLLLLIPILVSFKERLHIAKDLIIAAIRAVIQLV
                     IIGYLLEFVFKLETTWIVLLLILVIMVNAAANTQKRKPEVVQHAFWISLAGILTGSIL
                     SLGGVLLTGAIDFKPNEIIPVAGMVGSNGMIAINLSYQNLNRIFTKETAIIEAKLSLG
                     ASPAMAAKEAIRESVKVAIVPTIDSVKTYGLVSIPGMMTGMIIAGVPPIQAIKFQLMV
                     VFIHTTATIISALVATYLTYRQFFNARHQLVQASQN"
     gene            complement(9376..10026)
                     /locus_tag="PTC08_001392"
     CDS             complement(9376..10026)
                     /locus_tag="PTC08_001392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HDK5682904.1"
                     /translation="MLELTNVSYESGERKILYNISCHIDKGEAVAIVGPSGSGKSTLL
                     RLIADLMSPTSGNIEFKGQPYAHYSPEILRQHISYLPQSVELFGETIQDNLAFPAKVR
                     QVSFNKSKAKKLLEKVGLKKYKLSDKVQHMSGGEKQRITIARQLMFTPDILMLDEATS
                     ALDDKSSRQIEELVFDLVQEGMSVLWITHNDAQSQRQFHRKMEIRNGMLTREARLS"
     gene            complement(10019..10594)
                     /locus_tag="PTC08_001393"
     CDS             complement(10019..10594)
                     /locus_tag="PTC08_001393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDK5682905.1"
                     /translation="MIRKATPKDARAIAELTYLVWQDMELEIVRRYEKETVIAALVKS
                     ATEVHYRNHIEHVDIYEVAGQVAGILIAYPGQYEAAYEQAWQNLTLAEKIQLETDTPL
                     PVLEAERGDVYIETIATFPEFRGRGIATKLIQARLQSNPEVTWGLNCDEQNERAYQLY
                     CKLGFQEKMKKVLYGHEYRYMIYQNEGNAYA"
     gene            10733..11143
                     /locus_tag="PTC08_001394"
     CDS             10733..11143
                     /locus_tag="PTC08_001394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YolD-like family protein"
                     /protein_id="HDK5682906.1"
                     /translation="MHDHTLPTAYQSETDYRKIPRQYLNTRIPRGRGIVKWAPFATLP
                     EQFEAIKQFEANQLKIDRPDLSEDQINELNQMLHLKIAHNAFSKIHYWRARHIHTIQG
                     YIASIDTLTNELVLTNERRTDRLVIGLNELYAIE"
     gene            complement(11290..11892)
                     /locus_tag="PTC08_001395"
     CDS             complement(11290..11892)
                     /locus_tag="PTC08_001395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease"
                     /protein_id="HDK5682907.1"
                     /translation="MKKINKPLLWFILSFIAFHIILMLLWGEHGVYWQLYTGIMLIAG
                     ISYVFYQRDFASKRLLTSIAIGLATGVALVLIQVIFSWITSELTYASLIKQLSRTGVY
                     FKWQILVTLLFVMPCHELYMRTILQKGIVRMTSKPWLAIIIGALASGSFFIYLDQWWI
                     VTFIFVCQLLLGFSYMYTRRIITTTVAQIVAVVILLIFHG"
     gene            complement(11899..>12068)
                     /locus_tag="PTC08_001396"
     CDS             complement(11899..>12068)
                     /locus_tag="PTC08_001396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015899900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF2187 family protein"
                     /protein_id="HDK5682908.1"
                     /translation="GDIVEFYDGIRGKVEKINDNSVIVDLTIMENFSELDLPEKTVIN
                     HKRYKIIEQKG"
BASE COUNT         3551 a         2564 c         2102 g         3851 t
ORIGIN      
        1 atattcattt tcgttgcatt atgaaaagga tttataataa tctaatgttg atatttaaaa
       61 aaggagacac accgtattat ggcacaaact aaaaagagag atgcattttt tgataatgcg
      121 cgtgcaatct taatatttct tgttgtgttt ggacatttaa tacaacctta tactgatgca
      181 catcccacag tatatgcact ttatttactc atttatagct ttcacatgcc agcttttcta
      241 tttatttcgg gttactttgc taaaaatgtc ggacgtgcgg gttatatcga aaaagtcggt
      301 aaaaagttgt taggccccta cttaatcttt ttcgcatttt tctcgattta ttactttatt
      361 actggtaaaa atagttcact agacttagat ccatttgacc cagtatttgc actttggttt
      421 ttattaacac tctttttctt caatgtcatt attgtcattg tgcgtcaatt caaaccgatt
      481 tacgtgcttc cgattgcgat cttaattgca gtattggcgg gttattccac tgatgtcaac
      541 gggtatctga gctggtcacg aacactggtc tttttcccta ttttctacat cggttacatt
      601 atggatggtg gatttagccg ttatatccga ttaagacgtt ttatgccagt atcggtgatg
      661 gtgttagtga gcttctttat tttttatacg gtacacccta tcgattcgga ctggttactc
      721 gcaagctcac cttataaaaa tattgaaggc actgaatttt tatttagccc attaaaaaga
      781 ttgagcttgt acatcattat tttagggacg atgtgtgcct ttcttaattt agtacctaga
      841 acgcatcatg catttacgta tattggctca cgcacaatgt atgtatactt acttcacggt
      901 atttttatcg gcttcattcg tggccatcaa atctatccat ttattgaaca gccttggtta
      961 ggattgtttt ataacttcct actcgcatgt tttatcgttt ggatatggtc gagtagcttt
     1021 gtggcgaaat ggacgaatcc tgtcgttcat ttacaacgac cttccgcatt taaaccttat
     1081 gaccaataaa caatgaagtt aacatgagaa tacatcgcct atagtcatca ctttacatta
     1141 gattttggct atacggtcgt gttattctaa atgttaactt ctcttttttt aggacgtgat
     1201 aggatgaaat tacaactcaa tacatacgca caatttttaa aagcacctag tatccgccag
     1261 ttttcaagta aaatcaatga aatggacgat gtgatcaatc tgacaattgg acaacctgat
     1321 tttcagatgc ctgatgtcgt taaacaagca tatcaagatg caattgcgaa tgattataca
     1381 acttattctc acaacaaagg tcgtcgtgac acacgtgaag ctgttgcaca ttattatcaa
     1441 tctcgcttca atgtgcattt tgatccggaa gaaatcatta ttacgaatgg tgcttctgaa
     1501 gcattggaca cggcactccg ttgtattatt aatccaggag acgaaatttt attacctgga
     1561 cctgtttatg cgggctatat tccattaatt caaacgttag gtggcgtacc tgtatttatt
     1621 gatacacggg agacaggttt taaagtgacc cctgaagcga ttcaacaaca tatgacaccg
     1681 cgttcacgtg cgatattact gaactaccct tccaatccaa ctggagcgat attgacggct
     1741 gaagaagtga cagctattgt cgacgtatta aagacacatc ctctatttgt gataagcgat
     1801 gaaatttatg ccgagaacac tttcggtcat acgcatacat ctttcgcgca atttgatgaa
     1861 attcgtgatc aattattgtt aatcaatggt ttaagtaaat ctcattcagc tacagggatt
     1921 cgtattggtt ttctatcagg tccacaatac ttaatcgaca agctgacatt tatgcatgcg
     1981 tacaattgta tttgtgccaa cgtacccgca caaatggcaa ctatagctgc attacgtgaa
     2041 gccgttgatg cacctcaagt gatgaatcaa gcttatgtcg aacgtcgaga ttacctcgtc
     2101 aacgcattac aatcgatggg ctttcgatta gacggcgtac cacagggggc attttacatt
     2161 tttccaaata tcgaagcctt tgccgaagat gactttgcgt tctgtgtcga tgtattagaa
     2221 aatgcaggcg ttgcgatggt accgggttcc gcatttactg atttcggtaa aggctacgtc
     2281 cgcatctcct acgcttatga aatgacgcaa ttgcaagaag gtatggcacg tttacgacag
     2341 tatttggaag cgcgttataa ttaacttaat acacgataag ggtagcggat gttgtaagat
     2401 cattcaacaa caatatctgc tactttttta gtgatcattt ttaatgtcag actttatgtt
     2461 caaaaagata ttcaatgtca aaacaaaaaa gcccattcta ctcactcaat gaataaaacg
     2521 gacttttcat cttacatctt taatttaaag acttatggga atttagggaa ctgatcaaag
     2581 tcaggttcac gtttttcttt aaacgcgtca cggccttctt tcgcttcatc agttgtgtag
     2641 tataacaatg tcgcatcgcc agcgaattgt tgtaaaccag ctaagccatc tgtatctgcg
     2701 ttcatcgctg cttttaagaa acgtaacgct gttggtgaat gacgcatgat ttctttacac
     2761 cattgtactg tttcatcttc aatgtcagca agtggtacaa ctgtgttcgc catacccata
     2821 tccaacgctt gttgtgcatc gtattgacgg cataaatacc atatttcacg tgctttttta
     2881 tggccgacaa tgcgcgctaa ataacctgaa ccgtaacctg catcaaatga acctacttta
     2941 ggacctgtct gaccaaattt ggcgttatca gccgcaattg ttaagtcaca tacgacttga
     3001 aggacgttac cgccaccaat ggcataccct tttaccattg cgataactgg ttttggaatg
     3061 atacgaatta aacgttgtaa gtctaacaca tttaaacgtg gaatttggtc atcaccgaca
     3121 taaccgccat ggccacgtac tttttgatct ccaccagaac agaacgcttt gtcgccttca
     3181 cccgttaata cgatgacacc tacacgctcg tcatctcttg cacgtgtaaa tgcatcaatc
     3241 atttcttgta ctgtattcgg tgtgaacgca ttatgtactt cgggacgatt aattgttact
     3301 ttcgcaatcc cttcaaaaaa ttcatatttg atttctttat attcttttaa tgtttcccat
     3361 tgtctttcca tggtggacct cctcaagtta accttttata aactctaata gtattgtatc
     3421 aaatttatcg ccatcttcca catttactgt atggccgact tgcgatacga ctgtcaattg
     3481 tgcctctgaa agcccgtcag acatacgttc agcaatatgc ataaactttt catcccattc
     3541 ccctacgatg agttgcacag gcaatttcaa acttgctaat tgtggccata agttcggcat
     3601 atgtcctgta ccataatcac gcaatgcttt cgctaatcgc ttcggttgtt gtgcaagtct
     3661 cagctcgcga atatgttggc gtgttgtctc cgttaaaaag cgttgtgtct ggaataatgg
     3721 caatttttcc caatcattca caaacacttc aatgctcgca atttcaagga cgcgcgcccg
     3781 ggctgcatcc acttgttgac gttcaagacg tgcttcatca tcttcaattc caggtgagcc
     3841 actttctaac acgacacctg ccaatgcatc ttgatattgc aatgcataag ctagcgcaac
     3901 acgtgccccc attgaatagc catgaaggta tagcgtgtag cctttgaact gtgccaacac
     3961 agcatgtaat tgcgtacata tccactcaaa atcccacaca acctcttctg gcgattgatc
     4021 ttgcccgtgg ccaggcaaat ccacacataa gacatgcgcc gcttgggtca atggctcaat
     4081 atgagatgaa aatgtgcgtt gatcactgat aaagccgtgt aagaggacaa tcattttgtt
     4141 cgtttctgac tgtgctgcat accagttata atgtaacatt cacaacttca ctcaatttct
     4201 gatataaatt ttgatgtgct tcgtaattgg cttcacgctg cgtcacaact tcaaataatg
     4261 tcggtgtcat cgtcgtcaaa tgactatatt cgaacgattg taagtcttgg aagcgtttat
     4321 agttaaagtc atacaacaat gctgcatgtt cgaagttcaa accagtcggc gtaccaaata
     4381 accgttcaaa atgttccggt gccccttctt tttgtggtaa ataagaaaaa atacccccac
     4441 cgtcattgtt caataagacg atgttcatat ggatatcgtt cagtttcgac attaatagcc
     4501 cgttcatgtc atgataaaat gcaatatcac ctataagtaa tgtcactttt tgatgtacag
     4561 ccataccgag tgctgtagaa acaacaccat caatgccgtt cgcccctcta ttggcataaa
     4621 tgcgtgcttg atggtcaata tataaattat cgatgtcacg aatcggcata ctattgctga
     4681 caaacaacac gtcgtcagcg cctaatttat cgagtacacg actgacatac gccgcttcat
     4741 cattcgccgt tttttgatgt gctttaatcg tatgacgcgc ttgttcttcc atactttgcc
     4801 attgtcgcag ccacattttt cgataagcag cagggatatc tcctaatgct ctgaaaaagt
     4861 cattggccga catttcaaaa aagtaatctg gatttttcgg gaacgcatca atatctgcat
     4921 tgttttgaac taaaatttgt gtcgcatctg tcgttttcaa ccattgattt aactttttag
     4981 agacgactgg tttaccgaca cgaatgacaa aatcagccga caagttgagt cctgagcgca
     5041 acaataaatc atacgtcgtg acgacattcg gatgttgtgt cgcgcgaata ccattgagtg
     5101 ggtcagccaa tatcggcaag tcatatatcg tcgcgaaagt taaaatttgt gaaatatctt
     5161 gatgctgcat gtcccctaca acaatcagtc ctttagattg cttcaacact ggaagaatcg
     5221 cactgaagtc catcgttttt tgatagtgtg gacgttcata atgcaatgac gtcaacaaat
     5281 cttgacgtga caaatccggt gttaacggtt cacggaaagg taaattgaaa tgcactggac
     5341 cttggtgagg gccatcgaaa aactgactcg ccttttgtaa ttggtatttg ttcacagcca
     5401 atgtattcgg cgtgccatct gcaatcggta aatcaaattg gaaacgcaca tagttttgaa
     5461 acatattgac ttgattgatt gcttgtggcg cacctacacc tcttaattca tgcggtcgat
     5521 cgcttgtcag tacaataagg ggcaaacgac taatatgact ttcagcaata gcaggcacat
     5581 aatttgcagc agctgtgcca gatgtacaaa gaattgcaac cggacgttga cttcctttga
     5641 ttaaacctaa cgcaaaaaaa gccgcacttc tttcatcagg atggatccac gtttgaatat
     5701 acggatgaca ttcaaacgcg agtgctaaag gcgtggagcg tgaccccgga ctgatcacga
     5761 cttcacgtaa tccatatgca tataattctg atacaaaatg aaacacttgc tccgtcaaaa
     5821 aacgttgatt agtcatgttc actcacccct aaagctacca tcatcggttt gaattttaat
     5881 gctgtttcag cgacttcttc tgctgcatcc gaatctttta caatgcccgc acctgcaaac
     5941 agtaacgctt gctgatgatt cattaacatc gagcgaatgg ccacgataaa ttcacaatca
     6001 tcatacatat cgatcatacc gactggcgca ccataaaggc cacgtgcacc aaattcatgc
     6061 gcttcaatat attctaatgc acgtgctttc ggatacccgc ctaaagcagg tgttggatgt
     6121 aaatcatcta tcagctcaat atatgattta tgcgctaatg ggcctccaat ctcagtatat
     6181 aaatgatata aatggtcatt tttcaatact tgtggctcac gattgtaatc ggcatactga
     6241 ataaacggac gaatatcttc aagaatactt tcaacaacga taccatgttc aattaagttc
     6301 ttttcatttt ttaacaacgc attgatacgc gcctgatctt gggcttcgtt gtgtgttctt
     6361 ggaattgttc ccgcaacagc tttcgttgat aacatgccat ttgtaacctt aaataattgc
     6421 tcgggcgttt gagaaataaa aatatcatct tctgactcta acacgaataa ataactattt
     6481 ttttcatttt taagtgcacg atataacacg gctccgattt caatatccgc atcaaattgc
     6541 accatgcgac gacgagagag cacaaccttt tcatcatgcg ctaattttgc tgtcgtttcc
     6601 tcgactaatg cttcccactc atctttatat atatcttcaa tccgcttaat ctgtggcggt
     6661 gttgtatttt gcacgaccac acgcggtaaa tgatttaact tttcaactaa ttcataaaat
     6721 tgctcaatcg aaaacgcttc tttttgcaca gtatatgtta agaacgtttc ttgattgact
     6781 tgcgatatta agacttcagg taaaataaaa tgattcacac caaagcgacg ccattcatcc
     6841 cccatccgct tagtagaaaa ttgaaatcca ccgcaaatac gtaaatgatg gcgttcagaa
     6901 tcgggatgga ttaatgcgat atcatcttta aatttttccc attctttaaa aatagaacgt
     6961 ttatttgtaa aatcattttt tatttttgct gcaacacggt atccaaaaaa agaagtttcg
     7021 ttatcattta accgaaaata aaaacggtcc cctgcatctt ctttcgacat atcgaacaac
     7081 gtaatcggat ctaattgttg ttctaatttg acttcaactg agacccatcg ttgttttgtt
     7141 tgttgtaccg cgtcgatgat tgcctgttcg cagacatcaa cactcatccc atactcactt
     7201 ctttcatcat aatcaagttt tatccattat tacattttaa catttttaaa ggcgattgtg
     7261 tgcacaagtg tcttttccat aatattgtta ttgatttcat tgacgaactt ttttataata
     7321 tcaatgtaat ataaatatta taaaaaagag gttgactaac atgacgtctc aatttgaaaa
     7381 acattcaacg tttcacaaat attggcaact catgcgtcct catacattaa cagcatctgt
     7441 tgttcctgtt ttagtcggaa cagcgactgc aaaacttttt ttattaggta gcgaggacca
     7501 tctccatttc ggtttattct tagcaatgtt gttcgcttgt ttgttaattc aagccgcaac
     7561 gaatatgttc aatgaatact acgacttcaa aaaagggtta gatgaccatg aatcagtagg
     7621 tattggtggc gccatcgtac gtaacgggat gacaccccaa catgtattaa aacttgcaat
     7681 tattttttat atcattgcag caatacttgg gctttactta gcgattcaaa gttcattttg
     7741 gcttattcct gttggtttat tatgtatggc tattggttac ctctatacag gcggtccatt
     7801 cccaatctca tggacaccat ttggcgaatt attctcaggt gttttcatgg gtatgattat
     7861 tatcgtgatt gctttttaca tccaaacagg tcaccttcaa aattatgcat tttggattag
     7921 tattcctatt gtgattacaa ttgggctcat caacatgtca aacaacattc gtgaccgagt
     7981 taaagacagt caaagtggta gacgtacttt acctatttta ttaggaaaac gtggctcact
     8041 tatcttttta gcaacatttt acgcgattgc ctaccttttt gtcatttaca ctgcactttt
     8101 caaagatggt ggttcactgt tctatttact tgtattactg agtttcccat taccagtgaa
     8161 agtgtatcgt cgtttccaaa agaatgatac accgcaatca atgatgccgg caatggctgc
     8221 ttcaggtaaa acgaatacat tattcggtct actatacgca ttaggtattt acattagtgc
     8281 attgcttggt ggcgtataag ttaaaacact cgatagaatc gaagtcttag aataacaaag
     8341 gcttcgattc ttttttatag ttttatatat atcgtaccac actattcgct tacaaatgaa
     8401 aatgtattta cgaaatttta atatatctct actttaccat ttttatcatt catgtcatcc
     8461 tctatttgca tacgtaagat taaagaaaca ccacgctttt gatatcttca cgcactttgt
     8521 aaaaatcgga aagctcttct gaatgtcacg catactgtac cataacagta tgcatttatc
     8581 tcttaaacgt catgcctcaa aaacggtata ttagctaatt ctgagacgct tgtactaatt
     8641 gatggcgcgc attaaaaaat tgtcgatagg tcaaatacgt cgcaaccaat gctgaaataa
     8701 tcgtcgctgt agtatgaata aatacgacca ttaactgaaa cttaatcgct tgtatcggtg
     8761 gcacacctgc aataatcatg cccgtcatca tacctggaat cgataccagg ccatacgtct
     8821 tcacagaatc aatcgtcggc acaatcgcga ctttgacact ttctcttatc gcttcttttg
     8881 ccgccatagc tggacttgca cctaaagaaa gtttggcttc aatgatcgct gtctctttcg
     8941 taaagatacg atttaaattt tgataactta aattgatcgc aatcatgcca ttactaccga
     9001 ccatccccgc aacaggaata atttcattcg gcttaaaatc aatagcaccc gttaaaagca
     9061 cgccacctaa agataaaatt gagcctgtga gtatccctgc taaggatatc caaaacgcat
     9121 gctgcaccac ttctggtttt cgcttttgtg tattggcagc cgcgttaacc ataatgacta
     9181 aaatgagtaa cagtacaatc catgtcgttt ctaatttaaa aacaaattct agtaaataac
     9241 caataatcac taattgaatc actgcacgta tcgccgcaat gattaaatct ttagcaatat
     9301 gtaatcgctc tttaaacgaa actaaaatgg gaatgagtag caataatgat gtcaataata
     9361 gcgaagtcgt actcatcatg acaaacgcgc ctccctcgtt aacataccat tacgaatttc
     9421 cattttgcgg tgaaattggc gttgactttg tgcatcattg tgcgtaatcc acaaaacgga
     9481 catgccctct tgaactaaat caaacaccaa ttcttcaatt tgacgactgc tcttatcatc
     9541 taacgcactc gtcgcttcat caagcatcag tatatctggc gtaaacatga gctgacgtgc
     9601 aatcgtgatt cgttgttttt cacccccgga catatgttgc accttgtccg aaagtttgta
     9661 tttttttaaa cctacttttt ccaatagctt ctttgcttta gacttattaa acgaaacttg
     9721 acgcaccttt gccggaaaag ctaaattatc ttgaatcgtc tcaccaaaca attccacact
     9781 ttgcggcaaa taactaatat gctgtcttaa tatttcgggt gaatagtgtg cataaggttg
     9841 tcctttaaat tcaatatttc cactagttgg gctcattaaa tctgcaatca acctcaacag
     9901 cgtactttta ccacttccag acggcccgac aatagccacc gcttcacctt tgtcgatatg
     9961 acaactgata ttgtataaaa ttttgcgttc accgctttcg tagctgacat ttgttaactc
    10021 aagcataagc gttaccctca ttttggtaga tcatatagcg gtattcatgc ccataaagca
    10081 cttttttcat tttttcttga aatcccaact tacaatacaa ctgataggca cgttcatttt
    10141 gctcatcaca gttcaagccc catgtcactt ctggattcga ttggagccgt gcttgaatca
    10201 attttgttgc aatacctcga ccacgaaact cagggaaagt agcaatcgtt tcaatataaa
    10261 catctcctcg ctctgcctct aatacaggta atggcgtgtc tgtttctaat tgaatctttt
    10321 cggctaatgt taaattttgc caagcctgtt cgtatgccgc ttcgtactgg cctggatacg
    10381 caatcaagat acctgccact tgtcctgcga cttcataaat atctacgtgt tcaatatgat
    10441 tgcgataatg aacttctgtg gcgcttttaa caagtgctgc tatcacggtt tctttctcat
    10501 aacgacgcac aatttcaagt tccatatctt gccaaacgag gtatgttaac tctgcaatcg
    10561 cacgcgcatc tttgggtgtt gcttttctaa tcatatttga gtcacctcac tctttacatt
    10621 ttagcctatt tatctgatgt ttaaaaatac cccaacattt ctacaaacaa atgttctaaa
    10681 aatacttcac aaataagaac gggtgttcta taatcaggtt gaggtgattt ccatgcatga
    10741 tcatacgctc cctacagcat accaatctga aacagactat cgaaaaattc caagacaata
    10801 tcttaacact cgaattccta gagggcgcgg cattgtgaaa tgggcccctt tcgcaacatt
    10861 gcccgaacag tttgaagcaa ttaaacaatt cgaagccaat caacttaaaa ttgaccgtcc
    10921 tgacttaagc gaagatcaaa tcaatgaact gaaccaaatg ctgcatttaa aaatagcgca
    10981 caatgctttt agtaaaattc actattggcg cgctagacac atccatacta ttcaaggcta
    11041 tatcgcgagt atcgatacat tgacaaacga attagtgctc actaatgaac gacgcacaga
    11101 tcgattagtc atcggattaa acgaattgta tgcgattgaa tagtatcgcg tgattgactt
    11161 tattttatct tataccctga tttgaaaaaa gatgtcatca tttgattcaa aaagatgtat
    11221 tggctatgct ttttatcaca aaaaaacaca gcaaacattg cacgaataac aacatttact
    11281 gtgtaaggtt taaccatgaa aaatcaataa aatgacgacc gctacaattt gagcgactgt
    11341 tgtggtgata attcggcgtg tgtacatata actaaaaccg agtaacaatt ggcaaacaaa
    11401 aatgaatgtc acaatccacc attgatctaa atagataaaa aatgaacctg aagctaaagc
    11461 accgattatt atagcgagcc acggttttga agtcatacgc acgatgcctt tttgtaaaat
    11521 ggtacgcata tataattcat gacatggcat tacaaataat agcgtcacta aaatttgcca
    11581 tttaaaataa acacctgttc gtgataattg tttaattaac gaagcatacg tcagttctga
    11641 agtgatccat gagaaaatga cttgtatcag tacaagcgca acaccagtcg ctaaccctat
    11701 ggcaatggat gttaataatc gtttggaggc aaaatctctt tgataaaaga cataactaat
    11761 gcctgcgatt aacataattc ctgtatagag ttgccaatat acaccatgct caccccacaa
    11821 caacattaaa ataatgtgga aagcaataaa gctcagtata aaccaaagta gcggtttgtt
    11881 gatctttttc atatacgttt atcctttttg ttcaataatt ttatatctct tatgattaat
    11941 cactgttttt tcaggcaaat ctaactcgct gaaattttcc atgatcgtta aatcaacaat
    12001 gacagagtta tcattgattt tttcaacttt tcctcgtatc ccatcataga attctacgat
    12061 atctccta
//
LOCUS       DANHOL010000070        11920 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.070, whole genome shotgun sequence.
ACCESSION   DANHOL010000070 DANHOL010000000
VERSION     DANHOL010000070.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 11920)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11920)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11920
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.070"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            12..875
                     /locus_tag="PTC08_001397"
     CDS             12..875
                     /locus_tag="PTC08_001397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDK5682909.1"
                     /translation="MTTKIKRFDDITIQLYDKQYRDALYQFELNERQRIYSSLPKEVL
                     DDALNDDNRVANIVLNDQDEVIGFFVLHEHYQHEGYDTPYEVVYIRSLSINEAYQGNG
                     YGTKIMMTLPEYVQMIFPDFNHLYLVVDAENEAAWNVYERAGFMHTATKEEGHIGKER
                     LYYLDLDHKYVSSLKLIKGEGSKAGPIEIVNFILDGEKVGFLAIEAFNERLIIRALYV
                     DDAHRDTGIAQNALRQLATYVRKENHDTKVIEVTLFGPNHQLTPLFVKSNFVETLTTN
                     DYVTLEKYINY"
     gene            1144..1686
                     /locus_tag="PTC08_001398"
     CDS             1144..1686
                     /locus_tag="PTC08_001398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit delta"
                     /protein_id="HDK5682910.1"
                     /translation="MKLQDYTQEMVDEKSFIDMAYTLLSEQNATMNLYDIIDEFKRIG
                     HYEDAQIEDRIVQFYTDLNTDGRFLSVGDNVWGLRDWYSVDDIEEKIAPTIQKFDILD
                     EDDEEDKNLTLLGEDDLDGDDNIPNRTDDQEDLDDPEDERVEDEIEESDLVVEEDEED
                     IDETYDEDDELEVEEEEETF"
     gene            2096..3709
                     /locus_tag="PTC08_001399"
     CDS             2096..3709
                     /locus_tag="PTC08_001399"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase"
                     /protein_id="HDK5682911.1"
                     /translation="MTKFIFVTGGVVSSLGKGITAASLGRLLKDRGLKVTIQKFDPYL
                     NVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFIDINLNQYSNVTAGKVYSHVLQKE
                     RRGDYLGGTVQVIPHITNEIKSRLLLAGESTNADVVITEIGGTTGDIESLPFIEAIRQ
                     IKSDLGRDNVMYVHCTLLPYIKAAGEMKTKPTQHSVKELRGLGIQPDLIVVRTEYEMT
                     QDLKDKIALFCDIDKESVIECRDAESLYEIPLQLSHQNMDDIVIERLGLQVDRDTQLD
                     EWNHLLRVVNNLEGKVTIGLVGKYVSLQDAYLSVAESLKHAGYQFMKDIEIRWIDSSE
                     VNDDNAAEYLSDVDGILVPGGFGFRASEGKISAIKYAREQQIPFFGICLGMQLATVEY
                     ARHVVGLEGAHSAELDPNTPYPVIDLLPEQKDIEDLGGTLRLGLYPCTIQEGTLAEKI
                     YGKTEVEERHRHRYEFNNEYREQLEAAGMIFSGTSPDGRLVEMVELKEHPFFIACQFH
                     PEFLSRPNRPQPIFKSFIEAALLQQNKTK"
     gene            4152..5510
                     /gene="glpT"
                     /locus_tag="PTC08_001400"
     CDS             4152..5510
                     /gene="glpT"
                     /locus_tag="PTC08_001400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate transporter"
                     /protein_id="HDK5682912.1"
                     /translation="MFKFLKPPVAAAPVPESQQDETYKKLRLQVFIGIFLGYAGYYLL
                     RKNFSIAMPYLADMGFSKAELGFALSAISIAYGFSKFVMGTVSDRSNARIFLTLGLVL
                     TAIVNLLMGFIPALTSSVTIMFIMLFLNGWFQGMGWPPSGRVLVHWFSVSERGSKTAI
                     WNVAHNVGGGLMAPIALFGIYLTGSLSFGYLQGFEGAFIYPALLAIVIAIASYVLVRD
                     TPQSVGLPSIEAYRDDYPTQKKETFETELTTKEILFKYVLNNKWVWIIAIANIFVYFV
                     RYGVLDWAPLYLSEVKSFDMKESGWAYFLYEWAGIPGTLICGWLSDKVFKGRRGPAGF
                     IFMIGVTIAVVVYWLNPPGNPLIDNLALITIGFLIYGPVMLIGLQALDYVPKKAAGTA
                     AGLTGLFGYLGGAVMANIVMGAIVDHMGWSAGFILLTIISVLAMISFLFTWNKRGQEI
                     VH"
     gene            complement(5935..6459)
                     /locus_tag="PTC08_001401"
     CDS             complement(5935..6459)
                     /locus_tag="PTC08_001401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2529 domain-containing protein"
                     /protein_id="HDK5682913.1"
                     /translation="MSKMLTTQLTGIFNRLDQQELDIQMAAQSLIQAMGGEGHVYIKG
                     YGDLKCFESYILTSFEKLHSSLALDDYPSFDVLDTTDRVLLFGAEYSEEMARDLEQLI
                     ADDRDVVVITNKPKEVELPDHLMHFINLSTPRPIVYTEDYDKVVQPHLMALNYVYYEI
                     YTQMVEMMRDLDLE"
     gene            6724..7596
                     /locus_tag="PTC08_001402"
     CDS             6724..7596
                     /locus_tag="PTC08_001402"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-bisphosphate aldolase"
                     /protein_id="HDK5682914.1"
                     /translation="MPLVSMKEMLIDAKENGYAVGQYNLNNLEFTQAILQASQEENAP
                     VILGVSEGAARYMGGFYTVVKMVEGLLHDYEITIPVAIHLDHGSSFEKCKEAIDAGFT
                     SVMIDASHEPYEDNVKITKKVVEYAHERGVSVEAELGTVGGQEDDVVAEGVIYANPTE
                     CQNLVKATGIDALAPALGSVHGPYKGEPNLGFKEMEEIGASTGLPLVLHGGTGIPTHD
                     IKKAISFGTAKINVNTENQIASAKRVREVLDQDKEVYDPRKYLGPAREAIKETVIGKI
                     REFGTSGKAANIKG"
     gene            7941..9206
                     /locus_tag="PTC08_001403"
     CDS             7941..9206
                     /locus_tag="PTC08_001403"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HDK5682915.1"
                     /translation="MAQEVIKIRGGQTLKGSVEINGAKNSSVAIIPATLMAEAPVTLD
                     GLPQISDVETLVSLLEDLNIKTELNGTTLVVDPTHIENAPLPNNKVESLRASYYMMGA
                     MLGRFKKCVIGLPGGCPLGPRPIDQHIKGFKALGATVDESSLTSMKIEAERLVGANIY
                     LDIVSVGATINIMLAATRAEGQTIIENAAKEPEVVDVANFLNSMGAKVTGAGTSSIKI
                     VGVPHLHGSRHSIIPDRIEAGTYMCIAAACGESVHIDNIIPKHMEALTVKLKELGVTI
                     ETGDDYMIVQSSAPYKSVDIKTLVYPGFATDLQQPITPLLFLANGPSFVTETIYPERF
                     RHVKELQKMNGLITADQNTATVKPSKLTGTEVYASDLRAGACLIVAGLLAEGVTTIYN
                     VKHIYRGYTDIVKTLKALGADIWTEQVKA"
     gene            9254..9583
                     /locus_tag="PTC08_001404"
     CDS             9254..9583
                     /locus_tag="PTC08_001404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDK5682916.1"
                     /translation="MEVCPYLEETFKILGRSWNGLILHYLSTCDGYKAHFSEMKRHLR
                     PITNRALSMKVAELADAELLTKEVISTNPPSVCYHLTEKGVALARALEPLETWAHDYI
                     DLEEKAL"
     gene            9764..11197
                     /locus_tag="PTC08_001405"
     CDS             9764..11197
                     /locus_tag="PTC08_001405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HDK5682917.1"
                     /translation="MRDQTKQYINGEWVESHSGETIAVINPATEEVFGHIAKGNKADV
                     DQAVQAAHDVYLSFRNSSVKERQDLLDRIVKEYENRKDDLIEAMTLELGAPVTQSEKV
                     HYQMGLNHFKAARDALNDFQFEERRGDNLIVKEAIGVAGLVTPWNFPTNQTSLKLAAA
                     FAAGSPVVLKPSELTPYAAIILAEIFDKVGVPKGVFNLVNGDGEGVGTPLTQHPDVRM
                     VSFTGSGGTGSKIMEAASKDFKKVSLELGGKSPFIILDDANLEEAAKAAVKKVVNNTG
                     QVCTAGTRTLVPESIKDDFLKEVKKQMANVKVGDPQNTETQMGPIVSEKQYNQVQDYI
                     QKGIDEGAELLYGGTGKPDGLDKGYFAKPTIFTNVNNQMTIAQEEIFGPVMSIITYKD
                     LDEAIEIANDTKYGLAGYVFGQNKENLIRVARSIEAGTIEINEAGRASDLPFGGYKQS
                     GIGREWGDFGIEEFLEVKSIAGYYKGE"
     gene            complement(11288..11491)
                     /locus_tag="PTC08_001406"
     CDS             complement(11288..11491)
                     /locus_tag="PTC08_001406"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682918.1"
                     /translation="MIKSNHYQRKAVAVSSMHAFPMESQSSGQTYIICNNFGQVFEIQ
                     QDYSIIFIPFTHIFQQFLIINET"
BASE COUNT         3916 a         1972 c         2532 g         3500 t
ORIGIN      
        1 tggtcaaaac aatgacaaca aaaattaaac gctttgatga tattactata caattatatg
       61 ataagcaata ccgtgatgcg ttatatcaat tcgaattaaa tgagcgacaa cgtatctatt
      121 cttcattacc caaagaagtc ttggatgatg cattaaacga tgacaacaga gtcgcaaata
      181 tcgtactaaa tgatcaagat gaagtgattg gatttttcgt actgcatgaa cattatcaac
      241 acgagggcta tgacacaccg tatgaagtgg tgtacattcg ttcgttatcc attaatgaag
      301 cgtatcaagg gaatggctac ggcacgaaaa ttatgatgac attaccagaa tatgtgcaaa
      361 tgatttttcc ggattttaat catttgtact tagtcgtgga tgcagaaaat gaagcggctt
      421 ggaatgtgta tgagcgtgca ggttttatgc atacggcaac gaaagaagaa ggacacatcg
      481 gcaaagagcg tctctattac ctcgatttgg accataaata tgtatcctca ttaaaactta
      541 taaagggcga gggttcgaaa gcaggcccga ttgaaattgt taacttcatt ttagatggag
      601 aaaaagtagg atttttagcg attgaagcat ttaacgaacg gctgattatt cgtgcacttt
      661 acgttgatga tgcacataga gatacaggca ttgcgcaaaa tgcactgcgt caattggcga
      721 cctatgtacg taaagaaaat catgatacga aagtgattga agtcacattg tttggaccta
      781 atcatcaact gacaccgctg tttgttaaaa gtaattttgt ggagacattg acgacgaatg
      841 attatgtcac attagaaaaa tatattaatt attagtcggg tgattcgtca ttcatacatg
      901 taccaatccg caaaccattt catatggctt cgaaaaatct cgctgaaaac attgcgaaat
      961 catcagcagt gatttataat ttaattttgt taaagtcgat gtttaaatcg catctatcaa
     1021 gcaatagatg tgtatgaatg tagcgcaaca taatcaaaag gtgacggtca tacgcaccta
     1081 ttttttacaa attgaaatat ccgaatgaac agaaatgtta acctttgaaa ggaagatgtg
     1141 ctgatgaaat tacaagatta cacacaagaa atggttgatg aaaaatcatt tattgatatg
     1201 gcttatacgc ttttaagtga acaaaatgca acgatgaacc tttatgatat tattgatgag
     1261 tttaaacgta ttggtcatta cgaagatgca caaattgaag accgtatcgt tcaattctac
     1321 acagatttaa atacggatgg tcgtttttta agtgtaggtg ataacgtttg gggacttcgc
     1381 gattggtatt cagtagacga tattgaagaa aaaatcgcac caaccattca aaaattcgat
     1441 attcttgatg aagacgatga agaagataaa aacttaacat tattaggtga agatgattta
     1501 gatggcgatg acaacattcc aaatcgtact gatgatcaag aagatttaga tgatcctgaa
     1561 gatgaacgtg ttgaagatga aattgaagag tcagacctcg tagttgaaga agacgaagaa
     1621 gacatcgatg aaacatacga tgaagacgat gaacttgaag tagaggaaga agaagaaaca
     1681 ttttaatttc tgatttctaa ataaagtttg ttgacttttt acgacaacat gatagaattt
     1741 tattcgggct cctttaatta ggacggataa ataaatgaaa acgatagaaa gtagtgatgg
     1801 ctccgaaatg acgagtctca tctatcgtta aggttcccct tacaatcatg atattgtgag
     1861 tgggaacttt tttaatttta tgaaacattg cggacgttaa gtgattctaa gacgataaaa
     1921 gtggccgtat gttcattaat gcgaagtgtt ggccatacaa tcttcatcgc actgcaacga
     1981 cgacaacttt ttgaaattga gaatacagtc ttgcacataa tcaatgattg gcatacaaat
     2041 tcacccctac attttgaaag gtacttcaga caacaaacga ggaggaaatt gaattatgac
     2101 taaatttatt ttcgtaactg gtggcgtggt ttcatcatta ggtaaaggga ttacagccgc
     2161 ttcactagga cgcttattaa aggatagagg attaaaggtg acgatccaaa aatttgatcc
     2221 ttatttaaat gtggatccag gtacaatgag tccatatcaa cacggggaag ttttcgtgac
     2281 agatgatggt gctgaaacgg acttggactt aggtcattat gaacgtttta tcgacattaa
     2341 cttaaaccaa tactctaacg taacagctgg gaaagtgtac tcacacgtgc tacaaaaaga
     2401 gcgtcgtggt gactacttag gtgggacagt ccaagtcatt ccacatatta caaacgaaat
     2461 taagtcacgt ttgttactcg ctggtgaaag tacaaatgca gatgttgtca ttactgaaat
     2521 cggtgggaca acaggtgata tcgaatcgtt accatttatt gaagcgattc gccaaattaa
     2581 gagtgactta ggccgcgaca acgtgatgta tgtacactgt actttattac cgtacattaa
     2641 agcagcaggt gaaatgaaaa cgaaaccgac acaacatagt gtgaaagaat tacgtggttt
     2701 agggattcaa cctgatttaa tcgttgtgcg tacagaatat gaaatgacgc aagacttaaa
     2761 agacaaaatt gcattattct gtgacattga taaagaaagc gtcatcgaat gtcgtgatgc
     2821 agaatcactt tatgaaattc cgttacaatt aagccatcaa aacatggacg atattgtcat
     2881 cgaacgttta ggacttcaag tggatcgcga tacacaactc gatgaatgga atcatttatt
     2941 acgtgtcgtg aataacttag aaggcaaagt gacaattggt cttgtcggta aatatgtgtc
     3001 acttcaagat gcgtacttgt cagtggctga gtcacttaaa catgcgggtt accaatttat
     3061 gaaagatatc gaaattcgtt ggattgattc aagtgaggtt aatgatgaca acgctgcaga
     3121 atatttatca gatgtcgacg gcatccttgt tccaggtggt ttcggtttcc gtgcaagtga
     3181 aggtaaaatt tcagcgatta aatatgcacg tgaacaacag attccgttct tcggtatttg
     3241 tttagggatg caacttgcga cagtggaata tgcacgtcac gtcgttggtt tagaaggtgc
     3301 acattcagct gaattagatc cgaatacacc atacccagtg atcgatttat taccagaaca
     3361 aaaagatatc gaagacttag gcggtacatt acgtttaggt ttatacccat gtacaattca
     3421 agaaggcaca ttagctgaaa aaatttacgg aaaaacagaa gtggaagaac gtcatcgtca
     3481 tcgctatgag ttcaacaatg aatatagaga acaacttgaa gcagcaggta tgatcttctc
     3541 aggtacaagc ccagacggtc gtttagttga aatggtggag ttaaaagaac atccattctt
     3601 tatcgcatgc caattccacc cagagttttt atcaagaccg aaccgcccgc aaccgatctt
     3661 caaatcattc attgaagcgg cattgttaca acaaaataaa acgaaataat aaacattgca
     3721 gtcctatgga acttttcata gggctgtttt ttgattttat aggtgaaaaa tcattgttaa
     3781 aaccgcccct taaatgatga gcggtacatt agaaaataaa acgaatgatt tctcctgaaa
     3841 atgacaggct acattaacat tctcgctatc ttctgctaca tttaaaatga cgataatatt
     3901 taaggtgaaa tttaaaaaat ggcaatcgaa caagttgtgg aataagcaac actcatggca
     3961 agcaatttgt agcttaatga tgaaataacg cctatgcttt aaagtgcatc aagttaacgt
     4021 gactgaagta gaactcaatc ttataatgga aacccttaca aaaatgtaga aatgcgattg
     4081 acaaactttg tgacaatgca taaaatttac atgaaattaa tatttaatta ataatcaagg
     4141 ggaggataca tatgtttaag tttttaaaac cgcctgtagc tgcggcacct gtaccagaaa
     4201 gtcagcaaga tgaaacgtat aaaaaattaa ggctacaagt gtttatcggt atctttttag
     4261 gctatgcagg ttattatttg ttgcgtaaaa acttttcaat cgcgatgccg tacttagcgg
     4321 atatgggttt ttcaaaggca gaactcgggt ttgcgttatc cgcgatttcg attgcttacg
     4381 gttttagtaa gtttgtcatg gggacggtca gtgatagaag taacgcccgt atctttttaa
     4441 cgttaggact tgtgttaaca gctatcgtca atttactgat gggcttcatt cctgcgttaa
     4501 catcaagtgt cacgatcatg ttcatcatgt tattcctcaa tggttggttc caaggtatgg
     4561 gctggccgcc gtcaggtcgt gtgctcgtgc attggtttag tgtgagtgaa cgtggaagta
     4621 aaacggcgat ttggaacgtc gcgcataacg tcggtggtgg tttaatggca ccaatcgcat
     4681 tgtttgggat ttatttaaca ggttcattga gctttggtta tttacaaggc tttgaagggg
     4741 catttattta tcctgcgtta cttgcgattg tcattgcgat tgcgtcatac gttttagtgc
     4801 gtgatacacc gcaatcagtc ggtttaccat caatcgaagc gtatcgtgat gattatccaa
     4861 cacaaaagaa agagacattc gaaacagaat tgacgacgaa agagatttta ttcaaatacg
     4921 tccttaacaa caaatgggtg tggattattg cgattgcgaa tattttcgtc tactttgtcc
     4981 gatatggtgt gttagactgg gcgccgctct atttaagtga agtgaaaagc tttgatatga
     5041 aagaatcagg ctgggcctat ttcttatacg aatgggcagg tattccaggt acacttatct
     5101 gtggttggtt atcagataaa gtatttaaag gtcgtcgtgg tccagcaggc tttatcttta
     5161 tgattggtgt aacgattgcg gttgtcgtat actggctcaa cccacctggc aatccactca
     5221 ttgacaacct tgcattaatt acaattggct ttttaatata tggtccagta atgttgattg
     5281 gtttacaagc attggattat gtgccgaaaa aagcagcggg gactgcagcc ggtttaacag
     5341 gtttattcgg ttacctcggt ggcgctgtca tggcgaacat tgtcatgggt gcgattgtag
     5401 atcatatggg ttggagtgca ggcttcatct tattaacaat cattagtgtc ttagcaatga
     5461 ttagcttcct cttcacgtgg aataaacgtg gacaagaaat cgtacattag aatagatgag
     5521 aggcaagtat cttttaattc aaaagaggta cttgtctttt tagtatgtta ttatcaaatt
     5581 atatttttat atatttaaga taagtgataa aacgtgtgga aagtggaggt gtatcacaat
     5641 gcaattttgg cttaaattca tttgttttat cattgcatct attttaatcg ctcactttat
     5701 ttggaacgaa atgaggattg cgtctcttat tatcagtatc atcactttaa tcgctttttc
     5761 tatcattgag tatgtgttca aaaagaaaga gaaggaatag aattgcggtc ttacttgata
     5821 tagaagttac acactggaaa ggtcatcaat aagtagagac gttttcagtg tgtaaaattg
     5881 gactgtgagt agggagaggg acatttagtt ttcccagtcc ctatcttatg aatactattc
     5941 caaatctaaa tcacgcatca tttcaaccat ttgcgtataa atttcataat acacataatt
     6001 caacgccatg agatgcggtt gtacgacttt atcataatct tctgtgtaaa caatcggtct
     6061 cggtgtcgac aaattaataa aatgcattaa atgatccggt aattcaactt ctttaggttt
     6121 attcgtaatc acgacaacat cgcgatcatc cgcaattaat tgttccaaat cacgagccat
     6181 ctcctcgcta tactccgctc cgaacagtaa cactctatct gtcgtgtcta acacgtcaaa
     6241 cgagggataa tcgtctagcg ccaaacttga atgcaatttc tcaaaactcg ttaagatgta
     6301 ggattcaaag cattttaaat caccataacc tttaatgtaa acatgacctt cgccacccat
     6361 cgcttgaatt aaactttgtg cagccatttg aatatccaac tcttgctgat cgagtcgatt
     6421 aaatatacct gttaattgtg ttgtgagcat ttttgacatg catgttgcct cctttttggt
     6481 caattttttg tatatatata aaattaaatt tttggttttt taacagctgt taatgctacg
     6541 aaattcaaaa ttcattttat aaaataatcg tgttagaatc aattcacagc aatggttgcg
     6601 cttacatgat aaattacgat atttttcaca aatttagtgc gattttgcgg tgcatattaa
     6661 caatgacttt gctatactgt atttataaat attcgtgcga catgcacgca aggaggaact
     6721 ttcatgcctt tagtttcaat gaaagaaatg ttaatcgacg caaaagaaaa tggttatgct
     6781 gtaggtcaat ataacctaaa taacttggag ttcacacaag cgattttaca agcgtctcaa
     6841 gaagagaatg cgcctgtaat tcttggtgta tctgaaggag cagcaagata catgggtggc
     6901 ttctacactg tagttaaaat ggtagaggga ctattacacg actacgaaat cacaattcct
     6961 gttgcgattc atttagacca tggttcaagc tttgaaaaat gtaaagaagc gattgatgct
     7021 ggtttcacat ctgttatgat tgatgcatca cacgagccat atgaagataa cgtgaaaatt
     7081 acgaaaaagg ttgtagaata cgcgcacgaa cgcggtgtat ctgttgaggc tgaattaggc
     7141 actgttggtg gtcaagaaga tgacgttgtt gctgaaggcg ttatctacgc taacccaact
     7201 gaatgtcaaa acttagttaa agctacaggt atcgatgcat tagcgcctgc tttaggttca
     7261 gttcacggac catacaaagg tgaaccaaac ttaggtttta aagaaatgga agaaatcggt
     7321 gcttcaactg gattgccatt agtattacac ggtggtacag gcatccctac tcacgacatt
     7381 aaaaaagcga tttcattcgg aacggctaaa atcaatgtta atactgagaa ccaaattgct
     7441 tcagctaaac gtgttcgtga agtattggat caagacaaag aagtttacga tccacgtaaa
     7501 tatttaggac cagctcgtga agcgattaaa gaaactgtaa ttggaaaaat tagagagttc
     7561 ggtacttcag gtaaagcagc aaacattaaa ggttaatcta ttttaagaga tgtcacacac
     7621 gtatcacatg tttgtgcagt gtcaacatca ttaaattcaa aagagagtag catgatcaca
     7681 agttgtgagt cggttactct ctttttcata ttttgataat cgtgatgacg ctctatagtg
     7741 aaaacgtgta ggaaacgctt gatgcaaagg taggcaaagt cgttcaatcg ctatcatatt
     7801 tacaaaaatt gaacgcaaag tagggctaaa catctcaaag cgtcgttttt tcattttgca
     7861 atttgaaaaa atttacttta taatgctttt aatatagtat tataaggtta aaatgaacaa
     7921 gggaaaagga gttcaatgac atggcacaag aagtgataaa aataagaggt ggccaaactt
     7981 taaaagggag tgttgaaatt aatggtgcga aaaacagttc agttgccata atacctgcaa
     8041 cattaatggc agaagcaccg gtaacgttag atggcttgcc acaaatttct gatgttgaaa
     8101 cgctggttag cttattggaa gatttaaaca ttaagactga acttaacggc acaactttag
     8161 tagtagaccc gacacatatt gaaaacgccc ctttgccaaa caataaagtt gaatctttgc
     8221 gtgcttctta ttatatgatg ggggctatgc tcggtcgctt taaaaagtgc gtcattggtt
     8281 tacctggagg atgtccgctt gggccgagac cgattgatca acatattaaa gggtttaagg
     8341 ctttaggtgc aacagtagat gagtcgagcc tcacatcaat gaaaattgag gcagaacgtt
     8401 tggtaggcgc gaacatttat ttagatattg tcagtgtagg tgcaacgatt aatattatgc
     8461 ttgctgcgac acgtgcggaa gggcaaacga ttatcgaaaa tgcagcaaaa gaacctgaag
     8521 tggtcgatgt tgccaacttt ttaaatagta tgggcgcaaa ggtcacaggt gcagggacaa
     8581 gttcgattaa aattgtcggt gtgcctcatt tacatggtag ccgccactca atcataccgg
     8641 atcgtatcga agctggaacg tacatgtgta ttgcggccgc ttgtggtgag tcggtacata
     8701 ttgacaacat tattccaaaa catatggaag cactcactgt gaaattgaaa gagttaggtg
     8761 ttacaataga gacaggcgat gactacatga tagtccaatc ttctgcacct tataaaagtg
     8821 tcgatatcaa aacgcttgtg taccccggtt ttgcaacgga tttacagcaa cctattacac
     8881 ctttactctt cttagcaaat ggacctagtt ttgtcactga aacgatttat ccagagcgct
     8941 tcagacatgt gaaagagtta caaaaaatga atggattgat aacagcagac caaaatactg
     9001 cgacagtgaa gccatcgaaa ttaacaggca ccgaagtgta cgcaagtgac ttacgtgcag
     9061 gtgcatgctt aatcgtagct ggattgttag cagaaggtgt gacaacgatt tataatgtga
     9121 agcatatcta ccgaggttat acagatattg tgaaaacact taaagcgtta ggtgctgata
     9181 tttggacgga acaagttaaa gcttaatccg attaatgttg ttatcacaaa tttaaaattg
     9241 agaggtgata actatggaag tatgtccata tttagaagaa acatttaaaa ttttaggacg
     9301 cagttggaac ggtttgattt tgcattacct ttcgacttgc gatggatata aagcgcattt
     9361 ctcagagatg aaaagacatt tacgtccaat tactaataga gccttgtcta tgaaagtggc
     9421 tgagttggct gatgcagagt tattaacgaa agaagttatt tcgacaaatc cgccgtcagt
     9481 ttgttaccat ttaacagaaa aaggtgtagc attggcacgt gcattagaac cgctcgaaac
     9541 ttgggcgcat gactatattg atttagaaga aaaagcgcta taagcattca aagaaaataa
     9601 taaaagagta agacgacgcg aacgattggt gtatgtgctt actcttttat tgtttatcaa
     9661 gttaatgtaa tgacagaaaa aatttgattt gtagggtcag gtttaaaaag gaataaactt
     9721 ggcaatacaa agtgtatgac attaaatgaa ggagtgtttg ttcatgagag atcaaacaaa
     9781 acaatatatt aatggtgaat gggttgaaag tcatagtggt gaaacgatag cagtcattaa
     9841 cccagccaca gaagaagtat ttggtcatat cgcaaaaggg aataaagcag atgtagacca
     9901 agcagttcaa gctgctcatg acgtgtatct ttcatttcgt aactcgtctg tcaaagaacg
     9961 acaagacttg ttagatcgta ttgttaaaga atatgaaaat cgtaaagatg atttaataga
    10021 agcaatgaca ttagagctag gtgcacctgt gacacaatca gaaaaagtgc attatcaaat
    10081 gggcttaaac cattttaaag ctgcacgtga cgcattgaat gatttccaat ttgaagaacg
    10141 tcgcggagat aacttaatcg tgaaagaagc aattggtgtt gcaggacttg tcacaccttg
    10201 gaacttccca acgaaccaaa catcacttaa attagcggca gcatttgcgg caggaagtcc
    10261 ggttgtcctc aaaccatctg aattgacgcc atatgcagcg attattttag ctgaaatttt
    10321 cgataaagtt ggtgtaccca aaggtgtatt taaccttgtc aatggcgatg gtgaaggtgt
    10381 cggtacaccg ttaactcaac atcctgatgt ccgcatggtg tcatttacag gttctggtgg
    10441 cacaggttca aaaattatgg aagcggcgag caaagacttc aaaaaagtat cattggaact
    10501 cggcgggaaa tctccattta tcattttaga tgatgcgaat cttgaagaag cggctaaagc
    10561 ggcagtgaag aaagttgtta acaatacagg gcaagtatgt acagcaggca cacgtacatt
    10621 agtgccggaa agtattaaag acgattttct taaagaagta aaaaaacaaa tggcgaacgt
    10681 gaaagtcggc gatccacaaa atactgaaac acaaatgggt cctattgtga gtgaaaaaca
    10741 atacaatcaa gtacaagact acattcaaaa aggcatcgat gaaggcgctg aactattata
    10801 cgggggtaca ggtaaaccgg atggtctaga taaagggtat ttcgcgaaac ctacaatctt
    10861 tacaaatgtg aataatcaaa tgacaatcgc gcaagaagaa atttttggac ctgttatgtc
    10921 aattattacg tataaagatt tagacgaagc gattgaaatt gctaacgata caaaatacgg
    10981 acttgccggc tatgttttcg gtcaaaacaa agaaaacctt atccgtgttg cacgttctat
    11041 tgaagcaggt actatcgaaa ttaacgaagc tggacgtgcg tcagacttac cattcggtgg
    11101 ttataaacaa tcaggtattg gccgtgaatg gggcgacttc ggtattgaag aatttttaga
    11161 agtgaaatct attgcaggtt attacaaagg tgaataactg tttgaaatag tgtgtgaaaa
    11221 catgcgcatc aaaagaaagc gaagaggctg ggaattaagt tttcccagcc ttaatgtttt
    11281 catagattta tgtttcatta atgattaaaa attgttggaa aatgtgagtg aacgggataa
    11341 aaatgatact atagtcttgt tggatttcaa aaacttgtcc aaagttgttg catatgatgt
    11401 aagtttgccc agaagattga gactccatag ggaatgcatg catactgctg acagcgaccg
    11461 cttttctttg atagtggtta ctctttatca tagtggctgt ctggcttcta aatgtataca
    11521 cttttgagaa gccgaatcag ccttgcggag gtagcacgac gaaatctgtg ttgtagatga
    11581 gatttctgta ctgctcccaa aatgcactaa cgcctcaacg aatgaaatag tttaatcaag
    11641 cgttagtgag ttgaaaaatc agcccctagg aaaggtcatc catgaaggca atcaaaaaca
    11701 caaatcattg tagtagggcg agttcaacaa gaatattgta tcaatagcat caaaatcttt
    11761 tgtctcccag tccttttttt aattatttta aagaaaattt gagtattgaa ataaagtcaa
    11821 aaatggctaa attgagtggg aaaattagga tttctttatt ttatggacaa gccaattttc
    11881 tatgattttc tgaacttata aaaatgagta aaattgatga
//
LOCUS       DANHOL010000071        11815 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.071, whole genome shotgun sequence.
ACCESSION   DANHOL010000071 DANHOL010000000
VERSION     DANHOL010000071.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 11815)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11815)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11815
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.071"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            4..573
                     /gene="ahpC"
                     /locus_tag="PTC08_001407"
     CDS             4..573
                     /gene="ahpC"
                     /locus_tag="PTC08_001407"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002445177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HDK5682919.1"
                     /translation="MSLIGKQIEEFSAQAYNAKTDEFIEVTHEDLKGNWNVVVFYPAD
                     FSFVCPTELEDVQNHYEKLQELGTNVFSVSTDTHFVHKAWHDHSDAISKLQYTMIGDP
                     SQAITRQFDVLDETSGLAQRGTFIIDPDGVVQAAEINADGIGRDASTLVHKIKAAQYV
                     RQNPGEVCPAKWEEGSETLTPGLDLVGKI"
     gene            588..2111
                     /gene="ahpF"
                     /locus_tag="PTC08_001408"
     CDS             588..2111
                     /gene="ahpF"
                     /locus_tag="PTC08_001408"
                     /EC_number="1.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkyl hydroperoxide reductase subunit F"
                     /protein_id="HDK5682920.1"
                     /translation="MLNQELKQQLSQLLDLMEGDVVLKVSTGDDDHSQKMNDLVNEVS
                     DMSSRITVEKAELKRTPSFSINRPNEDTGITFAGVPLGHEFNSFVLALLQVSGRAPKE
                     EQSVIDQIKSIDEPLHFETFISLTCQKCPDVVQALNLMSVINPNITHTMIDGAVFKKE
                     ADDIMAVPAIFLNGEQFGNGRMTVTDILSELGQGPDASEFENKETFDVLVVGGGPASA
                     SSAIYAARKGLKTGIVADRIGGQVNDTADIENLIGVKKTTGPSLATSLEEHIKDYNVD
                     IMTGVRAEGLEKTDDIVHLTLDNGAVLKTRSLIIATGARWKKIGVPGEDTFANKGVAY
                     CPHCDGPLFEGKDVAVIGGGNSGVEAAIDLAGICKSVTVLEYGESLKADSVLQERLNS
                     LPNTTVITHAATQEIKGDDRVSGIAYTCNETNQEKHVDLNGVFVQIGLSPNTEWLGDT
                     VQRNRMGEIEVDRLGNTNIPGVFAAGDCTDQRYKQIIISMGSGATAALSAFDYLIRN"
     gene            complement(2658..3599)
                     /locus_tag="PTC08_001409"
     CDS             complement(2658..3599)
                     /locus_tag="PTC08_001409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1002 domain-containing protein"
                     /protein_id="HDK5682921.1"
                     /translation="MYKKLFISGVVTSMLMVGVAQAANEFKPKEEIFIQGADLNNNQL
                     VETKEKLGVGNNVTTYKVTNTDIIEYTGTEYDFIHSSALIKPKRFTSGVDVEIETPEN
                     ITRITREQYMNAAITSGIQDATIKIASVDQVTGEGALTGIYKAYATQGHRLNAQDIQN
                     ANQEMNHLARISENHQNKDGYSDEALNEAVAEMKAQIAEAKASHQQLNSTTINQIVNQ
                     TLTERGLYQILSDHEIAVIQNIMVNVAESNVVNQDPDAFKKQATELKEMIQSQAGDKL
                     KKLKDLDNEETRNFLQKLWDAIVSIFTKIWNWLISFL"
     gene            complement(3717..4706)
                     /gene="bioB"
                     /locus_tag="PTC08_001410"
     CDS             complement(3717..4706)
                     /gene="bioB"
                     /locus_tag="PTC08_001410"
                     /EC_number="2.8.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin synthase BioB"
                     /protein_id="HDK5682922.1"
                     /translation="MKIAKQILEGRALTPDEALDLLVNPSYDTMDLVHEAYQLRKHYY
                     GHKVKLNMILNAKSGICPEDCGYCGQSREMKQKQRYALISEDEITEGARVAVENEIGT
                     YCIVMSGRGPSDKEIDHITSSVERIKAAHPQLKVCACLGLTNETQAEKLKAAGVDRYN
                     HNLNTSENYHHEVVSTHTYEDRVNTIEMMKRNNISPCSGVICGMGESNQDIVDMAFAL
                     KEIDADSIPVNFLHPIKGTKFGEMDQLTPTRCLRILALFRLINPTKEIRIAGGREVNL
                     RSLQATALMVANSIFVGDYLITGGQPNQLDYDMIQDMGYDIDYGTSHESELFV"
     gene            4912..5289
                     /locus_tag="PTC08_001411"
     CDS             4912..5289
                     /locus_tag="PTC08_001411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1801 domain-containing protein"
                     /protein_id="HDK5682923.1"
                     /translation="MDTLDEFLETIDKPEHREKLATVIQTILDRYPELTLEIKWNQPM
                     LLYKKNGTFILGFSKAKPHFAVAPEKHTLDTFAKEIEKTGYQMTKMFMKIKWTDEVNY
                     TLLYDIIDFNIHDKKDSRFFWRQ"
     gene            5605..6630
                     /locus_tag="PTC08_001412"
     CDS             5605..6630
                     /locus_tag="PTC08_001412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HDK5682924.1"
                     /translation="MIEFKNVNKIFKQGRHSVHALKDISFSIQAGDVFGVIGYSGAGK
                     STLVRLINQLEQQTSGDVYVDGHHLNTYAPAQLRAVKKDIGMIFQQFNLLDSKTVFKN
                     VAMPLILRKVPMDEIKSRVEEMLHFVGLSGKANNFPNELSGGQKQRVAIARALVTRPK
                     ILLCDEATSALDPATTDSILQLLKKTNETLGVTIIVITHEMSVIQSICNRVAIMENGV
                     VIELDTVKQVFSHPKTTTAQRFVSTVINTSPSQQVMDNLQIDERHQIYRLFIESTQIT
                     QTLINDLIQKTAVNVNIVHATMADIQEETVGYLWLLIKGDAAQQQQVTSYFEHHQIQY
                     EKGVPTC"
     gene            6624..7283
                     /locus_tag="PTC08_001413"
     CDS             6624..7283
                     /locus_tag="PTC08_001413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDK5682925.1"
                     /translation="MLGSSIDSAQLLEALYQTLYMVTISLIFGALIGVPLGIVLVATR
                     QNGIWPNAWIHHILNPVINILRSVPFIILLIAIIPFTKLIVGTSIGTTAAIVPLTVYV
                     APYIARLVENSLLEVDEGIIEAAHAMGATPIQIIRYFLLPEALGSLILSLTTAIIGLI
                     GATAMAGAVGGGGIGDMALVYGYQRFDTLVIIITVVVLVIIVQCIQSIGNALAKKVRR
                     H"
     gene            7299..8138
                     /gene="gmpC"
                     /locus_tag="PTC08_001414"
     CDS             7299..8138
                     /gene="gmpC"
                     /locus_tag="PTC08_001414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016425688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide ABC transporter
                     glycylmethionine-binding lipoprotein"
                     /protein_id="HDK5682926.1"
                     /translation="MKKLITFLVLAVFVLSACGNNKSEKVTLGVASNDTKAWEKVKEL
                     AKKEDIDLEIKQFSDYNVPNTALNDGDIDMNAFQHFAFLEAFKKANKGTEITPIRTTV
                     LAPLGIYSEKIKDIKDVKDGAKVVIPNDVSNQARALKLLEKAGLLELNKDFGLSSSIK
                     DIKNNPKNLDIKAVDAQQTARALSDVDISVINNGVATKAGLDAKKDPIYLEASDSDAV
                     KPYINIIAVNSKDKDNKVYKRIAELYHSEEAKAALKEDTKDGELIIDLKQDEIKAIED
                     SLK"
     gene            8304..8495
                     /locus_tag="PTC08_001415"
                     /pseudo
     CDS             8304..8495
                     /locus_tag="PTC08_001415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001095317.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
     gene            8893..9024
                     /locus_tag="PTC08_001416"
     CDS             8893..9024
                     /locus_tag="PTC08_001416"
                     /inference="COORDINATES: protein motif:HMM:NF025126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682927.1"
                     /translation="MYQKRRIDVEPTFGNLKANLGFQRLSVPIQLKGQCELGIALWQ"
     gene            complement(9166..9243)
                     /locus_tag="PTC08_001417"
                     /pseudo
     CDS             complement(9166..9243)
                     /locus_tag="PTC08_001417"
                     /inference="COORDINATES: protein motif:HMM:NF012948.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(9235..9297)
                     /locus_tag="PTC08_001418"
                     /pseudo
     CDS             complement(9235..9297)
                     /locus_tag="PTC08_001418"
                     /inference="COORDINATES: protein motif:HMM:NF012948.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         3437 a         2779 c         2313 g         3286 t
ORIGIN      
        1 attatgtcat taatcggtaa acaaattgag gaattttcag cacaagcata caatgcaaaa
       61 acagatgaat ttattgaagt tacacacgaa gatttaaaag gtaactggaa tgttgtcgta
      121 ttctaccctg cagatttctc attcgtatgt ccaactgaat tagaagatgt acaaaatcat
      181 tacgaaaaat tacaagagtt aggtacaaac gtattctctg tttctacaga tactcacttt
      241 gtacataaag catggcacga tcattcagat gccatcagca aattacaata tacaatgatt
      301 ggtgatcctt ctcaagcgat tacacgtcaa ttcgatgtat tagatgaaac gtcaggtctt
      361 gcacaacgtg gtactttcat tattgaccca gacggtgttg ttcaagcagc agaaatcaat
      421 gcagacggta tcggccgtga cgcaagcaca ctcgtacaca aaattaaagc agcacaatat
      481 gttcgtcaaa atccaggtga agtttgccca gcgaaatggg aagaaggtag cgaaacttta
      541 actccaggat tagatttagt aggtaaaatt taaggaggct atactgaatg ttaaatcaag
      601 aattaaagca acaactttca caacttcttg atttgatgga aggtgacgtt gttctgaaag
      661 tgagcactgg cgatgacgat cattctcaaa aaatgaacga tctcgttaat gaagtttcag
      721 acatgtcatc tcgaattaca gtagaaaaag ctgaattaaa gcgtacacct agctttagta
      781 tcaacagacc aaacgaggac actggcatta catttgctgg tgtccctctt ggtcatgagt
      841 tcaattcttt tgtcctagca ctcttacaag tgagtggtcg tgcaccaaaa gaagagcaat
      901 ctgtaattga tcaaatcaag tctattgatg aaccccttca ctttgaaaca ttcattagct
      961 taacatgtca aaaatgtcct gatgtcgttc aagcattaaa cttaatgagt gtcatcaatc
     1021 cgaatataac acatacaatg attgatggtg ccgttttcaa aaaagaagca gatgacatta
     1081 tggcggtacc tgcaattttc ttaaatggtg aacaattcgg taacggccgt atgacagtga
     1141 cagacattct tagtgagtta ggtcaaggtc ctgacgcttc tgaatttgaa aataaagaaa
     1201 catttgacgt cctcgtagtc ggcggcggtc ctgcaagtgc aagctctgcc atctatgctg
     1261 cgcgtaaagg tttaaaaaca ggtatcgtag cagacagaat tggtggtcaa gttaatgaca
     1321 cagctgatat tgaaaactta attggcgtga agaaaacgac aggtccatca cttgcgacaa
     1381 gtcttgaaga acacattaaa gactacaatg tggatattat gaccggcgta cgtgcagaag
     1441 gattagaaaa aacagatgat atcgttcatt tgactttaga taatggcgca gtgcttaaaa
     1501 cgcgctcact cattatcgca acaggtgcac gttggaagaa aatcggtgta ccgggtgaag
     1561 acacattcgc aaacaaaggt gttgcatact gcccgcactg tgacggacct ctatttgaag
     1621 gtaaagacgt cgctgttatc ggtggcggta actctggtgt tgaagccgcg attgacttag
     1681 caggtatttg taaaagtgtg acagtccttg aatatggtga gtcattaaaa gcagactctg
     1741 tattacaaga gcgtttaaat tcattaccga atacaacagt catcacacat gcagcaacac
     1801 aagaaatcaa aggtgacgac cgcgtgagtg gtattgcata cacttgtaac gaaacaaatc
     1861 aagaaaaaca tgttgattta aatggtgtct tcgttcaaat cggtctttct cctaatactg
     1921 aatggttagg cgatactgtt caacgtaacc gcatgggtga aattgaagtc gaccgtttag
     1981 gaaacacgaa cattcctggt gtctttgcgg caggcgactg tacagaccaa cgctataaac
     2041 aaatcattat ttctatgggg tcaggcgcaa cagcagcatt atctgcattc gactacttga
     2101 ttcgtaacta aataggattc atatcattaa tcggactggt gagaaagggt tgtcttttca
     2161 tcagtccgat tttctatttt atgcacgtaa aggcaacaca gctttttcat ccatcgaagt
     2221 aagcaagcga gagccttttg agtgcaatca ctacaatcga cctaggctaa ttcagtaaac
     2281 aaaagataag atgggacaca aaaattgagt ttatccccat cctcaagtga aaggttgatt
     2341 gttttgaaat actgtaattg gcattccact ttcttaaaac acgacaccca tttgaagttt
     2401 agagacaagc gtaagattgc tagaacggtg cgtacttata aaaatcaagt ccttattgat
     2461 tgcaaatctg ggcgagactc ctgagggatc agctgaaccg gcaaatccac taacgcttcc
     2521 accaatgtaa cagttcaatc aagcgttagt tagttaaagg tttagcccct aggaaaggga
     2581 gccctttgag tgcaatcaaa aaggacaaac accttaaaaa tgaaatatta tgcttgtaat
     2641 ctgaatgaat tgcaatccta caaaaacgaa atcaaccagt tccaaatttt agtaaaaatg
     2701 ctgacaatgg catcccacaa tttttgcaag aaattacgcg tttcctcatt atctaaatcc
     2761 ttcaacttct tcagtttgtc gccggcttgg ctttgaatca tttcttttaa ctcagtcgcc
     2821 tgttttttaa acgcatccgg atcttggttg actacattgg attccgcgac gttcaccatg
     2881 atattttgaa tgaccgcaat ttcgtgatca cttaaaatct gatacagtcc gcgctctgtt
     2941 aatgtttggt tgacaatttg attgattgtt gtactgttca gttgttgatg tgacgctttt
     3001 gcttcagcga tttgagcttt catttctgca actgcttcat tcaacgcttc atcagaatag
     3061 ccatctttat tttgatgatt ttcactaatt cgtgctaaat gattcatttc ttggttcgca
     3121 ttttgaatat cttgcgcatt taaacgatga ccttgtgtgg cataggcttt ataaatgcct
     3181 gtcaatgcac cttcgccagt cacttgatcg acagaagcaa ttttaatcgt cgcatcttga
     3241 atacctgatg taatcgctgc attcatatac tgttctcgtg taatacgtgt aatattttca
     3301 ggggtttcaa tttctacatc gacaccactc gtaaagcgtt tcggtttaat caaagcacta
     3361 gaatggataa agtcgtattc tgtccctgta tattcaatga tatccgtatt tgttacttta
     3421 tacgtcgtca cattgttgcc gactcccaac ttttctttcg tctcaacaag ttggttgtta
     3481 ttcaaatcgg caccttggat aaatatttct tcttttggct taaattcatt tgcggcttga
     3541 gcaacgccta ccattaacat cgatgtgacc acgccactga tgaatagctt tttatacatt
     3601 ttcgtcactt cctcctagtg ctacgctatt ttctctattt taccatgaat gttcaacaat
     3661 actatcattc ctcggaccta agcgtaaaag taccatgcgc gctaagaaag atgtggctaa
     3721 acgaacaatt ctgattcatg agaagtgcca taatcaatgt cgtatcccat atcttgaatc
     3781 atgtcatagt ctaattgatt cggctgtcca cctgtaatta aataatcgcc tacaaaaatt
     3841 gaattcgcga ccattaacgc tgtcgcttgt agtgaacgta aattaacttc tcttccccct
     3901 gcaatacgaa tttcttttgt cggattgatt aagcgaaaaa gcgccaaaat gcgtaaacaa
     3961 cgggtcggtg tcagttgatc catctcacca aatttcgtac ctttaatcgg atgtaaaaag
     4021 ttcactggaa tactgtccgc atcgatttct ttcaatgcaa aagccatgtc cacaatgtct
     4081 tgatttgact cacccatacc acaaatgact cccgagcatg gtgaaatatt gtttcgcttc
     4141 atcatctcaa tagtattcac acggtcttca tatgtatgtg ttgagaccac ttcatgatga
     4201 taattttcac tcgtattcaa attgtgatta taacgatcga cccctgctgc ttttaatttc
     4261 tctgcttgcg tctcattcgt caaacctagg catgcacata ctttcaactg tggatgtgcc
     4321 gctttgatac gttcaacaga cgacgtaata tggtcaattt ccttatcact cggaccgcga
     4381 ccgctcatca caatacaata cgttccaatt tcattctcaa ctgcgacgcg tgcaccttct
     4441 gtaatttcat cctctgagat taacgcgtaa cgttgctttt gcttcatttc acgtgattga
     4501 ccacaatagc cacaatcttc aggacaaata ccacttttcg catttaaaat catatttaac
     4561 ttcactttat gtccataata atgtttacga agttggtacg cttcatgaac aagatccatc
     4621 gtgtcatagg acggatttac caacaaatct aatgcttcat ctggagtcaa tgcacgacct
     4681 tctaatattt gtttcgctat tttcatagtc attcctcctc atatagaagt cagtatatca
     4741 caattgtaac catttttata ataaagttta caatctatat agcggttcat gttgacccaa
     4801 attagggtat attgaagttg tcacattaaa ttaaaatgtc gcttataata aagttagaag
     4861 catcagattt aagacagacc gcagtctaaa aacagatatg gaggcaacaa aatggataca
     4921 ttagatgaat ttttggaaac catcgacaaa ccagagcatc gtgagaaact agcaacagtg
     4981 atacaaacca tactcgatcg ttatcctgaa cttactttgg aaatcaaatg gaatcaaccg
     5041 atgttattgt acaaaaaaaa tggcactttt attttaggat tcagtaaagc gaaaccccac
     5101 tttgctgtcg caccagaaaa acatacatta gatacttttg cgaaagagat cgaaaaaacg
     5161 ggttatcaaa tgactaaaat gtttatgaag atcaagtgga cagatgaagt caattatacg
     5221 ttgctatatg atatcattga ttttaatatt catgataaaa aagactcacg cttcttctgg
     5281 agacagtagt ttctttgccg cttaccataa aggtgactcg gcttctcaaa aatactcaat
     5341 gttgaggagt cagacagcac cttcgcccta ccaccatgcc ctttaatttt gttatgcgcg
     5401 cccttgcccc atcctttcca tttctcactc aaccccttaa aaaacatcca ttttccatat
     5461 atacatatgc tgcaatacgc ctttaataac aaataattgc gatttttctg aaaataccca
     5521 aaattatgtt gacttgaata tgaagttctt ctacaataca taacatatcg cttagttgtg
     5581 aagtcggaat tctaggaggt ctgtatgatt gagtttaaaa atgtgaataa aatatttaag
     5641 caagggagac attcggttca cgcccttaaa gacatttctt tctccattca agctggtgat
     5701 gtttttggtg tcattggtta tagtggtgcg ggcaaaagta cactcgttcg cctgatcaat
     5761 caattagaac aacaaacttc tggtgacgtt tatgtcgatg gccatcattt aaatacatat
     5821 gctcctgcac agttaagagc tgtcaaaaaa gatatcggga tgattttcca acaattcaat
     5881 ctattggatt ctaaaactgt ctttaaaaat gtcgccatgc ctctcatatt acgtaaagta
     5941 cccatggatg aaattaagtc tcgcgtcgaa gaaatgcttc attttgtagg attatctggt
     6001 aaagcgaaca actttcctaa tgaactgtct ggcggtcaaa aacaacgtgt ggcaattgca
     6061 cgcgcactcg tgacacgtcc taaaattttg ctctgtgacg aagcaaccag tgcactcgat
     6121 ccagcgacga cagattcgat tcttcaatta ttaaagaaga cgaacgaaac tttgggtgtc
     6181 acgattattg tcattacaca tgaaatgagt gtgattcaaa gcatttgtaa ccgtgtcgcc
     6241 attatggaaa atggtgtcgt cattgagttg gatacggtga aacaagtgtt cagtcatcct
     6301 aaaactacaa ctgctcaacg tttcgtatcc actgtcatta atacctcacc ttctcaacaa
     6361 gtgatggaca accttcaaat tgatgaacga caccaaatct atcgcctatt tatcgaatcg
     6421 actcaaatta cacaaacact cattaacgac ttgattcaaa aaacggcagt aaatgtgaat
     6481 atcgtacatg caacgatggc tgacattcaa gaggagacag taggctattt atggttactt
     6541 atcaagggag acgcggcgca acaacaacag gtcacgtctt atttcgaaca tcatcaaatc
     6601 caatatgaga aaggggtgcc gacatgctag gttcatctat tgatagtgca caattactag
     6661 aagcactgta tcaaacatta tacatggtga ccatttcact catttttggt gctttaattg
     6721 gcgttccact tggcattgta ttagtggcga cccgtcaaaa tggtatatgg ccaaacgctt
     6781 ggattcatca cattttaaac ccagtgatta acattttgcg ctctgtgcca ttcattattt
     6841 tacttatcgc aatcattcca tttactaaat tgattgtagg gacatctatt ggcacaacgg
     6901 cagctattgt accattgact gtttatgtag ccccttatat tgctagactt gttgaaaact
     6961 cacttttaga ggtagacgag ggcattatag aagccgcaca tgcgatgggt gccacaccga
     7021 tacagatcat tcgttacttt ctattacctg aagcactcgg ttcacttatt ttatccctca
     7081 ctacggcgat tattgggctc atcggcgcaa ctgcaatggc tggtgctgtc ggtggtggcg
     7141 gcattgggga tatggcactt gtttatggtt accaacgttt cgatacactt gtgattataa
     7201 ttactgttgt cgttttagtg attatcgtgc aatgcattca atctattggg aatgcactcg
     7261 ctaaaaaagt tcgacgacat taactggagg atatatttat gaaaaaactg attacctttt
     7321 tagtattagc tgtattcgta ttaagcgctt gcggcaataa caaatcagaa aaagtcacac
     7381 ttggcgttgc ttcaaatgac acaaaagctt gggaaaaagt aaaagaactc gctaaaaaag
     7441 aagatattga cttagaaatc aagcaatttt cggattataa cgttcctaac acagcactca
     7501 atgatggcga tatcgatatg aacgctttcc aacatttcgc atttttagaa gcgtttaaaa
     7561 aagcaaacaa gggcactgaa attacaccaa ttcgtacaac tgtattggca cctttaggca
     7621 tttactcaga aaaaatcaaa gacattaaag atgtgaaaga tggcgccaaa gtggtcattc
     7681 caaacgacgt gtctaaccaa gcacgtgcat taaaattact tgaaaaagca gggcttctcg
     7741 aattaaacaa agatttcggt ttatcaagtt ctattaaaga tattaaaaac aaccctaaaa
     7801 acttagatat taaagcagtc gatgcccaac aaacagcaag agcattgtct gacgttgaca
     7861 tttcagtgat taacaatggt gtcgcaacaa aagcaggctt agacgcgaaa aaagatccga
     7921 tttatttaga ggcttctgac tctgatgcag ttaaacctta tatcaacatc atcgcagtca
     7981 actcgaaaga taaagacaat aaagtgtaca aacgtattgc tgaactgtac cattctgaag
     8041 aagcaaaagc agcattaaaa gaagatacaa aagatggtga gttaattatc gatttaaaac
     8101 aagacgaaat taaagccatt gaagatagtt tgaaataact tatgttaaac aaaacatact
     8161 aagattagct gtgaagaaat ttatgacgat agatttcttc acagctattt tttatagttg
     8221 tagagagaag tagatcgcgc agtcccgtgg atctttgaat ccgtaaaata aactgatcag
     8281 ctttactctc cttttgaaat tctatctcaa aagaacaagc agatctcttc tatcaattga
     8341 tgtcactaag atatgaaatg aaatccacaa tcataacgac gaatatcctc ttttctagtt
     8401 ggggagattc atttagtaac aaagtagcgt cagcagccat tattgataga ctcattcatc
     8461 atttaaaaat atttaaaatt acagtggatt cataacgact taaagactat ataagtgaaa
     8521 aagtataaac atacatcatt cttaaaccgc aaataaacga ctttttcaaa ccgctattga
     8581 caaagatata gacacaagaa aagaatgaag taaaatgata aaaagtaaaa agcaatccga
     8641 gattttaaag atctcaaaat aaaatacggc aaacaagtga aaatatatgg tgacagaaga
     8701 aactattcta ctactgatca tgatgctacc ttcatgagaa taaaagatga ccatatgaga
     8761 aacggtcagt tgtaacccgg ttataaacta cagatggcaa tcattaatcg attaacgctt
     8821 atttaaagtt ctaacttagg gctattctaa agcaccacaa ataagcagct ttcatattca
     8881 aagacaaaac acatttatca aaagagaagg atagatgttg aaccaacttt tggaaatctg
     8941 aaagctaatt tgggtttcca aagattatcg gttcccatcc aattaaaagg tcagtgtgaa
     9001 cttggcatcg cactatggca gtaaatatac gaaaactggc caaaataagt gctagttttc
     9061 attctttcat aagaaaaaag ccgttaaatt ctaaaaaaat gaattttaac ggctttttct
     9121 tgaaggggct gaagctctat tcctaaccct tataaataat ttcaattatt tttctttgct
     9181 atctttttta cggtttctaa ataatattaa tgaacctgct gctgcaaata atgctccaaa
     9241 tagtcctcca ttattatttg agttactacc tgtatcaggt aattcttttg gattagaatc
     9301 agcgtccgca tctgcatctg catcggcatc agcgtcggca tccgcatccg catccgcatc
     9361 tgcatcggca tcagcgtcgg catccgcatc ggcgtccgca tccgcatcgg catcagcatc
     9421 agcgtcggca tcagcatcgg catcagcgtc cgcatctgca tcagcgtcgg catccgcatc
     9481 ggcatccgca tcggcatcag cgtcggcatc cgcatctgca tctgcatcag catcagcgtc
     9541 ggcatccgca tcggcgtcag catctgcatc agcgtcggca tccgcatcgg cgtccgcatc
     9601 tgcatcagcg tcagcgtcag cgtcggcatc cgcatctgca tctgcatccg catctgcatc
     9661 tgcgtcggca tccgcatctg catcagcatc cgcatccgca tccgcatcgg catcagcgtc
     9721 ggcatcagca tctgcgtccg catctgcatc agcgtcggca tccgcatctg catccgcatc
     9781 ggcatcagcg tcggcatccg catctgcatc tgcatcggca tcagcgtcgg catccgcatc
     9841 agcgtcggca tccgcatcgg catcggcgtc ggcatccgca tcggcatccg catcagcatc
     9901 agcgtccgca tctgcatccg catcggcatc ggcatcagcg tcggcatccg catctgcatc
     9961 agcatcagcg tcagcatctg catccgcatc cgcatcagcg tcagcatcgg catcggcatc
    10021 cgcatctgca tccgcatcag catcagcatc tgcgtcggca tccgcatctg catctgcatc
    10081 agcgtcggca tccgcatctg catcagcatc tgcatctgca tcagcgtcgg cgtccgcatc
    10141 tgcatcagcg tcagcatctg catccgcatc tgcatctgca tcagcatcag cgtcggcatc
    10201 cgcatctgca tccgcatcag catctgcgtc ggcatccgca tctgcatcag catccgcatc
    10261 cgcatccgca tcggcatctg cgtcggcatc cgcatctgca tcagcgtcag catcagcgtc
    10321 cgcatcggca tccgcatcag cgtcggcatc cgcatctgcg tccgcatctg catcagcgtc
    10381 ggcatccgca tcggcatccg catctgcatc ggcatccgca tccgcatcgg cgtcggcgtc
    10441 agcgtcagcg tcggcatccg catcggcatc cgcatctgca tcagcgtcgg catccgcatc
    10501 cgcatctgca tcagcgtcgg catcagcgtc ggcatccgca tccgcatcgg catcagcgtc
    10561 ggcatccgca tctgcatctg cgtcggcatc cgcatctgca tccgcatctg catcagcatc
    10621 agcgtcggcg tccgcatctg catcagcgtc agcatcagcg tcagcatctg catccgcatc
    10681 agcgtcagca tcggcatctg catccgcatc tgcatccgca tcagcatcag catctgcgtc
    10741 ggcatccgca tctgcatctg catcagcgtc ggcatccgca tcggcgtccg catcagcatc
    10801 agcgtcggcg tccgcatctg catcagcgtc agcatctgca tccgcatcgg catccgcatc
    10861 tgcatctgca tcggcatccg catccgcatc ggcatccgca tcagcgtcgg catccgcatc
    10921 ggcatccgca tcggcatcag cgtcggcatc cgcatccgca tctgcatcag cgtcggcatc
    10981 agcatcagca tcagcatcag cgtcagcgtc agcatcagcg tcagcatctg catccgcatc
    11041 ggcatccgca tcagcgtcgg catccgcatc cgcatcggca tcagcgtcgg catccgcatc
    11101 tgcatcagcg tcggcatccg catcggcatc agcgtcggca tccgcatctg catccgcatc
    11161 ggcatcagca tcagcgtcgg cgtccgcatc tgcatcagcg tcagcatcag cgtcagcatc
    11221 tgcatccgca tccgcatccg catcagcgtc agcatcggca tcggcatccg catcggcatc
    11281 cgcatcagca tcagcatctg cgtcggcatc cgcatctgca tctgcatcag cgtcggcatc
    11341 cgcatctgca tctgcatctg catcagcatc agcgtcggcg tccgcatccg catcagcgtc
    11401 agcatctgca tccgcatctg catctgcatc agcatcagcg tcggcatccg catcggcgtc
    11461 cgcgtcggca tccgcatctg catcggcgtc ggcatccgca tctgcatccg catctgcatc
    11521 agcgtcagca tcggcatcgg catccgcatc tgcatccgca tccgcatcgg cgtctgcatc
    11581 tgcatccgca tcggcgtcgg catccgcatc tgcatccgca tctgcatcag cgtcggcatc
    11641 cgcatcagca tcagcgtcag catcagcgtc agcatctgca tccgcatcgg catccgcatc
    11701 agcgtctgca tccgcatcgg cgtccgcgtc ggcatcagca tctgcatccg catcggcgtc
    11761 ggcgtcagcg tcggcatccg catcgtcttc ttccacaatc acttttactg aaact
//
LOCUS       DANHOL010000072        11790 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.072, whole genome shotgun sequence.
ACCESSION   DANHOL010000072 DANHOL010000000
VERSION     DANHOL010000072.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 11790)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11790)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11790
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.072"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            61..867
                     /locus_tag="PTC08_001419"
     CDS             61..867
                     /locus_tag="PTC08_001419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002475624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00159 family protein"
                     /protein_id="HDK5682928.1"
                     /translation="MQISHLFENLSTLEVITGILDLLIVWYVIYLLITVFKGTKAIQL
                     LKGILFILVGKAISEYLQLTTTSRLFDLVLQWGFLAIIVIFQPEIRRALEQLGRGSLF
                     KRYATTSTVEVPKLVDSVSKAVQYMAKRRIGALIVFEKETGLQDYIETGIPMHSDISQ
                     ELLTNVFIPNTPLHDGAMIIQGDKIATAASYLPLSDSPKIAKSLGTRHRAAVGISEVS
                     DAFTVVVSEETGSVSVTFDGKLRKDISPEVFEELLTEHWFGSHFGKKGVN"
     gene            868..1800
                     /locus_tag="PTC08_001420"
     CDS             868..1800
                     /locus_tag="PTC08_001420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbbR-like domain-containing protein"
                     /protein_id="HDK5682929.1"
                     /translation="MLESKWGLRFTAFILALLLFLSVNHVLGDSFNTDSVSNDGNKTI
                     KNAPVEVINNDKSLYISGAPDTVDVELNGPQSKVLRAQKTEDFKVVLDASNIQIGEYS
                     LDFQVRGLDKDINYRVYPKDVTVSVEKKETRTYHIEPNVSPYVIDPNFKITDTSVSPD
                     TVKITGGKAQLDRIAFVKASFRNENNISEKTTGEANISVFDKNMNKLDVQVDHPTVDL
                     TAEVEPYSKKVKLDVSTKGTPADGINISSIDLESDTIEIFGNRHDLEKINEISGEIDV
                     KGVSSDTEREVKLDLPKNVTKTSPEKLKAKINVE"
     gene            1828..3183
                     /locus_tag="PTC08_001421"
     CDS             1828..3183
                     /locus_tag="PTC08_001421"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HDK5682930.1"
                     /translation="MGKYFGTDGVRGVANKELTPELAFKLGRYGGYVLAHNEDKKHPR
                     VLVGKDTRVSGDMLEHALIAGLVSIGAEVMRLGVISTPGVAYLTREMGAELGVMISAS
                     HNPVADNGIKFFGSDGFKLSDAQENEIEALLDQENPDLPRPTGKDIVHTSDYFEGAQK
                     YLSYLKSTIEVNLEGLKIALDGAHGSTAALAPFLFGDLEADTVTIGCNPDGYNINDET
                     GSTHPQALAQKVVDNECDFGLAFDGDGDRLIAVDEKGQIVDGDQIMFVIGQEMAKNQE
                     LNDNMIVSTVMSNLGFYKALEAEGIQSDKTKVGDRYVVEEMRRGHYNLGGEQSGHIVM
                     MDYNTTGDGLLTGVHLAAVVKRSGKKLSELAGQMKKYPQSLVNVRVTDKYGVEDNQDV
                     KAVMDEVEAEMNGEGRILVRPSGTEPLVRVMVEAKTDEDAHGFAERIAKVVEEKMGLD
                     A"
     gene            complement(3309..4415)
                     /locus_tag="PTC08_001422"
     CDS             complement(3309..4415)
                     /locus_tag="PTC08_001422"
                     /EC_number="1.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannitol-1-phosphate 5-dehydrogenase"
                     /protein_id="HDK5682931.1"
                     /translation="MKALHFGAGNIGRGFIGFILADNQFDVTFADVNTDIVNTLKAEQ
                     AYEVTLADETQTKTTIQNVNAIHSAEEPEALKNAILEADLITTAVGVNILPIIAKSLA
                     PILKTRTTPVNIVACENAINATDALKAAILDEVDTLDANIHFSNAAVDRIVPMQRNVN
                     ILDVTVEPFYEWVIEQDTWHGQQLDGVKYVDALTPYIERKLLTVNTGHAYLAYAGQYF
                     GHQTILEAVKDVKIVKALELTLTETSRYITNTFDFSVEEQAAYRQKIIDRYHNKYLSD
                     DIQRVGRGVLRKLGPQDRIMKPLKALYAANEPHDALTQLAAYALVYKDAQDPEAVQKE
                     ERIQAVGVETFLQEHAELDDQLAHAIANKYQKLS"
     gene            complement(4415..4849)
                     /locus_tag="PTC08_001423"
     CDS             complement(4415..4849)
                     /locus_tag="PTC08_001423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HDK5682932.1"
                     /translation="MENLLRDENILLNQSISTQEEAIEKAGQLLVDSGVVKAGYVQAM
                     KDREQIVSTFMGNALAIPHGTDEAKNEVIASGLSLLQIPEGLLWNGEEVKVVIGIAGK
                     DGEHLDLLSQIAMTFSEEENIHKIVNAASPQAIRQVFEEADA"
     gene            complement(4867..6897)
                     /locus_tag="PTC08_001424"
     CDS             complement(4867..6897)
                     /locus_tag="PTC08_001424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020220323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BglG family transcription antiterminator"
                     /protein_id="HDK5682933.1"
                     /translation="MYIKRRERDILEILLKNQGLPISRYDIAQQLGVSSRTVHRELND
                     LDATLAPFEITIQRPKNQGLLLVGAHDDISRLQQELGQDTVIDLSTEEQKVIILYALI
                     QSNEPVKQVGLASEIGASLQQLSKVLDELEQDLNQFKIKLIRKRGVGISILGSEMHKR
                     ELLSQLMMERLDSTSVYSVIENHFVFQSLNHNRLPMVDMKEIFQVERLLMDDLDHLPY
                     ALTESSYLALIVHIVLSIERMRHEQYVSINDDTMAEVQATDEYHIACKISARLGQHYG
                     IKFNPAEVAFIAIHLRGSKRKNDKEDQQLSQNVPQVAALIDMVATETRLKFNNINELQ
                     EGLLLHLTPALNRIHAKIETYNPMTIRIQSAYPSLFQAVQHAVNDLWPHLHFPDHEIA
                     FLVLHFGGAIQKRKHASSVLVVCSSGVGTSRILANRLEETFPMIDRTTQMSVSDLKSH
                     DLTQYDAIISTVELDLEQPYLTVSPLLPEHEIAKTSAFLHQQLPQMAVDHLGLNNPDT
                     SPTVTATIDATKVNRKIDAMRESLQLLDAFEVFHTDLTDWSYDIAQHLYHKKITHDLI
                     AVQQLLKERHDKQSFVLSPFRVAIPHFISAHVEIPYIGVWHLATPYDFDEGLTVDTLF
                     CVFLPEDTHLQPLVSEIYSQLSLALDEHNDALTDAEHIEQWIKQSIITLSQQ"
     gene            complement(6928..8493)
                     /locus_tag="PTC08_001425"
     CDS             complement(6928..8493)
                     /locus_tag="PTC08_001425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannitol transporter subunit IICB"
                     /protein_id="HDK5682934.1"
                     /translation="MANQEKAEQKPMKEQIQRRIQAFGSFLSSMIMPNIGAFIAWGLI
                     TALFIPDGWLPNEELAKMVDPMIKFLIPLLIAFSGGRLVHDLRGGIVGATATMGIIAA
                     FPDTPMLIGAMIMGPLVGWLMKKVDQFIQPRTPNGLEMLFNNFSAGFLAFFMTILGFK
                     ILGPIVEGLMKILGAGVDFLVSHHLLPLVSIIIEPAKVVFLNNAINHGVLTPLASEQV
                     SQAGRSILYTLESNPGPGLGILLAYMIFGKGTEKATSYGAAFIHFIGGIHEIYFPYVL
                     ARPLLIFAAMAGGMTGVATFSLFNFGLTGPASPGSILAYFAVTPKGSYWVMLLSIFLS
                     TLVTFIVASAILKFSRDAKTSLADATAKMEATKGKKSRVRDTFIQEDEAATTTTGESS
                     SATTDNALLVEEDPEVLLDKYDTENVEAHDYSHIDHIIFACDAGMGSSAMGASMLRKK
                     FQKAGIDNVEVTNTAINQLPGESQLVITQKTLTDRAIKQVPNAIHLSVDNFLNSPRYE
                     ELIKNIKEKENKK"
     gene            9426..11228
                     /gene="glmS"
                     /locus_tag="PTC08_001426"
     CDS             9426..11228
                     /gene="glmS"
                     /locus_tag="PTC08_001426"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HDK5682935.1"
                     /translation="MCGIVGYIGYQNSKEILLKGLEKLEYRGYDSAGIATRNDNEVTV
                     TKAKGRIAELRREADNEIDGQTGIGHTRWATHGIPNYENSHPHQSTSERFTLVHNGVI
                     ENYEELKEEYIPNVTLVSDTDTEVIVQLVEHFSETGLSTEEAFTKVVSLLHGSYALGL
                     LDREDSETIYVAKNKSPLLVGIGEKFNVIASDALAMIQVTSEYKELKDQEIVLVKRDD
                     VIIKNLDGEVVERESYIAEIDASDAEKGIYEHYMLKEIHEQPAVMRRIIQEYQDDQGE
                     LKIDPEIVKDVKEADRIYIIAAGTSYHAGLVGKEYIEKWAGIPTEVHVSSEFVYNMPL
                     LSENPLFIYISQSGETADSRAVLVETTKLGHKSLTITNVAGSTLSREADHTLLLHAGP
                     EIAVASTKAYTAQIAVLSILSQVVATERGRKADIDLLRELAKVTTAIETIVDDAPKME
                     QIATDFLETTRNAFFIGRTIDYNVSLEGALKLKEISYIQAEGFAGGELKHGTIALIEE
                     GTPIVALATQEGVNLSIRGNVKEVVARGAHPCIISMEGLEKPGDTYVIPHVHALLTPL
                     VSVVTLQLISYYAALHRGLDVDKPRNLAKSVTVE"
     gene            11606..>11790
                     /locus_tag="PTC08_001427"
     CDS             11606..>11790
                     /locus_tag="PTC08_001427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000703837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDK5682936.1"
                     /translation="MLISKAFIKGYRNLKEIELELNRMVIFIGENNSGKSNILKAITL
                     PFLNNEIGSVNKNLRWD"
BASE COUNT         3769 a         2033 c         2463 g         3525 t
ORIGIN      
        1 aaacgcttat gaacattggt ataataagga acatgggaat agattaccgg aggagatact
       61 atgcaaattt cacacctctt tgaaaattta agcacgcttg aggtcatcac aggtattcta
      121 gatttattaa ttgtatggta tgtcatttat ttactgatta cagtctttaa agggacgaaa
      181 gcaattcaat tattaaaagg gatattattt atacttgtag ggaaagcaat cagtgaatac
      241 ttacaactga caacgacttc gagacttttt gatttggtat tacaatgggg gttcttagcc
      301 attattgtaa ttttccaacc tgaaattaga cgtgcgttag aacaacttgg gagagggagc
      361 ttgttcaaac gctatgccac gacgtctaca gtagaagtgc ccaaattagt ggattcagtc
      421 tctaaagccg tgcagtatat ggccaagcga cggataggtg cgttaattgt ctttgaaaaa
      481 gaaaccggtt tacaggatta catcgaaacg ggtataccga tgcattctga catttcacaa
      541 gaattattga cgaacgtctt tattccgaac acgccattac atgatggcgc gatgattatt
      601 caaggtgaca aaattgcaac agcggccagt tatttaccgt tgtcagatag tccgaaaatc
      661 gcgaaaagtc tcggcacacg tcatcgtgca gcagttggaa tttcagaagt ttctgatgcc
      721 tttaccgtcg ttgtgtctga agagacggga tcagtttctg tcacatttga tgggaaattg
      781 agaaaagata tatcacctga agtgtttgaa gaactattaa cagagcattg gtttggctca
      841 cactttggaa agaaaggtgt gaattagatg ttagaatcaa aatggggctt acgttttact
      901 gcttttattt tagcattgct cttattttta tcagtcaatc acgtgctcgg tgattcgttt
      961 aatacagaca gtgtttccaa tgatgggaat aaaacgatta aaaatgcacc ggttgaagtg
     1021 attaacaacg ataaaagtct ttatatctct ggcgcgcctg atacggttga tgtcgagttg
     1081 aatggaccgc aatctaaagt gttacgcgca caaaaaacag aagattttaa agttgtgtta
     1141 gatgcgtcaa acattcaaat aggtgaatat tcgctagact tccaagtgcg tggcttagat
     1201 aaagatatta actatcgtgt ttatccgaaa gatgtcacag tctcagttga gaaaaaggaa
     1261 acgagaacat atcatattga gccgaatgtg agtccatatg tgattgatcc caatttcaag
     1321 attacagata catcggtgtc accagatacg gtaaaaatca cagggggcaa ggcacaatta
     1381 gaccgcatcg catttgtgaa agcaagtttc cgtaatgaga acaatatttc agaaaagacc
     1441 acgggagaag cgaatatttc agtttttgat aagaacatga ataaactgga tgtgcaagtc
     1501 gatcatccga cagttgattt aacagcagaa gtggaacctt attccaaaaa agttaaatta
     1561 gacgtgtcga caaaaggaac ccctgcagat ggtatcaata tatcgagtat tgatctggag
     1621 tcagatacga tagaaatatt tggaaaccgt catgatttag agaagatcaa tgaaattagt
     1681 ggtgaaattg atgtgaaagg tgtttcatct gatacagaac gggaagtaaa gctagactta
     1741 ccgaaaaatg tgacgaaaac atcaccagaa aaattaaaag caaaaataaa tgtagaatga
     1801 tgaatgaaat aaaaggagat ttgatttatg ggtaaatatt ttgggacaga tggtgtaaga
     1861 ggcgttgcga acaaagaact cacacctgag ctcgctttca agttaggtcg ttatggggga
     1921 tatgttttag cgcataacga agataaaaaa catccacgtg tccttgtagg taaagataca
     1981 cgtgtttcag gtgacatgtt agaacatgca ttaattgcag gtttagtttc tattggtgct
     2041 gaagtcatgc gtttaggtgt catttctact ccaggtgtgg cttatttaac aagagaaatg
     2101 ggtgcagagt taggtgtgat gatttcagct tcacataacc ctgttgcgga taatggtatt
     2161 aagttctttg gttcagatgg cttcaaattg tcagatgcgc aagagaatga aattgaggca
     2221 ttattggatc aagaaaatcc tgatttacca cgtcctacag gtaaagatat tgtgcacaca
     2281 tcggattatt tcgaaggcgc acaaaaatat ttaagttatt taaaatcaac tatcgaagtg
     2341 aatttagaag gcttaaaaat tgcattagac ggtgcacacg gttcaacagc agcactagca
     2401 ccatttttat tcggtgacct tgaagcagat acagtgacaa ttggctgtaa tccagatggt
     2461 tacaatatta atgatgagac aggttcgaca cacccacaag cgttagcaca aaaagttgtc
     2521 gataatgaat gtgactttgg cttagcattt gatggtgatg gtgaccgatt aatcgcagtc
     2581 gatgaaaaag gtcaaattgt cgatggtgat caaattatgt ttgttatcgg acaagagatg
     2641 gcgaaaaatc aagaattgaa cgataatatg attgtgtcaa cagtgatgag taacttaggt
     2701 ttctacaaag cattagaagc agaaggtatt caatctgata aaacaaaagt cggtgatcgc
     2761 tatgttgtgg aagaaatgcg tcgtggtcac tacaatttag gtggcgagca atcaggtcat
     2821 atcgttatga tggattacaa tacaacaggg gacggtttat taactggtgt acatttggca
     2881 gcagttgtga aacgttcagg taaaaagttg agtgaacttg caggtcaaat gaagaaatat
     2941 ccgcaatcac ttgtgaatgt tcgtgtaacg gataaatatg gcgtagaaga caatcaagac
     3001 gtcaaagctg taatggatga agttgaagca gaaatgaatg gtgaaggtcg aattttagtt
     3061 cgcccatcag gtacagaacc actcgtacgt gtcatggtag aagctaaaac tgacgaagat
     3121 gcacatggct ttgcagaacg tattgcaaaa gtagtagaag aaaaaatggg cttagacgct
     3181 taaaaataat gccccctcta acaagtgtca tgtgtacctt gttaagaggg ggaggttttt
     3241 gtttgagaaa ttgagaccaa acaattgata aaaaagctgg gatgcgcaat tcccggcttt
     3301 ttttaatgtt atgataattt ttgatatttg ttcgcaatag catgtgctaa ttggtcatct
     3361 aattcagcat gttcttgtaa aaacgtttca acaccgactg cttgaatccg ttcttctttt
     3421 tgaacagctt ctggatcttg tgcatctttg tacacgaggg cataagctgc aagttgtgtt
     3481 aacgcatcat gtggttcatt ggctgcatat agtgctttca atggtttcat aatacggtct
     3541 tgtggaccta gttttcttaa aacaccgcgt ccgacacgtt gaatgtcatc tgacaaatat
     3601 ttattgtggt atctgtcgat gattttttga cgatatgcgg cttgttcttc tacagaaaag
     3661 tcaaatgtgt tggtaatata acgacttgtt tctgttaatg taagttctaa tgcttttaca
     3721 attttgacat ctttaaccgc ttctaaaatc gtttgatgac cgaaatactg acctgcataa
     3781 gcaaggtaag catgacctgt attcactgtc agcaatttac gttcgatata aggtgtgagc
     3841 gcatctacat atttcacacc gtctaattgt tgaccgtgcc aagtgtcttg ttcgattacc
     3901 cactcgtaaa atggttctac tgttacatct aaaatattga cattgcgttg catagggacg
     3961 atacggtcta cggcagcatt agagaaatga atgttggcat ctaatgtatc tacttcatct
     4021 aaaattgctg ctttcaatgc atctgtcgca ttaatcgcat tttcacaagc aacgatgttc
     4081 acaggtgttg tacgcgtttt taaaatcggt gctaatgatt ttgcgatgat tggtaaaatg
     4141 ttgacaccta ctgcagttgt aatcaaatct gcttctaaaa tcgcattttt aagtgcttct
     4201 ggttcttcag cagaatgaat ggcattgacg ttttgaattg tcgtcttcgt ttgtgtctca
     4261 tcagcgagtg tcacttcata agcttgttct gctttaaggg tattgacgat atctgtatta
     4321 acatccgcaa atgtcacgtc aaactggttg tctgcaagga taaagccaat aaaaccacga
     4381 ccgatattac ccgctccaaa atgaagtgct ttcattatgc atccgcctcc tcgaacactt
     4441 gacgaattgc ttgtggagat gcagcattaa caattttgtg tatattctct tcttcactga
     4501 atgtcattgc aatttgtgat aataagtcta aatgttcgcc atctttacca gcaataccaa
     4561 tgaccacttt cacttcttca ccgttccaga gtaagccttc aggaatttgt aataatgata
     4621 aacctgatgc gatcacttca tttttcgctt catctgtgcc gtgtggaata gctaaagcgt
     4681 tacccataaa tgttgataca atttgttcac ggtctttcat cgcttgtaca taacctgctt
     4741 taacgacacc actgtctaca agtagttgtc ctgctttttc aattgcttct tcttgtgttg
     4801 aaatagattg gtttaataaa atattttcat ctcttaataa gttttccata atcaaatcgc
     4861 tccttgttat tgttgactca atgtgataat actttgctta atccattgtt caatgtgttc
     4921 tgcgtcggtc agtgcgtcat tatgctcatc taaagcaagc gacagctgac tatagatttc
     4981 actgacgaga ggttgaaggt gtgtatcttc cggtaaaaag acacagaata acgtgtcgac
     5041 agtgagtcct tcatcaaagt cgtagggtgt cgctaagtgc catacgccga tgtaaggtat
     5101 ttcgacgtgt gcacttataa aatgtggaat cgcgactcga aatggggata atacaaaaga
     5161 ttgcttatca tgacgttctt tcaaaagttg ttgtacagct attaaatcgt gcgtaatctt
     5221 tttgtgataa agatgttgcg cgatatcata tgaccaatcc gtcagatctg tatggaatac
     5281 ttcaaatgca tctaacagtt gtaaactttc gcgcatcgca tcaatttttc tgttcacttt
     5341 tgtcgcatca atcgtagccg ttacagtagg tgatgtgtcc ggattattta aacccagatg
     5401 gtctactgcc atttgcggta gttgttggtg caaaaatgca gaagttttcg caatttcatg
     5461 ttcgggtagt agggggctca ccgttaaata cggttgctct aaatctagct ctacagtaga
     5521 aataatcgcg tcatactgtg tgaggtcatg cgatttcaaa tcactcacag acatttgtgt
     5581 cgtacggtca atcatgggaa atgtttcttc taagcgattg gccaaaatac gacttgtgcc
     5641 gacaccacta ctacatacga caagtacaga tgatgcatgt ttgcgttttt gtatagcgcc
     5701 accaaaatgt aagactaaaa aagcaatttc atggtctgga aaatgaaggt gtggccataa
     5761 atcattgacg gcatgttgta ccgcttgaaa tagtgacgga taagcgcttt gaatgcgtat
     5821 cgtcatcgga ttgtaagttt cgattttggc gtgtatccga tttaaagcag gcgtgagatg
     5881 taacaacaaa ccttcttgca gttcattgat attgttaaac ttcagacgag tctctgttgc
     5941 gaccatgtca attaacgcag caacttgtgg tacattttgt gataattgtt gatcctcttt
     6001 atcatttttt cgctttgacc ctcgtaaatg aatcgcaata aaggcaactt cagctgggtt
     6061 gaacttaatg ccataatgct gtccgaggcg agctgaaatt ttacaagcaa tgtgatattc
     6121 atcagtcgct tgaacttctg ccatagtgtc gtcgttaata gagacatatt gttcatgacg
     6181 catacgctca atacttaata cgatgtgaac aatgagtgcc aaataacttg attctgtcaa
     6241 tgcatacggc aagtgatcca aatcatccat aagcaatcgt tcaacttgaa aaatttcttt
     6301 catatcgacc ataggcagtc ggttatgatt taacgattga aagacaaaat ggttttcaat
     6361 gacggaatac acacttgtac tatctaagcg ttccatcatc aattggctta acagttcacg
     6421 tttatgcatt tcgctaccga gaattgaaat tccgacaccg cgttttcgaa tgagcttaat
     6481 tttgaactga ttcaaatctt gttcgagttc atccaacact ttgctcagtt gttgcagtga
     6541 tgcgccaatt tcagaagcga gtccgacttg ttttacgggc tcattagact gaattaaagc
     6601 atataaaata ataacttttt gttcttctgt acttaaatca atgacagtgt cttgaccgag
     6661 ttcttgttgt aatcggctaa tatcatcatg agcaccgacc aagaggagtc cttgattttt
     6721 aggacgttga atggtgattt caaaaggtgc gagggtcgca tcgagatcgt tcagttctcg
     6781 atgcaccgtt cgcgaagaca cccctaattg ttgagcgata tcatatctag aaataggtaa
     6841 cccttgattt ttcaggagta tttctaatat gtcacgctcc cgacgtttga tatacatgaa
     6901 gtaatcacat ccccattacg cgatttctta ttttttattc tctttttctt taatgttttt
     6961 aattaactct tcatagcgtg gtgagtttaa gaaattatct acagaaagat gaatcgcatt
     7021 aggtacttgt ttaatcgcac ggtctgttaa tgttttttga gtaatgacaa gttgcgactc
     7081 accaggaagt tggttgattg ctgtatttgt cacctctaca ttgtcgatac cagctttttg
     7141 gaatttttta cgtaacatac ttgcacccat tgcactcgaa cccataccag catcacaagc
     7201 gaaaataatg tggtcgatat ggctataatc atgtgcttca acattttcag tgtcatattt
     7261 gtctaacaat acttctggat cttcttctac aagtaatgcg ttgtcagttg ttgcagatga
     7321 cgattcacca gttgtagttg tagctgcttc atcttcttga atgaatgtgt cgcgaacacg
     7381 agatttttta ccttttgtcg cttccatttt cgctgttgca tcagcaagac ttgttttagc
     7441 atctctagaa aatttcaaaa tggcagatgc gacgatgaat gtcactaatg ttgataagaa
     7501 aatgctgagt aacattaccc agtaactgcc tttaggtgtc accgcaaagt aagcaaggat
     7561 tgaacctggt gacgctggac ctgttaagcc aaagttaaat aagctaaaag ttgcaacacc
     7621 tgtcatacca cccgccattg ctgcaaagat taacaacgga cgtgcaagaa cgtaagggaa
     7681 gtaaatttca tgaataccac cgataaagtg gatgaatgct gccccgtatg atgttgcttt
     7741 ttcagtgcct ttaccaaaaa tcatataagc aagtaaaata cctaaaccag gtccagggtt
     7801 agactctaat gtgtaaagaa tcgaacgacc tgcttggctc acttgttctg atgcgagcgg
     7861 tgtaagcaca ccatgattaa tcgcattgtt taaaaagaca acttttgcag gttcaataat
     7921 gatacttaca agtggaagta agtggtgtga aactaggaaa tctacacctg caccgagaat
     7981 tttcattaaa ccttcaacaa taggtcctaa aattttaaaa ccgagaatag tcatgaagaa
     8041 tgcaaggaaa cctgctgaaa agttattgaa tagcatttct aagccgtttg gtgtgcgtgg
     8101 ttgtataaac tgatccactt ttttcatcag ccaaccgact aatggaccca taatcatcgc
     8161 accgattaac ataggtgtat ctgggaatgc agcgatgata cccattgttg cagtcgcacc
     8221 aacaattcca ccacgtaaat catggacaag acgaccccca ctaaatgcga tgagtaatgg
     8281 aattaaaaac ttgatcatcg ggtcgaccat tttggcaagt tcctcatttg gaagccagcc
     8341 atcaggaatg aataatgcag taatcaaacc ccaagcaatg aacgcaccga tattcggcat
     8401 gatcatacta cttaaaaatg agccgaatgc ttgaatgcga cgttgaatct gttctttcat
     8461 cggcttttgt tctgcttttt cttgatttgc catctatttg acacccctta ttaaaaaatt
     8521 ggtttgtgtg tacatcttaa agtgttattt agtcgtttac aataaataga aaatgccaac
     8581 ttgtcacgtt gaaaatgaca aaatgcattt agtgatataa atatagaagg aacgggatgg
     8641 cgatgaagaa atggtttaga aaacaataac caaaaattat gcgacaatag taaaaagaaa
     8701 tgaagcggct tcgtgctgtg tttaagatga gacgtgaaat ggcgtgtaaa atgacaaatg
     8761 atgtctcgat gttacttttt agaaagggct attgagagag aaaaatgaca aatggtgtta
     8821 atgaggacaa actaatgcat aacttaaagt gaaagagatt ttaaaggata gatgagggaa
     8881 ttgcattgac cattgtgcgc aaataatgat taatgatttt aatggaacag cattgaatat
     8941 caaaaatata taattaagta aaaaagcaca gtatatcaga ctcaaacatt taacaataat
     9001 tttcggaaat attgtacttt tatttgcaaa gaaagtttca ctcattgtac aataggttat
     9061 attctgatgg aggagggtag aggtagtcgg tattacaaag cgccagcgca agtacacact
     9121 atagattgtt gacctacata ctaaagcaga gtgtgtagca gatgtatagg ttgtagttgt
     9181 ggacgaggag gatagtgatc gaatatgatc ggcggatgct atcccggatg tggctcattc
     9241 gttagcttat taatcaaatc aacagggtaa cttgttggac aaagttagta agatcgccaa
     9301 tagcaaaata ataattagag aacgatgcta atgcaatttt cattattgag gcatgaaaac
     9361 agcatgtacc aatatgtgaa aaaatgtaca atggcaccgt tatttcaatg tggaggaatt
     9421 tatttatgtg cggaattgtt ggttatattg gatatcaaaa ttcaaaagag attttattaa
     9481 aaggtttaga aaagttagag tatcgtggtt atgactcagc ggggattgca acacgcaatg
     9541 acaatgaagt gactgttaca aaagcgaaag ggcgtattgc tgaattacgc cgtgaagcag
     9601 acaacgagat tgacggtcaa acaggtatcg gtcatacacg ttgggcgacc cacggtattc
     9661 ctaactatga aaattcacat ccacatcagt caacaagcga acgttttaca ctagtacaca
     9721 atggtgtgat tgaaaactat gaagaattaa aagaagaata tattcctaat gtgacacttg
     9781 tatcagatac agatactgaa gttattgtac aattagttga gcatttttca gaaactggtt
     9841 tatcaactga agaagcattt acaaaagtgg taagtttatt acacggttca tatgcattag
     9901 gtttattaga ccgcgaagat agcgaaacaa tctatgtcgc taaaaacaaa tcaccattat
     9961 tagtcggtat cggtgaaaaa ttcaacgtta tcgcttcaga tgcattagca atgattcaag
    10021 tgacaagcga gtataaagaa ttgaaagacc aagaaatcgt acttgttaaa cgtgatgatg
    10081 tcatcattaa aaacttagat ggtgaagttg ttgaacgtga aagctatatt gctgaaatcg
    10141 acgcttcgga tgctgaaaaa ggcatttacg aacactatat gttaaaagaa attcacgaac
    10201 aacctgccgt aatgcgccgt attattcaag aatatcaaga cgaccaaggt gagttgaaaa
    10261 tcgaccctga aattgtgaaa gatgtaaaag aagctgaccg catttacatc attgcagcag
    10321 gtacaagtta tcacgcaggt ttagttggta aagaatacat tgaaaaatgg gcaggtattc
    10381 cgacagaagt acatgtgtca tcagaatttg tatacaacat gccattatta tctgaaaacc
    10441 cattgttcat ctacatttct caatcaggtg aaactgcgga cagccgcgcc gtattagtag
    10501 aaacaacaaa actcggtcat aagtcactta caattacaaa tgttgcaggt tcaacattgt
    10561 cacgtgaagc ggatcacaca ttattgttac atgcaggtcc tgagattgcg gtagcgtcaa
    10621 ctaaagcgta tacagcacaa attgcggtat tatctatcct ttctcaagtc gtagcaacag
    10681 aacgtggtcg taaagcagac atcgacttat tacgtgaatt agccaaagtc acaactgcaa
    10741 tcgaaactat tgtagacgat gcaccgaaaa tggaacaaat tgcgacagac tttttagaaa
    10801 caacacgcaa cgcattcttt attggacgta cgattgacta caacgtcagc ttagaaggtg
    10861 cattgaaatt gaaagagatt tcatacattc aagctgaagg ttttgcaggc ggagaattaa
    10921 aacacggtac gattgcatta attgaagaag ggacaccaat cgtagcatta gccacacaag
    10981 aaggcgtgaa cctttcaatt cgtggtaacg tgaaagaggt tgttgcgcgt ggtgcacatc
    11041 catgtatcat ctcaatggaa ggccttgaaa aaccaggcga cacgtatgtg attcctcacg
    11101 ttcacgcgtt attaacacca ctcgtatcag ttgtgacatt acagttgatt tcatactatg
    11161 ccgcattaca ccgtggctta gatgtagata aaccacgtaa cttagcaaaa tcagtaacag
    11221 tggaatagaa aattatataa agctagtctt acgttagcaa aaaattgatc aataaaatga
    11281 tattgttatt taaaatgtaa aatgaatatt tgtgtattga acaactaata tccgttcgct
    11341 tataattaaa atgagtgagc ggatttttta tgggtgcgcc cggatgggca acatcttgat
    11401 gatgaaagtc cattacaagc tggatagagt gacgattgtt ttgtaagtgt caatacgtaa
    11461 agaaacttta aatgtaccct aggaatcgct taaaataatc agttaagcaa atttagttca
    11521 agtggataaa tcgattgatg atttaaatac aatggaattg aatgattgaa aaaataataa
    11581 aagaatttat aaggggcgaa aaaaattgtt aatatcaaaa gcttttatta aaggatatag
    11641 gaaccttaaa gagatagagt tagagttaaa tcgaatggta atctttatag gagaaaataa
    11701 cagcgggaaa agtaatatac tcaaagctat aacattacct tttttgaata acgaaatagg
    11761 tagtgttaat aaaaatttga gatgggacga
//
LOCUS       DANHOL010000073        11524 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.073, whole genome shotgun sequence.
ACCESSION   DANHOL010000073 DANHOL010000000
VERSION     DANHOL010000073.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 11524)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11524)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11524
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.073"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(<1..224)
                     /locus_tag="PTC08_001428"
     CDS             complement(<1..224)
                     /locus_tag="PTC08_001428"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682937.1"
                     /translation="MMKIKVKKEMNLLELIEYIKKNEIVDKVFFDKKGKGKGKVVVGD
                     DRHLYMTDLNLTDTFIVEVEEVITEETVIP"
     gene            complement(224..574)
                     /locus_tag="PTC08_001429"
     CDS             complement(224..574)
                     /locus_tag="PTC08_001429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682938.1"
                     /translation="MIPKFRAWDKTENLMSDVREISFFDKYVELESGAFRGFDEVALM
                     QSTGLTDKHIVDVYQGDIVWDDMDEEYGVVRIEEAKTIIEWDIYVEDLFEKIELLEVV
                     GNIYENKKLLKEER"
     gene            complement(571..756)
                     /locus_tag="PTC08_001430"
     CDS             complement(571..756)
                     /locus_tag="PTC08_001430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682939.1"
                     /translation="MDLSESIKQRYRTDTAGKSPTELQKELRMRGVKGFVVNVNHNRV
                     TMLVDRRDVKRNKECIR"
     gene            complement(734..1693)
                     /locus_tag="PTC08_001431"
     CDS             complement(734..1693)
                     /locus_tag="PTC08_001431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003727760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA cytosine methyltransferase"
                     /protein_id="HDK5682940.1"
                     /translation="MIKILELFGGIGAPRKALLNLGYPHKAIDYVEIDEKSVRTYNAL
                     YDHLHKPQSVVGWNLKPDILVHGSPCQDFSRAGKRLGGNDEDKTRSSLMWETIRIIEN
                     MGKWKPKVVVWENVKGVLAKDMIHSFQKYFVEMERLGYTNSYQVLDARDFGIPQKRER
                     VFVVSMLDGHWFNFDTLERKPMRKVSEFIMDQADDKYTITSPSMLRAINKRNGFGGGL
                     KPIEEYSWTITTKQNRVPNSGIVPLGNGKYRLLTELECWRLMGFDDEDYYKVANEHPT
                     RKNATNGTLYKQAGNSIVVQVLEAIFKQIIDMGVINDGSIRIY"
     gene            complement(1717..2169)
                     /locus_tag="PTC08_001432"
     CDS             complement(1717..2169)
                     /locus_tag="PTC08_001432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3310 domain-containing protein"
                     /protein_id="HDK5682941.1"
                     /translation="MEIKDLKIGDKVSVEVGSQQFKDTDDEKWVYETIFGTAEVTKVN
                     ETYEYANVIFENGTYGEINADVEWYPIPSNTKIATHDRPAHYGDSNKDLIDYWCERYS
                     PEELRGAFKSQISKYVDRLGYKDDVVKELDKIIDYATRYKKHLKNLNS"
     gene            complement(2330..2650)
                     /locus_tag="PTC08_001433"
     CDS             complement(2330..2650)
                     /locus_tag="PTC08_001433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682942.1"
                     /translation="MTEAFSAEEIEVMELNGITRGCALNRIKRLGWSREQAITKPPIK
                     KRLKIVEDEKRAILKLESIIDPKEAYKRFMDSRKDKSHLTKYPQSVNPSDYYNYLKSK
                     VTWS"
     gene            complement(2663..2881)
                     /locus_tag="PTC08_001434"
     CDS             complement(2663..2881)
                     /locus_tag="PTC08_001434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682943.1"
                     /translation="MNKMYNLYNSNKEPVVVVSRNIDGQYHIKGLDDTQLAHINRTTD
                     DIEEFKSTFNLLSFEELGQLDLTELLDF"
     gene            complement(2874..3299)
                     /locus_tag="PTC08_001435"
     CDS             complement(2874..3299)
                     /locus_tag="PTC08_001435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RusA family crossover junction
                     endodeoxyribonuclease"
                     /protein_id="HDK5682944.1"
                     /translation="MTETRIEIFYLENDKNLGNPKGSSRPRFSGGGHTYMPAPYVKHK
                     KFVAEQLPDLMIDKPIRLTIEFYFKPSKSWPKHKKESHIGQPHSIKPDIDNLLKTILD
                     AGNNKLWTDDVLISEIRTFKKWDSVARTVLIIEELNNDE"
     gene            complement(3300..3479)
                     /locus_tag="PTC08_001436"
     CDS             complement(3300..3479)
                     /locus_tag="PTC08_001436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682945.1"
                     /translation="MVITSITKEFLKENLECSDVYAQKMLEWAQGDDKKLYDLFIQKR
                     VERNTRQYMTILEVD"
     gene            complement(3473..4246)
                     /locus_tag="PTC08_001437"
     CDS             complement(3473..4246)
                     /locus_tag="PTC08_001437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HDK5682946.1"
                     /translation="MRRMLSNISSKSLGKYQPVESEYDLTCEKCGRKYDWFKFANGYE
                     YKDGCECEIQKQAYEERKRNEQRKLNYIFNQSNVNPSLSTATVNNYKPQNENQVQAKQ
                     TAIEYVKTFSTDKPKSLILQGSYGTGKSHLAYAIAKAVKKQGFTAAFMHIPMLMDRIK
                     ATYNKNAVETTDELVSLLSSIDLLVLDDMGVENTEHTLNKLFSIVDNRVGKNNIFTTN
                     FSNKELNQNTNWQRINSRMKHNARTVKVIGDDYRERDAW"
     gene            complement(4256..4969)
                     /locus_tag="PTC08_001438"
     CDS             complement(4256..4969)
                     /locus_tag="PTC08_001438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000132054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDK5682947.1"
                     /translation="MSDQPSYYSIITANVRYDNRLTDSEKLLFAEITSLSNKYGYCTA
                     SNGYFAKLYEVTKVTVSRRIANLKECGYLQVEIIREGNEIKQRKIYPLTQMIIPINTN
                     DNTPINNSVNTPIITNVKENNTSINITRLNNTSSNSNSATDVTLAHFEEWWTLYDKKL
                     DRKKAFSLFKSALKKHGFETIMNGTREYLKTITNKQYQKYPKTFLSQESYLNDFTIEK
                     QESGMDKLERMKYDESYWD"
     gene            complement(4962..5633)
                     /locus_tag="PTC08_001439"
     CDS             complement(4962..5633)
                     /locus_tag="PTC08_001439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001124447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682948.1"
                     /translation="MPLITSYITQDDGTTTVVISGVELGDKETLLLDNGFDVEVDVNV
                     VDPFQITDKQRRKIFALCNDIEQHTGQPREYMRYMFMDYVSFVEGYDRLSLSNCSRTQ
                     AKQVIEAILDWVFYNDIPLNHKTSDLLKNDKSFLYWSTVNRNCVICGKPHSDLAHYEA
                     VGRGFNRNKMNHYDKHVLALCREHHNEQHAIGVKSFDKKYHLEDSWIKVDDRLNKMLK
                     GEKHE"
     gene            complement(5817..6254)
                     /gene="ssb"
                     /locus_tag="PTC08_001440"
     CDS             complement(5817..6254)
                     /gene="ssb"
                     /locus_tag="PTC08_001440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HDK5682949.1"
                     /translation="MLNRVVLVGRLTKDPEFRTTQSGVEVATFTLAVNRNYKNKNGEQ
                     QADFINCIVFRKQAENVNNYLNKGNLAGVDGRLQSRSYENQEGRRIFVTEVICDSVQF
                     LESKNNNQSNNQPQQQRGQAPAQDNPFTNANNPIDIDDEDLPF"
     gene            complement(6254..6922)
                     /locus_tag="PTC08_001441"
     CDS             complement(6254..6922)
                     /locus_tag="PTC08_001441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ERF family protein"
                     /protein_id="HDK5682950.1"
                     /translation="MSELNLYQKIADVKANIDGFTKDTKGYNYTYVSGSQVLHRIRSK
                     MIEHNLLLVPKTLEETYSVEDVTRYSPKYKKQVTTTEYTVKVKLIYTWINADKPEEQL
                     ELPFFAIGQQDDPAKALGTALTYSERYFLMKFFNIPTDEDDADAKQKKEQYTKPDAKA
                     IGTLKEEMLKFSELMQSLGKQVTIDDVQNQLGISDIQALTNAQISALIKKLDNWTKQA
                     KENE"
     gene            complement(6923..7408)
                     /locus_tag="PTC08_001442"
     CDS             complement(6923..7408)
                     /locus_tag="PTC08_001442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002486399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="siphovirus Gp157 family protein"
                     /protein_id="HDK5682951.1"
                     /translation="MTTLFNLTDAYQKVYDLIAEQGDETVLIETLQSINDALEEKADG
                     YVAVIKTLEADNVAIDEEIKRLRQRKTSNQNGISRLKESLQFAMESTGKEKFKTALNS
                     YSIANNPPSLDVTEESLIPKEYWVSQAPKLNKKDLLKDIKNGADIKGVEVKQTRSLRV
                     R"
     gene            complement(7392..7616)
                     /locus_tag="PTC08_001443"
     CDS             complement(7392..7616)
                     /locus_tag="PTC08_001443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682952.1"
                     /translation="MENEKMLITLERYDQLIAERAVYKNEAQRLEDENIELKAQIKDL
                     EEENNKIPLIHFNTSKTTDEEEVLIVDDTI"
     gene            complement(7628..7888)
                     /locus_tag="PTC08_001444"
     CDS             complement(7628..7888)
                     /locus_tag="PTC08_001444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1108 family protein"
                     /protein_id="HDK5682953.1"
                     /translation="MYFPNGEEFSGIIEVEGFKFRKHVTRQDDYILIEITDMTYKIIA
                     ETKVYDVSDVDIAQEVINAAIYDFIEYQTDDLDKIMAQLIKN"
     gene            complement(7970..8146)
                     /locus_tag="PTC08_001445"
     CDS             complement(7970..8146)
                     /locus_tag="PTC08_001445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682954.1"
                     /translation="MQYLIAWFNTVAVAIVLTTILAFAGMYFTTILFVVILAEAVTYN
                     LTKYVYDTLKKTEC"
     gene            complement(8134..8358)
                     /locus_tag="PTC08_001446"
     CDS             complement(8134..8358)
                     /locus_tag="PTC08_001446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682955.1"
                     /translation="MKKQFLTIKELQVLTGVSKSKATSIARALNEKMEEEGFVAIRGK
                     IPIQLAREKFPYNDLSDEAVKELEEQACNI"
     gene            complement(8355..9074)
                     /locus_tag="PTC08_001447"
     CDS             complement(8355..9074)
                     /locus_tag="PTC08_001447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001157023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ORF6C domain-containing protein"
                     /protein_id="HDK5682956.1"
                     /translation="MQNLQTFNFDELPVRTLTVDDEPYFVGKDVSDILGYSNSRKALS
                     DHVDEEDKLTSQIVTAGQRRNQTLINESGLYSLIFSSKLDSAKRFKRWVTSEVLPAIR
                     KTGTYQVPSDPMQALELMFEATKQTKEEIESVKAEVIDLKDNQKLDAGEYGLVTKTIH
                     QRVAYIRQIHGLPNNKEVNKPLYQNINNDVNTMAGIKTRTQLRQKHFNDVMDIITNWF
                     PSQSTMYVIRQLEMDFEEGGK"
     gene            9152..9379
                     /locus_tag="PTC08_001448"
     CDS             9152..9379
                     /locus_tag="PTC08_001448"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682957.1"
                     /translation="MKQFIDPDKFASAFVSNPNVSKVENADSSVEHYFDLYIKAFERA
                     VEYNQTIVDEQKKKKSGQKSNGLKIRNDLRI"
     gene            complement(9376..9543)
                     /locus_tag="PTC08_001449"
     CDS             complement(9376..9543)
                     /locus_tag="PTC08_001449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002500258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682958.1"
                     /translation="MEKKKIDLRSLTKDEFEGIRIPVLFLKIQLFFVENDISEEDCKV
                     LARMLNAYYED"
     gene            complement(9649..9843)
                     /locus_tag="PTC08_001450"
     CDS             complement(9649..9843)
                     /locus_tag="PTC08_001450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000390105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682959.1"
                     /translation="MQEQNKKVIYYYYDEEGNRRLWSVNNLNESVVSGYKARIEFFKK
                     KNPDVDNLFIQIDGVEFKLL"
     gene            9900..10163
                     /locus_tag="PTC08_001451"
     CDS             9900..10163
                     /locus_tag="PTC08_001451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002487566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRISPR-associated endonuclease Cas2"
                     /protein_id="HDK5682960.1"
                     /translation="MNSYIISYDLNDHKDYPKLISRIKDYPNAERINKSVWFVNSVFS
                     AKEIRDELKLFVDNDDSLFVAKLTGEAAWSNVICDSKHLKDYL"
     gene            complement(10167..10328)
                     /locus_tag="PTC08_001452"
     CDS             complement(10167..10328)
                     /locus_tag="PTC08_001452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014533246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682961.1"
                     /translation="MEQTANYRIYVEENECNGYVIYANSMSEVYELIKKVDRFTEIKI
                     SPSEKKGVK"
     gene            complement(10339..10575)
                     /locus_tag="PTC08_001453"
     CDS             complement(10339..10575)
                     /locus_tag="PTC08_001453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000243849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDK5682962.1"
                     /translation="MVLDLKRLRAERIACGITQDEMANLMGWKTRTPYAKRENGLVDI
                     GANEFIKMAKILGYETNNLDIFFTNNVPEKEQKA"
     gene            10770..11099
                     /locus_tag="PTC08_001454"
     CDS             10770..11099
                     /locus_tag="PTC08_001454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016170686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDK5682963.1"
                     /translation="MRSNDEIITIIKSAMKEQNLSLSELARRAGIAKSAVSRYLNLTR
                     EFPLNRAEDFAKALSISTEYLLGFDNSGQSQQQDNLAAHLDGDFSEDELAKIKEFAEM
                     VRKSRDK"
     gene            11116..>11524
                     /locus_tag="PTC08_001455"
     CDS             11116..>11524
                     /locus_tag="PTC08_001455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020220396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ImmA/IrrE family metallo-endopeptidase"
                     /protein_id="HDK5682964.1"
                     /translation="MSKYEELLIQHDYIDIEDKYNLPGNFKGFYDNDVILVDSKLNTY
                     QKHEILAEEIAHYKISAGNILDQSNMLNRKFELKARRLANESVISLQGLINAFNYGVQ
                     NIYDLALYFEVTKDFVLDTIQHYKQKYGLRTRYG"
BASE COUNT         3101 a         2299 c         1839 g         4285 t
ORIGIN      
        1 aaaggaataa cagtctcctc cgtaattact tcttctactt cgacaataaa tgtgtcagtc
       61 aaatttaagt cagtcatata aagatgtctg tcatcgccaa ctaccacttt tccttttcct
      121 ttaccttttt tatcaaaaaa cactttgtct actatctcat ttttcttaat gtattcgatg
      181 agttctaata ggttcatttc ttttttaact ttaatcttca tcatcatcgt tcctccttta
      241 acaatttttt gttttcgtaa atattcccaa caacctctaa aagttctatt ttctcgaata
      301 aatcttccac atagatatcc cactcaataa ttgttttagc ttcttcaatt cgaactacac
      361 catattcttc atccatgtcg tcccacacaa tatcaccttg atacacatcg acaatatgct
      421 tgtcagtcaa tcctgttgac tgcattaaag caacctcatc aaaacctcta aatgcaccac
      481 tttctagctc tacatattta tcaaaaaagc tgatttcacg aacatctgac attagattct
      541 cagttttatc ccatgctcta aatttgggta tcatcttata cactccttgt ttcgttttac
      601 atcgcgtctg tctactaaca tcgttacgcg attgtgattt acgtttacga caaaaccttt
      661 tacgccacgc atgcgtaatt ccttttgtaa ttctgtcggc gatttgcctg ctgtatcagt
      721 gcgatagcgt tgtttaatag attctgatag atccatcgtt aatcacaccc atatcaataa
      781 tttgcttaaa tatcgcttct aaaacttgta caacaatgct atttcctgct tgtttatata
      841 acgttccatt tgtcgcgttt ttgcgtgtag gatgctcatt tgcgactttg taataatctt
      901 catcatcaaa gcccattaaa cgccaacact ctaattctgt gagcaatcta tacttaccgt
      961 tgccgagtgg tacaataccg ctgtttggca ctcgattttg tttagttgtt atcgtccaac
     1021 tgtattcttc gattggtttt aatcctccac caaagccgtt acgtttattt attgctcgta
     1081 acattgacgg tgacgtgatt gtgtatttgt cgtctgcttg atccatgata aactcgctta
     1141 cttttctcat cggtttacgc tctaatgtat cgaagttgaa ccaatgacca tctagcatac
     1201 tgacaacaaa cacacgttca cgcttttgag gtataccaaa gtctctagcg tctagcactt
     1261 gataactgtt tgtgtaccct agtcgctcca tctcgacgaa atacttttga aaactatgaa
     1321 tcatatcttt cgctaataca cctttaacat tttcccaaac aactacttta ggcttccatt
     1381 tgcccatgtt ctctataatg cgtatggtct cccacattag tgacgaccgt gtcttatctt
     1441 cgtcgttacc acctagcctt ttgcctgctc tactaaagtc ctgacacggc gaaccatgaa
     1501 ctaaaatgtc aggctttaaa ttccaaccga cgaccgactg aggtttgtgt aggtggtcgt
     1561 ataaagcgtt ataagttcta acagactttt cgtcgatttc gacataatca atcgccttat
     1621 gtggataacc tagattcaac aaagcttttc taggcgcacc tataccaccg aatagttcca
     1681 aaattttaat catctaacct cacacctcaa aaaaacttaa ctgtttagat tcttcaaatg
     1741 ctttttgtaa cgtgttgcat aatcgataat tttatcgagc tccttaacca catcgtcttt
     1801 gtaacctaaa cgatcaacgt acttgcttat ttgtgatttg aatgcgcctc ttaattcttc
     1861 aggcgagtaa cgttcacacc agtaatcgat taaatcttta ttgctatcac cgtaatgtgc
     1921 aggtctgtca tgtgtagcga tttttgtgtt gctcggaatc ggataccact ccacatctgc
     1981 gttgatttca ccataagttc cattttcaaa aataacattc gcatattcat acgtttcatt
     2041 tacttttgtc acttcagctg ttccgaaaat agtttcgtaa acccacttct catcatctgt
     2101 atctttgaat tgttgtgaac caacttcgac actcacttta tcaccaattt tcaaatcttt
     2161 aatttccatt atttgcgtct ccttttcatg taaggcttcg tattaacaat ttcctcaatg
     2221 ctccagtagt ttttatatct actcagcgcg atgctaggcg tgataccttt gtgtatcatt
     2281 tttgcttttt gcgacctgtt caatccgata aagtcaatat ctttccacgt cacgaccacg
     2341 tcaccttgct ttttaaatag ttgtagtagt cgctaggatt taccgattgc gggtacttag
     2401 ttaaatgcga tttgtcctta cgactatcca taaagcgctt gtacgcttct ttggggtcta
     2461 taatagactc gagcttcaaa atcgctcttt tttcatcttc cacaattttt aaacgctttt
     2521 ttattggtgg ttttgtgatt gcttgttcac gcgaccaacc taaccgttta atacgattca
     2581 acgcacaccc tcttgtaata ccatttagtt ccataacttc gatttcttca gcgctaaatg
     2641 cttcggtcat actcactacc tcctaaaaat caagtaattc cgtcaaatct aactgcccta
     2701 attcttcaaa gctcaaaaga ttgaatgtac ttttgaattc ctcaatatca tcagtcgtac
     2761 gattgatgtg cgctagttgt gtgtcgtcta atcctttgat gtgatattgt ccatcaatat
     2821 ttctgctaac gactaccact ggctctttgt tactgttgta caagttatac atcttattca
     2881 tcgttattca gctcctcaat gattagcact gtccgtgcta cactatccca ttttttgaat
     2941 gttctgattt ctgatatcaa tacatcgtcc gtccacagct tgttattgcc tgcatcaagt
     3001 attgttttta ataagttgtc aatgtcaggt ttaatactat gcggctgtcc aatatgcgat
     3061 tccttcttgt gtttcggcca cgacttacta ggcttgaagt aaaactcaat cgtgagccgt
     3121 atcggcttat ctatcatcaa atccggtaac tgttccgcta caaacttttt atgctttaca
     3181 tacggtgcag gcatgtaagt atgcccgcct ccgctaaacc taggacgtga tgacccttta
     3241 ggattaccaa gatttttgtc gttctccaga taaaagattt ctattcttgt ttccgtcact
     3301 taatccacct ctaatatcgt catatattgc cgtgtgttgc gttcaactct cttttgaata
     3361 aataggtcat acaacttttt atcgtcgccc tgtgcccact caagcatttt ctgagcatac
     3421 acatctgaac actcaagatt ttctttcaaa aactcttttg taattgatgt gattaccatg
     3481 cgtcacgctc cctgtaatca tcgccgatta cttttactgt tctagcatta tgtttcattc
     3541 gtgaattgat acgctgccag ttcgtatttt gatttaattc tttgttacta aaattggttg
     3601 taaatatgtt gttcttacca acacgattat ccacaatgct aaataactta ttaagcgtat
     3661 gttctgtgtt ctctacgccc atatcgtcca atacgagcaa atcaatgcta cttaaaagac
     3721 ttacaagctc gtcagttgtt tcaaccgcat ttttgttgta ggtcgctttg atgcgatcca
     3781 ttaacattgg tatatgcata aatgcagctg taaacccttg tttttttact gccttagcta
     3841 ttgcataagc taagtggctt tttccggtac cgtatgagcc ctgtaatatt aatgacttag
     3901 gtttatctgt cgagaatgtt ttaacgtatt ctatcgctgt ctgtttagct tgtacttgat
     3961 tctcattttg tggtttgtaa ttattcacag tagctgtaga tagagacgga ttgacgttag
     4021 attgattaaa aatataattc aattttcttt gttcatttcg tttgcgttct tcatatgctt
     4081 gtttctgtat ttcacattcg caaccgtctt tatactcgta accattagca aatttaaacc
     4141 aatcatattt acgcccgcat ttttcacacg ttaagtcata ttcagattcg acaggttgat
     4201 acttccctaa gctcttacta gatatattgc taagcattct tcgcatctaa tcacctcaat
     4261 cccaatagct ttcgtcgtac ttcattcttt cgagtttatc catgccactt tcttgttttt
     4321 ctatcgtaaa gtcattcaaa tagctttctt gacttaaaaa tgttttaggg tatttttgat
     4381 attgcttatt agtgatggtt tttaggtatt ctctagtgcc attcatgata gtctcgaacc
     4441 catgcttttt aagcgcactt ttaaataagc taaacgcttt ttttctatcc aacttcttat
     4501 cataaagcgt ccaccactct tcaaaatgcg ctagcgtaac gtcagttgcg ctattactat
     4561 tactacttgt attatttaat cttgtaatat taatacttgt attattctct ttaacatttg
     4621 tgataatagg ggtattaaca gaattgttaa taggggtatt atcatttgtg ttaataggta
     4681 ttatcatttg tgttaagggg tatatctttc tttgtttgat ttcatttcct tctctaatga
     4741 tttcaacttg taaatatccg cattctttta aattagctat acgacgtgac actgtaactt
     4801 tcgtaacttc atatagtttc gcaaagtaac cattactcgc tgtacagtat ccatatttgt
     4861 tacttaatga tgtgatttct gcaaacaata acttttcact gtccgtaagg cggttgtcat
     4921 atctaacgtt tgctgtaatt atcgaatagt aactcggttg atcactcatg tttttctcct
     4981 ttcaacatct tgttgagtcg gtcatctacc tttatccaac tgtcttcaag atggtatttt
     5041 ttatcaaacg actttacacc aattgcgtgc tgctcgttgt gatgttctct acataaagct
     5101 aaaacgtgtt tatcgtagtg attcatctta tttcgattaa accctcttcc aaccgcctcg
     5161 taatgtgcta aatccgaatg aggtttgcca cagatgacgc agttacggtt gactgtagac
     5221 cagtacaaga atgacttatc attttttaac aagtcacttg tcttgtggtt cagcggtatg
     5281 tcgttataaa agacccaatc gagtatggct tcaataactt gtttagcttg tgtcctgctg
     5341 caattgctga gtgatagcct gtcgtaaccc tcgacaaacg acacatagtc cataaacata
     5401 taacgcatgt actcacgtgg ttgacctgta tgttgttcaa tatcgttgca taaggcaaat
     5461 atcttacgcc gttgtttgtc tgtaatttgg aacggatcta cgacgtttac atcaacttcc
     5521 acatcaaacc cgttatctag cagcaacgtt tccttatcac ctaattcgac acccgagatg
     5581 acgacagttg ttgtgccgtc atcttgagtg atgtagctag taattaaagg catctaatca
     5641 cctaccaaac gtcatctaca tgaccacgca attcgtccat tacttcttct gcttgtggtt
     5701 tgatgaattt tatatatgag ctcaattcat ctttgctcat atgcgttata cttgtgtcat
     5761 cttgaatata cgactgcaaa tattgagcat attcaatttg tttttcagta ggtttgtcaa
     5821 aagggtaaat cttcatcgtc gatgtcaatc ggattatttg cgttagtgaa tggattatct
     5881 tgtgcaggcg cttgacctct ttgttgttgt ggttggttgt tagattgatt gttattttta
     5941 gactctaaaa attgcacgct atcacaaatc acttctgtaa cgaatatacg tcgtccttct
     6001 tggttttcgt aactgcgtga ttgtaagcga ccatcaacgc cagctagatt tcctttattt
     6061 agatagttgt tcacattttc tgcttgctta cgaaaaacaa tacagttgat aaagtctgct
     6121 tgttgttctc cgtttttatt tttgtaattg cggttaactg ccaatgtaaa tgttgctacc
     6181 tcaacgcctg attgcgttgt tctgaattcc gggtcttttg ttaatcgacc taccaatacg
     6241 actctgttga gcattattca ttctcctttg cttgtttagt ccaattgtct aactttttga
     6301 tgagtgcact aatttgtgca ttagttaacg cttgaatatc gctaatacct aattgatttt
     6361 gaacgtcatc aattgttact tgcttgccta atgattgcat caattcgcta aatttgagca
     6421 tctcttcttt caatgtccca atcgcttttg catcaggctt tgtatattgc tccttctttt
     6481 gtttagcatc tgcatcgtct tcgtccgtag ggatattgaa gaatttcatt aagaaataac
     6541 gttcagaata agttaatgca gtccctagcg ctttggcagg gtcatcttgt tgaccgattg
     6601 cgaaaaacgg gagctctaat tgttcttccg gtttatccgc attgatccat gtataaatca
     6661 atttaacttt tactgtatat tcggttgtgg ttacttgttt tttgtactta ggactgtatc
     6721 ttgttacgtc ctcgactgaa tatgtctctt ctaatgtttt tggtacaagc aatagattat
     6781 gttcaatcat tttcgaacga atacgatgca acacttgtga accgctaacg taagtgtagt
     6841 tgtatccttt tgtatctttg gtaaaaccat caatatttgc tttaacatca gctatttttt
     6901 ggtataaatt gagctcactc atctatctca ccctcaaact tctagtctgt tttacttcga
     6961 cgcctttgat gtcagcacca ttcttgatgt ctttgagcaa gtcttttttg tttaatttcg
     7021 gtgcttgcga tacccagtat tctttcggta tcaatgattc ttcggtaacg tctaagctcg
     7081 gcggattgtt tgcgatgctg taactattca atgctgtttt gaatttctct ttacctgttg
     7141 attccattgc gaactgcaat gattctttaa gcctgctgat tccgttttgg tttgatgtct
     7201 tacgttgacg taggcgtttg atttcttcat caatagcgac gttgtcagct tccagtgttt
     7261 tgattacagc tacatatccg tccgctttct cctctaaagc gtcattgatg ctttgtagtg
     7321 tctcgattag cacagtctca tcaccttgtt cagctatgag gtcataaact ttttgatacg
     7381 cgtctgtcaa attaaatagt gtcgtcaacg attaacacct cctcttcatc agtagttttt
     7441 gatgtgttga aatgaatcaa tggaatttta ttattctctt cttctaaatc cttaatttga
     7501 gctttaagct cgatattttc atcttctaaa cgttgggctt catttttgta aaccgctctt
     7561 tctgcgatga gttgatcgta tctttctaat gtgattaaca ttttttcgtt ttccatgatg
     7621 tttcctccta gtttttaatg agttgtgcca tgattttgtc taagtcgtct gtttggtact
     7681 cgataaaatc gtaaatagct gcgttaataa cttcttgtgc gatgtctaca tctgagacat
     7741 cgtatacttt cgtttctgcg atgattttgt atgtcatgtc agtgatttca atcaagatgt
     7801 aatcatcttg tctagtaacg tgcttacgga atttgaagcc ttctacttcg atgattcctg
     7861 aaaattcttc tccgtttgga aaatacattt gataatcctc ctgtttcgtt gtatattgag
     7921 gatagatatt tatgcgaaat tactatcctc gactgtttgc taactgccat tagcactcag
     7981 tcttttttaa tgtgtcgtac acatacttag ttaagttata cgtcaccgct tctgctagta
     8041 ttacgacaaa cagaatagta gtgaagtaca tgcctgcaaa agcgagtatt gtcgttagta
     8101 cgattgctac tgctacagtg ttgaaccatg cgatcaaata ttgcatgcct gttcctccaa
     8161 ttctttaaca gcttcatctg acaaatcgtt atacggaaat ttttcgcgtg ctaattgaat
     8221 tggaatttta cctctaatag caacaaaccc ctcttcttcc attttttcat ttaaagctct
     8281 agcgatagat gtagccttac ttttcgatac accagttaaa acttgtaatt cttttatggt
     8341 caaaaattgc tttttcattt gcccccctcc tcaaagtcca tttcaagttg tctaattacg
     8401 tacattgttg attgtgatgg aaaccaattt gtaatgatgt ccattacatc gttgaaatgt
     8461 ttctgtctta actgcgttct cgttttaatt ccagccattg tattaacatc attattaatg
     8521 ttttggtaaa gtggtttatt aacctctttg ttgttaggta agccgtggat ttgtctaatg
     8581 taagcaacac gttgatgtat agttttagta accaaaccat attcacctgc atcaagcttt
     8641 tggttatctt ttaaatcgat aacctcggct ttcacacttt cgatttcctc tttggtttgt
     8701 ttagtagctt cgaacattaa ttccagcgct tgcataggat cacttgggac ttgatatgtt
     8761 cctgtttttc taattgccgg caaaacttcc gaagttaccc aacgtttaaa tcttttagct
     8821 gaatctaatt ttgacgaaaa gattaaactg tataatcctg attcgttgat aagggtttga
     8881 tttcgtcttt gacctgccgt aacaatttgt gacgttagct tatcttcttc gtctacatga
     8941 tctgatagag cttttcttga gtttgaatag cctaaaatgt ccgatacatc ttttcctaca
     9001 aaatatggtt cgtcatctac tgtcaatgtt cttactggta gttcgtcaaa attgaatgtt
     9061 tgtaaattct gcatttttaa atactccttt ttgttaaagt gttgtgtata atgaatctaa
     9121 cgctactgcg ttggattggg ggtgttacat aatgaaacag tttattgatc cagataagtt
     9181 tgcatccgct tttgtttcta acccaaatgt ttcaaaagta gaaaacgcag attcttctgt
     9241 tgaacactat tttgatttgt atataaaagc ttttgagcga gcagttgaat acaatcaaac
     9301 tattgtcgat gaacaaaaga agaaaaaatc tggacaaaaa tctaacggtc ttaaaatcag
     9361 aaatgattta agaatttaat cttcgtaata agcgttgagc atgcgagcta gtaccttgca
     9421 gtcctcttcg cttatatcgt tttcaacgaa aaaaagttga atttttaaaa ataatactgg
     9481 aatacgaata ccttcaaatt catctttagt tagagacctc aaatctatct ttttcttttc
     9541 cataattgtc cctccttgat tacttatcat ttgaattaat tgctattgtg ataattgata
     9601 gaattattgc taaaatgctt acgattaaag aaaacatgtt aatcctcctt acagtaattt
     9661 aaattcaaca ccatctattt gaatgaatag attatctaca tcaggatttt tctttttgaa
     9721 aaattcaatt ctagctttgt atccacttac aacagattcg tttaagttgt ttacgctcca
     9781 aagtcgtcta ttaccttctt cgtcatagta gtaatagatg acttttttgt tttgttcctg
     9841 catttcgttg tcctcttttc gtgtataatg ttgttatcaa cctaaggagg tgaataacaa
     9901 tgaatagcta tatcatttcg tatgacttga atgaccataa ggattaccct aaattgataa
     9961 gtagaataaa ggattatcct aatgctgaaa gaatcaataa atctgtttgg tttgttaact
    10021 cagtattcag tgcgaaagaa attagagacg aactgaaact atttgttgat aatgatgaca
    10081 gcctgtttgt agctaagttg actggtgaag ctgcatggag caatgtcata tgcgattcta
    10141 agcatttgaa agattatctc tagtttttat ttcacgccct tcttttctga ggggcttatt
    10201 ttaatttctg taaatctatc tacttttttt attaattcgt aaacttcgct catactgttt
    10261 gcatatatta cgtatccatt gcattcattt tcttctacgt aaattctata gttagcagtt
    10321 tgttccatgg tatcctcctt aagctttttg ttctttttcg ggaacgttgt tggtaaaaaa
    10381 aatatcaaga ttgttcgttt catatcccaa tattttagcc attttgataa attcattagc
    10441 tccaatatcc accaaaccat tttccctctt tgcatatggc gttcttgttt tccatcccat
    10501 taaattagcc atttcatctt gtgtgattcc acaagcaatt ctttcggctc gcaatctttt
    10561 tagatcaagt accattttgt cacctccttc gttctctttt gagaactgtt tataccttaa
    10621 catccatcgt tctcacatgt caacattttt tactctaaaa aaatcataaa gtttttttct
    10681 tctgatatat tgtattcatt tgggaacgat gttataatct aattgttcac aaataagaac
    10741 aaatatttta tacacaggag atacttaaaa tgagaagcaa tgatgaaata atcacaatta
    10801 taaaatcggc aatgaaggaa caaaatttat cgcttagtga attagctcgt cgtgccggaa
    10861 ttgcaaaatc tgcagtatca cgttatttaa atctaactag agaattccct ttaaatcggg
    10921 cggaagattt tgcaaaagct cttagtatca gtacagaata tttacttgga tttgataaca
    10981 gtggacaatc acaacaacaa gacaatcttg ccgctcattt agatggcgat ttttcagaag
    11041 atgaactcgc taaaattaaa gaatttgcgg aaatggtgag gaaatcacgc gataaataaa
    11101 caaagggtga tatgtttgag caagtatgaa gaattattaa tacaacacga ttacatcgac
    11161 attgaagata aatataatct tccaggaaat tttaaaggat tttatgacaa cgatgtcata
    11221 cttgtcgata gtaagcttaa tacttatcaa aaacatgaaa ttttagcgga agaaatagca
    11281 cactataaaa tatcggctgg taacatctta gaccaatcaa acatgcttaa tcgaaaattt
    11341 gaattaaaag caagacgcct tgcaaacgaa tctgtaataa gtttgcaggg tctaattaac
    11401 gcctttaatt atggtgtgca aaatatttat gatttagcgt tatattttga agtcactaaa
    11461 gattttgtgc tagacactat acagcactat aaacaaaaat acggtttaag gactagatat
    11521 ggta
//
LOCUS       DANHOL010000074        11479 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.074, whole genome shotgun sequence.
ACCESSION   DANHOL010000074 DANHOL010000000
VERSION     DANHOL010000074.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 11479)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11479)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11479
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.074"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            32..766
                     /gene="pxpB"
                     /locus_tag="PTC08_001456"
     CDS             32..766
                     /gene="pxpB"
                     /locus_tag="PTC08_001456"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002476870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpB"
                     /protein_id="HDK5682965.1"
                     /translation="MYFRQISEQSFIIYFKAEISESVYEHVNAVVEHIQKMNHPHIHE
                     IVPSYRAILAYFDGIQTDFETLIQALQLDTLDMQQTKVNTVQKRIVNIPVLYGGKWGP
                     DIEIVADHNHLTVDEVIQYHTENHYLVYMIGFMPGFPFLGGLSPRLHTPRKEEPRIKI
                     DAGSVGIANNQTGLYPSDSPGGWQIIGRTPIDVFNPNREPKILYQPGDRIKFYSINEE
                     QFLHIQKYVRKNQLDYDEWVMIEDGH"
     gene            756..1781
                     /locus_tag="PTC08_001457"
     CDS             756..1781
                     /locus_tag="PTC08_001457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin-dependent carboxyltransferase family
                     protein"
                     /protein_id="HDK5682966.1"
                     /translation="MAIKIIKPGLFTTVQDKGRSGHQFEGYSPAGVMDRPSYEILNTL
                     LETEGQPALEITMIGPTIKFLDQNLFAMTGAPFSATLNGQPVSHQTVIKVEKNDVLEI
                     GHVIHGMRGYIGFAKPLDIPLFEGSYATHTRTGIGGFKGRALKVNDIIPTQPSFLDYQ
                     LIGRSSDFSSFTKARQLPIGLMDGPQLESFTRRTIKELEQLEFTISENSDRMGYRLKG
                     PSIQPFTDADIISEPVALGSVQVPKDGHPIILLNDRQTVGGYTKIGTVIDSDIVDIVQ
                     KQPGDKVKFEWMTFNEANEILARKNRKLEEAKAQIRQRPQRLLHNIRPTQQKIKKVLK
                     GDSIPWI"
     gene            1772..2218
                     /locus_tag="PTC08_001458"
     CDS             1772..2218
                     /locus_tag="PTC08_001458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein subunit"
                     /protein_id="HDK5682967.1"
                     /translation="MDLKQIEQTLNLLKQYGAKHFKYRDDEMELELDLSSIQQTEAPV
                     DPPQSTQRSNQHVEQTQQTDESAEDNTKVIRSQMIGTFYLQDEKELTKPAVKVGDKVN
                     KGDIIGYIEAMKVMNEVTADESGEVQEVLVGHGENIEFNQVILTLK"
     gene            2232..3602
                     /locus_tag="PTC08_001459"
     CDS             2232..3602
                     /locus_tag="PTC08_001459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HDK5682968.1"
                     /translation="MFRVLVANRGEIAVRIIRALRELKMESVAIYAVGDENSLHVKLA
                     DQAVCIGQANPLDSYLNIRKILAAAEITKANAIHPGYGFLSESPVFAEKVENEGLYFI
                     GPTKKTMQRMGDKITARQTVDKAGVPIIPGSKSSVESVDEIKALAEEIGYPLVIKAAS
                     GGGGKGIRIVKEESQLERAFKEAKSEGNKYFNDDRVYVEAFIPVAKHVEVQVLGDGQS
                     RYIHLGERDCSVQRKNQKLIEESPCSALTEEKREKICNDAVKVAKAAQYRSAGTIEFL
                     VTEDAYYFIEMNARIQVEHTVTEMRTDIDLVREQLRIMQEGTLSLTQDDVHFYGHVIE
                     ARINAEDPQKAFRPTPGTVQRLHLPQGFNVRVDSLLYSGYTVSSYYDSLVAKVIVKGE
                     NRAHAIEKLKVTLDELVIDGFTTTADFLYAVLSYPPYYEGDARDVDIKFLDRHRIFKE
                     GNEDES"
     gene            3592..4350
                     /gene="pxpA"
                     /locus_tag="PTC08_001460"
     CDS             3592..4350
                     /gene="pxpA"
                     /locus_tag="PTC08_001460"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpA"
                     /protein_id="HDK5682969.1"
                     /translation="MKVDLNCDLGESFGNYQIGNDREVLPLITSANVACGFHAGDENV
                     MAETVRRAKENGVRVGAHPGFPDLQGFGRRNMDMSLTEIYNMVVYQVGALKMFCDING
                     VVLNHVKPHGALYQMAVRDETIARTIASAVYDIDPNLYLVGLSKSLLIDAGKAQGLKV
                     ASEVFADRRYESDGQLVSRKKEGATIEESEEAIAQVVQMVTEGTVKAISGEVIEIEAD
                     TICVHGDGAHALEFVKEIRSRLSEVNVDIVTLGG"
     gene            4354..5592
                     /locus_tag="PTC08_001461"
     CDS             4354..5592
                     /locus_tag="PTC08_001461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divalent metal cation transporter"
                     /protein_id="HDK5682970.1"
                     /translation="MKKQSNQIKKTGEFVFTKAHRRLLLGSVFLMATSAIGPAFLTQT
                     AVFTEQFLASFAFAILLSIIIDIGAQINIWRVLVVTGYRGQEIANEVVKGLGTFISLL
                     IALGGLAFNIGNIAGAGLGLNAIFGLDVRVGAAITAVIAILVFISKNGQKIMDVITMI
                     LGVLMILIVAYVMIQSNPPYVEAAQRMVLPENPSALVLPIITLVGGTVGGYITFAGAH
                     RILDAGIKGKDYLPFVNHSAISAILTTGVMRSLLFLAVLGVVVTGVALNPENPPASVF
                     EHAIGPIGKNIFGIVLFAAAMSSVIGSAYTSTTFIKTMHNKLRTYDNYVVVTFIVVST
                     LIFLFIGRPVKLLIVAGALNGLILPIILGTVLIASKNKRIVGDYQHPTWMLLFGIVAV
                     IVTIFTGFFSLQGLAALWSQ"
     gene            5842..6528
                     /locus_tag="PTC08_001462"
     CDS             5842..6528
                     /locus_tag="PTC08_001462"
                     /EC_number="3.2.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011302980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-methylthioadenosine/adenosylhomocysteine
                     nucleosidase"
                     /protein_id="HDK5682971.1"
                     /translation="MIGIIGAMEEEVAILKSQMDAVEEIKIAHAIFYRGTLNDKDIIL
                     TQSGIGKVNATISTSLLIDRFQPQCIINTGSAGGLQPGLALGDVVISRQVAYHDADAR
                     AFGYDMGQIPGMPTYFEADTSLFEKVDNVLKSLNQNGREGLIVSGDSFIGTNEQRQAI
                     LEYFPNALAVEMEATAIAQTCYQFNVPFIVTRAISDLADGEAGMTFEAFLKVAAKSSS
                     QMVNELVKVL"
     gene            6601..7128
                     /locus_tag="PTC08_001463"
     CDS             6601..7128
                     /locus_tag="PTC08_001463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqeG family HAD IIIA-type phosphatase"
                     /protein_id="HDK5682972.1"
                     /translation="MGIIKQLFLPNQYVNSIYEIDFDKLKQLNIKGIITDLDNTLVGW
                     DEAQPTPKVENWFKTIDEQGFKVTVVSNNNEQRVKSFCQNLKVDYIFKAQKPRGKALR
                     RATEQMGMQKDEVVVIGDQMLTDVFGGNRHGLYTIMVVPVKNSDGFITKFNRLVERRL
                     LKHFKRKGYIKWEES"
     gene            7129..8229
                     /gene="yqeH"
                     /locus_tag="PTC08_001464"
     CDS             7129..8229
                     /gene="yqeH"
                     /locus_tag="PTC08_001464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001280135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase YqeH"
                     /protein_id="HDK5682973.1"
                     /translation="MTETLKCIGCGATLQSDDPQKPGYVPKASLEKEDVICRRCFRLK
                     NYNEVQDVGMESDDFLKLLNGLSDKPGIVVNLVDVFDFEGSFIHAVKRIVGNKKIILV
                     ANKIDLLPKQINKRRVSEWLRRLAKEYGLYPEDVCLISAYKGIGIDGLLQTIEKHRNG
                     QDVYIVGTTNVGKSTLINKLIEQTVGEKNVVTTSRIPGTTLDMIDIPIDDNHYMYDTP
                     GIIQEHQMTHYVSTKALNTIMPKKEIKQRVYQLNEAQSLFIGGLARVDYLKGGKRPLV
                     CYFSNELNIHRTKLEKADELWRKQIGTLLSPPSPKDRFDFEQLKTVRLTTENEKKDIM
                     ISGLGFVTVDAGAELQVIVPQNVEVTLRPSIM"
     gene            8245..9057
                     /gene="aroE"
                     /locus_tag="PTC08_001465"
     CDS             8245..9057
                     /gene="aroE"
                     /locus_tag="PTC08_001465"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HDK5682974.1"
                     /translation="MKFAVIGHPIDHSLSPLMHHANFKSLNLDYDYEALNIPPTHFEH
                     IRDIISEKELDGFNVTIPHKERIINYLDDMSDEARAIGAVNTVKVENGKWMGYNTDGT
                     GFVKGLQVKYGDLTGAHILILGAGGASKGIAYALSQVSDKRIAVANRTMSRFNDWQLQ
                     IQPHSLEDVASIAHQFDIIINTTSLGMHQSQDSVMSFAQLKADVLVCDIIYIPFQTTF
                     LKEAAEKEFSTYNGLDMFIYQGAESFKIWTGLESDITTMRNAVLNKLNPTTT"
     gene            9068..9361
                     /gene="yhbY"
                     /locus_tag="PTC08_001466"
     CDS             9068..9361
                     /gene="yhbY"
                     /locus_tag="PTC08_001466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome assembly RNA-binding protein YhbY"
                     /protein_id="HDK5682975.1"
                     /translation="MALTGKQKRFLRSKAHHVDPTFQIGKSGINENMVEQLKETLENR
                     ELIKIHILQNNMDDKSELAQNISQATDSELVQLIGSMIVLYKESRENKQIELP"
     gene            9364..9945
                     /gene="nadD"
                     /locus_tag="PTC08_001467"
     CDS             9364..9945
                     /gene="nadD"
                     /locus_tag="PTC08_001467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate (nicotinamide) nucleotide
                     adenylyltransferase"
                     /protein_id="HDK5682976.1"
                     /translation="MEKIVVYGGQFNPIHSGHEMVASEVNATIQPDHFYFMPSFMSPL
                     KKHDELIEVEHRIQMVKLVIENLGFGTLRLDEIERKGQSYTYDTLLNIRQESPDAKLF
                     FVIGTDQYEQLDRWYEIDALKSFVTFVVVNRGAVIQSDDDAIMMVNIPEMAISSTEIR
                     QRRSQQQTIHMWVPLNVEHYILKEGLYGSNICD"
     gene            9923..10507
                     /gene="yqeK"
                     /locus_tag="PTC08_001468"
     CDS             9923..10507
                     /gene="yqeK"
                     /locus_tag="PTC08_001468"
                     /EC_number="3.6.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bis(5'-nucleosyl)-tetraphosphatase (symmetrical)
                     YqeK"
                     /protein_id="HDK5682977.1"
                     /translation="MDRTFAIELVEQKLPKKRFEHSLRVAETAVKLAEIYEGDKEKAE
                     LAGILHDFCKYDDLSFLYQQVTRYDLGHDLLSYGSEILHGPVCAAIMKHQYGIQDDEI
                     LLAIYNHTTGRKHMTKTEKLVFIADYIEPGRNTPKVEEIRDLVYNGGGLDKTIYEISK
                     RTVLYLVKKDVSVYQSTIDCLNYYNFNDSKIKDD"
     gene            10508..10864
                     /gene="rsfS"
                     /locus_tag="PTC08_001469"
     CDS             10508..10864
                     /gene="rsfS"
                     /locus_tag="PTC08_001469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome silencing factor"
                     /protein_id="HDK5682978.1"
                     /translation="MNAKDLLMLTVEAADAKKAEEIISLNMSGVSDLTDYFVVCHGNN
                     ERQVQAIARAVKESAESHQIEVKRMEGFNEARWILVDLTDVVVHVFHKDERSYYNLEK
                     LYQDVEMLGYKEVINS"
     gene            10864..>11479
                     /locus_tag="PTC08_001470"
     CDS             10864..>11479
                     /locus_tag="PTC08_001470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDK5682979.1"
                     /translation="MQYENLSAFYDRLTDDQPYDLWLDLIQQTLQQQKVSRVLDIGCG
                     TGTLTQHFTQFADEVMGMDLSVEMLVLAKQKSSQVQWIEGDMSDFNLNTDFDLITILC
                     DSLNYLADETAVVATFEHVYQHLNVDGYFIFDVHTTHKMTHQFNGQVYLDDREDLTLV
                     WQTEPAEAPYSVWHDLTFFILNEAQTYVRQDESQYQRTFEKDQYI"
BASE COUNT         3782 a         1854 c         2452 g         3391 t
ORIGIN      
        1 ttgtaagggc tttccgaaaa gggggatgta catgtatttt cgacaaatta gcgagcaatc
       61 ttttataatc tacttcaaag cagaaattag tgaatcggtt tatgaacatg tcaatgctgt
      121 agtggaacat attcaaaaga tgaaccatcc gcacatacat gaaattgtac cttcttatcg
      181 tgcaattttg gcatatttcg atggcattca aacagatttc gaaacgttaa ttcaagcact
      241 acaacttgat acattggaca tgcaacaaac gaaggtaaat acggttcaaa agagaatcgt
      301 gaatattcca gttctctatg gtgggaaatg gggaccggat attgagattg tcgcggatca
      361 taaccattta acggttgatg aagtgataca atatcataca gaaaatcatt atcttgttta
      421 tatgattgga tttatgcctg gatttccatt tttaggtggt ttgagtcctc gtcttcatac
      481 gccgagaaaa gaagaaccaa gaattaaaat cgatgcaggc tcagttggga ttgcgaataa
      541 tcaaacaggt ttatatccat ccgattcacc aggaggttgg caaattatag ggcgtacacc
      601 gatagatgtt tttaatccga atcgggagcc taaaatttta tatcaacctg gtgacagaat
      661 taaattttat tccattaatg aagaacaatt tttacatatt caaaagtatg tgcgtaaaaa
      721 tcaattagac tatgatgaat gggtgatgat agaagatggc cattaaaata attaaacctg
      781 gattgtttac gacagttcaa gacaaaggac gttcaggtca tcagtttgaa ggttattctc
      841 ctgctggtgt aatggatcgc ccgagctatg agattttaaa cactttatta gaaacagagg
      901 gacaacccgc attagaaatt acgatgattg gcccaacgat caaatttctc gatcaaaact
      961 tatttgcgat gactggtgca ccattttcag ccacgttgaa tgggcaacct gtctcacatc
     1021 aaactgttat caaggtcgaa aaaaatgatg ttttagaaat aggacatgtc attcatggga
     1081 tgcgtggtta tatcggattt gcgaaaccat tagatattcc actttttgaa ggtagctatg
     1141 cgacacatac acggacagga attggtggtt tcaaaggtcg tgcattgaaa gtcaatgaca
     1201 tcattcctac acaaccatca tttttagatt atcagctcat cggtcgttcg agtgattttt
     1261 caagttttac gaaagcgcga caattgccga ttggattaat ggatggacca cagctagaat
     1321 catttacacg acgtacgatt aaagaacttg agcagctcga attcactatt tcagaaaatt
     1381 cagatcgtat gggctacaga cttaaagggc catcgataca accttttaca gatgctgaca
     1441 tcatttctga gccagtcgca ttaggaagtg tccaagtgcc taaagatggt catccgatta
     1501 ttctacttaa tgaccggcag acagtagggg gctacactaa aattggcact gtgattgatt
     1561 ctgatattgt cgatattgtc caaaaacaac ctggtgataa ggtgaaattc gaatggatga
     1621 catttaacga agcgaatgaa attttagcac gaaaaaatag aaagttagaa gaggcaaaag
     1681 cacaaattcg tcaacggcct caacgtttac tgcacaacat tagacctaca caacaaaaaa
     1741 ttaaaaaggt tctaaaagga gatagtatac catggattta aaacaaattg agcaaacgtt
     1801 aaatttatta aaacaatacg gcgcgaagca ttttaaatat cgggatgacg agatggagct
     1861 agaattggat ttatcgtcca ttcaacaaac agaagcgcct gtagacccac cacaaagcac
     1921 gcagcggtca aaccaacacg tagaacaaac tcagcaaact gatgaatctg cagaagataa
     1981 tactaaagtg attcgttctc agatgattgg gacattttat ttacaagatg aaaaagaatt
     2041 aactaaacct gctgtaaaag taggcgataa agtcaataaa ggggatatta tcggctacat
     2101 tgaagcgatg aaagtgatga atgaagtaac agcagatgaa tcaggtgaag ttcaagaagt
     2161 gttggttggt catggcgaaa atattgaatt taatcaagtt attttaacat tgaagtaaag
     2221 ggggggatta catgtttcga gtattagttg caaacagagg tgaaattgcg gttcgtatta
     2281 tacgtgcgtt aagagagctg aaaatggagt ctgtcgctat ttatgccgtg ggtgatgaaa
     2341 atagtctaca tgttaaatta gcagatcagg cagtttgtat cggtcaagcg aaccctttag
     2401 acagttattt aaatatacgt aaaatattag ctgctgctga aattacaaaa gcaaacgcca
     2461 ttcaccccgg ttatggcttt ttatctgaaa gtcctgtgtt tgctgaaaag gtagaaaatg
     2521 aagggctcta ctttatcgga ccaacgaaaa aaacgatgca acgaatgggc gataagatta
     2581 ctgcacgtca aacggttgat aaagcaggtg tgccgattat acctggctct aaatcgtcag
     2641 tcgaatccgt tgatgaaatt aaagcacttg ctgaggaaat tggttatcca cttgtcatta
     2701 aagcagcgag tggtggcggt ggaaaaggga ttcgtatcgt caaagaagag tcacaacttg
     2761 aacgcgcatt taaagaggcg aaaagcgaag gcaacaaata tttcaatgat gaccgcgttt
     2821 atgttgaagc atttatacct gttgcgaaac atgttgaggt gcaagttctt ggagatgggc
     2881 aatcacgata tattcattta ggggaacgtg actgttcagt gcagcgtaaa aaccaaaaac
     2941 tgattgaaga gtcaccatgt agtgcattaa ctgaagaaaa acgtgagaaa atttgtaatg
     3001 atgctgtaaa agtcgcaaaa gcagcacaat atcgcagtgc gggtacgatt gaatttctcg
     3061 tcacggaaga tgcatattat tttattgaaa tgaatgcacg tattcaagtt gagcatacag
     3121 tgacggaaat gcgtacagat atcgacttag tacgtgaaca actacgcatt atgcaagagg
     3181 gcacactttc acttacacaa gacgatgttc atttttatgg gcatgtcatt gaagcgagaa
     3241 ttaatgcaga agatccacaa aaagcctttc gtccgacacc tggcacagtt caaaggttgc
     3301 atttacccca aggattcaat gtacgtgttg actctttact ttatagtgga tatactgttt
     3361 cttcatatta tgattcactc gtcgcaaaag tgattgttaa aggtgaaaat cgtgcgcatg
     3421 cgattgaaaa attaaaagtc acattggatg aactggtgat tgatggattt acaacgacag
     3481 cagatttctt atatgcagta ttatcttatc caccatatta tgaaggcgat gcacgcgatg
     3541 tggacattaa attcttagat cgtcatcgta tttttaagga ggggaatgaa gatgaaagtt
     3601 gatttaaact gtgatttagg agaaagtttt ggtaattatc aaatcggcaa tgaccgagaa
     3661 gttttaccat tgattacctc tgccaatgtt gcatgtggtt ttcatgcggg tgatgaaaat
     3721 gtgatggctg aaactgtacg acgtgctaaa gaaaacggcg tgcgtgtagg tgcccacccc
     3781 ggatttccag atttacaagg atttggccga cgcaatatgg atatgtcatt aactgagatt
     3841 tataacatgg tcgtatatca agtgggcgct ttaaaaatgt tttgtgatat taatggtgtt
     3901 gtgcttaatc atgtcaaacc gcatggcgca ctttatcaaa tggctgtcag agatgaaacc
     3961 attgcacgta cgattgcttc agcagtttat gatattgatc cgaatctgta tttagtcgga
     4021 ttatcaaaat cattactcat tgatgccggt aaagcacaag gtcttaaagt cgcgtctgaa
     4081 gtatttgcag atcgtcgtta cgaaagtgat ggacaattag tgagccgtaa aaaagaaggc
     4141 gcaacgattg aagagagtga agaagccatt gcgcaagtgg tacaaatggt aacggaaggc
     4201 acagttaaag cgatttcagg tgaagtgatt gaaattgaag cggatacaat ttgcgttcat
     4261 ggtgacgggg cacatgcact tgaattcgtt aaagaaattc gttcgcgttt atcagaggtg
     4321 aatgtcgata ttgtaacttt aggaggttaa gcgatgaaga aacagtccaa tcaaattaaa
     4381 aaaacaggtg aatttgtatt cactaaagcg catcgaaggt tgttactcgg ctctgtattt
     4441 ttaatggcca cttctgcaat tgggcctgca tttttaacac aaactgcagt gtttactgaa
     4501 caatttttag caagttttgc atttgcaatt ttattatcta tcattattga tattggggca
     4561 caaattaaca tttggcgtgt cctagttgta acgggttatc gtggccaaga aattgctaat
     4621 gaagttgtta aaggtttagg tacttttatt tctctcctta tcgcattagg gggattggct
     4681 tttaatattg gaaatattgc cggagctgga ctaggtttga acgccatctt tggtttagat
     4741 gttcgtgtag gtgccgcgat tactgcggtt attgcgattc tcgtttttat ttctaaaaat
     4801 ggccagaaaa tcatggatgt cattacgatg attctcggag tactcatgat tttaattgtt
     4861 gcttacgtta tgattcaatc caatccgcca tatgtagaag cagcacaacg catggtattg
     4921 ccagaaaatc cttcagcact tgttctaccc attatcacat tagtaggtgg aactgtaggt
     4981 ggctatatta catttgcagg tgcgcaccgt attcttgatg cagggattaa agggaaagac
     5041 tacttaccat ttgtgaatca ttcagctatt tcagcgattc taacaacagg tgtgatgcga
     5101 agtttactat ttttagccgt acttggtgtt gttgtcacag gtgtcgcttt aaatcctgaa
     5161 aacccaccag cttctgtctt tgaacatgct attgggccaa tcggtaaaaa tatttttggt
     5221 atcgtactgt ttgcggcggc gatgtcatct gttattggtt cagcgtatac gagtacgaca
     5281 tttattaaaa caatgcacaa caaattgaga acgtatgata attatgtcgt cgtgacattt
     5341 atcgttgtat cgacattgat tttcttattt atcggtcgac cggtgaaatt attaattgtt
     5401 gcaggcgcat taaacggttt gattcttcct attattttag gaactgtatt gattgcttcg
     5461 aaaaataaac gtattgttgg agattatcaa caccccactt ggatgttatt attcggtatt
     5521 gttgcagtta tcgttactat ctttaccggc ttcttctcgt tacaaggttt agctgcattg
     5581 tggagccaat aaaaattcaa tccgattaat gattaagggc taggacattc agttgtcttg
     5641 gccctcaatt tgttataaga ttgattattg aaatcgagta tgagtatgaa agaatagctt
     5701 tggatatcgt tgtttaatca tttgctttcg ttaaatgaca gcaacatctc aatgataaaa
     5761 ctgaacgcta atatataaat atgataaaat gacaacggta aacataaaat gaaacagcta
     5821 atggattgag gaggcatatg aatgatcgga atcatcggtg caatggaaga agaagtagca
     5881 attttaaaat ctcaaatgga tgcggtagaa gaaattaaaa tcgcacatgc cattttttat
     5941 agagggacat tgaacgacaa agatattatt ttaactcaaa gcggtatcgg taaggtgaat
     6001 gcaaccattt ctacaagtct actgattgat cgttttcaac cccaatgtat cattaacaca
     6061 ggatctgcag gaggattaca gcctggctta gcacttggcg atgtggtcat tagtcgacaa
     6121 gtcgcatatc acgatgctga tgcacgggcg ttcggctatg atatgggaca aatcccaggt
     6181 atgccaactt attttgaagc agatacgtca ttatttgaaa aagtagataa cgtcttaaaa
     6241 tctttaaatc aaaacggtag agagggccta atcgtttcag gtgatagctt tatcggcaca
     6301 aacgaacagc gtcaagctat tttggaatat tttcctaatg cattagctgt cgaaatggaa
     6361 gccactgcca ttgcgcaaac atgttaccag tttaatgtgc cttttatcgt gacacgagcg
     6421 atttctgatt tagctgacgg tgaagcggga atgacatttg aagctttcct taaagtagca
     6481 gcaaagtcat caagtcaaat ggtcaacgaa cttgtgaaag tgctctgaca aaacacacta
     6541 tgattgcaca taaatatgct ataatataac gaatgaagtc ttttaaagtg gaggatgaac
     6601 atgggtatca tcaagcaatt atttttacca aatcaatatg tgaattcgat ttatgaaatt
     6661 gattttgaca aactgaaaca attgaatatc aaagggatta tcacagattt ggataataca
     6721 ttggtcggct gggatgaagc gcaaccgaca cctaaagttg aaaattggtt taaaactata
     6781 gacgagcaag gatttaaagt gactgttgtt tctaataata atgaacaacg cgtgaaatcc
     6841 ttttgccaaa atttaaaagt ggattatatt tttaaagcgc aaaaacctag agggaaagca
     6901 ttgcgccgtg cgaccgaaca aatgggcatg caaaaggatg aagtggtagt gattggagac
     6961 caaatgttaa cagatgtatt tggtggtaat cgacacggcc tttatacaat tatggtcgta
     7021 ccggtgaaaa attcagatgg ttttatcaca aaatttaatc gtttagttga acgacgatta
     7081 ttaaagcatt ttaaaagaaa aggctatatt aaatgggagg aatcgtaatt gactgaaact
     7141 ttaaaatgta ttggttgtgg ggcaacacta caatctgacg acccacaaaa accgggttac
     7201 gttccaaaag caagtttaga aaaagaagat gtcatttgtc gtcgttgttt tagattgaaa
     7261 aattataatg aagtgcaaga tgtgggcatg gaaagtgacg actttttaaa attattaaac
     7321 ggcttatcag acaaaccggg tattgttgta aatttagtcg acgtatttga ctttgaaggt
     7381 tcttttattc atgcggtcaa gcgtattgtc ggcaataaaa agattatttt agttgctaat
     7441 aaaattgact tattgccgaa acaaatcaat aagcgtcgtg tttctgaatg gctaagacgt
     7501 ttagctaaag aatacggttt atatcctgaa gatgtatgtt taatttctgc atataaaggc
     7561 attggtattg atggtttatt acaaacaatt gaaaagcatc gtaatggcca agatgtctat
     7621 atcgtcggta caacgaacgt cggaaagtca acgttgatta acaagttgat tgaacaaaca
     7681 gtaggtgaaa aaaatgtcgt cacaacttcg cgtattccag gtacgacatt ggatatgatt
     7741 gatattccga ttgatgataa tcactatatg tatgatacgc cagggattat tcaagaacat
     7801 caaatgaccc attatgtgtc gacaaaggca ttaaatacga ttatgcctaa aaaagaaatt
     7861 aagcaacgtg tatatcaatt aaatgaagcg caatcgttat ttataggtgg tttagcgcgt
     7921 gtcgattatt taaaaggtgg taaacgtccg ctcgtttgtt atttttcaaa tgaattgaac
     7981 atccatcgca caaaattaga aaaagcagat gaattgtggc gcaaacaaat tggtacatta
     8041 ttatcaccac cgtccccgaa agatcgtttt gactttgaac agttaaaaac agttcgttta
     8101 acgacggaaa atgagaaaaa agacattatg atttcaggtt taggctttgt cactgtggac
     8161 gcaggtgcag aattacaagt gattgtacct caaaatgtcg aagtgacatt gagaccttca
     8221 attatgtaag gagtgtgaga ttcaatgaaa tttgcagtaa ttggacatcc gattgaccat
     8281 tcattgtctc cactgatgca tcatgcgaat tttaaaagtt taaacttaga ttacgactat
     8341 gaagcactta atattccacc aacacatttt gagcatattc gcgatattat tagtgaaaaa
     8401 gaacttgacg gttttaatgt gacgattccg cataaagagc gcattatcaa ctatttagat
     8461 gacatgtcgg atgaagcgcg agccattggt gcagtgaata cagttaaagt tgaaaacggg
     8521 aaatggatgg gctataacac ggacggtacc ggatttgtca aaggattaca ggtgaaatat
     8581 ggtgacttaa ctggtgcgca cattttaata ctcggtgcag ggggcgcaag taaaggtatt
     8641 gcttatgcgt tatctcaagt gtctgataaa agaatagccg ttgcaaatcg tacgatgtct
     8701 cgtttcaatg attggcaact tcaaattcaa ccgcactcac ttgaagatgt cgcatctatt
     8761 gcccatcaat ttgatattat tattaacacg acatctcttg ggatgcatca atctcaagac
     8821 agtgtcatgt cgtttgcaca gttaaaagct gatgtgcttg tatgtgatat tatttacatt
     8881 ccatttcaga cgacattttt aaaagaagcc gctgaaaaag aattttcgac ttataatgga
     8941 ttagatatgt ttatttatca aggtgctgaa agttttaaaa tatggacagg tttagagagt
     9001 gatattacga cgatgcgcaa cgcagtatta aataaattaa atccaacaac gacttaagga
     9061 ggccattatg gcattaacag gtaaacaaaa aagattttta agaagtaaag cacatcatgt
     9121 tgatcctact ttccaaatcg gtaagtctgg gattaacgaa aatatggtag agcaattaaa
     9181 agaaacactc gaaaatcgcg aattgattaa aattcatatt ttacaaaaca atatggatga
     9241 taaaagcgaa ttggcacaaa atattagtca agcaacggat agtgaattag tccaacttat
     9301 cggttcgatg attgtcctct ataaagaatc tcgagaaaat aaacaaatcg agttaccata
     9361 aatatggaaa aaatcgttgt ttatggtgga caattcaatc cgattcatag tggacatgaa
     9421 atggttgcaa gtgaagtgaa tgcaactatt caaccggatc acttttattt tatgcctagt
     9481 tttatgtcac cactgaaaaa gcatgatgaa ttaattgagg ttgaacatcg tattcaaatg
     9541 gttaagttgg tcatagaaaa tttggggttt ggaacgcttc gtttagatga aattgaacgt
     9601 aaaggccaaa gctacactta cgatactttg ttgaatatac gtcaagaatc accggatgca
     9661 aagttatttt ttgtcatcgg aacggaccaa tatgagcaac ttgatcggtg gtatgaaatt
     9721 gatgctctga aatcttttgt aacatttgtc gtcgtgaatc gtggtgctgt gattcaatca
     9781 gatgacgatg caatcatgat ggttaacata ccagagatgg cgatcagctc aactgaaatt
     9841 cgtcagagaa ggtctcaaca acaaacaatt catatgtggg tgccgctcaa tgtcgagcac
     9901 tacatattga aggaggggtt atatggatcg aacatttgcg attgaacttg tcgaacaaaa
     9961 gctaccgaaa aagagatttg aacattcttt acgcgtagct gaaacggcag tcaaattggc
    10021 agagatttat gagggagata aagaaaaagc cgaacttgca gggattttgc atgacttttg
    10081 taaatatgat gatttaagct ttttatacca gcaagtgaca cgatatgatc tcggccatga
    10141 tttattaagt tatggctcag agattttaca tggacctgta tgtgcagcaa taatgaagca
    10201 tcaatatggt atccaagatg acgaaatttt attagcaata tacaaccaca caactggccg
    10261 taagcacatg actaaaaccg aaaaattagt ctttattgct gactatattg aacctggtcg
    10321 aaatacgcca aaagtggaag aaattcgtga tttggtatac aatggcggtg ggttagataa
    10381 aacaatttat gaaatttcaa aaagaactgt cttgtacctc gtcaaaaaag atgttagcgt
    10441 gtaccaatcc actattgatt gtctgaacta ctataatttt aatgactcta aaataaagga
    10501 tgattaaatg aacgcaaaag atttattaat gttaacagtt gaagcagccg atgcaaaaaa
    10561 agcggaagaa attatttcgc ttaatatgag tggtgtttct gatctcactg attactttgt
    10621 tgtatgtcat gggaataacg aaagacaagt ccaagcgatt gctcgtgctg ttaaagaaag
    10681 tgctgagtca caccaaattg aagtgaagcg tatggaaggt tttaatgaag cgcgttggat
    10741 acttgtagat ttaacggatg ttgttgtaca cgtcttccat aaggacgaac gtagctatta
    10801 caaccttgaa aaattgtatc aagatgttga gatgttaggt tataaagagg ttattaactc
    10861 ataatgcaat atgaaaactt aagtgcattt tacgatcgac tcaccgatga tcaaccctat
    10921 gatctgtggc tcgatttgat acaacagaca cttcaacaac aaaaggtttc tcgtgtgctc
    10981 gacatcggtt gtggcacagg aactttgaca cagcatttta cgcaatttgc tgatgaagtc
    11041 atgggtatgg atttaagtgt tgaaatgtta gttttagcca aacaaaaatc aagtcaagtg
    11101 caatggattg aaggtgacat gtcggatttt aatctgaata ccgactttga cttaattaca
    11161 attctttgtg acagtttgaa ttatttagct gatgaaacgg ctgtggtggc aacgtttgaa
    11221 catgtttacc aacatttgaa tgtagatggc tacttcattt tcgacgtcca tacgacgcat
    11281 aaaatgacac atcagtttaa cggacaagtt tatcttgatg accgtgaaga tttaacatta
    11341 gtatggcaaa ctgaacctgc tgaagcacca tacagtgttt ggcatgattt aacattcttt
    11401 atattaaatg aagcacaaac ttacgtcaga caagatgaat cacaatatca gcgcactttt
    11461 gaaaaggatc agtatatcg
//
LOCUS       DANHOL010000075        11329 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.075, whole genome shotgun sequence.
ACCESSION   DANHOL010000075 DANHOL010000000
VERSION     DANHOL010000075.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 11329)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11329)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11329
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.075"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            96..1427
                     /locus_tag="PTC08_001471"
     CDS             96..1427
                     /locus_tag="PTC08_001471"
                     /EC_number="5.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HDK5682980.1"
                     /translation="MTHIQLDYQKALKFFGQHELDQQQDAVKAIHRTIHEGTGAGSDF
                     LGWVDLPVNYDKEEFSRIKEAAKQVQSHSDVLVVIGIGGSYLGARSAIEMLTPAFKKD
                     SEYPEIIFAGNHLSSSYLQSLIDYLADKDYSVNVISKSGTTTEPAVAFRIFKKLLEEK
                     YGKEEAVKRIFATTDQAKGALKQLATNEGYETFVVPDDVGGRFSVLTAVGLLPIAVAG
                     IDIDAMMGGAAKAREELSSDDLSSNIAYQYASIRNILYNKGYTTEMLINYEPSLQYFN
                     EWWKQLFGESEGKDLKGIYPSSANFTTDLHSLGQYVQEGRRFLIETVLKVENPEHDIT
                     IEEDAEDLDGLNYLAGKTVDEVNTKAFEGTLLAHTDGGVPNMVVKLPRLDAETYGYVV
                     YFFELAVAMSGYQLGVNPFNQPGVEAYKQNMFALLGKPGFEDKKKDLEARL"
     gene            1671..2189
                     /gene="lepB"
                     /locus_tag="PTC08_001472"
     CDS             1671..2189
                     /gene="lepB"
                     /locus_tag="PTC08_001472"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016424627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HDK5682981.1"
                     /translation="MKFLIKMTFALISALVVLAVLVLFVVIPYEVKHQNMDTTLQPHD
                     RLLVNKIAPRYNGIHHQDIVVYYAEGQYRVGRVIGEPGQSVEFQKGQLYLDHTPVTES
                     YVNQQDQQSWSLKSLPNSESDIIPPNSYLILNDRRDDDVDSRNFGLIRKSTIEGKLWI
                     RYYPFDRITTHF"
     gene            2208..2786
                     /gene="lepB"
                     /locus_tag="PTC08_001473"
     CDS             2208..2786
                     /gene="lepB"
                     /locus_tag="PTC08_001473"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HDK5682982.1"
                     /translation="MKKETMEWLLSIGLALLIVGLLYAFVIKPYNIKGDSMDPTLKDG
                     ERVIVNKIGKTLGHLDNGNVIVFHADETNDYVKRIIGKPGDHVVYKNDQLYLNGKKVD
                     EPYLDYNLKHKTYEQITGSFDSKDLPGSNGQKQIPKDKYLVLGDNREVSKDSRAFGLI
                     DKDQIVGKVAFRFWPLSEFKINFNPDHTDSQE"
     gene            3005..6469
                     /gene="addB"
                     /locus_tag="PTC08_001474"
     CDS             3005..6469
                     /gene="addB"
                     /locus_tag="PTC08_001474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helicase-exonuclease AddAB subunit AddB"
                     /protein_id="HDK5682983.1"
                     /translation="MFRTFLGRAGTGKSTQMLAEIKDKMKAQPIGHPIIIITPMQGTY
                     LYEQVFVKDTELLGSVRTEVLHFERLGHRIFQEVGGVHEKRLSSIAIEMMIYDILQEV
                     QTELKLYRSQVGYMGFSTKVREQIQDFEKYAVTPEMVSDMATDAHLEPRTRHKLHDIG
                     LIYEKLQARMSSEYITAEAMMDRLVTLIPQSKWLKQAEIYIDGFHNFSTQEYQLIEAL
                     VKHVKSVTLALTTNGDQDALSMFRKPSESLRHFEEMAHRVGQPLERLYFHTQHRFKAP
                     SLTVLEQQFDALQPESHHTADEGIRILEAPTTREEVNEVARTILRDVREKQYRYQDIA
                     ILYRDPSYVYLLDAILPQYDIPYNIDVKKSMTHHPIMEMLRALIEVLQTEWQFEPLMR
                     LLKTNVLTQVMPDSAYLVYLLENFAIERGIYGKRWLDPQYFELNQFRKMGIRPNDPLT
                     EEEAATFERVIDLKTKVFNQLLNFEEKLAQGSNAKAFATYFYEAMEGFELPNQLMTQR
                     DMLDEQGQHEAAEEIDQIWNGLIRVLDDVVTVFGDRDMTLTRFLEVLDVGLNELEFSM
                     IPQTLDQVTIGTMDLAKVDNKKHVYMIGMNDGVMPQAINGSGLISDNEKKAFETFAGV
                     QLSPTSDILQMDEAFVCYFAMTRATETVTFSYSLMDASGAEREKSPFLNDVRQMFRNL
                     DIIQLTHQHARDTLSLIEHPHQTKVHLFEAFKTWLDEGLISDTWFTTYAVMAQYPQLN
                     DGLTHLKSALTYNNDTVQLDGELTTQLYGKAIHASVSRFEGYQNCPFKHYTSHGLRLN
                     ERTKYQLQNFDLGTIFHDVLKYIAEKVEGRFNQLTELQIAQLTNDALETLLPHVQFNL
                     LNSTSYYRYLSQRIGAIVQATLYAMKYQTSHSQFKPIAFEKSFRKSPKDASELKAETL
                     YTSQGMPIYIRGQIDRIDTYQKENKSFVNIIDYKSSSSSASLDLVKVYYGLQMQMMTY
                     MDIALQNKERLGLVEEVKPGGFLYMYVHQFRDEKRAWNDIEAAKLDEAFLKSYQLQGL
                     LNNDVDVLEAYDERLTAGFKSDIVPLGMKKDGSLNATSKVADEATIYKLIQHNKQNFV
                     DIASRIMDGHNEVAPMQYRNHLPCQYCQYQAVCHVDSMIDSPKYRRVDEKINPLEILA
                     AEEEEDEV"
     gene            6466..10110
                     /gene="addA"
                     /locus_tag="PTC08_001475"
     CDS             6466..10110
                     /gene="addA"
                     /locus_tag="PTC08_001475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helicase-exonuclease AddAB subunit AddA"
                     /protein_id="HDK5682984.1"
                     /translation="MIPTKPEHVQWTDAQWESIYAKGQDVLVAAAAGSGKTAVLVERI
                     IQRILRDGIDVDRLLVVTFTNLSAREMKHRVEARIQQAAIEDPSNQHLKNQRTKIHQA
                     QISTLHSFCLRLIQQHYDVLDIDPNFRTASEVENVLLLEEVIDDVFEKHYDRLDPTFV
                     TLTEHISTDRDDAALRLMVKNLYDFSIANPDPIGWLHALDQPYLERHLQQHYLDILNK
                     YVQLYLQAAQNAIEEAYHQFELVGDFPKHIDFIEGHRQFLRRLLSEQFIDKTALATYQ
                     LGRIPPKPKAVKEDPMLDAAYENFKAYYEQFKNNLNAVKSTFVGRDDETLLEELQHLA
                     PRVKYLATLTEDVIHAFSRAKRARNILDFSDYEHFALQILRDEQGEPSEIAALYRERF
                     EEILVDEYQDTNRVQESIIGSIKRGDESNGNLFMVGDVKQSIYKFRQADPSLFIEKYQ
                     RFNQPDQSSGWRIDLSQNFRSRKEVLSTTNYLFDHMMDAEVGEIDYDAAAKLYYGAPY
                     DEVDIPVQFNVLMVDKDREMTASEQEAYFIAQQVQTILETQKVYDPKTGAYRPAQYKD
                     IVILERSYSNVRLIQQAFKDQDIPLFVNSKQGYFEQTEIRLMLSFLRTIDNPLQDIYL
                     VGLMRSVIYQFTEDELAKIRIVSPQDNYFYQSIQHYMDDEAADPAIVAKLKPFLNDLA
                     RYQDYSQRHPVYQLIDKLFNDHYIIQYFSALVGGRGRRANLHGLFNKAVDFENSSFRG
                     LFQFIRFIDQMIERGKDFGEENVIGPNDNVVRMMTIHSSKGLEFPFVIYSGLTRDFNK
                     NDLGKPVVLNQHAGLGLQYYDEARGLFYPSLISMSIDLINQKELISEEMRLMYVALTR
                     AKEQLYLIGTSKKADALEMMAAATITDEKLAAIDRFNAKNPFQLIYSILSKHQNTNIQ
                     RHQRFEVDVETLDAAVKPRLQLQHIDAGDVLPTEQDLATYQGHVIEALEARLAATPLD
                     DELAQRVIQQLLYVYPYQQAVQQVSKQSVSELKRQLDTEQADTNYERVRQYRLGVATY
                     ERPQFLQEQQHTAAEVGTLMHTVMQHLPFKEAGLTDQALNDYIESLVERSIIRAHDVN
                     VIVIEEIKRFIQSDLYDRIARSDEVYTELPFVVNQHQVEHTPDTTDASIIQGMIDLVF
                     KENGHYYFLDYKTDALIRRKGMSDEALERQLKEKYRVQMQYYQRALETILKCPVNGYL
                     YFFKYGELEI"
     gene            10193..11098
                     /locus_tag="PTC08_001476"
     CDS             10193..11098
                     /locus_tag="PTC08_001476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020220049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HDK5682985.1"
                     /translation="MKFLSFKYKGETSYGVKVKREEAAWDLKQVFANFGEGDFHPKTL
                     LEGLQQNQTLDFQEQVRKAVVAAENSGNGDAYKVKFEDIEFLPPVTPTNNVIAFGRNY
                     QAHAEELKHEVDRLYVFTKAASSLTGDESTIPNHQDITDALDYEGELGVVIGKSGEKI
                     PKGLALDYVYGYTIINDITDRNAQKAHDQAFLSKSLTGGCPMGPYIVTKDELPTPENV
                     NIVTKVNNEIRQDGNTSQMILKIDELIEEISKYVALHPGDIIATGTPAGVGAGMNPPK
                     FLQPGDEVKVTIDNIGTLTNFIAKD"
BASE COUNT         3749 a         1984 c         2402 g         3194 t
ORIGIN      
        1 cacgccaatg gatatgcttg ggtaagtcaa ttgaatttgt tgaaacaact tagtaaaatg
       61 aaggtacgtt aagttaaatt aggaggcaaa agtgtatgac acatatccaa ttagattatc
      121 aaaaagcttt aaaatttttt ggtcaacacg aattagatca gcaacaagat gctgttaaag
      181 caattcaccg tacaattcac gaaggtacag gtgcaggaag cgacttctta ggatgggttg
      241 acctaccagt taattatgat aaagaagaat tttcacgtat taaagaagca gctaaacaag
      301 tacaatcaca ttcagatgta cttgtcgtaa tcggtattgg tggttcgtac cttggtgcac
      361 gttcagcaat cgaaatgtta acaccagcat tcaaaaaaga tagcgaatat cctgaaatta
      421 tttttgcagg taatcattta tcatcatcat atttacaatc actcatcgac tatttagccg
      481 ataaagatta ttcagttaac gtgatttcaa aatctggtac aacgactgaa cctgcagttg
      541 cgttccgtat tttcaaaaaa ttattagaag agaaatatgg taaagaagaa gcagttaaac
      601 gtatttttgc aacaactgac caagcgaaag gtgccttgaa acaacttgcg acaaatgaag
      661 gctacgaaac gttcgtcgta cctgatgatg tcggtggccg tttctcagta ttaacggcag
      721 taggtttatt accaatcgct gtagctggta ttgatatcga tgcaatgatg ggcggtgcag
      781 caaaagcacg tgaagaatta tcttcggacg atttatcttc aaatattgca taccaatacg
      841 catcaatccg taatatcctt tacaacaaag gttacactac agaaatgtta atcaactacg
      901 aaccatcatt acaatacttc aatgaatggt ggaaacaatt attcggtgaa tcagaaggta
      961 aagacttaaa agggatttac ccttcaagcg ctaactttac aactgactta cactcattag
     1021 gtcaatatgt acaagaaggc cgtcgtttct taattgaaac agtattaaaa gtagaaaatc
     1081 ctgaacatga tattacaatt gaagaagatg cagaagactt agatggctta aactacttag
     1141 caggtaaaac agtagatgaa gtcaacacta aagcattcga aggaacttta cttgcacata
     1201 ctgacggtgg tgtgcctaac atggttgtta aattacctcg tttagacgcc gaaacttatg
     1261 gttatgttgt ctacttcttt gaattagcag tcgcaatgag tggttaccaa ttaggtgtga
     1321 acccattcaa ccaaccaggt gtagaagctt ataaacaaaa catgtttgca ttattaggta
     1381 aacctggatt tgaagataag aaaaaagatt tagaagcacg cttataaacc gagagggctg
     1441 ttgaatagaa tataaaaaag ggctgatgag catacgtctt gtcagtcttt tttattgcgt
     1501 acgttgactc agtgccctat tgctttttgt tcaaggattg agacatcaaa attattttgt
     1561 ttcaatgcgc gcagagattt atgattcaaa tgtaaaagtt aacgttttaa gagaaattat
     1621 gataagataa aatttgttat gatgaaattg ataggattgg gagtgcaaaa ttgaagtttc
     1681 tgataaagat gacattcgct ctaatcagcg cattggtcgt tttagccgtc ctcgttttgt
     1741 ttgttgtaat cccatatgaa gtaaaacatc aaaatatgga tacaacactg caaccccatg
     1801 atcggctgtt agtgaataaa atcgcaccac gctacaatgg gattcatcat caagatatcg
     1861 ttgtctacta tgcggaaggt caatatcgtg ttggacgcgt gattggagaa ccaggtcaat
     1921 cagttgaatt tcaaaaaggc caattgtatt tggaccatac ccctgtgact gaatcgtatg
     1981 tgaatcaaca agatcagcag tcatggtcac tgaaatcact gccgaattca gaaagtgata
     2041 tcataccgcc aaactcgtat ttaatattaa acgatcgtcg tgatgatgac gtcgattctc
     2101 gaaattttgg tctcattagg aaatcaacta ttgaaggtaa gttatggata cgttattatc
     2161 cttttgatag aataacgact catttttaaa ataagaggtg taaaactgtg aaaaaagaga
     2221 caatggaatg gttgctgtct ataggattag ccttattgat tgtaggtcta ttgtatgcat
     2281 ttgtcattaa accctataac attaaaggtg attctatgga ccctacatta aaagatggag
     2341 aaagagttat cgttaacaaa atagggaaaa ctttaggtca tttagataat ggtaatgtca
     2401 tcgtctttca tgcagatgaa acgaatgact atgtaaaacg tattatcggt aaaccgggtg
     2461 atcatgtcgt ttataaaaat gaccaactgt acttaaatgg taaaaaagta gatgaaccat
     2521 atttagatta taaccttaaa cataaaacat atgaacaaat tacgggttca tttgattcta
     2581 aagacttgcc aggtagcaac ggtcagaaac aaattccgaa agataaatat ctcgtgttag
     2641 gtgacaaccg cgaagtgagt aaagatagcc gtgcttttgg tcttatcgat aaagatcaaa
     2701 tcgtagggaa agttgcattt agattctggc cattgagtga atttaaaatc aacttcaatc
     2761 cagatcatac agattcacaa gagtaatcat caatgatcgc gcatgatgaa cagacatcat
     2821 ggagtgattc gataatcaaa aaactaacca gaggctggga gacgatgacg ttttcccggc
     2881 tttttctgtg tcaaaaagat ccaacaagcg accgactttc atagagtatc aagtggggtt
     2941 aatgctataa taaactttaa ataatgaatg ccgattcgta ttgaagaaag atagggggga
     3001 ttcgatgttt cgaacatttt taggtcgtgc tggaacgggc aagagcacac agatgttagc
     3061 agaaattaaa gacaaaatga aagcacaacc gatagggcat cccatcatta tcatcacacc
     3121 gatgcaaggg acgtatttgt atgaacaagt attcgtcaaa gacaccgaat tgttagggag
     3181 tgtacgtact gaagtgttgc actttgaacg actaggtcat cgtatttttc aagaagtagg
     3241 cggggtgcat gaaaaacgtt tgtcgtcgat tgccattgaa atgatgattt acgatatttt
     3301 acaagaagta caaacagagt tgaagttgta tcgctcacaa gtaggttata tgggatttag
     3361 tacaaaagtg cgtgaacaaa ttcaagactt tgaaaagtat gctgtgacgc ctgagatggt
     3421 ttcggacatg gctaccgatg cgcaccttga accgcgcacc cgacataagc tacatgacat
     3481 tgggttgatt tatgaaaaac tgcaagcacg tatgtcttcg gaatatatta cagcggaagc
     3541 gatgatggat cgacttgtca cgcttattcc acagtcgaag tggctcaaac aagcagaaat
     3601 atacatagat gggtttcata acttttctac tcaagaatat caactgatcg aagctttagt
     3661 gaagcatgtg aaatctgtga cgttagcatt aacgacaaac ggcgatcaag atgcattaag
     3721 catgttccgt aagccatctg agtcgttgcg tcattttgaa gagatggctc accgtgtcgg
     3781 tcagccactc gaacgcttgt attttcatac gcagcaccga ttcaaagcac catcattaac
     3841 cgtgttagaa cagcagtttg acgcattaca acctgaaagt catcacacag cagacgaagg
     3901 tattcgcata ttagaagcac cgacgacacg tgaagaagtt aatgaagtgg cacgtacgat
     3961 tttaagagat gtgcgtgaaa aacagtaccg ttatcaagat attgcaatat tgtatcgtga
     4021 tccgtcgtat gtctatttgt tagatgcgat tttgccacaa tatgatattc cgtacaatat
     4081 tgatgtcaaa aagtcgatga cgcatcatcc gattatggaa atgttgcgtg cactaatcga
     4141 agtgttacaa acagaatggc agtttgaacc gttgatgcgc ttgttgaaaa cgaatgtctt
     4201 aacccaagtg atgcctgaca gtgcgtattt agtctattta ttagaaaatt ttgcgataga
     4261 acgagggatt tatggcaaac gctggctcga tccacaatat tttgaactga atcaattccg
     4321 taaaatgggt atccgaccga atgatccgct gacggaagaa gaggctgcta catttgaacg
     4381 tgtgatcgat ttaaaaacga aagtctttaa tcaattgttg aattttgaag aaaaattagc
     4441 acaaggttca aatgccaaag cttttgcgac gtatttttat gaagcgatgg aaggttttga
     4501 actgcccaat cagttaatga cgcaacggga tatgttagat gagcaaggtc aacatgaagc
     4561 agcggaagaa attgaccaaa tatggaacgg gttgattcgc gtgttggatg atgtcgtgac
     4621 cgtgtttggt gaccgtgata tgacgttaac gcgcttttta gaagtgttag atgtcggttt
     4681 gaacgagctc gaattttcaa tgattccaca aacgttagat caagtgacaa ttgggacaat
     4741 ggatttagcg aaagtggata ataaaaagca cgtttatatg atcgggatga acgacggcgt
     4801 gatgccccaa gcaattaacg gctctggttt gatttcagat aatgaaaaga aagcgtttga
     4861 aacctttgcc ggtgtgcagt tgagcccgac ctcagatatt ttacaaatgg atgaagcatt
     4921 cgtctgttat tttgcgatga cacgtgcgac agaaacagtg acgttctcat acagtttgat
     4981 ggatgcgagc ggtgcagaac gagaaaaaag tccgttttta aatgatgtcc gtcaaatgtt
     5041 ccgcaactta gatatcatcc aattgacaca ccaacacgca cgtgacacgt tatcacttat
     5101 agaacaccca caccaaacga aagtgcatct atttgaagca tttaaaacat ggttagatga
     5161 aggattgatt tcggatactt ggtttacgac ttatgcagtg atggcacagt acccacaact
     5221 caatgacggg ctgacacatt tgaaatcagc gctcacatac aataacgata ccgtacaatt
     5281 ggatggagag ttgacgacac agctttatgg taaggcgatt catgcgagtg tgtcccgttt
     5341 tgaagggtac caaaattgtc catttaaaca ttatacgtca cacggtttga ggctcaatga
     5401 acggacgaaa tatcaacttc aaaactttga cttagggaca atttttcatg atgttttaaa
     5461 atatatcgcc gaaaaggttg aaggacgttt taatcaactc acagagcttc aaattgcgca
     5521 attgacgaac gacgcattag aaacattgtt accacatgta caatttaatt tgttaaactc
     5581 gacgtcgtat tatcgttatt tatcacagcg catcggtgca atagttcaag ccactttata
     5641 tgcaatgaaa taccaaacgt cgcattcaca atttaagcct atcgcatttg aaaagtcgtt
     5701 ccgtaaatca ccgaaagatg catcagaact aaaagcagaa acgttgtata catcacaagg
     5761 catgccgatt tatattcgtg gccaaattga ccgaatcgat acgtatcaaa aggagaataa
     5821 aagtttcgtc aatattattg attacaaatc atcctcttca agcgcatcac tcgatttagt
     5881 gaaagtgtat tacggcttgc aaatgcaaat gatgacctat atggatatcg cgcttcaaaa
     5941 caaagaacgt ttaggtttag tggaagaagt aaaaccaggt ggctttttat acatgtacgt
     6001 gcaccagttt agagacgaaa agcgtgcgtg gaatgatatc gaagcagcca agttagatga
     6061 agccttcttg aagtcgtatc aattacaagg attgcttaac aatgatgtag atgtattaga
     6121 agcgtatgat gaacgattga cagcgggctt caaatccgac atcgtgccac tcggtatgaa
     6181 aaaagatggc agtttgaatg cgacgagtaa agtggcggat gaagcaacca tttataaact
     6241 gatccaacat aataagcaaa actttgtgga tatcgcaagt cgtattatgg atgggcataa
     6301 cgaagtcgcg ccaatgcaat accgcaatca tttaccatgc caatattgtc aatatcaagc
     6361 cgtttgtcac gtagatagta tgattgatag tccgaaatat cgtcgagtgg atgaaaaaat
     6421 caatcccctt gaaatacttg cggcagaaga agaggaggat gaagtatgat tccaacaaaa
     6481 ccggaacatg tacagtggac cgatgcacag tgggaaagta tatacgcaaa aggtcaagat
     6541 gtacttgtag cagcagcggc gggttctggt aaaacagcag tcctcgttga acgtattatt
     6601 cagcgcattt tacgtgatgg cattgatgtt gaccgtttac tcgttgtgac gtttacaaac
     6661 ttgagtgcac gcgaaatgaa acatcgtgtc gaagcgcgta tccaacaagc cgctattgaa
     6721 gatccttcca atcaacattt aaaaaatcaa cgtacaaaaa ttcatcaagc acaaatttca
     6781 acgttgcata gcttttgttt acgtctcatt cagcagcatt acgacgtgtt ggacattgat
     6841 cctaatttta gaactgcgag tgaagttgaa aatgtcctat tgcttgaaga agtgattgat
     6901 gacgtgtttg aaaagcatta cgaccgtttg gatccaacat ttgtgacgtt gactgagcac
     6961 atttcgacgg atagagatga tgccgcatta cgtttaatgg ttaaaaattt atatgatttc
     7021 agtatcgcaa acccggatcc aattggttgg ttacatgcgt tagatcaacc ttatttggag
     7081 cgtcatttgc agcagcatta tttagatatt ttaaacaagt atgtccagtt gtatttacaa
     7141 gcagcacaaa atgcaataga agaagcgtat catcaattcg aattagtagg ggattttcct
     7201 aagcacattg attttattga gggtcaccgc caatttttgc gccgactatt aagtgaacag
     7261 tttatcgaca aaacagcatt ggcgacttat caacttggcc gcatcccacc taaaccgaaa
     7321 gctgtaaaag aagatccgat gcttgatgcg gcttatgaaa actttaaagc gtattatgag
     7381 caatttaaaa acaatcttaa tgcagtaaaa tctacattcg ttggacgtga tgatgagaca
     7441 ctgcttgagg aattgcaaca cttagcgccg cgtgtgaaat atttggccac tttaactgaa
     7501 gatgtcattc atgcattcag tcgtgcgaaa cgagcacgca acattttgga cttttcagat
     7561 tatgaacatt ttgcgctaca aattttaaga gatgaacaag gcgagccgtc cgaaattgcg
     7621 gcgttatatc gtgaacgttt tgaagaaata ttagtcgacg aatatcaaga tacgaaccgt
     7681 gtacaagaaa gtattattgg cagcattaaa cgaggggacg aatcgaacgg taatttattt
     7741 atggtgggcg acgtgaaaca gtctatttat aaatttagac aagcggaccc gagtctgttt
     7801 atcgaaaaat atcaacgttt taaccaacca gaccagtcaa gtggttggcg cattgattta
     7861 tcgcaaaatt tccgttctcg taaagaagtg ctctcaacga cgaactattt gtttgatcat
     7921 atgatggatg ctgaagtggg cgaaattgac tacgatgcag ctgcaaaact ttattatggt
     7981 gcgccgtatg atgaggtcga tatccctgtg cagtttaatg tcctcatggt cgataaagac
     8041 cgagagatga ccgcgagtga gcaagaggcg tattttattg cgcaacaagt acagacgatt
     8101 ttagaaaccc aaaaagtgta tgatccgaaa acaggtgcgt atcgtccagc acaatataaa
     8161 gatatcgtca tccttgaaag aagttacagc aatgtaagac ttattcaaca agcgtttaaa
     8221 gatcaggata ttccgctatt tgtgaatagt aagcaaggtt attttgaaca aacagaaatc
     8281 cgcttaatgt tgtcgttttt acgtacgatt gataatccgc tacaagatat ttatttagtc
     8341 ggtttaatgc gttcggtcat ttatcaattt acagaagatg aactggctaa gattcgtatt
     8401 gtatcaccgc aagataacta tttttatcaa tccattcaac attatatgga tgatgaagcg
     8461 gcggatcctg caattgtggc aaagttaaag ccgtttttaa atgatttagc acgctaccaa
     8521 gactacagcc aacgtcatcc agtataccaa ctcatcgata aactgtttaa tgatcattac
     8581 atcattcaat attttagtgc acttgtaggt gggcgtggcc gtcgtgcgaa tttacatggg
     8641 ttgtttaata aagctgtcga ttttgaaaat tctagttttc gcggtttatt tcaattcatt
     8701 cgttttatcg accaaatgat tgaacgaggc aaagattttg gtgaagaaaa tgttattggt
     8761 ccaaatgata atgtcgtacg tatgatgacg attcatagta gtaaaggtct tgaatttcca
     8821 tttgtcattt attcagggtt aacgcgcgac tttaataaaa atgatttagg aaaacctgtt
     8881 gtattgaatc aacatgcagg tctcggttta caatattacg atgaagcacg aggattgttt
     8941 tatccatcgc ttatttctat gagtatcgat ctgatcaatc aaaaagagtt aatctctgaa
     9001 gaaatgcgct tgatgtatgt tgccttaaca cgtgcgaaag aacaactcta cttaattggg
     9061 acgtccaaaa aagcagatgc actcgagatg atggcagccg ctacaatcac tgatgaaaaa
     9121 ttagcagcca ttgaccgatt taatgcgaaa aacccgtttc agctgatata cagtattttg
     9181 agtaaacatc agaatacgaa tattcagcgc catcaacgtt ttgaagtgga tgttgagact
     9241 ttggatgcag ctgtcaagcc gcgacttcag ttacaacata ttgatgcagg tgacgtgtta
     9301 ccaacagaac aagatttggc gacatatcaa ggtcacgtga tcgaagcgtt agaggcgaga
     9361 cttgcagcga ccccgttaga tgatgaactt gcgcaacgtg tgatacaaca attgttgtat
     9421 gtttatccgt atcaacaagc tgtacaacaa gtttcaaagc aatctgtttc agagcttaaa
     9481 cgtcaactcg atacagaaca agccgatacg aactatgagc gtgtccgaca atatcgttta
     9541 ggcgtggcca cgtatgagcg gccgcagttt ttacaagaac aacaacatac tgcagcagaa
     9601 gtaggaacat tgatgcatac ggttatgcaa catctgccat ttaaagaagc cggattaaca
     9661 gatcaagcat taaatgacta cattgaatca ttggtcgaac gttcaatcat tcgcgcacat
     9721 gatgtcaatg tgattgtgat tgaagaaatt aaacgtttca ttcaaagtga tttgtatgac
     9781 cgtattgcga gaagtgacga agtgtataca gaattgccat ttgtcgtgaa tcaacatcaa
     9841 gtcgaacata caccagatac gacagatgcc tctattattc aagggatgat tgacttggtc
     9901 tttaaagaaa atggccatta ttacttcttg gactataaaa ccgatgcact cattcgtcgt
     9961 aaagggatgt ccgatgaagc gttggaaaga caattgaagg agaaatatcg tgttcaaatg
    10021 caatattatc aacgtgcatt agaaaccatt ttaaaatgcc cagtaaacgg ctatttatac
    10081 ttctttaaat atggcgaact cgagatttaa gcggctttac tttaaaaatt tgtgatttgt
    10141 ccaaaatatt cgttataata tgactaagat atacgttagg agctgattat gaatgaaatt
    10201 cctatcattc aaatataaag gtgaaacttc atatggagtg aaggtaaaaa gagaagaagc
    10261 ggcttgggat ttaaaacaag tctttgcaaa ctttggagaa ggtgatttcc atcccaaaac
    10321 attgctcgaa ggattacaac aaaaccaaac tttagacttt caagagcaag tacgtaaagc
    10381 agttgttgct gcagaaaaca gtggtaacgg cgatgcgtat aaagtgaaat ttgaggatat
    10441 cgaattttta ccaccagtaa cacctacgaa taacgtcatt gcatttggcc gtaactatca
    10501 agcacatgct gaagagttaa agcatgaagt ggatcgttta tatgtattta cgaaagcagc
    10561 ttcgtcatta acaggtgatg aaagtacgat tccgaaccat caagacatta cagacgcttt
    10621 agattatgaa ggcgagctgg gtgtcgtaat cggtaaatca ggcgaaaaaa ttccaaaagg
    10681 tttagcgttg gattatgtat atggttatac catcattaat gacatcacag accgtaatgc
    10741 acaaaaagca catgaccaag cattcttgtc taaaagttta acagggggtt gcccaatggg
    10801 gccatacatc gtgacaaaag atgaacttcc tacacctgaa aacgtaaata tcgtgacaaa
    10861 agtaaacaat gaaattcgtc aagatgggaa tacgtcacaa atgattttga aaattgatga
    10921 gttaattgaa gaaatttcaa aatatgtggc gttacaccca ggagacatta ttgcgacagg
    10981 tactccagca ggcgtcggtg cgggtatgaa tccgccgaag tttctacaac ctggtgatga
    11041 agtgaaagtc acgattgata atattggaac gttaacaaac tttattgcga aagattaata
    11101 tgaaataagc atcaagtgat tttgcgcttg gtgctttttt attgatggcg aagatagtgt
    11161 ttttaaattg ccgaacacac cccttggaca gcgaagctat gatggcaatt aagaaccaca
    11221 aaacataggg ggcaagttta acacaaatat gacatcaaaa gcatcgaaaa tttttgtgtc
    11281 tcatcctctt cagtgcatgt tataaaaatg ttgctgtttg ctttgatta
//
LOCUS       DANHOL010000076        11116 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.076, whole genome shotgun sequence.
ACCESSION   DANHOL010000076 DANHOL010000000
VERSION     DANHOL010000076.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 11116)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11116)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11116
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.076"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(101..601)
                     /gene="queF"
                     /locus_tag="PTC08_001477"
     CDS             complement(101..601)
                     /gene="queF"
                     /locus_tag="PTC08_001477"
                     /EC_number="1.7.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent 7-cyano-7-deazaguanine reductase
                     QueF"
                     /protein_id="HDK5682986.1"
                     /translation="MTEGRSKDELQDITLLGNQNNTYNFDYRPDVLETFDNKHQNRDY
                     FVKFNCPEFTSLCPITGQPDFATIYISYIPNVKMVESKSLKLYLFSFRNHGDFHEDCM
                     NIIMNDLIELMDPHYIEVWGKFTPRGGISIDPYTNYGRPNSKYEKMAEHRLMNHDMYP
                     EKIDNR"
     gene            complement(621..1502)
                     /locus_tag="PTC08_001478"
     CDS             complement(621..1502)
                     /locus_tag="PTC08_001478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HDK5682987.1"
                     /translation="MNTKVKGILAILISAIGFSFMAVFFRLSGDLPVFQKSLARNFVA
                     MFIPLFFILKYKQPFFGKLSSQPLLVTRSVLGLMGVLLNIYAIDHMVLSDADILMKLN
                     PFWTILLSLIFLKEFIQKYQITSMVIAIIGMLFVVKPEFSSDVIPAIVGLLSGVFAAS
                     AYTAVRALSTREAPYTIVFYFSFFSVIVLIPFVAFTFEPMSLIQIVYLILAGLSAAVG
                     QIGITVAYSYAPAKDISIFTYASIIFTAIIGFILFNESPDFYAIIGYIIILSASYYMF
                     EKARRSTSSKHRQQPSK"
     gene            2127..2525
                     /gene="nrdI"
                     /locus_tag="PTC08_001479"
     CDS             2127..2525
                     /gene="nrdI"
                     /locus_tag="PTC08_001479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class Ib ribonucleoside-diphosphate reductase
                     assembly flavoprotein NrdI"
                     /protein_id="HDK5682988.1"
                     /translation="MKVVFYSFTGNVRRFIKRTELDNTLEINETNTLEKVTEPFIIVT
                     GTIGFGEVPQPVQQFLECNHENLKGVAASGNRNWGTNFAKAGTRIAEMYNVPLLMKFE
                     LHGNAHDTIEFKEKVVNFYENYGTKTIQAH"
     gene            2488..4593
                     /gene="nrdE"
                     /locus_tag="PTC08_001480"
     CDS             2488..4593
                     /gene="nrdE"
                     /locus_tag="PTC08_001480"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000855513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1b ribonucleoside-diphosphate reductase
                     subunit alpha"
                     /protein_id="HDK5682989.1"
                     /translation="MKTMEQKQYKHIELNNQVTKRNENGFFQLEKDQEALASYLEEIQ
                     DKTVHFDSELERLHFLVDNHFYYNVFEEYSEAQLVELIAFATEIPFRFASYMSASKFF
                     KDYALKTNDKSQYLEDYHQHVMIVSFYLAKGNVELAKKLIQAMVEQRYQPATPTFLNA
                     GRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLRARGEAIKGIK
                     GVAKGVLPIAKALEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKINADEDLRL
                     STISTGLIVPSKFFELAKEGKDFFMFAPHTVEQEYGVTLDDINIDEYYDRLVENPNIM
                     KKSKDAREMLNMIAQTQLQSGYPYLMFKDNANRVHANSNIGQIKMSNLCTEIFQLQET
                     SVIHDYGVDDEIKRDISCNLGSLNIVNVMESNQFRDPVHTGMDALTVVSDEANIQNAP
                     GVKKANSELHSVGLGVMNLHGYLAKNHISYESEEAKDFADVFFMMMNYYSIERSMQIA
                     KERGETFKDFDKSDYASGRYFERYTSEDFLPKSEKVKALFANHTIPTRDDWKVLQAEV
                     EKYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNSETFYPMPFLSPQTM
                     WYYKSAFNIDQMKLIDLIATIQTHIDQGISTILYVNSEISTRELSRLYVYAHHKGLKS
                     LYYTRNKLLSVEECTSCAI"
     gene            4821..5783
                     /gene="nrdF"
                     /locus_tag="PTC08_001481"
     CDS             4821..5783
                     /gene="nrdF"
                     /locus_tag="PTC08_001481"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1b ribonucleoside-diphosphate reductase
                     subunit beta"
                     /protein_id="HDK5682990.1"
                     /translation="MIAVNWNTQEDMTNMFWRQNIAQMWVETEFKVSKDIASWKSLTE
                     AEQDTFKKALAGLTGLDTHQADDGMPLIMLHTQDLRKKAVYSFMGMMEQIHAKSYSHI
                     FTTLLPSKETDELLDVWVLEEPHLKYKSEKIVGTYHKLWGKEASIYDQYMARVASVFL
                     ETFLFFSGFYYPLYLAGQGRMTTSGEIIRKILLDESIHGVFTGLDAQSLRNELSESEK
                     QKADKEMYQLLEDLYANEASYTRSLYDPIGLTDDVMNYVRYNGNKALSNLGFEPYFEE
                     REFSPIIENALDTSTKNHDFFSVKGDGYVLALNVESLQDEDFIF"
     gene            complement(6165..6479)
                     /locus_tag="PTC08_001482"
     CDS             complement(6165..6479)
                     /locus_tag="PTC08_001482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5682991.1"
                     /translation="MPKVYGATVDQETRCTHYNTPFDVIAIKFKCCHKYYPCFKCHNE
                     SEKHRPKRWHSDEFDERAILCGVCGYEMPIETYMMTESCPECEAHFNNRCKFHYHHYF
                     EI"
     gene            complement(6504..7424)
                     /locus_tag="PTC08_001483"
     CDS             complement(6504..7424)
                     /locus_tag="PTC08_001483"
                     /EC_number="1.3.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009383088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate dehydrogenase"
                     /protein_id="HDK5682992.1"
                     /translation="MNHSSILQDLEKLIPASIIKVDEPLKRYTYTETGGNADFYISPE
                     RYEDVQKVVKYAYEHDIPVTYLGNGSNIIIRDGGIRGIVLSLLSLNHIVTSDATIIAG
                     SGAAIIDVSRKARDVSLTGLEFACGIPGSIGGAVYMNAGAYGGEVKDVIDYALVIDER
                     GELLKLTHNELELDYRNSIIQQQHYVVLEAAFTLTPGKQEDIQEKMDDLTERRESKQP
                     LEYPSCGSVFRRPPGHFAGQLIQNADLQGHRIGGVEVSRKHAGFMVNVDHGTATDYEN
                     LIHHVQNVVKEKFGIELEREVRIIGEDLEK"
     gene            complement(7578..8096)
                     /locus_tag="PTC08_001484"
     CDS             complement(7578..8096)
                     /locus_tag="PTC08_001484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GrpB family protein"
                     /protein_id="HDK5682993.1"
                     /translation="MYRHVQPFMTENQQPFYATQYEKYQHILFDLLDSPVKFTQHIGG
                     TFHFNYPTEPILDILVGVENLHDITSLDEKRLNYAGFYRLHHAYEKKVVMAKFNNLNE
                     LKQEVRLHIIQMHTPTFQQYQQFHELLTHHPAAIQFFKAQKASLEQPFMPIRDYENLK
                     KQWFKQLQQYTT"
     gene            8207..9100
                     /locus_tag="PTC08_001485"
     CDS             8207..9100
                     /locus_tag="PTC08_001485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EMYY motif lipoprotein"
                     /protein_id="HDK5682994.1"
                     /translation="MKKWIKIIILSFLMIGSLTACMASSQKQMHAFDQQMKTVAEKER
                     IVNRTLEEMNLNQLYDLSQTNTTDANKKAFEQFKKQIDDKLKPAMKVYHQEAKALPEP
                     NKDLKALKSTYLEGIKGKEEIIEKLDQFIVLCQNSIRANENILEFTQQFEKHRSRVEA
                     QISSAKQTSQGIEDSTKLEERLDENNHHIKEKAETSIREKDGKAQMQAIQEEVIPLVQ
                     TQIKDLNEMQLRDEMTNHARQNAVQMYYSLERYYQERLKTIDYNQKLAQANIRKLITK
                     AKDLDSYNAPYENQRDQLNSN"
     gene            9265..9585
                     /gene="ytxJ"
                     /locus_tag="PTC08_001486"
     CDS             9265..9585
                     /gene="ytxJ"
                     /locus_tag="PTC08_001486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacillithiol system redox-active protein YtxJ"
                     /protein_id="HDK5682995.1"
                     /translation="MAIKLTSIDQFEQVIEENPYIFILKHSNTCPISENAFDQFNKFL
                     YERDMDGYYVVVQEVRELSDYIAEKTGVQHESPQALYFVNGEVKWHDSHKNVNVSELA
                     KAEE"
     gene            9940..11055
                     /locus_tag="PTC08_001487"
     CDS             9940..11055
                     /locus_tag="PTC08_001487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerate kinase"
                     /protein_id="HDK5682996.1"
                     /translation="MKILIAMDEFNHIISSYDANRYVEEGVASQIEDADIVQVPLFNG
                     RRELLNAVFLWKSGTQYQIPVHDAAMQAVDATYGQTDDGITVIEAGQFLKGTLPLVEQ
                     SSYGVGEVMRHALDKNAQHMIISVGAIDTFDGGAGMLQALGAQFYDDEGRTVDMTKGG
                     GQIKHVRRIDLEDLHEGLKQCRIQIVTDFESKLYGKQSAVMKTYPNLQIDREEAVVID
                     NLLWYWSELFKHQHHIVLGTVERGGAGGGIAATLHALFKAEIQTSHELVDQITGLNAL
                     VKQADLVVFGEGIDEQDEMIETSSLRIAELCQQYDKPAIALCGTADKFERFEALGVTG
                     MFNTFIDMPKTLTDFKMGIQLRNYAVQAIRLLRTSFN"
BASE COUNT         3772 a         1756 c         2233 g         3355 t
ORIGIN      
        1 ttttattata caagggggaa atgctaaatc ctagatgtgc aaatcaaaaa ttaggctttc
       61 gctccttgag agattttgtt tactctaatt gtattaattt ttatcgatta tcgatttttt
      121 ctggatacat gtcatgattc atgaggcgat gttctgccat tttttcgtat ttcgaatttg
      181 gacgaccgta gttagtgtat ggatcgattg aaatgccgcc acgtggtgtg aacttgcccc
      241 atacttcaat gtagtgcgga tccattaact caattaagtc attcataata atattcatac
      301 agtcttcatg gaaatcacca tggttacgga aactgaataa ataaagtttt aatgatttag
      361 attcgaccat tttaacattt ggaatatatg aaatgtaaat ggttgcaaaa tcaggttgtc
      421 ctgtaattgg gcataaagat gtgaactcag gacagttaaa tttaacaaag taatcgcgat
      481 tttggtgttt attatcaaat gtttctaaaa catctggtcg ataatcaaag ttgtaagtgt
      541 tgttttggtt gccgagaagt gtaatatctt gtaattcgtc ttttgaacgt ccttctgtca
      601 tgaggaaggc ctcctttata ttattttgat ggttgttgac gatgcttaga acttgtcgag
      661 cgtcgtgctt tttcgaacat ataatagctt gcacttaaaa taatgatata accgataatg
      721 gcataaaagt caggtgattc attaaataag ataaagccga taattgctgt aaatataata
      781 gacgcataag taaatatcga aatatctttg gctggtgcgt aactatatgc gactgtaata
      841 ccgatttggc ctactgcagc ggacaaacct gctaaaatca agtaaacgat ttggattaag
      901 ctcatcggtt caaatgtaaa tgcgacgaat ggtatcagca caataaccga aaagaatgag
      961 aaataaaata caatcgtgta tggggcttct cgtgtactta aagcacgtac agcggtatat
     1021 gctgaagccg cgaaaacacc ggataacaat ccgacaattg ccggaatcac atcagatgaa
     1081 aattcaggtt tgacaacgaa aagcataccg ataattgcga taaccattga agtaatttga
     1141 tatttttgaa taaattcctt taaaaagatg aggcttaaca atatcgtcca aaaaggattc
     1201 aacttcatca aaatatcggc atcgcttaat accatgtgat caatcgcata gatgtttaac
     1261 aggacgccca ttaaacctaa aacagaacgt gtcactaata aaggttgact actgagttta
     1321 ccgaagaagg gctgtttata tttaagaata aagaataacg gaataaacat ggctacgaaa
     1381 tttcgagcga gtgatttttg aaatacgggt aaatcgccgg atagacgaaa aaaaactgcc
     1441 ataaaactaa aaccaatagc agaaattaaa atagcgagga ttcctttcac tttagtattc
     1501 atgatatcgc ctcttattga taaaaatttg acttatacat agtagcacaa aatgaaacaa
     1561 cttgcattat atcttgcaat tttactaaaa ggagctacaa ttaaagggaa catacgttct
     1621 gtttaagagg tctgtataaa cgtttcggtt aagaaagtca agtgagagat gcacttcaat
     1681 cagaaaataa ttttttcaac tcttctagta gttgatttca tcgcttttga tgacaatggg
     1741 tgacaaaagt tccaatttat ctctttaaat tgagaataga gttctgtata atgagacaca
     1801 taatatagta tggtcgaatg aaaataaaca caatatattg tgtttgatga gcggataaca
     1861 tcacgagaat ggacaaaatc aatggaggtt tacacgattt tgaacattct atttctttga
     1921 taatctacat atagtagttg aaaaatataa gtcattattg tacgacgata atggtatatc
     1981 atcaactttt taacttattt taagaataga gataaagcaa atgtatgttc gcattttatt
     2041 caataacatt tatattgtgg atgagagaaa agttacaatg aacgatacgt gaatcattta
     2101 tctcggaaga aaggtggtta ttcaggatga aagtagtatt ttattctttt acaggtaatg
     2161 tcagacgatt catcaaacgt acagaacttg ataacacact agagattaat gagacgaata
     2221 ctttagaaaa agtgactgag ccattcatta tcgtcacagg gaccattggt tttggtgagg
     2281 tacctcaacc agtccagcaa tttttagaat gcaaccatga aaatttaaag ggtgtcgcag
     2341 caagtggtaa ccgaaactgg gggactaact ttgcgaaggc aggtacacgg attgcagaaa
     2401 tgtataacgt ccctttacta atgaaatttg aactacatgg taatgcacac gatacaatcg
     2461 aatttaaaga gaaggtggtc aatttttatg aaaactatgg aacaaaaaca atacaagcac
     2521 attgaactta ataatcaagt gacaaaaaga aatgaaaatg gcttttttca acttgaaaaa
     2581 gatcaagaag cacttgcaag ttatttagaa gagattcaag ataaaactgt tcattttgat
     2641 agcgaacttg aacgccttca ctttttagtt gacaatcatt tttattacaa tgtatttgaa
     2701 gaatacagcg aagcgcaact tgttgaatta attgcatttg caacagagat tccatttcgt
     2761 tttgctagtt atatgtcagc aagcaaattt tttaaagact atgcattaaa aacgaatgat
     2821 aagtcacaat atctggaaga ctatcatcaa catgtaatga tagtgtcatt ttatcttgca
     2881 aaaggtaatg ttgaacttgc taaaaaattg attcaagcaa tggtagagca acgttaccaa
     2941 ccagcaaccc ctactttctt gaacgcaggt cgtgcgcgta gaggtgaatt agtttcatgt
     3001 ttcttattag aagtagatga cagtttaaac tctattaatt ttattgattc aactgctaaa
     3061 caattgagca aaattggtgg cggggtagct attaaccttt ccaaattgcg tgcaagaggt
     3121 gaagcgatta aaggcataaa aggtgttgcg aaaggggttt tacctattgc taaagcactt
     3181 gaaggtggtt ttagctatgc tgatcaatta ggtcaacgtc caggtgctgg ggcagtgtat
     3241 ctaaatattt tccactatga tgtagaagaa tttttagata cgaagaaaat taacgcagat
     3301 gaggatttgc gtctttcaac gatttcaaca ggtctgattg taccgtctaa gtttttcgaa
     3361 ttggcgaaag aaggtaaaga tttctttatg tttgcccctc atacagtaga acaagaatat
     3421 ggcgtgactt tagacgatat taatattgac gagtattatg atcgtcttgt cgaaaatcca
     3481 aatatcatga agaaaagtaa agatgcacgt gaaatgttaa atatgattgc acaaacgcaa
     3541 ttgcaatctg gctaccctta tttaatgttt aaagataatg ctaaccgtgt gcatgcgaat
     3601 tctaatattg gccaaattaa aatgagtaac ttatgtacag aaattttcca acttcaagaa
     3661 acatctgtga ttcatgatta tggcgtagat gatgaaatca aacgtgatat ttcttgtaat
     3721 ctaggttcat taaatattgt gaatgtcatg gaatctaatc agtttagaga tcctgttcat
     3781 acaggaatgg atgcattaac agtcgtaagt gacgaagcta atattcaaaa tgcaccaggc
     3841 gtcaaaaagg cgaacagtga actccactca gttgggcttg gtgtgatgaa tttgcatggt
     3901 tatttagcta aaaatcatat cagttacgaa tcagaagaag cgaaagattt tgcagatgta
     3961 tttttcatga tgatgaatta ttattcaatt gaacgttcga tgcaaattgc taaagaacgt
     4021 ggtgaaacat tcaaagattt tgataaatcg gattatgcga gtggacgcta ttttgaacgc
     4081 tatacgtctg aggacttttt accaaagtct gaaaaggtaa aagctctgtt tgcaaatcac
     4141 actattccta cacgtgacga ttggaaagta ttgcaagctg aagttgaaaa atatggctta
     4201 tatcatgcat accgtttagc gattgcacca acacaaagta tttcgtatgt gcaaaatgcg
     4261 acaagttcgg tcatgccaat tgtcgaccaa attgagcgac gtacatatgg gaattcagaa
     4321 acgttttacc ctatgccgtt tttatcaccg caaacaatgt ggtattacaa atcagctttc
     4381 aatattgatc aaatgaagct gatcgatttg attgcaacga tccaaacgca tattgaccaa
     4441 gggatttcaa caattctata tgttaactca gaaatttcaa cgcgtgaatt gtcacgttta
     4501 tacgtttatg cgcatcataa aggtttgaaa tctttatact atacacgtaa taaattattg
     4561 agtgtcgaag aatgtacgag ctgtgcgatt taatttttta gatttaaaga cggacttatg
     4621 atatcacgta ggtctagtga ttgaagtgat acttgtgagg atagcggtga acaaatggtt
     4681 ttatagtgca gtttactcaa cttgggcgaa agtgtgcgac acaaactttt gctcgactca
     4741 caatgttaaa atttatggaa tggggcattg gtttgtccca tttgtcatac aatatataaa
     4801 agataggagc aaagaagtca atgatagctg taaattggaa tacacaagaa gatatgacaa
     4861 atatgttttg gcgtcaaaac atcgctcaaa tgtgggtgga aacagaattt aaagtttcta
     4921 aagatattgc aagttggaaa tcattaactg aagcagaaca agatacattt aaaaaagcgc
     4981 ttgcaggttt aactggatta gatacacacc aagcagacga tggtatgcct ttaatcatgt
     5041 tacatacaca agacttgcgt aaaaaagcag tctattcatt catggggatg atggaacaaa
     5101 tccatgccaa aagttattcg cacattttta ctacgttact tccatctaaa gaaacagatg
     5161 aattattaga tgtctgggta ttagaagaac cacatttaaa gtataagtct gaaaagattg
     5221 tcggcactta tcataaatta tggggaaaag aagcatctat ttatgatcaa tatatggcac
     5281 gtgtggcgag tgttttttta gagacattcc tctttttctc aggtttctac tatcctttgt
     5341 atttggcagg acaaggccgt atgacaacat caggtgaaat catccgtaaa atcttactgg
     5401 acgagtcgat tcatggtgta ttcactggtt tagatgcaca aagtttgaga aatgaattgt
     5461 cggaaagtga gaaacaaaaa gcggataaag aaatgtacca attattagag gatttatacg
     5521 cgaatgaggc atcatataca agaagtttat acgatccgat tggtttaact gatgatgtga
     5581 tgaactatgt tcgttataat ggtaacaaag cgctctccaa tctaggtttt gaaccgtatt
     5641 ttgaagaacg cgagtttagt ccaatcatcg agaatgcgtt agacacttct actaaaaatc
     5701 acgacttctt ctcagttaaa ggtgatggct atgtacttgc attaaatgtt gaatctttac
     5761 aagatgaaga ttttattttt taacgattaa agtgtcaatg aaaggctcta tgtcaaatag
     5821 gactgatgag cataatacag aggttaagca aaatagcgtt gcttaacctc ttttttagat
     5881 gggctataaa aacaggattt ccgtgcgtta tctttactca tagggtgtca aaaaggtaag
     5941 gcttctagga gaggaatgaa aagtaaaaaa aggcctgttc attttgacga aggtcgcttt
     6001 gttgcaatag ctacctgtct tctcaatgta agttttgaga aagcgaggca gccgtgggaa
     6061 tgaggactta aagttctagc actacgaata tagcaccaaa agacgattca gaagataata
     6121 tttaagatgt ttaaaggttg ttatattaca ttataatgaa aaaattaaat ttcgaaataa
     6181 tggtgataat gaaacttaca ccggttgtta aaatgcgctt cacattcagg acaagattcg
     6241 gtcatcatat acgtttcaat cggcatctca taaccacaaa cgccacataa aatagcgcgc
     6301 tcatcaaatt catccgaatg ccaacgtttc ggacgatgtt tttcagattc attatgacat
     6361 ttaaagcaag gataatattt atgacaacat ttaaacttaa ttgcgatgac atcaaatggc
     6421 gtattgtagt gagtacaacg tgtttcttgg tcgacagtcg caccataaac tttcggcata
     6481 gcattcgctc cttaaacttt tctttatttc tctaaatctt ctccaataat ccgaacttct
     6541 ctttctaact caatcccaaa tttttctttc acaacgtttt ggacatgatg aattaagttt
     6601 tcgtagtctg tcgctgttcc gtgatcgaca tttaccataa atccagcatg tttacgagag
     6661 acttccacgc caccgatacg atgcccttgc aagtcggcat tttgaatgag ttgacctgca
     6721 aaatgaccag gcggacgacg gaaaacacta ccgcatgatg gatattcaag tggttgcttg
     6781 gattcgcgtc gttcagtgag atcatccatt ttctcttgaa tgtcttcttg cttcccaggt
     6841 gtgagtgtaa atgcagcttc caacacgaca taatgctgtt gttggataat actattacga
     6901 taatccaatt caagctcatt atgtgttaat ttaagcaact cgccacgttc atcgatgaca
     6961 agtgcgtaat cgatcacatc ttttacttcg cccccataag cacctgcatt catataaaca
     7021 gcgccaccga tagaaccagg aatcccacag gcaaattcaa gacctgttaa tgaaacgtcg
     7081 cgtgcttttc gagacacatc gattatagcc gcaccactgc ctgcaataat tgtcgcatca
     7141 gaagtaacga tgtgatttaa agatagtaag ctcaatacga ttcctcgaat accgccgtct
     7201 ctaataataa tatttgaacc atttcctaaa taggttacag gtatgtcatg ttcatacgca
     7261 tatttcacga ctttttgtac gtcttcataa cgttcaggtg aaatataaaa atccgcattc
     7321 cctccagttt cagtgtaagt atagcgtttt aatggttcat ctaccttaat aatacttgca
     7381 ggaatcagtt tttctaaatc ctgtaagatg ctagaatgat tcacaaataa catcctttct
     7441 cttcattata atccatagtg tttttgccaa ttataaatca atttttcata tttgatggtt
     7501 tttacaaagt gtgtttggta tttttagact taactatatt ttaactgttt taatagaaca
     7561 cgtcatgtat gaacttttta tgttgtgtat tgttgaagtt gtttaaacca ttgctttttt
     7621 aagttttcat aatctcggat tggcatgaat ggttgttcga gagaggcttt ttgggcttta
     7681 aaaaattgaa tggctgctgg atgatgcgtt aataattcat gaaattgttg gtattgttgg
     7741 aaagtaggcg tgtgcatttg aataatatgt aagcggactt cttgctttaa ttcattcagg
     7801 ttattaaatt ttgccatcac gactttcttt tcgtaagcat ggtgtaaacg ataaaatcca
     7861 gcatagttta gtcgcttttc atctaatgac gtaatgtcgt gcaaattttc aacaccgact
     7921 aaaatatcta aaataggttc agtcggataa ttaaaatgaa aagtaccgcc gatatgttgt
     7981 gtgaacttca ccggtgagtc taagagatca aacaaaatgt gttggtattt ttcgtattgt
     8041 gtcgcataaa atggctgttg attttcagtc ataaaaggtt ggacatgacg atacatatgg
     8101 aggcctcctt gagtgtcctt ttgcgtaatt ctgcattact atatcatata ttattttcaa
     8161 gttaaatacg tttatgtata atacgaattg aataagaggt gcagcgatga aaaaatggat
     8221 aaaaataatc attttaagtt ttctgatgat tggcagtctt accgcatgta tggcatcatc
     8281 tcaaaagcag atgcacgcat tcgatcaaca aatgaagact gttgcagaaa aagaacgcat
     8341 tgtgaatcga acattagaag aaatgaattt aaaccaactg tatgatttga gtcaaacaaa
     8401 tacgacagat gcgaacaaaa aagcatttga acaatttaaa aagcaaatag acgataaatt
     8461 aaagccagcg atgaaagtgt atcatcaaga ggcgaaagca cttcctgaac caaataaaga
     8521 tttgaaagcg ttgaagtcta catatttaga gggcataaag ggtaaagaag agataattga
     8581 aaaattggat cagtttatcg tactctgcca aaattcaatt cgcgcgaatg aaaacatact
     8641 ggagttcaca caacaatttg aaaagcatcg cagtcgtgta gaggcacaaa taagtagtgc
     8701 gaaacaaacg tcacaaggca tagaagatag cacaaaatta gaagagcgac tcgatgaaaa
     8761 taatcaccat atcaaagaga aagcagagac ctctattcgt gaaaaggatg ggaaagcaca
     8821 aatgcaggcg attcaagagg aagtgattcc gttagttcaa acacaaatta aagatttaaa
     8881 tgaaatgcaa ctccgagatg agatgacgaa ccacgcccga caaaatgcag tgcaaatgta
     8941 ttatagtctt gagcgctatt atcaagaacg tctcaaaacg attgactata atcaaaaatt
     9001 agctcaggcg aatattcgta aactcattac aaaggcaaaa gatttggaca gctataacgc
     9061 accatacgaa aatcagcgtg atcagttgaa ttcaaactaa tggacgcgcg ctgtttcaga
     9121 tggattgttt cggtagatgg ggagcggatt caaaattaaa ggttaacaag cctatattat
     9181 gtgtgtataa tggtaaacat tgagaaaagt acttaattaa tttagataaa agacaaacag
     9241 aaaatctact tagaggtgaa gagaatggcg attaagctaa cttcgattga ccaattcgaa
     9301 caagtgattg aagagaatcc atatatcttt attttaaaac atagcaatac ttgtccgatt
     9361 tcggaaaacg cgttcgatca atttaataaa tttttatatg agcgtgatat ggatggttac
     9421 tatgtagtag ttcaagaagt acgtgaacta tcggattata ttgctgaaaa gacaggtgtc
     9481 caacatgaat cacctcaagc gctttatttc gtaaacggtg aggtcaagtg gcacgacagt
     9541 cataaaaatg tgaatgtctc tgaacttgcg aaagctgagg aataggctga gattgtttgg
     9601 taatggttga atcgatgtga tgatatgtca tgattggtat gcctgaaaag cgtaaccaag
     9661 caatatttga aaatatatga aagcaacaca tgtgataaac taggatgtgt tgctttttat
     9721 tttgatcaat gacataagcg tgatgagtgc atcgtatcat gggaattaaa gcgctacgtt
     9781 taaatgagtt gtttagttca tttgtacact tttgaaggtc aaggctataa tatagaataa
     9841 tgagattaga agttattaac ggatattaaa tcaataaagt atatattcaa ttagacgaga
     9901 tgttgaacat caatatttca gagataagag ggggactata tgaaaatatt aatagctatg
     9961 gatgaattta accatattat ttcgagttat gacgcgaatc gctatgtaga agaaggtgtg
    10021 gcgagtcaaa ttgaggatgc agatattgta caagtcccac tatttaatgg gagaagagag
    10081 ttattaaatg ccgtcttttt gtggaaatct gggacacaat atcaaattcc cgtacacgat
    10141 gcggcgatgc aagctgtaga cgccacgtac ggtcagacag atgatggcat taccgttata
    10201 gaagcggggc aatttttaaa agggacgtta ccacttgtag aacagtcaag ctatggtgta
    10261 ggtgaagtga tgcgtcatgc cttggataaa aatgcgcaac atatgattat ttcagtaggt
    10321 gctatcgata catttgatgg tggcgcaggg atgttacaag ctttaggtgc acagttttat
    10381 gacgatgaag ggcgtaccgt cgacatgaca aaaggtggcg gccaaattaa acacgtgcgt
    10441 cgtattgatc tagaagattt acatgaaggt ttgaaacagt gtcgaattca gattgtgaca
    10501 gattttgaga gtaagctata cggcaaacag agtgcagtca tgaagactta tccaaatctt
    10561 caaatcgacc gagaagaggc agtggtgatt gataatttgc tttggtattg gagtgaattg
    10621 tttaaacatc agcatcatat cgtgttaggt acggttgaaa gaggtggtgc aggtggcggt
    10681 atcgcagcaa cgttacacgc attatttaaa gctgaaattc aaacgagtca tgaattagtt
    10741 gatcaaatta caggattgaa tgcattagtg aaacaagcgg acttagttgt atttggtgaa
    10801 ggcatagatg aacaagacga aatgattgaa acgtcttcac taagaattgc tgaactatgc
    10861 caacaatatg ataagccggc tattgcacta tgtggtacag cggacaaatt cgaacgattc
    10921 gaagcattag gcgtgacagg gatgttcaac acgtttattg atatgccgaa aacattaact
    10981 gacttcaaaa tggggataca gttaagaaat tatgccgtac aagccattcg attgttacgg
    11041 acatcgttta attaacgaga ggacatgaat taaaaaggac agagactggg aatgtttgaa
    11101 aaagttccca gtctct
//
LOCUS       DANHOL010000077        11107 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.077, whole genome shotgun sequence.
ACCESSION   DANHOL010000077 DANHOL010000000
VERSION     DANHOL010000077.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 11107)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11107)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11107
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.077"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(44..547)
                     /locus_tag="PTC08_001488"
     CDS             complement(44..547)
                     /locus_tag="PTC08_001488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC domain-containing protein"
                     /protein_id="HDK5682997.1"
                     /translation="MKHMQNEWVEIELVRLMKTTPLNAYHAWLDPNQLIHWFMTSRRT
                     NQVIENDPVEGGHYQIVDLRKGKRIEVIGTYKTLKEGEQIVKTIQMPELSEHVDEIEV
                     YFEERSPGMTEMTFHYRGMLPKERRLTNLEYKQQKKAYHDHTAHGFELMFDVLQRELE
                     AEFELNE"
     gene            complement(658..1959)
                     /locus_tag="PTC08_001489"
     CDS             complement(658..1959)
                     /locus_tag="PTC08_001489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaC family protein"
                     /protein_id="HDK5682998.1"
                     /translation="MLEQEHEHSSPWALIPLVVFISIFLGAGIITKDFTFMPLNVAAI
                     IGVVVALMMNRRETFMSKVEVFARQAGHANIVLMMFIFLLAGAFSKTTEAMGGVTSIV
                     NLGLSFIPQNFLIVGLFIICMFISISMGTSVGTVAAIAPVGFGISEATEIPAAFAMAT
                     VVGGAMFGDNLSMISDTTIAAVRTQKTQMSDKFKVNFRIVVPGAIVTIFVLWWLSHGY
                     DVTQTKTYDFEWVKVVPYLLVLILAVIGINVVLVLLGGILLSSLIGLIDGSFDLGGLL
                     KAASEGVLGMQDIAMIALLIGGMIGLVEHHGGITWLLNFVKQRVKTRRGAELGIASLV
                     SVADISTANNTISIIMAGPLAKDIAEEYDIDPRKSASLLDIFGSAFQGFVPYSPQLIA
                     AAGVASISPVTLLPYSIYPVMLAICGIIAILFNLPRLRSHR"
     gene            complement(2122..3258)
                     /locus_tag="PTC08_001490"
     CDS             complement(2122..3258)
                     /locus_tag="PTC08_001490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M20 peptidase aminoacylase family protein"
                     /protein_id="HDK5682999.1"
                     /translation="MAADLKQLIEWRRWFHQNPELSNEEIQTTARLREILESYDIRIL
                     DLPLKVGLIAEVGQGEEMIAIRSDIDALPINEKTNLAYQSQNDNVMHACGHDIHMASI
                     LGTAVKLKEMESELPGRVRIIFQSAEETGDGAPAVVQTGALDGALAILGFHNAPMIKV
                     GEWRAKSGHLTSNVDRFNIRIQGRGAHAAMPQDSVDPQIVLGQLILSLQTIVSRNIAP
                     YEEAVVTIGQIHSGHTWNVIPQEAMVEGTVRSFKADIRDQVEDRMTQICEGLEKQFNV
                     KIDLDYHRLTASVINDETLQNLALEVAQSVGYETEVLPRALTIGEDFSGYQAVAPVHF
                     AMIGSDSEYPLHHEQFQPNEQILVKVPDYFIVFIQRLWDEHLRR"
     gene            complement(3248..4444)
                     /locus_tag="PTC08_001491"
     CDS             complement(3248..4444)
                     /locus_tag="PTC08_001491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SulP family inorganic anion transporter"
                     /protein_id="HDK5683000.1"
                     /translation="MEMHHTIQNYLTSWRGHTFQNITAGLLVALAMVPGAIAFSFIAG
                     VSPTVGIFSTALMLIGISFLGSRTLMVSSPSSGVSIVAVLITSMYGQQMLVAAMLIMG
                     IFQIIFAFCRVDKAIHKIPVPVVVGFMNALAYLLFTSQLKHILGHNLSTYLFAVLSLI
                     MIFFIPHITERIPAALIMIVVLSIAAKMFHVDLMVVQDLAYIQFEMPTLGLPQVDLTG
                     WIVVELIIFGLMLAIVATIQTSLTARMVDQLTKTASSLNRESFGQGLTNFIICLFGGL
                     AGSALVGQSKYNLKLGATSRLSTLAAGIVMLLFLVLLSPLVGNIPMVVLAIVLTRIAM
                     NAFDRQTLRYIVERRWTEFMIMLITFLLIVTAHNLALGVVVGTAVYYSYQRIQKFRKG
                     RDQHGS"
     gene            complement(4972..6213)
                     /locus_tag="PTC08_001492"
     CDS             complement(4972..6213)
                     /locus_tag="PTC08_001492"
                     /EC_number="3.5.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazolonepropionase"
                     /protein_id="HDK5683001.1"
                     /translation="MTYDLLIQNIKELILPVTTERPLKGKDLDELNVVKHGTVVVHEG
                     KIVYAGPYTEDYEARNTIDASDRVVSPALVDAHTHLVHGGSREHEMALKRQGKSYLEI
                     LESGGGILSTVEATRQATEDELFKKAEYDLLTMVHHGVLAVESKSGYGLNKENELKQL
                     RVSKRLEEKYGLKMRHTFLGPHAIPKEASSQADFLQEMIDLLPEAKKYADFADIFCET
                     GVFTLEESKRYMEAAKELGLRVKIHADEIDPLGGLGLAIEEDAISADHLVASSDKDKA
                     NLKDSDTVAVLLPGTTFYLDKESYADARGMLDNNGAIAIATDYNPGSCVTNNLQMVMA
                     IASLKLKLSPAETWNAVTVNAAKAIDVDAGTINEGDDANIVIWRAPNHEYIPYHYGVN
                     HVEKVIQNGRVIVDRQPQLLT"
     gene            complement(6210..7874)
                     /gene="hutU"
                     /locus_tag="PTC08_001493"
     CDS             complement(6210..7874)
                     /gene="hutU"
                     /locus_tag="PTC08_001493"
                     /EC_number="4.2.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002506874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="urocanate hydratase"
                     /protein_id="HDK5683002.1"
                     /translation="MRNIQAKKGLEIECKGWEQEAVLRMLYNNLDPEVAEHPERLVVY
                     GGIGKAARNWEAFDAIVDTLRRLENDETMLVQSGKPVAVFKTHEEAPRVLLSNSVLVP
                     KWATWDHFHELDKKGLMMYGQMTAGSWIYIGSQGIVQGTYETFAELANQHFNGSLKGT
                     ITLTAGLGGMGGAQPLAVTMNGGVVIGVDVDPTRIQKRIDTRYCDTITHSLDEALEKA
                     EKAKKEGRAIAIGLVGNAAEVHHEILKRGFKIDIVTDQTSAHDPLNGYVPEGYSLEEA
                     ASLRDNDPAKYVTLSKRSMKKHVEAMLQFQKNGAIAFDYGNNIRQVAFDEGLENAFDF
                     PGFVPAYIRPLFCEGKGPFRFAALSGDPKDIERADQLMRELFPEDEKLMRWLDMASEK
                     IAFQGLPSRIAWLGYGERVKMGLALNELVRTGEISAPIVIGRDHLDSGSVASPNRETE
                     AMLDGSDAVGDWAILNALINTAAGGSWISVHHGGGVGMGYSLHAGMVVVADGSERADR
                     RLGRVLTTDPGMGVVRHADAGYEKAIETAKTRGVDMPMITKEVETE"
     gene            complement(7896..9200)
                     /locus_tag="PTC08_001494"
     CDS             complement(7896..9200)
                     /locus_tag="PTC08_001494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjiH family protein"
                     /protein_id="HDK5683003.1"
                     /translation="MKHQTVKGNQMWRFWVLSSIGVICFFVPFQINGVQTIIVDHVHL
                     AIRAGLKSVMPYIALTMILIGAILPIYRKDYRKTKTDFVIVLAKVLGAVIGVMYVFHI
                     GPKILFEVQYGPFLFDKLMLPLSILIPVGAIALSLLVGYGLLEFIGVLMQPIMRKVFN
                     TPGESAIDAVASFVGSYSLGLLITNRVYKQGVYNYREALIIATGFSTVSATFMVIVAR
                     TLDLMAHWNLYFWSCLVITFVVTAISTYLPPISKASKAYYNNQQPPTKPKEEGTRIQQ
                     AWLAVKRQSHQATPLFKNMWTHFAEGLEMTVAILPSILSIGFIGLLLANFTPVIDILS
                     YIFYPFIYIFPIAEKALLAKASAISVIEMFLPSLLVVKATIEVKFVVAITSVSAIIFF
                     SALVPCILATEIKVPIWQLLLIWFVRVTITLLITIPLSLIIF"
     gene            9400..10281
                     /locus_tag="PTC08_001495"
     CDS             9400..10281
                     /locus_tag="PTC08_001495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDK5683004.1"
                     /translation="MKVIQLEYFIEIVHQNSFTKAAQALHISQPSLTATIKKMERDLG
                     YQLLKRTTKEISITEKGIQFYNEAVELVKHYHQSIEKMYDLKMSQTPKIKMAIIESTA
                     RWVSTVIQTHQNAHPEQHYQITEILDPNQLAQKLINFDVHLGLSNDQIRHDGIISLPL
                     YQEDYVVLTPQNAFGNQKSVSIKNLPLIVPNRGYQVRKHIDDYFTRLDERPHIIMEVD
                     RFETATNFVHQGMGYAVIPQMYYQSYSTFQLSAIKIRPNIKRTIYLNYSKKREYNQHV
                     FNLVDACCEYWNIERKV"
     gene            complement(10470..>11107)
                     /locus_tag="PTC08_001496"
     CDS             complement(10470..>11107)
                     /locus_tag="PTC08_001496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease"
                     /protein_id="HDK5683005.1"
                     /translation="LIAFTLPLIIFMIGMYVFNTYADSFILLQSKDLSETIWTILIGH
                     ILMAFFIEFGFRSYLLNMVEIKLPHFFSNIVVSVLYLIWDVNTAFGMPYTMYSAIYVF
                     AFSMIAGELVRGTGGRSIYVATLFHASMTFAKVFFFSEEIGDVFSMKVLAYSTASVAI
                     VVVVLGLIMRLFSPRKKGEDDDTPMLMDTTTEDEKVETEQEVEVAPTKEEK"
BASE COUNT         3360 a         2466 c         1982 g         3299 t
ORIGIN      
        1 cggcacagcg cacttgcctg taccgtttat tcttcatcta ttcttattca ttcaattcaa
       61 attctgcttc taattcacgt tgcaacacat caaacatcaa ttcaaaacca tgtgctgtat
      121 ggtcgtgata agctttcttt tgttgcttat attcaaggtt ggtcaatcgg cgttctttag
      181 gcaacatacc tctataatga aacgtcatct cagtcatccc cggtgatcgt tcttcaaaat
      241 agacttcaat ctcatcaaca tgttcactca attccggcat ctgaatcgtt ttcacaattt
      301 gctcgccttc ttttaacgtt ttatacgtgc cgatgacttc aatacgtttc cctttacgta
      361 aatcgacaat ttggtaatga cctccttcaa caggatcatt ttcgataact tggtttgttc
      421 ggcgtgaagt cataaaccaa tgtattaatt gattagggtc tagccacgca tgatacgcat
      481 tcaaaggtgt cgttttcatc aaacggacaa gctctatttc tacccattca ttttgcatat
      541 gcttcacttc cattctcctt actttttatt catttcggat gacctctatt gtaacttaaa
      601 tctatcaaga actaaatgaa ggtgtgtttt tatgactgtg attcactcta aaaccaatta
      661 gcgatgagaa cgtaagcgcg gtagattaaa cagaatggcg ataatcccac aaatcgcaag
      721 catcacaggg taaatggaat acggcaacaa cgtcacaggt gaaatgctcg ctacaccggc
      781 tgctgcaatg agctgtggac tataaggaac aaagccttga aatgcactgc caaatatatc
      841 taacaaactc gccgattttc tcggatcaat atcatattct tccgcaatgt ccttcgcaag
      901 tggacctgcc ataataatcg aaatcgtatt attcgctgtc gaaatatcag caacactgac
      961 aaggctcgcg atacctagtt ctgcaccacg tcgtgtttta acgcgttgtt taacgaaatt
     1021 taacagccat gtaatccccc cgtgatgttc aacgagacct atcataccac cgatgagtaa
     1081 tgcaatcatc gcaatgtctt gcataccaag aacgccttct gacgctgctt tcaataggcc
     1141 tcctaagtca aatgaaccat caatcaagcc aattagagac gataacaaaa tgcctcctaa
     1201 caacactaac acaacgttaa taccgataac cgccaaaatt aatacgagta agtacggaac
     1261 cactttaacc cattcgaagt cgtacgtttt cgtttgtgtc acatcataac cgtgagaaag
     1321 ccaccataaa acgaaaatcg tgacgatagc acccggcaca acgatacgaa agttcacttt
     1381 aaatttatcg ctcatttgcg tcttttgcgt gcggactgcg gcaatcgttg tatctgaaat
     1441 catggacaag ttatcgccaa acattgcacc accaaccact gtcgccatcg caaatgcagc
     1501 agggatttct gttgcttcac taataccgaa tcccacaggt gcaatcgctg ctacagtccc
     1561 taccgacgtc cccatcgaaa tagaaataaa catacaaatg ataaaaagtc cgacgatcaa
     1621 gaaattttgc gggataaatg ataaccctaa attgacaatg gaagtcacac cgcccatcgc
     1681 ttcagttgtt tttgaaaagg cccctgcaag caaaaagata aacatcatca acacaatatt
     1741 agcgtgtcct gcttgacgtg caaaaacttc tacctttgac ataaatgttt cgcgtcggtt
     1801 catcattaac gccacaacga caccgataat cgcggcaaca tttaacggca taaaagtaaa
     1861 gtctttcgtg atgatacctg cacctaaaaa gatactaata aatacgacta acggaatgag
     1921 cgcccatgga ctactgtgct catgctcttg ttctaacata aaaaatctcc ttaacgaaaa
     1981 gcaaatcacc tgtttgaata tgtgtgatct acttgtcctt cactttattt ttatatcttt
     2041 tataaaagca aaaaatcatt tttaatgaca tttgaaaaat tgaattttac tgttaaacaa
     2101 tacatgaaaa cattgtgacc gtcaacgcct taaatgttca tcccataaac gctgaatgaa
     2161 cacaataaaa taatcaggta ctttaactaa aatttgttcg ttcggctgga attgttcgtg
     2221 atgcagtggg tattcactgt ctgagccaat catcgcaaaa tgaacaggtg ccacagcttg
     2281 ataacctgag aaatcttcac ctatcgttag tgcgcgcggt aacacttctg tctcataacc
     2341 gactgattgt gccacttcca acgctaaatt ttgtaacgtt tcatcattga tgacagaggc
     2401 agttaaacgg tgataatcca aatcaatctt cacattaaac tgtttttcta atccttcaca
     2461 aatttgggtc attctgtctt caacttggtc acgaatatct gctttaaaac tgcgaactgt
     2521 cccttctacc atcgcttctt gagggataac attccacgta tgaccgctat gaatttgacc
     2581 tatcgtgacg accgcttcct cataaggcgc aatgttgcga ctcacgatcg tttgtaagct
     2641 taaaataagt tgtcctaaga cgatttgcgg gtctactgaa tcttgaggca ttgctgcgtg
     2701 cgcgcctcga ccttgaatac gaatgttgaa acgatcgaca tttgacgtta aatgccccga
     2761 ttttgcacgc cattcaccga cttttatcat tggtgcattg tggaagccaa gaatcgctaa
     2821 cgccccatct aatgcgcctg tctgaacgac agcgggtgcc ccatcacctg tttcttcagc
     2881 agattggaaa ataatacgga cacgtcccgg caattctgat tccatctctt tcaatttcac
     2941 tgctgtaccg agaatagaag ccatatgaat atcgtgacca cacgcatgca tcacattatc
     3001 attttgtgat tgatacgcta agtttgtttt ttcattaatg ggtaacgcgt caatgtctga
     3061 gcgaatcgca atcatttctt ccccttgccc tacttctgcg ataagcccga cctttaacgg
     3121 taagtcgagt attcgaatat cgtaactttc taaaatttct cgtaaccgtg ctgttgtttg
     3181 aatttcttca ttggaaagtt ctggattttg atgaaaccat cttctccatt caattaattg
     3241 ttttaaatca gctgccatgt tgatcccttc cttttcgaaa tttttgaatc cgttgataac
     3301 tataataaac cgctgtgccg acgactaccc cgagtgctaa attatgcgcg gtgacaatca
     3361 ataaaaaagt aatgagcata atcatgaatt ctgtccaacg tcgctcgaca atataccgca
     3421 atgtttgacg gtcaaaagcg ttcatcgcaa tacgtgtcaa aacgatagct aacacgacca
     3481 taggaatgtt gccgacgagt ggacttaata acactaaaaa taacaacatc acgatacctg
     3541 ctgccaaagt tgaaagtcgt gacgttgcac ctaatttgag gttatacttc gactgtccca
     3601 ctaacgcact tcccgcaagc cccccaaata aacaaatgat gaaatttgta agcccttgac
     3661 caaatgattc acgattgaga ctgctagcgg tttttgttag ctgatcgacc attcgcgctg
     3721 ttaaactcgt ttgaattgtt gcgacaattg ctaacattag gccaaaaatg attagttcta
     3781 caactatcca ccctgttaaa tcaacttgag gtaacccgag cgttggcatt tcgaattgga
     3841 tatacgctaa atcttgtacg accattaagt cgacatgaaa cattttggcc gcgatggata
     3901 aaacgacaat cataatgagt gcagcaggga tacgttctgt gatatgcgga atgaaaaata
     3961 tcatgattaa actgagcact gcaaagaggt atgtcgatag attgtgaccc aaaatatgtt
     4021 ttagttgcga ggtaaataat aaataagcta acgcattcat aaatccaaca acgaccggta
     4081 ctggaatttt atgtatcgct ttatccacac gacaaaatgc gaatatgatt tgaaatatgc
     4141 ccatgatgag catcgctgca acgagcatct gctggccata cattgaggtg attaacacag
     4201 cgacaatgga gaccccacta ctcggtgaag aaaccattaa tgtgcgggaa cctaaaaaac
     4261 tgattccgat gagcatgagt gcggtactga atatgccgac tgttgggcta acgccagcga
     4321 taaatgaaaa tgcgatagca cctggtacca tagctagagc aaccagtaag cctgctgtga
     4381 tgttttggaa agtgtgtcct ctccagcttg tgaggtaatt ttggattgtg tgatgcatct
     4441 ccatcccccc gactccctta tattgcatta tattatatca aagcaatcgg gatttgttga
     4501 ttattttagg ttttgggtga tggttttgat acatggttgt tatgtttaca attgcgttga
     4561 gcataatcta acgattgctt aaaccgtgct gcgctttccg agccgctgaa actccaactc
     4621 aattcggctc gattgggatg tgcacctggt ggaagccgaa ttgaattttc cgtttcagct
     4681 catacctcag gagtcttgca cagtttcggc aatcgtatcg ttacagtatt gttattcagc
     4741 gttccaaaaa acttcacgct ttatgggaaa gagtgagatt ggacttgcct gaactaaatt
     4801 tggcttgatt aaaatgtaca cttgatggta gccaaattgg attttgggag aagtcaacgg
     4861 cgtcgtttct gttcctatca tattcagcgc gtgctgcatt tcacaaaaag atgaagcgga
     4921 tggcaacctc ttatacaagg tatttacccg cttcgtttat tgtcattatg cttatgttaa
     4981 tagttgtggt tggcggtcaa cgatgacacg tccgttttga atgacttttt caacatggtt
     5041 cacaccgtaa tgatacggaa tgtattcatg gttaggtgcg cgccaaatga cgatattcgc
     5101 atcgtcgcct tcgttaatcg tacccgcgtc cacatcgatg gcttttgctg cattgactgt
     5161 gactgcgttc caagtttcgg ctggtgataa ttttaatttt aatgatgcaa tcgccatcac
     5221 catttgtaaa ttgtttgtga cacagctacc tgggttgtag tctgtcgcaa tcgcaatggc
     5281 accgttattg tctaacatgc cgcgagcgtc tgcataactt tctttgtcca agtagaacgt
     5341 tgtgcctggt aataataccg ctactgtgtc agaatctttt aagttcgctt tgtctttatc
     5401 acttgatgca acgaggtgat ctgcagaaat ggcatcttct tcaatcgcta agcctaaacc
     5461 accgagtgga tcgatttcat ctgcatgaat tttcactctt aagcccagtt ctttcgctgc
     5521 ttccatataa cgttttgatt cttctaacgt aaatacaccc gtttcacaga aaatatctgc
     5581 aaagtctgcg tattttttcg cttctggtaa taaatcaatc atttcttgta agaagtctgc
     5641 ttgtgacgat gcttcttttg gaatagcatg tggtcctaaa aaagtatgac gcattttcaa
     5701 accatatttt tcttctaaac gtttagaaac gcgcaattgt ttcaattcgt tttctttgtt
     5761 taagccgtat ccacttttac tttctacagc taatacacca tgatgcacca tcgttaataa
     5821 atcatattca gcctttttaa atagttcatc ttcggtcgct tggcgtgtcg cttctactgt
     5881 tgataaaata ccgccacctg attcaagtat ttctaaatat gatttgcctt gacgttttaa
     5941 cgccatttcg tgttcacgtg agccaccatg aactaaatgt gtgtgtgcgt caacaagcgc
     6001 gggtgaaaca acgcggtcag aagcatcaat tgtgttgcgt gcttcgtagt cttcagtata
     6061 aggccctgca tagacaattt tcccttcatg taccacgact gtaccgtgct tgacaacatt
     6121 taattcatcc aaatctttac cttttaaagg gcgctctgtc gttactggta aaatcaattc
     6181 tttaatattt tgaatcagta aatcataagt cattctgttt ctacctcctt agtgatcata
     6241 ggcatatcaa cgccacgagt tttggcagtt tcaatcgctt tttcatagcc cgcatctgca
     6301 tgtcgcacta cacccatacc cggatctgtc gttaatacac gtcctaatct tctgtctgca
     6361 cgttctgaac catctgcaac aactaccatg cctgcgtgta atgaatagcc catacctacg
     6421 ccgcccccat ggtgaactga aatccatgaa cctccagctg ctgtgttaat taaagcattt
     6481 aaaattgccc agtcccctac agcatctgaa ccgtctaaca tcgcttcagt ttcacggttt
     6541 ggcgatgcta ctgaacctga atctaaatgg tcacgaccga taacgattgg tgcagaaatt
     6601 tcgccagtac gcacaagttc atttaaggct aagcccattt ttacacgttc gccatagccg
     6661 agccatgcga ttcttgacgg aagcccttgg aatgcgattt tttcacttgc catatctagc
     6721 caacgcatta atttttcatc ttctgggaat aattcacgca ttaattggtc cgcacgttca
     6781 atatcttttg gatctccaga taatgctgcg aaacggaatg gtcctttacc ttcacagaat
     6841 aacgggcgaa tatatgccgg tacgaaacct gggaaatcaa atgcgttttc taagccttca
     6901 tcaaatgcga cttggcgaat attgttacca tagtcgaatg caatcgcacc atttttttgg
     6961 aattgtaaca ttgcttcaac gtgttttttc atagatcgtt ttgataatgt gacatacttt
     7021 gcaggatcat tatctcttaa tgatgccgct tcttctaaac tatacccttc aggcacataa
     7081 ccattaagtg gatcgtgagc agatgtttgg tccgtcacaa tatcaatttt gaagccacgt
     7141 tttaaaattt cgtgatggac ttccgccgcg ttaccgacta atccaattgc aatggcacgc
     7201 ccttcttttt tcgctttctc agctttttct aaagcttcat ctaatgaatg tgtaatcgtg
     7261 tcacagtaac gcgtgtcgat acgtttttga atacgtgttg ggtcaacatc tacgccaata
     7321 acgacaccgc cattcatcgt aacagcaagc ggttgtgctc cacccatacc gcctaatcca
     7381 gcagttaatg taattgtacc ttttaatgag ccattgaaat gttgattcgc taattccgca
     7441 aaagtttcgt acgtaccttg cacaatacct tgtgaaccaa tgtaaatcca actacccgct
     7501 gtcatttggc cgtacatcat taagcccttt ttatctaatt catggaaatg atcccaagtt
     7561 gcccattttg gtacgagcac agagtttgat aaaagtacac gtggtgcttc ttcatgcgtt
     7621 ttaaatacag caacaggttt accagattgc actaacattg tctcatcatt ttctaagcga
     7681 cgtaatgtat cgacaatcgc atcaaatgct tcccagttac gcgctgcttt accaatgcca
     7741 ccataaacga caagacgttc cggatgttca gctacttccg gatctaagtt gttgtacaac
     7801 attcgtaaaa ctgcttcttg ttcccaacct ttacattcga tttctaaacc tttttttgct
     7861 tgaatatttc tcaccataag acttctccct ttcatttaaa aaataattag acttaacgga
     7921 atagtaatta ataaagttat tgtcacacgc acaaaccaaa tcaataacaa ttgccaaatc
     7981 ggaactttaa tttctgtagc taaaatacac ggtacaagcg ctgaaaagaa tataattgct
     8041 gatacactcg taattgccac tacaaattta acttcaatcg ttgctttaac gacaagtaac
     8101 gatggtaaaa acatttcaat gaccgatatt gcagacgcct tcgctaataa tgctttttct
     8161 gcaatcggaa aaatataaat aaatggataa aaaatgtaac tcagtatgtc aataaccggt
     8221 gtaaagttcg ctaacaataa accaataaaa ccaatcgata aaatggacgg taatatcgcg
     8281 actgtcattt cgagcccttc agcaaaatga gtccacatat ttttaaacaa tggtgtcgct
     8341 tgatgtgatt gtcttttcac tgcgagccat gcttgttgaa tacgtgtgcc ttcttcttta
     8401 ggttttgtag gtggctgttg attgttatag taggctttcg acgcttttga aatcggcggc
     8461 aaatatgtcg aaatagctgt cacaacgaat gtgatgacta aacagctcca gaaatacaaa
     8521 ttccaatgtg ccattaaatc aagtgtacgt gccacgatga ccataaatgt tgccgatact
     8581 gtcgaaaatc ctgtcgcaat gattaatgct tctcggtagt tgtaaacacc ttgtttatac
     8641 acacgatttg taattaacag accgagcgaa taactcccta caaacgacgc gaccgcatca
     8701 atcgcggatt cacctggcgt attaaacact ttgcgcatga tgggttgcat taacacaccg
     8761 ataaactcca gcaagccata tcctactaac aatgataaag cgatggcacc gactggaatt
     8821 aaaatgctta gtggcaacat caatttatcg aacaaaaacg gtccatattg tacttcaaac
     8881 aaaattttcg gtccaatatg aaacacgtac ataacgccga tcacagcccc taaaacttta
     8941 gccaaaacaa tgacaaaatc ggtcttcgtt ttccgataat ctttacgata gattggtaaa
     9001 attgcgccaa ttaaaatcat ggttagagca atataaggca tcacactttt gaggcctgcg
     9061 cgtattgcta aatgaacatg atcgacaata atcgtttgta ccccgttaat ttgaaaaggt
     9121 acaaagaaac aaatcacacc tatcgaactt aaaacccaaa aacgccacat ctggttaccc
     9181 ttaacagttt gatgtttcat cccaacattt ctcccccttt gcgttgtgaa tcctacacaa
     9241 aataacgacc tctcccctta gtcttgcttt atttttcatt attctgtcat ttgattatgc
     9301 gctgttactg actaactcta ttgtaatatg ctaagctatt aataactaat ataaataaac
     9361 taatcactta tagcttcaaa ctataataag gaggccataa tgaaagtaat ccagttagaa
     9421 tactttatcg aaatcgtgca tcaaaatagc ttcacaaaag ctgcgcaagc tttacacatt
     9481 agccaacctt cattgaccgc aacgattaaa aaaatggaac gtgatttagg gtatcaactg
     9541 ttaaaaagaa caacgaaaga aatttcaatc accgaaaaag gcattcagtt ttataacgaa
     9601 gcagtggaac ttgtgaaaca ttatcatcag tccattgaaa aaatgtatga tttaaaaatg
     9661 agtcaaaccc ctaaaattaa aatggccatc attgaatcca ctgcgcgttg ggtatcgacg
     9721 gttatacaaa cacatcaaaa tgctcatcca gagcaacatt atcaaatcac ggaaatatta
     9781 gatcctaacc aattggcaca aaaattgatt aactttgatg ttcacttagg cttatcgaac
     9841 gaccaaattc gtcacgacgg aatcatctca ctcccgttat atcaagaaga ttatgttgtg
     9901 ctcacgccac agaatgcctt tggaaatcaa aaatcagtgt cgattaaaaa cttacctctc
     9961 atcgttccta accgtggcta tcaagttcgt aaacatatcg atgactattt tacacgctta
    10021 gatgaacgcc cccatatcat catggaagtg gaccgttttg aaacagcgac caactttgta
    10081 catcaaggta tgggttatgc agttatccca caaatgtatt atcagtcata ttcaacattt
    10141 caactgagtg cgattaaaat tcgtcctaac attaaaagaa cgatttatct gaattactca
    10201 aaaaaacgcg aatacaatca acacgtcttt aatttagtcg atgcatgttg tgaatattgg
    10261 aacatcgaaa ggaaagtata aaagggtggt agcgggaatt taattgaaat caatcagtgg
    10321 agaagaacaa ggtggcagac gaaacggaca catgagaagt cgagtcagtc ttgcagggac
    10381 agtacgacga aatttttgtt gcataggaaa tttttggaca gctccccaaa taaaaaacac
    10441 ccctatatta agaggtgttc ttcaaaaagt tatttctctt cttttgttgg tgctacttca
    10501 acttcttgct cagtttctac tttttcatct tctgtcgtcg tatccattaa catgggtgta
    10561 tcatcgtctt cccctttttt gcgaggagag aataaacgca tgattaaacc taatacaaca
    10621 acgacaattg cgacactagc cgttgaataa gccaatactt tcatggagaa gacatcgcca
    10681 atttcttcgc tgaaaaagaa cacttttgcg aatgtcatac ttgcatgaaa caatgttgcc
    10741 acgtaaatcg aacgaccacc tgtaccacgc actaattcac ctgcgatcat cgaaaacgca
    10801 aagacgtaaa tggcactgta catcgtgtaa ggcataccga aagccgtatt gacatcccaa
    10861 attaaataca acacactcac tacaatattt gagaaaaagt gcggtaattt gatttcaacc
    10921 atatttaaaa gataagaacg aaatccaaat tcaatgaaaa aagccatgag tatatgacca
    10981 attaaaatcg tccaaatcgt ttcggataaa tctttagact gtaataaaat aaagctgtcg
    11041 gcatacgtgt taaaaacata catgccaatc ataaaaataa tgagcggtaa cgtaaaagca
    11101 atcaaca
//
LOCUS       DANHOL010000078        11098 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.078, whole genome shotgun sequence.
ACCESSION   DANHOL010000078 DANHOL010000000
VERSION     DANHOL010000078.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 11098)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11098)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11098
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.078"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(76..1254)
                     /locus_tag="PTC08_001497"
     CDS             complement(76..1254)
                     /locus_tag="PTC08_001497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NarK/NasA family nitrate transporter"
                     /protein_id="HDK5683006.1"
                     /translation="MNQSKGGVQLALQTLSLVAGFMAWSIIAPLIPFISQDIKISSGQ
                     LSIILAIPVILGSVLRVPFGYLTNIVGAKWVFFTSFIVLLVPIFLLSQAGSPGALMFA
                     GFFLGVGGAIFSVGVTSLPKYFSKDKVGLANGIYGMGNLGTAVSSFLAPPIAGVIGWQ
                     NTVRSYLIVMAVFAIIMFFLGDNKEPKVKVPLVEQTRILMKNYKLYYLSLWYFITFGS
                     FVAFGLFLPNFLVQNFGIDKVDAGIRTGVFIALATCLRPLGGILGDKFNAVTMLKIFF
                     SIMIAGAFILGVSSQISLFTIGCLTVSVCAGIGNGLVFKLVPHYFTKEAGVANGIVSM
                     MGGLGGFFPPLVISAVTSITGTSHFAFILLCVFGLIALVTMFNLSKREKAAANKATVS
                     "
     gene            complement(2313..2963)
                     /gene="nreC"
                     /locus_tag="PTC08_001498"
     CDS             complement(2313..2963)
                     /gene="nreC"
                     /locus_tag="PTC08_001498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002464689.1"
                     /note="Involved in the regulation of the the nitrate
                     reductase operon narGHJI; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate respiration regulation response
                     regulator NreC"
                     /protein_id="HDK5683007.1"
                     /translation="MRIVIADDHAVVRTGFSMILNFQEDMEVVGTAADGVEAYQKVME
                     HAPDVLIMDLSMPPGESGLIATSKILDSFPNTKILILTMYDDEEYLFHVLRSGASGYI
                     LKNAPDEQLLLAIRTVYQGETYIDPKMTTSLVKEFVHSSNDGEYSNDPFKVLSKRELE
                     ILPLIAKGYGNKDIAEKLFVSVKTVEAHKTRIMDKLNLKSKPELVEYALKKKLLDF"
     gene            complement(2982..4016)
                     /locus_tag="PTC08_001499"
     CDS             complement(2982..4016)
                     /locus_tag="PTC08_001499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HDK5683008.1"
                     /translation="MPQQQTELLNFLQAYYHQTSEMIIFIDAQGQVIDMNEAAKRVIS
                     SDNDMSGISTTICGRCEGYTNEHALRTCQNCFLQSSEIGDTTFQVFMKTTNNKIEPFT
                     ATYQTIDEERQIKAFTLQNVTAQLQRQEKLYQRNMIQKTIAAQENERKRISRELHDGV
                     VQELININVEMRLLKYQNDMDVLLSNAKNIEGLMTKLIDDLRNLSSELRPSTLDDLGL
                     DAAFKTYFKQIENNYGLAINYHFDIDSERFDAEIETVVYRIVQEAVFNAMKYADIDDV
                     DVIIRKDDHYLYAEVSDQGRGFEPSDSPKGTGLGLYGMYERAELVNGKLNIETQKGKG
                     TIVSLEVPIS"
     gene            complement(4016..4477)
                     /gene="nreA"
                     /locus_tag="PTC08_001500"
     CDS             complement(4016..4477)
                     /gene="nreA"
                     /locus_tag="PTC08_001500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate respiration regulation accessory nitrate
                     sensor NreA"
                     /protein_id="HDK5683009.1"
                     /translation="MNQIDFSQHDYQDEIDRLRHEYQFDFAGIALPSEDHVGMKIKWR
                     YVSGNLNERYRRIVLRNGHGIAGNVMKTGKPMIIPDTTDDAIQNTLFDYPILMSEQLT
                     ALIAIPLWHNHRVKGVLLLGQRNQKPLPHLAKDISSIKSVGSLTSEDKVMQ"
     gene            complement(4493..5170)
                     /gene="narI"
                     /locus_tag="PTC08_001501"
     CDS             complement(4493..5170)
                     /gene="narI"
                     /locus_tag="PTC08_001501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="respiratory nitrate reductase subunit gamma"
                     /protein_id="HDK5683010.1"
                     /translation="MFNQFLWVIFPYLCLAVFVIGHIARYRYDQFSWTAKSSEFIEKK
                     QLKWGSLLFHLGVIPVFFGHVVGLLIPAHWLEAVGVNNHIYHIGAVYIGSIFGIITLI
                     GMFLLTARRITKQNVRRLSSASDIFVNFLLLLIVFVGCYATLVTNATTPEFDYRQTIS
                     IWFRALFTLSPDANLMTEVPLAFQLHVLLGFTIMACWPFTRLVHVWSVPVTYASRSYI
                     IYRKHKI"
     gene            complement(5163..5738)
                     /locus_tag="PTC08_001502"
     CDS             complement(5163..5738)
                     /locus_tag="PTC08_001502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone TorD family protein"
                     /protein_id="HDK5683011.1"
                     /translation="MINLHMLDTYKDTFGYMSQQLSFPEKLTFHPKTFEEVFDETHPA
                     YPHVVAYREAMYEKSLSEIQAFYTDTFDFNEKATLYMTYNQLDTQKERGQMLAKLKVL
                     YEMFGLEMPASELSDYLPLMLEFLYAARFDGDTRAQENVQLVIMIIEDGTYAMMKHLE
                     SEHNPYAHLIRGLRETFKHCIVQDKEVTHHV"
     gene            complement(5731..7287)
                     /gene="narH"
                     /locus_tag="PTC08_001503"
     CDS             complement(5731..7287)
                     /gene="narH"
                     /locus_tag="PTC08_001503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009384084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase subunit beta"
                     /protein_id="HDK5683012.1"
                     /translation="MKIKAQVAMVLNLDKCIGCHTCSVTCKSTWTNRPGAEYMWFNNV
                     ETKPGIGYPKRWEDQETYKGGWVLNKKGKLELKSGTRLNKIALGKIFYNPDMPVIQDY
                     YEPWTYNYEHLTKAKPSQHTPVAKAHSVMTGQRMDLDWGPNWEDDLAGGHITGPQDPN
                     IQKIEEEIKFNFDQTFMMYLPRLCEHCLNPSCVASCPSGAMYKRDEDGIVLVDQEACR
                     GWRYCMTGCPYKKVYFNWKTNKAEKCTFCFPRVEAGIPTVCSETCTGRMRYLGVLLYD
                     ADRVQEAASAENEQDLYEKQLDLFLNPFDEAVIEQAEKDGISQEWIEAAQNSPIYKLA
                     IEYKLAFPLHPEYRTMPMVWYCPPLSPIMNYFEGQNAGNNPDAIFPAIEEMRLPIQYL
                     AELFTAGDTVAVKGSLQRMAMMRSYMRAQNTGREFDMSRLARVGLTERQAKDMYRLLA
                     IAKHEDRFVIPTSHKEQYMDTYTAQGSQGYGGEHFGANCDGCGVPVGTGGKTGQEMYN
                     ERFYGGIFRD"
     gene            complement(7277..10948)
                     /locus_tag="PTC08_001504"
     CDS             complement(7277..10948)
                     /locus_tag="PTC08_001504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase subunit alpha"
                     /protein_id="HDK5683013.1"
                     /translation="MAKFGMQFFKPTEKFNGNWSVLEHKSREWEKMYRERWSHDKVVR
                     TTHGVNCTGSCSWKVFVKNGVITWENQQIDYPSCGPDMPEFEPRGCPRGASFSWYEYS
                     PLRIKYPYVRGKLWDLWTAALEEHQDPIKAWASIVEDEEKAKIYKSARGKGGHVRTNW
                     KDVSQLISAQLIYTIKKDGPDRIAGFTPIPAMSMISYAAGARFISLLGGEMLSFYDWY
                     ADLPPASPQIWGEQTDVPESSDWYNSSYIMMWGSNVPLTRTPDAHFMTEVRYKGAKVV
                     SVAPDYAENVKFADNWLAPNPGTDAAIAQAMTHVILQKFYEDEPSEMFINYAKQYSDM
                     PFILCLDQDDNGFKAGRFLRSSDLGQTSENSEWKPMIIDRLTDSLQVPNGTMGQRWEE
                     GKQWNLKLENEAGEKIDPAMTVIDGDYELITIQFPYFDNDGNGVFKRVIPARRVTLPN
                     GESTYVTTVYDLMASQYGVKRFNHELEAKGFDDATSFYTPAWQEKITGVKASMVTQVA
                     NEFAQNAIDTGGRSMIIMGAGINHWFNSDTIYRAILNLVILCGCQGVNGGGWAHYVGQ
                     EKCRPIEGWSTIAFAKDWQGPPRLQNGTSWFYFATDQWKYEESGVDRLASPLAENIKL
                     QHPADYNVLAARNGWLPSYPQFDRNSLLWGEEARDAGEFTNEAILKRAVDDVKSRRTR
                     FAVENPDLRKNHPKSLFVWRSNLISSSAKGQEYFMKHLLGTKSALMAEPNETDKPSEI
                     EWGEDTVGKLDLLVSLDFRMTATPLYSDIVLLAATWYEKHDISSTDMHPFIHPFNPAI
                     DPLWESRSDWDIFKTLSRTFSEMARVHLTGTYKDVVTAPLAHDSKQEISLAYGEVKDW
                     TKGEVEAVPGQTMPAFAVVDRTYTDVYDKFISVGPLLENGKVGAHGVSFSVKDQYDEL
                     RGMVGTWEDDTVKNNKPRIDTARKVADVILNVSSATNGRVSQKSYEDLEAQTGMSLKD
                     ISSERASEKISFLNITSQPREVIPTAVFPGSNKQGRRYSPFTTNIERLVPFRTLTGRQ
                     SFYIDHEVFQQFGEALPVYKPTLPPMVFGTKDKPVKGGVDALVLRYLTPHGKWNIHST
                     YQDNQHMLTLFRGGPTVWISNEDAAAHDIHDNDWLEVYNRNGVVTARAVVSHRMPRGT
                     MFMYHAQDKHIETPGSDISGTRGGSHNAPTRIHLKPTQLMGGYAQISYSFNYYGPIGN
                     QRDVYVAVRKMKEVDWLED"
BASE COUNT         3227 a         2560 c         1941 g         3370 t
ORIGIN      
        1 aggactgaga aacatgacgt ctctcggtcc tctttttatt cataacaatg ctctactctg
       61 aatcacttgt cagtattatg acacagtcgc tttatttgcg gctgcttttt cacgtttaga
      121 taagttaaac atcgttacaa gtgcaattaa tccgaataca cataacaaga tgaatgcgaa
      181 atgactcgta cctgtgatag atgtcacagc tgaaatgaca agcggtggga agaatccgcc
      241 aagccccccc atcatagaaa caataccgtt tgcgacaccc gcttcttttg tgaaataatg
      301 tggcactaat ttaaacacaa gtccgttacc aataccggca caaacactca ctgttaaaca
      361 gccgattgta aacaatgaaa tttgactcga aacacctaag ataaaagcac ccgcaatcat
      421 aatagagaag aagattttca acatcgtcac cgcgttaaat ttatccccta aaataccgcc
      481 aagaggtctc aaacacgtcg ctaacgcgat aaacacacct gtacgaattc ctgcatcaac
      541 tttatcaata ccgaaatttt gtacgaggaa gtttggtaaa aataggccaa atgcgacaaa
      601 tgagccgaac gtaataaaat accataagct taaataatac agtttatagt ttttcattaa
      661 aatacgcgtt tgttctacaa gtggtacttt cactttaggt tctttattgt ctcctaaaaa
      721 gaacatgatg attgcaaaga ctgccatgac aattaaataa ctacgtacag tgttttgcca
      781 tccgatgaca cctgcaatcg gtggcgctaa aaatgaagat accgctgtcc ccaagttccc
      841 cataccataa ataccgtttg cgagaccgac tttatcttta gaaaaatatt tcggaagtga
      901 tgtaacacct actgagaaaa tcgcgccccc gaccccaagg aagaatcctg caaacattaa
      961 cgcgccagga gagccagctt gactgagtaa aaatatcggt acgagcaaca caataaagct
     1021 cgtaaaaaac acccatttcg cgcctacaat atttgttaaa taaccaaatg gtacacgcag
     1081 aacagatcct agaataacgg gaatggccaa aataatagag agttgaccgc ttgaaatttt
     1141 aatatcttgt gaaataaatg gaattaatgg tgcaatgata ctccacgcca taaaccctgc
     1201 aacaaggctg agtgtttgga gcgcaagttg tacgccacct ttcgattgat tcatttctca
     1261 ttcacctttc tttactagat gcatcaactt gaacgttagc ttcagttcaa ataagatgcg
     1321 cgattagatt tcacctctag tttaacgata ttgtgaaatt tataacataa ggagttaccc
     1381 tattattaca tagcgtatcc cctaacaatc gaaagtgata gtgtccgctt acacatttga
     1441 catgtgctct attccattta tataaccaat atactcctct aatatattaa acttttgaac
     1501 aaattagatt tttgtattga tgcgttctga tccatcatcg ctaattaata tcccattatt
     1561 tgtatcatcg ttggtcgtaa taccttgttt attttgaaga tcaaatagtt ctgctaacaa
     1621 ccgtgcacca cgttcttttg tagttttaat tttgaaagac cattgatacg cttcaagtgg
     1681 cgtaaatcat ttatctttac ctacaatgtc taaataaaag acatcaaact tctcacagat
     1741 tcgatttatt aaccctgtcg taattgaact cgtcccattt gcataacagc ttaatctatt
     1801 acaagaaata tcaatcctaa ttacaagtaa aatttcaact tcaattaaaa agaacaagtg
     1861 catggaaatg tctgaattcc caataccttg ctcgatagtc tataaaaatt catttgagaa
     1921 taagcgtcta gttcactccc cctacattct cactacctcc ctctcattaa aaaagaaaag
     1981 ttgcgagaag cagtagataa aagtgtatca acaacccgct caaaataaaa gttgaggatg
     2041 acacaaaata tcgtgtaaca tcctcaactc gaaatgttta taaatatcaa ttgcacatct
     2101 gggcgagact cctgagggat cagctggccc ggaaaatcca tcaacgcttc cactacaaat
     2161 ataacagtaa aatgaaagcg ttgattagtt gtagggacag cccctaggaa cgcgagccca
     2221 aggtagcaat catgcaacat acacctataa cagaaaatgt tttaactccc gctacgttcc
     2281 ctcaatttta aaatgagcaa catgttaaaa cactaaaaat ccaacaactt cttcttcaac
     2341 gcatactcca ctaactccgg cttcgacttc aaattcaact tatccataat acgcgtttta
     2401 tgtgcctcaa ccgtcttcac cgacacaaac aatttctcag caatatcctt attcccataa
     2461 cctttcgcaa tcaatggtaa aatctccaat tcccgcttcg acaatacttt aaacggatca
     2521 ttcgaatact caccgtcatt tgatgaatgc acaaactctt tcactaaaga agtcgtcatt
     2581 ttcggatcaa tatacgtctc gccttggtaa acagtacgaa tcgctaacaa taattgttca
     2641 tccggcgcat ttttcaaaat atagccactc gcgccacttc ttaatacgtg aaataaatat
     2701 tcttcatcat catacatcgt gagtatgaga atttttgtat ttgggaaact atctaaaatt
     2761 ttactcgtcg caattaaacc cgattctcct ggtggcatac ttaaatccat aatcaataca
     2821 tccggtgcgt gctccatcac tttttgatac gcttcaacac catctgcagc ggtacccacc
     2881 acttccatat cttcttgaaa gtttaaaatc atcgaaaaac ccgtacgtac aacagcgtga
     2941 tcatctgcta tcacgattct catgctacat tcccctcact tttagctgat tggtacttcg
     3001 agtgacacaa tcgtaccctt tcctttttgc gtttcaatat tgagttttcc attcaccagt
     3061 tctgcacgtt catacatgcc ataaagccct aaaccggttc ctttaggcga atcactcggt
     3121 tcaaatcctc tcccttgatc tgaaacttcc gcataaaggt agtgatcatc tttgcgaata
     3181 atgacatcaa catcatcaat atccgcatac ttcatcgcat tgaaaaccgc ttcttgcacg
     3241 atacgataga cgacagtttc aatttccgca tcaaagcgct ccgagtcaat atcaaaatga
     3301 taattgatcg ctaggccgta gttattttct atctgtttaa aatatgtttt aaatgcggca
     3361 tctagtccta aatcatctaa tgtagacgga cgtaattctg atgataaatt gcgcaggtca
     3421 tcaatcaatt ttgtcatcaa gccttcaata tttttggcat tagataggag gacatccata
     3481 tcgttttgat attttaataa gcgcatttcc acattgatgt tgatcagttc ttgaacgacc
     3541 ccatcatgca attcacgcga aatccgttta cgttcgttct cttgtgctgc aatcgttttt
     3601 tggatcatat tacgttgata tagcttttct tgtcgctgca gttgtgctgt gacattttga
     3661 agcgtaaagg ctttaatttg tcgttcttca tcgatcgttt gataggtcgc tgtaaatggc
     3721 tcaattttat tattggtcgt tttcataaag acttgaaatg tcgtatcacc aatttcagaa
     3781 gactgcaaaa aacaattttg acatgtgcgt aaggcgtgtt cgttcgtata cccttcacat
     3841 ctgccacata tcgtcgtcga aatcccactc atatcattat ccgatgaaat gacgcgtttt
     3901 gccgcttcat tcatatcaat gacttgacct tgtgcatcga taaaaataat catttctgat
     3961 gtttgatgat agtatgcttg taaaaaattt aataattcgg tctgttgttg tggcattatt
     4021 gcatcacctt atcttcactt gtcaaactac caacactctt aatggaggaa atgtctttcg
     4081 ctagatgtgg caatggcttt tgattacgct gtccgagcaa aaggacacct ttcacacgat
     4141 ggttgtgcca cagtggaatc gcaatcaaag ccgtcaattg ctcactcatc aatataggat
     4201 aatcaaacaa tgtattttga attgcatcat ctgttgtatc cggaatgatc atcggcttgc
     4261 ctgttttcat cacattccct gcaataccat gtccattacg taacacaatg cgacgatatc
     4321 gttcattcaa gttgcctgac acgtaacgcc atttgatttt catccccaca tgatcttctg
     4381 atggcaaagc aataccggca aagtcaaact ggtattcatg acgtaatcta tctatttcat
     4441 cttgataatc atgttgcgaa aaatcaatct ggttcacggt catcaccttc cattaaattt
     4501 tatgtttgcg ataaataata taactacgac ttgcataagt caccggcaca ctccacacgt
     4561 gaacgagacg cgtaaagggc cagcaagcca taatcgtaaa gcctaaaaga acgtgcaatt
     4621 ggaatgcaag cggcacctct gtcatcaaat tagcatctgg actgagcgta aacaatgctc
     4681 taaaccaaat cgaaattgtt tgacggtaat caaactctgg cgttgtcgca ttcgtcacta
     4741 aagtcgcata acagccgaca aatacgataa gtaataataa aaagttaacg aaaatatctg
     4801 acgccgaact taaacgacga acattttgtt tcgtaatacg acgcgctgtt aacaaaaaca
     4861 taccaattaa cgttattata ccaaaaatgc ttccaatata cactgcaccg atatgataga
     4921 tatggttatt cacaccaact gcttccaacc aatgtgcagg gataagtaac ccaacgacat
     4981 gtccgaaaaa cacaggaata acgccaagat gaaacaacaa actgccccac tttaattgct
     5041 tcttctcaat aaattcactc gattttgcag tccatgaaaa ttggtcataa cgataacgtg
     5101 cgatgtgccc aataacaaaa actgcaagac agaggtacgg aaaaatcacc cataaaaatt
     5161 gattaaacat gatgtgtcac ctctttatct tgaacgatac aatgcttgaa cgtttcacga
     5221 agaccacgaa ttaaatgtgc atatggattg tgctcacttt ccaaatgttt catcatcgcg
     5281 tacgtcccat cttcaataat catgatcacg agttgtacat tttcttgcgc acgtgtatca
     5341 ccatcaaagc gtgccgcata taagaattcc aacatgagcg gcaagtaatc cgacaactct
     5401 gaagctggca tttcaagccc aaacatttca taaagaactt ttaacttcgc caacatttga
     5461 ccgcgttctt tttgtgtatc cagttgattg tatgtcatat acaaagtggc tttttcatta
     5521 aaatcaaacg tgtctgtgta aaaagcttgt atttccgaca aactcttttc atacattgct
     5581 tctcgatacg ccacgacatg cgggtaagct ggatgtgtct catcaaacac ttcttcaaat
     5641 gttttagggt ggaaggtcaa tttttcagga aagctcaact gctgactcat ataaccgaat
     5701 gtatctttat acgtatccaa catgtgtaga ttaatcacgg aaaatccctc catagaaacg
     5761 ctcgttatac atttcttgac ccgtttttcc acctgttccg actggtacac cgcaaccgtc
     5821 acagttcgca ccaaagtgtt ctcccccata accttgactg ccttgtgctg tgtacgtatc
     5881 catatattgc tctttatgcg aagttggaat gacaaaacga tcttcatgtt tagcaatagc
     5941 aagtaaacga tacatatcct tcgcttgtcg ctccgttaaa cctacacgcg ctaaacggga
     6001 catatcaaat tctcgtcctg tattttgtgc acgcatgtaa cttctcatca tcgccatacg
     6061 ctgaagtgag cccttcaccg ctaccgtgtc tccagctgta aagagttctg ctaaatattg
     6121 aattggtaaa cgcatctctt caattgctgg gaatatcgca tctgggttgt tacctgcatt
     6181 ttgtccttca aagtagttca taatcggact taatggtgga cagtaccata ccattggcat
     6241 cgtacgatat tctggatgca atgggaatgc caatttatac tcaattgcta atttataaat
     6301 tggtgaattt tgtgccgctt caatccattc ttgagaaatg ccgtcttttt ctgcttgttc
     6361 aatgactgct tcatcaaatg gatttaaaaa caagtcgagc tgcttttcat acaagtcttg
     6421 ttcgttttca gctgatgccg cttcttgcac gcggtccgca tcatacagca acacacctaa
     6481 ataacgcata cggcctgtac atgtctctga acatactgtc ggaatccctg cttcaacacg
     6541 tgggaaacag aatgtacatt tttccgcttt gttcgttttc cagttgaagt atactttttt
     6601 gtacggacaa cctgtcatac agtaacgcca accacgacat gcttcttggt ctacaaggac
     6661 gatgccatct tcgtcacgtt tgtacattgc accagacgga catgatgcca cacagcttgg
     6721 gtttaaacag tgttcacata gacgcggtaa atacatcata aatgtttggt caaagttgaa
     6781 tttgatttct tcttcaattt tttgaatgtt agggtcttgc gggccagtaa tatgaccgcc
     6841 ggctaagtcg tcttcccagt ttggacccca atccaaatcc atacgttgcc ctgtcatcac
     6901 ggaatgtgct ttggctacag gtgtatgttg gcttggtttc gcttttgtca gatgttcgta
     6961 gttgtatgtc caaggctcat aataatcttg aatgactggc atatccggat tgtagaagat
     7021 cttacctaat gcaattttgt ttaaacgtgt ccctgatttc agctctaatt tccctttttt
     7081 gtttaagacc catccgcctt tatatgtttc ttggtcttcc caacgttttg ggtaaccaat
     7141 acccggtttc gtttcgacgt tattgaacca catatattca gcgcctggtc gattggtcca
     7201 agtactttta catgtcacac tacaagtatg acagccgata catttatcta aattcaatac
     7261 cattgcgact tgtgctttaa tcttcaagcc aatccacctc tttcatcttt cttacagcga
     7321 catacacatc acgctgattc ccaattggtc catagtaatt aaatgaataa ctgatttgtg
     7381 cataaccgcc cattaactgt gtcggtttta aatgaattcg agtcggcgca ttatgagagc
     7441 caccacgtgt acctgaaatg tctgatccag gtgtttcgat atgtttatct tgcgcgtgat
     7501 acataaacat tgttcctcgt ggcatacggt gtgacacgac agcacgtgca gttacgacac
     7561 catttcggtt gtaaacttct aaccaatcat tgtcgtggat atcatgtgct gctgcatctt
     7621 cattcgaaat ccaaacagtg ggtccaccac ggaataatgt caacatatgt tggttatctt
     7681 gatatgtgga gtgaatattc cattttccgt gtggtgttaa atagcgtaat acaagtgcat
     7741 ccacgccacc tttcactggt ttatcttttg taccgaagac cattggtggt aatgtcggtt
     7801 tatagactgg cagtgcttca ccaaattgtt ggaacacttc atggtcgatg tagaaacttt
     7861 gacgtcccgt taacgttcta aatggtacaa gtcgttcaat attcgttgta aatggtgaat
     7921 agcgacggcc ttgtttgttt gaacctggga acaccgctgt cggtatgact tcacgcggtt
     7981 gtgatgtaat gttcaagaac gatatttttt ccgatgcacg ttcagatgaa atgtctttca
     8041 atgacattcc tgtttgtgct tccaaatctt catatgactt ttgagataca cgaccatttg
     8101 tagcagaaga cacgttcaaa ataacatccg ctactttacg tgctgtatcg atacgcggtt
     8161 tattattttt cactgtatcg tcttcccaag taccgaccat accgcgcaat tcatcatatt
     8221 ggtctttgac agagaagctg acaccatgcg cgccgacttt accgttttca agtagtgggc
     8281 caactgagat gaacttgtca tacacatctg tatacgtccg atcaacgact gcaaatgctg
     8341 gcattgtctg acctggtaca gcttccactt cacctttagt ccagtctttc acttcaccat
     8401 aagcgagtga aatttcttgt ttagaatcgt gcgcaagtgg tgcagtgacc acgtctttat
     8461 aagtgcctgt taaatggaca cgtgccatct ctgagaatgt acggctcaac gttttgaaaa
     8521 tatcccagtc tgagcgtgat tcccataatg gatcaatcgc tgggttgaaa ggatgaatga
     8581 atggatgcat gtctgttgat gaaatgtcat gtttttcata ccacgttgct gccagtaata
     8641 cgatatctga ataaagtggt gtcgctgtca tacggaaatc taatgacacg agtaagtcga
     8701 gttttccgac tgtatcttca ccccactcaa tttctgatgg cttgtctgtt tcattcggct
     8761 cagccataag tgccgatttg gtgccgagta aatgcttcat aaaatactct tgacctttag
     8821 cagaacttga aattaaattt gaacgccata cgaaaagtga cttcggatga tttttacgta
     8881 aatctggatt ttcaaccgca aaacgtgtac ggcgtgattt cacatcgtca accgcacgtt
     8941 tcaaaatggc ttcattcgta aactcacccg catcacgcgc ttcttcaccc cacaataaac
     9001 tgttgcggtc aaattgtgga taagatggca accaaccatt acgtgccgct aaaacgttgt
     9061 agtctgccgg gtgttgcagt ttaatatttt ccgctaatgg tgacgctaat cggtcaacac
     9121 ctgactcttc gtatttccat tgatctgtcg caaaatagaa ccaacttgtt ccgttttgta
     9181 aacgtggtgg accttgccaa tctttcgcga aggcaatcgt actccaacct tcaatcggac
     9241 gacatttttc ttgcccaaca tagtgcgccc aaccgccacc attcacacct tggcaaccac
     9301 ataaaatgac taagtttaaa atggcgcgat agattgtatc tgagttgaac cagtgattga
     9361 tacccgcacc cataataatc attgagcgac cgcctgtatc aatcgcattt tgtgcaaatt
     9421 cgttcgctac ttgcgtcacc atgctcgctt tcacgcctgt aatcttttct tgccacgctg
     9481 gtgtgtaaaa cgacgtcgca tcatcaaaac cctttgcttc taactcatga ttgaaacgtt
     9541 tcacaccgta ttgactcgcc atcaagtcgt atacagttgt cacatatgtt gattcaccat
     9601 ttggcaatgt cacacgacgt gcaggaatga cacgtttgaa gacaccattg ccatcattat
     9661 caaagtaagg aaactgtatc gtaatcaatt catagtcacc gtcaatgact gtcatcgctg
     9721 gatcaatctt ctcgcccgct tcattttcta acttcaaatt ccactgtttg ccttcttccc
     9781 aacgttgccc cattgttcca tttggcactt gtagtgaatc tgttaaacgg tcgataatca
     9841 tcggcttcca ttcactgttt tcagatgttt gtcctaaatc acttgaacgt aagaagcgac
     9901 ctgctttaaa accattgtca tcttgatcga gacataggat aaatggcata tctgagtatt
     9961 gtttcgcata attgatgaac atttctgacg gctcatcttc ataaaacttt tgtaaaatga
    10021 catgtgtcat cgcttgtgca atcgccgcat ctgttcctgg atttggtgct aaccaattgt
    10081 ccgcaaactt cacattttca gcgtaatccg gcgcaacaga caccactttt gcccctttat
    10141 aacgcacttc tgtcataaag tgtgcatccg gcgtacgtgt aagtggtacg ttagagcccc
    10201 acatcataat ataagatgaa ttgtaccaat cacttgattc cggtacgtct gtttgttcac
    10261 cccaaatttg tggcgacgct ggtggtaaat ccgcatacca atcatagaaa ctcaacattt
    10321 ctccaccgag taacgaaata aaacgcgcac ccgccgcata actgatcatc gacatcgctg
    10381 gaattggcgt gaaaccagca atacggtctg gaccatcttt tttaatcgtg taaatgagct
    10441 gtgctgaaat gagttgagac acatctttcc aattcgtgcg gacatgtccc cctttaccac
    10501 gagctgactt ataaattttt gctttttctt catcttctac aatggatgcc catgctttaa
    10561 tcggatcttg atgttcctct aaagctgccg tccataaatc ccaaagcttg cctctcacat
    10621 aaggatattt aatacgtaac gggctatatt cataccaaga aaacgacgcc ccacgcggac
    10681 agccacgcgg ttcaaactcc ggcatatccg gcccacaact cggatagtcg atttgttgat
    10741 tttcccaagt aattacaccg tttttcacaa acaccttcca cgagcatgac cccgtacagt
    10801 tgacgccatg tgtcgtacga acgactttgt catgactcca tcgttcacga tacatctttt
    10861 cccattcacg gcttttatgt tctaatactg accaattgcc attaaatttt tcagtcggtt
    10921 taaaaaattg cattccaaat ttagccatag atatcctcct ttttcgcata gcacgcccta
    10981 tcactctgat tgtacattta ttcacaaaac gaagatatta gggaattgcc taattcacta
    11041 gtgggaatcc ctagtgttcg ttgtaaatta aaatgaaaaa tagggaaatg ataacgta
//
LOCUS       DANHOL010000079        11049 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.079, whole genome shotgun sequence.
ACCESSION   DANHOL010000079 DANHOL010000000
VERSION     DANHOL010000079.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 11049)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11049)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11049
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.079"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            305..1258
                     /locus_tag="PTC08_001505"
     CDS             305..1258
                     /locus_tag="PTC08_001505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HDK5683014.1"
                     /translation="MKKWLWCLLIILLCGCQQDTSNANDTLTIYSPYPKHLIQPILKD
                     FEHQENVKVTVIEDSTQVLLSKIHQTPKHGRGDIFVGGVLSETIEHPEDFVPYKAPDL
                     SKFRISLSDQPIVTPFILMPTVIVVNTDLQGDIHINGYMDLLQPALKQKVAYSNPKTT
                     TTGYQHMRGLYHIHHNTDAIHQFRQQAVALSKSSDVIAQVAQGRYYAGLSYEQDARTW
                     LQKGYPLKVIYPDEGTVLNIDGIALVNSQHPHPKRTALIHYLTSYTVQQRLAQENGVK
                     PIRRDVSEIKEPGIAQLRDIPVIPETALPHETHQKFLERVE"
     gene            1255..2808
                     /locus_tag="PTC08_001506"
     CDS             1255..2808
                     /locus_tag="PTC08_001506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HDK5683015.1"
                     /translation="MKTYQPYRYQLRRSLFISTILPVFLVILLGLVSFYTLYIWVEHR
                     HIHQHLHEAEHDLAHTENQIKTTLQTEKSTLEQLDLSKKSDVTTFKRLLLELVHQQPG
                     TVYYVVDNGKTSITNNYEKKDVHQLYLMHQQRIQLLHESVALSFYLAQTPHIEEIQDR
                     YGHTTLILDRFDNILYSNSEHFHVDDAFPPPPFGFISERIRLNNKGEQMIQFKDIHDA
                     LEDGLRLLAIICIAFVLLMIFGFMNAHRMAKRQTRDIELMIDRINQAQRRELGAYQPL
                     GQPSELEDINTYIYELVESNETLIHSIEQTEQQLRKIQLKEIERQFQPHFLFNTMQTI
                     QYLITLSPRQAQKVVQQLSQMLRYTLRVKTDKVPLKEELAYIQKYVTIQNIRFDDSIT
                     LNIDMDHRLENELIRKMMIHPLIENAIKHGRESEPLIITIRIKQTAKYLRIFVHDNGM
                     GMTVDRRAQVRQMLQENVFDTSHLGLNHLNHKVQIQYGVRARLRIFSAYQQGTLIAFQ
                     LPREEQTDV"
     gene            2801..3544
                     /locus_tag="PTC08_001507"
     CDS             2801..3544
                     /locus_tag="PTC08_001507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HDK5683016.1"
                     /translation="MYKVVICDDERIIREGLKQAISWEDYHFHEVWLAKDGIEGLSLI
                     REHQPDLVITDIRMPRMDGVELLEAIKDLPCQKIILSSYDDFEYMQAGIHHHVLDYLL
                     KPIDSEQLNQRLAQFVPHAHEQKTTMTTTLPIFQPLMKLEYPDYYVNYVVQHIHHHYD
                     QKWQSNALTTELGVSESYLMRIFKTHVGITMLDYLNRYRIYQAMSLLQSGDKHYEIAH
                     KVGFSDYKSFSYHFKKYLKMSPREYVNSK"
     gene            complement(3747..5126)
                     /gene="uhpT"
                     /locus_tag="PTC08_001508"
     CDS             complement(3747..5126)
                     /gene="uhpT"
                     /locus_tag="PTC08_001508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hexose-6-phosphate:phosphate antiporter"
                     /protein_id="HDK5683017.1"
                     /translation="MNFFDIQKIPNKGISLSMQRKLWLRYFLQAFFVVFFAYMAMYLI
                     RNNFKAAQPLLKEEIGLTTLQLGYIGLAFSITYGLGKTLLGYFVDGRNTKKIISFLLV
                     LSATVVLIMGFVLSYFGSVMGLLIVLWGLNGIFQSVGGPASYSTISRWAPRTKRGRYL
                     GFWNTSHNIGGAIAGGLALWGANVFFHGSVIGMFVFPSVIALIIGIATLFIGKDDPEE
                     LGWNRAEEIWEEPVEQENIDAQDMTKWQIFTKYILKNPVIWILCVSNVFVYIVRIGID
                     NWAPLYVSEYLHFDKADAVNTIFYFEIGALVASLLWGYVSDLLKGRRAVVAIGCMFLI
                     TFVVHFYTHATSVTMVNVSLFALGALIFGPQLLIGVALTGFVPKNAISVANGMTGSFA
                     YLFGDSMAKVGLAAIADPQRNGLTVFGYTLSGWTDVFIVFYAALFIGIILLGFVAYFE
                     EKKIRSLNI"
     gene            5396..6331
                     /locus_tag="PTC08_001509"
     CDS             5396..6331
                     /locus_tag="PTC08_001509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-dehydropantoate 2-reductase"
                     /protein_id="HDK5683018.1"
                     /translation="MKKIAIAGAGAMGGRIGSQIKEAGYDVKLIDMWEEHVNTINEKG
                     LEIQTETDTYTLEIPAVLPHQVNETFDLVIILTKSMQAKQMLRTLYDNKAINEDTALL
                     SMMNGLGHGDRLSAIVPKTQIFLAVTMWTAGLRGPGQLLLEGQGSIEFQRADGQADER
                     TERINQVFNDAKLNAKISDNVFKSIWSKATLNSVLNPLCTILDKTINEFSQYEKARDI
                     VEPLIGEIVAVAEARGVSLSAAALLDKIEAAYPNEAQGLHYPSMHQDLYNGRYTEIDY
                     LNGQIAKYGRELGIATPNNEMLTHLIHELEMKHVK"
     gene            6823..7509
                     /locus_tag="PTC08_001510"
     CDS             6823..7509
                     /locus_tag="PTC08_001510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate decarboxylase"
                     /protein_id="HDK5683019.1"
                     /translation="MKEYRHYIHQVGTMKSLLEGHLESEVTIAELLRYGDYGFGTLNH
                     ADGDFVIIDGQPVHMNQFDEHHGLNGREKVPYGAIYRDRAQLTFDITDMHHTYVFERI
                     KQKFESNQLFSITRIHGDLSDLHLSIYEKHPVIEPSSQHIQPITLSEVERTIREIKGT
                     ILVLFTPHELSGIHPPGFSAYFVSEHHHIVGKVMSFNVVAAHASFQSFDGFSVICPTV
                     EPLFIPYFPE"
     gene            7916..8806
                     /locus_tag="PTC08_001511"
     CDS             7916..8806
                     /locus_tag="PTC08_001511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructose bisphosphate aldolase"
                     /protein_id="HDK5683020.1"
                     /translation="MNQEQFDKIKNGNGFIAALDQSGGSTPKALRGYGVSEDQYTNDD
                     EMFNLVHDMRTRIVTSPSFTADKVLGAILFEQTMDREVEGKHTGEYLADKGIVPFLKV
                     DKGLEDKENGVQLMKPIPELDSLLDRANEHKIFGTKMRSNILEFNKEGIDAVVEQQFG
                     IARQIISKGLVPIIEPEVNIDAEQKAEIEAYLAESIQKQLDKLGSEDYVMLKITIPTQ
                     KNQYQSLINHPNVVRVVALSGGYSLEKANEFLKTNHGLIASFSRALINDLRVSQSDEE
                     FDRLLGQTIDAIYDASVNKV"
     gene            complement(9299..10954)
                     /gene="adcA"
                     /locus_tag="PTC08_001512"
     CDS             complement(9299..10954)
                     /gene="adcA"
                     /locus_tag="PTC08_001512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding
                     lipoprotein AdcA"
                     /protein_id="HDK5683021.1"
                     /translation="MKKSFKLLATVVLSGSMLAACGQGDDKASSNDQLKVTTTVFPLQ
                     SFVKQIGGEHVEVDSIYPKGADLHSFEPTQKDIIDASKSDLFIYTGDDLDPVAKKVAN
                     AIKKDDHKLSLESSLDKATLLTDQHEHGEHEEHGEHEEHGEHGEHGEHEEHGEHEEHG
                     EHEEHGEEGHKHSEAHDEHEHHHHHGGYDPHVWLDPQLDKKFVSAIRDDLSKRDPKHK
                     AEYDKNADKVLKDLDSIDRELKDVTKDHQGHAVFISHESLGYLADRYGFVQKGVQSLN
                     AEDPSQKELTEIVKEINETGAKYILYEENVANKVTDTIRKETDAKPLKFNNMEAVSKD
                     QAKDATYQSLMKENVKNIEKALNDKIKVEDDKAANKHSKAIQDGYFKDDQVKDRDLSD
                     YAGEWQSVYPLLKDGTLDEVFEHKAEDKGDKSAKEYKAYYDKGYKTDVEKIKITDNQI
                     TFTKNGKSMTGTYTYDGKDILQYEGGNRGVRYTFKLEGDASEGLPKYVQFSDHNIAPT
                     KTGHFHIFTGNDREKVLKELENWPTYYPANLTKEQVKDEMLEH"
BASE COUNT         3556 a         2162 c         1889 g         3442 t
ORIGIN      
        1 agtctatatt gtcattagtt tatcatttct tttttaataa gcctaacgtc ctttaaatga
       61 acattaaaaa tttcttactt cttgttccgc atatctttaa aataaactta aaatttgagg
      121 cctactcatg cgtatcacac cgcttttata tttacatgcc cctgtgactg ttaaataact
      181 ccaccaatct aaatttcaat catccaaaat cataagaaag tcataatatt aatttttttc
      241 tctacaaatt aaataaatat tggtaagata aatacaatac ttgagatagg aaaggattat
      301 acgaatgaaa aaatggttat ggtgtctact cattatactt ctttgtggtt gtcaacaaga
      361 tacatcgaat gcgaacgata cattaaccat ttattccccc tatccgaaac atttgattca
      421 acctatactc aaagactttg aacatcaaga aaatgtaaag gtaacagtca ttgaagattc
      481 gacacaagtt ttattatcaa aaattcatca gacgccgaaa catggacgcg gagatatttt
      541 tgtaggtggg gtattaagtg aaactatcga gcatcctgaa gattttgtgc cttataaagc
      601 accagatcta tctaagtttc gtatttcatt atcggaccaa cctatcgtca caccgtttat
      661 attaatgccg acagtaattg ttgtgaatac ggacttacaa ggtgatattc acatcaatgg
      721 ctatatggac cttctgcaac cggcactcaa acaaaaagtc gcctattcga accctaaaac
      781 gacaacgaca ggttatcaac atatgcgcgg gttataccat attcatcaca atactgacgc
      841 aattcatcaa ttccgccaac aagcagtggc gctttctaag tcttctgatg tcattgccca
      901 agtagctcaa ggacggtatt atgctggact cagttacgaa caagatgcgc gcacctggct
      961 tcaaaaaggc tatccgttaa aagtcatcta tccggatgaa ggtacagtgc tcaatataga
     1021 cggtattgcg ttagtgaaca gtcaacaccc gcaccctaaa agaactgcac tcatacatta
     1081 cttaacaagc tacactgtac aacaacggtt agcccaggaa aatggggtaa aaccgatacg
     1141 tcgtgatgtc tcagaaatca aagaacccgg aattgctcaa ttacgagata ttccagtcat
     1201 ccctgaaact gcattgccac atgaaactca tcaaaaattt ttggagcgtg tagaatgaaa
     1261 acgtatcaac cttatcgtta tcaattgcgt cgttcgctgt ttatttcgac gattttgcct
     1321 gttttccttg tgattttact tggactcgtc agtttttaca ctttatatat ttgggtggaa
     1381 catcgacaca ttcaccaaca tttgcacgaa gctgaacatg atttagcgca tactgaaaat
     1441 caaataaaaa cgacccttca aaccgaaaaa tcgacattag aacaactcga tttatccaaa
     1501 aagtctgatg tgaccacttt caaacgtcta ttacttgaac ttgtgcatca acagccaggt
     1561 acggtctatt acgtggtcga taatggtaag acatctatta cgaacaatta tgaaaagaaa
     1621 gatgtccatc agttgtattt aatgcatcaa caacgtattc aactgttaca cgaaagtgtc
     1681 gcactgtctt tctaccttgc tcaaacgcca catatagaag aaattcaaga ccgctatggt
     1741 catacaactt tgattttgga tcgctttgat aatattttgt attccaactc ggaacatttt
     1801 cacgtcgatg atgcttttcc acccccacca ttcggcttta tatcagaacg tattcgcctg
     1861 aataataaag gtgaacaaat gattcaattt aaagatatcc acgatgcatt agaagatggt
     1921 ctgcggttgt tagccattat ttgtattgct ttcgtgctgt taatgatttt tggttttatg
     1981 aatgcacatc gcatggccaa acgtcaaaca cgtgatatcg aattaatgat tgatcgtatc
     2041 aaccaagcac aacgtcgtga actcggggca tatcaacctt taggccaacc gagtgaactt
     2101 gaagatatca acacttatat ttatgaatta gtcgaatcaa acgaaacact cattcactca
     2161 attgaacaga cagaacagca attacggaaa atacaattaa aggaaatcga gcgtcaattc
     2221 caaccccatt tcctctttaa tacgatgcaa acgatacagt atttaattac actgtcaccg
     2281 cgtcaagcac aaaaagttgt acaacagttg tcacaaatgt tgcgttatac attgcgcgtc
     2341 aagacggaca aagtgccatt aaaagaggag cttgcttata ttcaaaaata tgtcaccatt
     2401 caaaacatcc gcttcgatga cagtattacg ttaaatatag atatggacca tcgtcttgaa
     2461 aatgagctga ttcgtaaaat gatgattcac cctttaattg aaaatgcaat taagcacggt
     2521 cgtgaatccg aacctttaat catcacgata cgtattaagc aaactgccaa atatttacgt
     2581 attttcgtcc atgataatgg gatgggtatg acagtggaca gacgtgcgca agtgagacaa
     2641 atgttgcaag aaaatgtatt tgatacgtca catttaggtt tgaatcacct taaccataaa
     2701 gtacaaattc aatatggtgt acgtgcaaga ttgagaattt tttcagctta tcaacaaggg
     2761 acattaatcg catttcaact accaagagag gagcaaactg atgtataaag tggtcatttg
     2821 tgatgatgaa cgtattattc gtgaaggact gaagcaggca atctcgtggg aagactatca
     2881 ttttcatgaa gtttggctcg ctaaagacgg catcgaaggg ttgtcactga ttcgagaaca
     2941 tcaacccgac cttgtgatta cagacattcg tatgccgcgt atggatgggg tcgaactgtt
     3001 agaagcgatt aaagacttgc cgtgtcagaa gataatttta tcgagttatg atgattttga
     3061 atatatgcaa gcagggattc atcatcacgt gttagattat ttattgaaac cgattgattc
     3121 agagcagtta aatcaacgtt tggcgcaatt tgttccacat gcacacgagc aaaaaacaac
     3181 aatgacgaca acattaccta tatttcaacc gttaatgaaa ttagagtatc ctgactatta
     3241 cgtcaattac gttgttcaac atatccatca tcattatgat caaaaatggc aaagtaatgc
     3301 attaaccaca gagctcggcg tgagtgaatc ttatttgatg cggattttta aaacccatgt
     3361 cggaattacg atgttagatt atttaaatcg ttatcggatt tatcaagcga tgtcattgtt
     3421 gcaaagtggg gataaacatt atgaaattgc ccataaagtc ggtttttctg attacaaaag
     3481 tttcagttat cattttaaaa agtatttgaa aatgtcacca cgagaatacg tgaattcaaa
     3541 ataatgtatg aacactgagt atgattcacc acttcattca ctgatgacat ctacttgcac
     3601 aaaacttttt ataagtgatt cgtcgtgact cgaatgcagg ctaacttctg tcatattaaa
     3661 catgtaaagt tatgtaaaag cacatctatt aatcaaaaaa actaaggggc ttagacgatt
     3721 gaacgtctaa gcctcccaat tgtacattaa atatttaaac ttctaatttt cttttcttca
     3781 aaataagcaa caaaaccgag tagaataata cctataaaga gtgcggcata aaagacgata
     3841 aagacatctg tccaaccact taatgtataa ccaaatactg ttaatccgtt gcgctgagga
     3901 tctgcaatcg ctgcaagtcc aactttcgcc attgaatcac caaataaata cgcaaatgag
     3961 ccggtcatcc cattcgctac actaatcgca tttttaggta caaagcctgt taatgcaaca
     4021 ccaattaata attgcggtcc gaaaataagt gcacctaaag cgaataatga aacgttaacc
     4081 attgtcacac ttgttgcatg agtgtagaaa tgcacaacaa atgtaattaa aaacatacat
     4141 ccgattgcta caacggcacg acgtcctttg agtaaatccg acacataacc ccataataaa
     4201 cttgcgacta atgcgccaat ttcaaagtaa aatatcgtat ttaccgcatc tgccttatca
     4261 aaatgaaggt attccgatac gtacaatggc gcccagttgt cgataccaat tcttacgata
     4321 taaacaaata cgttagatac acacaaaatc caaatcacag gattctttaa aatatatttc
     4381 gtgaaaattt gccatttcgt catgtcttgt gcatcaatat tttcttgttc gacaggctct
     4441 tcccaaatct cttctgcacg attccaaccg agttcttcag gatcatcctt accgataaag
     4501 agtgtcgcta tcccaattat caacgcgatg actgatggga acacaaacat tccaatgaca
     4561 ctaccatgga agaaaacgtt cgctccccat aacgcaagac cccctgcaat ggcaccacca
     4621 atattatgtg atgtattcca gaaacctaaa taacgaccgc gctttgtacg tggtgcccag
     4681 cgtgatatcg ttgagtaact tgctggccca ccgaccgatt ggaatatccc atttaatccc
     4741 cataaaacaa ttaataagcc cattacagaa ccgaagtaac ttaatacaaa tcccataatt
     4801 aaaacgactg ttgcagataa aacaagtaaa aaggaaatga tttttttcgt attacgacca
     4861 tctacaaaat agccgagtaa tgtcttccct aatccatatg taatactaaa tgctaaaccg
     4921 atatacccga gttgtaacgt cgtcaatcca atctcttctt taagtaaagg ttgcgccgcc
     4981 ttaaagttat tacgaatcaa gtacatcgcc atgtaagcga aaaacacaac gaagaaagct
     5041 tgcaagaaat aacgtagcca aagtttacgt tgcattgaaa gcgaaatccc tttgttaggg
     5101 atcttttgaa tgtcgaaaaa gttcatgtgg ttcacctctg tcttcatttg acttcactat
     5161 agcacctgat gaaagcgctt aatatcctaa aaattatcgt tttatccgaa atactgaaca
     5221 aaggcattga actgaatgcg ttaatctaca cattgggctt tcttgtagca aatttcaata
     5281 tttcatcaca tataatacta attttcgaaa gtctctgtaa ctttttattg acggatacaa
     5341 aaagtgaaat ctaaacttaa gttgtaacta attttatata aggaggcatt gttttatgaa
     5401 aaaaattgct attgctggtg caggggctat gggtggacgt atcgggagcc aaattaaaga
     5461 agccggctat gatgtgaaat tgattgatat gtgggaagaa catgtgaata caatcaatga
     5521 aaaaggactt gaaatccaaa cagaaaccga tacttacacg ctagagattc ctgctgtttt
     5581 gccacaccaa gtaaacgaaa catttgattt agtgattatt ttgacgaaat caatgcaagc
     5641 taaacaaatg ttacgtacac tatacgacaa caaagcaatc aatgaagata ccgctctatt
     5701 gtctatgatg aatggtttag gtcatggcga tcgtctctct gctatcgttc caaaaacaca
     5761 aattttctta gcagtaacaa tgtggacagc tggtttgcgt ggaccaggtc aattgttatt
     5821 agaaggacaa ggttctattg aattccaacg tgctgatggt caagcggatg aacgtacaga
     5881 acgtattaat caagtgttta atgatgcaaa attaaacgct aaaattagtg acaatgtatt
     5941 taagtcaatt tggagtaaag cgacattaaa cagtgtttta aacccgctct gtacgatttt
     6001 agacaaaacc attaatgaat tcagtcaata tgaaaaagca cgtgacattg tcgaacctct
     6061 cattggagaa attgtcgcag ttgcagaagc gcgaggtgtc tcattaagtg cagcagcatt
     6121 gcttgataaa attgaagcgg cgtatccaaa tgaagcacaa ggtttacact atccttcgat
     6181 gcatcaagat ttgtacaacg ggcgctatac agaaatcgac tacttgaacg gtcaaatcgc
     6241 aaagtacggt cgtgagctcg gtattgctac accgaataac gaaatgctga cgcacttgat
     6301 tcatgaatta gaaatgaaac acgtgaaata atcaacgaca ttttaaccat cttgaatgag
     6361 gtaagtaagt tggccaaggc gttcctcttt ttttacccca ataggtcaac atacttacct
     6421 ttttatactt tattattttt aactctctct aaaatctcac tgttgaaatt catatgaagc
     6481 ggttaaaact tattgcgttg gattttgtac actcgacgca tgaaaatggt tcacacaact
     6541 acagaaatgt atataatttt tagttcaaat tttgacatta aaagcctgat aatcagcgca
     6601 ttatgccatt gccagaaaat ttatgtcatt tttttcagaa aattatgttg atttttttac
     6661 tgccggcgtt tatactcttt acatagcaag caacaaaata tattttaaaa tcttattcgt
     6721 cgacgaagcg ctttgctatc tttggccaat gaggcacagt attaaaatag gaagtctgcg
     6781 atatttcaga ttgtattgag aaataaaaag gaggctgatc caatgaaaga atatcgtcac
     6841 tatattcatc aagttggcac gatgaaatca ttattagaag gtcacctaga gagtgaagtc
     6901 acgattgctg aactgttacg ttacggtgat tatggcttcg gcacattgaa tcatgcagat
     6961 ggcgattttg tgattattga tggtcagccc gttcatatga atcagtttga tgagcatcac
     7021 ggacttaatg gtagagagaa agtaccgtat ggcgccattt accgtgaccg tgctcaattg
     7081 acttttgaca tcactgacat gcatcatacc tatgtttttg aaagaatcaa acaaaagttc
     7141 gaaagcaatc agttgttttc cataacaaga atacacggtg acttgagtga tttacatctc
     7201 agcatttatg aaaaacaccc agtcatcgaa ccatcatctc aacacataca accgattact
     7261 ttatccgaag ttgaacgtac aattcgtgaa atcaaaggca ctattttagt tctatttaca
     7321 ccccatgagc tgagtggtat tcatccgcct gggtttagcg cctatttcgt ttcagagcac
     7381 catcatatcg ttggaaaagt gatgagcttt aacgttgtag ctgcgcatgc atcattccaa
     7441 agttttgacg gtttttcagt aatctgtcca accgttgaac cattgtttat tccatatttc
     7501 cctgaataaa caaacattaa gtatttgaca cgatatcata tgacgcctta gcaaataaat
     7561 cataagaaag atgagtttcc accaaaatcg atgcagtgaa agtattcaaa atttattcca
     7621 tcatcaatgt cagatgactt gtcttgaatt aaatgaaatg cgcaatttta gacgtcagcc
     7681 atgtatccgc tgctgtacca tgcatattcc aacaatgcgt ggtgcagtgg ttttttattt
     7741 cctcacattt acctttcttc aaaatgttca ctttatagac aaaatcctct gctgcctgct
     7801 atgacagcgt tttattgcta cttttttcaa tttttagatt tctcatttca tttgaatctg
     7861 ttatcataat tcgtcatact agatgtagaa aaatgtttca aggaggaaag tcagtatgaa
     7921 tcaagaacaa tttgataaaa ttaaaaatgg aaatggtttt atcgcagccc ttgaccaaag
     7981 tggtggtagt acacctaaag cgttacgtgg ctacggtgtt tcagaagatc aatacactaa
     8041 tgatgacgaa atgttcaacc tcgttcatga catgcgtacg cgtattgtga cttctccgtc
     8101 atttactgca gataaagtgc ttggtgcgat tttattcgaa caaacgatgg atcgtgaagt
     8161 agaaggtaag cacactggtg aatatttagc tgacaaaggt attgtgcctt tcttaaaagt
     8221 agataaaggg cttgaagata aagaaaatgg cgttcaactc atgaagccta ttcctgaatt
     8281 agacagctta ttagatcgtg cgaatgaaca caaaatcttc ggtacaaaaa tgcgttctaa
     8341 cattttagaa ttcaataaag aaggtatcga cgctgttgtt gaacaacaat ttgggattgc
     8401 acgccaaatc atttcaaaag gtctcgtgcc aatcatcgag cctgaagtga atattgatgc
     8461 agaacaaaaa gccgaaattg aagcttattt agctgaatct attcaaaaac aattagacaa
     8521 acttggttct gaagattatg tgatgttaaa gattaccatt ccaactcaaa aaaatcaata
     8581 tcaatcatta atcaaccatc caaatgtagt tcgtgtggtg gcattatcag ggggttacag
     8641 ccttgaaaaa gcgaatgagt tcttaaaaac aaatcacggc ttgatcgcaa gtttctcacg
     8701 tgcattaatt aatgacttac gtgtgagcca atctgacgaa gaatttgatc gcttattagg
     8761 ccaaacgatt gatgccattt acgacgcatc agtcaataaa gtctaagtgg tatggctcag
     8821 tttttaactc atccctaaaa ctcaattatg gatagcgctc attttgctta atgttgaaat
     8881 gatgacgtta tccatatttt tattttacaa attggctaca attcaaaata tactcacacg
     8941 cattaacgcg ctctgccatc tcattttcag tgtatgacat ccgttttaaa agattattgc
     9001 tatattcaaa ttatcttgta tttcatccta tcaattttaa aatttgatac agttacatac
     9061 agaaaaagca ggatgatatt ttcataatga aaaaatggat agcggcttgt taatatgcag
     9121 tcaatccaac agagctattc gagccaaaaa aagcataaaa ttaaacgata gagaagaagc
     9181 ggcctacgtt aaacaatcag tctttcttgt tgctcaatgt agaagcaacc caaccacctc
     9241 aaacatcaaa agaaccagaa gagatacacg tctcgtccgg ttcttttatt aaatcatatt
     9301 aatgctctaa catttcatct ttaacttgtt cttttgtaag attagctgga taatatgttg
     9361 gccaattctc taactctttc aatactttct cacggtcatt tcctgtaaag atatggaaat
     9421 gtcctgtttt cgtaggcgca atgttatgat cgctaaattg tacatatttt ggtaatcctt
     9481 ctgacgcgtc accttcaagt ttgaaagtat aacgcacacc acggttgcca ccctcatatt
     9541 gcaaaatgtc tttaccatca tacgtatatg tgcctgtcat agacttacca ttctttgtaa
     9601 aagtaatttg attatctgta atcttaatct tttctacatc agttttgtaa cctttatcat
     9661 aataagcttt gtactctttt gcagatttgt cacctttgtc ttctgcttta tgttcaaaaa
     9721 cttcatcgag cgtaccatct tttaataatg gataaactga ttgccattca ccagcatagt
     9781 cagataaatc acgatctttc acttgatcgt ctttgaaata gccatcttga atcgctttgc
     9841 tgtgtttatt tgctgcttta tcgtcttcta ctttaatttt gtcgttgagc gctttttcaa
     9901 tgtttttcac attttctttc atcaatgatt gataagtagc atctttcgct tggtctttag
     9961 atacagcttc catattatta aatttcaatg gtttcgcatc tgtttcttta cgaatcgtat
    10021 ctgtcacctt gtttgcaacg ttttcttcgt aaagaatata tttcgcaccc gtttcattaa
    10081 tttctttcac aatttcagtc aattcttttt gtgatgggtc ttcagcattt aaactttgaa
    10141 cgcctttttg tacaaaacca taacgatcag ctaaataacc taatgattca tgtgaaataa
    10201 ataccgcatg accttgatga tcttttgtca catcttttaa ctctctatca atgctgtcta
    10261 aatcttttaa tactttgtct gcatttttat catattctgc tttatgttta gggtcacgtt
    10321 tgcttaaatc atcacgaatt gcagatacga attttttatc taattgtgga tctaaccata
    10381 cgtgtggatc ataacctcca tgatgatggt ggtgctcatg ttcatcatgc gcttcactgt
    10441 gcttgtgtcc ctcttcccca tgctcttcat gttcaccgtg ttcttcatgc tcaccatgtt
    10501 cttcatgctc accgtgttct ccatgctcac cgtgttcttc atgttcacca tgttcttcgt
    10561 gctcaccatg ttcatgttgg tctgttaata aagtggcttt atctaaacta ctttctaatg
    10621 ataatttatg atcatctttc ttaatcgcat ttgctacttt tttcgctaca gggtctagat
    10681 catcaccagt ataaatgaat aaatcagact tgcttgcatc gataatatct ttttgtgtcg
    10741 gctcaaagct atgcaagtct gcccctttcg gataaataga atctacttca acatgctcac
    10801 caccaatttg tttaacaaac gattgtaatg ggaaaaccgt cgttgttact tttaattggt
    10861 cgtttgatga tgctttatcg tcaccttgac cacaagccgc taacatagaa cccgacaata
    10921 ccacagtcgc taataatttg aaactttttt tcatgatgtg gtctcctcct aaaatagtaa
    10981 tgatttcgat ttaaaattat acgctaaaca tttcataagc gcaatatgca tttttaaaat
    11041 cattatttt
//
LOCUS       DANHOL010000080        10904 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.080, whole genome shotgun sequence.
ACCESSION   DANHOL010000080 DANHOL010000000
VERSION     DANHOL010000080.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 10904)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10904)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10904
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.080"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(188..949)
                     /gene="map"
                     /locus_tag="PTC08_001513"
     CDS             complement(188..949)
                     /gene="map"
                     /locus_tag="PTC08_001513"
                     /EC_number="3.4.11.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I methionyl aminopeptidase"
                     /protein_id="HDK5683022.1"
                     /translation="MIVKTDEELQALKEIGAICAEVRDTMREATKPGVTTKELDQIAK
                     DMFEQAGAISAPIHDENFPGQTCISVNEEVAHGIPSQRVIREGDLVNIDVSALKNGYY
                     ADTGVSFVVGETSEPMKQKVCDVAEEAFEAAMKKIKPGSKISQIGKAVHAVARKNDLT
                     VIKNLTGHGVGQSLHEAPAHILNYFDPHEKLLLKEGMVLAVEPFISSNATYVTEGKNE
                     WAFETKDKSYVAQIEHTVIVTKDGPVLTTKIDRDE"
     gene            1046..2044
                     /locus_tag="PTC08_001514"
     CDS             1046..2044
                     /locus_tag="PTC08_001514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic acid exporter family protein"
                     /protein_id="HDK5683023.1"
                     /translation="MKGKWYKNLVGARTLKTGLATFLTALFCLSLDLNPIFAILSAVV
                     TIEPTVKASIRKGYKRLPATVIGAFIAVVCTYFLGDDSALTYGLTATLTILLCIRLNL
                     HVGITVATLTALAMIPDIHEDYYFNFFSRLLTAFIGLGTAGLVNFIIMPPKYYDQIDV
                     LIEKTEREIYHLFDTRMKELVIGLFHSKKSDQAVQKLHVLNARIEELLGYQKDELNYH
                     KSRSQSDEWLRLRRLTNRAHENRLMITHLSNIIYLPNDTMMIFTDEEKIAMISISQRM
                     DQIFNCGTFKPEKKAASTLKNSVKGLNEFDDNQVKSHTIYEILLIYRILLLRYKVK"
     gene            complement(3013..3735)
                     /locus_tag="PTC08_001515"
     CDS             complement(3013..3735)
                     /locus_tag="PTC08_001515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine amidotransferase"
                     /protein_id="HDK5683024.1"
                     /translation="MHELTVYHFMPDKLNLYSDIGNIMALKYRAKKRGIHLNVVDVND
                     TENVDLSKADIFFIGGGSDREQSLATESLRKIKTELKAAIEDGLPGLTVCGGYQFLGE
                     KYITPDGQELEGLHILDFYTESKKERLTGDIVIESDTFGTIVGFENHGGRTYHDYDTL
                     GTVTHGYGNNDTDFKEGIHYKNLLGTYLHGPILPKNHEMTDYLLKAAAERKGIPFEPL
                     HIDNAEEEQAKQVLVDRARKRK"
     gene            complement(3737..5047)
                     /locus_tag="PTC08_001516"
     CDS             complement(3737..5047)
                     /locus_tag="PTC08_001516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mur ligase family protein"
                     /protein_id="HDK5683025.1"
                     /translation="MRQWTAINMAKLARKASRATGRKGTDLPGQVARKIDQNILRKLA
                     GRVDEVVFVSGTNGKTTTSNLIGHTLKANHIEIIHNNEGANMAAGITSAFIVQSTPQT
                     KIAIIEIDEGSIPRVLNEMTPTKMVFTNFFRDQMDRFGEIDIMVNGIISAIENKGIQL
                     LLNADDPFVTRLKIASDHVTYYGMQAHAYEFEQSTMNESRYCPNCGSLLNYSHIHYNQ
                     LGHYTCHCGFKRETPQYEIASFTVDPFIEMTVNDTTFNMKIAGDFNAYNALAAYTVLR
                     ELGLSDTSIRKGFETYTSDNGRMQYFEKGQKKALINLAKNPAGMNASIAMGEKLDESK
                     VYVLSLNDFAADGRDTSWIYDADFEKLNEQTIEAIIVTGSRAEELQLRLKLAEVTAPI
                     ILEKDIYKATALTMDYNSFTVAIPNYTSLAPMLEQLNRSFKEVD"
     gene            5244..5747
                     /locus_tag="PTC08_001517"
     CDS             5244..5747
                     /locus_tag="PTC08_001517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin"
                     /protein_id="HDK5683026.1"
                     /translation="MLNEKLLNALNRQMNHEFFAAHAYMAMASYCDYHSYEGFANFYI
                     QQAKEERFHGQKIYDYINDRGEQAVFSQLDAPKVEFNSILETFEDGLKQEQDVTHRFY
                     DLSEIAHEYKDYATISFLNWFLDEQVEEESMFETHIDYLKRIGDDSNALYLYEKELAA
                     RKFEVEV"
     gene            6036..6596
                     /locus_tag="PTC08_001518"
     CDS             6036..6596
                     /locus_tag="PTC08_001518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HDK5683027.1"
                     /translation="MMENSFVALDFETANYKRTSICSVGMVKVVANEIVETFYTLVNP
                     NDFFAARNIEVHGIQAKHVQHSPNFAYVYPYMMQFIGDLPVVAHNAAFDMSVLHASIQ
                     AENLITPPMTYFCSYQLAKRTVSARRHGLKHMMSHFNLDFHGHHDALNDAKACAMITY
                     RLLKHYPSLNNVLQVYGKQLTDKDML"
     gene            complement(6591..7661)
                     /gene="dinB"
                     /locus_tag="PTC08_001519"
     CDS             complement(6591..7661)
                     /gene="dinB"
                     /locus_tag="PTC08_001519"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011302771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase IV"
                     /protein_id="HDK5683028.1"
                     /translation="MKERRIIHIDMDFFFAQVEVRDHPSLRGKPVIVGGKASGRGVVS
                     TASYEARAFGVHSAMPMARAYQLCPNGYYVTPRFEAYREVSQQIMEIFKSYTELVEPL
                     SLDEAYLDITELVRPDLPASKIAEYIRRDIYNQTQLTASAGVSYNKFLAKLASGMNKP
                     NGLTVIDYQNVHDILMQLDIGDFPGIGKASKEKMHAKGIYNGQDLYEKSERELVYLFG
                     KRGHQLYQRVRGYDDREVKAERIRKTVGAERTFSLDTNDDEEILQKIEMLSEKIAQRL
                     EKMNQAGRTVTVKIKTHRFENFSKQQSLITPVQDADEIYRIAYDLYYELKEAEVPIRL
                     VGVTAGGLQDAFFRNMTIYDFL"
     gene            complement(7766..8308)
                     /locus_tag="PTC08_001520"
     CDS             complement(7766..8308)
                     /locus_tag="PTC08_001520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3267 domain-containing protein"
                     /protein_id="HDK5683029.1"
                     /translation="MYKIDLFQNQQIMKRFLLLQFIVILAFIVLSYKWSMAAISLQEQ
                     HFSTNLFIGIIGFLVTVLCHEGIKTILLKMMSVKTRRYQVKNGVLLTFLPQYYFNRMT
                     FSTVMLMPVALVGMLLFIVFINMPYTSIIFTFAIYMGYSLLSFYLVFLALRDKKAQYI
                     EMTEAGLLVSRKKPAERTAH"
     gene            complement(8698..9875)
                     /locus_tag="PTC08_001521"
                     /pseudo
     CDS             complement(8698..9875)
                     /locus_tag="PTC08_001521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613470.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            complement(9868..10904)
                     /locus_tag="PTC08_001522"
                     /pseudo
     CDS             complement(9868..10904)
                     /locus_tag="PTC08_001522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729391.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="SPASM domain-containing protein"
BASE COUNT         3423 a         2188 c         1759 g         3534 t
ORIGIN      
        1 aatatctaat cgattcaaat attgatgaaa cagttgttga taaacctcac gaaaaaactt
       61 ttcaaaataa ctttttaata gttgtaacat tttagaatca cctctaacgt tacccctatt
      121 ataaaatggt tctataacct tgataatagg ctacagaacc atttcccttt aagacttaag
      181 tccgaatcta ttcatcacgg tcgattttcg ttgtgagtac aggaccgtct tttgtcacaa
      241 tgacagtatg ttcgatttga gcgacataac ttttatcttt cgtttcaaat gcccactcat
      301 ttttaccttc agtgacatat gtcgcattag aagaaataaa cggctcaaca gcaaggacca
      361 tcccttcttt taacaacaac ttttcatgcg gatcgaaata atttaaaatg tgcgcaggtg
      421 cttcgtgtaa agattgaccc acaccgtgac ctgttaagtt tttaatgaca gtcaaatcgt
      481 ttttacgcgc cacagcatgc accgccttac caatttgact gattttagaa cctggcttaa
      541 tttttttcat tgcagcttca aaagcttctt ctgcaacgtc acatactttt tgcttcatcg
      601 gctcactcgt ttcacctaca acgaacgaaa cgcccgtatc cgcgtaataa ccatttttca
      661 atgctgagac gtcaatattc accaagtcac cttcacgaat gacacgctga cttggaatcc
      721 cgtgagcgac ttcttcatta acactaatac aagtctgtcc agggaaattt tcatcatgaa
      781 tcggcgcaga aattgcaccc gcttgttcaa acatatcttt agcgatttga tcaagttctt
      841 tcgttgtcac gcctggctta gtcgcttcac gcattgtatc acgaacttca gcacaaatcg
      901 cacctatttc ttttaatgcc tgtaattctt cgtctgtttt tactatcatt gttatcccgt
      961 tccttctaaa agtttataca gtccttatta taacaaaaaa tttttgatat actaataatg
     1021 aactacgaaa caggagatac gaactatgaa gggtaaatgg tataaaaatt tagttggtgc
     1081 acggacgctt aaaacagggt tagctacttt tcttactgcg cttttttgtt tgtcactcga
     1141 tctcaaccct atttttgcaa ttttatcagc cgtcgtaacg attgaaccca ctgtcaaagc
     1201 ttccattcga aaaggttaca aacgacttcc agccacagtc attggtgcat ttattgctgt
     1261 cgtctgcact tactttttag gtgatgactc ggcactcact tatggtttga ctgcaacttt
     1321 aaccatctta ctttgtattc gcttgaactt acatgtcggg attacagttg cgacacttac
     1381 cgctttagca atgattccag atatacacga agattattat ttcaactttt tttcacgctt
     1441 attaacagcc ttcataggat taggtacagc aggactggtg aacttcatca taatgccacc
     1501 gaaatattac gaccaaatcg atgtccttat tgaaaaaaca gaacgtgaaa tttaccattt
     1561 atttgatacg cggatgaaag aactggtcat cggcttattt cactctaaaa aaagtgatca
     1621 agcggtacaa aaattgcatg tattgaacgc acggattgaa gaattactcg gataccaaaa
     1681 agatgaattg aattatcata aaagtcgcag tcaatccgat gaatggttgc gtttaagacg
     1741 gttgacaaat cgcgcgcatg aaaatcgact gatgattaca catttgtcga atattattta
     1801 tttaccaaat gatacaatga tgatttttac ggacgaagaa aaaattgcga tgatttcgat
     1861 atcacagcgg atggatcaaa tttttaattg tggcacgttt aagccggaga aaaaagctgc
     1921 atcgacattg aagaactcag tgaaaggttt gaatgagttt gacgataacc aagttaaaag
     1981 tcataccatt tatgagattt tgttaattta tcgtatttta ttgttgcgtt ataaagtcaa
     2041 atagagtgta taaaagtgag tgcgaaccat tcatacactt cttatataat tgaccgggaa
     2101 tgggacataa aattttgatg ccattgatgc attttcatct aattgcctca tttatcacct
     2161 ttttaaattc tcacaattgc tatcatggac tcgcgttcct aggggacttg cctcaactag
     2221 ccaacgcttt attgagctgt taaatatgaa tgaagcgttg gcggattttc ggctacgtct
     2281 gatccctcag gagtctcgtc cattttagca atttgaattt aaatgctgtg aatcaatgaa
     2341 acgagctgat aagatgaaac aatcaaaaat ttttatcccc attcacctta attaatttta
     2401 tatttctata ttttgctttt cgttcatcgt aggagagggg ctcggaaact caatgtccta
     2461 cccctgttct ttcaattttt aaacacttta ttttcaatga gactaacagc aatgggtcat
     2521 ttaaaaatct ctttacgttt gttcgctccg gtgaaatgag tgaataacaa ttttggttta
     2581 tatgaaaatc tgacctcttt tgcgttcctt cccgaaaact ttaaaacaag ttctattctc
     2641 tactttagcg taaaaaaatg gagcaaggca ctgctatcgc tcactccatt ttgaaatatg
     2701 tattttatat aatggacact accgcaacac actgctgtct caaaaagctt ctaagtgcac
     2761 actcaaagtt ataagaaaaa aaacacaatt cttgatgtat tgaatcgctt tattcacata
     2821 aacctgcctg cttcttttaa caattaacgt aaaattgccc caatggacga gactcttgag
     2881 acttcagccc ctaagaacgc gagtccatta agggcaatta cagttaatat gaatgtttaa
     2941 atttagataa aggcaggttt atagaataac ctcattaaaa atacatcaaa aattgtgtcc
     3001 gagccgctag attcattttc tcttacgcgc acgatccact aatacttgtt tggcttgttc
     3061 ttcttccgca ttatcaatat ggagtggttc gaacggaatg ccttttcgtt ctgcagcggc
     3121 tttcaataaa tagtccgtca tctcatggtt tttcggtaaa atcggcccat gtaaatacgt
     3181 ccctaacaag tttttataat gaatcccttc tttaaagtcg gtatcattat taccgtaacc
     3241 gtgcgtcaca gtgcctaatg tatcataatc atggtacgtg cgaccgccat gattttcaaa
     3301 accgacgata gtgccaaacg tatcactttc gatcacgata tcacctgtta gacgctcttt
     3361 ttttgattct gtataaaagt ctaaaatgtg taagccttcg agttcttgcc catccggtgt
     3421 aatatacttt tcacccaaaa actggtatcc cccacaaact gtgagacccg gtaagccatc
     3481 ttctattgct gctttcaatt ccgttttaat tttgcgtagt gattccgtag ccaaactttg
     3541 ttcacggtca cttccaccac cgatgaagaa aatatccgct ttagaaaggt cgacattctc
     3601 agtatcattt acatcaacaa cgttaagatg aataccacgc tttttggcac gatatttcaa
     3661 cgccataatg ttgccaatat cactatataa attgagtttg tctggcataa aatgatagac
     3721 agtgagttca tgcatattaa tcgacctcct taaatgaacg attcagttgt tcgagcattg
     3781 gtgctaatga tgtgtagttc ggtatcgcaa ctgtaaaact gttgtagtcc atcgtcagcg
     3841 ccgttgcttt ataaatgtct ttttctaaaa taatcggtgc tgtcacttcc gcaagtttta
     3901 atcgcaattg caattcttcc gctcgtgaac ctgttacaat gattgcttct atcgtttgtt
     3961 catttaactt ttcaaagtca gcatcataaa tccatgacgt atcccgacca tcagctgcaa
     4021 agtcgttcag gctcaagaca tacacttttg attcatctaa cttttcaccc atagcaatcg
     4081 atgcgttcat gccagccggg tttttcgcca agttaatcag tgcctttttc tgtccttttt
     4141 cgaaatactg catacgacca ttatctgaag tatacgtttc aaaaccttta cgaatcgatg
     4201 tatcacttaa acctaattct cttaatactg tatatgctgc aagtgcattg tatgcgttaa
     4261 agtcacctgc aattttcata ttaaaggtcg tgtcattgac cgtcatttca ataaaggggt
     4321 ccacagtaaa tgaagcaatc tcatattgcg gtgtctctcg cttaaagcca caatgacatg
     4381 tgtaatgacc gagttggtta taatgaatgt gggaataatt cagcagtgac ccacagttcg
     4441 gacaataacg actctcattc atcgtggact gttcaaattc gtacgcatgg gcttgcatcc
     4501 cataatatgt gacatgatca cttgcgattt tcaaacgtgt cacaaatgga tcgtcagcat
     4561 ttaataataa ctgaatacct ttattttcaa tggctgaaat aatgccattt accataatat
     4621 cgatttcgcc aaaccggtcc atttgatctc tgaaaaagtt tgtaaatacc attttagtag
     4681 gtgtcatttc atttaaaaca cgtggaatag agccttcatc aatttcaatg atggcgattt
     4741 tcgtttgagg tgtcgattgg acgatgaaag ctgaagtgat cccagcagcc atgttcgcac
     4801 cttcattgtt atgaataatt tcgatatgat ttgctttaag cgtatgaccg attaaattcg
     4861 atgtcgttgt tttaccattt gtaccactaa caaacacgac ttcatccaca cggccagcca
     4921 gtttacgtaa aatattttga tcaattttgc gcgcaacttg gcctggtaaa tctgttcctt
     4981 tacgccctgt tgcacgactt gcttttcttg cgagctttgc catattaatt gctgtccatt
     5041 gtctcatatt caacattctc ctccgatttc ctacaatatt atatcatggt gacacaaatt
     5101 accaaataaa aagataatcg ctcaacatcg actgacgacc gatgtacatt ttgataaaaa
     5161 actcttaata caacgttctt ttgaatattg ttcacaatat agggtacaat gaataaatac
     5221 caaagatttt aggggtgatt gatatgttaa atgaaaaatt attaaatgca ttaaatcgtc
     5281 aaatgaacca tgaatttttt gcagcacatg cttatatggc gatggcttct tactgtgatt
     5341 atcattcgta cgagggcttt gcgaattttt acatccaaca ggcaaaagaa gaacgtttcc
     5401 atggtcaaaa aatttatgat tacattaacg accgtggaga acaagccgtt ttcagtcaac
     5461 ttgacgcacc aaaagttgag ttcaacagca ttcttgaaac atttgaagac ggtttaaaac
     5521 aagagcaaga tgtgacacac cgtttttatg atttatctga aattgcacat gaatataaag
     5581 attatgcgac aatttcattt ttaaattggt ttttagatga acaagtggaa gaagaatcaa
     5641 tgttcgaaac acacatcgat tatttaaaac gtattggtga tgattcaaat gcgctttatc
     5701 tttatgaaaa agaattagcg gcacgtaaat ttgaagttga agtataaaca atcattatag
     5761 accaaattta ctttccgcat aaaaggctag gtaaacaccc ttgtaaccta gcctttcttt
     5821 ctacagatat agaacatggc tttctggcaa aaatccccta ctgaatgcta aactggacaa
     5881 atttgtactt aacttgttct catttcttga ttggtttcaa ataccgagaa tgaaatctta
     5941 ttcatttttc cacaaaccgc ttcaacatca tcttattttt atctctcgtc caaatgtgct
     6001 aatatttagc tattattttg aaaggaagta tggctatgat ggaaaatagt tttgttgcgc
     6061 tcgattttga aactgccaat tataaacgga cgagcatttg ttcagtcggt atggtgaaag
     6121 ttgtcgccaa tgagattgta gaaacttttt atacgttagt aaatccgaat gatttttttg
     6181 cagcacgtaa tattgaagtt cacggtattc aagcaaaaca cgtacaacat tcgccaaatt
     6241 ttgcgtacgt gtatccctac atgatgcaat ttataggcga tcttccagtc gttgcacata
     6301 atgccgcctt tgatatgtca gtcctgcacg ccagcatcca agcagaaaac ctcatcacac
     6361 caccaatgac ttacttttgt tcatatcaac tcgcaaaaag gacggtatct gcacgtcgcc
     6421 atggcttaaa acatatgatg tctcatttca atcttgattt tcatggtcat catgatgctt
     6481 taaatgacgc gaaagcctgt gcaatgatta cgtatcgttt gctgaaacac tatcctagcc
     6541 ttaacaatgt cctccaagtt tatggcaagc aactgactga taaagatatg ttataaaaag
     6601 tcataaatcg tcatgtttct gaaaaaggca tcttgcaaac cgcctgccgt cacaccgact
     6661 aaacgaatcg ggacttctgc ttctttcaat tcataatata aatcatatgc aatgcgatat
     6721 atttcatcgg catcttggac aggcgtgatt aaactttgtt gcttggaaaa attttcaaag
     6781 cgatgtgttt taatttttac tgtaaccgta cgtcctgcct gattcatttt ttcgagacgc
     6841 tgtgcaattt tctcgcttaa catttctatt ttttgtaaaa tttcttcgtc atcgttcgta
     6901 tcgagtgaaa atgtccgttc cgcccctaca gttttccgaa ttctttccgc ttttacttct
     6961 ctatcatcat agccgcgtac acgttgatat aactgatgtc ctcgtttacc gaataaatag
     7021 accagttcgc gctcagattt ttcgtataag tcttgaccat tataaatccc ttttgcatgc
     7081 attttttctt tcgatgcttt gccaatacct ggaaagtcac cgatatcgag ttgcattaat
     7141 atgtcgtgta cattttggta atcaattacc gtcagaccat ttggcttgtt catcccactt
     7201 gcgagctttg ctaaaaattt attataagat acacctgcgc tcgctgtcag ttgtgtttga
     7261 ttataaatat cgcggcgaat atattccgca atttttgaag ctgggaggtc tggacgaaca
     7321 agttctgtaa tatccagata ggcttcatca agtgaaagcg gctcgaccaa ttcagtataa
     7381 cttttaaata tttccataat ttgttgtgat acttcacggt aggcttcaaa ccgtggtgtg
     7441 acataataac cattcggaca cagttgataa gcacgcgcca tgggcatagc tgaatgaaca
     7501 ccaaaggcac gcgcttcata ggatgctgta gagacaacac cgcgtccact cgctttacca
     7561 ccgacaatga ctggcttgcc tcgtaaactc ggatgatctc tcacttcgac ttgtgcgaag
     7621 aaaaagtcca tatcaatatg aatgattcgc cgctctttca cataagcccc tcctttctat
     7681 ctcttcattt ttatccactt tttgattgcc ctttcaaaaa caaagaacct tcacacgcca
     7741 gtaaaaacgc ggaagatcca tcctatcaat gtgcagttcg ttcagctggt tttttgcgag
     7801 aaaccaataa ccctgcttca gtcatttcaa tatattgtgc ttttttatct cttaacgcta
     7861 aaaagactaa gtagaacgac aataggctat aacccatata aatcgcaaac gtaaaaataa
     7921 tcgacgtata gggcatatta ataaatacaa taaacaacaa catcccaact aacgcaacgg
     7981 gcattaacat cacagtagaa aatgtcattc ggttgaagta atattgcgga agaaatgtta
     8041 ataagacacc gtttttcacc tggtaacgac gtgtcttcac ggacatcatt ttgagtaata
     8101 tcgtcttaat cccttcatga cataacactg tcactaaaaa tccaatgatt cctatgaaaa
     8161 ggttggttga aaagtgttgc tcttgtaatg aaattgccgc catcgaccat ttgtaactta
     8221 atacaatgaa cgcaagaatg acaataaatt gaagtaataa aaaacgtttc atgatctgtt
     8281 gattttgaaa tagatcaatt ttatacatgc attcaccctc ttatgatgta tcgttaggct
     8341 tcatggtcat tcttattata ccttagctat gcaagcaaat tgtaagactt aagccctaaa
     8401 tttatcccat cgatcacaat gttcatttac ttccatattc atgaggtgtt gaagacacat
     8461 ttcagctaat agtttagcac ttttcatcag attttgaaat atttcaatct tacagaggat
     8521 atctcctttt tgcttcaact ccaaatatca tttatatagt aggaccattc atagatattg
     8581 atttgcatac atttgacatc gttttgctca ttgattaagt gcaaaaaaga cacttatatg
     8641 ttataagtgc ctcatcaagt gattatatgg actgtagaaa aatgcacaca tgaaatgtca
     8701 gacgatttgc tttctttttt taaatactag caaacacgcc aataataaac aaatgacgac
     8761 aatccaaaaa ctgaagatta ccccaaaaac atcagtgatt gaactcatca caaaaacaaa
     8821 acttgaaaat gcgagtgtag agatgacctc aaatacagaa aaaacattga ccaaatctgc
     8881 ttcatccaca atttcctgta aaaaaacgcg ttctgctatt tcttttaact gagaaagcac
     8941 acccataatt aatgagaata ttaaaaaagc cgaagcattc ttaaattcaa taattaaaac
     9001 tgttactata gccatgaaca ttaaagaaaa aaagatgctt tgccatttat attgcagtat
     9061 tttgtctgat aatcgaaaaa cgatgatagc gcttaacaaa ataccaatag aataagtggt
     9121 atttgcatat ccccaataac tttcatcttt atgcaagtat tcattcacaa acactagaat
     9181 aaccgatgac acccagatcg tattcgccaa tatttctaaa agattcgctt gtacaaaaaa
     9241 tcgtagttta ggctcaacaa tgattaagcg ccatcccctc gtcaatgttt ctatatttgt
     9301 ctcagattct atcacttttg ttttgacagc tggtaacatc aaaaatagaa ttgtggatat
     9361 gacatataaa aataaaatga ttacagtact cattatcaaa cctaaagtgg catataataa
     9421 tccacctaat ccccacccca ctagttctac actttcacca ctcattgaaa gcgcggcatt
     9481 ggtttttcct aaatctgttg catagattgg cacgatggca aaagctacag gtgcttcaaa
     9541 tccatcaagt atagaaattg taacaacaaa aaagtacaaa atcgaaatat caatcacttc
     9601 gctataacac attaacccaa gaagtaatcc tagcgaaatc gttttacaca attgtgtata
     9661 tgaaagcacc cgatttaata acattttttt ggtaactaaa gggactaaaa acttgcaata
     9721 aaagaagata aacctatcag aataggcacc attgatgtcg caatgactga ctttgtgatg
     9781 gtgaatacat ttgcaatgac tacaactcta agaaacacat cagctaaatt actaactgct
     9841 tgagaaatca ataattgttt gattgcctta gtcatttctg ttcagtttct cccttacttg
     9901 tggaattaaa atggcctcca caaacttttc aaattccttt ttttccatct catattgttt
     9961 aacaaaatca atgtcagcag ataacttaca cccaccagaa caaaaaccgc ctatatgaca
    10021 aatctgacaa tctttataat ctaagaagct ttttgtttca tgttggtagt tcattaaatc
    10081 aatatctttt aagtttccta aaatatattg agggcgccct actgttacag tacatctaaa
    10141 caaattaagt tcattgtcaa tatagaaaac tctatcatag ggagacacgt tccagcagta
    10201 atgatatgtg cctttaattt gagattcatt aaaagacaag ttcaatttat cagttaagtt
    10261 cttgcacgtt tgaataaagc ctgcatgaag gtttgatggt actggtttag gtatttttca
    10321 ttaattgtag aagtatatca gtctcagaaa caatatattc atcataacca gtatcaaaaa
    10381 gacgatcgtc aacccttccg atattccaat gaaaattcca ctttgaaaaa taccctttgt
    10441 cgaaaaaata gtgatagatt ggcaacagtt cacttaaatt atttctatca aaatttgtcc
    10501 ccacatctac aactatatta tagtgtaata ataaatcagt aacagctaat aattcctcaa
    10561 cattgtttgc aactttcgtt attttaattg tctcattata tttgtccggt aacgtattaa
    10621 tagtaattgc tataacagat ataatacttc tatgtatcac tatctttttg gcaaaataag
    10681 gcaaaaagct tccgttagta gtaatgtcta tcttcaattt gttttcaaca caatattgaa
    10741 aaactctatc aataattttt tcattttgtg gcaatagtgg ttccccacca aataacccaa
    10801 tagaaacatc aacttctgga ttttgataaa ggattaatga aatcttatct aaaatttttt
    10861 caagtgcttc tatagttatt ggttttctaa cgagatgatc atag
//
LOCUS       DANHOL010000081        10851 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.081, whole genome shotgun sequence.
ACCESSION   DANHOL010000081 DANHOL010000000
VERSION     DANHOL010000081.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 10851)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10851)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10851
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.081"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            398..499
                     /locus_tag="PTC08_001523"
                     /pseudo
     CDS             398..499
                     /locus_tag="PTC08_001523"
                     /inference="COORDINATES: protein motif:HMM:TIGR03715.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="KxYKxGKxW signal peptide domain-containing
                     protein"
     gene            complement(1932..2441)
                     /locus_tag="PTC08_001524"
     CDS             complement(1932..2441)
                     /locus_tag="PTC08_001524"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683030.1"
                     /translation="MKSTVIPLHLLIGYVQSTDFLKSTVILPHLLIDSAQLTDFLKST
                     VILPHLLIDSAQLTDFLKSTVILPHLLIDCVRSTDFLKSTVILPHLLIGCVQSTAFLK
                     SIVILLHLLIGCVQSTDFLRSIVILLHLLIGCVQSTDFLRSIVISPQIDFSRWIAILL
                     HLPNDLRLQ"
     gene            complement(2446..2820)
                     /locus_tag="PTC08_001525"
     CDS             complement(2446..2820)
                     /locus_tag="PTC08_001525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683031.1"
                     /translation="MLFDLLNDADSLAATDWLLEIDCDFATLADWLCAIDFLTDNDFD
                     FLTEIACDLFAELDFLTESECDFLTEAAFDFLIQLDLFTESECDFAALSELLIDIDCF
                     LDNDIDRLSDSLAATDWLFAID"
     gene            complement(3046..3510)
                     /locus_tag="PTC08_001526"
     CDS             complement(3046..3510)
                     /locus_tag="PTC08_001526"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683032.1"
                     /translation="MLFDLLNDADSLAATDWLLEIDCDFATLADRLNDVDFSALTELL
                     SDVLFDLLSDADSLAATDWLLEIDCDFATLADRLNDVDFSALTELLSDVLFDLLNDAD
                     SLAATDWLLEIDCDFATLADRLNDVDFSALTELLSDVLFDLLNDADSLAATD"
     gene            complement(4555..6147)
                     /locus_tag="PTC08_001527"
                     /pseudo
     CDS             complement(4555..6147)
                     /locus_tag="PTC08_001527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002470141.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(7138..8208)
                     /locus_tag="PTC08_001528"
     CDS             complement(7138..8208)
                     /locus_tag="PTC08_001528"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683033.1"
                     /translation="MLNDAESLSDTDVDVDALSESLVDVLVDLLSDAESLSDTDVDVD
                     ALSESLVDVLVDLLSDAESLSDTDVDVDALSESLVDVLVDLLNDAESLSDTDVDVDAL
                     SESLVDVLVDLLNDAESLSDTDVDVDALSESLVDVLVDLLNDAESLSDTDVDFDALSE
                     SLVDVLVDLLNDAESLSDTDVDVDALSESLVDVLVDLLNDAESLSDTDVDFDALSESL
                     VDVLVDLLNDAESLSDTDVDVDALSDSLVDVLVDLLNEAESLSDTDVDVDALSKSLVD
                     VLVDLLNEAESLSDTDVDVDALSESLVDVLVDLLNEAESLSDTDVDVDALSESLVDVL
                     VDLLSDAESLSDTDVDVDALSE"
     gene            complement(8374..8529)
                     /locus_tag="PTC08_001529"
     CDS             complement(8374..8529)
                     /locus_tag="PTC08_001529"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683034.1"
                     /translation="MTDVTSLTEVLADVLSEAELLNDALVEFEPLVDVDSDFSIDVDV
                     EADKLLD"
     gene            complement(8587..8844)
                     /locus_tag="PTC08_001530"
     CDS             complement(8587..8844)
                     /locus_tag="PTC08_001530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683035.1"
                     /translation="MCSETLIDSESINALSDSDNDVDTDAEARLESPLLNDAEVLSDT
                     CLSCNALAESDDDFEVDADVLLETSPLIDAESLNDAFSEAN"
BASE COUNT         3805 a         2276 c         2205 g         2565 t
ORIGIN      
        1 cattatatat ggaatgacac tgacttagtg atctgaagaa taaatatttt tatgtttatt
       61 tgttatcaca aaaatattat cgtaaatatt aaatttgtta aatataaaac ttaacggtag
      121 tgctacatgt gcttttattt atgcttttta aaaaaaccta ccttgattta agctatcttt
      181 tcttttcgat tttgctattt tttacatcaa tgcaaaaatc ccaataacaa aataaaaaca
      241 taatttaata taagtaaatt ctaataatga aatgcgttat ataactaaca gtataatgtt
      301 taaaattaag ttgcctaacg cttagaatcg tattattatc tattaatgca gtggtggaat
      361 ttttatcttt tgaaatttat catatgggag ttttgcaatg acaagaaaat ttagggaatt
      421 taagaaaagt ttaagtgaag aaaaagcaag agtgaaactt tacaagtcag gtaaaaactg
      481 ggttaaagct ggaattaaag aatttcagtt attaaaagca ttaggcttat cttttttaag
      541 ccatgacatt gtaaaggatg aaaatggaga agtaacgaca caatttgggg aacagttgaa
      601 gaaaaatgca ttaagaacaa ctgcttttgc gggtggaatg ttcacagtta atatgttgca
      661 tgaccaacaa gcatttgcgg cgtcggatgc acctataact tctgaactgg caaccaaaag
      721 tcaaactatt ggcgatcaaa catcaattgt tattgaaaag tctacatcgt cagatcaatc
      781 aacgaaccca ataacagaaa gtgaaagtaa acacgattct gaaagtatct cattatctga
      841 gcatcaaaca tcagagtcaa caagtctttc aacgtcaact tccaaatcaa tatcaacttc
      901 agtagaggaa tcagaatcaa catcaaaaga ttctcatact aaaactcaag atagtcaatc
      961 agatagtcat cagtcaacaa gtcaagaggt aaatggctct tccaaccacg agcaatcaac
     1021 accacacact gcacaaagtc ttacgagcct atctattgag agccaaacgt cgacttcaaa
     1081 tacatcattg aaggaaacta aagaagggga attgtcaaaa aacctttcga agttatctca
     1141 aaatcaaaac atcaaacttc atgaagaaca tacgatgcgt tcagcagatt tgaactcagg
     1201 ttatacagga ttcagagcgg cttactatgt accaagatca agaacaacac caacgacaaa
     1261 agtctacaca gggcaaggaa gcttcagagg tagaggcaga atcaagtatg atattttcta
     1321 caaagttgtc gttacaagta atgggaaaga aatgaagatc cgctatacat tgagtcaaga
     1381 taatccaaac acgtctaatg ttgaaaaacc taggtgggca ggacagaaac gatatggtat
     1441 taaaaatggc tgggacgcag gtcctggtcg tggtcaactt aaattaggat cggcattcgg
     1501 taaaccaaca gttagacaag gggtaacaat acaaaattat ggcgtctggg ctgtcggctc
     1561 taatgtcaag ccggtttctg gagatcataa taatggttat tattggcaac ctgctgtatt
     1621 gtcaccaaaa catggggaag caggttatgg tgtaactgct gaaattacag ttccaattgt
     1681 taacccaaca ggaagattta attgggaatt tcaccctgta ggtcaacaag atggtgtcgg
     1741 cggtatgaca gactactttg aaaatgtatg gattcgagac tatgacccat attacaaata
     1801 tattcaaact aatgaaggta gagcctcagt ttcgaactct atttctgagg tgaaggcgag
     1861 tgaatcgaga tccacatcgc tcgtacaatc ggagtctatt agaagatcac agtccatatc
     1921 tgagagtgaa tctattgtag ccgcaagtca ttcggcaagt gtagcaaaat cgcaatccat
     1981 ctcgagaagt caatctgtgg cgaaatcaca atcgatctca agaagtcagt cgattgcaca
     2041 cagccgatca gcaagtgtag caaaatcaca atcgatctca agaagtcagt cgattgcaca
     2101 cagccgatca gcaagtgtag caaaatcaca atcgatttca agaaggcagt cgattgcaca
     2161 cagccgatca gcaagtgtgg caaaatcaca gtcgatttca agaagtcagt cgatcgcaca
     2221 cagtcgatca gcaagtgtgg caaaatcaca gtcgatttca agaagtcagt caattgcgca
     2281 gagtcgatca gcaagtgtgg caaaatcaca gtcgatttca agaagtcagt caattgcgca
     2341 gagtcgatca gcaagtgtgg caaaatcaca gtcgatttca agaagtcagt cgattgcaca
     2401 tagccgatca gcaagtgtag cggaatcaca gtcgatttca agaagtcagt cgattgcgaa
     2461 tagccaatct gtagcagcga gtgaatcaga gagtctatca atatcattgt ctaaaaagca
     2521 gtcaatatcg atgagtaatt ctgaaagtgc agcaaaatca cactcgcttt cggtgaaaag
     2581 gtctaactgg attaaaaagt caaaagcggc ttcagtaaga aagtcacatt cactttcggt
     2641 aagaaaatct aattcggcga aaaggtcaca tgctatttcg gtaagaaagt caaagtcatt
     2701 atcagttaaa aagtcaattg cgcagagcca atcagctagt gtggcgaaat cgcaatcgat
     2761 ttcaagaagc cagtcggtgg cagcgagtga gtcggcatcg ttaagtaagt cgaagagcac
     2821 atcgttaagc aactcagtga gtgcagagaa atcgacgtca ttgagtcgtt cggcaagtgt
     2881 agcaaaatcg caatcgattt caagaagtca atcagtggca gcaagtgagt cggcatcgtt
     2941 aagtaagtcg aagagcacat cgctcagtaa ctcagtgagt gcagagaaat cgacgtcatt
     3001 aagtcgttca gcaagtgtgg cgaaatcgca atcgatttca agaagtcaat cagtggcagc
     3061 aagtgagtcg gcatcattga gcaagtcgaa gagcacatcg ctcagcaact cagtgagtgc
     3121 agagaaatcg acgtcattaa gtcgatcagc aagtgtggca aaatcgcaat cgatttcaag
     3181 aagccaatcg gtggcagcaa gtgagtcggc atcgttaagt aagtcgaaga gcacatcgct
     3241 cagtaactca gtgagtgcag agaaatcgac gtcattaagt cgatcggcaa gtgtagcaaa
     3301 atcgcaatcg atttcaagaa gccaatcagt agcagcaagt gagtcggcat cgctaagtaa
     3361 gtcgaagagc acatcgctca gtaactcagt gagtgcagag aaatcgacgt cattaagtcg
     3421 atcagcaagt gtagcaaaat cgcaatcgat ttcaagaagc caatcggtgg cagcgagcga
     3481 atcggcatcg ttaagtaagt cgaagagcac atcgctcagt aactcagtga gtgcagagaa
     3541 atcgacgtca ttaagtcgat cagcaagtgt ggcgaaatcg caatcgattt caagaagtca
     3601 atcagtagca gcgagtgagt cggcatcatt gagtaaatca acaagtacgt caacaagtga
     3661 ctcagatagc gcatcgacat caacatcagt atcagatagc gactccgcat cgttgagtaa
     3721 atcgacaagc acatcaacaa gcgattcaga tagtgcgtca acatcaacat cagtatcaga
     3781 tagcgactcc gcatcgttga gtaaatcgac aagcacatca acgagtgatt cggacagtgc
     3841 gtcaaaatca acgtcggtat cagatagcac gtcagcatca ttaagcaagt cggcaagtac
     3901 gtcaacgagt gactcagaca gcacgtctac ttcattgagt aagtcgacaa gtacatcgac
     3961 aagtgattca gatagtgcgt caaaatcaac gtcagtatca gacagtacgt ccgcatcatt
     4021 gagtaaatcg acaagcacgt caacaagtga ttcagatagt gcatcaaaat cgacatcagt
     4081 gtcagatagt gactcagctt cgttgagtaa atcgacaagc acgtcaacga gcgattcaga
     4141 tagcgtgtca acatcaacat cagtatcaga tagcgactcc gcatcgttga gtaaatcgac
     4201 aagtacgtca acaagcgatt cagatagtgc gtcaaaatca acgtcggtat cagatagcga
     4261 ttcagcatcg ttaagtaaat cgacaagcac gtcaacaagc gactcagata gtgcgtcaac
     4321 atcaacatca gtatcagata gtgattccgc gtcattaagc aagtcgacaa gtacatcaac
     4381 aagcgattca gacagtgcgt cagcatcatt gagtaagtca acaagtacat cgacaagtga
     4441 atcagatagc gcatcaacat caacatcagt atcagatagc gactcagctt cattgagtaa
     4501 atcgacaagt acgtcaacaa gtgactcaga cagtgcgtca aaatcaacat ctgtgtcaga
     4561 tagcgattca gcttcattaa gcaagtcgac aagtacatca acgagtgatt cagacagtac
     4621 atcagcatca ctaagcaagt cgacaagtac gtcaacaagt gactcagaca gtgcgtcaaa
     4681 atcaacatct gtgtcagata gcgattcagc ttcattaagc aaatcaacaa gtacgtcaac
     4741 aagtgactca gatagcgcat caacatcatt aagcaagtca acaagtacat cgacaagcga
     4801 ttcagacagt acgtctacat cattaagtaa gtcaacaagt acatcaacaa gtgattcgga
     4861 tagtgcgtca aaatcaacat ctgtgtcaga tagcgactcc gcatcgttga gtaagtcgac
     4921 aagtacgtca acgagcgatt cggatagtgc gtcaaaatca acatcagtat cagatagtga
     4981 atccgcgtca ttaagcaagt cgacaagcac atcgacaagt gactcagata gtgcgtcaac
     5041 atcgacatcg gtatcagaca gcacatcagt ttcattaagc aagtcgacaa gcacgtcaac
     5101 aagcgattca gatagcgcgt caacatcaac gtcagtgtca gatagcgatt cagcttcatt
     5161 aagcaaatca acaagtacgt caacaagtga ctcagatagc gcatcaacat cattaagcaa
     5221 gtcaacaagt acatcgacaa gcgattcaga cagtacgtct acatcattaa gtaagtcaac
     5281 aagtacatca acaagtgatt cggatagtgc gtcaaaatca acatcagtat cagatagcga
     5341 ttcagcatca ttaagcaagt cgacaagtac atcgacaagt gattcagata gtacatcagc
     5401 atcattgagt aaatcgacaa gcacgtcaac aagcgattca gatagcgcgt caacatcaac
     5461 gtcagtgtca gatagcgatt cagcatcatt gagtaaatcg acaagcacgt caacaagcga
     5521 ttcagatagc gcgtcaacat caacgtcagt gtcagatagc gattcagcat cattgagtaa
     5581 atcgacaagc acgtcaacaa gtgactcaga cagtgcgtca aaatcaacat ctgtgtcaga
     5641 tagcgattca gcttcattaa gcaaatcgac aagtacatca acaagcgatt cagatagtgc
     5701 gtcaacatca acgtcggtat cagatagcga ctccgcatcg ttgagtaagt cgacaagtac
     5761 gtcaacgagc gattcagaca gtgcatcaaa atcaacgtcg gtatcagata gtgattcagc
     5821 atcactaagc aaatcgacaa gcacgtcaac aagtgactca gacagtgcgt caacatcgac
     5881 atcggtatca gatagcacat ccgcgtcgtt aagcaagtcg acaagtacgt caacaagtga
     5941 ttcagacagc gcatcgacat caacatcagt atcagatagc gactccgcat cgttgagtaa
     6001 atcgacaagc acgtcaacaa gtgattcgga cagtgcgtca aaatcaacat cagtgtcaga
     6061 tagcgattca gcttcattaa gtaagtcgac aagtacatca acaagcgatt cagatagtgc
     6121 gtcaacatcg acatcagtat cggacagtac gtctgcatca ttgagtaagt cgacaagcac
     6181 atcgacaagt gattcagata gcgcatcaac atcagtgtca gatagcgatt cagcatcact
     6241 aagcaagtca acaagtacat cgacaagcga ttcagacagc gtatcaacat caacatcagt
     6301 atcagatagt gattccgcgt cattaagtaa gtcgacaagt acatcaacaa gtgattcaga
     6361 cagtgcgtca acatcgacat cggtatcaga tagcacatcc gcgtcgttaa gcaagtcgac
     6421 aagtacgtca acaagtgatt cagatagtgc gtcaacatcg acatcggtat cagacagcac
     6481 atcagtttca ttaagcaagt cgacaagtac gtcaacgagt gattcagaca gtgcatcaaa
     6541 atcaatgtcg gtatcagata gcgtgtcaac atcaacatca gtgtcagata gcgattcagc
     6601 atcattgagc aagtcgacaa gtacatcgac aagtgactca gatagcgcat cgacatcaac
     6661 gtcggtatca gacagtacgt cagcatcgtt aagtaaatca acaagtacat cgacaagtga
     6721 ttcagacagc gcatcaaaat caacatcagt atcagatagc gattcagctt cattaagcaa
     6781 gtcgacaagc acgttaacga gtgactcaga tagcgcatcg acatcaacat ctgtatcaga
     6841 tagtgactca gcatcattaa gcaagtcaac aagtacgtca acaagcgact cagatagtgc
     6901 gtcaaaatca acatctgtat cagatagtga ttccgcgtca ttaagcaagt cgacaagtac
     6961 atcgacaagt gactcagata gcgcatcgac atcaacgtcg gtatcagaca gtacgtcagc
     7021 atcgttaagt aaatcaacaa gtacatcgac aagtgattca gacagcgcat caaaatcaac
     7081 atcagtatca gatagcgatt cagcttcatt aagcaagtcg acaagcacgt taacgagtta
     7141 ctcagatagc gcatcgacat caacatctgt atcagatagt gattccgcat cactaagcaa
     7201 atcgacaagc acgtcaacaa gtgattcaga tagcgcatcg acgtcaacgt cagtatcaga
     7261 tagcgattca gcttcattaa gcaagtcgac aagtacgtca acaagtgatt cagatagcgc
     7321 atcgacatca acatctgtat cagatagcga ttcagcttca ttgagtaagt cgacaagcac
     7381 gtcaacaagt gatttagata gcgcatcgac gtcaacgtca gtatcagata gcgattcagc
     7441 ttcattaagc aagtcgacaa gtacgtcaac gagtgaatcg gacagtgcat cgacatcaac
     7501 atctgtatca gatagtgact ccgcatcgtt aagcaagtcg acaagcacgt caacaagcga
     7561 ttcagacagc gcgtcaaaat caacgtcagt gtcagatagc gattccgcat cattaagtaa
     7621 atcgacaagc acgtcaacaa gtgactcaga tagcgcatcg acatcaacat ctgtatcaga
     7681 tagtgactcc gcatcgttaa gcaagtcgac aagcacgtca acaagcgatt cagacagcgc
     7741 gtcaaaatca acgtcagtgt cagatagcga ttccgcatca ttaagtaaat cgacaagcac
     7801 gtcaacaagt gactcagata gtgcatcgac atcaacgtca gtatcagata gtgattccgc
     7861 gtcattaagc aagtcgacaa gtacatcgac aagtgactca gatagtgcat cgacatcaac
     7921 atctgtatca gatagtgatt ccgcgtcatt aagtaagtcg acaagtacat caacgagtga
     7981 ttcagacagt gcgtcaacat caacgtcagt atcagatagt gattccgcat cactaagcaa
     8041 atcgacaagc acgtcaacaa gtgattcaga tagcgcatcg acatcaacat ctgtatcaga
     8101 tagtgattcc gcatcactaa gcaaatcgac aagcacgtca acaagtgatt cagatagcgc
     8161 atcgacgtca acatctgtat cagatagtga ctccgcatcg ttaagcaagt cgacaaacac
     8221 gtcaacaagc gattcagaca gtgcgtcaac atcgacatcg gtatcagata gtacgtcggt
     8281 ttcattgagc caatcaacaa gtgtggataa agatagtaca gcgaagggat cgacagaatt
     8341 agtaaatgtt gcatcacttt caatcagtgc gagtcaatca agtagtttat ctgcttcaac
     8401 atccacatcg attgaaaagt ctgagtctac atcaacaagt ggctcaaatt caactaatgc
     8461 gtcgttaagt agctcagctt cacttagtac atcagcaagt acttctgtaa gcgaagtgac
     8521 atctgtcaca cattctgaaa atgatttaag tgcatctaat gatagagata catccggatc
     8581 agtaagtcaa tttgcttctg aaaatgcatc attaagtgat tctgcatcaa ttagtggcga
     8641 agtttctagt agtacgtccg cgtcaacttc gaaatcatca tcactttcag caagcgcgtt
     8701 acatgataag catgtatcag aaagcacttc tgcatcatta agtagtggag attcaagtcg
     8761 tgcttcggca tcagtgtcaa cgtcattatc agaatcagat agtgcgttaa tagactctga
     8821 atcaattagc gtttctgagc acacatcaac attacaatca gatagtcatt cactatcaca
     8881 acaacaatca gcagaattat cacaatcaga gcaaacatca caatcacaac gcatttcaac
     8941 aagtgcgtca gtatcggcta tgaaatcaga aagtgctgct aaggtatctg aatcgctatc
     9001 tacgtctcaa tcaaaagtag atagtcaatc acaatcggta tctgaatcag cgagcaactc
     9061 acgagtgtca agagattcaa aatcaacaag cgcttctatg cgtcgatcat tgtcagagtc
     9121 agtatctcaa agtatgtcac ttattgatca gtcagaaagt gattcaacat ctatatcgat
     9181 ttcgacgtca atcagtgatg aagactctat gctgtattct atgagtgatt ccgcatcgat
     9241 cagtactaag gcatcaagta gtatgtctac ttcgacaagc gaagagcatg tcaacagtca
     9301 ttctcaatct gaatcgacag catcggttga attatctcaa gaaatgagtg catcggcttc
     9361 aacaagcaaa tcagagtctc aatcagagtc agtatcagta agtaacgaag aatcaaatat
     9421 ctcatctatg caagagtctt ttgtagagag tgcaaaagca tcgcgtagtg catctatgag
     9481 cgttgcaaaa tctgaagcct ctgaatcaca gctattaagt gagtctaatg cttcagtaag
     9541 ccaatctgca agcacaagta gtaaagcatc agcaagtacg tcagaatcta tttcaacgtc
     9601 actcagcgta tctgaagcaa ctcatggaaa accgagaaat cattcagaaa gtgcttcagc
     9661 aagtcaatta ttagaagaaa atgagtcatt aagcgattca gcatcaacaa gtgttgaaga
     9721 ttcagaaagt gcatcagcat ctctgtcggt gtatcaatca caatcagcaa gtgcattgaa
     9781 atcaacacat gcatcggaaa aagcttcagt gaatacaagt acaaatgctt cgaagcgtgc
     9841 atcagcatcg acatctatct ctaactcgaa atctaaagtc attgcgagtg aatcgaagtc
     9901 aacaagcata tcaacatatg aatcgttgtc aatatcgact agtaaagaac aatcaacgcg
     9961 tgtatcagtg agtgagtcga catcaacgtc taaagtgaag tcagaaagcg actcggcatc
    10021 aacgtcgaca tctgaatcaa tctcaattag cgcaaatcgt tcaggttaca catcgtctaa
    10081 acgttcggta caaatgagtg aagcacaatc aacgagcgat tcattatcag taatgcaatc
    10141 tgaaggttca gtaagcatat cgcaatcttt aagtgtatca gataagacat cacagtcctt
    10201 atcggaatca atatcgcatt cagaaagtga ctctgatagt aactcagtgt ctattagtca
    10261 agagacatct gaacaacatt cggtgtcaga cagtaactcg acgtcaattt cggaaagcga
    10321 atctattgca tatagtcaat cagcgagtga atcagaatca acaagtatcg caaaatctga
    10381 tagtatttcg aactcattat ctgtttcatt aagtgaatca gaaagtgaag caagcacatc
    10441 agcttcagtg agtacatctg aaagtacgtc tgtaaaagat tctttatcaa caagtatctt
    10501 gaacagtcaa tcagcatcta ctcatcaatc aacagaagct tctcaaagta catcaacttc
    10561 aaaagttgag gaagcatcat tgagtgactc tgcttctgta tcagattcac aatcactttc
    10621 aatgagtcat gagaaatcac aaagtgcatc gacttcaaaa tctacgagtc tgtcaaaaac
    10681 tatttctgag tcagagtctg tgagtgcatc gacatcaaca agtgaagctg taagtacaga
    10741 agcaagcgaa tttgtatcag cagtagactc attgagtcaa gtaacttcta acggaagcac
    10801 aacgaaagaa gatgcaagta catttgtatc cacagtagat tcattgaaag a
//
LOCUS       DANHOL010000082        10758 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.082, whole genome shotgun sequence.
ACCESSION   DANHOL010000082 DANHOL010000000
VERSION     DANHOL010000082.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 10758)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10758)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10758
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.082"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            14..1003
                     /gene="ccpA"
                     /locus_tag="PTC08_001531"
     CDS             14..1003
                     /gene="ccpA"
                     /locus_tag="PTC08_001531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catabolite control protein A"
                     /protein_id="HDK5683036.1"
                     /translation="MTVTIYDVAREARVSMATVSRVVNGNQNVKPETRDKVNEVIKRL
                     NYRPNAVARGLASKKTTTVGVIIPDISNIYYSQLARGLEDIATMYKYHTIISNSDDDP
                     EKEKEIFNNLLSKQVDGIIFLGGTLTDEIKEQISRASIPVVVSGTNGKDDGIASVNID
                     FVQASKEVTAQLVKTGSKKFAFVGGGYSKKAQEDVYEGLKEVLEQHQLAVDEHLLYVG
                     NETYTDGLRAYEKLSHYQPDAVLSISDEQAIGIVHGALDHGLEVPKDIQVVSFNNTRL
                     VEMVRPQLSSVIQPLYDIGAVGMRLLTKYMNNEDIENPNVILPHKIQYRGTTR"
     gene            complement(1122..2279)
                     /locus_tag="PTC08_001532"
     CDS             complement(1122..2279)
                     /locus_tag="PTC08_001532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetoin utilization protein AcuC"
                     /protein_id="HDK5683037.1"
                     /translation="MPNHSQQETGYVYSDALLRYRFHNKHPFNQMRVKLTTELLLSTG
                     YLSESQIITPRQATIDEIAMVHKYDYIQAVMRGEKNLLTPDEQQKYGLDDEDTHVFSR
                     IHRSTATIIGGGLNLVDAIMEGKFRNGCHLAGGLHHAHEGRASGFCVYNDAAIYIKYL
                     NEKYQQRVLYIDTDAHHGDGVQWTFYASNQVMNYSIHETGKFLFPGSGHYTERGTDQG
                     FGYSINVPLEPYTEHDSFLEVFKKTLNQVAESFQPDFIVSVNGSDIHYLDPLTHMSCD
                     LNTLYQIPYIITEVAEKYCGGKQIMLGGGGYNIWRVVPRAWSHIYLSLIHQPRLHGHL
                     PEDWLNKWRHYSPVPIPEYWEEQYDDYQDIPRRPEIAKQNNQVAENILSWF"
     gene            complement(2293..2925)
                     /locus_tag="PTC08_001533"
     CDS             complement(2293..2925)
                     /locus_tag="PTC08_001533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003229296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDK5683038.1"
                     /translation="MKHIKTYEHESYTVDGQTFIIEGPVSKTQLQTYSFDEGLDAFRI
                     PIEQFEAIQDISTLDEGRIYIIRKENHIIGYVTYLYPDPMERWSEGQLPYLLELGAIE
                     ISLAYRGLGLGRMLLKVSTRSPELEDYIIITTEYYWHWDLKNSKLDVFEYKKLMQRMM
                     SNGGLEVFATDDPEITSHPANCLMARIGKNITVDQMEAFDDIRFMNRFFF"
     gene            3092..4801
                     /gene="acsA"
                     /locus_tag="PTC08_001534"
     CDS             3092..4801
                     /gene="acsA"
                     /locus_tag="PTC08_001534"
                     /EC_number="6.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002510208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate--CoA ligase"
                     /protein_id="HDK5683039.1"
                     /translation="MKVEVYKGEQGNFNLTNYQATYDQFDWKEVEKVFSWNETGKINM
                     AYECIDRHVNEKKADKIALNYKDNRRKESYTFKDLQEKSNQAANVLKNKANVQKGDRV
                     FIFMPRTPELYFAFFGILKLGGIVGPLFEAFMEKAVKDRLENSDAKVIITTNSLLSRI
                     PQEQLPNLETIVIVDDEVDVKYVDFNKALATASTAFNIEWLDREDGLILHYTSGSTGQ
                     PKGVLHVQEAMLLHYISGKYVLDFQEDDVYWCTADPGWVTGTSYGIFSPWLHGVTNCI
                     AGGRFSPENWYAMIEDFKVTIWYTAPTALRMLMSAGDDLVEKYDLSSVRSILSVGEPL
                     NPEVIKWAKKVYGKRVLDTWWMTETGGHMIVNYLAEDIKLGSMGKPLPGIEAAIIDNE
                     GNVLPPNRMGNLAVKKGWPSMMRQVWKNPEKYQSYFIGDWYVSGDSAYQDEDGYFWFQ
                     GRVDDVIMTAGERVGPFEVESKLVEHEAVAEAGVIGKPDPVRGEIIKAFVALRQGYEP
                     SDDLKEDIRKFVKEGLAAHAAPREIEFKDKLPKTRSGKIMRRVLKAWELDLPTGDLST
                     MED"
     gene            5117..6784
                     /locus_tag="PTC08_001535"
     CDS             5117..6784
                     /locus_tag="PTC08_001535"
                     /EC_number="6.3.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate--tetrahydrofolate ligase"
                     /protein_id="HDK5683040.1"
                     /translation="MSHLSDLEIANQSTLRPIKEIAEKAGISEEALEQYGHYKAKIDI
                     SKIQTQNGKGKVVLVTAMSPTPAGEGKSTVTVGLADAFQHINQNVMVALREPALGPTF
                     GIKGGATGGGYAQVLPMEDINLHFNGDFHAITTANNALSAFIDNHIHQGNELGIDQRR
                     IEWKRVLDMNDRALRQVIVGIGGPTQGVPREDGFNITVASEIMAILCLSTGIKDLKES
                     ISKITIGYTRDRQPVTVKDLGVEGALAMILKDAIKPNLVQTIEGTPALIHGGPFANIA
                     HGCNSIIATETARDLADIVVTEAGFGSDLGAEKFLNIKSRKANFEPDAVVIVATIRAL
                     KMHGGVAKDQLKEENVVALKAGIKNLERHVENIRKFGVEPVVALNAFIHDTDAEFEFV
                     QQWAKENGVRLSLTEVWEKGGKGGTDLAEKVLEVIREPKQFKRLYELEMPLEEKIEKI
                     VKEIYGGSKVTFTSKAQKQLAQFKANGWDHYPVCMAKTQYSFSDDQTQLGAPSDFEIT
                     IRELEAKTGAGFIVALTGAIMTMPGLPKKPAALKMDVTEDGHAIGLF"
     gene            complement(6859..7758)
                     /locus_tag="PTC08_001536"
     CDS             complement(6859..7758)
                     /locus_tag="PTC08_001536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase domain-containing protein"
                     /protein_id="HDK5683041.1"
                     /translation="MKTKEQRDLTTHTSFARYDFYMRKTKQFIISFVLFMLIGLIFVC
                     GLLLGYFASIVSDSKSLNDHDLVQQVTRLPELDNDQPDNTDYIALYNEQEPSLIAGPA
                     EVSPYVTKALVASEDADFYVHHGVLPKAILRAMFQDIFDTQFPTGGSTITQQLIKNQV
                     LTKERTYDRKAKEIMYAMRIEHILTKDEIIYTYLNLVPFGLDTNGQNVTGITSASYGL
                     FGKPPKTLNLAESAYLIGLLQSPYAYTPFNHDGSLKHEDDVISSIHRQHYVLKRMLVE
                     QMISKDAYDKAVHYDIYTHLYDE"
     gene            8104..9366
                     /locus_tag="PTC08_001537"
     CDS             8104..9366
                     /locus_tag="PTC08_001537"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HDK5683042.1"
                     /translation="MANALLEELSWRGLVYQQTDEEGIETLLNKEEVKIYCGADPTAD
                     SLHIGHLLPYLTLRRFQEAGHRPIVLVGGGTGMIGDPSGKSEERVLQTEAQVDKNVRG
                     IQQQMEQLFDFNVENGPILVNNYDWLSQISLIEFLRDYGKHVGVNYMLGKDSIQSRLE
                     NGISYTEFTYTILQAIDFGHLNRVHDCKLQIGGSDQWGNITSGIELMRRMYGVTDVYG
                     FTIPLVTKADGKKFGKSESGTIWLDPEKTSPYEFYQFWINTSDDDVIKFLKYFTFLSK
                     TDIEALEKSVVEEPHLRKAQTTLAEEVTRFIHGNDALAEAQRISQALFKGDLKSLSAE
                     EIKAGFKDVPQVTLSNETTNIVDALVETKISSSKRQAREDITNGAIYINGERQQDLAY
                     TLSSDDRYDDTFTIIRRGKKKYFMVNYQ"
     gene            complement(9420..10691)
                     /locus_tag="PTC08_001538"
     CDS             complement(9420..10691)
                     /locus_tag="PTC08_001538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease"
                     /protein_id="HDK5683043.1"
                     /translation="MRENDNEQQPKEQQGMHQNKQIDDGQRASSYRTSPPPRQPHFPW
                     LKVILVSLLAGILGALIVVGATGGFSNIFPWGNQNGSDVKVASDQKGGNSLDGKSHKY
                     KSVHEMINDQAPAIVGVINEQRAQNLGDLLQGKSAKAEPTGIGSGVVYEKNNGDAFIV
                     TNNHVIEGASSIKVHLHNSKQVDAKLVGTDPLTDIAVLKIKDRDDIKAITFGDSSKVK
                     TGDSVFAMGNPLGLEFANTVTSGIISASERTIEADTSAGANKVTVLQTDAAINPGNSG
                     GALVDIDGNLVGINSMKIAAPQVEGIGFAIPSNEVKLIIGELVKHGEVKRPSIGIGMI
                     NVADIPEQYKTNSGVDSGVYVAQVQRRGIDIEKGDIIVSIDGHKVENDTDLRSYLYKD
                     KKPGDHITLKVNRNGKTKDVDVTLTESNSSS"
BASE COUNT         3378 a         1882 c         2228 g         3270 t
ORIGIN      
        1 aggaggaacg attatgactg taaccattta tgatgtggcg agagaagcaa gagtatctat
       61 ggcgacggta tcacgtgtag tgaatggtaa tcaaaacgtg aaacccgaaa caagagataa
      121 agtgaatgaa gtaatcaaac gtttaaacta tcgtccaaat gctgtagcaa gagggttagc
      181 aagtaaaaaa acaacgacag taggtgtgat tataccggat atttctaaca tctactactc
      241 acaattagca cgaggattag aagatattgc gacgatgtat aaatatcata caattatttc
      301 taattcagat gatgaccctg agaaagaaaa agaaatcttt aacaatttat taagtaaaca
      361 agtggatggt atcattttcc ttggtggtac tctgacagat gagattaaag aacaaattag
      421 ccgtgcatct attccagttg tcgtatcagg aacaaatggt aaagacgacg gtattgcatc
      481 ggttaacatt gatttcgtgc aagcaagtaa agaagtgaca gcgcaattag ttaaaaccgg
      541 ttctaaaaag tttgctttcg ttggtggtgg ctattctaaa aaggctcaag aggatgtcta
      601 tgaaggcctt aaagaagtgt tagaacaaca tcagctcgcg gttgatgaac atttactata
      661 cgttggtaat gaaacgtata cagatgggtt acgtgcatat gaaaagttaa gtcattatca
      721 accagatgcc gtattatcta ttagtgacga acaagccatt ggtattgttc acggtgcgtt
      781 agatcatggg ttggaagtac cgaaagacat tcaagtggtg agcttcaaca acacacgttt
      841 agttgaaatg gtgagaccac aattatcaag tgttatccaa cctttatatg atatcggagc
      901 ggtaggtatg cgtctcttaa caaaatatat gaacaatgaa gatatcgaga atccaaatgt
      961 aattttgcca cataaaattc aataccgtgg cacaacacgt taatcatgaa ttaaacgaca
     1021 aatatgaaaa aaggctaaga taacatgatt atctcagcct tttttcatgg ttataaatag
     1081 tgcccccatg tcagtgatgt tgtttcaatg acttattccc tttaaaacca acttaatata
     1141 ttttcagcaa cttggttatt ttgttttgca atttctggac gtcgaggtat gtcttgataa
     1201 tcatcatact gttcttccca atattcaggg ataggaactg ggctataatg acgccatttg
     1261 ttcaaccagt cttcaggtaa gtgaccatgt agtcgaggtt ggtggattaa gctaaggtaa
     1321 atatggctcc atgctcttgg gacaacacgc caaatgttgt aacctccgcc acctaacatg
     1381 atttgcttgc caccacaata tttttcagca acttctgtaa tgatgtaagg aatttgataa
     1441 agtgtattta gatcacaact catatgggtt aaagggtcta agtaatgaat atctgaacca
     1501 ttcacactga caataaaatc aggttgaaat gattcagcga cttgattcaa tgtcttttta
     1561 aaaacttcta aaaatgagtc atgttctgta tacggttcga gtggaacatt gattgaataa
     1621 ccaaagcctt ggtctgtgcc tctctctgtg taatgaccag aacctggaaa taaaaattta
     1681 cctgtttcat gaatggaata gttcattact tggttggatg catagaacgt ccattgcacg
     1741 ccgtcaccgt gatgggcatc tgtatcgata taaagtacgc gctgttgata tttttcattt
     1801 aaatatttaa tataaatcgc tgcatcattg tagacacaaa agccactcgc gcgtccttca
     1861 tgtgcatggt gtaaaccgcc agctaaatga cagccattgc gaaacttgcc ttccataatg
     1921 gcatcaacta aatttaagcc accgccgata atggtcgcag tactccgatg aatgcgagaa
     1981 aagacatgtg tatcttcatc atctaagccg tatttttgtt gttcatcagg agtgagtaga
     2041 tttttttcac cacgcatcac tgcttgaatg taatcatatt tgtgaaccat cgcaatttca
     2101 tcaatagtgg cttgtcttgg cgtaataatt tgtgattcag ataaatatcc tgtcgatagc
     2161 aagagttctg tcgttagttt aacccgcatt tgattaaatg gatgtttatt atggaagcga
     2221 taacgcagta aggcatcaga ataaacatac cccgtttctt gttgtgaatg atttggcata
     2281 tcacatcccc ccttagaaaa agaaacgatt cataaaccta atatcatcaa aagcttccat
     2341 ttggtcgact gtgatgttct tgccaatacg tgccattaaa cagttagcag ggtgacttgt
     2401 aatttcaggg tcgtcagtcg caaatacttc taagccacca ttcgacatca tccgctgcat
     2461 taattttttg tattcaaaaa cgtctaattt tgagtttttc aaatcccaat gccaataata
     2521 ctctgtcgta atgataatat aatcttctaa ttcaggactc cgtgtgctta cttttaacaa
     2581 catgcgtccc aaacctaatc cacgatacgc taaactgatt tcaatcgcac cgagttctaa
     2641 caaataggga agttgacctt cagaccacct ctccataggg tccggatata aatacgtcac
     2701 gtaaccgatg atgtgatttt cttttcgaat gatataaatg cgcccctcat ctaacgtact
     2761 gatatcctgt atcgcctcaa attgctcgat aggaattcga aatgcgtcaa gaccctcgtc
     2821 aaaagaataa gtttgtaatt gtgttttaga aaccgggcct tcaatgataa aagtttgacc
     2881 atcaactgta tagctttcat gttcataggt tttaatatgt ttcatgggca catctccttt
     2941 cttacatatt gcactatcgt tattatatga caacgcttac ttaatttcac cttaaattct
     3001 gaataagtac aattttttga aaacaatacg cgtatagggt ataatgatat tagttttgaa
     3061 agcgattaca taatgcaagg gggttctttt gatgaaagtc gaagtttaca aaggggagca
     3121 aggcaacttc aatttaacta attatcaagc aacatatgat cagtttgatt ggaaagaggt
     3181 agagaaagta ttttcttgga acgaaactgg aaaaatcaac atggcatatg aatgtatcga
     3241 tcgtcatgtc aatgaaaaaa aagcagataa aattgcttta aattataaag ataatcgacg
     3301 aaaagaaagc tatacattta aagatttaca agaaaaatcg aaccaagctg ccaatgtgtt
     3361 gaaaaataag gcgaatgtac aaaaagggga tcgtgtcttc atttttatgc ctcgtacacc
     3421 agaactttat tttgcatttt ttggcatctt aaaattgggc ggtattgtag gtcctttatt
     3481 tgaagcattt atggaaaagg cagtgaaaga ccgtttggaa aatagtgatg cgaaagtcat
     3541 tattacgaca aatagtttat tatcgcgtat tccccaagag caactgccaa atttagaaac
     3601 gattgttatt gtcgatgatg aagttgatgt gaaatatgta gactttaata aagcattggc
     3661 aaccgcatcg acagcgttta atatagaatg gttagaccgt gaagatggct tgattttaca
     3721 ttatacatct ggttcaacag gtcagccaaa aggggtattg catgttcaag aagcaatgtt
     3781 gttgcattac atttcgggta aatacgtact cgattttcaa gaagatgacg tgtattggtg
     3841 tactgctgac ccaggttggg tgacaggcac atcttatggc attttctcac catggctgca
     3901 cggtgtaacg aactgtatcg ctggaggtcg tttttcacca gagaattggt acgcaatgat
     3961 tgaagacttt aaagtcacga tttggtatac tgcaccgaca gcgttacgta tgctcatgag
     4021 tgcaggtgat gacttagtcg aaaagtatga tttatcgtct gtacgtagca ttttatctgt
     4081 tggggagccc ctcaatccag aagtcatcaa atgggcgaaa aaggtctatg gtaaacgtgt
     4141 actagatacg tggtggatga ctgaaactgg gggacatatg attgtgaatt acttggcaga
     4201 agatattaag ctcggttcaa tgggtaaacc gctgcctggt attgaagcgg caattatcga
     4261 taatgaaggt aacgttttac caccgaatcg catgggtaac ttagcggtta aaaaaggttg
     4321 gccttctatg atgcgtcaag tttggaaaaa tcctgaaaag tatcaatcat actttattgg
     4381 tgattggtat gtatctggtg actctgctta ccaagatgaa gatggttatt tctggttcca
     4441 aggtcgagtc gatgatgtga ttatgactgc tggtgaacgt gtcggtccat ttgaagtaga
     4501 atctaaatta gtggaacatg aagcagtggc agaagcgggt gtcattggta aacctgatcc
     4561 agtgcgtggt gaaatcatta aagcattcgt cgcattacgt caagggtatg aaccttctga
     4621 tgacttaaaa gaagatattc gtaaatttgt taaagaaggg ttagctgctc atgctgcacc
     4681 gagagaaatt gaatttaaag ataaattacc gaaaacacgt tcaggtaaaa ttatgcgccg
     4741 tgtgttaaag gcatgggagc tcgatttacc gactggtgat ttaagtacaa tggaagatta
     4801 agacaaaaca actatgaaag ggcttggact attttgatgt ctaggccttt ttaaatttta
     4861 aaagagcaat caccaatcac gtaagaaggt gtcatcggta tacaacgtag ctttatatgt
     4921 tacacatgtc gttgtttaat aatgacgcaa atcgatcgtt tgaaagaagc gttaaattaa
     4981 aaagaagtct ccctgttttt gttcgacaat caccccattg ttcgttatga taaaaattga
     5041 aagaacttga tatactttat ttgtatgcgt ttacataacg ccatcatttc tcaaattgat
     5101 taaggggttg aataatgtga gtcatttatc agatttagaa attgcaaatc aatcaacatt
     5161 aagaccaatt aaggagattg ctgaaaaagc aggtatttcc gaagaagcgc tcgaacaata
     5221 tggacactac aaagcaaaaa ttgatatttc caaaattcaa actcaaaatg gaaaagggaa
     5281 agtcgttctt gtgacagcga tgagcccaac acctgctgga gaagggaaat caacagtgac
     5341 agtcggctta gctgatgcat tccaacacat caatcaaaac gtgatggtcg ctttacgtga
     5401 gccagcactt ggaccaacgt ttggtattaa aggtggcgct acgggcggtg gatacgcaca
     5461 agtgctccca atggaagata ttaacttgca ctttaatggt gatttccatg caattacaac
     5521 agcgaataat gcactctcag cttttataga taaccatatt catcaaggta acgaactcgg
     5581 tattgatcag cgtcgtattg agtggaaacg tgtgttagat atgaacgacc gtgctttgcg
     5641 tcaagtgatc gtcggtattg gtggtcctac acaaggggtc cctcgagaag atggtttcaa
     5701 tattactgta gcttcagaaa ttatggcgat tctttgttta agtacaggta tcaaagatct
     5761 taaagaaagt atttcgaaaa ttacgattgg ttatacacgt gaccgtcaac ctgtcactgt
     5821 taaagattta ggtgtagaag gcgcgttagc tatgatttta aaagatgcga ttaaaccgaa
     5881 ccttgtacaa accatcgaag ggacacctgc attgattcac ggtggacctt ttgcgaacat
     5941 tgcgcacggc tgtaactcaa ttatcgcaac agaaacagca cgtgatttgg cagatatcgt
     6001 cgtgacagag gctggttttg gttctgattt aggggctgaa aaattcttga atattaaatc
     6061 acgtaaagcc aattttgaac cagatgcagt cgtgattgtt gcaacgattc gtgcgcttaa
     6121 aatgcatggg ggcgtcgcta aagatcagct aaaagaagaa aatgtcgttg cacttaaagc
     6181 agggattaaa aacttagaac gtcacgttga aaatattcgc aaattcggtg ttgaacctgt
     6241 tgttgcactc aatgcattta ttcatgatac ggatgctgaa tttgaattcg tacaacaatg
     6301 ggcaaaagag aatggtgtac gtttatcgtt aacagaagta tgggaaaaag gtggtaaggg
     6361 ggggacggat ttagcagaaa aagtgcttga agtcatccgc gaaccgaaac aattcaaacg
     6421 cctatatgaa ctcgaaatgc cgcttgaaga aaaaatcgaa aaaattgtta aagagattta
     6481 cggtggttct aaagttacgt ttacatcaaa agcacaaaaa caattggcgc agtttaaagc
     6541 gaacggttgg gatcattatc cagtatgtat ggcaaaaacg caatattcat tctcggatga
     6601 tcaaacacaa ctcggtgcac catctgattt tgaaattacg attcgtgaac tcgaagctaa
     6661 aacaggtgcg ggctttatcg ttgcgttaac aggtgccatt atgacaatgc caggattacc
     6721 gaaaaaacca gcagcactaa aaatggacgt aacagaagac ggccatgcga taggattatt
     6781 ctaattctta acgtgaatga agtgaatgtc aaacgaaagg tctaggttat atttcaacct
     6841 agaccttttc tttaatggtt attcatcata caaatgtgta taaatatcgt aatggactgc
     6901 tttgtcatat gcatctttag aaatcatctg ttctactaac atccgcttca aaacgtaatg
     6961 ttgacgatgg attgaagaaa tgacgtcatc ttcatgttta agtgaaccgt catgattgaa
     7021 tggtgtatag gcgtagggac tttgcaataa tcctatcaaa taagccgatt cagctaagtt
     7081 caatgtttta ggaggtttgc cgaataaacc gtatgacgct gaagtgattc ctgtcacatt
     7141 ttggccgttc gtgtcgagtc caaaaggcac aagattcaaa tacgtataaa tgatttcatc
     7201 tttcgttaaa atgtgttcaa ttctcatcgc atacataatc tcttttgctt tacgatcata
     7261 tgtccgttct tttgtgagga cttggttttt aatcagttgt tgtgtaatcg tactgccacc
     7321 tgttgggaat tgggtatcaa aaatatcttg gaacatcgct cttaatatcg cttttggtaa
     7381 tacaccatga tgcacataaa aatcagcgtc ttctgaagca actaatgctt ttgtcacata
     7441 gggcgagact tctgcaggtc ctgcgattaa gctcggttct tgttcgttat agagtgcaat
     7501 gtaatctgtg ttgtcaggtt ggtcgttatc aagttctggg aggcgtgtga cttgttggac
     7561 taggtcatga tcattcagtg attttgaatc tgacacaata cttgcaaaat agccgagtaa
     7621 taagccgcac acaaaaatta aaccgatgag catgaaaaga acgaacgaga tgatgaattg
     7681 tttcgttttt cgcatgtaaa agtcatagcg agcgaatgaa gtatgcgttg ttaaatcacg
     7741 ttgttctttt gtcttcatca gtcacaagcc tccttttatt tttatcaaca gtatatcata
     7801 tttaaaaatg tgagtagaaa tagattgaca tttgatgatt gactttaaaa ttataaatct
     7861 atataatgaa tagcaatcac attaagcatt gaaatcgagg acaagtaata aatttgtaga
     7921 ttttaagaga gtcagtggtc gctgtgaact gataatcgca tatttatgaa tacacctcag
     7981 ctacagattt caacgttagc aatgaacgta tcattgtaag agttccaagt atggtggtac
     8041 cgtgcaaatt gcgcccttac gtcgatgtaa gtggtgtttt tttattttta aggaggttat
     8101 tttatggcaa atgcattgtt agaagaatta agttggagag gtctcgttta tcaacaaaca
     8161 gatgaagagg gcatagaaac acttttaaat aaagaagaag tgaaaattta ttgtggcgca
     8221 gatccaactg ctgatagttt gcatatcggg catttattac cttatttaac attgcgtcgt
     8281 tttcaagaag ctggtcatcg tccgattgtg ttagtgggtg gcggtacagg tatgattggt
     8341 gatccgtctg gtaaatctga agagcgtgta ctccaaacag aagcgcaagt tgataaaaac
     8401 gttcgcggca ttcaacagca aatggagcaa ctgtttgatt tcaatgttga aaatggtccg
     8461 attttagtta acaactatga ttggttgagc caaatttcat taatcgaatt tttacgtgat
     8521 tacggtaaac atgtcggtgt aaattacatg ctcggtaaag attcaattca atcacgtctt
     8581 gaaaatggta tttcatacac tgaatttacg tataccattt tgcaagcgat cgactttggt
     8641 catttgaatc gcgtacatga ctgtaaactt caaattggtg gatcagatca atggggtaac
     8701 attacgagtg gtatcgaatt aatgcgtcgt atgtacggtg tgacggatgt ttatgggttt
     8761 acgattccat tagtgacaaa agctgacggt aaaaagttcg ggaaatctga atctggtacg
     8821 atttggttag accctgaaaa aacaagccca tacgaatttt atcaattttg gattaatact
     8881 agtgacgatg atgtgatcaa gttcttaaaa tactttacat ttttatctaa aacagacatt
     8941 gaagctttag aaaaatctgt tgtagaagaa ccccatttaa gaaaagcaca aacgacactt
     9001 gctgaagagg tgacacgttt cattcacggt aacgacgcgc tagccgaagc acaacgtatt
     9061 tcacaagcct tattcaaagg tgacttgaaa tcattatcag cggaagagat taaagcaggt
     9121 ttcaaagacg tccctcaagt gacattatcc aatgagacga caaatatagt ggacgcgtta
     9181 gtggaaacaa aaatttcttc ttcaaaacgt caagcgcgtg aagatattac gaacggtgcg
     9241 atttatatta atggtgaacg tcaacaagac ttagcgtata cattatcaag cgatgaccgt
     9301 tatgatgata catttacgat tattcgtcgt gggaagaaaa aatattttat ggtgaattat
     9361 caataataga taagataaag gctgggaagc tttcaattgc gtcccagcct ttataccttt
     9421 tatgaagatg aatttgattc tgttaatgta acatcaacat cttttgtttt accattgcgg
     9481 ttgactttga gtgtaatatg atcaccaggt tttttatctt tgtagagata agatcttaaa
     9541 tctgtatcat tttcgacttt atggccgtct atggaaacga tgatgtcgcc tttttcaata
     9601 tcaatgccac gtctttgtac ttgagcaaca tacacaccag aatctacgcc actatttgtt
     9661 ttatattgtt ctggaatatc cgcaacatta atcatgccga taccgataga aggacgtttg
     9721 acttcaccgt gtttcacgag ttcaccaata atcaatttca cttcattact tggaatcgca
     9781 aacccaatac cttcaacttg tggtgctgca attttcattg agttaatacc gacaaggtta
     9841 ccatcaatat caactaatgc accgcctgag ttaccagggt taatcgctgc atctgtttga
     9901 agcactgtca ctttgtttgc acctgcagac gtatccgctt caattgttcg ttcacttgca
     9961 gaaataatac ctgaagtcac ggtattcgca aattcgagtc caagtggatt acccatcgcg
    10021 aaaacagaat cgcctgtttt aacttttgat gaatcgccaa atgtgattgc tttaatatcg
    10081 tctctgtctt taattttaag tactgcaata tctgtcaatg ggtctgtacc gacaagtttc
    10141 gcatcgactt gtttagaatt gtgtaaatga actttaattg aagaagcacc ttcaataaca
    10201 tggttgtttg taactataaa ggcatcgcca ttattttttt cataaacgac acccgaaccg
    10261 atacctgtgg gttcagcttt agcagatttg ccttgtaata aatcacctaa attttgggcg
    10321 cgttgttcgt tgatgacacc tacaatggcg ggtgcttggt cattgatcat ctcgtgcact
    10381 gatttgtatt tatgactttt gccatcaagc gaattaccac ctttttgatc gcttgctact
    10441 ttgacatccg agccattttg attgccccaa ggaaagatgt ttgaaaagcc gcccgtagcc
    10501 ccgactacaa tgagcgcacc taaaatacca gcaagtagtg aaacgagaat cactttaagc
    10561 catgggaaat gaggttgcct tggagggggt gacgtacgat aagatgaagc acgttgacca
    10621 tcatctatct gtttgttttg atgcattcct tgttgttctt taggttgttg ttcattatcg
    10681 ttttctcgca taaaattcct cctttaatca tattatgata aatttttcaa cgatttacca
    10741 gtaggatact atccaact
//
LOCUS       DANHOL010000083        10737 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.083, whole genome shotgun sequence.
ACCESSION   DANHOL010000083 DANHOL010000000
VERSION     DANHOL010000083.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 10737)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10737)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10737
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.083"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            20..163
                     /locus_tag="PTC08_001539"
     CDS             20..163
                     /locus_tag="PTC08_001539"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683044.1"
                     /translation="MNQVKERLSQFLEEIEHADPNKVDVADIDEWLQLLDQLEAKVNQ
                     LRQ"
     gene            239..754
                     /locus_tag="PTC08_001540"
     CDS             239..754
                     /locus_tag="PTC08_001540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 glutamine amidotransferase"
                     /protein_id="HDK5683045.1"
                     /translation="MMAKVAVLLADEFEDVEFTSPKEALEEAGHETVVIGTTANDEVV
                     GKHGTKVTVDLSIADAKPEDYDGLLLPGGFSPDILRGDAEQRFGTFAKYFLKEDLPSF
                     AICHGPQILIDTDELKGRTLTAVLNVRKDLSNAGANVVDESVVVDKKLVTSRTPDDLD
                     DFNREIVNQFK"
     gene            complement(1331..3076)
                     /locus_tag="PTC08_001541"
     CDS             complement(1331..3076)
                     /locus_tag="PTC08_001541"
                     /EC_number="1.2.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate oxidase"
                     /protein_id="HDK5683046.1"
                     /translation="MGKVKANMALVSALKAWDIDHVYGIPGDSIDAVVDGLKVAENDI
                     DFIHVRHEEVASLAAAAYTKLTGKIAVSLAIGGPGAIHLLNGMYDAKMDNVPQLVLSG
                     QADSHKLGTKAFQEVDLPKLFEDVAVYNYQLKESDATRIFEIVDEAIRTAYREKGVAV
                     LTLPNNILNTKVEDNFPTEVEPYVPERRQPLSHEIQRAAQLFNESKRPVILVGKGTDH
                     AKAEVREFIEKGKIPTIVTLPSKTIVGDDHPYNLGNLGKIGSKPSYQAMQNADLLILA
                     GTNYPYVDYLPKKNIPAIQIDENPEAIGHRFDVDAPIVGDSQLALRALTDAIQPVEKR
                     SFLNEMLDHRETWKGWMTEDKNNDASPIRPERLMDAINKVMTDDTVIAADVGTSTVWS
                     TRYLNLGVNNHFIISSWLGTMGCALPTAIASRIAFPGRQVIGITGDGAFEMVMQDFST
                     AVQYNLPMVLFVLNNSELSFIKYEQQEAGELEYGIDFSDIDFAKFAEACGGVGYTLKD
                     PKDIDSIVQTAVQQHKPTIVNVYVDKNAAPLPGKIVPEQAINYAKWAYRSLTEDRKFI
                     FNEMPSLTTAVRRFL"
     gene            3277..4074
                     /gene="sgtB"
                     /locus_tag="PTC08_001542"
     CDS             3277..4074
                     /gene="sgtB"
                     /locus_tag="PTC08_001542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="monofunctional peptidoglycan glycosyltransferase
                     SgtB"
                     /protein_id="HDK5683047.1"
                     /translation="MKRRGRIAKPAPHNEPHHNTYYQPVGQPPKKQKPRRIFRTLLML
                     IVLAGALFIGAMYFMAQRADIDELKSIEQKSSYVSASQMLDYTKGAFIAVEDRRFYKH
                     SGVDYRGSLRAIFASVRDRDRLQGGSTITQQLAKNYYYDNQQTVTRKLKEMFVAKRIE
                     RYYDKDEILSYYMNNIYYGDNHYTIESAANDYFGVTTNEQNYTLPHITVLQSAILASK
                     VNAPSVYNVNDMSPSFINRTKMTLEKMKQQEFINEQQYTEALQQLGA"
     gene            4259..5062
                     /gene="recX"
                     /locus_tag="PTC08_001543"
     CDS             4259..5062
                     /gene="recX"
                     /locus_tag="PTC08_001543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002477604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination regulator RecX"
                     /protein_id="HDK5683048.1"
                     /translation="MSKITKIEVQKNNHERFNIYIDNEFAIGISIDTLVAFNIKKGDE
                     LDIDELKSLAQREYQQQANNHAIQYLSYRKRTRKEIATQLRKEGYEEDIIHEAIAYCE
                     RLKLIDHRDYMISLKNTMLRTTDKGPEVFRQKLHQAGIEADLIEEGVRVYEEEQPFES
                     IVDIGQKIMNQKKGPPSKVKVKVQQSLQQKGFTLDTIFKVMDALDFKQDPETVDNLLQ
                     RDLEKVYNKYQKKYEGKPLYMKTVEALLRKGYPYDDIQRKLTESGIDHD"
     gene            5055..5369
                     /locus_tag="PTC08_001544"
     CDS             5055..5369
                     /locus_tag="PTC08_001544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002509976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfhH family protein"
                     /protein_id="HDK5683049.1"
                     /translation="MIEKRLSDMDRQEILHVIQTSKEKMRKAEMNGIMNEYDVYANKV
                     VIAESYLIDTNEIELGKIYRLKDGTGNYFKVERLKGVFAWGYRINGAEAEEGLPISLL
                     QI"
     gene            5385..6914
                     /locus_tag="PTC08_001545"
     CDS             5385..6914
                     /locus_tag="PTC08_001545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002501580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDK5683050.1"
                     /translation="MGSSIVLKMINVTHYYRNQKKQNVLKPFSYQPEDIELNNISLHI
                     YEGEALGIIGEAESSKSLIGEILAGTVEPDKGRIARAASMFYANMNQKSVENILVMDY
                     VKDVIQLFPYDAPEHKATQVIKYAHLEAVQDERVKDLTDAQYAQLLFSLARASEAKIV
                     ILSHILSDLDEGFFEKAKIMVEDYIDREWTWIAIDNDVEKVKAVSNYLAWISHGQVRK
                     EGSIKQVLPYFLSHQRDMASLTTVEEREHFDEDWKRNRSRMPELTYNFRRIERYRHAQ
                     PPAFLSRIWTWLALFFLGMCMAGVLIFTNLGKIASAPLVTQATISKSTSDPYVDKLAY
                     GIVNDSEMTITPLDNKGKEEQLPHYTVASITGENKTAYRIEVDGKSYKANKDKFLYLN
                     PAALYKEVDRKQLEPYMKDNYINFVDYFNSALHKSHKKVNETLVPEHEQRFVEPIVEQ
                     PISMLFDDRDHLLGFTFPIVKQDKFKDEFNIKTDIWMSKTDSGYFIADLKHSKWIYIE
                     L"
     gene            6924..7721
                     /locus_tag="PTC08_001546"
     CDS             6924..7721
                     /locus_tag="PTC08_001546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="teichoic acid translocation permease"
                     /protein_id="HDK5683051.1"
                     /translation="MLENLIHFFHNRTRLFRHSKYRLQKHRKWTALTFLIAFGLMVLT
                     AIAFYFLDIVEVTQATFDYRLTGLVAFGVIWVAIYIHYRFFPRDYYVTRHFNMSPFFH
                     IVLSSGMHTIILTVLMTVMAWLKPLNTDTTWVGVFFYSAMSFVFIVIMSFLLGLVYVL
                     YPKLDRVFTLIVILTFLLVPILYIPPNSNGWVTHVMMLNPMYYLVNGMQQAVIVGHEA
                     MNHLGYHFYFMCFIGLMIVFCYALKDYVSQLRPNEHHQSKVQKEKAE"
     gene            complement(8191..9168)
                     /locus_tag="PTC08_001547"
     CDS             complement(8191..9168)
                     /locus_tag="PTC08_001547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HDK5683052.1"
                     /translation="MDTATHIAIGVGLTAIATTDAAMSGNFAATATVLIAGSLIPDSD
                     TVLKLKDNATYISNHRGITHSIPFTLLWPLLLTLLVYSLFKHVDPLHVWLWAQLAVFL
                     HVFVDIFNSYGTQALRPFSNKWIQLSVINTFDPIIFAILLVGIAIWAIGVHPYIVFIP
                     VLIVLIVYYILRFQMRSWLKKQALNQVEHLGTPIKVFVAPTLRFMQWRIAIQTEKHDY
                     VGRSYGRNIVFSDKVERQPFPSNAIMKYAQYDKNVKAFLNFSSIYRWHVRQVDSYTTE
                     LRFIDLRYLKDGHYQFVAILHLDQEMKVKHSYTGWVFSEEKLLRKLLTH"
     gene            9259..10305
                     /gene="mutY"
                     /locus_tag="PTC08_001548"
     CDS             9259..10305
                     /gene="mutY"
                     /locus_tag="PTC08_001548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="A/G-specific adenine glycosylase"
                     /protein_id="HDK5683053.1"
                     /translation="MLDELTFKPHLLEWFEKEQRQMPWRETKNPYYIWISEVMLQQTQ
                     VDTVRDYYHRFVEAFPTIEDLANADEDDVLKLWEGLGYYSRARNFHIAAKEVVAFHDG
                     SVPQHPETFLNLKGVGPYTQAAVMSIAFDLPLATVDGNVFRVWSRLNDDTRDTALQST
                     RKAYENELAPYVAQQSGDFNQAMMELGALVCTPKAPLCLFCPVQMHCESYEQGAVLER
                     PVKTKKLKKKTLNFDVYVIQNQSGDFLIEQRTASLLKGMWQFPMIEHGAKEDIEPTLD
                     INHLTIQRKNVVKVKHQFTHLTWHLTVHTATVDETVAPVVANGRRWMASVEKDNYSFP
                     VPMTKIFNAINEAE"
     gene            10371..>10737
                     /locus_tag="PTC08_001549"
     CDS             10371..>10737
                     /locus_tag="PTC08_001549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF402 domain-containing protein"
                     /protein_id="HDK5683054.1"
                     /translation="MVKSCIPREGESIKIQSYKHDGNIHRVWSETTILKGTADVVIGG
                     NDHTLVTESDGRTWVTREPAIVYFHSEYWFNVICMFREDGVYYYCNLSSPFVCDEEAL
                     KYIDYDLDIKVYPNGKYHLL"
BASE COUNT         3516 a         1843 c         2149 g         3229 t
ORIGIN      
        1 tatggaagag ccacaaacta tgaatcaagt gaaagagaga ctttctcaat ttttagaaga
       61 gattgaacat gcggatccaa acaaggtgga tgttgcggat atcgacgaat ggcttcaatt
      121 gttagaccaa cttgaagcga aagtgaatca attacgtcaa tgaatatggg tcaatatgtt
      181 tgaacgattt actttggggt atacattgaa atagatattt aaaagaaagg tgatgcaaat
      241 tatggcaaaa gtagctgtat tattagcaga cgaatttgaa gatgttgaat tcacaagccc
      301 caaagaagca cttgaagaag cgggccatga aacggtagtc attggtacaa ctgccaatga
      361 tgaagttgta ggtaaacacg ggactaaagt gactgtggat ttatctattg ctgatgcaaa
      421 accagaagat tatgatggtt tattattacc aggtggattc tcaccagaca tattacgtgg
      481 agatgcagaa caaagatttg gtactttcgc gaaatatttc ttaaaagaag atttaccatc
      541 attcgccatt tgccacggac cccaaatttt aattgacaca gatgagttaa aaggtcgtac
      601 tttaacggct gtgcttaatg tacgtaaaga cttatctaac gcaggtgcaa acgttgttga
      661 cgaatctgtt gttgttgata aaaaattagt aacaagtcgt acacctgatg acttagatga
      721 ctttaataga gaaattgtaa atcaatttaa ataatatgtg attgattgag agcgagcgct
      781 agaatttcta gtgttcgctt ttttgatatg tcctgttttt gatacatact catatattta
      841 aagggttttc tagtttgcag aactaacctt cgctttctta gggggggctc aactcaattc
      901 agcttaagtg tagtgtacat ttaaatgaag ctgaattgga ttttcggctg ggtctgattc
      961 atcaacagtc tcgggaagtt cttgtaatct aacagtttat ggcaaaaaat gaattgtgtt
     1021 gtaatagaaa gcgaacgtct ttagcactcg cagttcttaa tttctatgat tacaatttca
     1081 agtgaaactt cgaatgtgag aatggtcgta atacgaaggg aaagtatatt aagtgtttac
     1141 acttctcatt tattttaatt gatggaaatc actttgcatt gccgattttt atatttggat
     1201 tgagtcgtct gaatatgaaa tttttacaat ttacattgcc tcaaaatgtc ttaaacttac
     1261 atttgaacgt aacagttgaa aacggtaaaa aaacagcaca ggtgatttca cctatgctgc
     1321 ttgaatgtgc ttataagaaa cgtcttactg ctgttgttaa tgatggcatt tcgttaaaaa
     1381 taaatttgcg gtcttctgtt aagctacggt atgcccattt tgcataattt atcgcttgtt
     1441 caggcacgat tttacctgga agtggtgcag catttttatc tacatacaca ttaacgattg
     1501 ttggtttgtg ttgttgtact gctgtttgta cgattgaatc aatgtctttc ggatctttta
     1561 atgtgtaacc gacaccacca caagcttctg caaatttcgc gaagtcaata tcactaaagt
     1621 cgataccgta ctctaattca cccgcttctt gttgttcata tttaataaat gaaagttcac
     1681 tgttattaag gacgaacaac accattggta aattgtattg caccgctgtt gagaagtctt
     1741 gcatcaccat ttcgaacgca ccgtcacctg taatcccaat cacttggcgg ccagggaaag
     1801 caatgcgtga tgcgatagct gttggaaggg cacaacccat tgtaccgagc caacttgaaa
     1861 taatgaagtg gttgttcaca cctaagttca agtaccgtgt tgaccataca gttgatgtgc
     1921 ccacgtcagc tgcaatgacc gtatcatcag tcataacttt attaatcgca tccatcaatc
     1981 gttcaggacg gattggtgaa gcatcattat ttttatcttc agtcatccaa cctttccaag
     2041 tttcacgatg gtctaacatt tcatttaaga atgatcgttt ttcgacaggt tgaattgcgt
     2101 ctgtcaatgc gcgtaatgcc aattgactgt ccccaacgat aggtgcatcg acatcaaagc
     2161 ggtgaccgat agcttctgga ttttcatcga tttgtatcgc tggtatgttt ttcttcggta
     2221 aataatccac atacggatag ttcgtgcctg ctaaaatgag caagtccgca ttttgcatgg
     2281 cttggtaaga aggttttgaa ccaattttac cgaggttacc aagattgtat ggatggtcat
     2341 cgcctacaat cgtttttgat ggcaacgtca cgatagttgg aattttacct ttttcaatga
     2401 attcacgtac ttctgctttc gcatggtctg tccctttacc gactaaaatg acagggcgct
     2461 tactttcatt gaataactgt gcagcgcgtt gaatttcgtg gcttaaaggt tgacgacgtt
     2521 ctggtacgta aggttcaact tctgtaggaa aattgtcctc aacttttgta tttaaaatgt
     2581 tgtttggtaa ggtcaacact gcaacacctt tttcacgata tgcggtacga atcgcttcgt
     2641 caacaatttc gaaaatacgt gtcgcatcac tctctttcaa ttgatagttg taaactgcaa
     2701 catcttcaaa taattttggt aagtccactt cttggaatgc ttttgtgcct agtttatgac
     2761 tgtctgcttg tcctgataat acaagttgtg gcacattgtc cattttcgca tcgtacatcc
     2821 cgtttaataa atggatggca ccaggtccac cgattgcaag tgaaactgca attttgccag
     2881 ttaatttagt ataagcggct gctgcaagac ttgcgacttc ttcatgtcgt acgtgaataa
     2941 agtcaatgtc gttttcagct acttttaatc catcgacaac agcatcgata gagtcacctg
     3001 gtatcccata gacatggtca atatcccatg cttttaatgc gcttactaac gccatatttg
     3061 cttttacttt tcccataata atgattactc cttctgtttt gattctcttt atgacagtta
     3121 catacccatt ttttcacgtt cagtaacaat cttcaatgtt cgtgctcaag ctcgttctac
     3181 agactgattt ttgccgaaac atatagcata attttgaagg acttggtaaa ctcacattat
     3241 taagtgattt aatatgagaa agtaggtcac acatatatga aaagaagagg ccgaatagcc
     3301 aagcctgcac cgcacaatga accacatcac aatacgtatt atcaacctgt cggacaaccg
     3361 ccgaagaaac aaaagccacg ccgtattttt cgcacgttat tgatgttaat tgtattagca
     3421 ggtgcattat ttattggtgc gatgtatttt atggcacagc gcgcggacat agatgaatta
     3481 aaaagtattg aacaaaaaag tagttatgtc agtgcttcac aaatgctaga ttatacaaaa
     3541 ggggcattta tcgctgtaga agatcgtcgt ttttacaaac attcaggtgt agattatcga
     3601 ggaagtttac gtgcgatttt tgcatcggtg cgtgaccgtg atcgtttaca aggtgggagt
     3661 acgattacac agcagcttgc aaaaaattat tattatgata accaacagac cgtgacgcgt
     3721 aagttgaaag aaatgtttgt cgctaaacgg attgagcggt attacgacaa agatgaaatt
     3781 ttaagctact atatgaataa tatttattat ggcgacaatc attatacaat tgaatctgct
     3841 gcgaatgatt attttggtgt cacaacaaat gaacaaaatt acacattacc gcatattaca
     3901 gtattacaaa gtgccatatt agcaagtaag gtgaatgcgc cttccgtgta caatgtgaat
     3961 gacatgtcac cttcatttat taatcgtacg aaaatgacgt tagaaaaaat gaaacaacaa
     4021 gaatttatca atgaacaaca atatacagaa gcgttgcaac aacttggtgc ttaatgtatg
     4081 aatatggcat aataaggaca tgaagtgttg aggaaaacga gacaatttgc gatttctatc
     4141 actgcacaaa ctttaatgcc ggtcacgacg ctgtcaacag agtggggtag agcattggaa
     4201 tctaattata tttttagatt tgagctctac tctttttctt atttaaaggg gtgaaacgat
     4261 gtcaaaaatt actaaaattg aagtgcaaaa aaataatcat gaacgtttta acatttatat
     4321 tgataatgaa tttgcgatcg gcatttcaat agatacgttg gtggcgttta atattaaaaa
     4381 gggcgatgaa ctggacatag atgaacttaa atcattggcc caacgtgaat atcaacagca
     4441 agcgaacaat catgccattc aatatttgtc ctatcgcaaa agaacacgta aagaaatcgc
     4501 cacacagcta agaaaagaag gttatgaaga agacatcatt cacgaagcca ttgcttattg
     4561 tgagcgactt aaactcattg atcaccgcga ttatatgatc agtttaaaaa acacgatgct
     4621 acgaacaacg gataaaggac cggaagtatt tcgtcaaaag ctacatcaag caggaattga
     4681 agcggatttg atagaagaag gcgtccgtgt atacgaagag gaacaaccat tcgaaagcat
     4741 agtagacatt ggtcaaaaaa taatgaatca aaaaaaagga cctccctcaa aagtaaaggt
     4801 gaaagtacaa caatccctac aacaaaaagg attcacccta gacacgatat ttaaagtgat
     4861 ggatgcatta gattttaaac aggacccaga aactgtggat aatttattgc aacgtgattt
     4921 agagaaagtc tataataaat atcagaagaa atatgaagga aagcctttat atatgaaaac
     4981 ggttgaggca ttactaagaa aagggtatcc gtatgacgat atccaacgaa aactgacaga
     5041 aagtggtatt gatcatgatt gaaaaacgat taagcgacat ggatagacaa gaaattttac
     5101 atgttatcca gacgagtaaa gagaaaatgc gaaaagctga aatgaacggc attatgaatg
     5161 aatatgatgt ttatgcgaat aaagtagtta ttgcagagag ttatttaatc gacacgaatg
     5221 aaattgaact tggtaaaatt tatcgcctta aagatggcac aggcaattat tttaaagtcg
     5281 aacgtctcaa aggggtattc gcatggggct atcgcattaa tggggcggaa gctgaagaag
     5341 gtttaccaat ttcattatta caaatataga agggacttta gcgcatgggt agttcaattg
     5401 tcttgaagat gattaatgtc acacattatt atcgtaatca aaaaaagcaa aatgtgctta
     5461 aaccttttag ttatcaacca gaagatattg agttgaacaa catttctctg catatttatg
     5521 aaggtgaagc gctagggatt attggtgagg ctgaatcatc taaatcatta atcggtgaaa
     5581 ttttagctgg gactgtcgaa cccgataaag gaagaatcgc acgtgctgca tcaatgtttt
     5641 atgcgaatat gaatcaaaaa tcagttgaaa atattctagt gatggactat gtaaaagatg
     5701 tcattcaact gtttccttac gatgcacctg aacataaagc tacacaagtc attaagtatg
     5761 cacatttaga agctgtacaa gatgaacggg tcaaagactt aacagatgca caatatgcgc
     5821 agttgttatt cagcttagca cgcgcatcag aagcaaaaat tgtcattcta agtcatatat
     5881 tgagtgattt agatgaagga ttttttgaaa aagcaaaaat aatggtagaa gattatatcg
     5941 accgcgaatg gacttggatt gcgattgaca atgatgtcga aaaagtgaaa gctgtgagta
     6001 actatttagc atggatttca cacggtcaag tacgtaaaga aggctcgatt aaacaagtat
     6061 tgccttattt tctgtcgcat caacgggata tggcatcgtt aacgacagtg gaagaacgag
     6121 aacactttga tgaagactgg aagcgcaatc gttcacgcat gccagaactt acatataatt
     6181 ttagacggat tgaacgttat cgtcatgcgc aaccaccagc ctttttatcg cgaatatgga
     6241 cttggttggc actgtttttt cttggtatgt gcatggcagg tgtattaatt tttactaact
     6301 taggcaaaat tgcaagcgca ccattagtga cccaagcgac catttcgaaa tcgacatctg
     6361 atccatatgt ggacaaatta gcttatggca ttgtaaacga cagtgaaatg acgatcacgc
     6421 cattagacaa taagggtaaa gaagaacagt taccgcacta tacagtcgca tcgattacgg
     6481 gtgagaataa aacagcgtac cgtattgaag tggatggcaa aagttataaa gcaaacaaag
     6541 acaaattcct ttatttaaat ccagcagcac tttataaaga agtcgatcgt aaacagttag
     6601 aaccttatat gaaagacaac tatattaact ttgtcgatta ctttaacagt gcactccata
     6661 aatcacataa aaaggtgaat gaaacacttg tgccagaaca tgaacaacga tttgtagagc
     6721 cgattgtcga acagccgatt tcaatgttgt ttgatgaccg cgatcattta ctcggcttta
     6781 catttccaat cgtgaagcaa gacaaattta aagatgaatt taatattaaa accgatattt
     6841 ggatgagcaa aacagattca ggttatttca ttgccgatct taaacattcc aaatggattt
     6901 atatcgaatt gtaggtgatg agcgtgttag aaaacttaat tcattttttt cataatcgaa
     6961 cgagattgtt tagacacagt aaatatcgcc ttcaaaaaca tcgcaaatgg acagcattaa
     7021 cttttttaat tgcatttggt ttaatggttt taaccgcaat agctttttat tttttagata
     7081 tcgtggaagt gacacaagcg acttttgatt atcgactgac agggctagtc gcttttggtg
     7141 tcatatgggt tgcgatttat atccattacc gcttctttcc tagagattat tatgtgacgc
     7201 gtcactttaa tatgagtcca tttttccata ttgttttgtc gagcggcatg cataccataa
     7261 tattaactgt tttaatgact gtcatggctt ggttaaaacc attgaatact gatacgacgt
     7321 gggtaggcgt attcttttat agtgcgatgt cgtttgtttt tattgtcatc atgtcatttt
     7381 tacttggttt agtgtatgtg ctctatccaa agttagaccg tgtctttaca ttgattgtga
     7441 ttttgacgtt tttactcgtg cctatccttt atattccacc taatagtaac ggctgggtga
     7501 cacatgtgat gatgctgaac ccgatgtatt atctagtcaa tggcatgcaa caagctgtca
     7561 tcgttggcca tgaagccatg aatcatctcg gttatcattt ttatttcatg tgtttcattg
     7621 gattgatgat tgtattttgt tatgcattaa aagattatgt ctcacaatta agaccaaacg
     7681 aacaccatca atcaaaagta caaaaagaaa aagccgaata aaccaaaagc tgtgaaacaa
     7741 cgacatctca tcgttgcaca cagctttttg tttgatggtt ttgaagcggt aagggctagg
     7801 aaacacgttt taacgctaag gtgaaggaga tatgaagcac catgaataca agtgattaat
     7861 taatgataat tagtgcattt attcagttta agaaacatat cagataacag aacgacgctg
     7921 cgataaaaca ataaaaagcc tttaagggga gcaaagctag gcgagactcc tgaggtatca
     7981 gctgaaacaa ataatccact atcgctttca tgaatgtaac agtaaaatta aaaacgtttg
     8041 ttagttgaag tttcagcgcc taggaagacg agtctaaagc gtgcaaccca taaaggctaa
     8101 ataattttaa aaactgcagc atcgtgttgc aatctaaggt ttgattggag taaaaccagt
     8161 taaatcgtta tagtatatca tcacgctgaa ttaatgagtg agtaattttc tcaataactt
     8221 ctcctcacta aacacccacc ctgtatacga atgcttcacc ttcatctctt gatcaagatg
     8281 caaaatcgcc acaaactgat aatgcccatc cttcaaataa cgcaaatcaa taaatcgcag
     8341 ctcagtcgta taagaatcaa cttgtctcac atgccaacga taaatggaag aaaagttcag
     8401 aaaagctttc acatttttat catattgtgc atatttcatg attgcattac ttggaaaagg
     8461 ctgacgttct accttgtcac taaacacaat attacgtcca taactgcgac cgacataatc
     8521 gtgtttttca gtttggattg cgatacgcca ttgcataaaa cgaagggtcg gtgctacaaa
     8581 aactttaatt ggtgtgccga gatgttccac ttgatttaaa gcttgttttt ttaaccaact
     8641 gcgcatttga aatcttaaaa tataatatac aatgaggaca attaacactg gaataaacac
     8701 aatataaggg tgtacaccga tggcccaaat ggcgataccg acgagcaaaa tcgcaaaaat
     8761 aatcggatca aatgtattaa tgacactcaa ttgaatccat ttattcgaaa agggccgtaa
     8821 tgcttgagta ccatatgagt tgaaaatatc aacaaacaca tggagaaaga cggcgagttg
     8881 tgcccataac caaacatgta agggatcgac atgtttgaaa aggctataga ccagtaaagt
     8941 taacaataat ggccaaagta aagtaaaagg aatagaatgt gtaatgcctc tatgatttga
     9001 aatatatgtt gcattatctt ttaattttag tacagtatca ctatcaggaa ttaaagaacc
     9061 tgcaatcagt acggttgctg ttgcagcgaa gtttccgctc atagcagcat ccgtcgttgc
     9121 gattgctgta agtccaacgc ctatcgcgat gtgtgtggct gtatccataa tgtctcactc
     9181 ttttcaatat aacgtaactt tattatagtc gattattgaa atgaacaaaa atcattaata
     9241 tatgcaagga gaattgaaat gttagatgaa cttacattca agccacattt attggaatgg
     9301 tttgaaaagg aacaacggca aatgccttgg agagaaacga aaaatcccta ttatatttgg
     9361 attagtgaag tgatgttaca acaaacacaa gtcgatacgg ttcgtgatta ttatcatcgt
     9421 tttgttgaag cgtttccgac aattgaagat ttggcgaatg cagatgagga cgatgtatta
     9481 aaactatggg agggtcttgg atactatagt cgtgcacgta attttcacat tgccgccaaa
     9541 gaagtcgtcg catttcatga tggaagcgta ccacaacatc cagagacatt tttaaatttg
     9601 aaaggtgtag gtccatacac ccaagcagct gtgatgagta ttgcttttga tttaccgtta
     9661 gcgacagtgg atggaaatgt ctttcgtgta tggtctcgtt taaatgatga tacacgtgat
     9721 acggcgcttc agtcgacaag aaaagcttat gaaaatgagc tggcgcctta tgttgcacaa
     9781 caatcaggtg attttaatca agcgatgatg gagttaggtg cacttgtgtg tacacctaaa
     9841 gcgccacttt gtctattctg tccagttcaa atgcattgtg aatcctacga acaaggggcc
     9901 gtattagaac gtcctgtcaa aacgaaaaag ttgaagaaaa aaacgttgaa ctttgatgtg
     9961 tatgtcattc aaaatcaatc aggagacttt ttaatagaac aacgtacagc atcattactc
    10021 aaaggtatgt ggcagtttcc gatgattgaa catggtgcga aagaagacat agaaccaacc
    10081 ttagacatca atcatttaac gattcaacgt aaaaatgtag tgaaagtgaa acatcaattt
    10141 acacatttga catggcattt gactgtacat actgcaacgg tggatgaaac ggtcgcaccg
    10201 gttgtcgcaa atggaagaag atggatggca tccgttgaaa aggataacta ctcttttcca
    10261 gtcccgatga caaaaatatt taacgcaata aatgaagcgg aataattaag taataggaat
    10321 ggaatatgat ataataacga ggtgaatttt taacaaggtg gtgtgagaag ttggtcaaat
    10381 cgtgtatacc tcgagaaggg gaatcgatta aaattcaatc ttataaacac gatggcaata
    10441 tacaccgtgt atggtccgaa actacaattt taaaaggaac agcagatgtc gtcatcggtg
    10501 gtaatgatca tacgcttgta accgaaagtg atggccgaac atgggtaacg cgtgagcctg
    10561 caattgtcta tttccattca gaatattggt ttaatgtcat ttgtatgttt cgtgaagatg
    10621 gcgtttatta ttattgtaac ttatcgtcgc cttttgtttg tgatgaagaa gctttaaaat
    10681 atatcgatta tgatttagat attaaagttt atccaaatgg caaatatcat ttattag
//
LOCUS       DANHOL010000084        10686 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.084, whole genome shotgun sequence.
ACCESSION   DANHOL010000084 DANHOL010000000
VERSION     DANHOL010000084.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 10686)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10686)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10686
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.084"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            37..1320
                     /locus_tag="PTC08_001550"
     CDS             37..1320
                     /locus_tag="PTC08_001550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002457511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine dehydrogenase"
                     /protein_id="HDK5683055.1"
                     /translation="MKQLNVALLGLGTVGSGVVKIIEENHQQIKETIQKDIQIKHILV
                     RDKSKKRPLNISRYHLTEDVNDILNDDDLDIIIEVMGGIEPTVDWLKAALSQKKHVIT
                     ANKDLLAVHLRVLEDLAEANGVALKYEASVAGGIPIVNAINNGLNANNISKFMGIFNG
                     TSNFILTKMTEDGAPYETALQQAQDLGFAEADPTDDVEGIDAARKVVITSYLSFNQVI
                     TLNEVKTEGISGVTPQDIDTAKTLGYKIKLIGKGSYAQGKIDASVRPTLIAHAHQLAA
                     VENEYNAIYVIGDAVGETMFYGKGAGSLATGSAVVSDLLNVALQFESNLHTLPPHFEL
                     KTEATKEMMDDGETVTLKEKESYYFVVNTPETSLKQVESTIKSHLPFHKSLQVIELSP
                     TTFAGIVVGIDTDPTSYVEQEADYQVEKIYPVEGV"
     gene            1326..2390
                     /locus_tag="PTC08_001551"
     CDS             1326..2390
                     /locus_tag="PTC08_001551"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HDK5683056.1"
                     /translation="MKLWKGLVEEYKAFLPVDENTPTVTLNEGHTPLIYCDTMSEMLG
                     IELYVKYEGANPTGSFKDRGMVMAVTKAKEQGKKMVICASTGNTSASAAAYAARAGLK
                     AIVVIPEGKIALGKLSQAVMYGAEIVSIEGNFDEALEIVKEVAEDGEIELVNSVNPYR
                     IEGQKTSAFEIVEQLDDQAPDILAIPVGNAGNITAYWKGFKTYEEKYQTGLPHMFGFQ
                     AAGAAPIVNNQVVKNPETIATAIRIGNPASWKQAVQAIEESDGLIEAVTDEEILEAYQ
                     LMTSKEGIFSEPASNASIAGLIKLHRQGKLPQGKKVVAVLTGNGLKDPDTAIGLLENP
                     IQALPNHKESIVQYIKDALK"
     gene            2390..3307
                     /locus_tag="PTC08_001552"
     CDS             2390..3307
                     /locus_tag="PTC08_001552"
                     /EC_number="2.7.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002511052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine kinase"
                     /protein_id="HDK5683057.1"
                     /translation="MKKQLHLEIPASTANLGCGFDSIGMALNKFLRIDAHIIEEDQWR
                     FIHNGPHLVGLPEDETHYIYKIAQQVAAQYDVTLPMLEINMYSDIPLARGLGSSASAL
                     VGALFIANYFGDIELSQYELLQLATQIEGHPDNVAPTIYGGLVVGYHNAETKVTSIAH
                     IDVPAVDFIISIPEYELETVEARKVLPDSITHQDAVKYSAISNTMISAFIQHHYELAG
                     QMMEQDGLHEPYRQHLIRDFEAVKRIAHEHGAYATVISGAGPTILTMIKKENSGPLVR
                     ALRKYVEDCHSELATVNTSGVVSKVTHHF"
     gene            3493..4296
                     /locus_tag="PTC08_001553"
     CDS             3493..4296
                     /locus_tag="PTC08_001553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HDK5683058.1"
                     /translation="MKPDLVVMDMDDTLMTSENRVSDKTKAYLLLLQKNGVKIALASG
                     RPTAGMLPTAKSLKMDEFGSYIMSYNGAQTIELSNEEVVSKKVIEKAEFDKIVDFCRE
                     HELFVLTYHDDTIIYEGEHEYMNIESELTGLPMKKVDDIKDYIQDAVPKVMGVDYEEH
                     IAELIKKMDGEFDNEVDMTTSKPFFLEFMSKGVSKGEAIKKLAERLDLDVNQMVAFGD
                     SANDIEMFKVVGKAVAMNNASDEVKSYADMVTKSHDEDGIPYALDQILS"
     gene            complement(4450..4764)
                     /locus_tag="PTC08_001554"
     CDS             complement(4450..4764)
                     /locus_tag="PTC08_001554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683059.1"
                     /translation="MIGQTNLFDDVLKTEERFVIVVQVLEEKNGKLLKRTLREYSSLT
                     HEQMESLFQHLKELYSETDFEASQSAFAITVYTNLDYAADQVYAHIKRHCGKHEWTHT
                     AK"
     gene            complement(4938..6389)
                     /locus_tag="PTC08_001555"
     CDS             complement(4938..6389)
                     /locus_tag="PTC08_001555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HDK5683060.1"
                     /translation="MEEKNLSRGLQSRHITMIAIGGAIGTGLFVATGGVIAQAGPGGA
                     ILAYLVIGVMLYFLMSSIGEMATFYPVSGAFSSYANRFVDPSLGFTMGWLYWTIWSLV
                     TSVDIIVASSVINYWDAFHFFSPLVWSLIFLALLFLVNIFTVKAFGEAEFWLSLIKVV
                     TIIIFIVLGILMIFGILGGHYYGFKHFTTGEAPFVGGISGFLSVLLIAGFSVGGTEVV
                     AVTAGESDNPKTSMPRAIKQVFWRILLFYVLSIAVISAILAYTDPTLLNQSGSIAQSP
                     FTIVFDRVGIAFAASVINAVILTSLLSAANSGVFTTSRMLFSLSQDGQAPKFLGHIHS
                     RSQLPLRALYTTFIFIAAVTIYANFNPKSVMGLLNIIGALVTFVWASSIIAQIRLRRA
                     IKKQNKDINQLLPYQASFYPVGPIIVIATLLFLILGSSAEAFVHFDLAKLAQNFLPIF
                     ILLLVYIVHKLIHKTRIIPLEEIDLSEHESYRE"
     gene            complement(6743..6892)
                     /gene="rpmG"
                     /locus_tag="PTC08_001556"
     CDS             complement(6743..6892)
                     /gene="rpmG"
                     /locus_tag="PTC08_001556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001265708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HDK5683061.1"
                     /translation="MRVNVTLACTECGDRNYITTKNKRTNPERIEMMKYCPRLNKHTL
                     HRETK"
     gene            7064..7333
                     /gene="rpsN"
                     /locus_tag="PTC08_001557"
     CDS             7064..7333
                     /gene="rpsN"
                     /locus_tag="PTC08_001557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009384394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S14"
                     /protein_id="HDK5683062.1"
                     /translation="MAKKSKIVKEQKREALVAKYAELRRELKAKGDYEALRKLPRDSS
                     PTRLTRRCKVTGRPRGVLRKFEMSRIAFREHAHKGQIPGVKKSSW"
     gene            7414..8391
                     /gene="guaC"
                     /locus_tag="PTC08_001558"
     CDS             7414..8391
                     /gene="guaC"
                     /locus_tag="PTC08_001558"
                     /EC_number="1.7.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015365036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GMP reductase"
                     /protein_id="HDK5683063.1"
                     /translation="MKIFDYEDIQLIPNKSIVKSRSEIDTSVQFGPKRFKLPVVPANM
                     QTVMNESLAEWFAQNDYFYIMHRFDEAARLPFVKKMQSKGLYASISVGVKPGEFEFID
                     ALKAENLTPEYITIDIAHGHSDQVIGMIQYIKEHLPKAFVIAGNVGTPEGVRELENAG
                     ADATKVGIGPGRVCITKIKTGFGTGGWQLAAVNHCSKAARKPIIADGGIRTHGDIAKS
                     VRFGASMVMIGSLFAAHEESPGETVEIEGKKYKEYFGSASEYQKGERKNVEGKKMFVE
                     HKGSLQDTLVEMQEDLQSSISYAGGKDVDALRKVDYVIVRNSIFNGDRD"
     gene            8397..9413
                     /locus_tag="PTC08_001559"
     CDS             8397..9413
                     /locus_tag="PTC08_001559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017174663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CAP domain-containing protein"
                     /protein_id="HDK5683064.1"
                     /translation="MFVIKKFLSITVVGIILLLLIPLQPNETFSKIATPFTQQIDQLV
                     EGKTNETTLKKPKSQNFALRNIQMNMSRNEVEQKLGPPESEIGNEYGTKWQVYHQDFS
                     NFVMVSYIDNKVHGLYTNQNMITSKSGVKYGTAKKAVRKELGQPIKGIQKGRTIYEND
                     NDEYDIFDKDGIYTTAFYDQHENNQLTGLMQISHQMENRLNSQYAAPSKYLQESFEKE
                     DYYLLNAERVQKGLQPLSYSNKLASTARKHSTDMAENQYFDHTNLKGESPFERIEKDG
                     HQYQTAAENLAYGQTSAIFAHHGLMNSSGHRKNILNEHVKTIGIGVDFNEKHQPYWTE
                     NYIG"
     gene            complement(9626..10249)
                     /gene="lexA"
                     /locus_tag="PTC08_001560"
     CDS             complement(9626..10249)
                     /gene="lexA"
                     /locus_tag="PTC08_001560"
                     /EC_number="3.4.21.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor LexA"
                     /protein_id="HDK5683065.1"
                     /translation="MRELTKRQNEIFEFIKHVVQSKGYPPSVREIGEAVGLASSSTVH
                     GHLSRLEEKGYIRRDPTKPRAIEIVNELMGEPVNMEETIYVPVIGKVTAGTPISAIEN
                     VEEYYPLPEHFTSTHNGQIFILNVMGDSMIEAGILDGDKVIVRSQSIAENGDIIVAMT
                     EEDEATVKRFYKEKNRYRLQPENSSLEPIYLEQVTVLGKVIGLFREM"
     gene            10394..10627
                     /locus_tag="PTC08_001561"
     CDS             10394..10627
                     /locus_tag="PTC08_001561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020220332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683066.1"
                     /translation="MLHIKSSEVYLFLSVFIISLILFLSFFLLATDASKTEQTYEMTD
                     HQLKTTPTEQQQKYEQQRNHTNEQSVVAVTLSH"
BASE COUNT         3636 a         1825 c         2129 g         3096 t
ORIGIN      
        1 agtaatttca tcagatttga ttcggaggga aaataaatga aacaacttaa tgttgcatta
       61 ttaggattag ggactgtcgg ttcaggagtc gttaagatta ttgaagagaa ccatcagcag
      121 attaaagaaa cgattcaaaa agatattcag attaagcata ttttggttcg agataaatcc
      181 aaaaagcgac cgctaaatat ttcacgttat catttgacgg aagatgtgaa tgacatttta
      241 aatgatgacg atttggatat tatcatcgag gtgatgggtg gtattgagcc gaccgtggac
      301 tggttaaaag cagcattaag tcaaaagaaa cacgtgatta ctgccaataa agacttatta
      361 gcggtgcacc tacgtgtctt agaagattta gctgaagcaa acggtgtcgc gctcaaatat
      421 gaagctagtg ttgcaggggg tatcccgatt gtcaatgcca ttaacaacgg tttaaatgca
      481 aataacatta gtaaatttat gggaatcttt aatggtactt ccaattttat tttgacaaag
      541 atgacagagg acggcgcacc ttatgaaaca gcattacaac aagcgcaaga tttaggtttt
      601 gctgaggcgg acccaactga tgacgtggaa ggtattgacg cagcacgaaa agttgttatt
      661 acatcgtatt tatcatttaa tcaggtcatt acgttaaatg aggttaaaac agaaggcatc
      721 agtggcgtga caccgcaaga tatcgataca gcaaaaacat tagggtacaa aattaaactc
      781 attggtaaag gctcatatgc gcaaggcaaa attgatgcgt ccgttcgtcc aacgcttatt
      841 gcacatgcac accaactcgc tgctgtcgag aatgagtaca acgcgattta tgtcattggt
      901 gatgcagtcg gtgagacaat gttttacggt aagggcgctg gaagtttagc tacaggttca
      961 gcagttgtga gtgacttact caatgttgca ttacaattcg aatcgaactt gcatacatta
     1021 ccacctcatt ttgaattaaa aacggaggca acgaaagaaa tgatggacga cggtgagaca
     1081 gtgacattaa aagaaaagga aagttattat tttgtagtga atacacctga aacgtcactt
     1141 aaacaagtgg aatcaactat aaaaagtcac ttaccattcc ataaatcgct tcaagtgatt
     1201 gaactctcac cgacaacatt tgcagggatt gttgttggaa ttgacactga tccgacatct
     1261 tatgttgaac aagaagccga ttatcaagtt gaaaaaattt atccagttga aggagtttga
     1321 tacgtatgaa attatggaaa ggtcttgttg aagaatacaa agcatttcta ccagtagatg
     1381 aaaacacacc aacagtgacg ttaaatgaag ggcatacgcc actcatttat tgtgacacga
     1441 tgtcagagat gttaggcatt gaactgtatg ttaaatatga aggcgctaat ccaactggtt
     1501 cattcaaaga tcgaggcatg gtcatggcag tcacaaaagc gaaagagcaa ggcaagaaaa
     1561 tggtgatctg tgcctcgaca gggaatacat cagcttctgc tgcggcatat gcggcgcgtg
     1621 caggtttaaa agcgattgtc gtcattcctg aaggtaagat tgctttagga aagttatcgc
     1681 aagctgttat gtatggtgct gaaatcgtct ctattgaagg aaactttgac gaagcgttag
     1741 aaatcgttaa agaagttgct gaagatggag aaatcgaatt agtcaactca gtcaacccgt
     1801 atcgtattga aggtcaaaaa acgagtgctt ttgaaattgt tgagcagtta gatgaccaag
     1861 caccagatat tttagctatt ccagtaggta acgccggaaa tattactgca tattggaaag
     1921 gttttaaaac gtacgaagaa aaatatcaaa caggcttacc acatatgttt ggattccaag
     1981 cggctggtgc tgcacctatc gttaacaatc aagtcgttaa aaaccctgaa acaatagcta
     2041 cagcgattcg tatcggtaat cctgcaagtt ggaagcaagc agttcaagcg attgaagaat
     2101 ctgacggttt aattgaagca gtcacagatg aagaaatttt agaagcgtat caactgatga
     2161 cttctaaaga gggtattttt agcgaacctg caagtaacgc atcgatagcc ggacttatta
     2221 aattacatcg ccaaggaaaa ttgcctcaag gtaaaaaagt ggttgcagtt ttaactggaa
     2281 atggtttgaa agatccggat acggcgattg gtttattaga aaatcctatt caagcattac
     2341 caaatcataa agaaagtatc gttcaataca ttaaggacgc gttaaaatga taaaaaaaca
     2401 actacattta gagattccag cttctacagc gaacttaggc tgtgggtttg attccattgg
     2461 tatggcgctg aataaatttt tacgtattga cgcccatatc attgaagaag atcaatggcg
     2521 ttttattcac aatggcccac atctcgttgg cttgcctgaa gacgaaacac attacattta
     2581 taagattgca caacaagtcg ctgctcaata tgacgtgact ttgcccatgc ttgaaattaa
     2641 tatgtacagt gatattccat tagcgcgcgg cttaggttca tctgcttcag cgttagtagg
     2701 ggcactattt atcgctaatt actttggaga tattgagcta tcgcagtacg aattattgca
     2761 attggcaaca caaattgaag ggcatcccga taatgttgcg ccaacgattt atggtggttt
     2821 agtcgtgggc tatcataacg ctgaaacaaa agtgacaagc attgcgcata tcgatgtgcc
     2881 agcggttgac tttattattt ccatacctga gtacgaactt gaaacggtgg aagcacgcaa
     2941 agttctacct gacagtatta cacatcaaga tgcagttaaa tatagtgcca ttagtaacac
     3001 gatgattagt gctttcattc aacatcatta tgaactcgct ggacaaatga tggaacaaga
     3061 tggattgcac gagccatatc gtcaacattt aattcgtgat tttgaagcgg taaaacgtat
     3121 tgcccacgaa catggtgcat atgcgactgt gatttccggt gcgggtccaa caattttaac
     3181 aatgattaaa aaagaaaaca gtgggccact cgtgcgtgct ttgcgcaaat atgttgaaga
     3241 ttgtcattct gaacttgcca ctgtaaatac atcaggtgtc gtatcgaaag taacacatca
     3301 tttttaagta ttcatattgt gtgaaagatt gggagcattt cattgtttcc tagtctttct
     3361 ttttgagtga cattaagatt aagacagaag cgcgtcaaaa gcttgatgtg catgctttga
     3421 tttaggcttc tatcattttg aatttactgc agtttagtgt aagataaaat caaattgaaa
     3481 ggagttttgg agatgaaacc agatttagtc gttatggata tggatgacac gttaatgacg
     3541 tccgaaaacc gtgtctctga taaaacaaaa gcatatttat tattacttca aaaaaatggc
     3601 gtaaaaatcg cacttgcctc aggtcgtcca acagcgggga tgttaccaac tgcaaagtca
     3661 ttaaagatgg atgaatttgg aagttatatt atgagttaca atggggcaca aacaattgaa
     3721 ctctctaatg aagaagttgt ttcgaaaaaa gtcattgaaa aagcagaatt cgataaaatt
     3781 gtagactttt gccgtgaaca tgaacttttc gtattaactt atcatgatga tacaattatt
     3841 tatgaaggcg agcatgaata tatgaatatc gaatcagagt tgacaggatt gcctatgaag
     3901 aaagtggacg atattaaaga ctatattcaa gatgctgtgc ctaaagtgat gggtgtcgat
     3961 tatgaagagc atattgcaga attgattaaa aaaatggatg gcgaatttga taatgaggtc
     4021 gatatgacaa cgagtaagcc gtttttcctt gaatttatga gtaaaggtgt atctaaagga
     4081 gaagcgatta aaaaattagc tgaacgttta gatttagatg tgaatcaaat ggtggcattc
     4141 ggtgacagtg caaatgatat tgaaatgttt aaagttgtcg gaaaagctgt tgcgatgaac
     4201 aatgcgtcag atgaagtgaa atcatatgcg gatatggtca caaaaagcca tgatgaagat
     4261 ggtattccgt acgcattaga tcaaatattg tcataaacta tccaatgaaa gcaagagaag
     4321 atcgttgaat aatgagcgat ttcgaccttg ctttttgttt gttctaaaat cgtgttagat
     4381 gaaatggtca tataaatatg ttgggcagta aaaaagaagc actcctcaac agagcacttc
     4441 aaagattcac tattttgcgg tatgtgtcca ctcatgtttg ccacaatgac gtttaatatg
     4501 cgcatacact tgatctgcag cataatctaa atttgtgtac acagtgatgg caaacgccga
     4561 ttgagacgct tcaaaatcgg tctccgaata caactctttt aaatgttgga ataaactttc
     4621 catttgttcg tgcgttaaac tactatactc tcttaacgtc cgtttcaaca actttccgtt
     4681 tttctcttct aaaacttgta ccacaatgac aaagcgttct tcagttttta aaacatcatc
     4741 gaaaaggttt gtttgtccta tcatcacgtg cccaccttta caatttatta atttaattat
     4801 acatgaaatc gcaatatgta ggaaatggaa tagtcaagtt ttttaatgaa attcatcttt
     4861 tcaaacacga tgttattgta atggaagtag aatagacgaa aaaaagagcc ctgcacggaa
     4921 ggctccttta tttgagttta ttcgcgataa gattcatgtt cgcttaaatc aatctcttca
     4981 agtggaatga tgcgtgtctt gtgaatcaac ttatgaacga tatagacgag tagcaaaatg
     5041 aaaataggta aaaagttttg tgctaatttc gctaaatcaa aatgaacaaa tgcttcagct
     5101 gaactaccga gaattaagaa taacaacgtt gcgataacga taataggtcc aacagggtaa
     5161 aatgacgcct gataaggtaa caattgattg atatctttat tttgcttttt aatagcacgt
     5221 cgtaatctga tttgagcaat aatacttgag gcccaaacaa atgtaacgag ggcaccaata
     5281 atattgagca agcccatgac actttttgga ttaaagtttg cataaatcgt aacggctgca
     5341 atgaaaataa atgttgtgta taaagcgcgt aatggcagtt gtgaacgtga atgaatgtga
     5401 cctaaaaact ttggtgcttg tccgtcttga cttaatgaga acaacatacg acttgtggta
     5461 aaaacacctg aatttgcagc tgaaagtaat gatgttaaaa tcaccgcgtt tataacagaa
     5521 gctgcaaaag caataccgac tctatcaaaa acaatcgtaa atggactttg agcgattgaa
     5581 ccactttgat tgagtaatgt tggatctgta taagctaaaa tggcagaaat caccgcgata
     5641 gacaacacat agaataataa aatgcgccaa aaaacttgtt tgatcgcacg tggcatggac
     5701 gttttcggat tatctgattc acccgctgta actgcaacga cctcagttcc accaacggaa
     5761 aagcctgcga ttaataagac gcttaagaat cctgaaatgc ccccaacaaa tggtgcttca
     5821 cccgttgtaa agtgtttaaa accgtaataa tgccctccta aaataccgaa aatcattaaa
     5881 atgcctagga cgatgaaaat aatgatcgtg acaactttaa ttaaagatag ccaaaattca
     5941 gcttcaccaa acgctttaac ggtaaagata ttcactaaaa ataataaggc taaaaagatt
     6001 aaactccata caagcggtga gaagaaatga aatgcatccc aatagttaat gacactcgat
     6061 gcaacgataa tatctacact tgtgacaaga gaccaaattg tccagtataa ccaacccatc
     6121 gtaaaaccta aagatgggtc tacaaaacga ttggcataac tactaaatgc tccagacaca
     6181 gggtaaaaag ttgccatttc tcctattgat gacattaaaa agtataacat caccccgatg
     6241 actaaataag caagtatcgc gccacctgga ccagcttgag ctatcacccc accagttgcg
     6301 acaaagagcc ctgtaccaat cgcgcctcca atggcaatca ttgtaatatg tcttgattgg
     6361 aggcctctac ttaaattttt ttcttccata catatcttct cctcaacaat tagctttcta
     6421 tatattttac ttgttaaggg gatgagtttc aataaaaatt tgcgacttta aagcgataaa
     6481 atatcgaggg gattaaaatt gagtatgaaa aatagaaaat acggtggaga aattcatcat
     6541 gatacaaagg ttgtaagcag ttttgcggct aatatgtaga atagttgtat aatgaaaagg
     6601 taaataaaaa agtcaaatga tgtttgaaat catttgactt atgtcgtatt ttaattataa
     6661 gcaaggtgac gcgctcgcta acgcattgat gtacttgtgt aataagcgtc gcacaatcaa
     6721 tgacagtgat tattcactat gattattttg tttctctgtg taaagtgtgt ttgtttaatc
     6781 ttgggcaata cttcatcatt tcaatacgct caggattagt tcgtttgttt ttagttgtga
     6841 tgtagttacg gtcaccacat tcagtacatg ctaaagttac atttacgcgc atgactagtc
     6901 cctccttttc aaattgaaac tattacgatt tattatttta gcacgagcca agcattttgc
     6961 caactctttt ttattttcat caattaaagt cttgccaaga agaagaggca tgtgctaata
     7021 tgtaaaacgt aattattacg atttgtaagg agtgttcata tatatggcta aaaagtcgaa
     7081 aattgtaaaa gagcaaaaaa gagaagcatt agtcgcaaaa tatgctgaat tacgtagaga
     7141 attaaaagca aaaggcgact atgaagcgtt aagaaaatta ccaagagatt cttcaccaac
     7201 acgtttaaca cgcagatgta aagtgacagg tcgtcctcgt ggtgtgctac gtaaatttga
     7261 aatgtctcgt attgcattta gagaacatgc tcataaaggt caaattcctg gcgttaaaaa
     7321 atcaagttgg taaagcgacc ccctctttat tttactttgt tccttaaagg tagtatatta
     7381 tcaaaggaat aaaaagataa aggggctttt tttatgaaaa tttttgacta tgaagatatc
     7441 caactcatcc cgaataaaag tattgtaaaa agtcgttcag aaatcgatac atctgtacaa
     7501 tttggcccga aacgttttaa attgccagtt gtgccagcta atatgcaaac agtgatgaat
     7561 gaatctttgg cagaatggtt tgcgcaaaat gattacttct atattatgca ccgatttgat
     7621 gaagcagcgc gtttaccttt tgtcaaaaag atgcaaagta aagggttata tgcttcaatt
     7681 tctgtaggtg ttaaacctgg agaatttgaa tttattgatg ccttgaaagc tgagaatctt
     7741 acaccagaat atattacaat tgatattgca catgggcatt cagatcaagt gattggcatg
     7801 attcaatata ttaaggaaca tttacctaaa gcgtttgtga ttgcaggtaa tgtcggtaca
     7861 ccagaaggcg tgagagaact tgaaaacgcg ggtgctgatg caacgaaagt cggtattggt
     7921 cctgggcgtg tttgtattac aaaaatcaaa actggatttg ggacaggtgg atggcaatta
     7981 gctgcagtca atcattgtag taaagctgcc cgtaaaccta ttattgcaga cggtggtatc
     8041 cgtacacatg gcgacattgc aaaatcagtg cgctttggtg catcaatggt catgattggt
     8101 tctctctttg cggctcatga ggaatcaccg ggtgagacag tggaaataga aggtaaaaaa
     8161 tataaagagt actttggcag tgcgtcagaa tatcaaaaag gtgaacgtaa aaatgttgaa
     8221 ggcaaaaaga tgtttgtcga acataaaggc tcacttcaag atactcttgt agagatgcag
     8281 gaagatttgc aaagctcgat ttcttatgca ggtggcaaag atgtagatgc cttaagaaaa
     8341 gtagattatg tcatcgtacg caattctatc tttaacggag accgtgacta aaggagctgt
     8401 tcgttatcaa aaaatttctc tcaatcaccg ttgtaggtat catactttta ttactcatac
     8461 cacttcagcc gaatgagaca ttttctaaaa ttgcgacacc atttacccaa caaatcgatc
     8521 aacttgtaga aggtaaaacg aacgaaacaa cacttaaaaa gcctaaatca caaaattttg
     8581 cacttagaaa tattcagatg aacatgagtc gtaatgaagt cgaacaaaaa ctcggtccac
     8641 ctgagtcaga aattggtaat gaatacggaa caaaatggca agtttatcat caagatttta
     8701 gtaacttcgt gatggtcagc tatattgata acaaggtgca cggtctgtat acaaatcaaa
     8761 atatgattac atcgaaaagt ggtgtgaaat acggaacagc taaaaaagcg gtacgtaaag
     8821 aactgggtca accgattaaa gggattcaaa aaggtcgcac catttatgaa aatgataacg
     8881 atgaatacga tatatttgat aaagacggga tttatacgac tgcattttat gatcaacatg
     8941 aaaataatca attaacagga ttaatgcaaa tcagtcatca aatggaaaat agattgaaca
     9001 gtcaatatgc agccccatca aaatatttac aagaaagttt tgagaaagaa gattattatt
     9061 tattaaatgc tgagagagtt caaaaaggat tgcaacccct tagctattcg aacaaattag
     9121 ctagcactgc gcgtaagcat agtacggaca tggctgaaaa tcaatatttt gaccatacaa
     9181 atcttaaagg ggaatcacca tttgagcgta ttgaaaaaga cggccatcaa tatcagacag
     9241 cggcagaaaa cttggcatat ggtcaaacga gtgcaatttt tgcgcaccat ggattaatga
     9301 attcaagtgg gcatcgtaaa aatattttga atgaacatgt caaaacaatc ggtattggtg
     9361 tagactttaa tgagaaacac cagccgtatt ggactgaaaa ctatataggc taatgttttg
     9421 aatggtaatt ttggggaata gcaatcgtgg aagtgattta aatgacatca aagcagaatc
     9481 attcaaagca aaatactttg aataaaaagc aatcacaaga tgatatttta atacaagtga
     9541 aaaaaattct gaataaaaat tagcaagcgc ggaccttaca tataagttgt aaggtccatt
     9601 ttttgaagga gtggtttacg caagattaca tttctctaaa taagccaatg actttaccta
     9661 atactgtaac ttgttctaga taaataggtt ctaaactact attttctggt tgtaaacgat
     9721 aacgattttt ttctttgtag aaacgtttta cagtagcttc atcttcctca gtcattgcaa
     9781 caatgatgtc accattttca gcaatcgatt gacttcttac aataacttta tctccgtcta
     9841 aaataccagc ttcaatcata ctatctccca taacgttaag tataaaaatc tggccgttat
     9901 gtgtcgatgt aaaatgttca ggcaacggat aatactcttc aacattttca atagcagaaa
     9961 taggtgtccc tgctgtaact ttaccgatga cagggacata gattgtttct tccatattca
    10021 caggttcgcc catcaattca ttcacaatct ctatagcgcg cggttttgtt gggtctcgtc
    10081 gaatatagcc cttttcttct aaccttgaca aatgcccatg tacagtcgaa cttgaagcta
    10141 accccacagc ctcaccaatt tcacgaacac ttggtggata cccttttgat tgcacgacat
    10201 gtttaataaa ttcaaatatt tcattttgtc ttttagttaa ttctctcatt ttccacactc
    10261 cttctcagta ctatttgttg atattataac ataccacgcg aacattaaca aacgtttgtt
    10321 cgttttagtg ttgacataga acgttcgttc tgttagatta ttaatgcaaa caaatgttcg
    10381 aggagtgacg aagatgcttc acattaaaag ttcagaggtt tacttgttct tatcagtgtt
    10441 tatcatttct ttaatcttat ttttatcatt ctttttactc gccactgatg caagtaaaac
    10501 agaacaaacg tacgaaatga cagatcatca acttaaaacg acaccaacag aacaacaaca
    10561 aaaatacgaa cagcagcgta accatacaaa cgaacagtcc gttgtagctg tgacgttgag
    10621 tcattaaata agccatacaa agaccgtagt gaaaaaaagg ttcaggtgat tttctctatg
    10681 gtcttt
//
LOCUS       DANHOL010000085        10601 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.085, whole genome shotgun sequence.
ACCESSION   DANHOL010000085 DANHOL010000000
VERSION     DANHOL010000085.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 10601)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10601)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10601
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.085"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            55..936
                     /locus_tag="PTC08_001562"
     CDS             55..936
                     /locus_tag="PTC08_001562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation transporter"
                     /protein_id="HDK5683067.1"
                     /translation="MQLEYKISQAKKGATLSIITYTFLTLLKIAYGWLASSQGLVADG
                     INNATDVISSIAILIALQISMKPVDNNHPYGHYRSEFIASLIASFIMFAVSIQVIITG
                     VKHFYQGEFVQPNQSAIIVGMISSIVMFAVFIFNRNLSKKVNSSALRAASYDNLSDAL
                     VSIGTVIGVLGVYMGVPMLDTIAAIVIGLLIMKASIDIFKETAVTLTDGYDEEELTQI
                     QQIISSVPGIKEIRDIKARSHGVISFIDVTIAVNPKLNVIESHEISDHIESKLQARLG
                     EVETIVHIEPYLITNVE"
     gene            complement(1005..1631)
                     /locus_tag="PTC08_001563"
     CDS             complement(1005..1631)
                     /locus_tag="PTC08_001563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HDK5683068.1"
                     /translation="MPKIALVDDHFIVRQGLEFLLSTQPQIEVVGSFGEGQALLDALA
                     TDQIEPELILVDLVMPEMNGITLIQKLKEQHAGIKILVLTSYVDEEHVMSAMQAGADG
                     YEMKDVDPEALMTSIETVLQGDKVIHKDAQQVMDTVITKPHMLNKLSKRETEVLKEMA
                     KGKTNKEIAETLFVSEKTIKTHVSHIFSKLEVTDRTQAAIYAMENHLI"
     gene            complement(1631..2755)
                     /locus_tag="PTC08_001564"
     CDS             complement(1631..2755)
                     /locus_tag="PTC08_001564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing sensor histidine kinase"
                     /protein_id="HDK5683069.1"
                     /translation="MEKPTRLALLKEIAEFLNEETELQSMLDGALDSLIKGSDFTTGW
                     IFFIDEEGHHTLESQHSLPSALTNRQCHYMKEGTCWCVQAYHNHKLTKASNIINCSRI
                     NLASREFVTETEDITHHATVPLRSGNEQFGLLNVATPFTTHYSDEDLELLESVAFQIG
                     SAIKRIDLNNQEKEAARINERNRLARDLHDSVNQMLFSLKLTAHAAGQMTQEETSKRA
                     FMQIEQTSQNAVNEMRALIWQLKPVGLEKGLVHALKNYASLIGLDIDVTVKGLIDLEN
                     KIETHLYRVMQEAMNNTKKHAQTNHMDIVLNQTDDYLIVELKDNGIGFDVTQVDSAEK
                     HGLSNMRQRIKFLKGTIKMASDQGTKITIQLPLQQPREGQ"
     gene            2909..3739
                     /locus_tag="PTC08_001565"
     CDS             2909..3739
                     /locus_tag="PTC08_001565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HDK5683070.1"
                     /translation="MKFKVADTFNEQSIRDIFKTLQLPKKELHTLNMSKSITVNDEAA
                     NLQTIVHTGDEIYIPDEDAKSQYLPSYRYAQIAYEDDFLAIVYKPKGVKTHPNDLKES
                     NTLMNHVIYTLNHPYVEPIHRLDQETVGLLIVAKHPIIKKILDRMLENNDIHRIYKAQ
                     VKSLLPIKPQTIDLPIGKDKFHPNKRRVSPTGQRAVTHILSSEMIEEGVCEVMLKLDT
                     GRTHQIRVHLAEIGYPVLGDPLYSDSKLRQLQLESYQIEMTHPITQQPISVTIDDIKQ
                     "
     gene            complement(3807..5975)
                     /locus_tag="PTC08_001566"
     CDS             complement(3807..5975)
                     /locus_tag="PTC08_001566"
                     /EC_number="2.7.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019164974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA degradosome polyphosphate kinase"
                     /protein_id="HDK5683071.1"
                     /translation="MKVTIEKGSLDLNHPDYYNNREVSWLDFNYRVLQEACDDQNPLL
                     EQLKFIAIGSANLDEFFMVRVAGLKDQVKMGFNKPENKAQLTPQQQLKAIEQKNRQNV
                     AFQYQRFNTLVETLKTYDVYLCKPDVLNEDMRKQLEQIFLNDILPTLTPLGIDAYRPF
                     PKLNNKTLNIFVDIDTGDEINSAIVQIPTLLNRFITINEGNRQYIILIEDMISFFMGY
                     LFKGYEILNTYTFRITRNADLTIHEDGAEDLLIEIERFLKERKSGAAVRLEIDHREQQ
                     EMQIDWLIDTLELEPQDVYYTNGPLDLTMVFELVDHLSHKLKDLKYERYTPQVPQSLG
                     DDNVYDLALKRDIFFHHPYESFDPIVDFITEASEDPDTLAIKQTLYRVSSDSPIIEAL
                     KNAAENGKQVTVLVELKARFDEENNVHWAKMLEEAGCHVMYGMTHLKTHSKITLVVKR
                     VNGKLVPFVHLGTGNYNDKTAKLYTDMGIITTNREIGEDAMNFFNYLSGYSMKPDYQQ
                     LIVAPYEIRDLFIERIDEEIESHRQHGNGKMMMKMNSLTDKALIKKLYEASQAGVQVK
                     LIIRGICCLKPGIPGISDNIEVVSIVGRLLEHSRIYYFYNNGKEKIYLSSADMMTRNM
                     IKRVEILFPILDKRIARRLVDFMHLQLSDNQKGRYQDASGVYHYVKNELAPINSQEYL
                     MREAQEYGLALSKQNMIETGQPVRAKRNWMDRVKGHLKRK"
     gene            complement(6051..7577)
                     /gene="ppx"
                     /locus_tag="PTC08_001567"
     CDS             complement(6051..7577)
                     /gene="ppx"
                     /locus_tag="PTC08_001567"
                     /EC_number="3.6.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exopolyphosphatase"
                     /protein_id="HDK5683072.1"
                     /translation="MERNGLIDIGSNTIRLVIFRYDPKTGLNEIQNIKTPARLSQYLD
                     AEQNMTQEGIDVLTTALRSFKKVATDFEVEHLYPIATAAMRQSKNQKEILKHIQQELD
                     LEIIMIPEEDEAFYGSYAVTHTTSIRNGITVDIGGGSTELTLFKEKKIKEAISFPFGV
                     VTLTRMFFEGKEHNDKDAIKKMEKFLKSEFGKVSWIQNQHINLVGIGGSARNCARIHQ
                     SLHQYPIAGVHGYTMEQSDLKEVFQMLKKSSRDTLTTLDGLSRDRVDIILPAVSVFNV
                     LFDMIDATAFTFSRKGIREGFIMNQIAKKYPKEFNKTNVLQDALRHLANEYKIEESGA
                     NQRVKLAESLLEQLTKEKKLKIDEDLKQVFLEAAYIYYLGRFIDSDSSSQHTYYIIAN
                     SGINGLSHKERVRLALLASFKNKTLLKLYSEETNWFSDDELSDIQALGGIIKFVNALN
                     ISNTNSVQDVKLQSTKEGYDLFVNDQGESIAESYQSNRQKKHIEKVLKTKVNIIFTNA
                     "
     gene            complement(7598..8983)
                     /gene="fumC"
                     /locus_tag="PTC08_001568"
     CDS             complement(7598..8983)
                     /gene="fumC"
                     /locus_tag="PTC08_001568"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011302807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fumarate hydratase"
                     /protein_id="HDK5683073.1"
                     /translation="MSVRIEHDTFGQIEVPADKYWGAQTQRSKQNFPVGKEKMPIEVV
                     YGFAQLKRAAALANNELGKLSDAKKDAIVYACDRILAGELDEHFPLVVWQTGSGTQSN
                     MNVNEVVSYVANENLKEKGSDETIHPNDDVNKSQSSNDTFPTAMHVALYHEVEKRLEP
                     ALKGLRETFYKKENEFKDIIKIGRTHLQDATPITLGQEISGWRYMLDVCENLLAESKK
                     HILNLAIGGTAVGTGINAHPEFGTKVAGYIAENTGYPFVSSENKFHALTAHDEVVQLH
                     GSLKALAGDLMKIANDVRWLASGPRAGLAEISIPENEPGSSIMPGKVNPTQCEMLTMV
                     AVQVMGNDTVVGFSSAQGNFELNVFKPVILHNTLQSIYLLADGMETFNQNCAVGIEPI
                     PENIDNYLNRSLMLVTALNPHIGYEKAAAIAKKAHKEGITLKESAIQSGYVTEEQFEE
                     WIKPENMVHPK"
     gene            complement(9213..9656)
                     /locus_tag="PTC08_001569"
     CDS             complement(9213..9656)
                     /locus_tag="PTC08_001569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019164970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683074.1"
                     /translation="MKLHQKWVTLIIISTIINLLSIKAFPLALGTLYLPVLFKIVQLQ
                     LNLSNGLVDDAQSHVKTFVKTNQKGIVISVICCIAITVALTIYLDDFYNQFSGILGVF
                     IQISPVMMVIGLVLYILAAIAVVQAVKHKFMHTEAVKVKETTSNE"
     gene            complement(9777..9938)
                     /locus_tag="PTC08_001570"
     CDS             complement(9777..9938)
                     /locus_tag="PTC08_001570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019164969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683075.1"
                     /translation="MKDEQKHYDNEMVDSFDDVVELGKEMEQISEANDEEKLNQAHDS
                     KVRSDKDTK"
     gene            complement(9959..10558)
                     /locus_tag="PTC08_001571"
     CDS             complement(9959..10558)
                     /locus_tag="PTC08_001571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosamine-6-phosphate isomerase"
                     /protein_id="HDK5683076.1"
                     /translation="MAMNFKVFKDAETAATFTADILRKQLNNNPTSIVGLHLNQEEAP
                     VLDALKKDVDRHSVDFSQIHVLDYDAQQSYYQALGVPEKQIHHVPEDEKVESFIKHHA
                     KTKDNKGKLTLQVVTIDTKGQIGIPMNDALLPAREIIVVVTGAVKAEQVKKLYEENGN
                     TTFIPSALKSHRMVTVVLDEAAAQGLPEDVRNYFTSLYA"
BASE COUNT         3063 a         2145 c         1726 g         3667 t
ORIGIN      
        1 ggttagataa tcacagtctc aaaaccttat caattcattt tagaggtgtt ttcgttgcaa
       61 ttagaatata aaatttctca agctaaaaaa ggcgcaacac taagcatcat tacttataca
      121 tttttaacat tattaaaaat tgcatacgga tggttggcga gcagtcaagg tctagtggca
      181 gacggaatta acaatgcaac agatgtcatt agttcgattg ccatactcat tgcacttcaa
      241 atctctatga aacctgtgga taacaatcat ccttatgggc attatcgttc tgaatttatc
      301 gcatcactca ttgcttcatt cattatgttt gcggtcagta ttcaagtgat tattacaggc
      361 gtgaagcatt tttaccaagg cgaattcgtt cagccaaacc aatctgctat tattgtcggt
      421 atgatttcaa gtattgttat gtttgctgta tttattttca atcgtaacct ttctaaaaaa
      481 gtgaatagca gtgctttaag agcagcgagt tatgataacc tttcggatgc gcttgtgtcg
      541 attggtacag tgatcggcgt tttaggcgtt tatatgggcg tgccgatgct cgatactatt
      601 gcagccattg tgattggttt gctcattatg aaagcaagta ttgatatttt taaagagacg
      661 gccgttacac ttactgatgg gtatgacgag gaagagctta cacaaataca acaaattatt
      721 tcatctgttc ctggtattaa agagattcgt gatattaaag cgagaagtca cggtgttatt
      781 tcatttatcg acgtcactat agctgtcaac cccaaattaa atgtcatcga aagtcatgag
      841 atatctgatc atattgaatc aaaattacag gcacggctag gtgaagttga aacgattgta
      901 catattgaac cttatttaat cactaatgtt gaataagtat gcaaaaaaac aggagattgg
      961 acgatgatta tccatactcc tgtttataat ttaatgcttt caaattaaat caaatgattc
     1021 tccatggcat aaatcgcggc ttgtgtacga tcggtcactt ccaatttaga gaaaatgtga
     1081 ctcacatgcg ttttaatcgt cttttccgat acgaacaatg tttcagcaat ttctttattc
     1141 gtcttccctt tcgccatttc tttcagcact tctgtttccc gtttggacaa tttattgagc
     1201 atatgcggct tcgttatgac tgtatccatc acctgttgcg catctttatg aatcacttta
     1261 tctccttgta aaaccgtttc aatagaggtc attaatgctt ccggatcgac atccttcatt
     1321 tcataaccgt ctgcacctgc ttgcatcgct gacatgacat gctcttcatc tacataactt
     1381 gtaagcacta atattttaat acctgcatgt tgttctttca atttttgaat taatgtaatc
     1441 ccattcattt caggcataac caaatcaaca aggataagtt ctggttcgat ttgatcggtt
     1501 gctaaagcat ctaatagtgc ttgaccttcc ccaaagcttc ctacaacttc tatctgtggt
     1561 tgtgtcgaaa gtaaaaattc taagccttgc cttactataa aatgatcatc cacaagtgca
     1621 attttaggca ttattgtccc tccctgggct gttgaagtgg tagttgtatt gtaatttttg
     1681 ttccttgatc acttgccatt tttattgttc cttttaaaaa tttaatccgt tgtcgcatat
     1741 tcgacaatcc gtgtttttcg gccgaatcaa cttgagtcac gtcaaatcct ataccgttat
     1801 ccttcaattc aacaatcaga tagtcgtctg tttggttcaa cacaatatcc atatggttcg
     1861 tttgcgcatg ctttttcgta ttattcattg cttcttgcat gacacggtac agatgggtct
     1921 caattttatt ttctaagtca atgagtcctt tgaccgtcac atcaatatct agacctataa
     1981 gacttgcgta attttttaat gcatgaacaa gccctttttc gaggcctacc ggttttaact
     2041 gccaaattaa cgcacgcatt tcattcacag cgttttgact cgtttgctct atctgcataa
     2101 atgcacgttt tgacgtttcc tcttgcgtca tttgacctgc cgcatgtgcc gttaatttta
     2161 aagaaaacaa catttgatta accgaatcgt gtaaatctcg agctaagcgg ttacgttcat
     2221 taattcgtgc cgcttctttc tcttgattgt tcaagtcaat ccgttttatc gcagaaccga
     2281 tttgaaatgc aacagattct aacaattcga ggtcttcatc cgagtaatgc gtcgtaaacg
     2341 gcgtcgcgac atttaacagt ccaaattgtt cattaccaga gcgtaaaggt actgtcgcat
     2401 gatgggtaat atcttcagtt tctgtcacaa attcacgact ggctaaatta atgcgcgaac
     2461 agttaatgat attagaggct ttggtcaatt tatggttatg gtatgcttgg acgcaccaac
     2521 atgtcccctc tttcatataa tggcattggc gattggttaa agctgaaggt aatgagtgct
     2581 gtgactctaa tgtatggtgg ccttcttcat caatgaaaaa tatccaccct gttgtaaaat
     2641 cgcttccctt aattaaagag tctaacgcac cgtcgagcat ggattgtaat tcagtttctt
     2701 cattaaggaa ttcggcaatt tcctttaata acgccaatct tgttggtttt tccattattg
     2761 tcactccact ctttgctaca catcaatcat ccaattttta ttcgtgcatg gatgtacatt
     2821 taactttatt atacacgttg tttcaatgaa taaaaccatc aatcacgatt cgttttgtgt
     2881 tatgataaag gaaattaagg aggattttat gaaatttaaa gttgccgata catttaatga
     2941 acaatccatt cgtgacatat ttaaaacatt acaattgccc aaaaaagagt tgcatacatt
     3001 gaatatgtca aaatctatca cagtgaatga tgaagctgca aatttacaaa ctatcgtcca
     3061 tacaggtgac gaaatataca ttcctgatga agacgcgaaa agccaatatt taccgagcta
     3121 tcgttatgcg caaatcgctt atgaagacga ctttttagcg attgtctaca aacctaaagg
     3181 cgtgaaaaca catccgaatg atttaaaaga aagtaatacg ttaatgaacc atgtcattta
     3241 tacgttgaac cacccttatg ttgagcctat tcatcgtctt gaccaagaga cagtcggctt
     3301 acttattgtg gcgaagcatc cgatcatcaa aaaaatatta gatcgtatgt tggaaaataa
     3361 tgacattcat cgtatttata aagcacaagt gaaaagttta ttgccaatta agccacaaac
     3421 gattgattta ccaattggca aggataaatt ccatccgaat aaacgtcgtg tctctcctac
     3481 cggtcaacgt gcagtgacac atattttgtc ttctgaaatg attgaagaag gtgtttgtga
     3541 agtgatgtta aagttagata ctggtcgtac acaccaaatt cgtgtgcatc tcgctgaaat
     3601 tggttatcct gtactggggg atccattata tagtgattcg aaattacgtc aattacagct
     3661 tgaaagttat caaattgaaa tgacgcatcc gatcacgcaa caaccgattt ctgtgacgat
     3721 tgatgatatt aaacaataat taattacagg cagatttgag ggcttagaca acaccatgtc
     3781 caagcccccc ttttttatac gcttcattat ttacgcttca gatgcccttt cacacggtcc
     3841 atccaattcc tttttgcgcg tacgggttgt cctgtctcaa tcatattttg cttggacaat
     3901 gctaacccat attcttgtgc ttcacgcatt aaatattctt gtgagttgat cggtgctaac
     3961 tcatttttaa cgtaatgata cacacccgaa gcatcttgat aacgaccttt ttgattgtca
     4021 gaaagttgta agtgcataaa atctaccaat cgtctcgcaa tgcgtttatc caaaattggg
     4081 aataaaattt caacacgttt tatcatattt cgcgtcatca tatctgcaga agatagatat
     4141 attttctctt tgccattgtt atagaagtaa taaatacgtg aatgttctaa caaacgtccg
     4201 acgatactca cgacttcaat attatcgcta ataccaggaa tgcccggttt caaacaacaa
     4261 atcccacgaa taattaattt cacttgtaca cctgcttgtg acgcttcata caatttttta
     4321 attaatgctt tatccgtcaa tgaattcatt ttcatcatca ttttaccgtt tccgtgttga
     4381 cgatggcttt cgatttcttc atcaatacgt tcaataaata agtcacgtat ttcgtatggt
     4441 gccacgatta actgttgata atccggcttc atggaataac cactcaaata attgaagaaa
     4501 ttcatcgcat cttctccaat ttctcgattt gttgtaataa ttcccatatc tgtatacaat
     4561 ttggccgttt tatcgttgta atttcctgta cctaaatgca caaaaggaac gagtttacca
     4621 ttgacacgtt tgacgaccaa tgtaatttta ctgtgggttt tcaaatgcgt cataccatac
     4681 atgacgtgac aacccgcttc ttccaacatt tttgcccaat gcacattatt ttcctcatcg
     4741 aaacgcgctt ttaattccac taataccgtg acttgtttac cattttcagc agcattttta
     4801 agtgcttcaa taatcggtga atcactgctg acacggtata acgtttgttt aattgccaat
     4861 gtgtcggggt cctcagatgc ttccgttata aagtcaacaa tcggatcaaa ggattcatac
     4921 ggatgatgga agaaaatatc acgtttcaac gccaaatcat acacattgtc atcgcctaaa
     4981 gattgcggca cttgtggtgt atagcgctcg tatttcaagt cctttagttt atgtgataaa
     5041 tgatccacca attcaaatac catcgttaaa tcaagtgggc cattcgtata atacacatct
     5101 tgaggttcta attctaacgt atcaatcaac caatctattt gcatctcttg ttgttcacga
     5161 tgatcaattt ctaacctcac cgctgcacca cttttacgct cttttaaaaa gcgttcaatt
     5221 tcaatcaaca aatcttcggc accatcttca tgaatcgtta aatcggcatt tcttgtaatt
     5281 ctaaatgtat acgtattcag aatttcatat cctttgaaaa gataacccat gaaaaaagaa
     5341 atcatatcct cgattaaaat aatatattga cgattgcctt cattaattgt aataaaacga
     5401 tttaatagtg tggggatttg aacgattgct gaattaattt catcaccagt atcaatatcg
     5461 acaaaaatat ttaatgtttt attgtttagt tttggaaatg gtcgatatgc atcaatgccc
     5521 aacggtgtta atgtcggcaa aatatcattt aagaagattt gttcaagttg cttccgcata
     5581 tcttcattta aaacatccgg tttgcataaa tacacatcat atgttttcaa agtttcaact
     5641 aaagtattga aacgttggta ttgaaaggca acgttttgac gatttttctg ttcaattgcc
     5701 tttaactgtt gttgcggcgt taattgcgct ttattctcag gcttattaaa tcccattttg
     5761 acttggtctt ttaatcctgc cacacgcacc ataaaaaatt catctaaatt tgcgctccca
     5821 atcgcaataa acttaagttg ctcgagtaat gggttttggt cgtcacaggc ttcttgcaat
     5881 actctataat tgaagtctaa ccagctgact tcacgattgt tataataatc tggatggttc
     5941 aggtccaaac ttcctttttc aatagtcact ttcattgtca ccccattaat attttacaaa
     6001 acatagcgca agtccctatt tagcgtaaca taaaatgaat gggctataat ttaagcattt
     6061 gtaaaaataa tattaacctt tgttttaagt actttttcga tatgtttctt ttgtcgatta
     6121 gattgataag attcggcaat cgattcacct tgatcattga caaacaagtc gtaaccttct
     6181 tttgttgact gtaatttcac gtcttggaca ctgttcgtat tagagatatt taatgcgttt
     6241 acaaacttaa taatgccccc taatgcttga atgtctgata gttcatcatc agaaaaccaa
     6301 tttgtctctt cactatacaa tttgagtaac gttttatttt taaagcttgc gagtaatgcc
     6361 aatcgcacac gctctttgtg tgataagccg ttaatccctg aatttgcgat aatgtaatac
     6421 gtatgttgtg aactcgaatc ggaatcaata aatcgaccta aataataaat atacgccgct
     6481 tcaagaaaaa cttgctttaa atcttcatca attttaagct ttttctcttt cgtcaactgt
     6541 tctaagagcg attcggctag tttcacacgt tgattggcgc cactttcctc gattttatac
     6601 tcattggcta aatgacgtaa cgcatcttgc agaacattgg ttttattaaa ttcttttgga
     6661 tactttttag caatttgatt cataatgaaa ccttcacgta tcccttttct tgagaaagtg
     6721 aacgctgtcg catcaatcat atcgaataac acattaaata ccgatacggc aggtaaaatg
     6781 atgtctacac gatcacgact caatccatct aaagtcgtta acgtgtcacg tgaagatttt
     6841 ttaagcattt gaaatacttc ttttaaatca ctttgttcca tcgtatagcc atggacaccc
     6901 gcgataggat actgatgtaa agactgatga atacgtgcac agttacgcgc agaaccaccg
     6961 ataccgacta aattaatatg ctgattttgt atccatgaca ctttgccaaa ttcacttttc
     7021 aaaaactttt ccattttctt aatcgcatct ttatcattat gctcttttcc ttcaaagaac
     7081 atccgtgtta aagtgacaac accgaacgga aaactgatgg cttctttaat ctttttttct
     7141 ttaaatagtg ttaactctgt agagccccca ccgatatcga cagtgatgcc attccgaata
     7201 cttgtcgtgt gcgtgactgc ataagagcca taaaaagctt catcttcttc aggaatcata
     7261 ataatttcaa ggtcgagttc ttgttgaata tgttttaaaa tttctttttg gtttttagat
     7321 tgacgcatcg ctgctgtcgc aatcggatac aaatgttcta cttcaaaatc tgtcgctacc
     7381 tttttaaaac ttctgagtgc tgtggttaaa acatcgatcc cttcttgcgt catattctgt
     7441 tcagcatcta aatattgact taatcgtgcc ggtgttttaa tgttttgaat ttcgtttaat
     7501 cctgttttcg gatcgtatcg aaaaatcact aagcggattg tgtttgaccc aatatctatt
     7561 aaaccgttac gttccatgtt taaaacttgc ctccatacta tttcgggtgg accatgtttt
     7621 ctggcttaat ccattcctca aattgttctt ctgtcacata gcctgactga attgcagatt
     7681 cttttaaagt tattccttct ttatgtgctt ttttcgcaat ggctgctgct ttttcgtaac
     7741 caatatgtgg attcagtgca gtcactaaca tcaatgaacg gttcaaatag ttatcaatgt
     7801 tttcaggaat aggttcaata cctactgcgc agttttgatt gaatgtctcc ataccgtctg
     7861 ctaataaata aatagattgt aatgtattat gcaaaataac aggcttaaag acgtttaatt
     7921 cgaaattccc ttgagcgctt gagaacccta ctaccgtatc gttacccatg acttgtacag
     7981 ccaccattgt taacatttca cattgtgttg ggttcacttt acctggcata atcgatgaac
     8041 ctggctcgtt ttcaggaata gaaatctcag ctaaacctgc acgagggcct gacgctaacc
     8101 atcttacatc attcgcaatc ttcattaagt cacccgcaag cgctttgagt gaaccatgta
     8161 attgaaccac ttcgtcatgt gcagttaacg catggaattt attttcagat gatacaaatg
     8221 gataacctgt attttccgca atgtatcctg caacttttgt accaaattca gggtgtgcat
     8281 taatgccagt accgactgct gtgccaccaa tagctaagtt taaaatatgc tttttagatt
     8341 ctgccaataa gttttcacac acgtctagca tatagcgcca accactaatt tcttggccta
     8401 atgtaatcgg tgtcgcatct tgaaggtgtg tacgtccaat tttaatgatg tctttaaact
     8461 cattttcttt tttatagaac gtttcacgca agcctttcaa agcaggttct aaacgttttt
     8521 ccacttcatg atacagtgca acgtgcattg ctgtcgggaa tgtgtcatta gaactttgtg
     8581 acttgttaac atcatcgttc gggtggattg tttcgtcact ccccttttct tttaagtttt
     8641 cattggccac atagctcaca acttcattca cattcatatt actttgtgta ccgcttcctg
     8701 tttgccacac aactaatgga aaatgttcat ctaattcgcc tgctaaaata cgatcacaag
     8761 catatacaat cgcatctttt ttcgcatcgc ttagctttcc taattcatta tttgccaatg
     8821 cagctgcacg ttttaattgt gcgaaaccat aaaccacctc aatcggcatt ttttctttac
     8881 cgactggaaa attttgttta cttctttgtg tttgagcgcc ccaatattta tctgcaggca
     8941 cctcaatttg accaaatgta tcatgttcaa ttcttactga catatctctc gctccccttt
     9001 gatttttcaa tattcttgtc acttaaatta tagcattaaa cgaaatcgcc attcaatgaa
     9061 cattggcgtg caattgcgtt ttttctccaa ataaaaaagg ccgagaaaat ttaatttccc
     9121 gaccttattt caacaatacg tgaaagtagc atattgaaac atcacatcca tcgcctctac
     9181 aaagtgataa ttcaatgaaa gcaatccatc atttattcat ttgaagttgt ttctttaact
     9241 tttaccgctt cagtatgcat aaatttgtgt ttcacagctt gaacgactgc aatagctgcc
     9301 aaaatataca aaactaggcc tattaccatc atgaccggac tgatttgaat gaatacacct
     9361 aaaatgccac tgaactgatt gtaaaaatca tctaaataaa tcgtcaacgc gacagttatc
     9421 gcgatacaac aaataacact aataacgatg cctttttgat tcgttttcac aaaagtttta
     9481 acgtgtgatt gtgcatcatc gactaaccca ttggataagt ttagttgaag ttgtacaatt
     9541 ttaaataata ccggtaaata taacgtccct aacgccaatg gaaaggcttt aatcgataat
     9601 aagttgatga ttgttgaaat tataattaat gtaacccatt tctgatgtaa cttcatgtat
     9661 gtcacctttc atcatttttt aacatgctcc cattttatca catttatctc gaggtacacg
     9721 aaagaaaata aaaagactgg accatctcca tggtaaacca gtcttctcat taatttttat
     9781 tttgtatctt tatcagaacg cactttggaa tcatgtgctt gattgagttt ctcttcatcg
     9841 ttcgcttcag aaatttgttc catttcttta ccgagctcca caacatcatc aaaactatca
     9901 accatttcat tatcgtaatg cttttgttcg tctttcatta tgcccttcac ctcttctctt
     9961 atgcgtacaa tgaagtaaag taattgcgca catcttcagg taaaccttgt gcagctgctt
    10021 catcaaggac aacagttacc atacgatgtg attttaatgc tgacggaata aatgtcgtat
    10081 taccgttttc ttcgtataat ttcttcactt gttctgcttt cactgcacct gtcacgacaa
    10141 caataatttc acgcgctggt aacaatgcgt cattcatagg tataccgatt tgaccttttg
    10201 tatcgattgt cacgacttgt aacgtcaatt tacctttatt atcttttgtt tttgcgtgat
    10261 gtttaataaa tgattccact ttttcatctt ctggtacgtg atgaatttgt ttttctggga
    10321 cacctaatgc ttgataatat gattgttgcg cgtcgtaatc caatacatga atttgactga
    10381 aatcaacgct atgacgatcg acatcttttt ttaatgcatc taatacaggt gcttcttctt
    10441 gatttaaatg aagacctaca atcgatgtcg gattgttatt taactgtttt cttaagatat
    10501 ctgctgtgaa agttgctgct gtttctgcat ctttaaatac tttaaaattc attgccatta
    10561 tcgtacactc ctctattgtc ctactcgtct tttacattaa t
//
LOCUS       DANHOL010000086        10517 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.086, whole genome shotgun sequence.
ACCESSION   DANHOL010000086 DANHOL010000000
VERSION     DANHOL010000086.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 10517)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10517)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10517
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.086"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            152..880
                     /locus_tag="PTC08_001572"
     CDS             152..880
                     /locus_tag="PTC08_001572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metalloprotease"
                     /protein_id="HDK5683077.1"
                     /translation="MRILAILIYLLVVLIRLNIVNTPYLDENTKSLIFIFMTLLVPTF
                     IIRPLFNKNTKNLIPLDYKELEASVELPQGTKMYTKASLLLKSVYVKSDRSKSSIVLN
                     PELIEKVDIDELRFLIYHEVCHIKNNDITKNQLFRALSYGVLPFLLVFISGFIEFKSM
                     NLFIAYIVLAVIIYLSGMLLYFLRIRRRELKCDSYASIHTSSATGIRALMTLKRLGIL
                     KDTKLVLFASHPNLDKRIQNLKNS"
     gene            complement(1128..1916)
                     /locus_tag="PTC08_001573"
     CDS             complement(1128..1916)
                     /locus_tag="PTC08_001573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family protein"
                     /protein_id="HDK5683078.1"
                     /translation="MTKELRAIVNTCREDSNLSPVSKIEIYSFFDPFDKDSFKLSAVL
                     SKLRIEYHQYIRIRHILNPSLRVLTKCQAQSTSDRDNIALAFKAAELQGRARAHRFMH
                     LIQNEIIPKRDIVTEDMIAKCIINAGLDYDVYLDDLKNGQLRESLKVDLHIAREMEVE
                     QAPSLVFFNEDIQAEGLKVEGLYPYHIYTYIINEMMGSPIEKSLPPKLCEYIQQKQLV
                     TEEELLTIYEWPEKTLQKELKKLMLQQKVRKLNYPDGEFWKSIM"
     gene            complement(1933..2304)
                     /locus_tag="PTC08_001574"
     CDS             complement(1933..2304)
                     /locus_tag="PTC08_001574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="globin"
                     /protein_id="HDK5683079.1"
                     /translation="MTQTPYEVIGQERLYQLIDHFYSLVEQDNRINHLFPGDFAETAR
                     KQKQFLTQFLGGPDLYTQEHGHPMLRMRHLPFPIDDKAKEAWLENMHTAITHAQLPHG
                     AGDYLYERLRLTANHMVNIEN"
     gene            complement(2652..3233)
                     /locus_tag="PTC08_001575"
     CDS             complement(2652..3233)
                     /locus_tag="PTC08_001575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CYTH domain-containing protein"
                     /protein_id="HDK5683080.1"
                     /translation="MAIEREIEFKQLLDADSYVSIKTQHFKGQTPFKQVNYYIDTVDF
                     QIQSQKMALRIREKADGTFELTLKVPDTVGLLEYNAQFHMQPAENMTLKPSDIDDDIR
                     EVLEQRHVQLDALKILGALTTYRLETQTDEGLLVLDHSLYLGTEDYELEFEVRDFEAG
                     QQAFNNLLAQLKLSPVVPKNKVQRFFEYQRKLQ"
     gene            3364..3711
                     /locus_tag="PTC08_001576"
     CDS             3364..3711
                     /locus_tag="PTC08_001576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011276223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683081.1"
                     /translation="MRIYVNEVKIQDNRILCYTDQPTEGLTEVGQMLADSDRHAFVYL
                     LDDGSSFSYLLFVEETWSMLHEHRDKEIVINDSLTLTKFSEELDYLLDNIKGNSNYGK
                     AFVSAVEETFELE"
     gene            3728..4366
                     /locus_tag="PTC08_001577"
     CDS             3728..4366
                     /locus_tag="PTC08_001577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP pyrophosphokinase family protein"
                     /protein_id="HDK5683082.1"
                     /translation="MNQWEIFLAPYQQAIDELKVKLKGLRKQYQVNEHNSPIEFVTGR
                     VKPISSIVDKANKRGIAFDCLREEMYDIAGLRMMCQFVDDIDIVVELLRQRKDFKVIE
                     ERDYISNTKQSGYRSYHVIIDYPIETLDGTKSILAEIQIRTLAMNFWATIEHTLRYKY
                     DGDYPPEIQTRLERAAEAAFLLDEEMSEIKEEIQEAQKYYSKKRASKHDHDD"
     gene            4378..5187
                     /locus_tag="PTC08_001578"
     CDS             4378..5187
                     /locus_tag="PTC08_001578"
                     /EC_number="2.7.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD kinase"
                     /protein_id="HDK5683083.1"
                     /translation="MRYVILSKGDPKSEALKHKMMCHMQDFNMIEDAENPEIVISVGG
                     DGTLLQAFHHYSHMLSRCAFVGIHTGHLGFYADWLPHEVEKLVIAINKAEFQVIEYPL
                     LEVIVRYNDEGYETRYLALNEATMKTENGSTLVVDIDIRGQHFERFRGDGLCVSTPSG
                     STAYNKALGGALIHPSLEAIQLTEIASINNRVFRTVGSPLVLPKHHTCHVKPVDHGTI
                     LSTVDHISVKHKNVNAVQYRVANEKVRFARFRPFPFWKRVHDSFISSGESL"
     gene            5184..6038
                     /locus_tag="PTC08_001579"
     CDS             5184..6038
                     /locus_tag="PTC08_001579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HDK5683084.1"
                     /translation="MIFKYHVTESTTLKTFLYEQQFSKKTLSAIKQDGALLVNGTART
                     VRYSLQVGDILEVHLPTELPSPYLEPYNVPLNILYEDTWLLIVAKPSHQNTAPSREHP
                     HESLVEQALAHMQKRGERGIPHIVTRLDRNTMGIVIIAKSRHMHHLMNQCDIEKYYEC
                     ICEGVLTAKGEIDQPIARASDSIINRIVSEQGKRARTIYWPLKNFKTYTWCRVKLETG
                     RTHQIRVHFQWLGAPLVGDTLYGQAHHTYQTQLLKCAEVRFVHPLTQERLTIKSEQPH
                     FEQLLTTL"
     gene            6067..7452
                     /gene="mgtE"
                     /locus_tag="PTC08_001580"
     CDS             6067..7452
                     /gene="mgtE"
                     /locus_tag="PTC08_001580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium transporter"
                     /protein_id="HDK5683085.1"
                     /translation="MVNDNEQILLDGEEMFNKALLDDFIAKGDIDGFREEFLALHSYE
                     QSEYFEISDDDVRQKMYRFLSPEEVSEFFENLEIDEEDYEALFETMNATYASQVLEQM
                     SYDNAVDILNQLSKKKIASLLMLMNREEAKEIKALLHYDEDTAGGIMTTEYISLTINT
                     PVHEALMRVKDQAPDAETIYVIFVVDEDKKLVGVISLRDLIIAENDAYIEDIMSERVI
                     SANVADDQEDVAQTMRDYDFIAMPVVDYQNHLLGIITIDDIVDVMDEEASEDYSRLAG
                     VSDIDSTDDTIFQTALKRLPWLLILTVLGMITASILGSFEETLEKVALLAAFIPIISG
                     MSGNSGTQSLAVSVRNISTGDIKEKSKIKLALRESGSGFLTGITCAVSLSLIIMLLYG
                     QPYLALIVGTSLTIAMTVGTTIGSVIPLVINRLGIDPAVASGPFITTINDIVSMLIYF
                     GLATTFMSYLT"
     gene            7463..9298
                     /locus_tag="PTC08_001581"
     CDS             7463..9298
                     /locus_tag="PTC08_001581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="monovalent cation:proton antiporter family
                     protein"
                     /protein_id="HDK5683086.1"
                     /translation="MEFVSLVVVIVAAMITPILIHRLKISFLPVVVAEILMGIIIGNS
                     FLNLVHRDEMLNILSTLGFIFLMFLSGLEIDFSAFKKDKGKKKKDEEQQSPSHFKLAL
                     SVFMLIMILSIILAYAFQWMGLIDDVLLMVIIISTISLGVVVPTLKEMNLMSTTIGQL
                     ILLVAVLADLATMLLLTVYGAIHASGGGTIWLIGILVVFTIVFYFLGGLFKKAPFLEK
                     LMAGTTQIGIRAVFALIILLVALAEGVGAEHILGAFLAGVVVSLLGPTQDLVEKLDSF
                     GYGFFIPIFFIMVGVDLDIPSLISDPKVLLIIPVLIIAFIISKLIPVMLLKKWFDMKT
                     TIASAFLLTSTLSLVIAAAKIAEKLGTISEEISGILILSAVITCVFVPIVFKKLIPIP
                     DEMQRSIKVAMIGKNQLSIPIAQGLRSQLYEISLYYRKDLSDHRVLSDDITMIEITDY
                     HSDILERLGLYDSDIVVCSTNDDEINRRVALMAKAHGVERVICRLETNDESQELSSQG
                     IELFSNFQSNQILLKGMIETPNMLNLLSNVETSLYEIGMYNYAFDNMQLRHFPFGGDI
                     IFVRIIRNNESIVPHGDTQLQYGDRLIVTGTKEYVDQLKIELEMF"
     gene            9445..10215
                     /gene="fabI"
                     /locus_tag="PTC08_001582"
     CDS             9445..10215
                     /gene="fabI"
                     /locus_tag="PTC08_001582"
                     /EC_number="1.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase FabI"
                     /protein_id="HDK5683087.1"
                     /translation="MMNLEGKTFVIMGIANKRSIGFGVAKVLDQLGAKLVFTYRKERS
                     FNELDKLIDQLNQSEKHVYQIDVQSDEEVVNGFEKIGQAVGKIDGVFHSIAFARVEEL
                     RGRFSDTSRDGFLLAQDISAYSLTIVAREARKIMNEAGSIVTSSYIGGEFAVPNYNVM
                     GVAKASLEASVKYLAADLGQDNIRVNSISAGPIRTLSARGVGGFTSILKEIEERAPLR
                     RNVDQEEVGKTAAYLLSDFSSGVTGENIHVDAGYHAIR"
BASE COUNT         3284 a         1775 c         2142 g         3316 t
ORIGIN      
        1 caatagagtt gactaatgaa ttaacggaga atcgtttttt taatagagaa tttatagaga
       61 ctgtatcaaa ccattagaac aatgcttgtc attaaagcat cgatgatagc aacagacata
      121 acgtcacttt tgctttgagg aggtcgttgg tatgcggatt ttggcaattt taatatatct
      181 tttagtggta ctcataaggt tgaacatcgt aaatacgccc tatctagatg agaatacaaa
      241 aagtcttatt ttcatattca tgacgttgtt agtgccgacg tttattatta ggccgctttt
      301 taataagaat actaaaaacc taataccttt agactataag gaactggaag cgtctgtaga
      361 attacctcaa ggaacgaaaa tgtatacgaa agcatcacta cttcttaaaa gtgtatatgt
      421 taaaagtgac cgttctaaaa gtagtattgt actaaatcct gaattaattg aaaaagtcga
      481 tattgatgaa ttaaggtttc ttatatatca cgaggtgtgc catattaaaa ataatgacat
      541 cactaaaaac caattatttc gtgcattgag ttatggtgtt ttaccttttt tacttgtttt
      601 catttctggg ttcatagaat ttaaatctat gaatctcttt atcgcttata ttgtattggc
      661 agtcatcatc tatttgagtg gtatgctctt atattttctt cgcatcagac gtagagaatt
      721 aaagtgtgac agctatgcaa gcatccatac aagcagtgca accggtattc gtgcattgat
      781 gacattaaaa agattaggga ttttaaagga tacaaaatta gttttgtttg cgagccaccc
      841 caatttagat aagagaatac aaaatcttaa aaatagctga aatacgaatt gaaatcaaaa
      901 aaacaatagc tcataaaatg taaaaacgcc tcggatctgt gtagcaacta tcatttcata
      961 gattcgaggc tttattgatg ttgtctcgta ggtggttcca aggataattt taaaatgaat
     1021 gacatacgga aaatataaaa gagagggcgc ttaaaataaa acatagtgct cataattttt
     1081 aattgacact aaagtaaaaa gaggctcccc acaaacgaga cacctcttta cattatcgac
     1141 ttccagaatt caccgtctgg ataattcaat tttcttactt tctgttgcaa cattaatttc
     1201 tttaactctt tttgcaacgt tttttccggc cattcataaa tagtgagtaa ctcttcctca
     1261 gtcaccagtt gcttttgttg aatatactcg cataattttg gtggtaagct tttttctata
     1321 ggtgatccca tcatttcgtt aatgatatac gtataaatat ggtacggata aagcccttcc
     1381 acttttagcc cttcagcttg aatatcctca ttaaaaaaaa ctaaagaagg ggcttgttcg
     1441 acttccattt ctcgtgcgat atggaggtcg actttcaaac tctcacgcaa ttgtccattt
     1501 tttaaatcgt caaggtaaac atcataatcc agcccagcat taataataca ttttgcaatc
     1561 atgtcttctg ttacaatatc gcgtttcggt ataatttcat tttgaatgag atgcataaaa
     1621 cgatgcgcac gtgcacgacc ttggagctct gctgctttaa aggcgagtgc aatattgtct
     1681 cgatctgatg tactttgtgc ctgacatttc gtgagtaccc gcaatgatgg gtttaaaata
     1741 tgacgaatac ggatatattg atgatattca attcttaact ttgacaaaac ggccgatagc
     1801 ttaaaactgt ctttgtcaaa tggatcaaaa aaagaataga tttcgatctt actgacaggt
     1861 gaaagatttg aatcttcacg acaagtattt acaatagctc tcaattcttt cgtcatgtaa
     1921 tttcacctac aattaatttt ctatattgac catgtgattt gctgttaaac gtaatctttc
     1981 gtacaaataa tcgcccgcac catgaggaag ttgggcgtgc gtgatggcag tatgcatatt
     2041 ttcaagccaa gcctctttcg ctttgtcatc gataggaaaa ggcaaatggc gcattcttaa
     2101 catcgggtgg ccatgctctt gggtatataa gtcaggtcct cctaaaaatt gcgttaaaaa
     2161 ctgtttttgt ttacgtgctg tttctgcaaa atcacctgga aacaaatgat taatacgatt
     2221 atcctgttct acaaggctat agaagtgatc aatcagctga tagagccttt cttgtccaat
     2281 cacttcataa ggcgtttgtg tcatttatat caccgctcat atgacttatt atatataaat
     2341 cataacatga atttttacat ttcaaagcaa aaacacttac atacaagatg tttcgtgttt
     2401 gtagctgtac tgaataggat ttttggacaa attgaaggta caagatgaca atttttaaac
     2461 gtacaaaaat taccacctac tttgaactca acgtcattca atagattgaa attaagctaa
     2521 gtcatattgc ttaacatcgt acatcacttt atcttcatcg ttcactttca aatgttattt
     2581 ttattatttt acagtttatg aaataagaga taaagaaaaa cgcataattt gctataaagc
     2641 ttttaagttt tttattgaag tttgcgttga tattcgaaaa aacgttgcac tttatttttc
     2701 gggacaacgg gtgataattt cagctgcgcc aataaattgt taaaagcttg ttgaccggct
     2761 tcgaaatcac gtacttcaaa ctcaagttca taatcttcag tgcctaagta aagactatgg
     2821 tcaagtacga gtaacccttc gtctgtctgt gtttctaatc gatacgtcgt taaagcacct
     2881 aaaattttta gtgcatctaa ttgaacgtgg cgctgttcaa gaacttcacg tatgtcgtca
     2941 tcgatatcag aaggtttaag tgtcatattt tctgctggtt gcatgtggaa ttgcgcatta
     3001 tattctaaca gaccaactgt gtcagggact tttaatgtca gttcaaaagt accgtcagcc
     3061 ttttcacgaa tacgcaatgc cattttttga gattgtattt gaaaatcaac cgtatcgata
     3121 tagtaattga cttgtttaaa aggggtctga cctttgaaat gttgtgtttt gatagataca
     3181 taactgtctg cgtccaataa ttgtttaaat tctatttcac gttcgattgc caatgaaatc
     3241 actccttatg ccatattatg ccgaattgaa acttgattga aaagtattta gaatagggta
     3301 gagttcacca atgagagtgc gcgtgaattg tgttaaaatg ttaggtgatg aggaggaaag
     3361 tatatgcgta tttatgtcaa cgaagtaaaa attcaagata accgtatttt atgctatacg
     3421 gatcaaccta cagaaggtct aacagaagtc gggcaaatgc tcgccgatag tgaccgtcat
     3481 gcttttgttt atttattaga cgatggctct tcattctcat acttattgtt tgtagaagaa
     3541 acttggtcaa tgcttcacga acatcgagat aaagagatag tcattaatga ttccttaacg
     3601 ctcacaaagt tttctgagga attagattac ctgctcgata atattaaagg taattcaaac
     3661 tatgggaaag catttgtgtc tgctgttgaa gaaacatttg aactcgaatg aagcggagtg
     3721 aggtaagatg aaccaatggg aaatttttct agcaccctat caacaagcta tagatgaatt
     3781 aaaagtgaaa ttaaaaggtt tgcgcaaaca atatcaagtg aatgaacata attcaccgat
     3841 tgaatttgtc acgggtcgcg tcaaaccgat ttcgagtatt gttgataagg cgaataaaag
     3901 gggtattgca ttcgattgtc tgcgtgaaga gatgtatgat attgcgggac ttcgaatgat
     3961 gtgtcaattt gtggatgata ttgatattgt cgtcgagcta ttgcgtcaac gaaaagattt
     4021 caaagtgatt gaagagcgcg actacattag caatacgaaa caaagtggtt accgttcata
     4081 ccatgtgatt atcgattatc ctattgaaac attagatgga acgaaatcga tactcgcgga
     4141 aattcaaatt cggacactcg caatgaactt ttgggcgacg attgaacata cattgcgtta
     4201 taaatatgat ggagactatc caccagaaat tcaaacgaga ctcgaacgtg ccgctgaagc
     4261 cgcttttctt ttagatgaag aaatgtctga aatcaaagaa gaaattcaag aggcacaaaa
     4321 gtactattct aaaaagcgtg ccagcaagca tgatcatgat gattgaggtg tgtataaatg
     4381 cgttacgtta ttttatctaa gggagatcct aaatcagaag cattgaagca taaaatgatg
     4441 tgtcacatgc aagactttaa tatgatagag gatgctgaaa accctgaaat tgttatttct
     4501 gtcggtggtg atggcacttt acttcaagca ttccaccatt atagccatat gttgtcacgt
     4561 tgcgcatttg tcgggataca tacagggcat ctcggttttt atgcagattg gctccctcat
     4621 gaagttgaaa agttggtcat cgcgattaat aaagctgagt ttcaagtgat tgaataccct
     4681 ttgttagagg tgattgtccg ttataatgat gaagggtatg aaacacgtta tcttgcatta
     4741 aatgaagcaa ctatgaaaac tgaaaatggc agtacgctag tcgtagatat tgatatacgt
     4801 ggtcaacatt ttgaacgttt tagaggcgac gggttgtgtg tttctacgcc atcaggttcg
     4861 acggcctata acaaagcgtt aggtggggcg ctcattcatc cgtcattaga agcgattcag
     4921 ttgactgaga ttgcgtcgat taataataga gtattccgta cagtcggatc accgctcgta
     4981 ttgcctaaac accatacatg tcatgtcaaa ccggttgatc acggtacgat tttgtcaact
     5041 gtcgatcata ttagcgtcaa acataaaaat gtgaacgctg tccaataccg cgtcgccaat
     5101 gaaaaagtac gatttgcacg ttttagacct ttcccatttt ggaaacgtgt gcatgattcg
     5161 ttcatttcta gtggtgaatc attgtgattt ttaaatatca tgtgacggaa tcgacaacgt
     5221 taaaaacatt tttatatgaa caacaatttt caaaaaagac gttgagcgcc attaaacaag
     5281 atggcgctct ccttgttaat ggcacggcac gtactgtacg ctattctttg caagtcggtg
     5341 atatattgga agtccatttg ccgacagagc taccgagccc gtatcttgaa ccttacaatg
     5401 tgcctttaaa tattttatat gaggatacgt ggttgttgat tgtggccaag ccgagccatc
     5461 aaaacacagc accttcacgt gagcatccac atgaaagttt ggtggagcaa gcactagctc
     5521 atatgcaaaa gcgtggtgaa cgcgggattc cgcatattgt cacacggctg gatcgcaata
     5581 cgatgggcat cgtcattatc gcaaaatcac gtcatatgca tcatctcatg aatcaatgcg
     5641 acatagagaa gtattatgaa tgtatttgtg aaggtgtttt gacagcaaaa ggcgagattg
     5701 atcaaccgat tgcaagagcg tcagatagta ttattaatcg aattgtctcg gaacagggga
     5761 aacgagcgcg aaccatttat tggccactta aaaatttcaa gacttataca tggtgccgtg
     5821 ttaaacttga aacgggtaga acacatcaga ttcgtgtgca ctttcaatgg ttaggggcgc
     5881 cattagtggg cgatacatta tatggacagg cacatcatac gtatcaaacc caattattaa
     5941 aatgtgcgga ggtcaggttt gtccatccat tgactcagga acgactgaca atcaagagtg
     6001 aacagcctca cttcgaacaa ttattaacca ctttgtagat ttacaggaac gatggaggtg
     6061 gcaaacgtgg tgaacgacaa tgaacaaata ttgttagatg gcgaagaaat gttcaacaaa
     6121 gctttgttag atgatttcat cgcgaaaggg gatattgacg gctttcgtga agagttttta
     6181 gcattgcact catatgaaca aagtgaatat ttcgaaataa gtgacgatga tgtccgtcaa
     6241 aaaatgtatc gatttttatc tccagaagaa gtttcggagt tctttgagaa tttagagatt
     6301 gatgaggaag attacgaagc attatttgaa acgatgaatg cgacttatgc gagtcaagtg
     6361 ctcgagcaga tgtcttacga taatgcggtc gatattttaa accagctttc caaaaagaaa
     6421 atcgcgagtt tattaatgtt gatgaaccgc gaagaagcaa aagaaattaa agcattactc
     6481 cactatgacg aagatacagc cggcggtatc atgacgacgg agtatatttc actcacgatt
     6541 aatacaccag tacatgaagc gttaatgcgt gtgaaagatc aagcgccaga cgccgaaacg
     6601 atttatgtga ttttcgtcgt ggatgaagat aaaaaactag ttggggttat ctcattaagg
     6661 gatttaatta ttgccgaaaa tgatgcgtac attgaagata ttatgagtga acgtgtcatt
     6721 agtgccaatg tcgctgatga ccaagaagat gttgcgcaaa caatgagaga ctatgacttt
     6781 atcgcgatgc cggttgtaga ttaccaaaat catctgttag ggattattac gattgacgat
     6841 atcgtcgacg ttatggatga agaggcgagc gaagactact cacgtttagc cggggtatcg
     6901 gatatcgatt caactgatga tacgatattt caaaccgctt taaaacgttt gccgtggtta
     6961 ctcattttga ctgtattagg tatgattacg gcatccattt taggctcatt tgaagaaacg
     7021 ttagaaaaag tggcactatt agctgcattt attccaatta ttagtgggat gtccggaaat
     7081 tcaggcaccc agtcgcttgc cgtgtctgtc cgcaacattt caacaggtga tattaaagaa
     7141 aaaagtaaga ttaaacttgc attacgtgaa tcaggcagtg gctttttgac agggattaca
     7201 tgtgcggtaa gtttgagttt gattattatg ttgttgtacg gccagcctta ccttgcattg
     7261 attgtaggga caagtctgac catcgcaatg acagtaggga caacgattgg ttctgtgatt
     7321 ccacttgtga ttaatcgttt aggtattgac cctgctgttg cgagtggtcc gtttattaca
     7381 acgattaatg atattgtcag tatgttgatt tatttcggat tagctacgac ttttatgtca
     7441 tatttaactt gagggggtac ccatggaatt tgtatcgcta gtcgtcgtca tagtagctgc
     7501 tatgattaca ccgattttga ttcataggtt gaaaatatcg tttttacctg ttgtggtcgc
     7561 cgaaatttta atggggatca tcatcggaaa ttcgttttta aacctcgtac atcgtgacga
     7621 aatgttaaat attctgtcga cgttaggctt tatcttttta atgtttttaa gtggcttgga
     7681 aattgacttt tcagcattta aaaaggataa aggtaaaaag aaaaaagatg aggaacaaca
     7741 aagtccaagt cattttaaac tcgcattgag tgtgtttatg ctgattatga ttttgtctat
     7801 tatacttgca tacgcatttc aatggatggg cttaattgat gatgtgctgt taatggtgat
     7861 tatcatttca acgatttcat taggtgtagt tgtgccgaca ttgaaagaaa tgaacttaat
     7921 gagtacgacg attggccaat taattttgtt agttgcggta ttagccgacc ttgcaacgat
     7981 gctgttactc actgtctatg gtgcgataca tgcatcaggg ggtggcacga tttggctgat
     8041 cggtatttta gttgtcttta caattgtgtt ctatttctta ggtggcttat tcaaaaaagc
     8101 accattttta gaaaagttaa tggctggaac gacacaaatt gggattcggg ctgtattcgc
     8161 acttattatt ttacttgttg cgttagctga aggtgtcggt gcggaacata ttttaggtgc
     8221 ctttttagcc ggtgtggtcg tgtcattact cggaccaacg caagatttag ttgaaaaact
     8281 cgactcattt ggatatggct tcttcatccc gatattcttt attatggtcg gtgtagattt
     8341 ggacattcca tcgttaatta gcgaccctaa agtattactc attattccag tgctcattat
     8401 tgcgtttatt atttctaaat taatccctgt catgctgctg aaaaaatggt ttgatatgaa
     8461 gacaacgatt gcgtctgcat ttttattaac atcgacacta tcactggtca ttgcagcggc
     8521 caaaatcgct gaaaaacttg gcacgatcag tgaagaaatc tcaggtattt taattttgag
     8581 tgcggtcatt acatgtgtct ttgtgccgat tgtctttaag aaattaattc cgattcctga
     8641 tgaaatgcaa cgttccatta aagtagctat gattggaaaa aaccaattgt cgattccgat
     8701 tgcacaggga ttgcgttcac agttatacga aatttcattg tactatcgaa aggacttatc
     8761 agatcatcgc gtactgtcag atgatattac gatgattgaa attacagact accattcaga
     8821 tatattggaa cggttaggtt tgtatgatag tgacattgtc gtatgttcaa ctaacgatga
     8881 tgaaattaac cgtcgtgttg cattaatggc taaagcacac ggtgtagaac gcgtgatttg
     8941 ccgtctcgaa acgaatgacg aatctcagga actgagcagc caaggtatcg aattgttcag
     9001 taatttccaa agtaaccaaa ttttattaaa agggatgatt gagacaccaa acatgctgaa
     9061 cttattaagc aacgtcgaaa catcattgta cgaaattggg atgtacaatt acgctttcga
     9121 caatatgcag ctccgtcatt tcccatttgg cggcgatatt atctttgtcc gtattattcg
     9181 aaacaatgaa tcaatcgtgc ctcacgggga tacacaactc caatatggtg accgtttgat
     9241 tgtgacagga acgaaagaat acgtcgatca attgaaaata gaattagaaa tgttttaact
     9301 gaactcagac acagttttga aatatggatg ttaactattt caaggctgtg ttgctttctt
     9361 caaaagggaa atacttttca aaatttagta ccagatgtta atattaatat aatcatgtca
     9421 ttaaacgtaa aggagtaatc tacagtgatg aatcttgaag gtaaaacttt tgtaattatg
     9481 ggtattgcaa acaagcgtag tattggtttc ggtgtagcaa aagtattaga ccaattaggc
     9541 gcaaaattag tgtttacata cagaaaagaa agaagtttta atgaattaga taagcttatc
     9601 gatcaactta atcaatctga aaagcatgta tatcaaatcg atgtacaaag tgatgaagag
     9661 gttgtcaatg gcttcgaaaa aattggtcaa gcagttggca aaattgatgg tgtattccat
     9721 tctattgcat ttgcacgtgt tgaagaacta agaggtcgtt tctcagatac atcacgtgac
     9781 ggttttttac ttgcgcaaga catcagtgcg tattcattaa cgattgttgc acgtgaagct
     9841 cgtaaaatta tgaatgaagc ggggagtatc gtgacatcat catacattgg tggcgaattt
     9901 gcagtaccga actacaatgt gatgggtgta gcaaaagcaa gtcttgaagc atctgtgaaa
     9961 tatttagcag cagacttagg tcaagataac attcgtgtga attcgatttc tgcaggaccc
    10021 atccgtacat taagtgcacg aggcgttggg ggcttcacga gcatcttaaa agaaattgaa
    10081 gaacgcgcgc cattaagacg taatgtcgat caagaagaag taggtaaaac agcagcgtac
    10141 ttactaagtg atttctcttc tggcgttaca ggggaaaata ttcatgttga cgcaggttac
    10201 cacgcgattc gataaaacca gtaaaacacg tacaccctaa gttcgattta taacgaactt
    10261 agggtgtacg tgttttattc cattctgaaa atgattgaat taaattggta gctatatcaa
    10321 tttttttgag ctttctcaag acaactgata cttatacatt ttaatttcca agtttagtgt
    10381 aatggctttt tcctcactat gaaatagagc aaaaattact gacaatccaa aaaaattaaa
    10441 ctgaaataat ttttcaatac tatggcgcta ttttaaaata atccatccta tatgtagaat
    10501 tatttataca taaatac
//
LOCUS       DANHOL010000087        10391 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.087, whole genome shotgun sequence.
ACCESSION   DANHOL010000087 DANHOL010000000
VERSION     DANHOL010000087.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 10391)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10391)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10391
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.087"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            <1..135
                     /locus_tag="PTC08_001583"
     CDS             <1..135
                     /locus_tag="PTC08_001583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000669716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MAP domain-containing protein"
                     /protein_id="HDK5683088.1"
                     /translation="AKYTVTWNNGKKQTINLKSHAQLPGNQISGKDIKNIDIEVVSAK
                     "
     gene            481..1068
                     /locus_tag="PTC08_001584"
     CDS             481..1068
                     /locus_tag="PTC08_001584"
                     /inference="COORDINATES: protein motif:HMM:NF016988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage portal protein"
                     /protein_id="HDK5683089.1"
                     /translation="MRKSRIILAKTKADASGRMGNANVDFIYKQYDVAGVEAYKKRIQ
                     KDIHKFTNTPDLSDENFGGVQSGEAMKYKLFGLEQLRSTIERQLTKGFKRRFAIIQSV
                     RNQLNDPIDLTHMRIEYKPNIPQSLSEYADIFIKLGGRVSQETLLSWLPNIENPKEEL
                     EKVKAEEQEASENHDYHDAMPLQQEKADMNDVELE"
     gene            1052..2407
                     /locus_tag="PTC08_001585"
     CDS             1052..2407
                     /locus_tag="PTC08_001585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="minor capsid protein"
                     /protein_id="HDK5683090.1"
                     /translation="MSNLSDYWLERAQQAIQSETLEDAAKVAEIERIVAMMIADIYKN
                     LLAYYGKLATAEGIDWREAKQIADKFDVEAFQMQAKAYVENKDFSDEANKELKRYNTA
                     MYVNRDQLLKHELGLIVTKGYAEQENVINKHLHDSVTRTLRHQAGILGADVHVKQTDV
                     EAIVYSNFGKLNWSERLWNNQDELRKDVERMASHVMLRGRHPYEFVPEIRKKQQQTVA
                     NTKRLLITEAARVQTEAQKLHYLETIGKDAEYEFVAKRDEKTSKICRHYDKKVFKVKD
                     MVPGVNAPPMHPHCRSTTVPHVGNWRDKFFKDRQGKYRLRGDEETKQLLAKKEMTDAI
                     DSGKIKVELNVEKQNRHQLGHQLYEDYKKKNIQKGLPIPSYTILDNSELNSLVLQKAS
                     KGHLTTDTNGNWDNKEIINFDKIIGKAYIDGKFIATRWGKVHYSKTGTHIVPRLKEDK
                     Q"
     gene            2404..2598
                     /locus_tag="PTC08_001586"
     CDS             2404..2598
                     /locus_tag="PTC08_001586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LSM domain protein"
                     /protein_id="HDK5683091.1"
                     /translation="MKLWTYVGKNVLIELKNGQQFVGKADDYDDEIANNRGEESIYLD
                     DGIQIYDIYKSQIKSIEVLD"
     gene            2782..3366
                     /locus_tag="PTC08_001587"
     CDS             2782..3366
                     /locus_tag="PTC08_001587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4355 domain-containing protein"
                     /protein_id="HDK5683092.1"
                     /translation="MKEQWLKLSLQFFNDAGTEENTETDNTVENSDSTEETNDTEQLT
                     EAQLKLVNERVNEEMARRTKEMRQQIQDELNEKQKEADKLRKMNAEQKHQYELEKAEK
                     ERDDYKQQLESYKMRQEAMTMFSEAGMQAPESLLNMVVQDTAEATKEAVDSFVSMVNQ
                     EVQRQLESKATQNHVAGNHVEAPKTDEAWKTFLN"
     gene            3381..3632
                     /locus_tag="PTC08_001588"
     CDS             3381..3632
                     /locus_tag="PTC08_001588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683093.1"
                     /translation="MMKFNLKFNLQFFADDTASGGGTSSPTEAAKTKVALGETKLKDK
                     HTGIVKTVTDAKSYVTPALITDDAIYMEGRFVSHLMIHF"
     gene            complement(3685..4287)
                     /gene="rpsD"
                     /locus_tag="PTC08_001589"
     CDS             complement(3685..4287)
                     /gene="rpsD"
                     /locus_tag="PTC08_001589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="HDK5683094.1"
                     /translation="MARFRGSSWKKSRRLGISLSGTGKELDKRPYAPGQHGPTQRKKL
                     SEYGLQLREKQKLRYLYGMTERQFRNTFQTAGKQGGVHGENFMILLASRLDAIVYALG
                     LARTRRQARQLVGHGHVEVDGKRVDIPSYTLKPGQVVTVREKSRKLAIIEESVEINNF
                     VPDYLDFDADNLTGTFVRLPERSELPAEINEQLIVEYYSR"
     gene            complement(4522..4977)
                     /locus_tag="PTC08_001590"
     CDS             complement(4522..4977)
                     /locus_tag="PTC08_001590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HDK5683095.1"
                     /translation="MTETTDYHLLSRQLDAMLDGETDLIANLSNASALLNENLSQINW
                     VGFYLMKDEALILGPFQGKPACVHIEVGKGVCGTAVAKNQTQRVADVHAFPGHIACDA
                     NSQSEIVIPIHKGGEVIGVLDIDAPIPARFSEADEAGLEDVVKVLETHL"
     gene            5160..6860
                     /gene="ezrA"
                     /locus_tag="PTC08_001591"
     CDS             5160..6860
                     /gene="ezrA"
                     /locus_tag="PTC08_001591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009381937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septation ring formation regulator EzrA"
                     /protein_id="HDK5683096.1"
                     /translation="MALYIILAIIIVILIAIGVLFYMRSNKRSIIQSAEERREKLNAL
                     SYDESLEKLKTLHLSGETKNQYDTLNQSWTDTTNNYLAPVDEKIHEAEMNLDKFKFSL
                     AQTDIDDAHALMDQYEAKHQELISQADEVYDMHQQSDEIYERSKNEYRKLKRDVLANR
                     HQYGESASLLEKEIEGFEPEFEVYETLKAEGNYQEAHTHIQGLDQDIAYLKEDMSEIP
                     DLMREAQKELPGQFQDIKYGVRDLKVEGYDLDHVKVDSTLQDLKTELSFVEPMISRLE
                     LDEANDKLAQINDRLDDMYDLIEHEVKSKNAVEESKERITNDLFHAKDMNYTLQTEIE
                     YVRENYYINESDVQSVRQFENEIQNLISVYDEILSEMAKSSVRYSEVQDNLKYIEDHV
                     EVINTKQEKLQNHLVSLREDEAEAEEHILRVQSKKEEIYRRLLASNLTSVPERFIILK
                     NEIDYEVRDVNKRFSERPINVQQLKDKVNKVVLQMNKFEDEANDVLINAVYAERLIQY
                     GNRYRKDNHDLDKSLNEAERLFKNNRYKRSSEISEQALEQLEPGIAQHIEREVLEQQS
                     "
     gene            7085..8221
                     /locus_tag="PTC08_001592"
     CDS             7085..8221
                     /locus_tag="PTC08_001592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase"
                     /protein_id="HDK5683097.1"
                     /translation="MLYFDNAATTKPDPSVLSSFMKVNEKFFYNPNSPHQKGQEVERL
                     LQNARDQIKSTLKLNDETLIFTSGATESNNMALKGAAHQKKHFGRTIITSLLEHPSVL
                     EVMRELEREGFILKYVNVTTEGRIDIDDLKSLLTNDVILVTCMQVNNIMGQMQPIEEI
                     VESLKPYPKVHFHVDAVQALGKWPIQMTGIDSLSLSGHKFNGLKGQGLLILKNLHQIY
                     PIIQGGGQEFGLRSGTVNVASDVALAKAIRLAEDQRESLIQTLSTFTTALREMIQDYP
                     GVVINSPVDASPHILNLAFPGVRGEVLVNAFSKQGIMISTTSACSSKHSNVNEVLKAM
                     NISVSRILGSIRLSFDRHTTMQDIETFKVAFHQVYREVEELLEK"
     gene            8218..9438
                     /gene="thiI"
                     /locus_tag="PTC08_001593"
     CDS             8218..9438
                     /gene="thiI"
                     /locus_tag="PTC08_001593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 4-thiouridine(8) synthase ThiI"
                     /protein_id="HDK5683098.1"
                     /translation="MIYDHILVRYGELTLKGGNRKTFVSQLRSNVKRALMPLKGYEVK
                     ANRDRMYIQLEPEADIEEMMTRISKVFGVHSISPVLKLEKSMDAVYEHARLFAQNYEA
                     GDSFKIEVKRSDKKFEYETFAIQRMVGGEVLKSNTSLHVDVRQPDHEIKVEVRLDAIY
                     MYDRIIPAIGGLPVGTGGKTLLMLSGGIDSPVAGMEVMRRGVTIEAIHFHSPPFTSEK
                     AKEKVIELTRIMAERVGSIRLHIVPFTEVQKQIHKVVHERYTMTSTRRMMLRIADKVV
                     YQIGADAIVNGENLGQVASQTLKSMYAINAVTNTPILRPLLSLDKEEIVLKAKDIGTF
                     ETSIQPYEDCCTIFTPKNPVTEPQFEKVLQYESGFDFEEMIDRAVGNIETIVIDKNYQ
                     THQDEQNTWDDDLF"
     gene            9454..10227
                     /locus_tag="PTC08_001594"
     CDS             9454..10227
                     /locus_tag="PTC08_001594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TSUP family transporter"
                     /protein_id="HDK5683099.1"
                     /translation="MILEWDGTLILIIISLGFLAAFIDAVVGGGGLISIPALLAIGMP
                     PAVALGTNKLASAFGSLTSAIRFIRSGKVDLAIVAKLFPLSFITSILGAIVAVYLPAE
                     LLKPIVIAILSMVLVYTLLKKDWGSIRTYTTLPLYKMILFTCLIVVIGFYDGFLGGGT
                     GSFLLFVFLLLGFDFLSAAGNAKVLNFASNLGALLLFIYLGRVDYVYGLSMGVSMIAG
                     SYVGAIFALKKGVSYVRILFVIVTVVLILKNVWDYISTH"
BASE COUNT         3545 a         1643 c         2242 g         2961 t
ORIGIN      
        1 gcaaaatata cagtgacttg gaataatggt aagaaacaaa caattaattt aaaatcacat
       61 gcacaattac ctggtaatca aattagtggt aaagacatta agaatattga tattgaagtg
      121 gtaagtgcga aataattata attcaattat agtcccataa tgctatgaaa aagctaaagg
      181 aatttgacat ttaaattgtc atttttcttt agctttttgt ttatcctgct ccatttcata
      241 gtatatagct ataaataaga gcaagtgtag ttcacaccat gcaatgacat aaaacttgca
      301 agagtagatt taaatgaggt gcgaaatatg aaagaacaat ggttaaagtt aagcttacaa
      361 ttttttaatg atgcaggaac tgaggaaaat acggaaacag ataacactgg agaaaataat
      421 aattagactg aaaaaataaa gacagggcat ttggacttag atgttgaaga agtgaaaaag
      481 atgcgtaagt cccgtatcat cctcgctaag acaaaagcgg atgcatcagg gcgtatgggt
      541 aatgcgaatg tggattttat ttacaagcaa tatgatgttg cgggtgttga agcgtataag
      601 aagcgtattc aaaaagacat ccacaagttt acgaatacgc ctgatttatc agatgagaac
      661 tttggcggtg tgcagtcagg tgaggcgatg aaatataagt tattcgggct tgaacagtta
      721 cgctcaacaa ttgaaaggca gttgacgaaa ggttttaaac gtcgatttgc gattattcag
      781 agtgtgagaa atcaactgaa cgacccgatt gatttgacgc atatgcgtat cgaatataag
      841 ccgaacatcc cgcaatcgct atcagaatac gcggacatct ttattaaact tggtggccgt
      901 gtcagtcaag agacgttgtt atcgtggtta ccgaatattg agaacccgaa agaagaactt
      961 gaaaaagtga aagcggagga acaagaggcc tcagaaaatc acgactacca cgacgccatg
     1021 ccattgcagc aagagaaagc ggatatgaac gatgtcgaac ttgagtgatt actggttaga
     1081 gcgtgctcaa caagcgattc aatctgagac tttggaagat gctgcgaaag tggctgaaat
     1141 tgagcgtatc gttgcgatga tgattgcgga catctacaaa aacttgttgg cctattatgg
     1201 gaaattggcg acagctgagg ggattgattg gcgagaagca aagcaaatcg cggataagtt
     1261 tgatgttgaa gcgttccaaa tgcaagctaa ggcctatgta gagaataaag attttagtga
     1321 tgaggcgaat aaagagctta aacgctacaa tacagcgatg tatgtaaacc gtgatcagtt
     1381 attaaagcat gagctcggtt tgattgtcac aaaaggctat gcagaacaag agaacgtgat
     1441 taacaaacat ctccatgata gtgtgacacg tacattgaga catcaagcgg gcatattagg
     1501 tgctgatgtg catgtaaagc agacagatgt tgaagcaatt gtgtattcta actttggcaa
     1561 gctgaattgg tctgagcgac tttggaacaa tcaagatgaa ctcagaaaag atgttgagcg
     1621 gatggcaagc catgtgatgt tgcggggacg tcatccatat gagtttgtgc cagagatacg
     1681 caagaagcaa caacagacag tggctaatac gaaacgatta ttgattaccg aagctgcacg
     1741 cgttcaaaca gaagcgcaga aattgcacta tttagagacg ataggaaaag atgctgaata
     1801 tgagtttgtg gccaaacgtg atgaaaagac gtctaaaatc tgtcgtcatt atgataaaaa
     1861 agtgtttaaa gtgaaagaca tggtgcctgg tgtcaatgcc ccgccgatgc atccccattg
     1921 tcgaagtacg acagtgccac atgtaggtaa ctggcgtgac aagttcttca aagacagaca
     1981 agggaaatat cgattaaggg gtgacgagga aacgaagcaa cttttagcta aaaaggaaat
     2041 gacggatgcc attgatagtg gtaaaataaa agttgaattg aacgttgaaa agcagaatcg
     2101 acaccaatta ggtcatcaat tgtatgaaga ttataagaaa aaaaatatac aaaaagggct
     2161 tccaataccg agttatacaa tattggacaa tagtgaattg aattcacttg tactacaaaa
     2221 agctagtaaa ggtcatttga caactgatac taatgggaat tgggataaca aagaaattat
     2281 taacttcgat aaaattatcg gtaaagcata cattgatggt aaatttatcg caacgagatg
     2341 gggaaaggtg cactactcaa aaaccggaac ccatattgta ccaagattga aggaggataa
     2401 acaatgaaac tatggacata tgtggggaaa aatgtattga tagaattgaa gaatggtcaa
     2461 caatttgttg gtaaagctga tgattatgac gatgaaatag ctaataatag gggagaagaa
     2521 tctatatatt tagatgacgg aatacaaata tacgacatat ataaaagtca aattaaatcg
     2581 attgaagttt tagattaagc accggatgaa gtggtaaatc attcatctcg gtgctctttt
     2641 tatacccaat tttaagctac tgtattgcag tggctttttt tattgcccaa accgtgctta
     2701 tggcgttaaa agatgcaagt gtagtccaaa ccatgcaatg acataaaact tgcaagagta
     2761 gatttaaatg aggtgcgaaa tatgaaagaa caatggttaa agttaagctt acaatttttt
     2821 aatgatgcag gtactgagga aaatacggaa acggataata ctgtagaaaa tagtgattcg
     2881 actgaggaaa cgaatgatac ggaacagtta actgaagcgc aacttaagtt agtgaatgag
     2941 cgtgtgaatg aagaaatggc acgtcgtacg aaagagatgc gtcaacagat tcaagatgaa
     3001 ttgaatgaaa agcaaaaaga agctgataaa ttacgtaaga tgaatgccga acaaaagcat
     3061 caatacgagc ttgaaaaggc tgaaaaagaa cgtgatgact ataaacaaca actggagtca
     3121 tacaagatgc gtcaagaggc aatgacgatg ttcagtgagg caggcatgca agcccctgaa
     3181 tctttattaa atatggtcgt tcaggataca gcagaagcaa caaaagaagc tgtagatagc
     3241 tttgtttcga tggtcaatca ggaagtgcag cgtcaattag aaagtaaagc gacacaaaac
     3301 cacgttgcag ggaatcatgt tgaagcgcct aaaacagatg aagcttggaa aacattttta
     3361 aattaagaaa ggttgatttg atgatgaaat ttaatttgaa attcaattta caattttttg
     3421 ctgatgacac ggctagtggt ggcggtacgt cctcacctac agaagctgca aaaacgaaag
     3481 tggcactggg tgaaacgaaa ttaaaggaca aacacactgg tattgttaaa actgtgacag
     3541 atgcgaagtc gtatgtgacg cctgcattga ttactgatga tgcaatttat atggaaggtc
     3601 gttttgttag ccatcttatg atacattttt aaacgcaaaa aacaccaagc atacgtatat
     3661 acttggtgtc cgaaaaataa cagattaacg tgagtagtac tcaacgatta attgttcatt
     3721 gatttcagct ggcaactcgc tacgttctgg aagacgaacg aaagtacctg ttaagttatc
     3781 agcatcgaag tctaagtaat caggaacgaa attgttgatt tcaactgatt cttcgatgat
     3841 tgctaattta cgtgattttt cacgaacagt aacaacttga cctggtttta atgtgtatga
     3901 tggaatgtca acacgtttac cgtcaacttc tacgtgaccg tgaccaacta attgacgtgc
     3961 ttgacgacgt gtacgcgcta aacctaaagc gtaaacaata gcgtctaaac ggctagcaag
     4021 taagatcatg aagttttcac catgaacacc gccttgttta ccagcagttt ggaatgtgtt
     4081 acggaattga cgttcagtca taccatataa gtaacgtaat ttttgttttt cacgtaattg
     4141 taatccatac tcagataatt ttttacgttg agttggaccg tgttgtcctg gtgcgtaagg
     4201 acgtttgtct aattctttac cagtacctga taatgagata cctaaacgac gagatttttt
     4261 ccagcttgaa cctctgaatc gagccataat gtgactcctc ctttttcttt tttgttgtta
     4321 tgaaaaaaca aaaaagagtg ttgaatgctc aataggatat aatgttttat gtatcctcac
     4381 ctcatagctc cggttacacg acacgtccgc tttgggaaca tcatagcgcc tattaatatt
     4441 caactgctat tttcgtttat tcacacaaag gatattgtat cattttatac gtaaaagtca
     4501 aacataattt gaataaatgg tttagaggtg tgtttctagt acttttacga cgtcttctaa
     4561 acctgcttcg tctgcttcag aaaaacgtgc agggataggg gcatcgatat ctaatacacc
     4621 aatcacttcg ccgcctttat gaattggaat aacgatttca gattggctgt tcgcatcaca
     4681 ggcaatatgg ccagggaagg catgcacatc agcgacacgt tgcgtttgat tttttgcaac
     4741 agctgtacca catacacctt tgccgacttc gatatgaaca catgccggtt taccttggaa
     4801 cggtcctaaa attaatgcct catctttcat taagtaaaaa ccgacccagt taatttgaga
     4861 taaattttca tttaataacg cagaagcatt acttaaattt gcgattaaat ctgtttctcc
     4921 atctaacatc gcatcaagtt gacgagataa gagatgatag tctgttgttt ctgtcattca
     4981 attcactcac tttcttatca atttatccca tattataagc tatctcttga atacgacgca
     5041 attttctgag atattttgat agaactgcaa aaaactgcaa ttaattttaa gattttattt
     5101 taatgcatcc ttaaattacg ttataatagt tttatgtatt taggaggaga cgagtggaca
     5161 tggcattata tattatacta gcgattatca ttgttatttt gattgcaatc ggtgttttat
     5221 tttacatgcg atcaaacaaa aggtcgatta ttcaatctgc tgaagagaga agagaaaagt
     5281 taaatgcatt gtcgtatgat gaaagtttgg agaaattgaa aacgttacac ttatctggtg
     5341 aaacaaaaaa tcagtacgat acattgaacc aatcatggac ggacacaaca aataactatt
     5401 tggcacctgt agatgaaaaa atccatgaag cagaaatgaa tctagataaa ttcaagtttt
     5461 cattagctca aacggacatt gatgatgcac atgctttaat ggaccagtac gaagcgaaac
     5521 atcaagagtt gattagtcaa gcggatgaag tatacgacat gcatcaacag agcgatgaaa
     5581 tttatgaaag aagtaaaaat gaataccgta aattgaagcg cgatgtcctt gcaaatcgtc
     5641 atcaatatgg tgaatcagca agtttattag aaaaggaaat tgaaggtttt gaaccagaat
     5701 ttgaagtgta tgagacgtta aaagctgaag gtaactacca agaagcacac acgcatattc
     5761 aagggttaga tcaagatatt gcttatttaa aagaagatat gagtgaaatt cctgatttaa
     5821 tgcgtgaagc acaaaaagaa ctgcctggtc aatttcaaga tattaaatat ggcgtacgtg
     5881 atttgaaagt agaaggttat gatttagatc atgtgaaagt cgacagtaca ttacaagact
     5941 taaagacaga gcttagcttt gttgaaccga tgatcagtcg tcttgagcta gatgaagcga
     6001 atgacaaatt ggctcaaatt aatgaccgcc ttgatgatat gtatgactta atcgagcatg
     6061 aagttaaatc gaaaaatgct gtagaagaat ctaaagaacg tattacaaat gatttgttcc
     6121 atgccaaaga tatgaattac acgttacaaa ctgaaattga atacgtgcgt gagaattatt
     6181 atatcaatga aagtgatgta caaagtgtgc gtcaatttga aaatgagatt caaaatttaa
     6241 tttcagtgta tgacgaaatt ttatctgaaa tggcgaaatc atctgtacgt tatagcgaag
     6301 tccaagataa cttgaaatat attgaagacc atgttgaagt aattaatacg aaacaagaaa
     6361 agctacaaaa tcatctcgtg tcactaagag aagatgaagc agaggcagaa gaacatattt
     6421 tacgtgtcca aagtaaaaaa gaagaaattt atcgtcgttt acttgcttca aacttaacaa
     6481 gcgtgccaga acgtttcatt attttgaaaa atgaaattga ttatgaagtg cgtgacgtca
     6541 ataaacgttt tagtgagcga ccaattaatg tgcaacaatt gaaggataaa gttaataaag
     6601 tcgtgcttca aatgaacaaa tttgaagatg aagcgaacga tgtgctcatt aatgcggtgt
     6661 acgcagaacg tctcattcaa tacggcaacc gttatcgtaa agacaatcat gatttagata
     6721 agagcttgaa cgaggcagaa cgtttattta aaaacaaccg ctacaagcgt tcaagtgaaa
     6781 tttcagaaca agcgctcgaa caacttgagc ctggtatcgc acaacatatt gaacgagaag
     6841 tgttagaaca acaatcttaa tatatgaatg caacagcgaa gtaacacgtg catctatcgt
     6901 agtgtcatta actatgatag gtgcactttt ttatggggtt catttgaaaa tggtatagtg
     6961 aagccattca atccgaaaag tttaccggaa tgataaaaat ttagaaaata tcgaatggat
     7021 atgacatcag acccaagact tgtagtacaa tgtaaaatga aatttaaaga gaggaagtct
     7081 gcacatgtta tattttgata acgcagcgac gacgaaaccc gatccatccg tgttatcgag
     7141 ttttatgaaa gtgaacgaga agtttttcta taatccgaat agcccacatc aaaaagggca
     7201 agaagttgag cgtttattac aaaatgcgag agaccaaatt aaatcgacgc tgaagttaaa
     7261 cgatgaaaca cttatattta caagcggggc aacagagtcg aacaatatgg ctttaaaagg
     7321 ggcagcacat cagaaaaagc attttggacg taccatcatc acgtcgttac ttgaacatcc
     7381 atctgtatta gaagttatgc gagaacttga gcgagaaggt tttatattaa agtacgtcaa
     7441 tgtgacaact gaggggcgca ttgacattga tgatttaaag tcactgttaa ccaatgatgt
     7501 gattttagtg acgtgcatgc aagtgaataa tattatggga caaatgcaac ctattgaaga
     7561 gattgttgaa agcttaaagc cttatccgaa agtacatttt catgttgatg cggtacaagc
     7621 acttggtaaa tggccgattc aaatgacagg gattgacagt ttatcgttga gtggtcacaa
     7681 gtttaatggt ttaaaaggtc aaggtttact cattttaaaa aacttacatc aaatttatcc
     7741 aattattcaa ggtggcggtc aagaatttgg tttgcgtagt gggacggtca atgtcgcaag
     7801 tgatgtggca ttagcgaaag ccattcgact ggcggaagat caacgtgagt ccttaataca
     7861 aacattgtcg acatttacca ctgcattgcg tgagatgatt caagattatc ctggtgtcgt
     7921 cattaattca ccggttgatg catcaccgca tattttaaat ttggcatttc caggtgtacg
     7981 aggagaagta ttagtcaatg ccttttcgaa gcaagggatt atgatttcga cgacaagtgc
     8041 atgttcgtcc aaacattcga atgtcaatga agtattaaaa gcgatgaaca tttcagtgtc
     8101 gcgtatttta ggaagtatcc gtttgtcatt tgatcgacat acgacaatgc aagatattga
     8161 aacgtttaaa gtggcgtttc accaagtata tagagaagtt gaggagttgt tagaaaaatg
     8221 atttatgacc atatattagt tcgttatgga gaattaacat taaagggggg gaatcgtaaa
     8281 acatttgtca gtcagttgcg ttccaatgta aaacgtgcac tcatgccatt aaaagggtat
     8341 gaagtgaaag cgaatcgtga tcgcatgtat attcaattag aaccagaagc tgacattgaa
     8401 gaaatgatga cacgtatatc gaaagtgttc ggtgtacatt caatcagccc agttttaaag
     8461 ttggaaaagt cgatggatgc ggtgtatgaa cacgcacgat tattcgctca aaattatgaa
     8521 gcgggagata gtttcaaaat tgaagtgaaa cgctctgaca aaaaatttga atatgaaaca
     8581 tttgcaatcc aacgtatggt cggtggtgaa gtgcttaaaa gtaatacatc actccatgtg
     8641 gatgttcgcc aacctgacca tgaaatcaaa gtggaagtcc gtctagatgc gatttatatg
     8701 tatgaccgca ttattccagc gattggtggt ttgccagtcg gaacaggagg aaagacgctg
     8761 ttaatgttat caggcggtat tgattcaccg gttgcaggga tggaagtgat gcgccgtggt
     8821 gtgacgattg aagcgattca tttccacagt ccgccattta caagtgaaaa agcgaaagaa
     8881 aaagtgattg aactgacgcg aattatggcg gagagagtcg gttcaattcg tttacacatt
     8941 gtgcctttta cagaagtcca aaaacaaatt cataaagtcg ttcatgaacg ttacacgatg
     9001 acatcaacac gccgcatgat gttaagaatc gccgataaag tcgtgtatca aattggagct
     9061 gacgcgattg taaatggtga aaacttagga caagtcgcta gccaaacatt gaaaagtatg
     9121 tatgcaatta atgcggtcac gaacacgcca attttacgtc cgttattgtc attagataaa
     9181 gaagaaatcg tgctaaaggc aaaggatatt ggcacatttg aaacgtctat tcaaccttat
     9241 gaagattgtt gtacgatttt cacaccgaaa aatccagtga cagagccgca atttgaaaaa
     9301 gtattacaat atgaatctgg ttttgatttt gaagaaatga ttgatagagc ggtaggtaat
     9361 attgaaacca ttgtgatcga taaaaactac caaacccatc aagatgagca aaacacatgg
     9421 gatgatgact tgttctaaaa agggggataa acaatgattt tagaatggga tgggacactg
     9481 attttaataa tcattagttt aggcttttta gctgcattta tcgatgctgt agtcggtgga
     9541 ggcggtttaa tatcgatccc cgcattactt gccattggta tgccacccgc tgttgcatta
     9601 gggacgaata aattagcgag tgcattcgga tcattgacga gtgcgattcg ttttattcgc
     9661 tcgggtaaag tggatctcgc tattgttgct aaactgttcc ctttatcctt tatcacctcg
     9721 attttaggtg caatcgtagc agtttattta cctgctgaac ttttaaagcc aattgtgatt
     9781 gccattttgt caatggttct cgtttatacg ttattgaaaa aagattgggg cagtatccgt
     9841 acatatacta cgctcccttt atataaaatg attttgttta cgtgcctcat tgtggtcatc
     9901 ggcttttatg atggctttct tggtggcggg acaggatcat ttttactctt cgtcttttta
     9961 ttattaggct ttgatttttt aagtgctgcg ggtaatgcga aagtgttgaa ttttgcctca
    10021 aacttaggtg cgttactgtt gtttatttat ttaggccgtg tcgattatgt ttatgggtta
    10081 agcatgggtg tcagtatgat tgcggggtct tatgttggcg cgatatttgc actgaaaaaa
    10141 ggagtcagtt atgtcagaat cttatttgtt atcgtcactg tcgtccttat tttaaaaaat
    10201 gtctgggatt acatctcaac gcattaacaa ggaagagatt gtgcatgatt aagatgcatg
    10261 tccttcaaaa actattgatt tacgttcaat tttaaatttc aaatgatttc ttacagttat
    10321 ttgacctaaa gactatattt tttgttatga taaatttgaa aaacatttga aaggaagttg
    10381 attatgtcaa a
//
LOCUS       DANHOL010000088        10371 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.088, whole genome shotgun sequence.
ACCESSION   DANHOL010000088 DANHOL010000000
VERSION     DANHOL010000088.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 10371)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10371)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10371
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.088"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     regulatory      107..210
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            277..960
                     /gene="tenA"
                     /locus_tag="PTC08_001595"
     CDS             277..960
                     /gene="tenA"
                     /locus_tag="PTC08_001595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiaminase II"
                     /protein_id="HDK5683100.1"
                     /translation="MRFSEQIKQEAQPIIEQIYHDGFIQGMLNGDIATESVKHYLRAD
                     SRYLNEFAKIYALLIPKVDTKDEIQFLTEQIQFASSGEVEAHHILADYVGEDYQSIIQ
                     RGDWYPSADHYIKHMYYNAYAFDNVAFTIAAMAPCPYVYQRLGKMAIENHHFEANHPL
                     KGWFDFYNREMDTLLSYIDRWLDSYAEVSSEKVQQQLRQNFLQSTVHERNFFNMADQL
                     EKWEFGGEK"
     gene            960..1766
                     /gene="thiD"
                     /locus_tag="PTC08_001596"
     CDS             960..1766
                     /gene="thiD"
                     /locus_tag="PTC08_001596"
                     /EC_number="2.7.1.49"
                     /EC_number="2.7.4.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016426465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional hydroxymethylpyrimidine
                     kinase/phosphomethylpyrimidine kinase"
                     /protein_id="HDK5683101.1"
                     /translation="MKKPKIALTIAGTDPSGGAGAMADLKSFHSCGVYGMAAVTSIVA
                     QNSMGVQHIHNLEASWLEEQLASVFNDEMPHALKTGMIPTPEMMEVIASNLKKVDIPY
                     VIDPVMVAKSGDSLMDQKVRNRLKETLLPYADVATPNVPEAEEIAGVTIDSVEKIHQV
                     GRFFIHDIGSKGVIIKGGHLEGDAIDHLFTQEGHYEFKSERFSTQHTHGTGCTFSAVI
                     TAELAKGKSVYDAVAKAKKYISLAIQHTPEIGKGRGPVNHFAYEKLNGWD"
     gene            1768..2571
                     /gene="thiM"
                     /locus_tag="PTC08_001597"
     CDS             1768..2571
                     /gene="thiM"
                     /locus_tag="PTC08_001597"
                     /EC_number="2.7.1.50"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyethylthiazole kinase"
                     /protein_id="HDK5683102.1"
                     /translation="MNYLAAVRKQQPLVVCYTNDVVKNFTANGLLSMGASPAMSEAPE
                     EAVDFFKVTQGLLINIGTLTTRNSEDMLTIAKSANQMGVPIVFDPVAVGASQFRKDFC
                     QRFLEEIDVAVIKGNASEILTLVDTATTMKGTDSASDIDVVSIAQQAYEKYQTAIVLS
                     GKEDVIVHDGKVVILSNGSPLLTKITGAGCLLGAVVASFLLGETKPSIDQLIEAVSYY
                     NISAEQAELREGADLPGTFLVAFIDALNQTLAESYLLEIKKREVSENDI"
     gene            2561..3199
                     /locus_tag="PTC08_001598"
     CDS             2561..3199
                     /locus_tag="PTC08_001598"
                     /EC_number="2.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HDK5683103.1"
                     /translation="MTFNRKQLRVYFIAGTQDVKQGSLNGILKEALEAGITMYQFREK
                     GSSSLQGEEKTAMAVRLRDLCRHYQVPFIVNDDVDLAIEIDADGIHVGQEDAKVQSFQ
                     HLLEDKIIGLSVGSFEEYDQSDLTNVDYIGVGPVYETSSKLDASKPGGIRLIRRMREY
                     DENIPMVAIGGITEENVAPLLKNGADGIATISSITHSTDIEKSVKRYLQYFK"
     gene            3288..4154
                     /gene="yidC"
                     /locus_tag="PTC08_001599"
     CDS             3288..4154
                     /gene="yidC"
                     /locus_tag="PTC08_001599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HDK5683104.1"
                     /translation="MKNKALMTMLAGVVLLLAGCDYSKPSNRDGFFFNTFVQPMDRLI
                     HWLGDHLNNNYGLAIIIIVLVVRIVLLPFMLSNYKNMHMMREKMKIAKPEITEAQEKV
                     KRARTQEDKMAANQEMMQVYKKYNMNPMASMLGCLPLILQMPIIMGLFFVLKYPSGGG
                     ITKYSDFLWFHLDKPDIWITIIAGVLYFIQAYVSSFNMPQEQRQMGYMMMIISPIMIV
                     WISFSSAAALGLYWSVSAAFLVVQTYIANVVYGKKAKEEVAPLIKKFEAEKNGNKTGK
                     NTQVVSKKNKKK"
     gene            complement(4208..4864)
                     /locus_tag="PTC08_001600"
     CDS             complement(4208..4864)
                     /locus_tag="PTC08_001600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HDK5683105.1"
                     /translation="MKQQHIQAAEQYMRKTHQHDSSGHDIAHVLRVRKRALEIAQHYP
                     SADPYHIEMASLLHDTVDDKLVDVKSSRQALFAFFKEQGVSVMDQEAIIYIIDHMSFR
                     KTKKVGTLKTIEAQIVQDADRLDAIGAIGIARTFQFAGHFNEPMWTGTHRLTEMYQLS
                     DIDAVPPSAIKHFFEKLLKLKDLMNTPVAKDMAQQRHDFMESFLQQFFAEWDTEIKRS
                     "
     gene            complement(4885..6375)
                     /gene="cls"
                     /locus_tag="PTC08_001601"
     CDS             complement(4885..6375)
                     /gene="cls"
                     /locus_tag="PTC08_001601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cardiolipin synthase"
                     /protein_id="HDK5683106.1"
                     /translation="MPEFFYAIFYNHNVLFNYILVGAFLLNLIFIFTIIFMERRSASS
                     IWAWIFVLGLFPLVGFVLYLLFGRQIQRKSIFKLEKQDRIGLDSIVNDQLTAIKNGKF
                     EVDNPHIQNYSRMIQMLLYNNAAFYTNNNEIKLLTDGNEKFDCLKEDIRNAERYVHIQ
                     YYIFRHDTLGKSILKLLEEKLEQGVEVKMLYDDMGSRALTLRDFKRFKEKGGHVESFF
                     PSKLPLINLRMNNRNHRKIVIIDGQIGYVGGFNVGNEYLGLSKKFGYWRDTHLRIQGN
                     AVSALQLRFILDWNSQSHRDNITYSSQYFPKPQQTHNGNIGVQIASSGPDEFWEQVKY
                     GYLKMISMAKNDIYIQTPYFVPDEAFMDALKIAALGGVNVNIMIPSKPDHPFVYWATF
                     KNVASLLEAGARVYLYDNGFLHAKTLTIDDEITSVGTTNMDNRSFTLNFEVNAFVYNE
                     ELAREVRESFEEDLKVCSELTKERYAQRSLWIKFKESVSQLLSPIL"
     gene            6507..6794
                     /gene="csoR"
                     /locus_tag="PTC08_001602"
     CDS             6507..6794
                     /gene="csoR"
                     /locus_tag="PTC08_001602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper-sensing transcriptional repressor CsoR"
                     /protein_id="HDK5683107.1"
                     /translation="MTEQAHHSEEIKRNLKSRLNRIEGQVKAINRMIDEDVYCDDVLT
                     QIRATRSALNSVASRLLDHHMKGCIKHKIDAGHQDEAMEELLVTFQKLMKD"
     gene            6807..7028
                     /locus_tag="PTC08_001603"
     CDS             6807..7028
                     /locus_tag="PTC08_001603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy-metal-associated domain-containing
                     protein"
                     /protein_id="HDK5683108.1"
                     /translation="MENGYVKVTQLTTEAQQQQLSDRLLRLIGVESVAIDVATQSLTL
                     TYDTPANLNTIEKEIYDAGFPVIQSHKGV"
     gene            7032..7238
                     /locus_tag="PTC08_001604"
     CDS             7032..7238
                     /locus_tag="PTC08_001604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy-metal-associated domain-containing
                     protein"
                     /protein_id="HDK5683109.1"
                     /translation="MAKHMIEVEGMTCAHCKAAVEGAVKENAHVTHVEAFPADNRVEV
                     EVTDDSALADVKQRIYDQGYDVIS"
     gene            7339..9519
                     /locus_tag="PTC08_001605"
     CDS             7339..9519
                     /locus_tag="PTC08_001605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper-translocating P-type ATPase"
                     /protein_id="HDK5683110.1"
                     /translation="MTQEETFKITGMTCAACSARIERVLQRETGIDQINVNLVMENGT
                     VKYDPSQISIEEIYERVAKIGYEAFPMETKDETAKRKSDELKRQKGKFIISLILALPL
                     LYTMFGHFSFLGFIPVPELLMNGWFQFILATPIQFVLGWQFYVGAYKSLKSKSANMDV
                     LVAMGTSAAYFYSLYLMLTHLGHSGHVPLYFETSAVLITLILLGKYFEMRAKGHASDA
                     ISKLAALQVKDAEVERDGKIEMIAIDDVRVGDIVWVRSGQQIPLDGQVIEGSTTVNEA
                     MLTGESMPVEKNIGDTVIGSTINQTNFIKLQVTHVGEDLVLNQIIKVVEEAQNDKPQI
                     QRLADKISNIFVPTVVVLALLSFIVWFFVVTPFQFTAAFEIFIAVIVIACPCALGLAT
                     PTSIMVGSGRAAESGILFKTAEALEQAQHVDTIVFDKTGTITNGEPKVVHVYHETEES
                     TIGAYVKSLEMQSEHPLSKALVDYYSDEAVHTVSQYETHAGSGISGVIDDNRVRIGSI
                     RFVTNNDLTQEQQDRIHSLAEQGATVVGMTINETLIAIIGVRDEPKAEAKAVIETLNK
                     NYDLVMLSGDSEQTAQAIGRELGFTRVIAEVKPDEKSKVVTELQNEGKRVMMVGDGIN
                     DAPALMKSDIGVAMGSGSDIALESADIALVRNHLDGIAEALQLSRLTIKNIKQNLFFA
                     FCYNLIGIPIAAAGFLAPWVAGTAMAFSSVSVVLNALRLKNVKK"
     gene            9605..9751
                     /locus_tag="PTC08_001606"
     CDS             9605..9751
                     /locus_tag="PTC08_001606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683111.1"
                     /translation="MAKKNDKLQNVVQMLSSIGVKVKKTKPRLDIMRSLPKPNPATEK
                     LKPY"
BASE COUNT         3322 a         1754 c         2161 g         3134 t
ORIGIN      
        1 gtcatttgtt ttgttaaatt atacatatat ttcgcaattt gtttagtgct tttacataat
       61 tgaacttgcg ttaggtttct gatacattaa aggtaactaa aaaatgaagg actactaggg
      121 gtgccgattt gtggctgaga tgaatggata ttcagaccct ctgaacctga tttggatgaa
      181 accaacgtag ggaagtagca catggacacg catgctttag tgtgtgaaca aggctacttt
      241 taacgtagtc ttttttcata ttaaaggaga atgaagatgc gtttttctga acaaattaaa
      301 caagaagctc aacccattat tgaacaaatt tatcatgatg gttttataca aggtatgctt
      361 aacggggaca tagcgacaga atcagttaaa cattatttac gcgcagactc acgttacttg
      421 aatgaatttg ctaaaatata tgcactgctg atccctaaag tggatacgaa agatgaaatt
      481 caatttttaa cagaacaaat tcagtttgcg agttctggag aggtagaggc gcatcatatt
      541 ttagcggact atgtcggtga agattatcaa agtatcattc aacgagggga ttggtatcca
      601 tctgccgacc attatattaa acatatgtat tataacgcat atgcttttga caatgtcgct
      661 tttaccattg ctgcaatggc gccatgtcca tatgtgtacc aacgattagg taaaatggcg
      721 attgaaaatc atcactttga agccaatcat ccattaaaag ggtggttcga tttttacaat
      781 agagaaatgg atacgttgtt gtcctatatt gatcgttggc ttgattcata tgcagaagtg
      841 agttccgaaa aagttcaaca acaattaaga caaaactttc tacaaagcac ggttcatgag
      901 cgaaactttt tcaatatggc cgatcaactt gaaaaatggg aatttggagg agaaaaatga
      961 tgaaaaaacc aaaaattgcg ctaacgattg caggcacaga tccaagtggt ggtgcagggg
     1021 cgatggcaga cttgaaatct ttccattctt gtggtgtcta tggtatggct gcagtgacaa
     1081 gtatcgtggc tcaaaattca atgggtgtac aacatattca taatttagaa gcaagttggt
     1141 tagaagaaca attagccagt gtctttaatg atgaaatgcc acatgcgtta aagacaggta
     1201 tgattccgac accagagatg atggaagtga ttgcgtcaaa tttgaaaaag gtggatattc
     1261 catatgtgat tgacccagtt atggttgcta aaagtggtga ttctttaatg gaccaaaaag
     1321 tgcgaaatcg tcttaaagaa acactgttac cttatgcaga tgtagcaaca cctaatgttc
     1381 cagaagctga agaaatcgct ggtgttacaa tcgattcggt ggaaaaaatt catcaagttg
     1441 gtcgcttttt cattcatgat attggttcaa aaggggtcat tattaaaggt ggccatttag
     1501 aaggtgatgc catcgatcac ttatttacgc aagagggtca ttacgagttt aaaagtgaac
     1561 gtttttcaac gcaacataca cacggcacag gatgtacatt ttcagccgtc atcacagccg
     1621 aattagctaa aggaaaatca gtttatgacg ccgtagctaa agcaaaaaaa tacatctcat
     1681 tagcgattca acatacacca gaaattggta aaggtcgagg tccagtgaat cactttgcat
     1741 atgaaaaatt aaatgggtgg gattaacatg aattatttag cagcagtcag aaagcaacaa
     1801 ccccttgtcg tttgttatac aaatgatgtc gtcaaaaatt ttactgccaa tggtttgttg
     1861 agtatggggg caagtccggc aatgagtgaa gcaccagaag aagcagtaga ttttttcaag
     1921 gtaacacaag gcttattaat caatataggt acgttaacca cgagaaatag tgaagacatg
     1981 cttaccattg ctaagtctgc gaatcaaatg ggtgtaccca ttgtttttga ccctgttgca
     2041 gtaggcgcat cgcaattccg taaagatttt tgtcaacgct ttttagaaga aattgatgtg
     2101 gctgtcatta aaggcaatgc atctgaaata ttgacattag tggatacagc gacgacgatg
     2161 aaaggaacag atagtgcttc tgatattgat gtggtcagca ttgcacaaca agcttacgaa
     2221 aagtatcaaa ccgcgattgt cctctcaggt aaagaggatg tcattgtaca cgatggtaag
     2281 gtggtcatct tatcaaatgg ttctccattg ttgacaaaaa ttaccggagc aggttgttta
     2341 ttaggcgcgg tggtggcaag ttttctatta ggtgaaacaa aaccatctat cgaccaactc
     2401 atcgaagccg tttcgtacta taacatttca gcagaacaag ctgaattacg tgaaggtgca
     2461 gatttaccgg gtacattttt agtcgctttt atcgatgcat taaaccaaac tttagctgag
     2521 tcctatttat tggagattaa aaagagagaa gtgagtgaaa atgacattta atcgaaaaca
     2581 attacgtgtg tattttattg caggtacaca agatgtcaaa caaggtagcc taaatggtat
     2641 tttaaaagaa gcgttagaag cgggtattac gatgtatcaa tttcgtgaaa aaggctcttc
     2701 atctttacaa ggtgaggaga aaactgcaat ggccgttcgt ttaagagact tgtgtcgcca
     2761 ttatcaagta cccttcattg ttaatgatga tgttgattta gcgattgaaa ttgatgcaga
     2821 tggtatacat gttggccaag aagatgcgaa agtacagtca tttcaacatt tattagaaga
     2881 taaaattatc ggcctcagcg tcggaagttt tgaagaatat gatcagtctg accttaccaa
     2941 tgtcgattat attggtgtgg gccctgtata tgaaacaagt tctaagttgg atgcaagtaa
     3001 accaggtggc atccgtttaa ttcgacgtat gcgagaatac gatgaaaaca ttccgatggt
     3061 cgctattggt ggaattactg aagaaaatgt ggcgccactt cttaaaaacg gcgctgatgg
     3121 tattgcgacg atttcatcaa ttacacacag tacagatatt gaaaaatctg tgaaacgtta
     3181 cttacaatat tttaaataaa gttcaattta tgccggaata tgtttccacc gcgtctattt
     3241 ctatgataaa atatcattta tgtgaatata tcattagagg tggaaaaatg aagaacaaag
     3301 cgttaatgac aatgcttgca ggtgtagttt tacttctagc gggttgtgac tatagtaaac
     3361 cgagtaatcg agacggattc tttttcaata cgtttgttca accaatggac agattgattc
     3421 actggttagg ggatcattta aataataact atggtttagc cattattatc atcgtattgg
     3481 ttgtacgtat cgtcttatta cctttcatgt tatcaaatta caaaaacatg catatgatgc
     3541 gtgaaaaaat gaaaattgcg aaacctgaaa ttacagaagc gcaagaaaaa gtaaaacgtg
     3601 cacgtacaca agaagacaaa atggcagcga accaagaaat gatgcaagta tacaaaaaat
     3661 ataacatgaa tccaatggca agtatgttag gctgtttacc gcttatactt caaatgccaa
     3721 tcatcatggg attattcttc gtcttaaaat atccgtctgg tggcggaatc acgaagtact
     3781 cagatttctt atggttccat ttagataaac cggatatttg gattactatc attgcgggtg
     3841 tcctttactt catccaagcc tatgtgtcaa gttttaatat gcctcaagaa caacgtcaaa
     3901 tgggttatat gatgatgatt atctcaccaa ttatgattgt gtggatttca ttcagctctg
     3961 cggcggcgtt aggtttatat tggtcagtat cagcagcttt ccttgtagtt caaacttata
     4021 ttgccaatgt ggtatatggt aaaaaagcaa aagaagaagt ggcgccatta attaaaaagt
     4081 ttgaagcaga aaaaaatggc aacaaaacag gtaaaaacac acaagttgta agtaaaaaga
     4141 acaaaaagaa ataatcatat tgcacatact taaaggctgg gatgctaagt tcccagcctt
     4201 ttcctattca tgaccgtttg atttcagtgt cccattcagc aaaaaattgt tgtaaaaaac
     4261 tttccataaa atcatgacgt tgttgcgcca tgtcttttgc tacaggtgta ttcattaaat
     4321 cttttaattt gagtagcttt tcaaagaagt gtttgattgc tgatggtggt accgcgtcta
     4381 tgtctgacag ttgatacatt tcggttaacc gatgtgtccc tgtccacatc ggttcgttaa
     4441 agtgaccagc aaattgaaat gtacgtgcaa tgccaatcgc gccgatagca tcaagtctgt
     4501 cagcatcttg gacaatttgt gcttcaattg ttttcagtgt accgactttt ttagtttttc
     4561 gaaagctcat atggtcaata atgtaaataa tggcttcttg atccattact gatacacctt
     4621 gttccttaaa aaatgcaaat aatgcttgac ggctactttt gacgtctacc aatttgtcat
     4681 caacagtgtc atggaggagt gatgccattt cgatatggta agggtcagct gatggatagt
     4741 gttgtgcgat ttcaagggcg cgctttctaa cacgtaacac atgcgcgatg tcgtgtccac
     4801 tactatcatg ttgatgtgtc tttctcatat attgttctgc tgcttgaata tgctgttgtt
     4861 tcattttgtt agtcattcct taagttataa aataggggag agcaattgac tgacggactc
     4921 tttaaatttg atccataagc tgcgttgggc atagcgttct tttgtcaatt cgctacatac
     4981 ttttaagtct tcttcaaaac tttcgcgtac ttctctcgct aattcttcat tatatacaaa
     5041 tgcattcact tcaaaattta aggtaaaact ccgattatcc atatttgttg tacctacact
     5101 cgtaatttca tcatcaatgg ttaatgtttt cgcgtgtaaa aagccgttat cataaaggta
     5161 gacacgtgcg ccggcctcga gtaaactcgc gacattttta aaagtggccc agtaaacaaa
     5221 tgggtgatca ggtttcgatg gaatcataat attaacgtta acgccaccta aagctgcaat
     5281 tttaagcgca tccataaaag cttcatcagg cacgaagtaa ggtgtttgaa tgtaaatatc
     5341 atttttcgcc atcgaaatca tttttaaata accatatttg acttgttccc aaaattcgtc
     5401 tggaccactt gaagcaattt gaaccccaat attaccatta tgcgtctgtt gcggttttgg
     5461 gaaatattga ctactatagg taatgttgtc acggtgcgat tgagagttcc agtctaaaat
     5521 gaaacgcaac tgaagtgcac tgacagcatt cccttgaata cgtaaatgtg tatcacgcca
     5581 atacccaaac tttttagata agccgagata ttcatttccg acattaaagc cacctacata
     5641 gccaatttga ccatcaatga tcacaatttt tcggtgattt cgattgttca ttcgtaaatt
     5701 aatgagcggc agtttggatg ggaaaaatga ttctacatgt cctccttttt ctttaaagcg
     5761 tttaaaatcg cgtaatgtga gtgcgcgcga ccccatgtca tcatataaca ttttgacttc
     5821 tacaccttgt tcgagttttt cttctaacag ttttaaaata cttttaccaa gggtatcgtg
     5881 acggaaaata taatattgaa tatgtacata gcgctctgca ttacgaatat cttcctttaa
     5941 acaatcgaat ttttcgttac catctgtcaa taacttaatt tcgttattgt tcgtataaaa
     6001 ggcagcattg ttatacagta acatttggat catacgactg tagttttgaa tatgggggtt
     6061 atcaacttca aattttccat ttttaattgc agtaagttga tcattcacga tagagtctaa
     6121 accgatacga tcttgttttt caagtttaaa aatggatttt ctctggattt gtcggccgaa
     6181 taataaataa agtacaaagc ctacaagcgg gaataagcct aatacaaaaa tccatgccca
     6241 gatggaactc gcacttcttc gttccataaa aataatggta aagatgaaga ttaaatttaa
     6301 taaaaatgca ccgactaata tgtaattgaa cagtacattg tgattataaa atatcgcata
     6361 aaaaaactct ggcatcactt ttatctcctt tttcgtgaag tgcttttatt gtatcatgtt
     6421 ctataaaata gaggaatttt acgcattgac atatacctat acagggtata tcataataat
     6481 atcaaaatga atctggggga tgtgacatga ctgaacaagc acatcattct gaagaaatta
     6541 aacgtaactt gaagtcgcgt ttgaatcgta ttgaaggcca agtgaaagca atcaaccgaa
     6601 tgattgacga agatgtctat tgtgatgacg tgttgacgca aattagagcg acacgttcgg
     6661 ctttaaacag tgtggcgtcg cgtctgttag atcatcatat gaaaggatgc atcaagcata
     6721 agattgacgc gggacaccaa gacgaagcga tggaagagtt attagtaaca tttcaaaaac
     6781 tcatgaaaga ttagtgaggt acaattatgg aaaatggtta tgttaaagta acacaactga
     6841 caactgaagc acagcaacaa cagctatctg atcgtttgct tcgtttaatt ggtgtcgagt
     6901 ctgttgctat tgatgtggca acacaatcgt tgacgctcac ttatgacacg ccagcaaatt
     6961 tgaacacgat agaaaaagaa atttatgatg caggatttcc tgttatccaa tcacataaag
     7021 gagtgtaact gatggcaaaa catatgattg aagtagaagg tatgacttgt gcgcattgta
     7081 aagcagcagt tgaaggtgca gtgaaagaaa atgcgcatgt gacccacgtt gaagcatttc
     7141 cagctgacaa cagagtagaa gtagaagtaa cagatgacag tgcattagca gatgtgaaac
     7201 aacgtattta cgatcaaggg tatgacgtta tatcataatt taacagcaat cagggcttag
     7261 tttttcattg aagagatgag aggtaagccc tcatttcgta tttaaaatat accctctata
     7321 ggtataggag atgacataat gactcaagaa gaaactttca aaattacagg tatgacatgt
     7381 gccgcctgtt cagcacgtat tgaacgggtg ctccagcgtg aaacgggaat tgaccaaatt
     7441 aatgtcaact tagtgatgga aaatgggaca gtgaagtacg atccgagcca gatttcgatt
     7501 gaagagattt atgaacgtgt cgctaaaatc gggtatgaag cttttccaat ggagacgaaa
     7561 gatgaaacag ctaaacgaaa aagtgatgaa ttgaagcgac aaaaagggaa attcattatt
     7621 tcactcattt tagcattacc gttactgtat acgatgttcg gccatttttc atttttaggt
     7681 tttattccag ttccagaact tttaatgaac ggctggtttc aatttatatt agcaacgccg
     7741 attcaatttg tactcggctg gcaattttat gtcggtgctt ataaatcttt gaaaagtaaa
     7801 agtgcgaaca tggacgttct cgttgcgatg ggaacttcag cggcttactt ttatagtctt
     7861 tatttaatgt tgacacattt gggccatagc ggtcatgtgc cactttattt tgaaacgagt
     7921 gcggtattaa ttacactcat tttattaggt aaatatttcg aaatgcgtgc aaaagggcat
     7981 gcgagtgacg cgattagcaa acttgctgca ttacaagtga aagatgcgga agtggaacgt
     8041 gatggcaaga ttgaaatgat tgcgatagat gatgtccgtg taggtgacat tgtatgggtg
     8101 agaagtggtc aacaaattcc attagacggt caagtgattg aaggttccac aacggtcaat
     8161 gaagcgatgt tgacagggga aagtatgccc gttgaaaaaa atatcggcga tactgtcatt
     8221 ggaagtacaa tcaaccaaac gaattttatt aaacttcaag tgacccatgt tggtgaagat
     8281 ttagtattga atcaaattat taaagtcgtt gaagaagcgc aaaatgataa accacaaatt
     8341 caacggttag cggacaaaat ttcaaatatt ttcgtaccga ctgtcgttgt gttggcatta
     8401 ctgtcattta tcgtatggtt tttcgttgtc acaccgtttc aatttacggc agcatttgaa
     8461 attttcatcg ctgtcatcgt cattgcctgt ccttgtgctc taggacttgc gacaccgact
     8521 tcgattatgg ttgggtcagg tcgtgcagca gaatctggta ttttatttaa aacagcagaa
     8581 gcattagaac aagcccaaca cgtcgatacg attgtctttg ataaaactgg tacaattacg
     8641 aacggcgaac ctaaagtcgt gcacgtgtac catgaaacgg aagaatcaac tattggcgct
     8701 tatgttaaaa gtctggaaat gcaatcagag catccactgt ctaaagcgtt agtcgattat
     8761 tatagtgacg aagcagtcca cactgtttca caatatgaga cacatgcagg aagtggtatt
     8821 tcaggtgtta ttgacgacaa ccgtgtgcgt atcggttcca ttcgtttcgt tacaaacaac
     8881 gacttaactc aagaacaaca agatagaata cattcgttgg cagaacaggg cgcaacagtg
     8941 gttggtatga caattaatga aacactcatc gcaatcatcg gtgtgagaga tgaaccaaaa
     9001 gcagaagcga aagcagtcat tgaaacgtta aacaaaaatt acgacttagt gatgttgagt
     9061 ggagatagtg aacagacagc gcaagcaatc ggtcgtgaac tcggctttac acgtgtcatc
     9121 gcagaagtga aaccagatga aaaatctaaa gtcgttactg aactccaaaa cgaaggaaaa
     9181 cgtgtcatga tggtcggtga tggcattaat gatgcaccag cattaatgaa aagtgatatc
     9241 ggcgtcgcaa tgggttctgg ctcagacatc gcattagaat ccgcagacat tgcgcttgta
     9301 cgtaatcatt tggacggtat tgccgaagca cttcaactta gtcgccttac gattaaaaat
     9361 attaaacaaa acttattttt cgccttttgt tataatttga ttggtatccc tattgctgca
     9421 gcaggctttt tagcaccttg ggttgcaggt acagcgatgg catttagttc agtttcagtt
     9481 gtattaaatg ccttgcgatt aaaaaatgtg aaaaaataat tttatcaatt tacaatttgg
     9541 tgtagtaaag cgctacaatt tagggtaaga taaaggagta gatagcagaa tacggggtga
     9601 tcaaatggcg aaaaagaatg ataagcttca aaatgtggtc caaatgttat cttcaatcgg
     9661 tgtgaaggtg aaaaaaacga agccccgatt agatattatg cgatcattac ccaaacctaa
     9721 tcctgcaact gagaaattga aaccttatta agtatgtttg agaagcactt agatgttgac
     9781 tgatgtcacg tctaggtgct ttttttcaga tttttaaact ttaccttttt aaacacttag
     9841 ctaaatatca actctacctt ttaaacactt cgttgagtat cttcgatttt gtaatcgggg
     9901 gagttataga aatattattg attttgttga ttgctcctct ttggccttgc tttcctaggg
     9961 gacttgcctc aactaaattc ggcttgattg gagagaacac tggatggtgg ccgaattgga
    10021 ttttcggcta cgtctgatcc ctcaggagtc tcggccagtt ccgcaatcca aaatcaatat
    10081 aagtttaaga gagaacccga tgacaaaatc gaagtgtaca tcatggtgaa aaaacaaggg
    10141 agatgtagcg atatgaacat caaaatctta atatataagt ttatatgttt ttggtataga
    10201 ttgatgtgtt ctatcgattg aatctaaaac gaatcagcgg ttgacaatag taattaattt
    10261 taaggaggat tgaatggttt ttagtgggat agttttactt atgaaagctg cataatggtg
    10321 aagattataa atttctgaac gtattgcttt tatacaagaa ttagtactag a
//
LOCUS       DANHOL010000089        10163 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.089, whole genome shotgun sequence.
ACCESSION   DANHOL010000089 DANHOL010000000
VERSION     DANHOL010000089.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 10163)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10163)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10163
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.089"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            80..679
                     /locus_tag="PTC08_001607"
     CDS             80..679
                     /locus_tag="PTC08_001607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase"
                     /protein_id="HDK5683112.1"
                     /translation="MAFELPKLPYSYDALEPHIDKETMEIHHSKHHNTYVTKLNAAVE
                     GTEFENKSLEDLIANLDSVPENLRTAVRNNGGGHLNHSIYWQILAPNSEEKGEVVDKI
                     KEQWGSLDEFKSEFADKAAGRFGSGWAWLVVNNGKLEIVTTANQDSPLTDGLTPILAL
                     DVWEHAYYLKFQNKRPDYISTFWNVVNWEKVDELYKAAK"
     gene            972..3011
                     /locus_tag="PTC08_001608"
     CDS             972..3011
                     /locus_tag="PTC08_001608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HDK5683113.1"
                     /translation="MLKRLKEKTNDEKMRHHMNQRINFIFAIIIFAFVAIVLRLGYLQ
                     IAQGSQYNQMIRESENVTVNESVPRGRILDRNGNVIVDNASKKSITYTRGKNTNQQEI
                     LNTAKKLSKLIKMDTSKITERDKKDFWILKHPDKAKDLMKKEQQLYENGDISQEDYDQ
                     QLLTKISEQQLDSLSKKDLQVLAIYREMMQGSTLSPRTIKKDKVTDEEYASVSQKLAD
                     LPGINTEMDWDRKYPYGNTLRGILGSVSTPEEGLPKELTDDYLSKGYSRNDRVGKSYL
                     ELQYENVLRGKKKEMRYTTDKSGAIIDSEVVNEGSRGDDLVLTIDIKLQQKAESYLES
                     QIKKLRSEGAQDMDSAMMVVQDPNNGDILAMVGKKIAKDGTLTDYDIGTFTSQYALGS
                     SVKGATLLAGYQNDVIHVGDKMVDEPLTFKGGLTKRSYFNKNGQKLIDDKEALMHSSN
                     VYMFKTALKLAGLEYQPHMSLPTDVTAPGQKLRKGLNQVGLGVKTGIDLPNEVSGQIE
                     RLKDNPGNYLDLAIGQYDTYSPLQLSQYVSTIANNGYRIQPHIGKEIHKATSDDELGP
                     VKHKINGHVLNRVNNTPDEIKEVQKGFDMAFNKPQGTGYASFNKTKVRAAGKTGTAEV
                     FQDGEPRVNSTYIGYAPVDDPQLAFSIVYTNQPVPEPWLNGGDLGRDVINYYFDK"
     gene            3280..4239
                     /locus_tag="PTC08_001609"
     CDS             3280..4239
                     /locus_tag="PTC08_001609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PstS family phosphate ABC transporter
                     substrate-binding protein"
                     /protein_id="HDK5683114.1"
                     /translation="MKRWQTLGGTLIGVSLVLGACGGASQQSSDQGDTKSSNVEGTVK
                     GNGSSTVAPIIEKLNEDFSSSHDKATVENVTSGTGDGFKQFIAGKTDFSNASRPIKDE
                     EKEQLKDKGIDYTEFKVARDGLTIAVNKDNDFLKEISLEDLKKIYSGEAKKWSDVDSD
                     YPDKPIKAFSPDQSHGTYDFFTEEVMDDVDIQAEKNQNTDVIVKSVQDNKEGIGFFAY
                     NFYKENENSLKAVKVKGDDGKAIGPNQKSIQDGSYPLSRPLFIYANNKKLKSNDVFAE
                     FMKFTLENKGKAAEAKGVDYVALPEKDYDAQLKKLEKITSESK"
     gene            4357..5283
                     /gene="pstC"
                     /locus_tag="PTC08_001610"
     CDS             4357..5283
                     /gene="pstC"
                     /locus_tag="PTC08_001610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease subunit PstC"
                     /protein_id="HDK5683115.1"
                     /translation="MKSQNNIRALIQKKSHAGASLSAKIMPIILAIIAAISILTTLGI
                     VITLLTETITFFTRVPLSHFLLETDWNPFSATPRYGIWALIIGTLKITLIATIFAVPV
                     GLGAAIYLSEYASKKTRKIIKPILEVLAGIPTIVYGFFALTLVTPVLRTIFPSIGSFN
                     AISPGLVVGVMIIPMIASMSEDAMSSVPQKIREGALGLGSTKLEMVFKVVIPAATSGI
                     MASIVLAISRAIGETMIVSLAAGSSPSFDLSFSHSIQTMTAYIVQVSQGDATNGSDLY
                     YSIYAVGFTLFMFTLVMNFISQWMTKRFREEY"
     gene            5283..6164
                     /gene="pstA"
                     /locus_tag="PTC08_001611"
     CDS             5283..6164
                     /gene="pstA"
                     /locus_tag="PTC08_001611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease PstA"
                     /protein_id="HDK5683116.1"
                     /translation="MMNLVDQKHVEAQLSGRLTKNKVFKTIFFMCTLLGLIVLAILII
                     DILRKGLPVMSTDFFTNFSSSSASSAGVKGALIGTLWLMMTLIPIALVLGVGSAIYLE
                     EYAKDNAFTKFIRVNISNLASVPSIVYGLLGATIFVALLQLGNSVIAAALTLALLILP
                     VIIVASQEAIRSVPQSVKEASYGLGANKWQTIQQVVLPAAIPGIITGVILAISRAIGE
                     TAPLVAIGIPTILLRTPNSILDSFQTLPLQIYDWARKPGIDFQALSSAAIIVLLAILL
                     ILNTIAVIIRNKYSNKY"
     gene            6182..7024
                     /locus_tag="PTC08_001612"
     CDS             6182..7024
                     /locus_tag="PTC08_001612"
                     /EC_number="7.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein"
                     /protein_id="HDK5683117.1"
                     /translation="MTEIQTLERETKMVHQKQQIHTQLQSEQNHPIVYSTQNLDLWYG
                     EQHSLKNINLDIYEKNVTAIIGPSGSGKSTYVKALNRMVELVPFVKTSGKIFYREQNI
                     FDKRYPVEQLRTQVGMVFQQPNPFPKSIYDNITYGPRIHGIKDKKILDEIVEKSLKGA
                     AIWDELKDRLNQNAYSLSGGQQQRVCIARCLAIEPDVILMDEPTSALDPISTLKVEEL
                     IQDLKKDYSIIIVTHNMQQAARVSDKTAFFLNGYVNEYDDTDKIFSNPSDKQTEDYIS
                     GRFG"
     gene            7026..7676
                     /gene="phoU"
                     /locus_tag="PTC08_001613"
     CDS             7026..7676
                     /gene="phoU"
                     /locus_tag="PTC08_001613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate signaling complex protein PhoU"
                     /protein_id="HDK5683118.1"
                     /translation="MTVIRKRYEDQLNDLLKDLRALGLHTYSMLQKSIKVLSDEEITH
                     ARQIVKSDRKINQMEYDINEKVVMLITRQQPIAKDLRMMIATLKIASEFERIGDNAAN
                     IAKIRTRAQITDHYIMTRLETMGTLALLMLQDLYDATKNDDLDLVKEIIERDIDIDDL
                     YKQIINTSYLIDNDPFVAGQAHLVARYLERIGDHVVNIAEHLYYFITGDRYESYMN"
     gene            7748..7897
                     /gene="rpmG"
                     /locus_tag="PTC08_001614"
     CDS             7748..7897
                     /gene="rpmG"
                     /locus_tag="PTC08_001614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001265708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HDK5683119.1"
                     /translation="MRVNVTLACTDCGDRNYITTKNKRTNPERIEMKKFCARENKQTL
                     HRETK"
     gene            8047..8586
                     /locus_tag="PTC08_001615"
     CDS             8047..8586
                     /locus_tag="PTC08_001615"
                     /EC_number="6.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HDK5683120.1"
                     /translation="MTKKALRQATLRKMKMLQTEQKKAADRWLFEQLIQHPKYQQAKQ
                     LGLVLSMSHEVATDAIIRHAINEGKTVYVPTTDYEKKVMVFQQFTTFDQLATDDKGIR
                     YIQDDSPVQNDLDLVIVPGVVFNQDGYRIGYGGGYFDRYLSQYEPTNLSLIYDIQLNE
                     IVDIEPHDYPVSELIIAKT"
     gene            8605..10044
                     /locus_tag="PTC08_001616"
     CDS             8605..10044
                     /locus_tag="PTC08_001616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HDK5683121.1"
                     /translation="MFEEKHLWQTSFLWMRYLNYDCVHYEKDKNEVWLAHKKRQHVVI
                     FKQGTFTTQELDFDKDRIVEHQKQIAEFLGYDIKRYDVYVLTDKSFNTVNFNVHEPLQ
                     VQFHSIHNVKALRNTTTHPIIKRKLGQKDSKSLKEYQKRVLNQNIVEKAMYRFTPITY
                     AVVAINVLIWLIVTWFTPHHTDYEIINLGALAHFNVVHGEWYRLITSMFLHIEFQHLL
                     LNMLSLFIFGKLVEAFIGPLKMLGTYILSGIIGNLISLALITTSLSLGASGAIFGLMG
                     ALIALMIISRRFDQKVILQMVIAVVVMASLTLLIQNVNVVAHLGGLLGGVLVVYSGYF
                     FNQNRLYFYILLGISIVILTLICIKIFMTSDTNIYNQIIQREMHDGQYTEAKDMIKQT
                     YQNGYADDVTYYLSGIIIATQDSKAEAMAEWERGLKYFPNSPTLNFHMAIANRSLGDD
                     KQAKSYIQKAIKASPNNQEYQNLKKELDD"
     gene            10046..>10163
                     /locus_tag="PTC08_001617"
     CDS             10046..>10163
                     /locus_tag="PTC08_001617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF910 family protein"
                     /protein_id="HDK5683122.1"
                     /translation="MQTQLNTFYDVLQLLKKFGFIIYFDNKGDMLEMIEQEIQ"
BASE COUNT         3516 a         1744 c         1918 g         2985 t
ORIGIN      
        1 tcctttaagc aaattgattg attaaaggta caaagttgat acaataaata tggaatcaaa
       61 tttaggagga tgattaatta tggcttttga actaccaaaa ttaccttatt catatgatgc
      121 attagaacca cacattgata aagaaactat ggaaatccat catagcaagc atcataacac
      181 ttatgtaaca aaattaaatg ctgctgttga aggtactgaa tttgaaaata aatcattaga
      241 agatttaatc gcaaacttag acagcgtacc tgaaaactta cgtacagcag ttcgtaataa
      301 tggtggcggt cacttaaatc actctattta ctggcaaatc ttagcaccta actcagaaga
      361 aaaaggtgaa gttgtagata aaattaaaga acaatggggt tctttagacg aattcaaaag
      421 cgaatttgca gacaaagcag ctggccgttt cggttcaggt tgggcttggc ttgttgttaa
      481 caacggtaaa ttagaaatcg ttacaactgc aaaccaagat agtccgttaa ctgatggttt
      541 aacaccaatc ttagcgttag acgtatggga acatgcgtac taccttaaat tccaaaacaa
      601 acgtccagac tacattagca cattctggaa cgttgtaaac tgggaaaaag ttgacgaatt
      661 atacaaagct gcaaaataat atttagcttt tacaattcaa atgtaaaatt agtgtttgag
      721 gctaggcaat gtgatattgc ttagtctctt tttggtttaa acgctcactg atctaaatat
      781 ccctcgtcat gtctgttgtg ttgaatatat aactagtaga gaaaaatagc cacatcattc
      841 acacgattga acgccattgg atttaaaaac atacggtgaa ttttttgttt gatccatcac
      901 aaaatattag caaaaacgat gtatttcata tatcatttta aagagaacga tgtgaataga
      961 ggtcggttgt attgttaaaa cgattaaaag aaaaaacaaa tgacgagaag atgcgtcatc
     1021 atatgaacca acggataaac tttatatttg cgatcatcat ttttgcgttt gtcgcgattg
     1081 tattaagatt aggttattta caaatcgctc aaggctcaca gtataatcaa atgattcgtg
     1141 aaagtgagaa tgtgactgtg aatgaatctg tgccaagggg acgtattctt gatagaaatg
     1201 gcaatgtgat agtagacaat gcatcaaaaa aatccattac atatacacgc ggtaaaaata
     1261 ccaatcaaca agaaatactg aacacagcga agaagctttc aaaattaatt aaaatggata
     1321 cttctaaaat taccgaacgt gataaaaagg acttttggat tctaaaacat cctgataaag
     1381 cgaaagatct aatgaaaaaa gagcaacaac tgtatgaaaa tggcgatatt tctcaagaag
     1441 actatgacca gcagttgctt acaaaaattt ccgaacaaca actcgacagt ctttctaaaa
     1501 aggacttgca agtattagca atttatcgag aaatgatgca agggtctaca ttaagtccga
     1561 gaacaattaa aaaagataag gtcactgatg aagagtatgc atcagtctct caaaagttag
     1621 cggatttacc aggcattaat acagaaatgg actgggatag aaagtatccg tacggcaata
     1681 cacttcgagg cattttagga agtgtttcga cacctgaaga aggtttaccg aaagaactga
     1741 cagacgatta tctttcaaaa ggctattcac gtaatgatcg tgtaggtaaa agttaccttg
     1801 aattacaata tgaaaatgtg ctgcgcggta aaaagaaaga gatgcgctat acaacagata
     1861 aatctggcgc aattattgat tcggaagttg taaatgaagg ttcacgtggg gacgatttag
     1921 tgctcacgat agatattaag cttcaacaaa aagctgaatc atatttagaa tcacaaatta
     1981 agaaattgcg gtctgaaggc gctcaagata tggattccgc aatgatggtc gttcaagatc
     2041 ctaataatgg tgatatttta gcgatggtcg gtaaaaaaat tgcaaaagac ggcaccttaa
     2101 ccgactatga catcgggaca tttacttctc aatatgcact gggttcttca gtcaaaggag
     2161 cgacattact tgcaggttac caaaatgatg tcattcacgt tggcgataaa atggtggacg
     2221 aacctttgac atttaaaggt ggattaacca aacgttcata tttcaataaa aacggccaaa
     2281 aactgattga tgataaagaa gcgctcatgc attcttctaa cgtatacatg tttaaaacgg
     2341 ccttgaaatt agcaggactc gaatatcaac cgcatatgtc attaccaaca gatgtgacgg
     2401 caccgggtca aaaattgcgc aaaggattaa accaagttgg cctcggtgtc aaaacaggga
     2461 tcgacttacc taatgaagtg agtggtcaaa ttgaacgttt aaaagacaat cctggtaatt
     2521 atctagattt agcaattggc caatatgaca cttattcacc gctacaacta tcccaatatg
     2581 tatcgacaat cgctaataac ggttaccgta ttcaaccaca tatcggtaaa gaaattcata
     2641 aagcgacaag tgatgacgaa ttgggaccag ttaaacataa aattaatggc cacgtcctta
     2701 accgtgttaa taacacaccg gatgaaatta aagaagtcca aaaaggtttc gacatggcat
     2761 ttaataagcc acaaggtacc ggttatgcga gctttaataa aacaaaagtg cgtgcagctg
     2821 gtaaaactgg aacagccgaa gtattccaag atggggaacc acgtgttaat tcaacatata
     2881 tcggctacgc accagtagat gatcctcaac tagcgttctc tatcgtctat acgaaccaac
     2941 ctgtgccaga accttggctc aacggtgggg atttaggacg cgatgttatt aattattatt
     3001 ttgataaata agtcacacat tcataactga aaagtgttag acagggctag aacctccaaa
     3061 gcattctagc cctgtttttt actggctttg aaaatacttc aacttctaca tgacactccg
     3121 tccaaaacaa tcatcttcca cgaaactgaa ttcaatacat taaaatatat cgaacaataa
     3181 attaacgcaa actttacact tcattcattc ctaattaata aaacatttgt atccttaaat
     3241 cgtaagcaaa tcgaaagtta attctaggag gatgtttcaa tgaaaagatg gcaaacactg
     3301 ggcggtacac tgattggtgt ctcattagtt ttaggtgcat gtggtggtgc atctcaacaa
     3361 agtagtgatc aaggtgatac gaaaagttct aacgttgaag gaacagttaa agggaacggt
     3421 tcgtcaacag tagccccaat cattgaaaaa ttgaatgagg acttttcttc aagtcacgat
     3481 aaagcaacgg tagaaaatgt gacttcagga acaggcgacg gtttcaaaca attcattgca
     3541 ggtaaaactg acttctcaaa tgcatcacgt cccattaaag atgaagaaaa agaacaattg
     3601 aaggataaag ggattgatta tacagaattt aaagtagctc gagatggttt aacgattgca
     3661 gtcaacaaag ataacgactt tcttaaagag atatcactag aagatctgaa aaagatttat
     3721 tctggagaag ctaaaaaatg gtcagatgtt gatagtgatt atcctgacaa accgattaaa
     3781 gcattctctc cagaccaatc ccatggtaca tatgacttct ttactgaaga agtgatggat
     3841 gacgtggata ttcaagctga gaaaaatcaa aatacggatg tcattgtaaa atctgttcaa
     3901 gataacaaag aaggtatcgg tttcttcgca tataacttct ataaagaaaa tgagaatagc
     3961 ttaaaagcgg ttaaagtaaa aggcgatgac ggtaaagcga ttgggccaaa tcaaaaatca
     4021 attcaagatg gttcatatcc attaagcaga ccattattca tttatgcgaa caataaaaaa
     4081 ttaaaaagca atgacgtttt tgctgaattt atgaagttta cattagagaa taaaggtaaa
     4141 gcagctgaag caaaaggtgt cgattatgta gcattacctg aaaaagatta tgatgcgcaa
     4201 cttaaaaaat tagaaaagat tacgagtgaa agtaaataaa atctcacgtg ctaactatac
     4261 tgattaaaca attgaattgt aaacagtctt gttcagggtt gagtattgtc actataagat
     4321 aatgcttcaa ccctttttag aaaaggagtc agtaagatga aatcacaaaa taatattaga
     4381 gcactcattc aaaaaaagag tcatgcaggc gcatctctca gtgctaaaat catgccgata
     4441 attttagcta tcattgctgc gatatccatt ttgacaacac ttgggattgt gatcacgttg
     4501 ctcacggaaa caatcacttt tttcacacgc gtgccgttat cccatttttt acttgaaaca
     4561 gattggaatc cttttagtgc cacgcctcga tacggcattt gggcattaat cataggtact
     4621 ttaaaaatta ctctcatcgc aacaattttt gcagtacctg ttggtttagg tgccgcaatt
     4681 tatttgagcg aatacgcatc taaaaaaacg cgtaaaatca ttaaaccgat tttggaagtt
     4741 ttggcgggta ttccaacaat tgtttacggc ttttttgcac ttacgttagt gacgcctgta
     4801 ctcagaacga tttttccaag tatcggcagt tttaacgcca ttagtccagg tttggttgta
     4861 ggcgtcatga tcatcccaat gattgcaagt atgagtgaag atgccatgtc ttcagtccct
     4921 caaaaaattc gtgaaggtgc acttggcctc ggttccacga agctagaaat ggtattcaaa
     4981 gtggtcatcc ctgcagcaac atctggcatt atggcttcta ttgtattagc tatttcacga
     5041 gctattggtg aaacgatgat tgtgtcactc gcagcaggtt caagtccatc atttgatttg
     5101 tcattctcac attcaattca aacgatgaca gcctacattg ttcaagtttc acaaggggat
     5161 gcaacaaatg gctctgacct ttattacagt atttatgcag ttgggttcac attatttatg
     5221 ttcacattag tgatgaactt tatttcacaa tggatgacga aacgtttcag agaggagtat
     5281 taatgatgaa tttagtagat caaaaacatg tcgaagcaca actctctggc cgtttgacta
     5341 aaaataaagt atttaaaacc attttcttta tgtgtacatt attaggactc atcgttttag
     5401 ccattcttat tattgatatt ttaagaaaag ggctaccagt catgagcact gactttttta
     5461 caaacttttc ttcatcatca gcaagttcag ctggggtgaa aggggcttta atcggaacgt
     5521 tatggctcat gatgacctta attccgattg cactcgtttt aggagtaggt agtgccattt
     5581 atttagaaga atatgcaaaa gacaatgcat ttactaaatt tattcgtgtt aatatttcaa
     5641 acttagcttc ggttccttca atcgtttatg gtttattggg cgcaacgatt tttgtggcgt
     5701 tactacaatt agggaattcg gttatagccg ctgcattaac gctcgcatta cttattttac
     5761 ctgtcattat tgtcgctagc caagaagcca ttcgctctgt accgcaatca gtaaaagaag
     5821 catcttatgg gttaggtgcg aataagtggc aaacgataca acaagtcgtg ttacccgcag
     5881 cgattcccgg cattattact ggtgttattt tagccatttc acgggctatt ggagaaacag
     5941 caccattagt tgcgattggc attccaacga ttctattacg cacgccaaac agtattttag
     6001 attcattcca aaccttacct ttacaaatat atgattgggc acgtaaacca ggtattgatt
     6061 tccaagcgtt atcatcagct gctattattg tattactcgc cattctactt attttaaata
     6121 caattgcagt cattattcgg aacaaatatt ctaacaagta ttaatgaaat gagggttagt
     6181 catgaccgaa attcaaacat tagaaagaga aactaaaatg gttcatcaaa agcaacaaat
     6241 tcatacacaa cttcaatcag aacaaaatca tcctatcgta tattctactc aaaacttaga
     6301 tttatggtat ggagaacaac attctttaaa aaatattaac ttagacattt acgaaaagaa
     6361 tgtcactgcg attattgggc cgtccggttc tggtaaatca acttatgtga aagcactgaa
     6421 tcgcatggta gaacttgtac cttttgtaaa aacgtcaggc aaaatctttt atcgagaaca
     6481 aaatattttc gataaacgtt atccggttga acagttacgg acacaagttg ggatggtttt
     6541 tcaacagccg aatccatttc caaaatccat ttatgacaac attacttacg ggccgcgcat
     6601 tcacggcatt aaagataaaa aaatattaga tgaaattgtt gaaaaatcac ttaaaggagc
     6661 ggcgatttgg gatgaattaa aagaccgtct gaaccaaaat gcatatagcc tttctggtgg
     6721 acaacagcag cgtgtatgta ttgcgcggtg tttagcaatt gagccggatg tcattttaat
     6781 ggatgaaccg acatcagccc ttgaccctat ttcgacgtta aaagtggaag aattgattca
     6841 agatttaaag aaagattatt ccatcattat tgtcacacac aatatgcaac aagcggcacg
     6901 tgtatctgac aaaacggcct ttttcttaaa tggttacgtg aatgaatacg atgatacgga
     6961 taagattttt tcaaaccctt ctgataagca aacagaagat tatatttcag gacgttttgg
     7021 ttaatatgac agtcattaga aaacgttatg aagaccaact caatgattta ttaaaagatt
     7081 tacgtgcttt aggcttgcac acgtacagta tgcttcaaaa atccataaaa gtcttatctg
     7141 atgaagagat tacacatgca cgacaaattg tgaaaagcga tagaaaaatc aatcaaatgg
     7201 aatatgatat taacgaaaaa gttgtaatgt tgattactcg ccaacaaccg attgcgaaag
     7261 atttaagaat gatgattgca acacttaaaa tcgcatctga atttgaacgt ataggagata
     7321 atgctgcaaa tatcgctaaa attagaacgc gtgcacaaat tactgaccac tatattatga
     7381 cacggcttga aacaatgggt accttggcgt tgttgatgct gcaagattta tatgacgcga
     7441 ctaaaaacga tgatttagat cttgtgaaag aaattataga acgagatatt gacattgatg
     7501 atttatataa gcaaattatt aatacgagtt acttaatcga taatgatccg tttgttgcgg
     7561 ggcaggcgca tcttgttgca cgatatttag aacgcattgg tgatcacgtt gtcaatattg
     7621 ccgaacattt atattatttt attaccggag atcgttatga atcttatatg aattaacgct
     7681 tcccaatttt catttaaaat ggtatgataa taaggtcgta ttttaatgat agatgaggag
     7741 ggttaatatg cgcgtaaacg ttactttagc atgtacagac tgtggagatc gtaactacat
     7801 cactactaaa aacaaacgta ctaatcctga acgtattgaa atgaaaaaat tctgtgcacg
     7861 tgaaaacaaa caaacattac accgcgaaac aaaataattg tttcaatctt gggctaggac
     7921 attacgttct agccattttt tatactctta tttcaaaaca ctgtgcgtaa attcgagacg
     7981 atctttccat gacacaacgc ccaatgcacg atataatagg ttgagatgtg agggagtgaa
     8041 aatgaaatga ctaagaaggc attgcgacaa gcgacattac gaaaaatgaa aatgcttcaa
     8101 actgaacaaa agaaagcagc agatcgttgg ttattcgaac aactcattca gcatcctaaa
     8161 tatcaacagg ccaagcaact cggcctagta ttgtcaatgt cacatgaagt tgcgactgat
     8221 gccattattc ggcatgcaat caacgaaggc aaaaccgttt atgtgcctac aacagattat
     8281 gaaaaaaaag taatggtgtt tcaacagttc acaacatttg atcagttagc aacagacgac
     8341 aaggggattc gctatattca agatgatagt ccggtgcaaa acgacttaga tttagtcata
     8401 gtgcctggcg ttgtattcaa tcaagacggt tatcgtattg gttatggtgg cggttatttt
     8461 gatcgctatc tatcacaata tgagcctacc aatttaagtc tcatttatga tatacaactc
     8521 aatgaaatag tggacattga acctcatgac tatcctgtgt cagaacttat tattgcaaag
     8581 acataaaaag actggaggta gcatatgttt gaagaaaaac atttatggca aacgagtttt
     8641 ctttggatgc gttatttaaa ctatgactgt gttcattacg aaaaagataa aaatgaagtt
     8701 tggcttgcgc ataaaaaaag gcaacatgtt gttattttta agcaagggac attcactacg
     8761 caagaacttg atttcgataa agatcgtatt gtagaacatc aaaaacagat tgccgagttt
     8821 ttaggatatg atattaaacg ctatgatgtt tatgtgttaa cagataaatc ttttaacaca
     8881 gtgaacttta acgtacatga accacttcaa gtgcaattcc atagtattca taatgtcaaa
     8941 gcacttcgca ataccacaac gcatcccatc atcaaacgaa aattaggtca aaaagattca
     9001 aaatcattaa aagagtacca aaagcgtgtc cttaaccaaa acatcgttga aaaagcaatg
     9061 tatcgtttta caccgattac atatgcagtt gttgcaatca atgtgttaat ttggttgatt
     9121 gttacgtggt ttacaccaca tcataccgat tatgaaatta taaatttagg tgcattggct
     9181 cactttaatg tggtccatgg ggaatggtac cgactcatta catcaatgtt tttacatatt
     9241 gaatttcaac atttattatt aaacatgttg tcactcttta tcttcggcaa acttgtggaa
     9301 gcatttatcg gtcctctgaa aatgttaggg acgtatatat tatcaggtat tatcggcaac
     9361 ctgatttcac ttgctttaat cacaacgagt ttatcattag gtgcaagtgg tgcgattttc
     9421 ggtttaatgg gtgctttaat tgcgctcatg attattagtc gtcgctttga tcaaaaagtg
     9481 attttgcaaa tggtaatcgc tgttgtggtc atggcgagct taacacttct gattcaaaac
     9541 gtgaatgtcg ttgcgcattt aggggggcta cttggcggtg tactcgtcgt ttattcaggt
     9601 tattttttca accaaaaccg tctttatttt tatattttac tcggtatttc aatcgtgata
     9661 ctaacactga tttgtattaa aatctttatg acatctgata caaatattta taatcaaatt
     9721 attcaacgtg aaatgcatga tgggcaatat accgaagcga aagatatgat taaacaaacg
     9781 tatcaaaatg gctatgcaga tgatgtgact tattacttat caggtattat tattgctaca
     9841 caggattcta aagctgaagc aatggctgaa tgggagcggg gtctgaaata tttccccaac
     9901 tctccaacgt taaattttca tatggccatt gcgaatcgct cattaggaga tgataaacaa
     9961 gccaaatctt atatccagaa agccattaaa gcaagcccaa acaatcaaga atatcagaat
    10021 ttgaaaaaag aactggatga ttaatatgca aacgcaattg aatacgtttt atgatgtact
    10081 ccaactatta aaaaaatttg gctttattat ttatttcgat aacaaaggtg atatgctaga
    10141 aatgattgaa caagaaattc aaa
//
LOCUS       DANHOL010000090        10133 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.090, whole genome shotgun sequence.
ACCESSION   DANHOL010000090 DANHOL010000000
VERSION     DANHOL010000090.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 10133)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10133)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10133
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.090"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            224..418
                     /locus_tag="PTC08_001618"
     CDS             224..418
                     /locus_tag="PTC08_001618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003234072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase TatA/TatE family
                     subunit"
                     /protein_id="HDK5683123.1"
                     /translation="MASPTGLIIISVIALILFGPKKLPQFGRAIGSTLREFKSATEHI
                     TEDDESLDTPITKSTKQEHK"
     gene            447..1118
                     /gene="tatC"
                     /locus_tag="PTC08_001619"
     CDS             447..1118
                     /gene="tatC"
                     /locus_tag="PTC08_001619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001807913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatC"
                     /protein_id="HDK5683124.1"
                     /translation="MRARLIKIGMTFDLVLIVVYISSHWWIQPFIHAIAQNGVQLHAF
                     SFTEMIQIYIMIILFCTLCIVSPVIFYQLWAFIAPGLKDIERQFVYKYSLISVLLFLT
                     GIALAYWLIFPLIIQFSFNLSQLMSIDPVIGFKQYLTELLRWLLFFGIIFQLPILFIG
                     LAKFELIDATMLRPYRKYVYFGCLVLASLIAPPDVLLNILLSFPLILLFELSMFIIRF
                     TKPYH"
     gene            complement(1161..2819)
                     /locus_tag="PTC08_001620"
     CDS             complement(1161..2819)
                     /locus_tag="PTC08_001620"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HDK5683125.1"
                     /translation="MNIIDQVKQTLIQEIEKSIQQANIVESIPEIKIEIPKDTKNGDY
                     ATNIAMVLTKLAKRNPREIAQLIVDHLDTEAAHVKKIDIAGPGFINFYLDSSYLNAVI
                     DQALELDTQFGRVAESKNKKILVEYVSANPTGDLHIGHARNAAVGDTLCNILDAAGYD
                     VTREYYINDAGNQITNLAKSIEARYLQHLGQKAEMPADGYHGQDIKNIGADLAKKQPN
                     LMDLSDDERLKTFRQLGVDYEMAKLKQDLADFNIHFDNWFSETSLYEKGEIKAVLERM
                     KENGYTYEQDGATWLRTTDFKDDKDRVLIKKDGTYTYFLPDIAYHYDKFQRGNDNLIN
                     LFGADHHGYINRLKASLETFGVDSDRLEIQIMQMVRLMQDGEEVKMSKRTGNAITLRE
                     IMDEVGIDAARYFLTMRSADTHFDFDMALAKEQSQDNPVYYAQYAHARICSILRQAEA
                     QGYQVEKAADYQTITNDKAIELLKKVAEFEPMIEGAAEARAPHRVTNYIQDLAAHFHK
                     FYNAEKVLTEDQAKTKAHLALIDAVRITLRNALQLVGVTAPEQM"
     gene            complement(2821..3231)
                     /locus_tag="PTC08_001621"
     CDS             complement(2821..3231)
                     /locus_tag="PTC08_001621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000359087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1934 family protein"
                     /protein_id="HDK5683126.1"
                     /translation="MEHNVKIDIHQIVKRDAEKEHFSHQTTGQWLKKGEDWIRYQEQI
                     EDATVNVTVKLTDESVKLIRKGDIHMNMHFIEGQDTTTFYELPHGKMVLTVHTMSILH
                     FVTSDGGKLKVHYALFQGDEKMGTYQYEMKYKEI"
     gene            complement(3447..3962)
                     /locus_tag="PTC08_001622"
     CDS             complement(3447..3962)
                     /locus_tag="PTC08_001622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YwhD family protein"
                     /protein_id="HDK5683127.1"
                     /translation="MAEKKGFNFNIIKNDPLDGHKGTNIGSISLDNIAPVFIDIEAQE
                     AFIDIGAMHARAAVERGVKWITDKETVDVEGAKAYWLCWVTTERGEQGPYYAGVTAAY
                     LLVNKTIRRGYKSMPEHVNMMDKSMKHKVIVDHIGAENRQILADFLKTHNPDMWANAS
                     EALHQAFEDTK"
     gene            complement(4040..5338)
                     /locus_tag="PTC08_001623"
     CDS             complement(4040..5338)
                     /locus_tag="PTC08_001623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002487628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HDK5683128.1"
                     /translation="MTETAYVTRKLSEEKVFKDPIHRYIHVQDQLIWDLIKTKEFQRL
                     RRIKQLGTLNLAFHTAEHSRFGHSLGVYEIVRRMIDETFKGRPEWDNADRPLAMCAAL
                     LHDLGHGPFSHSFEKIFNTDHEAYTQAIIMGDTEVNVVLRRVSETFPAEVAEVINKTH
                     HNSLVVSMISSQIDADRMDYLQRDAYFTGVSYGTFDMERILRLMRPSADEVLIKESGM
                     HAVENFIMSRYQMYWQIYFHPVSRGGEVVLNHCFKRAKYLYEQGYEFNIPPRDFVPFF
                     ENRATVEEYVQLDEADVTYYLKRWIDEDDPILSDLARRFIHRDLFKFLPFDGSIITIT
                     ELRDLFEQAGIDPDYYFVSDSFSDLPYDYDRPGSNRQPIHLLQNNGGIREISSQSLII
                     SSITGIKREDYKLYYPKELIMKIEDPELKGKIVNLLNELN"
     gene            complement(5361..5840)
                     /locus_tag="PTC08_001624"
     CDS             complement(5361..5840)
                     /locus_tag="PTC08_001624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDK5683129.1"
                     /translation="MYEVRIATPDDVIGIRDVATKAWYNTYLNIYAASTVNELLAASY
                     NEEHLRKRLEEQLFMVAIEGQEVVGFANFIQGSELYLSAHYVRPHSQNKGYGRLLLEQ
                     GLAHYEGQYDAVYLEVDTKNEKGVAFYEQEGFEIIRTYEHVMYGETMNLALMKKPLS"
     gene            complement(6250..6585)
                     /locus_tag="PTC08_001625"
     CDS             complement(6250..6585)
                     /locus_tag="PTC08_001625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1450 domain-containing protein"
                     /protein_id="HDK5683130.1"
                     /translation="MKNKFLVCDDCQAVNLKTLTQKLKKLDPDAEIEVGCQSYCGPGR
                     RKTFAFVNNRPLAATTEEELMEKVQKQLQKPRDPEEEERLRKRNEERKRRKEEQDRKL
                     KEKLANRKA"
     gene            7207..7923
                     /locus_tag="PTC08_001626"
     CDS             7207..7923
                     /locus_tag="PTC08_001626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HDK5683131.1"
                     /translation="MKKLCWLFLFFLPCFLLIPFNTAYAKGEQKPVPDTVADPHSKYS
                     AYYQVSLTRSCSAILISSTAALTARHCVGREPAKRSGTIYPGQNLDKSPFGYMNISTY
                     TPHPKYDIAIIKGTLRDQDKFYKYYIRPFTTTVRGYTDQELKGFVRQDVYSYGYPNRK
                     PAPKKVQYRSDGQIYKYVKSPAPSLSTYMPGYSGQSGSGVFKKDGQFIGIISTKTDKN
                     TANVLAFTTDIAKWINENAE"
     gene            8090..8815
                     /locus_tag="PTC08_001627"
     CDS             8090..8815
                     /locus_tag="PTC08_001627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HDK5683132.1"
                     /translation="MKKLCLLLLLFLSHFLLMPLETTHAKGKQEPVPDTVADSHSKYT
                     AYFQTNSGRYCTAILISSTAALTARHCVGREPAERVGTIYPGQNGDKRPFGYMNIRTY
                     IPNPNPNYDIALLKGIEKDQDRFYKYYIKPFTTTVRGYTDEELSRFVRNDVYSYGYPN
                     RKSVPEGLQYRSDGQIYKHRTTPKPYLLTDMPAGYGGQSGSGVFKKDGQFIGIIITST
                     KSKTANVLPFTKDIAKWINKNAS"
     gene            9138..9860
                     /locus_tag="PTC08_001628"
     CDS             9138..9860
                     /locus_tag="PTC08_001628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like serine protease"
                     /protein_id="HDK5683133.1"
                     /translation="MKKLCLMLLMTFSLIPFPLSNTTFAKGKQTPITDTVADRHSIYS
                     ALYKTANGRFCTAILISSSAALTAKHCGGLQPAKRSGTIYPGANENKTPFGYMNIRTY
                     TPHPNPKYDIAILKGTERDQDEFYKYYIRKFSTTVKGYTDEEFRAFMGQDAYAYGYPH
                     GKQFRNNVQYRSDGKITSYKTKPIPYLLTDMPAFSGQSGSGVFKKDGKFLGIMVTRTK
                     KNTANILPFTESIAKWINENAK"
BASE COUNT         2994 a         2135 c         1678 g         3326 t
ORIGIN      
        1 gtttatcact atatacgatt tttagaacat tattcttcat atatcaaggg cttcgttgta
       61 gagggtgaca tacatacaag attttataat ggcaaataat ttttacaatt gataggactt
      121 tattatatca tggattcata tgatgacttg tatcgctaaa ggtgattaga aaaattttaa
      181 gagaagaagg atttttatgc tagaaggtac gtttgtttta ggtatggcaa gtccaacagg
      241 cctcattatc attagtgtca ttgcgctcat tttgtttgga ccgaaaaagt tacctcaatt
      301 tggtcgtgca atcggttcaa cgttacgcga atttaaatct gccacagaac atattacaga
      361 agatgacgaa tcattagaca cacccattac aaaatctaca aaacaagaac acaaatgagt
      421 tatcgttact caatcatttt aacgaactga gagcacggtt aatcaaaata ggcatgacgt
      481 ttgacctcgt actcattgta gtctacattt catcacattg gtggatccag ccattcatac
      541 acgctatagc tcaaaatggc gtccagttac atgcctttag ttttaccgaa atgatacaga
      601 tttacattat gattatctta ttttgtacat tgtgtatcgt ttctcccgtg attttttatc
      661 aattgtgggc atttatcgcg ccaggtttaa aagacattga gcgccaattc gtttataagt
      721 atagcctcat ttccgtgctg ctgtttttga caggtatcgc actggcatac tggctcattt
      781 ttccacttat cattcagttt tcattcaatt tgtcacaatt aatgtcgatt gatccagtga
      841 ttggatttaa acaatattta accgaactac tgcgatggct actcttcttt ggcattattt
      901 ttcaattgcc gattttgttt atcggtttag ccaaattcga gctgattgat gcgaccatgt
      961 tacggcctta tcgtaagtat gtgtattttg ggtgcttggt cttggccagc ttgattgcac
     1021 cgcctgatgt gctgttaaat attttactgt cctttccttt gatattattg ttcgaactga
     1081 gtatgtttat cattcgattt acgaaacctt atcattaaaa aaggcaactt cagcgcgata
     1141 ctgaggttgc cttttgtaat ttacatttgt tctggtgcag tgacaccgac taattgtaat
     1201 gcattgcgta acgtaatacg tacagcatca attaatgcca aatgtgcttt tgttttcgct
     1261 tgatcttctg ttaatacttt ttctgcattg taaaacttgt ggaagtgtgc ggctaagtct
     1321 tgaatataat tcgtcacacg atgcggtgct ctggcttctg ctgcgccttc aatcatcggc
     1381 tcgaattccg cgactttctt caacaattca atggccttat cgttagtaat tgtttgataa
     1441 tcggcagctt tttcgacttg atacccctgt gcttctgctt gacgtaaaat cgaacaaata
     1501 cgcgcatgtg catattgtgc ataataaacc gggttgtctt gagactgttc tttcgcaagt
     1561 gccatatcaa aatcgaaatg tgtatccgca ctgcgcatcg tcaagaagta acgcgccgca
     1621 tcaataccga cttcatccat aatttctctt aatgtaatcg cgttacctgt acgtttactc
     1681 atcttcactt cttcgccatc ttgcattaaa cgtaccattt gcataatttg aatttctaga
     1741 cgatcgctat ccacaccaaa cgtttcgagt gacgctttca gacggttaat atagccgtga
     1801 tgatccgcac cgaataaatt gatcaaattg tcgttaccac gttggaactt atcgtagtgg
     1861 tacgcaatat ctggtaaaaa gtatgtgtac gtgccatctt ttttaattaa cacacggtct
     1921 ttgtcatctt tgaaatctgt cgtacgtaac cacgtcgcac cgtcttgttc atacgtgtaa
     1981 ccattttctt tcatacgttc taaaacagct ttaatctcac ctttttcata taaagatgtt
     2041 tcactaaacc aattatcgaa atgaatgttg aaatcagcaa ggtcttgttt taattttgcc
     2101 atctcataat ctacaccgag ttgtctaaat gttttcagac gttcgtcatc cgataaatcc
     2161 attaagttcg gctgtttttt agctaaatcc gcaccgatat ttttaatgtc ttgaccgtga
     2221 tacccgtctg ctggcatttc tgctttttga cctaaatgct gtaagtaacg tgcttcgatc
     2281 gattttgcta agttcgtaat ttggttgcct gcatcgttaa tgtaatattc tcttgtgacg
     2341 tcataacctg ctgcatctaa aatattgcat aacgtgtccc ctactgcggc gttacgggca
     2401 tgtccgatat gtaagtcgcc agtcgggttc gctgagacat attccactaa tattttttta
     2461 tttttcgatt ctgctacacg accaaattgc gtatctagct ctaaagcttg atcgatgacc
     2521 gcatttaaat aacttgaatc aaggtaaaag ttaataaatc ctggtcccgc aatatcgatt
     2581 tttttaacat gtgccgcttc agtatctaaa tggtccacaa tcagttgcgc gatttctctc
     2641 gggttacgtt tcgcaagttt cgtcaacacc atcgcaatat tggtcgcata gtctccattt
     2701 ttcgtatctt ttggaatttc gattttaatt tcaggaatcg actcaacaat attcgcttgt
     2761 tgaatacttt tttcgatttc ttgaatcaat gtctgtttca cttgatcaat aatattcatc
     2821 ttatatctcc ttatatttca tttcgtattg ataggtgccc attttttcat caccttggaa
     2881 taatgcataa tgcactttta atttaccgcc atccgatgtc acaaaatgaa ggatgctcat
     2941 cgtatgcacc gtcaacacca tttttccatg aggcaattcg taaaaagtgg tcgtatcttg
     3001 cccttcgata aaatgcatgt tcatatggat atcgccttta cgaatcaatt tgacactctc
     3061 atctgtcagt ttaaccgtca cattgacagt cgcgtcttca atttgttctt ggtaacgaat
     3121 ccaatcctca ccttttttca accattggcc cgttgtttga tgtgaaaaat gctctttttc
     3181 cgcatctctt ttcacaattt gatggatatc aattttgacg ttatgctcca tggtcatttt
     3241 caccttactt catcaaataa tacttgccat tatatcacat ctcacatgta ctgaacgtat
     3301 aaaatttcac atttgtcgcg tcatttgata cgaaatcata acaaaaatgc atgaggtgac
     3361 ccccttctaa aatcactccg cgtaagttat ttagaaatca agtcaccttt cggccggtac
     3421 gacgtaaact acaatgaagt ctcaccttat ttcgtatctt caaacgcttg gtgtaacgct
     3481 tctgacgcat tagcccacat gtcaggattg tgcgttttaa gaaaatctgc taatatttga
     3541 cggttttctg caccaatatg atccacaatg actttatgtt tcatagattt atccatcata
     3601 ttgacatgtt ctggcatact tttatagcca cgacgaatcg ttttattcac taataaatac
     3661 gccgcagtca ccccagcata gtaaggacct tgttcaccgc gttctgttgt cacccaacat
     3721 agccagtacg cttttgcccc ttctacatcg acagtctctt tatcagtaat ccatttcaca
     3781 ccacgttcta ctgctgcacg tgcatgcata gcaccaatgt ctataaaggc ctcttgcgct
     3841 tcgatatcga taaaaacggg cgcaatatta tcgagactga tcgaaccaat atttgtccct
     3901 ttatgaccat cgagtggatc gttcttgata atattaaagt taaacccttt cttctcagcc
     3961 atctcataat acctccaaat cttttcatac ttgttaaaat gtatcgttca agttgtacat
     4021 gtattcaaca ctcaaacggt taattcagtt catttaataa gttaacgatt ttccctttaa
     4081 gctctggatc ttcaattttc ataatcagtt ctttcgggta atacaattta taatcttcac
     4141 gtttaatccc cgtaatactt gaaataatta acgattgact actaatttca cggatgccac
     4201 cattattttg tagtaagtgg atcggttgtc gattggaacc tgggcgatcg taatcgtaag
     4261 gtaaatcgga aaatgaatca ctcacaaaat agtaatccgg atcaatgcct gcttgttcaa
     4321 ataaatcacg aagctccgta atcgtaataa ttgagccatc aaacggtaaa aatttaaata
     4381 aatcgcgatg aataaagcgg cgtgccaaat cacttaaaat cgggtcgtct tcatcaatcc
     4441 aacgtttcaa ataatacgtc acatccgctt catctaattg gacgtattct tcaacagtcg
     4501 cacgattttc gaaaaacggc acaaaatcac gcggtggaat attaaattca taaccttgtt
     4561 cgtacaaata tttcgcacgt ttaaaacaat gattcaagac aacttcacca ccacggctca
     4621 ccggatggaa ataaatttgc caatacattt gataacggct cataataaag ttttcaaccg
     4681 catgcatccc actctcttta atcaacactt catctgcaga agggcgcatc agccgcaata
     4741 tccgttccat atcaaacgta ccataagaca cccctgtaaa atatgcatct cgttgtaaat
     4801 aatccatacg gtccgcatca atttgtgacg aaatcatcga cacgaccaat gaattgtgat
     4861 gtgttttatt tatcacttct gccacttcag ccggaaatgt ttcactcaca cggcgcaata
     4921 ccacattcac ttccgtatcg cccataataa tcgcttgggt ataggcttcg tgatcagtat
     4981 taaaaatctt ttcgaaacta tgtgaaaacg ggccgtgtcc taaatcatgc aacaacgccg
     5041 cacacatcgc gagtggacga tcggcattat cccactctgg gcgaccttta aacgtctcat
     5101 caatcatgcg acggacaatt tcgtacacac cgagggaatg accgaaacga ctatgttcag
     5161 cagtgtgaaa agctaaattc aatgtcccga gctgtttaat ccgacgcaac cgttgaaatt
     5221 cttttgtttt gattaaatcc caaatcagct gatcttgaac gtgaatatag cgatgaatgg
     5281 gatctttgaa cactttctct tctgataact tacgtgtaac ataagctgtt tctgtcaatc
     5341 aaaaccctcc ttgttcgcat ttaacttaat ggctttttca tgagtgcgag attcatcgtt
     5401 tcaccgtaca tcacatgttc gtatgtacga atgatttcaa agccttcttg ttcataaaat
     5461 gcgacacctt tttcattttt tgtatcgact tctaaataga ccgcatcata ttgaccttca
     5521 taatgtgcga ggccttgttc taaaagtaag cgaccgtacc ctttattttg agaatgtggg
     5581 cgtacgtaat gcgcagacaa atacagctca ctaccttgaa taaaattcgc aaaaccgacc
     5641 acttcttgcc cttcaatcgc aaccatgaat aattgttctt ctaatcgttt acgcaaatgc
     5701 tcttcgttat atgaagctgc gaggagttca ttcacagttg aagctgcata aatatttaag
     5761 tacgtattgt accacgcttt tgtcgcaaca tcgcggatac ctattacatc atctggtgta
     5821 gcaattctta cttcatacat tccacatttc gctccttatt gcttgctaga atacttttta
     5881 ttatatcata aatcaaatcc taaacagcgc gtaaaatgct tcagattgca agtgctttca
     5941 agtcgtgtag cattgaatgt tgatacatag ttccacaaca cctgtataga aaattgtcgc
     6001 tactttactt ttcattgcat tttgcttttc attattaatg attgtggata tttcatgcgc
     6061 tttttacctc aattcgaatt tttttcaatt tcttcatttt agattctttt tcccttagtc
     6121 ccaattttat atccagtctg ttcatttttt gatgattaaa cgagccttac gcataaaaaa
     6181 agagacgtgc cttttcaaaa ttaaaggggc gtctctttgc ctatgaatat attgaataag
     6241 taattggact tatgctttac gatttgccaa tttctctttt aatttacggt cttgctcttc
     6301 tttccgacgc tttcgctctt cattacgctt tctcaaacgc tcttcttctt caggatcgcg
     6361 tggcttttga agctgcttct gaactttttc catcaactct tcttcagtcg ttgcagcaag
     6421 tggccggtta ttaacaaacg caaatgtttt acgtcgacct ggtccacaat atgattggca
     6481 acctacttca atctcagcgt ctgggtctag ctttttcagt ttttgcgtca acgttttgag
     6541 attcactgct tggcaatcat cgcaaaccaa aaatttattt ttcacctcga cgtcccacct
     6601 ctcaattttt taactctatt cattttactc ttttttctca atttttcaag gtagaaatat
     6661 tcaaatagca ctacgatttg ttaaaataca cacccttttt ccacaaacct cattagtcaa
     6721 ttgccataaa tttatgcttc aagtaggtcg tgcttgccac acatcgatgt tcaatacgtt
     6781 ctcatctatc tgtcattgta cgctttttga tgcattacta aaggtaaaca aacgtctgct
     6841 ccaaacatag cggtagacgc tcacagtaaa tatactgcgc attcttgcag atatgtctat
     6901 ttttgatgga caatcgggat ttagtgtctt caaaaagata acccatttat cggaattatc
     6961 gtttcaagaa accacaatta tgtaaccaat gtactcgcat ttacctaaga cattgcagca
     7021 tggattaata aaaatgtgaa atagcacctt actattttat tgcacttcaa aagaggttgg
     7081 aactcaatgt tcagcccctt tctcactttg tactttcatt ccaaaattcc gcatacgtat
     7141 tatttcataa aattttaatt attatacttt aatatattaa atatcttata tcaaaggtgt
     7201 gatcatatga aaaagttatg ttggttattc ttattcttcc tcccatgttt tcttcttata
     7261 ccttttaaca cagcttacgc caaaggggaa caaaagccgg tgccagatac tgttgcagat
     7321 ccgcacagta aatatagtgc atattatcaa gtgagcctca ctcgtagttg ttcagccatc
     7381 cttatttcgt caactgccgc actcaccgct agacattgtg taggacgtga acctgcaaaa
     7441 agaagcggca caatttatcc aggacaaaat ttagataaaa gtccatttgg ttatatgaat
     7501 attagcacct acacaccaca tccaaagtat gatattgcga tcatcaaagg cactttaaga
     7561 gatcaagata aattttataa atactatatt agacctttca cgacgacagt tcgaggttac
     7621 actgatcaag aactaaaagg ttttgttcgt caagatgttt actcctatgg ttaccctaac
     7681 aggaagccag ctcctaagaa agtacaatac cgcagcgatg gtcaaattta taagtatgta
     7741 aaatcaccag cacctagcct ttcaacgtat atgcctggtt atagcggaca atcagggtct
     7801 ggcgttttca aaaaagatgg tcaatttatt ggaattatca gcacaaaaac agacaagaac
     7861 accgcaaatg tacttgcttt tactacagat attgccaaat ggattaacga aaatgcggaa
     7921 tagtgcttta tattaccttt aactttcacc caaaagaggt tggaactcaa tgttcggccc
     7981 ctttctcatt ttgtactttc atctcaaaac ttcaaagaga gaacatttca taaaattcta
     8041 attattatga tttaatatgt taaatatctt atttcaaagg tgtgattata tgaaaaagct
     8101 atgtttgtta ctcttattat tcctctcaca ttttctgctg atgcctttag aaacgactca
     8161 cgccaagggg aaacaagaac ccgtgccaga tacagttgca gattctcaca gtaagtatac
     8221 tgcgtacttt caaactaatt caggacgcta ttgtacagcc atcctaatat catcaactgc
     8281 cgcactcacc gctagacact gtgtaggacg tgaacctgca gaaagagtgg gtacaatata
     8341 tcctgggcaa aatggcgaca aaaggccatt tggttatatg aatattagga cctacattcc
     8401 aaatccaaat ccaaattatg atatcgcgtt actcaaaggc attgaaaaag accaagatag
     8461 attctacaaa tactatatta aacctttcac gacgacagtt cgagggtaca cagacgaaga
     8521 gttaagtcgt ttcgttcgaa atgatgtata ctcctatggt tatcctaaca ggaagtcagt
     8581 gcctgaagga ttacaatacc gtagcgatgg tcaaatttat aaacatagaa caactccaaa
     8641 accttacctt ctcacagaca tgcctgctgg ctatggcggt caatcggggt cgggggtttt
     8701 caaaaaagat ggtcaattta ttggaattat catcacaagt acaaagagta aaactgcgaa
     8761 tgtgctccct ttcacaaaag acattgcaaa atggattaat aaaaatgcga gctagttcct
     8821 tgtagtattt tagacgcaca caaaacaaga ggctggtcat ttggttgcta gcctcttaac
     8881 ttatattgcg ttttagctgt aaaggagtct atagccatct cctttcaaaa ttgattccgt
     8941 acaaacccat gagtcaatta caacaaatct tccctttaga tcgtcaaagc atgtcataca
     9001 ttatcgttta gtacgttatc attcatttgc aattaggctt tttgactgaa ctcggtagga
     9061 aattaccatt gaacaaatga tacgtatttt ttatgattgt atagatttat aaaataataa
     9121 aataaatgtg tgatcatatg aagaaattat gtttaatgct cttaatgact ttttcattaa
     9181 ttccatttcc cctttctaat actacttttg ccaagggaaa acaaacgcct attacagata
     9241 cagtggcaga ccgtcacagt atatattctg cattatacaa aactgctaac gggcgctttt
     9301 gcacagccat cctgatttca tcaagtgccg ccttaactgc aaaacattgt ggaggacttc
     9361 aacctgccaa aagaagtggc acaatctatc caggggcaaa tgaaaataaa acaccttttg
     9421 gttatatgaa tattaggacc tacacaccac atccaaatcc aaagtatgac attgctatat
     9481 taaaaggaac tgaaagagat caagatgaat tctacaaata ctatattaga aaattctcga
     9541 ctacagttaa aggttacaca gatgaagaat tcagggcgtt tatgggtcaa gatgcatacg
     9601 cttatggtta tcctcacggg aagcaatttc gtaataatgt gcaatatcgt agcgacggta
     9661 aaattacaag ttataaaaca aaaccaatac cttaccttct tacagatatg cctgcctttt
     9721 ctgggcaatc ggggtcgggc gttttcaaaa aagatggtaa atttcttgga attatggtca
     9781 caagaacaaa gaagaacact gcaaacatac tcccatttac tgaaagcatt gcaaaatgga
     9841 ttaacgaaaa tgcgaaataa tagactatag tattttaaac tcgagccaaa agaagacggc
     9901 acttagttgc tagcctcttt tttgtgtgat gtgaatttag caaggtgctt tcctcatatc
     9961 actttttgaa taagaacaat cctgtccccg ctttccaaaa aaacaattat tcaaatgact
    10021 caactttatc atttagacta ttttggaatg tcattcgtca gcgttacgca cgttgtcatc
    10081 catctgcaat tttgtatttt tcaacttaaa tccgaagaaa aaacaacata ata
//
LOCUS       DANHOL010000091         9840 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.092, whole genome shotgun sequence.
ACCESSION   DANHOL010000091 DANHOL010000000
VERSION     DANHOL010000091.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 9840)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9840)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9840
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.092"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            10..1212
                     /locus_tag="PTC08_001629"
     CDS             10..1212
                     /locus_tag="PTC08_001629"
                     /EC_number="6.3.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase"
                     /protein_id="HDK5683134.1"
                     /translation="MKDKVVLAYSGGLDTSVAVKWLIEQGYDVIACCLDVGEGKDLDL
                     VYQKALNMGAIESHVINATKEFAEDYVGYTIKGNLMYEQTYPLVSALSRPLISKKLVE
                     IAHETNAVAIAHGCTGKGNDQVRFEVAIKALDPNLKVIAPVREWGWSREEEIDYAKKH
                     NIPVPIGKASPYSIDQNLWGRSNECGVLEDPYVAPPQDAYDLTSELEDTPDTADEILI
                     TFDQGIPTHINGEYYALDDLILYLNERAGKHGIGRIDHIENRLVGIKSREVYETPGAE
                     VIIKAHQALETITLTKDVAHFKPIIEKQFAEQVYNGLWFSPLTDALKTFVDHTQKYVT
                     GEVRVKLFKGHAIVNGRKSPYTLYNEKLATYTKEDAFNQQSAVGFIDIYGLPTQVNAM
                     LHGGYANE"
     gene            1205..2596
                     /gene="argH"
                     /locus_tag="PTC08_001630"
     CDS             1205..2596
                     /gene="argH"
                     /locus_tag="PTC08_001630"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020220051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HDK5683135.1"
                     /translation="MSKKAWGGRFEERPEAWVDAFNASIHFDQKLIDEDIQGSIAHAT
                     MLAHQDILTEAESELIIQTLKDIRHDFHEGQIEFQTALEDIHLNVEHELIKRIGPVGG
                     KLHTGRSRNDQVATDMHLYTKKEVHTIIDYIHAFQQTLLQLAEQHVETIMPGYTHLQR
                     AQPISFAHHIMTYFWMLERDQTRFKESLARIDVSPLGAAALSGTTYPIDRHETQKSLG
                     FNALYENSIDAVSDRDYIVETLNNINLTMIHLSRFAEEIIFWSSEEAKFITLSDGFST
                     GSSIMPQKKNPDMAELIRGKVGRTTGHLVSLLMTLKGLPLAYNKDMQEDKEGLFDAIE
                     TIKGSLRIFDGMVATMTVNTDRLQATVRQDFSNATELADYLVTKGIPFREAHEIVGKL
                     VLWAIQHEMYLLDVPLEVYQDHHTQIEVDIYQYLQPDEAVKRRQTYGATGQDAVRHQI
                     DVAKSHFAQYHSK"
     gene            2834..3769
                     /locus_tag="PTC08_001631"
     CDS             2834..3769
                     /locus_tag="PTC08_001631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020220052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphodiester phosphodiesterase"
                     /protein_id="HDK5683136.1"
                     /translation="MKAASHLFASTVLIGTLLAGSSALVDSANANSPQNHAHHQATPL
                     SPSQHNVLNKPYVNIGHRGASGYAPEHTFASYDKSLYEMHADYLELDLQMTKDGHLVA
                     MHDDKVNRTTNGTGRVDHYTLAELKQLDAGSWFNQKYPKYQNPQYFGQQVPTLDEIFS
                     RYGTSVNYYIETKSPDVYPGMEEQLLRQLHQYGLDCKKNLRNGKVVIQSFSRDSLKKV
                     HHENPRIPLVQLLERGELPRQSNADLKKIQSYAVGVGPDYHDLTAQNTRTLRQQGFYI
                     HPYTVNDQKTMARLNQYGVTGVFTNYPDLYHALIQ"
     gene            complement(4081..5325)
                     /locus_tag="PTC08_001632"
     CDS             complement(4081..5325)
                     /locus_tag="PTC08_001632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Glu/Leu/Phe/Val dehydrogenase"
                     /protein_id="HDK5683137.1"
                     /translation="MAEKNNLVTSTQGIIKEAMHKLGFDDGMYELIKEPLRFLTVRIP
                     VKMDDGTVKTFTGYRAQHNDAVGPTKGGVRFHPDVDEEEVKALSMWMTLKCGIVDLPY
                     GGGKGGIVCDPRQMSIHEVERLSRGYVRAISQIVGPTKDIPAPDVFTNSQIMAWMMDE
                     YSQMDEFNSPGFITGKPIVLGGSQGRDRSTALGVVIAIEEAAKRRGKSIEGSRIVIQG
                     FGNAGSFLAKFLYDKGAKIVGISDAYGALHDPEGLDIDYLLDRRDSFGTVTNLFEDTI
                     SNKELFELDCDILVPAAIANQITADNAADIKAEIVVEAANGPTTPEATKILTERGILL
                     VPDVLASAGGVTVSYFEWVQNNTGYYWTEDEVNEKLREKLVNAFDTIYTLSENRKIDM
                     RLAAYIVGIKRTAEAARYRGWA"
     gene            complement(5433..6632)
                     /locus_tag="PTC08_001633"
     CDS             complement(5433..6632)
                     /locus_tag="PTC08_001633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine--oxo-acid transaminase"
                     /protein_id="HDK5683138.1"
                     /translation="MVTKSEEIIEKTNHYGAHNYLPLPIVIAEAEGVWVKDPEGNRYM
                     DMLAAYSAVNQGHRHPKIIQAVKEQADRVTLVSRAFHSDNLGEWYEKICKLSGKEKAL
                     PMNTGAEAVETALKAARRWAYEVKGIKPNEAEIIAMVGNFHGRTMAPVSLSSEKEYQR
                     GYGPLLEGFQNVEFGNIDSLKAAINENTAAVLIEPIQGEAGINIPPEGYLKAVRELCD
                     EHNVLFIADEIQAGLGRTGKLFATDWDGVKPDVYILGKALGGGVLPISVVLADKEVLD
                     VFTPGSHGSTFGGNPLACAASLAALDVIVDEDLPGRSLELGEYFKNALLEIDHPAIKE
                     VRGRGLFIGVELHEDARPYCERLKDEGLLCKETHDTVIRFAPPLVITKEELDFAIEKV
                     KKVFAQG"
     gene            complement(6808..8352)
                     /gene="pruA"
                     /locus_tag="PTC08_001634"
     CDS             complement(6808..8352)
                     /gene="pruA"
                     /locus_tag="PTC08_001634"
                     /EC_number="1.2.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020220054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-glutamate gamma-semialdehyde dehydrogenase"
                     /protein_id="HDK5683139.1"
                     /translation="MIPYRHEPFTDFTKEENREAYFRALEKVEGELGKDYPLIIGGER
                     VFTEDKTRVYNPSNREETIGYVSKATKEHAQQALDAAKEAFKSWRKVDPKVRANILFR
                     AAEITRKRKHEFSALLSKEGGKPWKEADADTAEAIDFMEYYGRQMLELKDGKHVNSRP
                     GEYNQFDYLPVGVSVVISPWNFAYAIMAGTTSAPLVTGNTVLLKPSSNTPIISYKFME
                     VLEEAGLPKGVVNWIPGSSSEIGDFLIENKDVGLISFTGSKKVGKEIIQKASVIQEGQ
                     NHIKRVIAEMGGKDAIIVDNEADLQVATDAIVYSAFGFSGQKCSACSRVIAHQDIYDE
                     LLERVKEATEKIKVGNAAEPDTYVGPVIDQKSLDKIKNYIEIGKGEGRLVTGGNTDEA
                     VGNFVYPTIFADLDPNSRVMQEEIFGPVVGFTKVKDFDEAIDVANDTEYGLTGAVISN
                     NRMKLEQARRDFMVGNLYFNRGCTGAVVGYQPFGGFKMSGTDSKAGGPDYLVLHMQGR
                     SVSEHL"
     gene            8765..9151
                     /locus_tag="PTC08_001635"
     CDS             8765..9151
                     /locus_tag="PTC08_001635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001831918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S1 RNA-binding domain-containing protein"
                     /protein_id="HDK5683140.1"
                     /translation="MKRQYRVGQHVKVRVTGIQPYGAFVETPDSTEGLIHISEIMDDY
                     VHNLKKLLSPGQTVKAKIISIDHNGKLNLSLKDNDYFKNYERKKGKYSVLDEIQETEK
                     YGFRTLEERLPYWVKQSKKKMKYESK"
BASE COUNT         2994 a         2034 c         1792 g         3020 t
ORIGIN      
        1 gtgactagga tgaaagataa agtggtttta gcatattcag gcggtttaga tacaagtgtg
       61 gccgttaaat ggttgattga acaaggatac gacgtcattg catgttgttt ggatgtaggt
      121 gaaggaaaag atttagacct tgtttatcaa aaggcgctta atatgggtgc aattgagtct
      181 cacgtgatta atgcaacaaa agaatttgcg gaagattatg tcggttatac aatcaaaggt
      241 aatctgatgt atgaacaaac gtatccgctc gtttctgcat tgtctcgccc acttatttct
      301 aaaaagttag tggaaattgc acacgaaaca aatgccgttg ctattgcgca tggctgtaca
      361 ggaaaaggca atgaccaagt gcgttttgaa gtggcgatta aagcattaga tccaaacctc
      421 aaagtgattg cacctgtgcg tgaatggggt tggagccgtg aagaagaaat cgattatgca
      481 aaaaaacaca atatccctgt ccctattggc aaagcatctc cgtattccat cgaccaaaac
      541 ttatggggcc gtagtaatga atgtggtgta ttagaagatc catatgttgc tccaccacaa
      601 gatgcttatg atttaacaag tgaattagaa gatacacccg atacagctga tgaaatttta
      661 atcacattcg atcaagggat tccaacacat attaacggtg agtattatgc attagatgat
      721 ctcatcttgt atttaaatga acgcgctgga aaacatggca tcggtagaat cgaccatatt
      781 gaaaatcgcc tcgtcggtat taaatcaaga gaagtgtatg aaacacccgg tgctgaagtg
      841 attattaaag cacaccaggc attagaaacg atcactttaa cgaaagatgt ggcgcatttt
      901 aaacccatta ttgaaaagca atttgcagaa caagtgtata acggcttatg gttctcacct
      961 ttaactgatg ctcttaaaac atttgtagac catacgcaaa aatatgtaac tggtgaagta
     1021 cgtgtcaaac tattcaaagg tcatgccatc gtcaatggta gaaaatcacc gtacacgctt
     1081 tacaatgaaa aattagcgac ttatacgaaa gaggatgcgt tcaaccaaca atctgcagtg
     1141 ggctttatcg atatttatgg cttaccaaca caagtcaacg cgatgttaca tggaggctat
     1201 gcgaatgagt aaaaaagctt ggggcggtag atttgaagag agaccagaag catgggtcga
     1261 tgcttttaat gcgtcgattc actttgacca aaagctcatt gacgaagata ttcaaggtag
     1321 tattgcacac gcaacgatgc tcgcacatca agatatttta actgaagcag aaagtgaatt
     1381 gattatccaa actttaaaag acattcgaca cgactttcac gaaggccaaa ttgaatttca
     1441 aacagcatta gaagatattc atttgaatgt tgaacatgaa ttgattaaac gtatcggtcc
     1501 tgttggcggt aaactgcata ccggacgtag ccgtaatgac caagttgcaa cggatatgca
     1561 tttatatacg aaaaaagaag tgcatacgat tattgattac attcatgctt ttcaacaaac
     1621 gttattgcag cttgcagaac aacatgtaga aacaattatg cctggctata cgcaccttca
     1681 acgtgcacaa ccgatttcat ttgcgcatca tatcatgacg tatttttgga tgctcgaacg
     1741 tgaccagacg cgtttcaaag agtcattggc acgtatcgat gtctcccctt taggtgccgc
     1801 agcattgagt gggacaacgt atccaataga ccgtcatgaa acacaaaaat cactcggttt
     1861 taatgcatta tacgaaaaca gtatcgatgc cgtgagtgat cgtgactaca ttgttgaaac
     1921 gttgaataat attaacttaa cgatgattca cctgtctcgt tttgctgaag aaatcatttt
     1981 ctggtcgtcg gaagaagcga aattcatcac attatctgac ggtttttcaa cagggtcatc
     2041 tattatgcca caaaagaaaa atcctgatat ggctgaactt atccgcggta aagtgggacg
     2101 tacgactgga catctcgtga gtctattgat gacattaaaa ggcttacccc ttgcttataa
     2161 taaggatatg caagaggata aagaaggtct gtttgatgca atcgaaacaa tcaaagggtc
     2221 actgcgcatc tttgacggta tggtcgccac aatgactgtg aacacggatc gtctacaagc
     2281 aacagtgcgt caagactttt caaatgcgac agagttagca gactatctcg taacgaaagg
     2341 tatcccgttt agagaggctc acgaaatcgt cggcaagctc gtactgtggg ctattcaaca
     2401 tgagatgtat ttactcgacg tcccgttaga ggtgtatcaa gatcatcaca cccaaatcga
     2461 agtagatatt tatcaatatt tacaacctga tgaagccgtc aagcgtcgtc aaacttacgg
     2521 tgctacaggt caagatgcag tgcgtcacca aatcgacgtc gcaaagagtc atttcgcgca
     2581 atatcattca aagtaatacc atccaaaaaa gagactcggg caactgaacg tccgggcctc
     2641 tttttgtgtc tactatggta tgtgatatcg tttaatgcac tcatttaaca ccattcacat
     2701 cctgccattt taattgaata tgtcgcaatc atttcaaaca taaagataaa gtaatttctt
     2761 aattaagagt gttgccattt ttttgaattt tgtatatgct gaaattaatc tatcatacta
     2821 aggaggcgtc aaaatgaaag ctgcatcaca ccttttcgca tcaactgttt taattggaac
     2881 actgcttgct ggttcaagcg cacttgttga tagcgcaaat gccaattcac ctcaaaatca
     2941 tgcccatcat caagcgacac ccctctctcc aagccaacat aatgtcttga acaaacctta
     3001 tgtgaatatc ggacatcgtg gcgcaagtgg ttatgcaccg gaacatactt ttgcgtctta
     3061 cgataaaagc ctttatgaaa tgcatgccga ttatttagaa cttgatttac aaatgactaa
     3121 agacggtcat ttagtcgcca tgcatgatga taaagtaaac cgtactacaa atggaaccgg
     3181 ccgtgtcgat cactatacac ttgctgaatt aaaacagtta gatgccggtt catggttcaa
     3241 ccaaaaatat ccaaagtacc aaaacccgca atatttcggt caacaagttc caacacttga
     3301 tgaaatcttc agccgttatg gcacaagtgt caattattac atcgaaacga aatcacccga
     3361 tgtttatcca ggcatggagg aacaactgct ccgccaatta catcaatatg ggctcgactg
     3421 taaaaagaat ttgcgtaacg gtaaagtagt tattcaatca ttttcaagag acagcctcaa
     3481 aaaggttcat cacgaaaacc cgcgtattcc acttgtacaa ttgttagaaa gaggcgaact
     3541 tccacgacag tctaatgctg acttgaaaaa aattcaaagt tacgcggtgg gtgtaggccc
     3601 agattatcat gatctaactg ctcaaaatac ccgcacatta cgtcaacaag gcttttacat
     3661 ccatccatat accgttaacg atcaaaaaac aatggcgcgt ttaaatcaat atggggtcac
     3721 tggcgttttc acgaactatc ccgacctata tcacgcgtta attcaataat aaaggatgtt
     3781 tcattgctaa acatacagaa taggcgacga gacataaaaa cttttgatgc aattgatgcc
     3841 tttaatgacg taaatcacgg cgatcaagat gaacaatgct gcaatcaatc attcgtgctc
     3901 catcgcaaaa gtgatgcccg ctactgaaaa aatagttgca ataataagtg tgaacgtact
     3961 tctatccatt gttgtgcact cctcgatatt ttacctaaat gctagttttc aatgtatttc
     4021 aatgtaatta aaaagcagaa acgcacacat agcgtctctg cttattcatc tctttttctc
     4081 ttatgcccat ccgcggtaac gtgccgcttc tgctgtacgt ttaatgccga caatgtaggc
     4141 tgctaaacgc atgtcaattt tgcgattttc agataaagta taaatcgtgt cgaacgcatt
     4201 cactaatttt tcgcgtaact tttcattgac ttcatcttct gtccaataat aacctgtatt
     4261 attttgtacc cattcaaagt atgaaactgt tacgccacca gcacttgcaa gcacgtctgg
     4321 cactaataaa ataccacgtt cagttaaaat ttttgttgct tcaggcgttg ttggtccgtt
     4381 agctgcttct acaacaattt cagctttaat gtctgctgcg ttgtctgcag taatttggtt
     4441 cgcaatggct gctgggacta aaatatcaca gtctaattca aataactctt tgtttgaaat
     4501 cgtatcttca aataagtttg tcaccgtacc aaaactgtca cgacgatcta ataagtagtc
     4561 gatatccaat ccttctgggt catgaagtgc accgtaagca tctgaaatac ctacaatttt
     4621 cgcaccttta tcgtacaaaa atttcgctaa gaagctacct gcattaccga aaccttgaat
     4681 gacaatacgt gaaccttcaa tggatttacc acgacgtttt gcagcttctt caatggcgat
     4741 aacgacacct aatgctgttg agcggtcacg tccttgtgaa cctcctaata cgataggttt
     4801 acctgtaata aagcctggag agttaaattc gtccatttgg ctatattcat ccatcatcca
     4861 tgccataatt tgagagtttg taaatacgtc tggcgctgga atgtcttttg tcggtccaac
     4921 aatttgtgaa atcgcacgca cataaccacg agataaacgc tcaacctcat gaatactcat
     4981 ttgacgtggg tcacaaacga tccccccttt accaccaccg tatggtaagt cgacaatacc
     5041 gcattttaat gtcatccaca ttgacaatgc ttttacttct tcctcatcaa catctgggtg
     5101 gaaacgtacc ccacctttag ttggtcccac tgcatcgtta tgttgtgcac ggtaacctgt
     5161 aaatgttttt actgtaccat cgtccatttt tactggaata cgtactgtca aaaatcttaa
     5221 aggttctttg ataagttcat acatgccatc atcaaagcct aatttatgca ttgcttcctt
     5281 aatgatgcct tgcgttgacg tcactaaatt atttttttca gccatgatcc atttcgcctc
     5341 tttttcctac tattgttttc gcttacattc gtattgtaac ataagcattt ttattttaaa
     5401 gtgctttccg ctcaaattaa acgtttaact ttttacccct gtgcgaacac ctttttcact
     5461 ttttcaatcg caaaatctaa ctcttctttt gtgatgacta atgggggtgc aaatcgaatg
     5521 actgtatcgt gtgtttcttt acataaaagt ccttcatctt taagtcgttc acaataagga
     5581 cgtgcatctt catgtaattc cacaccgata aagagaccac gaccacgtac ttctttaatc
     5641 gccgggtgat caatttcaag taatgcattt ttgaaatatt caccgagttc aagtgagcgc
     5701 cctggtaagt cttcatcaac aatcacgtcg agtgcagcaa gtgaagcggc acatgctaac
     5761 ggattccctc cgaaagtcga accatgtgaa cctggtgtaa agacatccag tacttcttta
     5821 tccgcaagta caactgagat aggtaataca ccgcctccga gtgctttacc taaaatataa
     5881 acatctggtt tcacaccatc ccagtctgtc gcgaataact taccagtacg acctaaacca
     5941 gcttgaattt cgtctgcaat gaataatacg ttatgttcat cacacagttc acgcactgct
     6001 tttaaatagc cttctggtgg aatgttaatc cctgcttcac cttgaatcgg ctcaatcagc
     6061 acagcagcag tattttcatt aatagcggct tttaaactat caatgttacc aaactcaaca
     6121 ttttgaaaac cttctagcag tggaccataa ccacgttgat attctttttc tgatgaaagt
     6181 gatactggtg ccattgttcg tccgtggaag ttaccgacca tcgcaataat ttcagcttcg
     6241 tttggtttta taccttttac ttcatacgcc caacgacgcg cagcttttaa tgctgtttct
     6301 accgcttctg cacctgtatt catcggtaag gctttctctt tacctgataa tttgcagatt
     6361 ttttcatacc attcgcctaa attgtcacta tggaaagcac gtgaaacaag tgtcacgcga
     6421 tccgcttgtt ctttaacagc ttgaatgatt ttagggtgac gatgcccttg attgactgct
     6481 gaatatgcag ccaacatgtc catgtaacga ttgccttctg ggtctttcac ccatacccct
     6541 tcagcttcgg caatcacgat tggaagcggt aagtagttgt gcgctccata atgattcgtt
     6601 ttttcaatga tttcttcaga ttttgttacc atgcaatctc ctccttaaat acaatacgta
     6661 catctcttca catgaaagtg tagggcaaat cgattattcg catcactcaa cacctgtcat
     6721 tcaagtagtg aacgatactt acaaatgatt taccctacat cagtacaata cattatctcc
     6781 tgtacatttg tgttatttaa ttcatcatta tagatgttct gatactgaac gaccttgcat
     6841 gtgtaatact aagtagtctg gtccgcctgc ttttgagtct gtaccagaca ttttgaagcc
     6901 accaaatggt tggtaaccga caactgcacc tgtacagcca cggttaaagt aaaggttgcc
     6961 gaccataaag tcacgacgcg cttgttctaa cttcatacgg ttgtttgaaa tcacggcacc
     7021 tgttaaaccg tattctgtat catttgcgac atcaattgct tcatcaaagt ctttaacttt
     7081 agtgaaaccg acaactggtc cgaaaatttc ttcttgcatc acgcgtgaat ttggatctaa
     7141 atcagcaaag atagttggat agacaaagtt accgactgct tcatctgtat taccacctgt
     7201 tacaagacgg ccttcacctt taccaatttc gatgtagttt ttaattttgt ctaaagattt
     7261 ttggtcaatg actggtccga catacgtatc tggctctgca gcattaccta ctttaatttt
     7321 ttcagttgct tctttaacgc gctctaacaa ttcatcataa atgtcttgat gcgcgataac
     7381 acgtgaacat gctgaacatt tttggccaga gaaaccgaac gctgagtaga caatagcatc
     7441 tgtcgcaact tgtaaatccg cttcgttgtc gacgataatc gcatccttac cacccatttc
     7501 agcaatgaca cgtttaatat gattttgacc ttcttgaatg acagatgctt tttggataat
     7561 ttctttaccg acttttttag aacctgtaaa tgaaatgagg cccacatctt tgttttcaat
     7621 taagaagtca ccaatttcac ttgaagaacc aggaatccag ttcacaaccc cttttggtaa
     7681 accagcttct tctaaaactt ccataaattt ataagaaata attggtgtat tagaagatgg
     7741 ttttaataat actgtgtttc ctgttacaag tggtgctgac gttgtacccg ccataatcgc
     7801 ataggcaaag ttccatggag aaataacaac actgacacct acaggtaagt agtcaaactg
     7861 attgtattca ccaggacgac tgtttacatg tttaccgtct ttaagttcaa gcatttgacg
     7921 accataatat tccataaagt caatcgcttc tgctgtatct gcatctgcct ctttccaagg
     7981 tttaccacct tcttttgaaa gtaatgcaga gaattcatgc ttacgtttac gtgtaatttc
     8041 agcagctctg aataaaatat ttgcgcgtac ttttggatct acttttctcc aagatttaaa
     8101 cgcttctttc gctgcatcta acgcttgttg tgcatgttct ttcgttgctt ttgaaacata
     8161 cccgattgtt tcttcgcgat ttgaaggatt gtaaacacgt gttttatctt cagtgaatac
     8221 gcgctctcca ccaataatga gtggataatc tttcccgagt tcaccttcaa ctttttctaa
     8281 tgcacgaaaa taagcctcgc gattttcctc tttcgtaaaa tctgtaaatg gttcgtgtcg
     8341 atatggaatc atttaaaaat cctcctttgt ttataataag aaaaccctta catctatcat
     8401 gacatattta tgacatattt gtaaaagaaa acactatttg tatcaaccta aaaaccgttc
     8461 gtgtcacatg ccatgaggta ctcacatgct cgaatcattt tgagtcaatc gatattgatt
     8521 aagcgctttc atttataagc cattatagcc tttttaacct tgtttttgca atagtctttc
     8581 tctagcaaat taatcacttt tcacgatact tttataacat aaatccgtaa caatccagtg
     8641 cccttcatat acaattcttc gtgagcgtta aaaaatcaat ttcgaattac gaatggttag
     8701 gagtttcttc aaagatgtgc tatgataaaa atgttaaaaa ctaatcgata aggggttatg
     8761 aatgttgaaa agacagtatc gtgttgggca acatgtcaaa gtacgcgtga ctggtattca
     8821 accctacggc gctttcgtcg agacccctga cagtactgaa ggactcattc atatatccga
     8881 aatcatggat gattatgtac ataatttaaa gaagcttttg tcaccaggtc aaactgtaaa
     8941 agctaaaatc atctcgattg atcacaacgg aaaattaaat ttatctctga aggataatga
     9001 ttattttaaa aattatgagc gtaagaaagg taaatattca gtattggatg aaattcagga
     9061 aactgagaaa tatgggtttc gaacattaga ggaacgtttg ccatattggg tgaaacagtc
     9121 caaaaagaag atgaaatatg agtctaaata acgcttgagg tcaatgtaca gtttgtgcat
     9181 tggctttttt atttggcttt ttttgggagt tgtgcggttt gagttctttg gggttacata
     9241 tacagcgcgg tgacagtagc aagatagcta gagctgagtc cttattatta atagtaaaaa
     9301 ttgacatgga tggatatttt cctcgattca ttaatagacc actcagtcgg ttgttacttt
     9361 ttagttgtcc atctcgtttt atctcaacac gagagcaatt ctctgctatc tcaaaaaaac
     9421 agtggaaaac attgtgatga cgaatgagta gcacattttg ttttaatttc atcactctat
     9481 tatgtgattt atacccccat tttaccgaaa gatcaactat aaaaaaaggt actcaaaatt
     9541 catgttttgt gaactttaag tccctttact gatttttata aagttactgt actttaatat
     9601 tttttctatt tttcgaatga atcaccaaac caacgacaat gaaatcaatg agggctaaaa
     9661 ctaagtacaa tacaaccata ctcgatatcg tcggatgata taggatagca atgatgaaat
     9721 acaatagact catagctatg aacgattttc ccgttatttg attcacatca tttctatttt
     9781 taaaaatgag taacagtgga ttattccaaa acgtgctgtt aaatttcata aagagaacac
//
LOCUS       DANHOL010000092         9739 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.093, whole genome shotgun sequence.
ACCESSION   DANHOL010000092 DANHOL010000000
VERSION     DANHOL010000092.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 9739)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9739)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9739
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.093"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            329..1138
                     /gene="cntK"
                     /locus_tag="PTC08_001636"
     CDS             329..1138
                     /gene="cntK"
                     /locus_tag="PTC08_001636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine racemase CntK"
                     /protein_id="HDK5683141.1"
                     /translation="MEIVHFSKFNPSGNMTVLVDSQHDPSQYRHIAQQLMKSSHVGCE
                     QVGFIVDDEGELPHQLVMSGQEFCGNGTLSFIRYLKDRNLLTTSSFKLKVSGMDTPVH
                     CAIHETPQQFETTLPQPEKILERQYKIDDVLFEGLEIQYDTYQHFVFPITVWSEKLAS
                     SIESFVRAEEWPEHLTAVGLMLYDTLHQRLYPLIYVPQIDSIIWEQSCGSGTGSVGVY
                     EAYQNQLEHLEKEIVQPGGALTAIVDHNDEGYQVAIKGNVSTVATGLAYIE"
     gene            1148..1966
                     /gene="cntL"
                     /locus_tag="PTC08_001637"
     CDS             1148..1966
                     /gene="cntL"
                     /locus_tag="PTC08_001637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="staphylopine biosynthesis enzyme CntL"
                     /protein_id="HDK5683142.1"
                     /translation="MNKIQQNTHEIEAQLKHYQQQFEHLYHNIQQGERALNDLERLID
                     EYSSYILDEQPKQQYEHWRSQTTEQQHLIKPLADITAKCVKLMESSRARRLIHGEHGT
                     TGYFDNIEHCISEEFGQFEITSEDTVLLVGSGAYPMTLVQIAKETGARVIGIDIDEEA
                     VRYGQQVIRILAPDAPIEIHQATVSELEGIQNVTHVIFSSTVEMKYDILEELYHLTGH
                     DIVVSMRYGDGLKSIFNYPKQETHPQQWTFVDDITRPDQIFDIALYQKKSEGRA"
     gene            1969..3264
                     /gene="cntM"
                     /locus_tag="PTC08_001638"
     CDS             1969..3264
                     /gene="cntM"
                     /locus_tag="PTC08_001638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="staphylopine biosynthesis dehydrogenase"
                     /protein_id="HDK5683143.1"
                     /translation="MKKSVLIAGTGPVAVQLAVLFKTYTTHHVDMVGRSDVSAKAQQF
                     WQAYQNAQQLEVQVQNDLHMSLAGTATLRRLYERYEAVEPHYDVLVLACTADAYSQVI
                     QQLSPAVRQQLKHVVLVSPTFGSHMVVQQQFSAEQPNIEVISFSTYLGDTTVSHPETP
                     HRVLTKGIKKHLYIGTIYEQSDFSQEIIDLLSEVQIPVTQVAHPLMAESRNSSLYVHP
                     ALFMNKHALKAVFEGMTVPFYVYKLFPEGPITMQLIAEMRQMWQEVMAILKHLNIDTL
                     NLLKFMVKENYPLRPETMDDDRIEAFETLSAIEQEYLLYIRYTGILIDPFSEPDENGK
                     YFDFSAVPFKEVFRNEEGVWQIPRMPNEDYYRTQMMRGIAQALNISTPMMDTLIQRYE
                     AQLTAFQKAHPNDRVSTQFQIQSFEEDINSIAKLLNSEG"
     gene            3502..5100
                     /gene="nikA"
                     /locus_tag="PTC08_001639"
     CDS             3502..5100
                     /gene="nikA"
                     /locus_tag="PTC08_001639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel ABC transporter, nickel/metallophore
                     periplasmic binding protein"
                     /protein_id="HDK5683144.1"
                     /translation="MMKNLKWIAVSIVMLLVLAACGNSKALEQKKEDKNLTYATSKDI
                     GDMNPHVYGGSMSAQGMVYESLVDHTQKGIEPLLAESWDVSEDGKTYTFHLRKGVKFQ
                     DGTPFNADAVKKNFDAIQANQKLHSWIKLSTLIDRTEAKDDHTFVMTLKEPYNATLEE
                     LAMTRPYVFVSPKSFKAEGTKDGLKSYVGTGPYQLKSHDKDEQATFERNEDYWGGKPH
                     LKTIVAKVLPAGETSFLALQKGEVNFAFTDDRGTDNIDNEAMKKLTDNSDFQLKRSQP
                     MNTKMIVANSGKKDSPAQDKAVREALWYSVDQKRIADKILEGTEKPASQLFSKNVPHA
                     NIDLPKRDFDLKKAAALLDEAGWKQNDKGEVREKDGQKLEMTLYYDNHSSSQKQEAEF
                     IQAKAKEIGMALKIVGETSDKVAERRTSGDYDLLFNQTWGLQYDPQSTISGFKADTGY
                     KAAVSGIKEKDQLFDDIDTALKTQDAKEQDQKYKDILTTVHDEAIFIPISHGGMTVVA
                     PKDLEHISFKQSQYELPFEQMDYK"
     gene            5113..6045
                     /locus_tag="PTC08_001640"
     CDS             5113..6045
                     /locus_tag="PTC08_001640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDK5683145.1"
                     /translation="MAYSAMKRLLLMIPLLIVISFLTFALTHLSSEDPAVVILHAQEV
                     PDITQSLIEQTRAKYHLDAPFLVQYWEWLQSAVQLQFGHSFVTGEDVGLRLWPAFFNT
                     LKLTLISSVAIIVLSLLFGILTALLRGTWFDRMTRTTAFVLTAIPSYWLAAILIIFLS
                     VKLNALPTSGLTGPESYILPVAVITLGYTGIYFRNVRSAVIQQLDQDYVLYMRAMGVP
                     MSQLLVYVARNAMQVVVSIFCMSIPIILGGSVVIENVFAWPGMGQLSVKAVLEQDFPM
                     IQAYVLIVSVLFILFNTLADVINMWLNPKLREEH"
     gene            6047..6910
                     /locus_tag="PTC08_001641"
     CDS             6047..6910
                     /locus_tag="PTC08_001641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HDK5683146.1"
                     /translation="MIVFQRLLNDNGAKWALAIIAVYILLGVFAPIVTPYDPNTVNID
                     DKFAGMSFAHWLGTDHLGRDILTRLIFAIRPSFLLILFALACSVLIGTLLGFISGYFG
                     RWVDALVMRICDVMLSFPTYVMTLALIGVLGIGLKSIIVALIITRWAWFCRIIRTSVM
                     QYRNSDDVKFARTIGLSHARIIMTHILPRTLADIAIISTSSMVSMILQISGFSFLGLG
                     VKAPTAEWGMMMNEARKVMFSHPELMFAPGIAIIVIVLAVNFLSDALQIAIDPKLSQQ
                     QMKQRIKKGWI"
     gene            6910..7728
                     /locus_tag="PTC08_001642"
     CDS             6910..7728
                     /locus_tag="PTC08_001642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDK5683147.1"
                     /translation="MVEQLMRVEDLTLIDGHTNHVLVHHFNLTLHRGEVIAIIGESGS
                     GKSMTCKALLGLNDRNIRMSGEIWFQEEALHNAPEADFRKIRGRRIAMIMQQGATAFN
                     PSFTVGAQLTMMLKQHRPMSTQQQKATLQHYFDMLGLRDFERILKSYPHQLSGGMLQR
                     LMIILALALQPDIIIADEPTTALDAITQYEVIEELREVKEKIGCAMIFVSHDLAVVKS
                     IADQVIVMRNGDVVEAGPAHQLFTAPQHAYTQFLIAARDRVTRYYKSLRGDASC"
     gene            7722..8462
                     /locus_tag="PTC08_001643"
     CDS             7722..8462
                     /locus_tag="PTC08_001643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDK5683148.1"
                     /translation="MLEVQNVTKSYRSGVKRQKRQIVKQVSFQCSKGQSIAIIGESGS
                     GKSTLARMILGIEKPDTGTVMLDGQPVCQRHTRLGKMSVVFQDYKSSLHPYFNVRQIL
                     NEALSQCDTPVDDKEAHMTALLERVGLSAAFLNKYPQMMSGGEAQRVAIARAVITNPD
                     YIVLDEAISALDMSIQSQILDLLTTLRDKYQLSLIFITHDIQAAVYLCEDLIIFNDGQ
                     IQERLNRHQLKTLQNDYTRELFEKQFMN"
     gene            8474..9664
                     /locus_tag="PTC08_001644"
     CDS             8474..9664
                     /locus_tag="PTC08_001644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDK5683149.1"
                     /translation="MKGALAWPFLRLYILALFFFSANAILNVMIPLRGHDLGATNATI
                     GIVMGAYMLTAMLFRPWAGQVIAKVGPIKILRWILIINGFALILYGFTGLEGYFIARV
                     MQGVCTAFFSMSLQIGIIDALPEEDRSQGISLYSLFSYIPGIIGPMIAVGIWQLDNLS
                     YFALTMIIIAITTGVVGFSATLHGHDDADTTPAQQEKMPYGAMTVFLQLFKNPFLLKA
                     GTIMLVASIGFGAVATFIVLYVNKYQVGHASLFLAVQAITVVFARFFLRQYIPSDGRW
                     HVRFMLGVLGLLTVALLFIAIGPYVGGWILYISAVMIGLTQAMVYPTLTSFLSFKLPK
                     VGRNMLLGLFIATADLGVSLGAALMGPIADMVGYANMYLICGILMAFITLMSIERRPQ
                     FIEK"
BASE COUNT         3026 a         1707 c         2131 g         2875 t
ORIGIN      
        1 atcacaaaag atgatttcac agctcgtttt aatgtgtttt tacatgttca aacacagctt
       61 ctgttaatgt ttcgcaacga ttttaaaaat gtatcttaaa ttatgatgat tcagcggtct
      121 ttgtacgatg acatcattac aatggctgac tattaatagg aatttttaga agtagatatt
      181 tagagatgaa gatggataat aaaaagtaaa gttttgataa tgattatcat tgttgacatt
      241 tcaaaaattt gagagtagga tatttttaaa tcgttatgat tacgatttgt aattaatgat
      301 atttatttta aaaggagatg gaataaaatt ggaaattgtt catttttcaa aattcaatcc
      361 atctggaaat atgactgttt tagtggattc acaacatgac cctagccaat ataggcacat
      421 cgcccagcaa cttatgaaaa gttcacatgt gggttgtgaa caagtcggat ttattgtaga
      481 tgatgaaggt gagctaccac atcaacttgt gatgagtggc caagaatttt gcgggaatgg
      541 gactttgtca tttattcgtt atttgaagga tagaaattta ctaacgacgt cctcttttaa
      601 attgaaggta tccggaatgg acacgcctgt tcattgtgcg atacatgaaa cacctcaaca
      661 atttgaaacg acgctcccac aaccagaaaa aatattagaa agacaatata agattgatga
      721 tgtcttgttt gaagggttgg aaattcaata tgatacatat caacactttg tattcccaat
      781 tacagtgtgg tcagaaaagc tagcctcctc tatcgaatcg tttgttagag ccgaagaatg
      841 gccagaacat ctgacggctg ttgggttgat gttatatgat acactgcatc agcgcttgta
      901 tcccctcatc tatgtgccac agatagatag catcatatgg gagcaaagtt gtgggtcagg
      961 aacgggttcg gtaggtgtct atgaagcgta tcaaaaccag ttagaacatt tagaaaaaga
     1021 aattgtacaa cctggaggtg cgttgactgc cattgttgat cacaatgatg agggctatca
     1081 agttgcaatc aaaggaaatg tttcaacggt tgccacaggt ttagcataca tagaatagga
     1141 gtacgtgatg aataaaatac aacagaacac acatgaaatt gaagcgcaat taaaacatta
     1201 ccaacagcaa ttcgaacacc tttatcataa cattcaacaa ggcgaacgtg cacttaatga
     1261 tttggaacgc ttaattgatg aatatagcag ttatatattg gatgaacagc ccaagcaaca
     1321 gtatgagcat tggcggagtc agactacaga acagcagcat cttattaaac cactagcaga
     1381 tattactgca aaatgcgtta aattgatgga gtcctctcga gcacgccgtt tgattcatgg
     1441 tgagcatggg acgacaggat attttgacaa tattgaacat tgcatttcgg aagaatttgg
     1501 acagtttgaa attacatctg aagatacagt gctattagta ggatcaggtg cgtaccctat
     1561 gactttagtt caaattgcaa aagaaacagg cgcacgtgtc attggaattg atattgatga
     1621 agaagcggtg cgctatggac aacaagtcat tcgcatttta gccccagatg cgccaataga
     1681 aatacatcaa gcaacagtat ccgaactaga aggaattcaa aatgtcacac atgtcatctt
     1741 cagctcaacg gtcgaaatga aatacgacat tttagaagaa ctttatcacc ttaccggtca
     1801 tgacattgtg gtgtctatgc gttatggtga tggcttgaaa tctatattta attatcctaa
     1861 acaagagaca catccgcagc agtggacttt tgtagatgac attacacgtc cggatcaaat
     1921 ctttgatatt gcactctacc aaaaaaaatc agaagggcgt gcataataat gaaaaaatct
     1981 gtcttaattg cagggacagg tccggtcgcc gtgcagcttg cagtgttatt caagacctat
     2041 acaacacatc atgtagatat ggtggggcga agtgacgttt cagcaaaggc acaacagttt
     2101 tggcaagcat accaaaatgc acagcaactt gaagtacaag ttcaaaatga cttgcatatg
     2161 tcgttagcag gtactgcaac acttagacga ttgtatgagc gttatgaagc agtcgagcca
     2221 cattatgatg tgctcgtgct tgcatgtact gccgatgcat acagtcaggt tatacaacag
     2281 ttgtctccag ctgtacgtca acaactcaaa catgtcgtgc ttgtttctcc tacgtttggt
     2341 tctcatatgg tcgtccaaca gcagtttagt gcagaacagc cgaatattga agtgatttca
     2401 ttttctacat atttaggtga tacgactgta tcgcatcctg aaacaccaca tcgtgtactg
     2461 acaaaaggaa taaaaaaaca tttgtatatc ggtacaatat atgaacaatc tgacttttcc
     2521 caggaaataa tagatttgtt atctgaagtt caaattccag tgacgcaagt tgcccatcca
     2581 ctcatggcag agtcgcgaaa cagctcactt tatgtgcatc cagcgttatt tatgaataaa
     2641 catgctttga aagcagtgtt tgaaggaatg accgtaccat tttatgtata caaattattt
     2701 ccagaaggtc ctattacgat gcagttaatc gctgaaatgc gacaaatgtg gcaagaagtt
     2761 atggcgatat tgaaacattt aaatatcgat acgttaaatc tattgaaatt tatggtgaaa
     2821 gaaaattacc cccttcgccc tgaaacgatg gatgatgatc ggattgaagc gtttgaaaca
     2881 ctttcagcca tcgagcaaga atatttatta tacatacgtt ataccggtat tttaattgat
     2941 ccgttttcag agccagatga aaatggtaag tattttgatt tttcagcagt tccttttaaa
     3001 gaagtttttc gaaatgagga aggtgtttgg caaattcctc gcatgccgaa cgaagactat
     3061 taccgtacac aaatgatgcg aggtatagca caagcattga acatctccac gccaatgatg
     3121 gatacattga ttcaacgcta tgaagcacaa ctgacggcat ttcaaaaagc acatcctaat
     3181 gatcgtgtat ccacgcaatt tcaaatacag tcgttcgagg aagatatcaa cagtatcgct
     3241 aaattattga actctgaagg ataaagggaa tgtgttaagt tcattgattg gatgaaactc
     3301 cattttgaga accagtaaaa tgactgtgaa acaaaattca actatgaagt gactggattg
     3361 ataaaagtgt tcaaggtggg tcatcatgag tacccattga cactgatatt tatacgctaa
     3421 agaaaatcaa gcaaatttaa caatgtgtac taaaaatgct agcactactg aaagaaatga
     3481 gataaagaga ggatatgaat gatgatgaaa aatttaaagt ggattgccgt aagtatagta
     3541 atgttacttg tacttgcagc ctgtggtaac tctaaagcat tagagcagaa aaaagaagat
     3601 aaaaatctta catatgccac atcgaaagat attggggata tgaacccgca tgtatacggt
     3661 gggtcaatgt cagcacaagg tatggtctat gaatcattag ttgatcatac acaaaaaggg
     3721 attgaaccgt tattagctga atcttgggac gtatcggaag atggaaaaac ctacacattt
     3781 cacttaagaa aaggtgtaaa attccaagat gggacaccgt ttaatgcaga cgccgtgaaa
     3841 aagaactttg atgctattca agcaaatcaa aaattacatt cttggattaa attatcaaca
     3901 ttaatcgacc gtacagaagc aaaagatgat catacctttg tgatgacttt gaaggagcca
     3961 tacaacgcaa cgttggaaga actagccatg acacgacctt acgtttttgt ctcaccaaaa
     4021 tcatttaaag cagagggtac aaaagatggt ttgaaatctt atgttggtac aggtccatat
     4081 caattaaagt cacatgataa agatgagcaa gcgacatttg aacgtaatga agattattgg
     4141 ggtggcaaac cacatttgaa aacgatagtc gctaaagtat taccagcagg tgaaacatca
     4201 tttttagcgt tacaaaaagg tgaagtgaac tttgcgttta cggatgaccg tggtacagat
     4261 aacatcgaca atgaagcaat gaaaaaatta acagacaata gcgatttcca attgaagcgc
     4321 agtcaaccga tgaatacgaa aatgattgtt gcaaactctg gtaaaaaaga cagccctgca
     4381 caagataaag cggtgcgtga agcattgtgg tatagcgtcg atcaaaagcg tattgcggac
     4441 aaaattttag agggtactga aaagcctgcg tcacaattat tctcgaaaaa cgtgccgcat
     4501 gcgaacattg atttaccaaa acgtgatttt gatttgaaaa aagcagcggc gctattagac
     4561 gaagcgggat ggaagcaaaa tgacaaaggt gaagtgcgtg aaaaagacgg acaaaagctt
     4621 gagatgacgt tatattacga caaccattca agctcgcaaa aacaagaagc tgaatttatt
     4681 caagcgaaag cgaaagaaat tggtatggca ttgaaaattg taggagaaac atctgataaa
     4741 gtggcagagc gccgtacatc aggtgattat gacttactgt ttaaccaaac atggggtctt
     4801 cagtatgatc cacaaagcac gatttctggc tttaaagcag atacaggtta taaagcagcc
     4861 gtttcaggta tcaaagaaaa agaccaactg tttgatgaca ttgatacagc tttaaaaaca
     4921 caagatgcaa aagagcaaga ccaaaagtat aaagacattt taacaacagt acatgatgaa
     4981 gcaatcttta ttccgatttc tcacggaggt atgacagttg tcgctccgaa agatttagaa
     5041 catatttcat ttaaacaatc acaatacgaa ttgccatttg aacaaatgga ttacaaataa
     5101 ggtggtccat caatggcata tagtgcgatg aaacgtttgt tactgatgat accgttgttg
     5161 attgtcatta gctttttgac ttttgcatta acgcatttat ctagtgaaga tccagccgtc
     5221 gtcattctac atgcacaaga agtaccagat attacgcaaa gtttaattga acaaacacgt
     5281 gccaagtacc atttagatgc gccgttcctc gtacaatact gggaatggct gcaatccgcg
     5341 gtacagctac aatttggaca tagtttcgta accggcgaag atgtcggttt gagactgtgg
     5401 cctgcatttt ttaatacatt gaagttaaca ttgatttcaa gtgtggcgat tattgtgttg
     5461 tcgctgttgt ttggtatttt gacagcattg ttgcgtggga catggtttga tcgtatgaca
     5521 cggacgacag ctttcgtatt aaccgcgatt ccatcttatt ggctagcggc gatattgatt
     5581 atttttctat cagttaaatt gaatgcatta ccgacgtcgg gattaacagg tcctgaaagc
     5641 tatattttac ctgttgcggt aatcacgctt ggttataccg gcatttattt tagaaatgtc
     5701 agaagtgcgg tcattcagca acttgatcaa gattatgtgc tctatatgcg agcgatgggt
     5761 gtgccgatgt cgcaactgct cgtttatgtg gcacgtaatg caatgcaagt cgtcgtttct
     5821 attttttgta tgtcgattcc tattatttta ggtggttctg tcgtcatcga aaatgtattt
     5881 gcgtggccgg gtatgggcca actgagtgtc aaagccgtgt tggaacaaga ttttccaatg
     5941 attcaagcat atgttcttat cgtttcggta ctatttatct tatttaatac attggcagac
     6001 gtcattaata tgtggctgaa cccgaaatta agggaggagc attaagatga ttgttttcca
     6061 aagattatta aatgataatg gcgcaaaatg ggcgttggca atcattgctg tttatatttt
     6121 actcggggta ttcgcgccga ttgtaacgcc ttatgacccc aatacagtga atatcgatga
     6181 caaatttgcc ggcatgtcat ttgcacattg gcttggtacg gaccatttag gtcgagatat
     6241 tttaacacgc ttgatttttg cgatacgtcc gagctttttg cttatcttgt ttgcgttagc
     6301 gtgttcggtg ttgataggga cgctactcgg cttcatctca ggctactttg ggcgctgggt
     6361 ggatgcactc gtgatgcgta tttgcgatgt gatgttatcg tttcctacat atgttatgac
     6421 gctcgctttg atcggtgtac tcggcattgg gttaaaaagt attatcgttg cactgatcat
     6481 tacgcgctgg gcatggtttt gccgaattat ccgcacaagt gtgatgcaat atcgcaattc
     6541 agatgatgtg aaatttgcac gtacgattgg tctgtcacac gctcggatta ttatgacaca
     6601 cattttgccg cgaactttag cagatattgc gatcatttca acgagttcga tggtgtcgat
     6661 gatcttacaa atttcaggat tttcattttt aggactcggc gttaaagcac cgacagcaga
     6721 atgggggatg atgatgaatg aagcacgtaa agtgatgttc agtcaccctg agttgatgtt
     6781 tgcgccaggt attgcgatta tcgtcattgt gttagcggtg aactttttat ccgatgcgct
     6841 ccaaattgcg attgatccaa aattgtcaca acaacaaatg aagcaacgca ttaagaaagg
     6901 gtggatataa tggtagaaca attgatgcgt gtagaagatt taacactcat tgatggtcat
     6961 acgaaccatg tcctcgtcca ccactttaat ttgacgttac atcgtggtga ggtcattgcg
     7021 attatcggtg aaagtggcag tggtaaatcg atgacgtgta aagcattact gggattgaac
     7081 gaccgtaata ttcgaatgag cggtgaaatt tggttccaag aagaggcact tcataatgcg
     7141 cctgaagcgg actttcgaaa aatcagaggc cgacgtattg caatgattat gcaacaaggt
     7201 gcgacagcgt ttaacccttc ttttacagtt ggtgcacagt tgacgatgat gttgaaacag
     7261 caccgtccta tgtcgacaca acaacagaag gcgacgttac aacattactt cgacatgctt
     7321 ggtttacgag attttgagcg tattttaaaa tcatatccgc atcaattgtc aggaggcatg
     7381 ttgcaacggt taatgattat attagcactc gcactccaac cggacatcat tattgcggat
     7441 gagccgacta cagcactcga tgccattaca cagtatgaag tcattgaaga attacgtgag
     7501 gtcaaagaaa aaatcggttg tgccatgatt tttgtctctc atgacttagc agttgtaaag
     7561 tcgattgcag atcaggttat tgtgatgcgt aatggtgatg tcgttgaagc aggaccagca
     7621 catcaattat tcacagcacc gcaacatgcg tatactcaat ttttgattgc agcacgagat
     7681 cgtgtgacac gttattacaa atcattgcga ggtgatgcgt catgttagaa gttcaaaacg
     7741 tcacgaaatc ttatcgtagt ggtgtgaaga ggcaaaaacg acaaatcgtg aaacaagtca
     7801 gttttcaatg cagtaaagga caaagtatag cgattattgg agaaagtggt agtggtaaat
     7861 ccacattggc gcgtatgata ttaggtattg aaaagccaga tacaggaact gtgatgttgg
     7921 atggacaacc ggtctgtcaa cgtcataccc gtcttgggaa aatgagcgtc gtgtttcaag
     7981 attacaagtc ttcactgcat ccctatttca atgttcgtca aattttaaac gaggcactta
     8041 gtcaatgcga tacaccggtt gacgataaag aagcgcatat gactgctttg ctcgaacgtg
     8101 tcgggttaag tgcagccttt ttaaataaat atcctcagat gatgtcagga ggagaagcgc
     8161 aacgtgtcgc tattgcaaga gcggtcatta cgaatccaga ctacattgtg ttagatgaag
     8221 cgattagtgc gctcgacatg tcgattcagt cgcaaattct agatttatta acgacactga
     8281 gagataaata tcagctcagt ttgattttca ttacacatga tattcaagcg gcggtctatt
     8341 tatgtgaaga tttgatcatt tttaatgacg gtcaaattca agagcgactc aatagacatc
     8401 agttgaaaac gcttcaaaat gattatacgc gtgaactttt tgaaaaacaa tttatgaatt
     8461 aggaggcttt gatatgaaag gtgcactcgc ttggcctttt ttgagattgt atattctcgc
     8521 gctatttttc tttagtgcga atgctatttt aaatgtcatg atcccgttac gcggacatga
     8581 tttaggtgca accaatgcga ccattggtat tgtcatgggg gcatacatgt tgactgccat
     8641 gctttttcgt ccatgggcag ggcaagttat cgccaaagtc ggtcccatta aaatattaag
     8701 atggatatta attattaatg gttttgcact gatcttatat ggatttacag gtttagaagg
     8761 ttactttatt gcacgtgtga tgcaaggtgt atgtacagcc tttttctcta tgtcattaca
     8821 aatcgggatt atcgatgcgt tacctgaaga ggatcgttca caaggtattt ccttatactc
     8881 actcttttct tacataccag gcattatcgg accaatgatt gcagtgggga tttggcaatt
     8941 ggataacttg agttatttcg cattgacgat gatcattatc gcgattacga caggtgtggt
     9001 cggtttcagt gcgacgcttc atggacatga tgatgcagac acgacgcctg cgcaacaaga
     9061 aaagatgcca tatggtgcga tgacagtgtt cttgcagtta tttaaaaatc cgtttttatt
     9121 aaaagctggg acgattatgc ttgttgcctc aattggattt ggtgcagtgg caacgtttat
     9181 cgtgttgtat gtcaataaat atcaagtcgg tcacgcgagt ttatttttag ctgtacaagc
     9241 cattacggtt gtatttgcac gtttcttttt acgtcaatac attccttcag atggacgctg
     9301 gcacgttcgt tttatgttag gtgtcctcgg attattaact gtcgcgctgt tattcattgc
     9361 aatcggtcct tatgtcggcg gatggatact ttatatcagt gctgttatga ttggtttgac
     9421 gcaagcgatg gtgtatccga cattaacttc atttttaagc tttaaattac cgaaagttgg
     9481 acgaaatatg ttactcggtc tctttatcgc aacagctgac ttaggtgttt cactcggggc
     9541 tgcattaatg gggcctatag cagatatggt tggctatgca aatatgtatc tcatttgtgg
     9601 tattttaatg gcattcatta cactgatgag tattgagaga agaccgcagt ttatagaaaa
     9661 ataacgtaga aaatgaacag gctagggtgc atttcaaagt ttcctagcct gttttcaatt
     9721 gaaaaaataa attttaaag
//
LOCUS       DANHOL010000093         9667 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.094, whole genome shotgun sequence.
ACCESSION   DANHOL010000093 DANHOL010000000
VERSION     DANHOL010000093.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 9667)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9667)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9667
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.094"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            <1..957
                     /gene="dcm"
                     /locus_tag="PTC08_001645"
     CDS             <1..957
                     /gene="dcm"
                     /locus_tag="PTC08_001645"
                     /EC_number="2.1.1.37"
                     /inference="COORDINATES: protein motif:HMM:NF012372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA (cytosine-5-)-methyltransferase"
                     /protein_id="HDK5683150.1"
                     /translation="FNLVFANDIFSQAADVYEINFNHKVERRSITDIKESELPNVPVD
                     VVLGGFPCQSFSYSGNRGGLSDPRGQLYLQMIRVINHYKPKLFVAENVDGIRNSRKNH
                     KGENVDTTALDTILQDFDDANYDVQYKVLNAADYGVPQSRRRVIIIGIRKDLGSSENV
                     YYPEAQYNQNGVLKPYWRTSKEGIDDLWDKINDLTVFNHTYRDYSKAKFYPGKKTQGN
                     VRISPDKPAPTIRAEHHGNIEAHYRTLKDDELDMTGWRRLSVRECARLQSFPDNYNFV
                     ASTSSSYKMIGNAVPPVMAWHIAKSVLYTLEKLKLLKSIPQT"
     gene            complement(1040..2461)
                     /locus_tag="PTC08_001646"
     CDS             complement(1040..2461)
                     /locus_tag="PTC08_001646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase"
                     /protein_id="HDK5683151.1"
                     /translation="MKFKRQFAQLSIASALIASTLGAGHVASASSAGEGPEQQATMYG
                     DTSHPKNVIFLVGDGMGPAYNTAYRYFADNPDTKEVENTAFDDYLVGTQQTYSDDDKE
                     NITDSAAAGTAFSSGHKTYNGAIGVDKKQNDLETVLERAKKLGKSTGLVSTAEITDAT
                     PAAYTANVDDRDKKDEIAHQFYDQRINNQHKVDVILGGGAKYFGKENGNITDQFKNDG
                     YGVVTNRQQLENASEEQLLGLFADKNMPLAIDAEEDQPELLDMQNAALERLSKNDKGF
                     FLMVEGASIDKQGHANDITGVMSEMEGFEKAFANAIDYAKSHPDTLVIATADHSTGGL
                     SMGQGSAYEWNPEPIQQMKHSGKWMTEQIADGKGVEETIQAGYGFDLSEKELNAIQQE
                     ADALKKLDEESDDYEAQQQKLEDAIQAPINKKSNTGWTTNGHTGEDVNTYAFGPGADQ
                     FQGNIDNTDNAKNIFNFFGNTPQ"
     gene            2909..3544
                     /locus_tag="PTC08_001647"
     CDS             2909..3544
                     /locus_tag="PTC08_001647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683152.1"
                     /translation="MKSDLTSRKHKHAHPSHQQRQPKYEPSPSSNPKWLIALIILLII
                     IVLGGMIYGGYRLSQVKLHLNTTDNQATTTQSEQNTATVHLDVLSYDFSQDFMHSDHI
                     DGYQDFHIGETRKDVEATHGPPEKTVEIDGRDAASYGDLAVSYNAQHQVEHIYVTPHQ
                     VTTAQFIDVHQAPNMTDGNIWYYDSRQDNPYTIKVYTQNDQVIAIENIPQI"
     gene            complement(3698..4285)
                     /gene="lepB"
                     /locus_tag="PTC08_001648"
     CDS             complement(3698..4285)
                     /gene="lepB"
                     /locus_tag="PTC08_001648"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HDK5683153.1"
                     /translation="MRKETKDIIIVIVIALVIVGFVKWLIFTPYTVNGASMHPTFETG
                     DRVIVNQLSKKLNTLTHGDVIVFHEDAERDFIKRIIGLPGDHVAYENDQLYINGQKVE
                     EPYLKVNKKEKAAEFLTENFDVSDIEGSEGRTMIPQGHYLVLGDNRMNSIDSRSYTVG
                     LVPHKRIVGKAFVRYWPLERAKLQFNPGTFEKVEA"
     gene            complement(4394..4942)
                     /locus_tag="PTC08_001649"
     CDS             complement(4394..4942)
                     /locus_tag="PTC08_001649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDK5683154.1"
                     /translation="MENINTVVAENLQYYRQAHRLSLDKIAQLTGISKTMISQIEKGV
                     ANPSINTLWKIANGLRIPLTSLISEENEAIQKIDRSDIQPIYNDNRSVVVFPYFPYEA
                     AHAFEMFCMRMDADSILESDAHQEGAKEYIIVNEGTLTLTVGDTHYEIEAGQAISFNA
                     NTAHTYRNQTSEELRITATIQY"
     gene            5051..6229
                     /locus_tag="PTC08_001650"
     CDS             5051..6229
                     /locus_tag="PTC08_001650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDK5683155.1"
                     /translation="MEQQSNRINWLLFIGIMLIAANLRAPITSVGVVLPAIKDTLNLS
                     NTAVSFISIIPLLAFAIISSLVAKVSHRFGMERSLFVALLLILFGVILRSITEVSLLY
                     IGTILIGVGIAFGNVLAPGMIKSKFPYRIGIMTGYYTVVMNIFGALSSYGAAPLLKHY
                     NYNVALGSIGIVAFIAVLLWTFQLRHHAAQKQVDLSEAVNVWKSPLAWQITLLMGGQS
                     LIFYSLINWLPEFLLSYDIPVSRAGLYLSLLQIAIIPLTFVTPIYAARLKNQVLPIAF
                     TGVLFTVAILILMFAPRMALVSLIIIGIALGIAFGLVNTLFSLRTESGLTAAKLAGMS
                     QAVGYLFACIGPMFFGILHDWTGQWIVSLSVLLVTGLAIMTIGSRSGRNTTIEKTLEP
                     "
     gene            complement(6383..7393)
                     /locus_tag="PTC08_001651"
     CDS             complement(6383..7393)
                     /locus_tag="PTC08_001651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HoxN/HupN/NixA family nickel/cobalt transporter"
                     /protein_id="HDK5683156.1"
                     /translation="MNNTKNIKHAYPYLGIVILLHIVGIVLMWIGGAQYPLLMSMGVI
                     AYTLGLRHAFDADHIAAIDNTVRKLLQQKQNPMGVGFYFSLGHSSVVFLMAAALGIAV
                     TWAQRHMESFQTTGGLIGTIVSGVFLLLIGILNLVILVQLIQLFRQLRQRNITDAQMD
                     ELIESRGLVMRFVRPLFQFIQKSWHIFPLGFLFGLGFDTASEVSLLALSAGAAQHTVP
                     FLGIIALPILFAAGMSLLDTLDGVLMTNAYHWAFDKPARKIFYNITMTAISVVAALLI
                     GGVEIMQLLGEKWHWKNGFLGWVTQLDFGWLGYALVVVLILSWIIAMVVWKVGRFEER
                     WG"
     gene            complement(7607..9343)
                     /gene="thiC"
                     /locus_tag="PTC08_001652"
     CDS             complement(7607..9343)
                     /gene="thiC"
                     /locus_tag="PTC08_001652"
                     /EC_number="4.1.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomethylpyrimidine synthase ThiC"
                     /protein_id="HDK5683157.1"
                     /translation="MKQEQIELKKNFPASQRIFKQGEDADIQVPFRQIALSETVTEQG
                     TTENEPFIVYDTAGPYHDDTYEVDVTKGIPALRTNWIEDRQDVEHYEGRRVQSIDNGY
                     HSATHKNIVEHPFKYQPRRAQEGKRVTQMYYAKQGIITKEMKFVAARENVSPEFVKDE
                     IARGRAIIPNNINHPESEPMIIGKNFQVKINANIGNSAVSSSIEAEIEKLVWAIHWGA
                     DTMMDLSTGKNIHATREYLIRNSPVPVGTVPIYQALEKVNGIAEDLTWEIYRDTLIEQ
                     AEQGVDYFTIHAGVLLRYVPLTVDRLTGIVSRGGSIMAQWCLAHHEESFLYTHFDEIC
                     QILNRYDIAVSLGDGLRPGSIYDANDESQIAELKTLGELTDIAWEHDVQVMIEGPGHV
                     PMHKIKENQELADFYCKEAPFYTLGPLTTDIAPAYDHITSAIGAAQIASHGTAMLCYV
                     TPKEHLGLPNKDDVRDGVVTYKIAAHAADIAKGLPGATDRDDAISKARFEFRWIDQFN
                     LSLDPERARAFHDETLPAESAKVAHFCSMCGPKFCSMRISHNIRDAHKEKLAGMQEMA
                     EEFKAQGSKIYH"
     regulatory      complement(9540..9643)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
BASE COUNT         2805 a         2081 c         1723 g         3058 t
ORIGIN      
        1 tttaatctag tttttgcaaa cgatattttc tcacaagccg cagatgttta tgaaattaat
       61 ttcaatcata aagttgagag aagaagtatt actgatataa aagaaagtga gttacctaat
      121 gtccccgtag atgttgtgct tggtgggttc ccatgccaaa gttttagcta ctctggaaat
      181 agaggcgggt taagtgatcc acgcggacaa ctatatttgc aaatgattag agtaattaat
      241 cattataagc caaagttgtt tgttgcggaa aatgtagacg gtataagaaa ttcaagaaag
      301 aatcacaaag gggaaaacgt tgatacaact gctcttgata ctatattgca ggattttgat
      361 gatgcaaatt atgatgttca atataaagta ttaaacgctg ctgattatgg agtgcctcaa
      421 tcaagacgaa gagtcattat aataggtatc agaaaagatt tgggctcatc tgaaaatgtt
      481 tactatccag aagcgcagta caatcaaaat ggtgtattaa agccctattg gagaacttct
      541 aaagagggta tagatgattt atgggacaaa ataaatgatc tcacagtatt taaccatact
      601 tatcgtgact atagcaaagc aaaattttat cccggaaaaa aaactcaagg aaacgttaga
      661 atatcgcctg ataaaccagc accaacgatt agagcagaac accatggtaa tattgaagct
      721 cattacagaa ctcttaaaga tgatgaatta gatatgacag gttggagacg cttatctgtt
      781 agagaatgtg caagattaca gtcctttcct gacaactata atttcgtagc atcaaccagc
      841 tcatcttata aaatgattgg taatgctgtt cctcctgtaa tggcatggca tatcgctaaa
      901 tcagtcttat acactcttga aaaattaaaa ttattaaaat caatacctca aacataataa
      961 ttatagtata aaaaagatgt aagtctctac aatacttgca agtgacttac atcttctcta
     1021 tcttatttaa tttaagcgat tattgcggtg tgttaccaaa aaagttgaag atgtttttcg
     1081 cattgtctgt attatcgata ttaccttgga actgatcagc gccaggtcca aatgcatagg
     1141 tgttcacgtc ttcacctgta tgaccgtttg ttgtccaacc tgtattggat tttttgttaa
     1201 tcggtgcttg aatggcgtct tccagttttt gttgttgggc ttcatagtcg tcactttctt
     1261 cgtctaactt cttcaatgca tccgcttctt gttgaatggc gttcaactct ttctcactca
     1321 agtcaaatcc gtatcctgct tgaatcgttt cttctacacc tttaccgtca gcaatttgct
     1381 ctgtcatcca tttgccagaa tgtttcattt gttgaatcgg ctctgggttc cattcgtatg
     1441 cactgccttg tcccatactt aaaccacctg ttgaatggtc agcagtcgca ataacgagtg
     1501 tatccggatg tgatttggcg taatcaatcg cgttcgcaaa tgctttttcg aacccttcca
     1561 tttcggacat gacccctgta atatcgttcg catgaccttg tttatcgata gacgctcctt
     1621 ccaccattaa gaagaaacct ttatcatttt tagaaaggcg ctcaagtgca gcgttttgca
     1681 tgtctaacaa ttcaggttgg tcctcttctg catcaatcgc gagcggcata tttttatccg
     1741 caaacaatcc tagcaattgc tcttcactcg cgttctctaa ttgttggcga ttagtcacca
     1801 caccatagcc atcattttta aactggtccg tgatgtttcc attttccttg ccaaaatatt
     1861 tcgcaccgcc acctaaaatg acgtcgactt tatgttggtt gttaatacgt tgatcataaa
     1921 attgatgggc aatctcatct tttttatcac ggtcatcaac atttgcagta taagcagcgg
     1981 gtgtcgcatc tgtaatttca gcagttgaga ctaaaccggt tgatttgcct aactttttcg
     2041 cacgttcgag tacagtttct aagtcatttt gctttttatc tacaccaatt gcgccattat
     2101 acgttttatg gccagaacta aatgccgttc ctgccgctgc agaatcggta atgttttctt
     2161 tatcatcatc ggaatacgtt tgttgtgtcc ctactaaata atcatcaaaa gctgtgtttt
     2221 ccacttcttt tgtatctgga ttatccgcaa aataacggta tgctgtgttg tacgccggtc
     2281 ccatgccgtc tcccactaag aaaatcacat ttttaggatg gctcgtgtca ccgtacatcg
     2341 tcgcttgttg ctcaggacct tcacctgcac ttgatgcgga tgccacatgt cccgctccta
     2401 atgttgatgc gatcagtgca ctcgcgatgg ataattgtgc aaactgcctt ttaaatttca
     2461 taattgtcat aacccccata gcaaatattc aatacactgc cattgtaatg aaacaattta
     2521 aatatggtgt gaggttatga ttaaaagtat gtaaaaaaag gaagagcagc acctctctcc
     2581 ctacccagtc ccctgtatat aaaaacaaac ctaacatcac tataaaaatc atcataaaag
     2641 gaatgagcca cttaaaaaat tgagaacgta gggatagtgc ggttaatttt tattttttta
     2701 taaatgacaa tgataaaagt caatgctaca tgccaactat ttcttatttt gtgattatca
     2761 tacgaacaat gatttgaatt gcattggaaa tagatgagaa tgtttatttg gcatacaatt
     2821 ttttcgttat attttgcctt ttatagttgt ttccaattct gcaactactt ataatgacaa
     2881 tattaaaaga aataaaggag gttatttttt gaaaagcgac ctcacgtctc gtaaacataa
     2941 acatgctcat ccatcacatc aacaacgtca gcccaagtat gaaccctctc catcatctaa
     3001 tccgaaatgg ctcattgcac tcatcatttt actgattatc attgtacttg gtgggatgat
     3061 atatggcggt taccgtttgt ctcaagtaaa gctccatttg aacactacag ataatcaagc
     3121 gacaaccact caaagcgagc aaaatacagc aaccgttcac ctcgatgtac tgtcatacga
     3181 ctttagccaa gacttcatgc atagtgatca cattgatggt tatcaagact ttcatatcgg
     3241 agagacgcgt aaagatgtcg aggcaaccca tggccctcca gaaaaaactg ttgaaattga
     3301 tggtcgtgac gcggcatcat atggcgacct tgctgtcagt tataatgcac aacaccaagt
     3361 cgaacatatt tatgtcacac cacatcaagt cacaacagca caatttatcg atgttcatca
     3421 agcgcctaac atgacagatg gcaatatatg gtattacgat agtcgccaag acaaccccta
     3481 taccatcaaa gtatacacac aaaacgatca agtcattgcc atcgaaaata ttccgcaaat
     3541 ttaattgcta ataaagtgtc taggaacgcg caacatcgtt cagccatcgg tgcaaatgtt
     3601 aaaaacaaag caaaaaatca cggtcacact tcaaacaacg aagtatggcc gtgattttta
     3661 cattacttta aatgccgtcg tttcacatga aacatcctta tgcttcaact ttttcaaatg
     3721 tccccggatt aaactgaagt ttcgcacgtt ctaatggcca atatctcaca aatgctttgc
     3781 ctacaatacg cttgtgtggc acgagtccta ctgtatacga acgactatcg atactgttca
     3841 tgcgattgtc accaagaacg agataatgtc cctgaggtat cattgtcctt ccctctgagc
     3901 cctcaatatc cgatacatca aagttttcgg ttaaaaattc agctgccttt tcttttttat
     3961 tcacttttaa ataaggttcc tctacctttt gaccattaat atacaattga tcattttcgt
     4021 aagccacgtg atcaccaggt aaacctataa tgcgcttgat aaaatcacgt tccgcatctt
     4081 catggaacac aatcacatcc ccgtgagtta gcgtgttgag cttttttgac agttgattca
     4141 caatgacacg gtcacctgtt tcaaatgtag ggtgcataga ggccccattg accgtgtaag
     4201 gcgtgaaaat caaccattta acaaaaccga caatcactag ggcgattaca attactatga
     4261 tgatatcttt tgtttccttt cgcattctat gcccctttca tgcactcaac tctattccta
     4321 tgttatttaa tttttcataa ctctacaaca cgaggcagtc taccggcacg cttaccgcag
     4381 actcccttca ctattaatat tgaatggtcg ccgtaattct aagctcttca cttgtttgat
     4441 tgcgatacgt atgcgctgta ttagcattaa aactgatggc ttggcccgct tcaatttcat
     4501 aatgtgtgtc tccaacagtg agcgttaaag taccctcgtt cacaataatg tattctttcg
     4561 cgccttcttg atgtgcatct gattcaagta tactgtccgc atccatacgc atacaaaaca
     4621 tttcaaacgc atgtgccgcc tcatatggaa agtacggaaa aacgacgacc gagcgattat
     4681 cattataaat cggctgtatg tctgagcggt ctattttttg aatcgcttca ttttcttcac
     4741 taattaatga ggtcaacgga atacgtaacc catttgcgat tttccacaac gtattgatac
     4801 ttggattcgc tacccctttt tcaatttgac taatcattgt tttactaata ccggtcaact
     4861 gtgcgatttt atctaaactg agacgatgtg cttgacggta atattgtaag ttttctgcaa
     4921 cgactgtgtt aatattttcc atttttgagc accttctatt tacaatatag tgaacatcat
     4981 gtacgatata ctgtgttctt tatatagaac gtttcgtcaa ttatatcaaa tatagagagg
     5041 agttgacacc ttggaacaac aatctaaccg tattaactgg ttacttttta tcggtattat
     5101 gcttattgcc gctaatttaa gagcacctat tacttcagta ggcgtggtat tacccgcgat
     5161 taaagataca ttaaacttat ccaacacagc cgtcagcttt atttccatta ttcctttatt
     5221 agcttttgcg attatttcat cacttgtcgc taaagtcagt caccgtttcg ggatggagcg
     5281 ctcactcttt gtcgctttat tattaattct atttggtgtc atattaagaa gcattacaga
     5341 ggtcagttta ttatatattg ggacaatact gattggtgtc gggattgcat ttgggaatgt
     5401 tcttgcgccc ggtatgatta aatccaaatt tccgtatcgt attggcatta tgacaggtta
     5461 ttatactgtt gtgatgaaca tctttggggc actctcatct tatggtgccg caccgctgct
     5521 taaacattat aattataatg ttgcattagg cagtattggc atcgtcgcgt tcattgctgt
     5581 actcttatgg acgtttcaat tacgtcatca tgcagcacaa aaacaagtcg acctttcaga
     5641 ggctgtcaat gtatggaaat cgccactcgc ttggcaaatt acgctactca tgggtggaca
     5701 gtctcttatt ttctattcac tgattaactg gctaccagaa tttttattat cgtatgatat
     5761 tccggtctca cgtgcaggcc tttatttatc gctattacaa attgcgatta ttccattaac
     5821 ttttgttaca ccgatttatg ccgcacgact taaaaatcaa gtcttaccta tcgcattcac
     5881 tggcgttctc tttactgtag cgattttaat attaatgttt gcgccgcgta tggcacttgt
     5941 ttcgctcatt atcatcggaa tcgcactcgg catcgctttc ggtctcgtga acacattgtt
     6001 tagtttacgt acggaaagcg gtttgacagc agcaaaatta gcgggtatgt ctcaagcagt
     6061 gggctattta ttcgcatgta tcggacccat gttctttggt attttacacg attggactgg
     6121 acaatggatc gtgtcgctat cagtattact cgtgacaggt cttgcgatta tgacaattgg
     6181 atcaagatca ggacgaaaca caactattga aaagacatta gaaccttaac gcttgatttg
     6241 acttagcata ttttcaagtt tctcgagttg ttcttgcatt ctcattactt ttcatccaat
     6301 ttaaaagaca ggcgtggttt gaatgatttt tcaaactgac gtctgtcttt ccgtttgctt
     6361 aaaacgtttt tttatcatga aattaacccc atctttcttc aaagcggccg actttccaca
     6421 cgaccatcgc aataatccat gaaagtatga gcacgacgac taatgcatag ccgagccaac
     6481 cgaaatctag ttgagtcacc cagccgagaa aaccattttt ccaatgccac ttttcaccca
     6541 gtaattgcat gatttctacg ccaccgatta gtagtgcggc aacgactgaa atggctgtca
     6601 tcgtaatgtt atagaagatt ttacgtgcag gtttgtcaaa tgcccaatga tacgcgtttg
     6661 tcatcaatac cccatccaat gtgtctaaca aactcatccc cgccgcaaac aaaataggta
     6721 acgcgataat ccctaaaaac ggtacagtat gttgcgctgc ccccgctgat aatgcgagta
     6781 atgacacttc actcgccgta tcaaaaccaa gcccaaataa gaaacctaat gggaaaatgt
     6841 gccaactttt ttgaataaac tggaagagtg gtcgaacaaa acgcataact aagccacgcg
     6901 attcgatgag ttcatccatt tgtgcgtctg taatatttct ttgacgtaat tgacggaata
     6961 attgaatcag ttgcactaaa atgactaagt ttaaaatacc aattaacaat aaaaagacac
     7021 ctgaaacaat agtaccgatt aatccacctg tcgtttgaaa gctttccata tgacgttgtg
     7081 cccaagtcac cgcaatacct agagcagcgg ccattaagaa aacaacggag gaatgcccta
     7141 atgaaaagta aaaacctaca cccattggat tttgtttttg ttggagtaat ttgcgcacgg
     7201 tattatcaat cgccgcaatg tggtccgcat caaacgcatg acgcaatccg agtgtataag
     7261 caatcacccc catgctcatt aataacggat attgtgcgcc tccaatccac attaatacaa
     7321 taccgacaat atgtaataaa atgacaatgc cgagataagg ataggcatgt ttgatatttt
     7381 ttgtgttatt catttcattt tcacctattt ctattttgag ataataaaat catacaactt
     7441 tttcccataa tttcaaattt ttagctgtaa tacatctata gaaaacattt agagaataat
     7501 gatatttttt atataacaca aaacttgtat acctaccaaa caagcaaaaa taaaatgaat
     7561 agaggctggg aaaactatat tgatcccacc ctcttcctta tttcgattaa tggtaaatct
     7621 tacttccttg tgctttaaat tcttcagcca tttcttgcat ccctgctaat ttttctttat
     7681 gcgcatcacg gatattgtga gaaatacgca ttgaacagaa tttcggtcca cacatactac
     7741 agaaatgcgc cactttagct gattctgccg gcaatgtttc atcatgaaaa gcacgtgcgc
     7801 gttcaggatc aagcgataag ttaaactgat ctatccatct gaattcaaag cgggctttac
     7861 taatcgcatc atctcgatct gtcgcacccg gtaacccttt agcgatgtca gcggcatgtg
     7921 cggcgatttt gtacgtcacg acgccatcac gcacgtcatc tttattcggt aagccgagat
     7981 gctctttagg tgtcacataa cataacatcg ctgtcccatg actcgcgatt tgagctgcac
     8041 caatcgctga tgtgatgtgg tcatatgccg gtgcaatatc ggttgttagc ggtccgagtg
     8101 tataaaatgg cgcttcttta caataaaagt ctgccaactc ttggttttct ttaattttat
     8161 gcatcggtac atgcccaggt ccttctatca tcacttggac atcgtgttcc caagcaatat
     8221 cggtcaattc acctaacgtt ttcagttcag caatttgact ttcatcattt gcatcataaa
     8281 tcgaacccgg acgtaaacca tcacctaatg acaccgcaat atcataacgg ttcaatattt
     8341 gacaaatttc atcaaaatgc gtgtataaaa agctttcttc gtgatgggcc aaacaccatt
     8401 gcgccataat tgagccacca cgagacacga tgcctgttaa acgatccact gttaatggca
     8461 catagcgtaa taagacacct gcatgaatcg taaagtaatc cacaccttgt tcagcttgtt
     8521 caattaaagt atctcgatat atttcccagg ttaagtcttc cgcgataccg ttcacttttt
     8581 ccaacgcttg ataaatcggc accgtaccaa ctggaactgg cgagttacgg attaaatact
     8641 ctcgtgtcgc atgaatgttt tttcctgtcg ataagtccat catcgtatca gccccccaat
     8701 gaatcgccca gactaacttt tcaatttctg cttcaataga ggacgataca gcagagttac
     8761 cgatatttgc attaatcttc acttgaaagt ttttaccgat aatcatgggt tctgattcag
     8821 gatgattgat gttgttcgga ataatcgcgc gccctctcgc aatctcatct ttgacaaatt
     8881 ctggactgac attttcacgt gctgcaacga acttcatttc tttagtgatg ataccttgtt
     8941 tcgcataata catttgtgtc acgcgtttcc cctcttgtgc acgtctcggt tgatatttga
     9001 atggatgttc aacaatattt ttatgcgttg ctgaatggta accattgtcg attgattgca
     9061 cacgacggcc ttcataatgt tcgacatctt gacggtcttc aatccaattt gtgcgcagtg
     9121 ccggaatgcc tttcgtaaca tcgacttcat atgtgtcatc atgataaggc cccgctgtat
     9181 catagacgat gaaaggttca ttttccgttg tcccttgttc agttactgtt tcagacaatg
     9241 cgatttggcg aaatgggact tgaatatccg catcttcacc ttgcttaaaa atacgttgac
     9301 ttgctggaaa gtttttcttt aattcaattt gttcttgttt cattccatta accccctctg
     9361 acttcactaa gaggcattaa caacactgaa aataataggc aaaataaaaa cgcactcaga
     9421 ataattctaa agtgcgtacg aaaacgaacg aatctattaa aatgcgtcaa aagtgagccc
     9481 aaatcatgta tgttgcatca caacacgatt tcgcctgaca aatgcgcacc agtcagtcat
     9541 gaaggtttcg tttgcttccc tacgctagta tgatctagat caggttcaaa gggttgaggc
     9601 gttcacctct ttcagcgcat taatggcacc cctagcaagt tcaattttta gttttacaac
     9661 agtatcg
//
LOCUS       DANHOL010000094         9622 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.095, whole genome shotgun sequence.
ACCESSION   DANHOL010000094 DANHOL010000000
VERSION     DANHOL010000094.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 9622)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9622)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9622
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.095"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            51..680
                     /locus_tag="PTC08_001653"
     CDS             51..680
                     /locus_tag="PTC08_001653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HDK5683158.1"
                     /translation="MTHEQDFQTILTGRRSVKLFDTEVKIPREEMNEMIRKATLAPSS
                     INMQPWRFVVVDTPEGKDTLRPLVQFNSRQNDTSAAMVVIFGDMLNYEHAEEIYGAAV
                     EKGYMPQEVKDDLVGKFVAMYEGLDQQSMNDVVKVDSSLAAMQFMLVAREHGYETNPI
                     GGFNREDIAADLGLDPERYVPVMIIAIGKAAEEGRPTSRLDVERIVQYR"
     gene            1015..1734
                     /locus_tag="PTC08_001654"
     CDS             1015..1734
                     /locus_tag="PTC08_001654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP pyrophosphokinase family protein"
                     /protein_id="HDK5683159.1"
                     /translation="MFVDKNTPFNEESLRQEIAKYMNRDLKDISSIEEIVAFIELEHL
                     YRAALEEISTKLRILDEDFQIKYAHNPIHHMERRVKEIPSLLQKLKRKGYPLTAQAAR
                     ENIMDIAGIRVVCNYIDDIYTVEQLLLKQTDIQLLTRKDYVENPKKNGYRSLHIVISV
                     PIFLTDGMNDTPVEIQLRTIGMDMWASLEHKLHYKNQRGDSEMYCDTLKACAMEIGDV
                     EEKMQRIHLSIQRDREKLGTC"
     gene            complement(2045..2602)
                     /locus_tag="PTC08_001655"
     CDS             complement(2045..2602)
                     /locus_tag="PTC08_001655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HDK5683160.1"
                     /translation="MKQWFFPLLFLSIVIVIAVTVVMHYDAIQHETSNRYHTLSDSFF
                     NQDRKTHGFGTYNRDLSFNGDNRHYGNDYRLPEDTSVLAPTNGTVTRTFKDKLGGNVL
                     EIREDNGQYFQWFMHLNEFKVKAGDTVAAGDVIALSGNTGEQTTGPHLHFQRMHGGVG
                     NRFAEDPDDFVDQLPDQQRSLYRLN"
     gene            complement(2770..3483)
                     /locus_tag="PTC08_001656"
     CDS             complement(2770..3483)
                     /locus_tag="PTC08_001656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase"
                     /protein_id="HDK5683161.1"
                     /translation="MKKSLLLTTTLAATIGTAGLAASGHDANAAEQGIDQVKLAAMAQ
                     HNDPSLNQHPIEEGSYEYNFTLDGVSYNFWSNGVQFGWSYNGFGQATQDYSSIAQPTQ
                     MADVSGLASQQSYSNGPSTTQQATSQAPKQQTAPSYTTQSTSTRSVKLANGNTAGAIG
                     TRAAQEMASRTGVSASVWETIIARESNGQLGAQNSMGSGASGLFQTMPGWGPTNTYEE
                     QIAAATKAYNAQGLSAWGM"
     gene            3905..5323
                     /locus_tag="PTC08_001657"
     CDS             3905..5323
                     /locus_tag="PTC08_001657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020366330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate--AMP phosphotransferase"
                     /protein_id="HDK5683162.1"
                     /translation="MMKKLDTLRLEIARLTRQTHALGIPMMIIFEGVPASGKTRLTNE
                     LLLNLDAKYTKFIATKTPSEYDLRYPFLQRFWETLPEKGHINIYFRSWYSHYVDYQVH
                     QIKYPLFKNPQILKSEIDDFETMLDNDHHEMIKFFIQINEDKRQEHIAQMKTNPLTSW
                     KAQEYEQVVAPDTYLEYMQPLLDDSWEVIDYDEREKALVQMYTHIHERLTQAISRHEQ
                     RDTHRDGRFSDTFETDLFDNKQTKISKEDYKEKLTALQKRMRELQFALYERKIPLVLV
                     YEGMDAAGKGGNIKRVRELLDPTGYEVNAVSAPTDVELSHHYLWRFAQTMPKSGHIGI
                     FDRSWYGRVLVERVEGFATEKEWSRAYDEINAFEKMWTDDGAIILKFFLSLDKDEQLK
                     RFKAREIDVDKQWKITDEDWRNRDKWDQYLEASYDMIQKTDTADAPWLVVAADHKKTA
                     RIEVLKYIIQKCEEKLWGVQQY"
     gene            5427..6302
                     /locus_tag="PTC08_001658"
     CDS             5427..6302
                     /locus_tag="PTC08_001658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019164951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HDK5683163.1"
                     /translation="MSLANYETNIMKLSQSNDAGLEVAIMGKQETDKAVVLLHGAIMN
                     YKIMTIFAKYIHDVKLIFINCPGRGKSTSLERQDYDLSEYAKRINEALVTIVEASHIS
                     EMSMIGYSMGGLIATKLAGYNTLPIKHLIYLNSAAKIDYKELRFSKLLYEIMKDVKPG
                     ERNEMINSIPEFVLSQGVSKKQKEGFNFSQYFAPMETMITDLMYTLRADYLADIDKIK
                     EMPKVLFLLGEDDVIFPNKDSKITHEKFEALGADVQSIIYPDVGHLDFLRVLDDSSIA
                     EQDSMTYHINQLLAE"
     gene            complement(6384..6593)
                     /locus_tag="PTC08_001659"
     CDS             complement(6384..6593)
                     /locus_tag="PTC08_001659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683164.1"
                     /translation="MRVLLRAAIAIGVILFAAHYFQDNDNLAAVENYKNDIVQSSYVQ
                     DFLNSQALQKIEHLEFEDLLPSDFF"
     gene            6780..7904
                     /locus_tag="PTC08_001660"
     CDS             6780..7904
                     /locus_tag="PTC08_001660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683165.1"
                     /translation="MKVTFEAIRHQQGWIEAVYYDERHEGTIRFEMADPIEVRDDLVA
                     EALAALCGQYYDMIEMEWKVSQRTKRQIEQRTGAKLICKGRMLFWNINTIMRHDIKTL
                     NFNGDVYNLSAFALTPGDVNAVSLDFGWESAHMYDMFDEWQSRIVKTNVMETHFPLIT
                     SDYYMIGSILYKDFFNTTYMVTGMQLNPLTVNMTKMEAEQAIAGMVNLPHSLGLTAVG
                     HTKIACQRWPHMLEQACRAVRTSQPHIGVQQRLLIDVENERGRLGLGAYANQVQPTEI
                     AWGTDERLDFLALYLLKYGGRAQAEKLVQHIPLEADALVQQCDFQFYDRYYPGVMHYM
                     DKSIREAVQQQLEKYGIVMMSESDWQNFMAVRTWIQQTRR"
     gene            complement(8111..9619)
                     /locus_tag="PTC08_001661"
     CDS             complement(8111..9619)
                     /locus_tag="PTC08_001661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001225028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase M4 family protein"
                     /protein_id="HDK5683166.1"
                     /translation="MSKKVLFGTLCLSVLSLSPNVYAESSSEKPLEKNFKTTVKSKAD
                     ANKALKELPSDVKDNYKDYDVVDALTDDLGYTHYTLQPVADGVHAKDQEVKVHVDKKG
                     QVVLINGEVNAEKVDPTNSVSISKDAALSTAFKAVDMKQSEASNLDEDVVKVNDVEID
                     GEDNKYVYHVELVTMEPDVSHWDLKVDAETGEVVEKTDLVAHAAATGTGRGVLGDTKR
                     ININSIDGGYSLEDVTGSAVMATYAFNPASGSADLITDPDTNFTDDYQRAGVDANYYA
                     KKVYDYYASKFDRRSYDNRDSDIMSIVHVNNFQGQDNRNNAAWIGDKMIYGDGDGTTF
                     TALSGADDVVAHEITHGVTQETAGLIYRGQPGALNESMSDTFAYFMDPGDTLIGEDVY
                     TPRRPGDALRSMSNPEQFNQPGHMRDYVNTSSDHGGVHTNSGIPNKAAYLTANKIGQE
                     QAEQIYYRALTSYLTSTSNFADAKASLVRAALDLYGEDVARQVEAAWEEVGV"
BASE COUNT         3008 a         1675 c         2028 g         2911 t
ORIGIN      
        1 cgcactttat ttaatgaaat gtttacatta taaaaggaaa ggtgactatt atgacacacg
       61 aacaagattt tcaaacaatc cttacaggcc gtcgctctgt taagttattc gatacagaag
      121 taaagattcc acgtgaagaa atgaatgaaa tgattagaaa ggcaacatta gcaccgtcat
      181 caattaacat gcaaccttgg cgttttgttg ttgtggatac tccagaaggt aaagatacat
      241 tacgtccact cgtacaattc aatagccgtc aaaatgatac ttcagcagcg atggttgtca
      301 tttttggtga tatgttgaat tatgaacatg ctgaagaaat ttacggggca gccgttgaaa
      361 aagggtatat gcctcaagaa gtcaaggacg atttagtagg caaatttgtc gcaatgtatg
      421 aagggctaga tcaacaatct atgaatgacg ttgttaaagt cgatagtagt ttagcggcaa
      481 tgcagttcat gctcgttgca cgtgaacatg gttatgaaac aaatccaatc ggtggcttta
      541 accgtgaaga cattgcagca gaccttggtt tagaccctga acgttatgta ccagtcatga
      601 tcatcgctat cggtaaagca gctgaagaag gtcgtccaac atcacgctta gatgttgaaa
      661 gaattgtaca atatcgttaa aaataaacat actttaagag atacagttga gtgatgtcca
      721 ttcaactgta tttttttgca acgcttcatc taaagtgaca aacatgatgc atgctacacg
      781 aaagacacaa agtttttagt cgaacgcaca acgacttaag caccttcaaa tcataaaaaa
      841 acgtgatttt atctaaaaat tcattgcttc aaggacaagt ttttatcaca tttttaaatt
      901 tcactgcagc tttaaggaaa agtagtaaag gactattgaa cctgatatga tgatgaaaga
      961 taacatagca tttaggacct tgattttaaa tatagttatg ttgaggtgaa agaaatgttc
     1021 gtagataaaa acacaccttt taatgaagaa agtttaagac aagaaatcgc taaatatatg
     1081 aaccgtgatt tgaaggacat tagtagtatt gaagaaattg tcgcatttat tgaactagaa
     1141 catttatatc gtgcggcttt agaagaaatt agtacaaagt tgcgtatttt ggacgaagat
     1201 ttccaaatta aatatgcaca taatccgatt catcatatgg aacgtcgggt caaagagatt
     1261 ccgagcttat tgcaaaaact aaaaagaaaa ggctatccgc tgacagcaca agccgcaaga
     1321 gaaaatatta tggatattgc cggtattcgc gttgtttgta actatattga cgacatttat
     1381 accgtcgaac aattgttgtt gaaacaaacc gatattcaat tattgacgcg aaaagattat
     1441 gttgaaaatc caaagaaaaa tggctataga agtttgcata ttgtcatttc tgtcccgatt
     1501 tttctcacag atggtatgaa cgacacgcct gtagaaatcc aattgcgcac tattggaatg
     1561 gacatgtggg cgagtttaga gcacaagttg cattataaaa atcaacgtgg tgattctgag
     1621 atgtattgtg atacgttgaa agcgtgcgcg atggaaattg gtgatgtgga ggagaaaatg
     1681 caacgaattc atttgagtat ccagcgtgac agagaaaaat tagggacctg ttgatatgtg
     1741 tagatttctt taaacatttt ccctttccta aggggcttgc gcggttttga taatctggat
     1801 ggaccttact cttatgtgac gctatacatc aagaatacat cccaattttt ttccaatagt
     1861 caatttaaat ttaatcaagt ttcttaccat tctaggcatg atagttgaaa cgttacagcc
     1921 attttgttga tcttgtctta tattttattt tcactgaaca gaatgggaag taagaaacat
     1981 gaaaaaacag gtgctaaaag gaatataacc ttaaagcacc tgttttttat tttatcagtc
     2041 tcatctagtt caatcgataa agactacgct gttgatctgg aagttggtcg acaaagtcat
     2101 cggggtcttc agcgaaacga ttgcctacgc ccccatgcat tcgttgaaaa tggagatgag
     2161 gtcctgtcgt ttgttcgccc gtatttccgg acaatgcaat gacgtcaccg gcagctacag
     2221 tatcgcctgc tttcactttg aattcattta aatgcatgaa ccattgaaag tattgaccat
     2281 tatcttcgcg gatttctaac acattgccac cgagtttgtc tttgaaagtt cttgttacag
     2341 tgccattcgt aggtgcaagg acagatgtat cttcgggtaa acggtaatca ttaccgtaat
     2401 gtcggttgtc gccgttgaaa gatagatcgc gattgtacgt gccaaagccg tgtgttttac
     2461 ggtcttgatt gaaaaatgag tcagataagg tatgatatct gttcgatgtt tcgtgctgaa
     2521 ttgcatcgta atgcatgaca actgtgacag ctatcacaat aacgatgctt aaaaagagca
     2581 gaggaaaaaa ccattgcttc ataagctcac cttgttttta agattgtttt ctattgtata
     2641 aggcgctgta tatcaatgca atgattttga ctgaaaagtg atttagatgt tagtcaagag
     2701 aggcgaaaca ataaaaaaag aacgtgaagt gtgtgacaca cttcacgttc ttttaatgtt
     2761 atatgaagat tacatacccc aagcagataa accttgtgca ttgtaagctt ttgtagctgc
     2821 agcaatttgt tcttcataag tgtttgttgg accccaacca ggcatagttt ggaataaacc
     2881 agatgcgcca gaacccatag aattttgagc acctaattga ccatttgatt cacgtgcaat
     2941 aattgtttcc catactgatg cagaaacacc tgtacggctt gccatttctt gcgcagctct
     3001 tgtaccaata gcaccagcag tgttaccatt agctaattta actgaacgag ttgatgttga
     3061 ttgtgttgtg tatgatggag ctgtttgttg ttttggtgct tgactagtcg cttgttgcgt
     3121 tgttgatgga ccattgctgt aagattgttg tgaagctagt ccacttacgt cagccatttg
     3181 tgttggttgt gcaattgatg agtagtcttg tgttgcttga ccaaaaccat tgtatgacca
     3241 accgaattgt acaccgtttg accaaaagtt atatgataca ccgtctaaag tgaagttgta
     3301 ttcgtatgaa ccttcttcaa ttgggtgttg gtttaatgat ggatcgttgt gttgcgccat
     3361 tgctgctaat ttaacttgat caatcccttg ttctgctgca tttgcatcat gtccgcttgc
     3421 tgctaatcct gctgttccga ttgttgctgc aagtgtagta gttaagagta atgatttttt
     3481 cataataaat aagtcctcca gtaaagtaag ttttatatat tcattttcaa aagtatgcgt
     3541 aattaaaaaa ttcaacaatc acactctacc aacgaaatgc cattttgtaa attacgcgta
     3601 attaacaaaa cattacaatc gtttttcatt ttgctgtttt gtaacataaa tgtcatgttg
     3661 ttaaaaagtt gttcatcact attcatgctg ataaaggtga ttatagcaag ggttatagga
     3721 atattttatg aattaataaa aatcgacata tattacaaat attacaagat aaagttgaat
     3781 tgtaatgaaa caaggggaga ttttgggata aaaaaagagc ttgtcaatat attcatgatg
     3841 taaaaaagat attccattgc tcattttgaa acgacttata tataataaga gtaacgaggt
     3901 gagaatgatg aaaaaactgg atacgttacg tttagaaatt gcgagattaa cacgacaaac
     3961 acatgcactc ggtataccaa tgatgattat ttttgaaggg gtgcctgctt cgggaaaaac
     4021 gagattaacg aacgagttgt tgctcaattt agatgcaaag tacacaaaat ttatcgcgac
     4081 gaaaacacca tcagagtatg atttaaggta cccattttta cagcgctttt gggaaacttt
     4141 acctgaaaaa ggtcacatta atatttattt tagaagttgg tattcacact atgtggatta
     4201 tcaagtgcat caaatcaaat atccgttgtt taaaaaccca caaattttaa agtctgaaat
     4261 agatgacttt gaaacgatgc tagacaatga tcaccatgaa atgattaagt ttttcattca
     4321 aattaatgaa gacaagcgcc aagaacatat tgcgcaaatg aagacgaacc cattaacgag
     4381 ttggaaagca caagaatatg aacaagttgt tgcaccggat acctatttag agtacatgca
     4441 accgttattg gatgattcat gggaagtgat tgattacgat gaacgtgaaa aagcgctcgt
     4501 tcaaatgtac acacatattc atgagcgttt gacacaagcc atttcacgtc atgaacaacg
     4561 tgacacacat cgagacggcc gtttttctga tacatttgaa accgacttat ttgataataa
     4621 gcaaactaaa atttcgaaag aggactataa agagaagttg acagcgttac aaaaacgaat
     4681 gcgcgaactt caatttgctt tatatgaacg aaaaattccg ctcgtgctcg tatatgaagg
     4741 tatggatgca gctggtaaag gggggaacat taaacgtgtt cgtgagttgc tcgatccaac
     4801 tggttatgaa gtcaatgccg tgagtgcgcc gacagatgtt gagttaagtc atcattattt
     4861 atggcgtttc gcacaaacga tgccgaaaag tggtcacatt ggaatttttg accgcagttg
     4921 gtatggtcgt gtgttagtcg agcgtgtgga aggttttgcg actgagaaag agtggtctcg
     4981 cgcttatgat gaaattaacg cgttcgaaaa aatgtggacg gatgatggcg caattatttt
     5041 gaagttcttc ctttctttag ataaagacga gcaattgaaa agatttaaag cgcgtgagat
     5101 agacgtagat aaacagtgga aaattacgga tgaagattgg cgaaaccgtg ataagtggga
     5161 ccaatatctt gaagcgagtt atgatatgat tcaaaaaaca gatactgcag atgcaccgtg
     5221 gcttgtcgtg gctgcggatc ataaaaagac agcgcgtatt gaagtgttaa agtatatcat
     5281 tcaaaaatgt gaagaaaagc tttggggtgt gcaacaatat taagaaaatc agactcaagc
     5341 ccttttttat tgtgatggtt ttctactata atatagaggc atatcaccca cgcgtaaaag
     5401 aatagaactg agatagagga aaaaatatgt cactagctaa ttatgaaaca aatattatga
     5461 aattatcaca gtcaaacgat gcaggattag aagtcgcaat catggggaaa caagagacag
     5521 ataaagctgt tgtactgctt catggtgcga ttatgaatta taagattatg acgatctttg
     5581 cgaaatacat tcatgatgtc aaactgattt ttatcaactg tcctggtcgc ggaaaaagta
     5641 cgagtcttga acgccaagat tatgaccttt ctgaatatgc gaaacgaatt aacgaagcgc
     5701 ttgtcactat tgttgaggct tctcacattt cagaaatgtc catgattggt tattcgatgg
     5761 gcggattaat tgcgacaaaa cttgcgggat acaacacgct accgattaaa catttaatct
     5821 atttaaatag tgccgccaaa atcgattata aagagttgcg tttttctaaa ttattgtatg
     5881 aaattatgaa agacgtcaaa cctggtgagc gaaatgaaat gatcaacagt attcctgaat
     5941 tcgtattgtc tcaaggcgtt tctaaaaaac agaaagaagg ctttaacttt tctcaatatt
     6001 tcgcgccaat ggaaacgatg attacagatt taatgtacac gttacgtgca gattatttgg
     6061 cagatattga taaaattaaa gaaatgccca aagtgctctt tttactcggt gaagatgacg
     6121 tgatctttcc gaataaggac tcgaaaatta cccatgaaaa gttcgaggca ttaggtgctg
     6181 acgtccaatc aatcatttat ccggatgtgg ggcatttaga ctttttacgt gtgcttgatg
     6241 attcgagtat cgcagaacaa gacagtatga cttatcacat taatcaactc ttggcagaat
     6301 gatgagtaag gtgaaatcaa aaatgcgcat ttgagctttg tctaacaaag tgtcgatgcg
     6361 cattttttta gtttgatatt cagttaaaag aaatcagaag gcaataaatc ttcaaattcc
     6421 aaatgctcta ttttttgcag agcttgactg tttaaaaagt cttgtacata agaagactga
     6481 acaatatcat ttttgtaatt ttcgacagcc gctaagttgt cattatcttg aaaatagtgt
     6541 gctgcaaata ggatcacacc gatcgcaatg gcagcacgta aaagaacacg cattgtagaa
     6601 acctccttgt cgcatgataa tttaaggata catgaatcgc aatcatgtgg catgcgtcta
     6661 gagcaacaat tcgctctcca actttagcat gagcatacga caatcaaacg tcgctttaca
     6721 tcaaattaac atcattacgt tacgataaaa caaaagaaga atcaaaggag gcgcatgatg
     6781 tgaaagtgac gttcgaagcg attcgacatc agcaagggtg gattgaagct gtttattatg
     6841 atgagagaca tgaaggcacg attcgatttg aaatggcaga ccctatcgaa gtgcgcgatg
     6901 atttggtagc ggaagcattg gcagcgcttt gtggtcagta ctatgacatg attgagatgg
     6961 agtggaaagt ctctcaacga acgaaacgac agattgaaca acgcacgggt gccaagctga
     7021 tttgtaaagg gcgtatgctc ttttggaata ttaatacaat aatgcgacat gatatcaaaa
     7081 cgctcaattt taacggggat gtatataatt tgtccgcatt tgcactgacg ccaggtgatg
     7141 tgaatgcagt gtcactcgat tttggttggg aatctgcaca tatgtatgac atgtttgatg
     7201 aatggcaaag tcgcatcgtg aaaacgaatg tgatggagac gcattttcct ttgattactt
     7261 cagattatta tatgataggc agtattttgt acaaagactt tttcaatacc acttatatgg
     7321 tgactgggat gcagttgaat ccattgacag tgaacatgac gaaaatggag gctgaacagg
     7381 cgattgcagg catggtgaac ttgcctcatt cgctagggtt aactgcagtg gggcatacga
     7441 aaattgcttg tcaacgttgg ccccatatgc ttgaacaggc gtgtcgtgcg gtgagaacgt
     7501 cgcaaccgca tatcggtgta caacaacgtc tccttataga tgttgaaaat gaacggggac
     7561 gtctcggatt aggtgcgtat gccaatcaag tgcaaccgac agaaatcgct tggggaacgg
     7621 acgaacgatt ggacttttta gcactctacc tattgaaata tggtggtagg gcgcaagcgg
     7681 aaaagttagt ccaacatatc ccattagaag cggatgccct tgttcaacaa tgcgattttc
     7741 aattttatga ccgttattat cccggggtaa tgcattatat ggataagtct atacgtgagg
     7801 cagtccaaca acagttagaa aaatatggca ttgtgatgat gagtgagtcg gattggcaaa
     7861 attttatggc ggtcagaacg tggatacaac aaacaagaag gtaaaagcgt agtaagagac
     7921 tgggaaaaca taatgtccca gtctcttact gtttaagggg gttaaggtag ggttgatatg
     7981 attgtccgag aaatccgccc acaacgcttc tatgtcgctt ttaaccttag cgtcgtctcg
     8041 ttggattgtg gcattggaat tcatcggata atttgtgttg taactcagtt gtcatgatta
     8101 aggcaagcaa ttatacgcct acttcttccc atgcagcttc gacttgcctc gctacatctt
     8161 caccatataa atctaatgca gcacgaacta atgacgcttt ggcatctgca aaatttgaag
     8221 tagaagttaa gtaagatgtt aatgctctgt aataaatttg ttcagcttgt tcttgaccga
     8281 ttttattagc agtaaggtaa gcagctttat ttggaatgcc tgagttcgta tgtacgccac
     8341 catggtcact tgacgtgttg acatagtctc tcatatggcc cggttggtta aattgttctg
     8401 gatttgacat gctgcgtaat gcatcacctg ggcgtcttgg tgtatacaca tcttcaccga
     8461 ttaaagtatc gcccggatcc ataaagtaag caaatgtgtc agacatactt tcgttcaaag
     8521 cacctggttg gccacggtaa attagtccag ctgtctcttg tgttacaccg tgtgtaattt
     8581 cgtgagcaac gacgtcatct gcaccagata aagctgtaaa tgtagtgcca tcgccgtcac
     8641 cgtaaatcat tttgtcacca atccaagcag cattgttacg gttgtcttga ccttggaagt
     8701 tattgacatg cacaattgac ataatatcac tgtctctgtt gtcataagaa cgacgatcaa
     8761 attttgatgc gtagtagtca tatacttttt tcgcgtaata gttcgcatca acacctgcgc
     8821 gttggtagtc atctgtaaag tttgtgtctg ggtctgtaat taagtctgca gaacctgacg
     8881 cagggttaaa agcatacgta gccattactg cagaacctgt cacatcttct aatgaataac
     8941 caccatcaat agagttgatg ttaatacgtt tagtgtcacc aagaacacct cgaccagtac
     9001 ctgttgcagc tgcatgggca actaagtctg ttttttctac aacttctcct gtttcggcat
     9061 caactttaag atcccagtgt gacacatcgg gttccattgt tactaattct acatgataaa
     9121 cgtatttgtt gtcttcacca tcaatttcga catcattgac tttaacgaca tcttcatcta
     9181 agttggatgc ttcagattgt ttcatatcta cagctttaaa ggcagttgaa agggcagcat
     9241 ctttagaaat acttacgctg tttgttggat cgactttttc tgcgtttact tccccgttaa
     9301 tgagtaccac ttgtcctttt ttgtcaacgt ggacttttac ctcttgatct ttcgcatgca
     9361 ctccatcggc aacaggttga agtgtgtagt gtgtataacc aaggtcgtca gtgagtgcgt
     9421 cgactacatc gtaatcctta taattgtctt tcacatcact tggcaattct tttaaggctt
     9481 tgtttgcatc tgctttcgat ttaacggtgg ttttaaagtt tttctctagt ggcttttccg
     9541 acgacgattc agcatataca tttggagata aagataatac tgataaacat aaagtaccaa
     9601 ataaaacctt ttttgacaat tt
//
LOCUS       DANHOL010000095         9585 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.096, whole genome shotgun sequence.
ACCESSION   DANHOL010000095 DANHOL010000000
VERSION     DANHOL010000095.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 9585)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9585)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9585
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.096"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(184..1416)
                     /locus_tag="PTC08_001662"
     CDS             complement(184..1416)
                     /locus_tag="PTC08_001662"
                     /EC_number="3.5.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylornithine deacetylase"
                     /protein_id="HDK5683167.1"
                     /translation="MEQRQYEILETLITHPTVSPPARNTVLLQRQIASWLEDIGFEVQ
                     TIPFYDNDCIVVGTLKGRNPEAARLILNGHVDVAEVEDEQFWRFNPFQLTAEDDFLFG
                     RGVADMKGGMSALFYNLERLHQEGLQPEGDIIVHSVVGEEVGEAGTKVACEHSPKADL
                     ALVLDTSNNIAMGQGGVITGWITIQSEETIHDGARSHIIHAGGGRHGASAIEKMIKII
                     QALQELERHWAVTKSYPGMPPGANTINPAVIEGGRHPAFIADQCRLWITVHYLPDESY
                     ATIIEEIETYLNKIADSDLWLSQNPLQFEWGGASMIEEKGEIFPSFTLPTSHPGFHML
                     AKAHEDVHQAPLQTTMSTTVTDGGWTADFGIPTILYGPGELDEAHGTNEKIRIQDLDY
                     FTEVLYTFLKSWYEKPER"
     gene            complement(1397..1918)
                     /locus_tag="PTC08_001663"
     CDS             complement(1397..1918)
                     /locus_tag="PTC08_001663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HDK5683168.1"
                     /translation="MSFYFQHIDTPLGLMTAVVNDDALLGLSFTDSKDYHTALKNFQK
                     QARLIQISYHPIVNQIALELEAYFHGHCHTFKTPVAHVIGTPFQQQVWQALQQLPFGA
                     VVNYSDIAQMIGRPKSVRAVASAIGQNPLSIIVPCHRVLRKDGQLGGFNSGLHRKKHL
                     LALEGEHYGTATI"
     gene            complement(1934..2758)
                     /locus_tag="PTC08_001664"
     CDS             complement(1934..2758)
                     /locus_tag="PTC08_001664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HDK5683169.1"
                     /translation="MDIQSRQPQQFLTKASGYLKDYTHTLNPYMGCQFACTYCYVRRS
                     PISLFSGKTWGDWVTAKTDEQLKFRKELQKNKAKGPFTVFMSSSTDPYQPLEKKYEMT
                     RYLLSEMHDCPPDFLFIQTRSPLIQRDIDILQSYPGNFIVSMTVESDREDIIRHFTPK
                     APSIQSRLKTVDKLRAAHIPTQIVVAPVLPCTNQFGERLAKHVDRVTIDDYFMGDGSN
                     GRRTQSLGIQSLYEDFDLQSWYHPDTYLHVLKLMQDAFPHDNIAISSNGFVPFQSN"
     gene            complement(2817..4106)
                     /locus_tag="PTC08_001665"
     CDS             complement(2817..4106)
                     /locus_tag="PTC08_001665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HDK5683170.1"
                     /translation="MNPLALQLNEQLSEENPVVLDMLSDLGTNMYYPKGILTQSAEAK
                     ATKYNATIGMATTAEGKMYTETLYGMFDHLTTDEVFAYAPPQGLAELRELWQQKMLKE
                     NPDLTQEAMSLPIVTNALTHGLSLIGDLFVNPGDTVLLPQHNWGNYNLVYGIRHQATM
                     QTYPIFDAQGHFTIEHLVKTLDQFEEDKVIMLLNYPNNPTGYTPTTDEVEAIVQAIDR
                     LAKRGVNVVAVVDDAYYGLFYEDVYTQSIFTALTRLNNERVLPIRLDGATKEFFAWGF
                     RVGFLTFGTTNDTTKTVLEAKMKGLIRSNNSSGATPSQAAVQHALKQRASFNDEVQHN
                     IQILQARYEVTKELVYDEAYQSLWQPYDFNSGYFMALKVKGVNAEELRVHLIEKHSIG
                     IVALNETDIRIAFSCIEKEDLPHVFKSIATAIETLQA"
     gene            4709..4882
                     /locus_tag="PTC08_001666"
     CDS             4709..4882
                     /locus_tag="PTC08_001666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683171.1"
                     /translation="MKHLTKVFVIIALLIFVIGIILQFLREETSAIKLFIATILFMIC
                     AFISRHNDRKKQR"
     gene            5326..6201
                     /locus_tag="PTC08_001667"
     CDS             5326..6201
                     /locus_tag="PTC08_001667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDK5683172.1"
                     /translation="MELKQITKQYGNNTVIDRVDFAFNDSKIVGLIGKNGVGKTTLMK
                     IMNGNIINYQGDVQVVNDDKIGYLIEHPKLYDNKSGLYNLKLFAQVLGTGFDKAYTNH
                     IIKAFGMESYIKKKVKKYSMGMKQKLAIAVSLMNKPKFLILDEPTNGMDPDGSIDVLK
                     TIEQLVQQLDMKILISSHKLEDIELICDRAVFLRDGHFVQDVNMAEGQSTAQTIIQVD
                     PDDFEQALYYLTDHFKVVQSQKESGEIILNVQSDYRNFLKGLAQKGIFPQYIETRKVS
                     LRDTYFNINQRGGQS"
     gene            6198..6926
                     /locus_tag="PTC08_001668"
     CDS             6198..6926
                     /locus_tag="PTC08_001668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001830379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HDK5683173.1"
                     /translation="MNILQLFKFDIVSILKSPLTYLAILLGIAPLLITVIILVTNDNP
                     VNANTMFSVGKWFFSLIGLLFVIKTITRDTAQGTIQLFLNQTQSRIGYFIAKTLSIIF
                     ISIFTTAVVVLVTYLIQWSTDGKDLDNDQSWKLLVFYLILFFVYGLLLFLINLIVQKP
                     ALVYTLGILLLLLLPVVKPFIPLIPEIGDNIQDSLKYIPFSYLSDKTLGNGVTFTNWQ
                     WVINVGSIVVLWLANLALIAKKDI"
     gene            7344..8021
                     /locus_tag="PTC08_001669"
     CDS             7344..8021
                     /locus_tag="PTC08_001669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HDK5683174.1"
                     /translation="MEIPKQWLTYLSKGEAIAATLRLSIMSGERATHKLLTENQVANE
                     FQVSRSPVRDAFKILAQERLIRLERMGAEIIPFTDKQRQELTDIRLMIESFAFTKVIQ
                     RSDWMEIVKSMQQALAMMQVNIQYKDAASFAENDLKFHELMVLACDHHYLTHLWQQIM
                     PTMLCLNYMSMKKRMDENFEDFERVIQNHELFVTAIAQKDRKMMYEAFEANFNDLNND
                     IGAFWAQ"
     gene            8045..>9585
                     /gene="gntK"
                     /locus_tag="PTC08_001670"
     CDS             8045..>9585
                     /gene="gntK"
                     /locus_tag="PTC08_001670"
                     /EC_number="2.7.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconokinase"
                     /protein_id="HDK5683175.1"
                     /translation="MEKYMIGVDIGTTSTKAVLFNTDGGVQQKAQIEYPLHTPRVDVS
                     EQDPDIIVNAVTETIAEVVRKGDVQHEALQFISFSAQMHSLLLIDEFEHPMTKSMTWA
                     DNRARFAAEDLLNHHDGHGIYRRTGTPIHAMSPLSKLWWLKQDENELFETATRYVDIK
                     SYVLYQLTGEWVMDASIASATGLYHLQNKTWDEKVLSLLDIPPSKLPTLVSTTHQLRL
                     KDDYIAEKLGLRRDLPIIAGASDGVLSNLGVNSFEPGDVAITIGTSGAIRTVVDHPVI
                     DEKGRIFCYVLDDEHYVIGGPVNNGGVVLRWLRDELLASEIETAKRLGIETYDVMSRI
                     AQNVQPGAQGLLFHPYLTGERAPLWTSDARGSFIGLTLSHQKEHMIRAVMEGVLFNLY
                     TVFLALIEVIGTSPQSIKATGGFSKSHLWRQMMADIFNTNVEIPKSYESSCLGACVLG
                     LKALGQIDNYDIVKSWVGATHQHHPEAVHVNVYQKLASIFIQISRDLSPSYQTLAQFQ
                     RDLEN"
BASE COUNT         2948 a         1682 c         1933 g         3022 t
ORIGIN      
        1 gaatcaattt ttaacattta tgaggcaatt aggttattaa gtttgagata tgtgatgcta
       61 gaatgacatc atactcgtta tgatatagcc tcatcacact tcataacaaa ataaaaacca
      121 ctttactaaa tgatgtcacg acatttggaa agtggttttt acgtattgtg aaaatgttta
      181 cgattaccgc tcaggtttct cataccatga ttttaaaaat gtatacaaga cttccgtaaa
      241 ataatccaaa tcttgaatgc gaattttttc attcgttcca tgggcttcgt cgagttcacc
      301 tggtccatat aaaatggttg gaatgccaaa gtctgcggtc caaccgccat ctgttactgt
      361 tgtgctcatt gtcgtttgaa gcggtgcctg gtgtacgtct tcatgtgctt tagctaacat
      421 gtgaaatcca ggatgagatg tcggtaaagt gaagcttggg aagatttcac ctttctcttc
      481 aatcatggaa gcgccacccc attcgaattg aagtggattt tgactaagcc ataaatcact
      541 atcggcaatt ttatttaaat acgtttcaat ttcttctata atggtggcgt aactttcgtc
      601 aggcaaataa tgcacggtaa tccataagcg acattggtca gcgataaaag caggatgacg
      661 cccgccttca attacagctg gattaatcgt attggcgcct ggtggcatgc cgggataaga
      721 tttcgtaact gcccaatgcc gttcgagttc ttgtaaggct tgtatgattt ttatcatttt
      781 ttcaatcgca ctcgcaccat gacgaccacc acctgcgtga atgatatgac tgcgcgcacc
      841 gtcatggatc gtctcctcac tttgaattgt gatccatccg gtaatgacgc cgccttgtcc
      901 catcgcaatg ttattgcttg tatctaacac aagtgctaaa tcagcttttg gtgaatgttc
      961 acaggcgact tttgtacctg cttcgccaac ttcttcgccg acaacagagt gtacgataat
     1021 atcgccttca ggttgtaagc cttcttggtg caagcgttct aaattataaa aaagggcgga
     1081 catgccacct ttcatatcag caacgcctct accaaataga aaatcatctt ctgcagtcag
     1141 ttgaaaagga ttgaagcgcc aaaattgttc atcttcaact tctgcaacat cgacatgccc
     1201 gtttaaaatc agacgtgctg cttccggatt ccgtcctttt aaagtgccga cgacgataca
     1261 gtcattgtca taaaatggaa tcgtttggac ttcaaaacct atgtcttcga gccaagatgc
     1321 aatttgacgt tgtaacagga cggtattgcg ggcaggagga ctcacagttg gatgtgtaat
     1381 gagtgtttca agaatttcat attgtcgctg ttccataatg ctcaccttcc aatgctaata
     1441 agtgtttttt acgatgcagg ccactattaa aaccacctaa ttggccatct ttccgtaaga
     1501 cacgatgaca cggcacgata atagacaacg gattttgacc gatagcagat gccacagcac
     1561 gtacactttt tggacggcca atcatttgtg cgatgtcact ataatttaca accgccccaa
     1621 aaggaagttg ttgaagggct tgccacactt gttgttggaa tggtgtacca atgacgtgtg
     1681 cgacaggtgt cttgaatgtg tgacaatgcc catgaaaata agcttccaac tctaaagcaa
     1741 tttggttcac aattgggtgg tatgaaattt gaatgagtct tgcttgcttt tgaaaatttt
     1801 tcaatgcagt atgataatct tttgagtctg taaatgataa acctaacaag gcgtcatcat
     1861 tcacaacagc agtcattaac ccaagcggtg tatcaatatg ttgaaagtaa aatgacatcc
     1921 ggttcgacct cctttaattt gattgaaatg gcacgaaacc attactactg atcgcaatgt
     1981 tgtcatgtgg aaaagcgtct tgcattaatt ttaacacatg cagataggtg tctggatgat
     2041 accaagactg taaatcgaaa tcttcgtata aagactgaat gccgagtgat tgtgtgcgac
     2101 gaccgtttga cccatcaccc ataaagtaat cgtcaatcgt cacacggtcg acatgtttag
     2161 ctaaacgttc gccaaactga ttcgtacaag gtaggacagg tgcaacgaca atttgtgttg
     2221 gaatatgtgc tgcacgaagt ttgtccacag ttttgagacg agattgaata ctcggtgctt
     2281 tgggtgtgaa atgccgaatg atgtcttcac ggtcgctttc tacggtcata ctcacgatga
     2341 aattaccagg ataagattga aggatgtcga tatctcgttg tataagcggg ctacgtgttt
     2401 gaatgaacaa aaaatcaggc ggacagtcat gcatttcaga taataaatag cgcgtcattt
     2461 catatttttt ctcaagtggc tgatacgggt cggtagaaga ggacatgaat actgtgaaag
     2521 gtcctttagc tttatttttc tggagctctt ttcgaaattt cagctgttca tctgttttag
     2581 cagtgaccca atcgccccaa gttttacctg aaaagagcga aatcggtgag cgacgtacgt
     2641 aacagtaagt gcacgcaaat tgacagccca tgtatggatt caaagtatgt gtataatctt
     2701 ttaaatagcc actcgctttc gttaaaaatt gttgtggctg acgtgattgg atgtccatca
     2761 aatcctccta aaataaaaac agacaggtga cttgcgacga cctgtctgtg ctggatttat
     2821 gcttgtaatg tttcaatcgc tgtagcaata gatttaaata cgtgtggtaa atcttctttt
     2881 tcaatacaac taaaggcgat gcgaatatca gtttcgttaa gcgcaacgat accgattgaa
     2941 tgcttctcaa tcaaatgtac acgtaattct tcagcattca cacctttcac tttcaacgcc
     3001 atgaagtaac cagagttaaa gtcatacggt tgccataatg attggtatgc ttcatcataa
     3061 acaagttctt ttgtcacttc ataacgtgct tgtaaaattt gaatgttatg ttgcacttca
     3121 tcattgaaag atgccctttg tttcagcgcg tgttggacgg ctgcttgaga aggtgtagca
     3181 ccacttgagt tgttgctacg aatgagccct ttcattttag cttctaacac ggttttagtc
     3241 gtgtcatttg tagtaccaaa agttaagaaa ccgacgcgga agccccatgc gaaaaactct
     3301 tttgtcgcac catctaaacg aataggtaac acacgttcat tgtttaatcg tgtcagtgca
     3361 gtgaaaatcg attgtgtata aacatcttca taaaataagc cataatatgc atcatcaaca
     3421 acagcaacga cattgacacc gcgttttgcc aaacggtcaa ttgcttgaac aattgcttca
     3481 acttcatccg ttgtaggtgt gtaaccagtt gggttgtttg gatagtttaa cagcatgatg
     3541 actttatctt cttcaaattg atctaacgtt ttcacgaggt gctcgattgt gaaatgacct
     3601 tgtgcatcaa aaatagggta agtttgcatt gttgcttggt gacgaatacc atacacgagg
     3661 ttatagttgc cccaattatg ttgcggtaat aatacagtgt cacctgggtt tacaaataaa
     3721 tcaccaatta atgataaacc gtgtgttaaa gcgttcgtca cgataggtaa actcatcgct
     3781 tcttgcgtta agtcaggatt ctcttttaac attttttgtt gccatagttc acgtaattca
     3841 gccaagcctt gtggtggggc ataagcaaaa acttcatctg tcgttaaatg atcaaacatg
     3901 ccatataacg tttcagtgta cattttacct tcggctgttg tagccatacc gattgtcgcg
     3961 ttatattttg tcgctttggc ttcagcagat tgtgtcaaaa taccttttgg ataatacata
     4021 tttgttccaa ggtcggaaag catatctagg acgactggat tttcttcact taactgttcg
     4081 tttaattgta gcgctaaagg gttcataaga ttcgacctct ttctattttt catcatatac
     4141 atctatcata cagtgaataa caataaattt aaagaataga ctgatagaaa attcaactta
     4201 aaagcgcaaa ataagaacac atgttcggta ttttatgtta aaataaatgt agccaccact
     4261 ccctacattt ttggcgcttt ataggaaaac agtttctaaa agtaggaggt gtttaatcat
     4321 gtcgtggaca gaattttgga tgttattaat taatggtggc attctcatta tttttaggtg
     4381 ttgggtcgaa tcgaagtgga gaaggcgaga tcaggaaaaa caacaaaaag atgattcaac
     4441 acatacatga actaaggccc agcaaacaaa agccccaaac ttgcggcaac aagtttgggg
     4501 tgtttaatca tgtgtggata cactattatt ttatcacctt cacaatttgg aggcaaacga
     4561 tttatttacg aaagatatgt aatgtttagg tggtgagttt aagaatgggt ttggagggac
     4621 tcgacgttat cagttcatga agtgctgttg acaaatggct cagctttttc taatgtttga
     4681 atcagcaatt aattaaaagg agaatccaat gaaacattta acaaaagttt ttgtcattat
     4741 tgcgttatta atttttgtta ttggcatcat cttacagttt ttaagggaag aaacgtcagc
     4801 catcaaactg tttatcgcga ccattttatt tatgatttgt gcctttatta gccgtcataa
     4861 tgatcggaaa aagcaacgtt aagcaattaa aagcattgaa tttgatgaaa tgtaatgtaa
     4921 aaaagtttaa aattttaaat ataacaagtt gatagttgtt ttctatcaga tgattttgtt
     4981 atgttaacga gtgttgaaca tttctattca cgacaaatgc ttttgggaga aatgttgaag
     5041 tgttgacata tagaagtatt cgcactcagt acataggtgt gtcgtcattt ataacacgag
     5101 ttcagtctat ccttaatgat aaaggggagt tttcaaaaag tgcagtcgaa aatatacata
     5161 tttcacattt tttgactgac caatactatt taacaggatg cgctattaag acgatagtga
     5221 gttgctcaag gttcaatgag ccatacttta tgatcagtaa tcgcaattat atgagtgaag
     5281 tcatttcaaa tgtatcatct aatcaataaa caggaggatt cgtggatgga attgaaacaa
     5341 atcaccaaac aatatggcaa caatactgtc attgatcgcg ttgattttgc atttaatgat
     5401 agtaaaattg ttggattaat tggtaaaaat ggtgttggta aaacaacatt aatgaaaatt
     5461 atgaatggca atattattaa ttaccaagga gacgttcaag tagtcaatga cgataaaatc
     5521 ggttatttaa ttgaacatcc gaaactttac gataataaat caggtctata caatttaaaa
     5581 ctttttgcgc aagttttagg tactggtttt gataaagcgt atacgaatca tattattaaa
     5641 gcgtttggta tggagtccta tattaagaaa aaagtgaaaa aatattcaat ggggatgaaa
     5701 caaaaactgg ctatcgctgt ttctctcatg aataaaccga aatttttaat tttagatgag
     5761 ccaacaaatg gcatggatcc agatggttca atcgacgtct taaaaaccat tgaacaactt
     5821 gtacaacaat tagacatgaa aattctcatt tcgagtcata aattagaaga tattgaactc
     5881 atttgtgacc gtgctgtatt tttgagagac ggtcattttg ttcaagacgt gaatatggct
     5941 gaaggtcaat ccacagctca aacgattatt caagtggacc ctgatgactt tgaacaagca
     6001 ttatattact taactgatca ttttaaagtc gtacaatcac agaaagaatc aggagaaatt
     6061 attttaaatg tgcaaagcga ttatcgcaat ttccttaaag gattagcaca aaaaggtatt
     6121 ttcccacaat atattgaaac acgtaaagta tcattacgcg acacttattt caatattaat
     6181 caacgaggtg gtcaatcatg aatatattgc aattgttcaa attcgacatc gtgagtattt
     6241 taaaaagtcc gcttacttat ttagcgattc ttctcggtat tgcaccattg ctcattacag
     6301 tcattatttt agtcacgaac gataatccgg taaatgcgaa tacaatgttt agtgtcggaa
     6361 aatggttctt ttcgcttatt ggtctactat tcgttatcaa aacgattaca cgtgataccg
     6421 ctcaaggaac gatccaactc tttttaaatc aaacacagag tcgtattggt tattttattg
     6481 cgaaaacatt atctatcatt ttcatcagta ttttcactac agctgttgtc gttttagtca
     6541 catatttaat tcaatggtca actgatggta aagatttaga taatgatcag tcgtggaaat
     6601 tactcgtatt ttatttaatt ttattctttg tctatgggct attactgttt ttgattaacc
     6661 ttattgttca aaaaccagca ttagtgtata cactcggtat tttattgtta cttttattac
     6721 cagtcgtgaa accgtttatt ccgcttattc ctgaaattgg cgataatatt caagattcat
     6781 taaagtatat tccgtttagt tacttaagcg ataagacttt aggaaatggt gtgacgttta
     6841 cgaactggca gtgggtcatt aatgttggat ccatcgtcgt cttgtggttg gcgaacttag
     6901 cgttaatcgc gaaaaaagat atttaaaact tacgtcgact tttatatagt agcttaatga
     6961 ttgctacagt gagactcgca ttccaagtgg ctgactagag cataggtgta gggaagtcat
     7021 gcaactacta cgttaagcgg cgaccactct caaaattaaa aaaatcattg tgtttccaac
     7081 tttatgcatc aggagtcttg tactccgacg agccattaaa aacatcactc tacttcaaaa
     7141 gtggggtgat tttttatgct tttaaaatgt aacatcatgt atattgccac gccttacttt
     7201 tgagattatg tcttttttaa ttgctagggt ttgtactcaa atcattcgat gaacaatctt
     7261 gtaaaaataa aaatcgatgc gtaagcgttt acatttatat ctttttactt tagaatactt
     7321 gtatacaagt taggagtgat gagatggaaa ttcctaaaca atggttgacg tatttatcaa
     7381 aaggggaggc catagctgct actttacgct taagtattat gagtggggaa cgtgctactc
     7441 ataaattact gactgaaaac caagtcgcaa atgagtttca agtgagccgt tcacctgtgc
     7501 gagatgcgtt taaaatttta gcgcaagaac gtttaattcg tttggaacgc atgggagctg
     7561 aaattattcc atttacagat aagcagcgtc aagaattgac tgatattcgc ctgatgattg
     7621 aatcgtttgc ttttacgaaa gttattcaac ggtctgattg gatggaaatt gtgaaatcaa
     7681 tgcaacaagc attagctatg atgcaagtaa atatccaata taaagatgct gcgagttttg
     7741 ccgaaaatga tttgaaattc catgagttaa tggttttagc gtgtgatcat cattatttaa
     7801 cgcatttatg gcaacaaatt atgccgacaa tgctatgtct gaactatatg agtatgaaaa
     7861 agcgaatgga cgagaatttt gaggattttg aacgagtcat tcaaaaccat gaactgtttg
     7921 ttacagcgat tgcacaaaaa gatagaaaaa tgatgtatga agcattcgaa gccaatttta
     7981 atgatttaaa caacgatatc ggcgcatttt gggcacagta atattaaaag aaaggtgtat
     8041 cactatggag aaatatatga ttggagtaga tattggaacg accagcacga aagctgtgtt
     8101 gtttaacact gacgggggag ttcaacagaa agcacagata gaatatccat tgcacacacc
     8161 acgtgtggat gtttcagaac aagatccaga tattatcgtc aatgcagtga cagaaaccat
     8221 tgcagaagtg gtacggaaag gtgacgtaca acatgaagct ctgcaattta tttcgttcag
     8281 tgcgcaaatg catagtttat tactcattga tgaattcgaa catccaatga ctaaaagtat
     8341 gacgtgggcg gataatcgtg cacgttttgc tgctgaagat ttactgaatc atcatgacgg
     8401 tcatggcatt tatcgacgta ctggaacacc gatacatgcg atgtcaccgt taagtaaatt
     8461 atggtggttg aaacaagatg aaaatgaact ttttgaaacg gcaacacgct atgtcgatat
     8521 taaatcatat gttctgtacc aattgacagg tgaatgggtg atggatgctt cgattgcctc
     8581 agctacagga ttgtatcatt tacaaaataa aacgtgggat gaaaaagtgt tgtcgttact
     8641 tgatattccg ccttcgaaat taccaacact cgtatcgacg acgcatcaac tccgtttgaa
     8701 agatgactat atagctgaaa aacttggatt gcgtcgcgat ttgcctatca ttgcgggtgc
     8761 gagtgatggt gtattgtcga acttaggtgt gaacagtttt gaaccaggag atgtggctat
     8821 tacgattgga acatcaggcg cgattcgtac agttgtcgat catcctgtca ttgatgaaaa
     8881 ggggcgtatc ttttgttatg tgctcgatga tgaacattat gtcattggtg ggccggtcaa
     8941 taatgggggt gtcgtattgc gttggctccg tgatgaattg ttagcgagcg aaatcgagac
     9001 ggcaaaacga ttagggattg aaacttatga tgtgatgtct cgcattgcac aaaatgttca
     9061 accaggcgca caaggtttat tgttccatcc ttatttaaca ggtgaacgtg cgcctttatg
     9121 gacatctgat gcacgcggtt catttatcgg attgacttta tcgcatcaga aagaacatat
     9181 gattcgtgca gtgatggaag gcgtattatt caatttatat actgtctttt tagcattaat
     9241 agaagtcatt ggcacgtcac cacaatcgat taaagcaaca ggtggcttct caaaaagtca
     9301 tttatggcgt caaatgatgg ctgatatttt taatacaaat gttgaaatac caaaaagtta
     9361 tgaaagttca tgtctcggtg cctgtgtttt aggattaaaa gcactcggac aaattgataa
     9421 ctatgacatt gttaaatctt gggtaggtgc gacacatcaa catcatccag aagcagtgca
     9481 tgtcaatgtg tatcaaaaat tggcttctat ctttattcaa attagtagag atttaagtcc
     9541 gtcatatcaa acattggcac aatttcaacg tgatttagaa aataa
//
LOCUS       DANHOL010000096         9577 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.097, whole genome shotgun sequence.
ACCESSION   DANHOL010000096 DANHOL010000000
VERSION     DANHOL010000096.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 9577)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9577)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9577
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.097"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            30..2144
                     /gene="ftsH"
                     /locus_tag="PTC08_001671"
     CDS             30..2144
                     /gene="ftsH"
                     /locus_tag="PTC08_001671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent zinc metalloprotease FtsH"
                     /protein_id="HDK5683176.1"
                     /translation="MQKAFRNVLFIAIVGVVIFGLFSWINGNGNVPKELTYTQFIQKL
                     DNGELKSLEIQPENNVYKVSGKLKNNDDYASTILFNNDQELNKVTETAKDQKGLDFTV
                     KEEEGQSVFVSIISTLIPVLVIALLFIFFLSQAQGGGGGGRMMNFGKSKAKMYDSQKG
                     RVRFTDVAGADEEKQELIEIVDFLKDNKKFKQMGSRIPKGVLLVGPPGTGKTLLARAV
                     AGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCIIFIDEIDAVGRQRGAG
                     VGGGHDEREQTLNQLLVEMDGFGENEGIIMIAATNRPDILDPALLRPGRFDRQIQVGR
                     PDVTGREAILHVHAKNKPLDETVDLKAIAQRTPGFSGADLENLLNEASLIAARSGKKK
                     IDMRDIEEATDRVIAGPAKKSRVISEKERNIVAHHEAGHTIIGMVLDEAEVVHKVTIV
                     PRGQAGGYAMMLPKQDRFLMTEPELLDKICGLLGGRVAEDIIFNEVSTGASNDFERAT
                     QIAREMVTKYGMSKKLGTVQFSHGGGQVFLGKDMSGEPEYSGQIAFEIDKEVQRIIKE
                     QYERCKQILLDHESQLKLIAKTLLTEETLVAEQIQSLFHEGHLPEVNYDDAKVVNHSE
                     NKAFDEGKYGKSYDDIRREQQELTGRANRDQSERRNEDETTNETEPKDSEDRQQNDNG
                     DTTGYEQEPNIDRPGNDQPPRQ"
     gene            2599..3483
                     /gene="hslO"
                     /locus_tag="PTC08_001672"
     CDS             2599..3483
                     /gene="hslO"
                     /locus_tag="PTC08_001672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp33 family molecular chaperone HslO"
                     /protein_id="HDK5683177.1"
                     /translation="MTHDYLVKALAFNGEIRAYSVNATETIQEAQKRHYTWPTASAAL
                     GRTMTASLMMGAMLKGDQKLTVTVDGDGPIGKIIADADAKGKVRGYVTNPQTHFPLNE
                     QGKLDVRRAVGTTGAINVVKDVGMRDYYTGSSPIISGELGEDFTYYFANSEQVPSSVG
                     VGVLVNPDNSIKAAGGFILQVMPGAKDETIDRLEAAISTMKPVSTLIDEGLTPEEMLE
                     TILGKDNVTILESMPTEFECNCSHDKFLNAIKGLGQAEIEDMIAKDHGAEAECHFCRS
                     RYSFSEDELKALLAEMPS"
     gene            4007..4936
                     /gene="cysK"
                     /locus_tag="PTC08_001673"
     CDS             4007..4936
                     /gene="cysK"
                     /locus_tag="PTC08_001673"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase A"
                     /protein_id="HDK5683178.1"
                     /translation="MVRKPVDNITDIIGQTPVVKLRHQAGEDAADIYVKLEYQNPGGS
                     VKDRIALAMIEQAEKEGKIKPGDTIVEPTSGNTGIGLAFVCAAKGYKAVFTMPETMSM
                     ERRNLLKAYGAELVLTPGAEAMKGAIKKAKELKETHGYFEPQQFENPANPKVHELTTG
                     PELVEQFEGRTIDAFLAGVGTGGTLSGAGKVLKEKYPDIQIVAIEPEDSPVLSGGEPG
                     PHKLQGLGAGFIPGTLNTEIYDEIIKVGNEVAMETSRRVAKEEGILGGISSGAAIYAA
                     IQKAKELGKGKTVVTVLPSNGERYLSTPLYNFE"
     gene            5158..5961
                     /gene="folP"
                     /locus_tag="PTC08_001674"
     CDS             5158..5961
                     /gene="folP"
                     /locus_tag="PTC08_001674"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HDK5683179.1"
                     /translation="MPQTQIMGILNVTPDSFSDGGRFNEVDRAVEHGTKMVEQGAHII
                     DVGGVSTRPGHEEVTEEVTVEEELARVIPVVKALQHLDVTISVDTFRSEVAEAALKAG
                     ATMINDQWAGLYDSRMFQVAAKYDAEVILMHNGDGKRNVPVMDEMLVMLLKQANKAVL
                     AGIDRERIWLDPGIGFAKTREEDQEVMSRLDELVATGYKVLLATSRKRFIKFLLGGDN
                     QVDDRDEATAATTAYGIMKGVHGVRVHNVLMNARLAKTMDALKGYEDGR"
     gene            5951..6322
                     /gene="folB"
                     /locus_tag="PTC08_001675"
     CDS             5951..6322
                     /gene="folB"
                     /locus_tag="PTC08_001675"
                     /EC_number="4.1.2.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin aldolase"
                     /protein_id="HDK5683180.1"
                     /translation="MEDKIFLKGLEFYAYHGALPAENEIGQIFTVDVEMKVDLSVAGT
                     SDRVEDTVHYGEVYEDIKAIMHGSAVQLIEHLAERIALRINSHYNRVMETKVRITKKN
                     PPIPGYYQGVGVEIVRANHHD"
     gene            6315..6800
                     /gene="folK"
                     /locus_tag="PTC08_001676"
     CDS             6315..6800
                     /gene="folK"
                     /locus_tag="PTC08_001676"
                     /EC_number="2.7.6.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-4-hydroxy-6-
                     hydroxymethyldihydropteridine diphosphokinase"
                     /protein_id="HDK5683181.1"
                     /translation="MIDVYLGLGSNMGDREAQLKAAIDLLDAHDKINVVAISPIYETK
                     PVGYTEQPDFLNLCLHIQTQLSAQDLLKVALETEAELHRVRKVRWGPRTMDIDILLYG
                     DEIIEEDDLTVPHPRMTERAFVMVPLNDIAANVIEPHSGQKIQQIVPHDDTVVKYKAI
                     L"
     gene            6845..7837
                     /gene="dusB"
                     /locus_tag="PTC08_001677"
     CDS             6845..7837
                     /gene="dusB"
                     /locus_tag="PTC08_001677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine synthase DusB"
                     /protein_id="HDK5683182.1"
                     /translation="MWKIGDVEIENRVVLAPMAGVCNSAFRLTVKEFGAGLVCAEMVS
                     DKAILFNNPKTMKMLYIDENERPLSLQIFGGEKETLVEAAEYVDKNTTADIIDINMGC
                     PVSKIIKCEAGARWLLDPNKIYEMVSAVTERVSKPVTCKMRIGWDEDHIFAVENAKAA
                     ERAGAAAISLHGRTRVQMYEGKADWDIIRQVKEAVNIPVIGNGDVTSPELAEKMLKET
                     GVDAVMIGREALGNPWMIYRTVHYLETGELIDEPQIDEKIEIALLHLNRLVDLKGEKV
                     GVMEMRKHASWYLKGVRGNGKARKALNQAETLAEMTEILTEFRDEQMEKQKIEA"
     gene            7860..9347
                     /gene="lysS"
                     /locus_tag="PTC08_001678"
     CDS             7860..9347
                     /gene="lysS"
                     /locus_tag="PTC08_001678"
                     /EC_number="6.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HDK5683183.1"
                     /translation="MTEELNDQMQVRRQKLQELRDLGIDPFGEKFERTGTAETLKAQW
                     DQYAKEELAEKETESHTVIAGRIMTKRGKGKAGFAHIQDLSGQIQIYVRKDQVGDAQF
                     GVWNTADLGDIVGVEGIMFKTNTGELSVKAKSFKLLSKALRPLPDKHHGLQDIEQRYR
                     QRYLDLITNEESTQTFINRSRILQEMRNYLNEKGFLEVETPMMHQIAGGAAAKPFVTH
                     HNALDATLYMRIAIELHLKRLIVGGLEKVYEIGRVFRNEGVSTRHNPEFTMIELYEAY
                     ADYKDIMSLTEELVAHIARRVLGTTSVQYGDETINLEPQWRRLHMVDAVKEATGVDFY
                     EVKSDKEAHELAKAHGIEVDDNMKYGHILNEFFEQKVEETLIQPTFIYGHPIEISPLA
                     KKNPEDPRFTDRFELFIVGREHANAFTELNDPIDQRQRFEAQLVEKEQGNDEAHEMDE
                     DFIEALEYGMPPTGGLGIGIDRLVMLLTNSPSIRDVLLFPYMRQK"
BASE COUNT         3166 a         1603 c         2212 g         2596 t
ORIGIN      
        1 tttatatttg aagtaggagg aaacgacgca tgcagaaagc ttttcgtaat gtgctgttta
       61 tagccattgt cggcgttgtt atctttgggc tattttcatg gattaacggc aatggaaatg
      121 tacctaaaga gttaacttac acgcaattta ttcaaaagtt ggataatgga gaactgaaat
      181 ctttagaaat tcaaccagaa aataatgttt ataaagtgag cggtaagtta aaaaataatg
      241 acgattatgc ctcaacaatt ttgtttaata atgatcaaga attgaataaa gttactgaaa
      301 cagccaaaga ccaaaaagga ttagatttta ctgttaaaga agaagaagga cagagtgtat
      361 ttgtaagtat tatttctaca ttaattcctg ttttagtgat tgctctactc tttattttct
      421 tccttagcca agcacaaggc ggcggtggtg gcggtcgtat gatgaacttt ggtaagtcca
      481 aagcgaaaat gtacgatagt caaaaaggcc gtgtacgctt cacagatgtt gcgggagcag
      541 atgaagagaa acaagaactc attgaaattg ttgacttttt gaaagataac aagaaattca
      601 aacaaatggg ttcacgtatc ccgaaaggtg tcttattagt agggccacca ggtacaggta
      661 aaacattgct tgcacgtgca gtagcgggtg aagcaggtgt gccgttcttc tcaattagtg
      721 gttcggactt tgttgagatg tttgtcggtg tcggtgcgag ccgtgtccgt gatttattcg
      781 aaaatgcgaa gaaaaatgcg ccgtgtatca tttttataga tgagatcgat gcagtgggtc
      841 gtcaacgtgg agcaggtgtt ggcggtgggc atgatgaacg tgaacaaaca ttaaaccaac
      901 ttcttgtaga gatggatggt tttggtgaaa atgaaggtat catcatgatt gcggcgacaa
      961 accgtcctga catcttagac cctgcgttat tacgtccagg ccgttttgac cgtcaaattc
     1021 aagttggacg tccagatgtg acaggccgtg aagccatttt acatgttcat gctaaaaaca
     1081 agcctttaga cgaaacagta gaccttaaag cgattgcaca acgtacaccg ggcttctctg
     1141 gtgcggattt agaaaactta ctcaacgaag cgtctttaat tgcggcgcgt agtggtaaga
     1201 aaaaaatcga tatgcgtgat attgaagaag cgacagaccg cgttattgca ggtccagcta
     1261 aaaaatcgcg tgtcatttct gaaaaagaac gtaatatcgt tgcccatcat gaagcaggac
     1321 atactatcat cggtatggtg cttgacgaag ctgaagtggt gcacaaagta actatcgtac
     1381 cacgtggtca agcgggtggt tacgcaatga tgttacctaa acaagaccgt ttcttaatga
     1441 ctgaaccaga attactcgat aagatttgtg gtttactcgg tggacgtgtc gctgaagata
     1501 ttatctttaa cgaagtctca acaggtgcgt caaatgactt tgaacgtgct acacaaatcg
     1561 cacgtgaaat ggtgacgaaa tacggtatga gtaaaaaact aggtactgta caattctcac
     1621 atggcggcgg acaagtcttc ttaggtaaag acatgtcggg tgaacctgaa tattcaggtc
     1681 aaatcgcctt tgaaattgac aaagaagtac aacgcatcat taaagaacaa tatgaacgtt
     1741 gtaaacaaat cttgttagac cacgaatccc aattaaaatt aatcgctaaa acgttattaa
     1801 ctgaagaaac attggttgca gaacaaattc aatcattatt ccatgaaggg catttaccag
     1861 aagtgaatta tgatgatgca aaagtcgtta accattctga aaataaagcg tttgacgaag
     1921 ggaaatatgg taagtcttat gatgacattc gtcgagaaca acaagaattg acaggacgcg
     1981 caaaccgtga tcaatcagaa cgacgcaatg aagacgaaac aaccaatgag actgagccaa
     2041 aagacagtga agacagacaa caaaatgaca atggcgatac aacgggttat gaacaagagc
     2101 caaacattga tcgtccaggt aatgatcaac cgccacgtca ataagcgata agcatcaggg
     2161 cttttcttga aagcagaaca cttttaagaa aagccctttt tataattggt gaacactgat
     2221 ggtgaagtgg tgcccctttt caaaagcatg atggtataag tggggataaa atttgataaa
     2281 agcacttgca aaaaagtaag aaagcgaagt catgagggca atcaaagcca aaaatcatta
     2341 tgggcaagtt aaataaaata ccgcatcaat cgcatcccaa attttatggc ctctccactt
     2401 tcgctaattt gaatgtaaaa gttatattta cctctataca tgataaagtt gtaggaagca
     2461 ttttagttga gtcgtacgag acttccgcgt atgataatgc aaagtagtga ccctccaatt
     2521 aaaatagcga cggacataga tgatcattaa tcaataacac agaataaact gcacaaattt
     2581 aaggagtgat atagcaaaat gacacatgac tatttagtaa aagcgttggc ctttaacgga
     2641 gaaattcgtg catatagtgt aaacgcaacg gaaacgattc aagaagcaca aaagcgtcat
     2701 tatacgtggc ccactgcatc tgcagcttta ggtcgaacaa tgacagcaag tttaatgatg
     2761 ggtgctatgt taaaaggtga ccaaaaatta acagtaacgg tagacggcga tggcccaatc
     2821 ggtaaaatta ttgctgatgc agatgcgaaa gggaaagtga gaggttatgt gacgaatcct
     2881 caaacgcact ttccgctcaa tgaacaaggc aaattagatg tgcgtcgtgc agtcggaaca
     2941 acgggcgcaa tcaatgtcgt aaaagatgtg ggcatgcgtg attattatac agggagtagc
     3001 cctatcattt caggtgaact cggtgaagac ttcacatatt attttgcgaa cagtgaacaa
     3061 gtcccttcat cagtgggggt tggtgtactt gttaacccag ataactctat caaagcagca
     3121 ggaggattta tccttcaagt catgccgggt gccaaagatg aaaccatcga tcgtttagaa
     3181 gcagcgatta gcacgatgaa acctgtatcg acattaattg atgaaggttt aacaccagaa
     3241 gaaatgttag aaacgatttt aggtaaagac aatgtgacaa ttttagaaag catgccgact
     3301 gaattcgaat gtaactgtag ccacgataaa tttttaaatg cgatcaaagg tttaggtcaa
     3361 gccgaaattg aagatatgat tgcaaaagat cacggtgcag aagcggaatg tcatttctgt
     3421 cgctcacgtt attcattttc cgaagatgaa ttgaaggcgt tacttgctga aatgccatct
     3481 taaacacatg taacaagctg gaataaaaat tttgatgata tttaatttaa tattttcctt
     3541 aacttgccct catgaacacg cattctttaa ggttgccggt atggattcgc ttttccagag
     3601 acttgtctta actcgccaac acttcatgat cttgttatat tagaagtagc attggcggtt
     3661 tttcaatccc cctacatttt ggcaatttta cattgataac tttagcacat gagggcaagt
     3721 tttgagtttg atgaacaatt tcaaaatcgt tatcgtctca catgaattga tggctaatta
     3781 agtcactttt aaacgacttc atttcttctc ggtcttcaat gatatagaat ggagtatgcg
     3841 agccttttaa acgatatagg cgttaacatc ggtcgatatc ttgataaaaa acagttgcga
     3901 cttagaatgt gcttttgctc gcgtacattt agtggtacac tatagatatc cgatataata
     3961 gctatgtttt aacgagaaaa ttaattgaaa agtgaggttg ttgaggatgg tcagaaaacc
     4021 agtggataat attacagaca ttattggtca aacacctgtt gttaagttac gtcatcaagc
     4081 aggtgaagat gctgcagaca tttatgtgaa attagaatat cagaatccag gcggctctgt
     4141 gaaagaccgt attgccctag cgatgattga acaagcagaa aaagaaggca aaattaagcc
     4201 aggcgataca attgtcgaac ctacttcagg aaatacaggt atcggtttag catttgtatg
     4261 tgcggcaaaa ggttataaag ctgttttcac aatgcctgaa acaatgagta tggaacgtcg
     4321 taacttatta aaagcttacg gtgcagaact cgtattgaca ccgggtgcag aagcgatgaa
     4381 aggtgcaatt aaaaaagcga aagaacttaa agagacacat ggctattttg aaccacaaca
     4441 attcgaaaac ccagctaacc ctaaagtgca tgaattaaca acaggtccag aacttgtaga
     4501 acaatttgaa ggccgtacca tcgacgcctt tttagcaggt gtaggtacgg gtggtacttt
     4561 gtcaggtgct ggtaaagtgt taaaagaaaa atatccagac attcaaatcg ttgccatcga
     4621 acctgaagac tcaccagtat taagtggtgg cgaaccagga cctcataaat tacaaggttt
     4681 aggtgcgggc tttataccag gtacgttaaa cacagaaatt tatgatgaaa ttattaaagt
     4741 cggcaatgaa gtagcgatgg aaacatctcg tcgtgttgct aaagaagaag gtatcttagg
     4801 cggtatttct tcaggtgcgg caatttatgc ggcgattcaa aaagcgaaag aactaggtaa
     4861 aggtaagaca gttgtaacgg tattgccaag taatggtgag cgttaccttt ctacaccact
     4921 ttataatttt gaataagaga caacagtagg gctgtgcaca tacagtcctg cttttttatt
     4981 gcattttagt gatatggcta tagaaaatga tgtgtctcac ttagacatca agtatgctta
     5041 tcattccgct ttgaagacga tggctgacat tgtatgaaag cttcagaaat ttgttataat
     5101 atacctattc taaggtggat gtgaatggtt gaatgaggcg gaaaggaaga ttgtaacatg
     5161 ccacaaacac aaattatggg tattttaaat gtcacaccgg attcgttttc agatggtggg
     5221 cgctttaatg aagttgatcg cgcggttgaa catgggacta agatggttga acaaggcgca
     5281 catatcattg atgtaggagg cgtatccaca cgtccaggtc acgaggaagt cacagaggaa
     5341 gtcacagtgg aggaagaact tgcacgtgtc atcccggtcg ttaaagcttt acaacatttg
     5401 gacgtcacta tttcagtcga tacatttcga agcgaagttg cagaagctgc acttaaagcg
     5461 ggtgctacaa tgattaatga tcagtgggca ggactttatg attcacgcat gtttcaagtg
     5521 gctgcgaaat acgacgcaga agtcatttta atgcataatg gtgatggcaa gcggaacgta
     5581 ccggtgatgg acgaaatgct tgtcatgtta ttaaagcaag cgaataaagc ggtgctcgcc
     5641 gggattgatc gtgaacgtat ttggcttgat ccgggtattg gatttgcgaa aacgcgtgaa
     5701 gaagaccaag aagtgatgtc acggttagat gaacttgttg caacaggtta taaagttttg
     5761 ttagcgacga gtcgaaaacg ttttattaaa tttttactcg gtggcgacaa tcaagttgat
     5821 gaccgcgatg aagcgacggc agccacaaca gcttacggca ttatgaaagg tgtacatggt
     5881 gttcgtgtac ataatgtttt aatgaatgca cgattggcca aaacaatgga tgcgttgaaa
     5941 ggatatgaag atggaagata aaatattttt aaaaggactt gaattttatg cgtatcatgg
     6001 cgcgctccct gcagaaaatg aaatcggtca aatttttacc gttgatgttg aaatgaaagt
     6061 ggatttaagt gtagcaggta cgtctgatcg cgtggaagat actgtacatt acggtgaagt
     6121 atatgaagat atcaaagcca ttatgcatgg ttctgctgtg caattaattg aacatcttgc
     6181 ggaacgtatt gcattacgta taaattcaca ctataatcgt gtaatggaaa cgaaagttag
     6241 aatcactaaa aaaaatccac ctatacctgg ttattatcaa ggggtcggtg tagaaattgt
     6301 gagggcgaat caccatgatt gatgtgtatt taggtttagg cagtaacatg ggtgaccgag
     6361 aagcacagtt aaaagcagcg attgatttat tagatgctca tgacaagatt aatgttgttg
     6421 cgatttcacc tatttatgaa acgaagccgg tcggatatac agaacaacct gattttttga
     6481 atttatgctt acacattcaa acacaacttt ctgcacaaga cttgttaaag gtcgctttag
     6541 aaactgaggc agagttacat cgtgtacgta aagtgcgatg gggcccacgt acaatggata
     6601 ttgacatttt attgtacggc gatgaaatca ttgaagagga tgatttaacg gtgccgcacc
     6661 cgcgtatgac tgaacgtgct tttgtgatgg taccattaaa tgatattgct gccaatgtta
     6721 tcgaaccgca ttcgggccaa aaaattcaac agatcgtacc tcatgatgat acagtagtaa
     6781 aatataaagc aatattgtga tggattttgg tgattgactt tgaatatatt ggaggaaatt
     6841 tgaaatgtgg aaaattggcg acgttgaaat tgaaaacaga gtcgtgcttg cgcctatggc
     6901 aggtgtgtgt aactcagcat ttcgactcac tgtaaaagag ttcggtgccg ggctagtgtg
     6961 cgcagaaatg gtgagcgata aagcgatttt gtttaacaat ccaaaaacga tgaaaatgtt
     7021 atacatcgat gaaaatgaac gtccattatc gttacaaatt tttggtggtg aaaaagaaac
     7081 attagtcgaa gctgccgaat atgtagataa aaatacaaca gctgacatta ttgatattaa
     7141 tatgggctgt ccagtatcaa aaatcattaa atgtgaagcg ggtgcacgtt ggttgttaga
     7201 tccgaacaaa atttatgaaa tggtgtcggc ggtaacagaa cgtgtgagca agcctgtgac
     7261 atgtaaaatg cgtatcggct gggatgagga ccatatcttc gccgttgaaa atgcaaaagc
     7321 tgctgaacgt gctggtgctg cggcgatttc gctacatggt cgcacacgtg ttcaaatgta
     7381 cgaaggtaag gcagattggg atattattcg tcaagtgaaa gaagcagtta acattcctgt
     7441 catcggtaat ggtgacgtta cgagtccaga acttgctgaa aagatgctta aagagacagg
     7501 tgtggatgca gtcatgattg gacgtgaagc attaggcaat ccatggatga tttatcgtac
     7561 ggtgcattat ttagaaacag gcgagttaat tgatgagcct caaatcgacg aaaaaattga
     7621 gattgcttta ttacacttga atcgtctcgt agatttaaaa ggtgaaaaag tgggcgttat
     7681 ggaaatgcgc aaacacgcgt catggtacct taaaggtgtc agaggcaatg gtaaagcgcg
     7741 taaagcatta aaccaggcag aaaccttagc cgaaatgact gagattttaa cagaattccg
     7801 tgatgaacaa atggaaaaac aaaaaataga ggcataagaa gcgaaaagga gaggtaagca
     7861 tgacagaaga attgaatgac caaatgcagg tccgtcgaca aaaattacaa gaattaagag
     7921 acttagggat tgatccattc ggtgagaagt ttgagcgtac tggaactgcg gaaacgttaa
     7981 aagctcaatg ggatcaatac gcaaaagaag aacttgctga aaaggaaacg gaaagtcata
     8041 cggtaattgc aggtcgtatt atgacaaaac gtggtaaagg taaagcagga tttgcgcaca
     8101 ttcaagattt atcgggtcaa attcaaattt atgtacgtaa agaccaagtg ggtgacgcac
     8161 aatttggtgt ttggaatact gcagacttag gtgatattgt cggcgttgaa ggtattatgt
     8221 ttaaaacaaa tactggagaa ttatcagtaa aagcgaagtc attcaaactt ttatctaaag
     8281 cgttacgtcc attaccggac aaacatcacg gtttacaaga tattgaacaa cgctaccgtc
     8341 aacgttatct tgacttaatt accaacgaag aaagcacgca aacatttatt aatcgtagcc
     8401 gtattcttca agaaatgcgt aattacctta atgaaaaagg gtttttagaa gtggaaacac
     8461 caatgatgca tcaaatcgca gggggtgctg cagcgaagcc attcgtgaca caccacaacg
     8521 cattggatgc aacactttac atgcgtattg ccatcgaact acaccttaaa cgtttaatcg
     8581 taggtggttt ggagaaagta tatgaaatcg gacgtgtatt ccgtaacgaa ggtgtttcta
     8641 cacgtcataa cccagaattt acgatgattg aattgtatga agcgtatgca gattacaaag
     8701 atattatgtc attaactgaa gaattagttg cacacatcgc tcgtcgcgta ttaggtacaa
     8761 cttcagttca gtacggtgat gaaacaatta atttagaacc acaatggcgt agattacaca
     8821 tggtcgatgc cgttaaagaa gcgacaggtg tagactttta tgaagtgaaa tcagacaaag
     8881 aagcacacga attagcgaaa gcacatggta ttgaagtaga tgataatatg aagtatggtc
     8941 acattctaaa tgaatttttc gaacaaaaag tagaagaaac tttaattcaa ccgacattca
     9001 tttatggtca tccaattgaa atctctcctt tagctaagaa gaaccctgaa gatccacgct
     9061 tcactgatcg ctttgagttg tttattgtag gtcgcgaaca tgcgaatgcg ttcacagaat
     9121 taaatgaccc aatcgatcaa cgtcaacgct ttgaagcaca attagtagaa aaagagcaag
     9181 gtaacgacga agcacatgaa atggatgagg atttcattga ggcattagaa tacggtatgc
     9241 cgccaacagg tggattaggt atcggtattg accgcctcgt gatgttatta acgaattctc
     9301 catctattcg tgacgtgtta ttattcccat atatgcgcca aaaataagat gtattattaa
     9361 tcgcttgtac attgtctatt cagtgtacag gcgtttttta gctttagtaa aggagaaaag
     9421 gatgaacacg agggacactt catattgcga tgtgtagagg agagaatact atgatgcatg
     9481 gtgaatggat atggcgagac taggttggtt tcacatgtgg tgggcacaga aatggtcatg
     9541 caaatcggtt tgaatttatt ttaaaaaaaa ggtgtta
//
LOCUS       DANHOL010000097         9492 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.098, whole genome shotgun sequence.
ACCESSION   DANHOL010000097 DANHOL010000000
VERSION     DANHOL010000097.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 9492)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9492)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9492
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.098"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            <1..243
                     /locus_tag="PTC08_001679"
     CDS             <1..243
                     /locus_tag="PTC08_001679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683184.1"
                     /translation="RMMIDRRTIELENKYIDLMNEYHLSSAKVIEGGDINSIKSDLNE
                     IEKEYAQLENYFLKLREDKGLMKKECDFVQSLMYAY"
     gene            256..957
                     /locus_tag="PTC08_001680"
     CDS             256..957
                     /locus_tag="PTC08_001680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016425508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter"
                     /protein_id="HDK5683185.1"
                     /translation="MTQKYISTELLIIFTALMIIANLYYIFFEKIGFLFVLLLGSILM
                     YVGYIYFHKVRGLLFFWIGALMILFTLLSNKYTLVILFLFMIIVAVRYVIYKRRPLEI
                     LSTEDAAQNPSFIKQKWFGEQKTPVYVYKWEDLQIQHGIGDVVVDMTKAANLKMQNHV
                     VIRHIVGKVQVVVPLNYNVNLNVAAFYGNVTLDQQRFKVENNNILMQSQHKPENYTVN
                     IFVSTFIGDVEVVYR"
     gene            954..1997
                     /locus_tag="PTC08_001681"
     CDS             954..1997
                     /locus_tag="PTC08_001681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HDK5683186.1"
                     /translation="MNHYVRAIGSMLILVYSMLTAFFFIDKVFTNIIFFQGMFYTQIL
                     GIPVFIFLNLVVIFLCIIVGSVLAYKINQQNDWLKQQIVRAFEGETVGINDQQLELYN
                     ETIELYQALVPLNQELHKMRIKTQNLTNETYNLNDLKVKKIIEDERQRLARELHDSVS
                     QQLFAASMMLSAIKETDLAPPLDQQIPTLEKMVQDSQLEMRALLLHLRPIGLKDKSLG
                     EGIKSLVTDLQRKVPIKVVQEIDEFEVPKGIEDHLFRITQEAISNTLRHAEGTQVTVE
                     LLNRNDYLLLRIQDDGIGFNVDEKLEQSYGLKNMRERAIEIGATFHIVSLPDAGTRIE
                     VKAPLEKEEQHDN"
     gene            1987..2616
                     /locus_tag="PTC08_001682"
     CDS             1987..2616
                     /locus_tag="PTC08_001682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HDK5683187.1"
                     /translation="MTIKVLFVDDHEMVRIGISSYLSTQPDIEVVGEGASGKEAIAKA
                     HELKPDLILMDLVMTDMDGVEATMQIKKDLPHIKVVMLTSYIEDKEVYRALDAGVDSY
                     ILKTTSANDIAEAVRKTSRGESVFEAEVLVKMRNRMKQRAELYELLTEREMEILLLIS
                     KGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHGLIE"
     gene            complement(3183..3764)
                     /locus_tag="PTC08_001683"
     CDS             complement(3183..3764)
                     /locus_tag="PTC08_001683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbonic anhydrase"
                     /protein_id="HDK5683188.1"
                     /translation="MTLLEHILEYNEEFVANKAYEAYSTSKTPSKKAVLLTCMDTRLQ
                     DLSTKALGFNNGDLKVVKNAGATISHPFGSTMRSLLVGIYALGAEEIIIMGHKDCGMG
                     NINVEEVMTTMQQRGVDQQVIDILNYSGIDVSNFLKGFDDVYDNVKHNIEMIYEHPLF
                     DNKVPVHGLVIEPHTGELDLVHNGYERAESYQN"
     gene            complement(3797..5134)
                     /locus_tag="PTC08_001684"
     CDS             complement(3797..5134)
                     /locus_tag="PTC08_001684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihY/virulence factor BrkB family protein"
                     /protein_id="HDK5683189.1"
                     /translation="MSKNEQQSEGFIDKVKKTISNDDHAQNQKEETPSPDRKGDATGE
                     TEEKHKFVKPQPFQSKEAPKENQTFFVSRINKPAKYTDRPNFFNYLIYRIGKDDASGL
                     AAQLAYYFMLSLFPMLIFILSLVPLFNIDSDTITAQISKNAPAETSSIITGIIDDVMG
                     NASGGLLSIGLILALWTASNGMTAMMNAFNVAYDVEDSRNFVVSKLLAIFFTLLIGIT
                     LPLTLVLFTFGEQIGNLLFGPLGLDEQVRWVFSLLRTALPVLAVLIVFTIIYTLAPNV
                     KIRFKSVIPGALFSTIVWILGSLAFGFYVSNFANYSKTYGSIGGVIVLMLWLYITGFI
                     LIIGAEINAIVHQRKVIKGKTPEEETYDELEAEDEEDLAEAHNNYGEKDDKQVNDDQE
                     TNDTRHKESVQNTASESTHDTTTSTDRAPQYKEPEIVERTNIGRSKHIKTTED"
     gene            complement(5350..5637)
                     /locus_tag="PTC08_001685"
     CDS             complement(5350..5637)
                     /locus_tag="PTC08_001685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YtxH domain-containing protein"
                     /protein_id="HDK5683190.1"
                     /translation="MQNKLLPGILIGATVGGAIALIDKNTRRSVKTSVNNIKTGQRSS
                     QPSKFTQVKDEVLYWKNTFDEIRRNNPELERSLRNAKDTFMERKNNKQIGL"
     gene            complement(5645..6103)
                     /locus_tag="PTC08_001686"
     CDS             complement(5645..6103)
                     /locus_tag="PTC08_001686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low molecular weight phosphotyrosine protein
                     phosphatase"
                     /protein_id="HDK5683191.1"
                     /translation="MTTVAFVCLGNICRSPMAEAIMRQRLKDRNIDDIEVYSRGTGRW
                     NLGEPPHQGTQKILKAHDIPFDGMISELFTETDDFDYIIAMDQSNVDNIKDINPHLKG
                     KVHKLLEFSDMEETDVPDPYYTNNFEGVYEMIQSSTDHLIDYILKDTRKG"
     gene            6237..6440
                     /locus_tag="PTC08_001687"
     CDS             6237..6440
                     /locus_tag="PTC08_001687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002482850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1128 domain-containing protein"
                     /protein_id="HDK5683192.1"
                     /translation="MSKSIEEMIVEIRNRLNLVNPGLIDPENYSENDREDIEDIHAFV
                     TSKRDFTPREMTGITEALGDIRK"
     gene            6462..7694
                     /locus_tag="PTC08_001688"
     CDS             6462..7694
                     /locus_tag="PTC08_001688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase"
                     /protein_id="HDK5683193.1"
                     /translation="MTTEKRLQQYAKLLVRVGMNVQQGQPVYIRTSVETVDFTRLIVK
                     EAYAAGASDVRVKYEDPQVKRLTYENEPTSFFEQEVKGYDVEERMDYVNRGACMLALL
                     SEDPDLLNGIDSDKLKAAQRQYAKAFKPYMIAAQKNSFPWLVACYPSQAWANRVYPEL
                     SDEEAMARFLEDILSIVRVDGNDPIENWERHAQNLKVRAAMLNDKAYTALHFVSEGTD
                     LHIGLPKGHIWEEPMSYTEQGQGFIANIPTEEVFTAPDCNNVNGYVTNKLPLSYNGTI
                     IDGFKLTFKDGAVVDFEAKQGEAVLADLLDTDEGARRLGEVALVPDDSPISNKNTIFF
                     NTLFDENASCHIALGAAYAFNLQGGTEMTAEELKAHGLNDSLTHVDFMIGSSDLNIYG
                     VLEDGTKEQIFKDGNWSN"
     gene            7713..8234
                     /locus_tag="PTC08_001689"
     CDS             7713..8234
                     /locus_tag="PTC08_001689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HDK5683194.1"
                     /translation="MAKIDKKAMQDSKVYKSRQVFPQDTNHLGTLFGGTMMANIDEIA
                     AICAMKHANQTVVTASTDSVDFLKPIRNGDILTYIAMVSYSGSSSMEVCVQILIEDIP
                     NNKQELAALSFLTFVALDDDGKPTKVPAVYPETEAEKWFHETAEARVARRKARRQESK
                     QTLQFISELEFKQ"
     gene            complement(8299..9438)
                     /gene="yfkAB"
                     /locus_tag="PTC08_001690"
     CDS             complement(8299..9438)
                     /gene="yfkAB"
                     /locus_tag="PTC08_001690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM/CxCxxxxC motif protein YfkAB"
                     /protein_id="HDK5683195.1"
                     /translation="MLTTQKDPISIFNDPWEPYTDIEQYGQLTLSNVEFTTTNLCNMR
                     CSHCAVGYTLQTKDPDILPMSLILQRLDEIPTLRTISITGGEPMFSKKSIREVVKPLL
                     KYAYQRGIYVQLNSNLTLPLDRYLDIAEYIDVLHISHNWGTIDTFTEVGFGAMEKQPP
                     LKAKLKLYEQMISNARTLSEQGMFVSAETMLNKSTYPHLTSIHREVVNDMKCQRHEIH
                     PMYPADFASQLEVLDLKTMKEAISHLLDVRDSNTWMLFGTLPIFPCLQDEADAKLRQK
                     LKQAPNVTMRNDPDGRSRLNVNVFTGDVIVTDFGDETGTISNIRHDQLTDVFQRWLDS
                     PLAQAINCHCPKFECLGPNILVKNMYYPNVDFKVQEARMHTLFNQ"
BASE COUNT         3014 a         1675 c         1876 g         2927 t
ORIGIN      
        1 cggatgatga ttgacagaag aacgattgaa ttagaaaata aatatatcga cttaatgaat
       61 gaatatcatc tctcaagtgc gaaagtgatt gagggtggag acatcaattc gattaaaagt
      121 gatttgaatg aaattgaaaa agagtatgcg caattggaaa attacttcct caagttaaga
      181 gaagataaag gtttgatgaa aaaggaatgt gattttgttc aatctttaat gtatgcatac
      241 tagaaaggtg gaaatatgac acaaaaatat atttcgaccg aattactcat tatttttact
      301 gcgctaatga ttattgcgaa cctttactat atcttttttg agaaaatcgg gttcctcttc
      361 gttttattat taggcagtat tttaatgtat gtcggttata tttactttca taaagtgcgt
      421 ggattactat tcttttggat tggcgcatta atgattttat ttacattatt atctaataag
      481 tacacactcg tcatattatt cttgtttatg attatcgttg cggtgcgcta tgtgatctac
      541 aaaagacgac cacttgaaat attatcaaca gaagatgcgg cgcaaaaccc ttcattcatc
      601 aaacaaaaat ggtttggcga acaaaaaaca ccagtctatg tttataaatg ggaagatttg
      661 caaattcaac atgggattgg tgacgtagtt gtggatatga cgaaagcggc gaatttaaaa
      721 atgcaaaacc atgtcgtcat tcgtcacatc gtaggtaaag tgcaagtcgt ggtacccctt
      781 aattataatg tgaatttgaa tgtggctgca ttttacggca atgtcacttt agatcaacag
      841 cgttttaaag ttgaaaataa taacatttta atgcaatcac aacataaacc agaaaactat
      901 accgtcaata tcttcgtctc aacatttata ggtgatgttg aggtggttta tcgatgaatc
      961 actacgtccg agcgataggt tcgatgctca ttctcgtata tagtatgctc accgcgtttt
     1021 tctttattga caaagtgttc accaatatta ttttctttca aggcatgttt tatacacaaa
     1081 ttttaggtat tcctgttttt atctttttaa atttagtcgt cattttttta tgtattattg
     1141 tgggcagtgt gttagcttat aaaatcaatc aacaaaatga ttggctcaag caacaaatcg
     1201 ttcgtgcctt tgaaggtgaa acagtgggca tcaatgatca acaactcgag ctgtataatg
     1261 aaacgattga attatatcaa gcactcgtcc cattaaatca agaattgcat aaaatgcgaa
     1321 ttaaaacaca aaatttaacg aatgaaacgt ataatttaaa tgatttgaag gtgaaaaaga
     1381 ttatagaaga tgaacgacag cgtttagcac gagaattgca tgatagtgtg tcgcaacaac
     1441 ttttcgcggc aagtatgatg ttgtctgcaa tcaaagaaac agatttagca ccaccgttag
     1501 accaacaaat tccaacgtta gaaaaaatgg tgcaagactc acaacttgaa atgcgcgctc
     1561 tgttacttca cttgagacct ataggattga aggacaaatc gttaggtgag ggaattaaat
     1621 cgcttgtgac ggatctacaa cgtaaagtac ccattaaagt cgtgcaagaa attgatgagt
     1681 ttgaagtacc taaaggcatt gaggatcacc tttttagaat tacccaagaa gcgatttcca
     1741 atacgttacg acatgctgag gggacgcaag taacggtaga attacttaac cgcaatgatt
     1801 atttattgtt gcgtatacaa gatgacggca ttggatttaa tgtcgatgaa aagttagaac
     1861 aaagttatgg attaaaaaat atgcgtgaac gtgcaataga gattggtgcc acatttcata
     1921 tcgtctcatt acctgatgcg gggacgagaa tagaagtgaa agcaccactt gaaaaggagg
     1981 aacagcatga caattaaagt attatttgtt gatgatcatg aaatggtacg tattgggatt
     2041 tcaagttatt tatcaacaca acccgatatc gaagtagtgg gagaaggtgc ctcaggtaaa
     2101 gaagcaatcg caaaagccca cgaattgaaa ccagatttaa ttttaatgga tttagtgatg
     2161 acggatatgg acggcgttga agcgacaatg caaattaaga aagatttgcc acatattaaa
     2221 gtcgtgatgc tgacgagtta tattgaagat aaagaagtgt atcgagcgtt agatgccggt
     2281 gtcgatagtt acattttaaa aacgacgagt gcgaatgata ttgcggaagc tgtacgtaaa
     2341 acgagtcgtg gtgagtctgt gtttgaagcg gaagtattag tgaaaatgcg caatcgaatg
     2401 aagcagcgtg cggagttata tgaattgttg actgagcgcg agatggaaat tttgttgttg
     2461 atttcaaaag gctattcgaa ccaagagatt gcgagtgcat cacatattac gattaagaca
     2521 gtgaagacgc atgtgagtaa tattttaagt aagcttgagg tgcaggatcg tacgcaagcg
     2581 gttatttatg ctttccaaca cggcttgatt gagtagaacg tacgagtatt cataaaaagg
     2641 gaaagaggta ggacataaaa attttcgatg ctgttgatgt aatatggttg ttgtacttgc
     2701 ccttcctatg acttgaggct ttagattgcc ctcatggctt cgcattccga gggactggtc
     2761 cttcaattga ctactgtttg attaaactgt tacatttgtt gagacaatag tggattatcg
     2821 gagcagtaca gaaatctcat gtgtcacaaa gatttcgtct gactgccctt gcaaacattg
     2881 agaagtcaga cagctactgc tgacagtaac cactattaaa gagaagcggt aactgtcagc
     2941 agtatgtatg cattccatca gccgtctcag ccttttaggc aatcgtatat caaatacagc
     3001 gcaaacagag tgcaaattta tgaaatcaag aaaacgatag caacattttc tatatcccat
     3061 ttacccctat ttttcgactg ctcgattacc attaatcgat ttcagtaatg gtgatgaaac
     3121 agtcaaaaaa atgaggagga gtaggaaata aatttttatc tcctactcct cctcaagttc
     3181 gtttaatttt gataggattc agcgcgctca taaccgttat gcacaaggtc taattcaccg
     3241 gtatgcggct caatgacaag accatgaacc ggcactttat tatcaaatag cggatgttca
     3301 taaatcattt caatgttgtg ttttacatta tcataaacat cgtcaaagcc ttttaaaaag
     3361 ttggaaacat cgatgccaga gtagttgaga atatcgatca cttgctggtc gacaccacgt
     3421 tgctgcatcg ttgtcatcac ttcttcgaca ttaatatttc ccataccaca gtctttatgt
     3481 cccataataa taatttcttc agcccctaat gcatagatgc ctacgagtaa acttcgcatt
     3541 gttgaaccga atggatggct aatcgtagcc cctgcatttt taactacctt taaatcccca
     3601 ttattgaaac cgagtgcttt ggttgataaa tcttgcaagc gtgtatccat acaagtgagt
     3661 aataccgctt tttttgaagg tgttttactt gttgaataag cttcgtacgc tttattcgct
     3721 acaaattctt cgttgtattc taaaatgtgt tctagtaatg tcattagact tcctcccaag
     3781 attggtacag tgttgtttaa tcttctgttg ttttaatatg ctttgaacga cctatattcg
     3841 tgcgttcgac tatttctggt tctttgtatt gtggtgcacg gtctgttgac gtggtcgtgt
     3901 catgtgttga ttcagacgct gtgttctgta cgctctcttt atggcgcgtg tcgtttgttt
     3961 cttgatcatc attcacttgt ttatcgtctt tttcgccata attattatgt gcttcagcta
     4021 agtcttcttc gtcttctgct tcaagttcat catacgtttc ttcttcaggt gttttgcctt
     4081 taatgacttt acgttgatga acaatcgcat tgatttcagc accaataatt aaaataaagc
     4141 cagtgatgta caaccataac attaaaacga tcacgcctcc gatactacca tacgttttag
     4201 agtagttggc aaagtttgaa acgtaaaaac caaatgccaa tgaacctaaa atccatacaa
     4261 tcgttgagaa tagggcacca ggaataaccg atttaaatcg aattttcaca tttggtgcta
     4321 acgtatatat aattgtaaaa acaatcagta cagctaatac aggaagggca gtacgtaaca
     4381 gactaaatac ccaacgaact tgttcgtcta ggcctagtgg tccgaataat aagttgccga
     4441 tttgctcacc aaacgtaaat aagacgagtg tgagtggtaa tgtaatccca attaataatg
     4501 taaagaaaat cgctaacaac ttcgatacga caaagttacg gctatcttca acatcataag
     4561 cgacgttaaa agcattcatc atcgcagtca ttccgttcga tgctgtccac aatgccaaga
     4621 tcaacccgat tgagagtaga ccaccacttg cattacccat gacatcatca ataataccgg
     4681 taatgatgga ggacgtttct gcaggggcat tctttgaaat ttgtgctgta atcgtatcgc
     4741 tatcaatgtt aaagagtggg acgagcgata agatgaaaat caacattgga aaaagcgaca
     4801 acataaaata gtaagcaagt tgtgcggcta atccagatgc atcgtctttt ccaatacgat
     4861 aaattaaata gttaaaaaag ttcggacggt ctgtatattt ggctggtttg ttaattcttg
     4921 aaacgaaaaa tgtttgattt tctttcggtg cttctttaga ttgaaacggt tgaggcttta
     4981 cgaatttatg cttctcttcc gtttcacctg tcgcatctcc ttttcgatca ggagaaggcg
     5041 tttcttcttt ttgattttgc gcatgatcgt cattagaaat tgtctttttg actttatcaa
     5101 taaagccttc tgactgttgt tcgtttttag acatagctaa actccttatc ttaaaaatta
     5161 aaaggggcaa tctccaaggc atcataaaat gtgcattgaa attgcccttg ggtatgacag
     5221 acgacatcaa acatatgaac gacatatagc gtcaatgcat tgaaatgtga acgtatcaat
     5281 gtgagtcata tgagctgttc atacttaaga tgtcattgtc atccaacgat agttctaaaa
     5341 atggttagat taaagaccaa tttgtttgtt gtttttgcgt tccataaacg tatcttttgc
     5401 gttgcgtaaa gaacgttcta gttctggatt gttacgacga atttcgtcaa acgtattttt
     5461 ccagtataat acttcatctt tcacttgagt gaacttagaa ggttggcttg aacgttgccc
     5521 tgttttaatg ttattcactg atgttttcac agaacggcgt gtgtttttgt cgattaacgc
     5581 aatcgcacca ccgactgtag ccccaattaa gattccaggt aataatttgt tttgcataat
     5641 gatgttaccc ctttcgtgtg tctttaagaa tatagtctat taaatgatcc gtagatgact
     5701 gaatcatttc ataaacacct tcaaaattat ttgtgtaata tgggtctgga acgtctgttt
     5761 cctccatatc actgaattca agcaatttgt gcaccttacc tttaagatga ggattaatgt
     5821 ccttaatatt atctacatta ctttgatcca tggcaataat gtaatcaaaa tcatccgttt
     5881 ctgtaaataa ttcgctaatc atcccatcga aaggaatgtc atgtgctttt aaaatttttt
     5941 gtgtaccttg atgagggggt tcacctaaat tccagcgacc tgtccctctc gagtatactt
     6001 caatgtcgtc aatattgcga tcctttagac gttggcgcat aattgcctca gccataggag
     6061 atcgacaaat attacctaaa catacaaaag caactgttgt catgcagata acctccatgt
     6121 tctaaatcta tatgcccatt ttagcctttt ttaaaacaat tcgaaagtga tagcgacaaa
     6181 aatttttcaa atattcatca ctttgataaa atattggaga cgaaaggatg agataaatgt
     6241 caaaatctat tgaagaaatg attgtagaaa tacgcaatcg tttaaattta gtaaaccccg
     6301 gattaattga tccagaaaac tatagtgaaa atgatcgtga agatatagaa gatatacatg
     6361 cgtttgtcac ttcgaaacgt gactttacac cacgtgaaat gacaggtatt actgaagcat
     6421 taggtgatat tcgcaagtaa ttcgaattgg gaggttttta tatgacaact gagaaacgat
     6481 tacaacaata tgctaaattg ctcgtacgtg tggggatgaa tgtgcaacaa ggtcaacctg
     6541 tgtacattcg cacatctgta gaaaccgtgg acttcacacg tttaattgta aaagaagctt
     6601 atgcagcagg ggcctcggat gtaagagtga aatatgagga tcctcaagtt aaacgtctga
     6661 cttacgaaaa tgagccgact tcattttttg aacaagaggt taaaggctat gacgtagaag
     6721 aacgcatgga ttacgtgaac cgtggtgcat gtatgctagc actcttatca gaagatccag
     6781 atttactgaa tggcatcgat tctgacaaat taaaggcggc acaacgtcaa tacgcaaaag
     6841 cttttaaacc atacatgatt gcagcacaaa aaaatagttt cccgtggctt gttgcatgtt
     6901 atccttccca agcatgggca aaccgtgtgt atcctgaatt aagtgatgaa gaagcgatgg
     6961 cgaggttttt agaagatatt ttgagtattg tacgcgtcga tggcaatgat ccaattgaaa
     7021 actgggaaag acatgcacaa aacttaaaag tgcgtgcagc aatgttgaac gacaaagctt
     7081 atacagcgct tcatttcgtt tcagaaggaa cagacttaca tattggctta ccgaaaggcc
     7141 atatttggga agaaccgatg agttatacag aacaaggtca aggttttatc gcaaacatcc
     7201 cgactgaaga ggtgttcact gcaccagatt gtaacaatgt gaatggttat gtcactaata
     7261 aattaccgct cagttataac ggcaccatta ttgatggttt caaattaacg tttaaagatg
     7321 gcgctgtcgt tgattttgaa gcgaaacaag gagaagcagt tttagcagac ttactagaca
     7381 cggacgaagg tgcgcgtcgt ttaggtgagg tcgcattagt gccagatgat tcaccgattt
     7441 caaataaaaa cacgattttc tttaatacat tgtttgatga aaatgcatca tgccatattg
     7501 cattaggtgc tgcatatgcg tttaatttgc aaggtgggac tgaaatgacg gctgaagaac
     7561 tgaaagccca tggtttgaat gattcattaa cacatgtgga ctttatgatt ggtagtagtg
     7621 accttaatat ttacggtgta cttgaagatg gtacaaaaga acaaatattt aaagacggaa
     7681 attggagcaa ttaaacatat tgaggtgacg acatggcaaa aatagataaa aaagcgatgc
     7741 aagattcgaa agtttataaa tcgagacaag tatttccaca agacaccaat catctcggga
     7801 cgttgttcgg tggtacaatg atggcgaata ttgatgaaat tgcggcaatt tgtgcaatga
     7861 aacatgcgaa tcaaactgtc gtgacggcgt ctacagattc agtagacttt ttaaaaccga
     7921 ttcgtaacgg tgacatttta acgtatatcg cgatggtttc gtattcaggt agttcatcaa
     7981 tggaagtttg tgttcaaatt ttaattgaag atattccgaa caataagcag gagttagcag
     8041 cactcagctt tttaactttt gtcgcattag atgatgacgg caagccaaca aaagtgcctg
     8101 cagtatatcc tgaaacggaa gcagaaaaat ggtttcacga aacagctgaa gcccgtgtag
     8161 cacgtcgaaa agcaagaaga caagaaagta aacaaacatt gcaatttatt tcagaattag
     8221 aatttaagca ataaacaata gaaaggctgg gaaacgtcaa aaactgcttc ctagcctttt
     8281 ttagcacgca tctattcgtt attgattaaa aagtgtatgc atacgcgctt cttgtacctt
     8341 aaaatcaaca tttggataat acatattttt aacaagaata ttcggtccga gacattcaaa
     8401 ttttggacaa tgacaattaa ttgcctgagc taaaggactg tccaaccatc tttggaatac
     8461 atccgtcaat tgatcatgac gaatattaga aattgtacct gtttcatcac caaaatctgt
     8521 cacaataaca tctcccgtaa acacattcac atttaagcga ctgcggccat caggatcatt
     8581 acgcatcgtt acattcggtg cttgttttag cttttgacgt aatttcgcat ctgcttcatc
     8641 ttgcaaacaa gggaatatcg gcaaagttcc aaacaacatc cacgtatttg aatcacgcac
     8701 atctaataaa tgtgaaatgg cttctttcat cgttttcaaa tcgagcactt ccaattggct
     8761 cgcaaaatca gcagggtaca tcggatgaat ttcatgacgt tgacatttca tatcattcac
     8821 gacttcacga tgaatagacg tgagatgtgg ataggtactt ttgtttaaca tcgtttctgc
     8881 tgagacgaac attccttgct cacttaaagt acgtgcgttt gaaatcattt gttcatacaa
     8941 tttcaatttc gcttttaatg ggggctgctt ttccatcgca ccgaaaccga cttcagtaaa
     9001 agtatcaatc gtgccccaat tgtgtgaaat atggaggaca tcaatatatt ctgcaatgtc
     9061 caaataacgg tctaacggta aagttaaatt cgaattcaat tggacatata ttccacgttg
     9121 atatgcgtac tttaataatg gtttaactac ttcacgaatt gatttttttg aaaacatggg
     9181 ctcgccaccc gtaatagaaa tcgtacgtaa cgttggaatt tcatctaaac gttgtaaaat
     9241 taatgacatc ggtaatatat cggggtcttt cgtttgtaat gtatagccca cagcacaatg
     9301 actacaacgc atattacaca aattcgttgt cgtgaattcc acgttgctca gcgtcaattg
     9361 accgtattgt tctatatctg tataaggctc ccacgggtca ttaaatattg aaatagggtc
     9421 cttttgggtc gttaacattt ttaaaaactc ctcatcttaa aatacatgat cacttgatat
     9481 ttaccattga gg
//
LOCUS       DANHOL010000098         9454 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.099, whole genome shotgun sequence.
ACCESSION   DANHOL010000098 DANHOL010000000
VERSION     DANHOL010000098.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 9454)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9454)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9454
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.099"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            550..2400
                     /gene="nrdD"
                     /locus_tag="PTC08_001691"
     CDS             550..2400
                     /gene="nrdD"
                     /locus_tag="PTC08_001691"
                     /EC_number="1.17.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020361474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic ribonucleoside-triphosphate reductase"
                     /protein_id="HDK5683196.1"
                     /translation="MTQLEKQLTGLMTKDPTIVNENANKDSETFSTMRDLTAGVVSKS
                     YALQHLLPPHVAMAHQKGEIHFHDLDYHPFQPLTNCCLIDAKGMMAHGFQIGNAQVTS
                     PKSIQTAAAQLVQIIANVSSSQYGGCTIDRVDELLSHYAKFNEEKHREVAREFVKSDQ
                     IDDYVDKRVTQDIADAVESLEYEINTLYTSNGQTPFVTLGFGLGIDELSRKVQTAILK
                     TRIKGLGKDRITAIFPKLVFSIKKGTNFAPEDPNYDIKQLALQCAMKRMYPDILNYDK
                     TVELLGDFKAPMGCRSFLPAWQNAQGEFENNGRCNLGVVTLNIPRIAIESAGDMTRFW
                     DLFDERMQVLHDALVYRIERVKEAVPNNAPILYKRGAFKHRINEEDPVDTFFNQRRAT
                     ISMGYIGLYEAATVFFGPNWETNPEAKDFTLNILKQMKNYQLEWTDQYDVWFSIYSTP
                     SESLTDRFCRLDREAFGDIPDITDKGYYQNSFHYDVRKDVTPFEKLDFEKDYPYLASG
                     GYIHYCEYPKLDHNVKALETVWDYAYDRVSYLGTNIPIDHCYDCGFEGDFDTTETGYR
                     CPECGNQNPETVDVVKRTCGYLGNPVQRPTIEGRHKEMCARVKHLKVRQS"
     gene            2397..2936
                     /gene="nrdG"
                     /locus_tag="PTC08_001692"
     CDS             2397..2936
                     /gene="nrdG"
                     /locus_tag="PTC08_001692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic ribonucleoside-triphosphate reductase
                     activating protein"
                     /protein_id="HDK5683197.1"
                     /translation="MSVLDVSTGAGYIAKIEYQSFVDGEGVRCSVYVSGCPFQCQGCY
                     NKAAQHFRYGEAMTHTVMEEVLDACAPEYIAGLSILGGEPFCNLKVVAPLVQAFRARY
                     GREKSLWIWTGYLFEYLWRANDQRTEIIKQTDVIVDGMFMQKLYQPNLPYKGSLNQRV
                     IDVHQFIKTKMMSQSIYIE"
     regulatory      3135..3233
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00162"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="SAM riboswitch class I; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="S-adenosylmethionine"
                     /db_xref="RFAM:RF00162"
     gene            3297..4574
                     /locus_tag="PTC08_001693"
     CDS             3297..4574
                     /locus_tag="PTC08_001693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-acetylhomoserine
                     aminocarboxypropyltransferase/cysteine synthase"
                     /protein_id="HDK5683198.1"
                     /translation="MTSDFKFETLQLHSGQEVDESSHSRALPIYQTTSFTFDDTAHAA
                     NLFGLDELGNIYTRLMNPTTNVLETRVTELEGGVAGVAVASGMAAITYAIQAVAQKGD
                     HIVASSTLYGGTHTLFTHTLPKYGIDVTLVDTTEVSHIENALQDNTKALFVETIGNPE
                     GNVEDFDALVTITKAQGIPLIVDNTFATPYLSRPIEHGANIVVHSATKFIGGHGTSMG
                     GVIVDAGNFNWDNGKFPGLSEPDPSYHGLVFSEKFGEAALAFKIRTTILRDTGAAISP
                     FNAFLLTQGLETLSLRLERHVENAEKVAQYLEKHDKVAWVKYAGLPTSEYYALKEKYL
                     PKGASSIFTFGVKGGYEAGKKFIEGLELFSLLANVGDAKSLVIHPASTTHQQLTEAEQ
                     TAAGIAPETIRLSIGLEHIDDIIADLEKGFAKL"
     regulatory      4731..4831
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00162"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="SAM riboswitch class I; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="S-adenosylmethionine"
                     /db_xref="RFAM:RF00162"
     gene            4877..6256
                     /locus_tag="PTC08_001694"
     CDS             4877..6256
                     /locus_tag="PTC08_001694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HDK5683199.1"
                     /translation="MTRKQIHFNGFVQNSPAPHAAGLWKHPKDKGATHHNLKYWTNIA
                     QTLERGLFDGIFIADVLGTYSVYNQSHDAAVKHAVQLPAHDPIPLVSAIAAVTEHIGI
                     APTVSTTYAQPYKLARQLSTLDHLTNGRLGWNVVTSYLESEAVNLGLKELLPKALRYS
                     RADEFLQVSYQLWEDSWEDDAVVKTRETDTYADPSKVHVIHHKGTFFDIPGPHLVEPS
                     PQRTPVLFQAGASEKGKTFAAKHAEAVFTKHTSIESLRAYVTDIRTRAQQFGRNGEDI
                     LVFPMVLPIIGETEEEAYEKYEALQNEVSYEGSVALLSGHTGIDFSQYDPDEYIENIE
                     TEAMQGNLNLYTKDPHRKWTLREAVKNHGLGNGTVKFIGTPTQIADQLELWANEGGAD
                     GFNIAQAYSPGTFEEFVDFIIPELQKRGIYRTEYEGETLRENMFGKGHTKVKPTHPAR
                     NKKVNLVQI"
     gene            6267..7763
                     /locus_tag="PTC08_001695"
     CDS             6267..7763
                     /locus_tag="PTC08_001695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:pantothenate symporter"
                     /protein_id="HDK5683200.1"
                     /translation="MNDVKVYTWIGFIVFMALMITVGFVSSRKMKSISDFATGFGRIG
                     PRTLGLSFAATYLSAATFLGYPGWSYTWGLNNLWLFLAMFIGGPTGVLMVAKRVRSLN
                     TTQQSLSLPDWLGDFYDSSILRVGTAMILLFNIFYIASQLVAGALIFKYLLGMSYFSS
                     LIVITVIVVLYVYVGGALADIYTDTLQVIMMAVAGLTIFISGIVLFWKGSIHDTFSGI
                     VQNLNHQNHYLVQVFNPDSVHFHSFTMIIGAIIIQWAFASAPHLFNKILGLKSEKDLG
                     RMIRTYIFVMSICLLVLFGGIFSRVALGGQVESSDLALLQYIEWAFPAGIVALFGVVI
                     LAAAMSTTDGLFVSISTVFANDLFLKLIVKQKWVSLEEEKANRIAFRISRVSVPVVGL
                     LSFLLVLKPPLYMSDFMWIGISGIAAGTMGPILHAVYAKRKAPGRAAELSMVVGLVSY
                     LVIYFGGVIPSTMSAGAIATILGILTITVMSSVMHHRASQLSVDKGEA"
     gene            7879..8268
                     /locus_tag="PTC08_001696"
     CDS             7879..8268
                     /locus_tag="PTC08_001696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tautomerase family protein"
                     /protein_id="HDK5683201.1"
                     /translation="MPIIKIDLIKGKSKDYIKEVLDISYEVMLEAFHAPVGDRYQIVT
                     QHEAYEMQILDTGLGVERTTDVLVFTLITRPRTQEQKTIFYRKLVEMLHLKLGIRKED
                     VLITLVENTDENWSFFNGEAQFLNGDL"
     gene            8633..9325
                     /locus_tag="PTC08_001697"
     CDS             8633..9325
                     /locus_tag="PTC08_001697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016426012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 glutamine amidotransferase
                     domain-containing protein"
                     /protein_id="HDK5683202.1"
                     /translation="MKKIMIVNTSYDQFDGFDLPTGLWLSELVHFYDVFQNNPNYQLD
                     IYNINGGETPIDPVSMNKVTLDRLTKKYYEDETFMRKLHDSPSIDEADVTQYDVIYFT
                     GGHGVMYDFRGHDTIARAVNDIYDRGGLVSSVCHGASALLEIKRPNDHFLIEGQKLTG
                     FSNREESIARRKKQVPYQLETALKEKGALYQKSIIPLKSFVVEEEQLITGQNPASARD
                     VGEAIKLRLDVK"
BASE COUNT         2962 a         1631 c         1994 g         2867 t
ORIGIN      
        1 caatttttat aaagaaaggt tataataaag atataaaatt ttacaatagg tttacacctc
       61 acttcctcac tgtaccagag tgagaggggt ttttaatggt gtggctacaa tcgcctattt
      121 ttttaccgtt atttttattt catagccaat ggacaatcaa agcaatggta cacctactga
      181 gaacagtgag tgtatattgc tttaagattt cacacacgac cccttcactt ttttattcaa
      241 agtgaggggg tttttattat cgcttatttc tcatctgact cgtttctcac aatgcgataa
      301 tacatagaga tattcctcat atttaaaatc caatccatcc ccagcaaatc taacgacgat
      361 acacgtgatt taactaaaaa caatcgtacg atgaagttcc ttttgacacc ttctatctca
      421 caacgctttg ttcacataat gttaaaaaag aaatgacaaa tcggttaatg attcagatat
      481 catttgaaaa tcactatata tggtgtttat gattgtttat agacactaca tatagaaaag
      541 agtgatattt tgacacaact tgaaaaacaa ttaacaggtt taatgacaaa agatccaacg
      601 attgtaaatg aaaatgctaa taaggatagt gagacttttt caacaatgcg cgatttaacg
      661 gcaggtgtcg tttcaaaatc atacgcgtta caacatttat tacccccgca tgttgcaatg
      721 gcgcatcaaa aaggagaaat tcacttccat gatttagatt accatccatt ccaaccgcta
      781 acgaactgtt gtctcatcga tgcgaaagga atgatggcac atggttttca aattgggaac
      841 gcacaagtga catctccaaa gtcaattcaa actgccgcgg cccaacttgt tcaaattatt
      901 gcgaatgtgt ctagcagtca gtacggtggt tgcacgattg atcgtgttga tgaattattg
      961 agtcattatg caaagtttaa tgaagagaaa catcgtgagg ttgcacgtga gtttgttaag
     1021 agtgatcaaa ttgatgacta tgtagataaa cgggtaaccc aagatattgc agatgcggtc
     1081 gaaagtttag aatatgaaat taatacgctc tatacttcaa atggtcagac gccgttcgtt
     1141 acattagggt ttggattagg catagatgag cttagtcgca aagtacaaac agcaatttta
     1201 aagacacgga ttaaaggact cggtaaagac cgcattacag cgatatttcc aaaactcgtg
     1261 ttttccatta aaaaagggac taattttgca ccagaagacc cgaattatga catcaaacag
     1321 ttggcgttac aatgtgcgat gaagcggatg tatccagata ttttgaatta cgataaaact
     1381 gtagaacttt taggtgactt taaagcgcca atgggatgtc gctcattttt acctgcatgg
     1441 caaaatgcac aaggtgagtt tgaaaataat gggcgctgta atttaggcgt ggtcacgcta
     1501 aacattccac gtatagcgat tgagtcggct ggcgatatga cgcgtttttg ggatttgttt
     1561 gatgagcgga tgcaagtcct acacgatgcg ctcgtttatc gtatcgagcg tgtgaaagaa
     1621 gctgtaccga acaatgcacc aatattatac aaacgtggcg ctttcaaaca ccgaattaat
     1681 gaagaagatc cggtcgatac atttttcaac caacgacgcg caacgatttc gatgggctat
     1741 attggattat atgaagcagc gactgtgttc tttggtccaa attgggagac gaatcctgaa
     1801 gcgaaagatt ttacattaaa tattttaaaa caaatgaaaa attatcaact tgaatggaca
     1861 gatcaatatg atgtatggtt tagcatctat agtacgccaa gcgagtcgtt gacggaccgt
     1921 ttttgtcgct tggatcgaga agcatttggt gacataccag atattacaga taaaggttat
     1981 taccaaaatt cttttcacta cgatgtgcgt aaagatgtca caccctttga aaagttagat
     2041 tttgagaaag actaccctta tttagcatcg ggtggctata tccactactg tgaataccct
     2101 aaattagatc ataatgtgaa agcgctcgaa actgtatggg attatgcgta tgaccgagtg
     2161 agttatttag ggactaacat tccgattgac cattgctatg attgcggctt tgaaggtgat
     2221 tttgatacga ctgagacagg ttatcgttgt ccggaatgtg gcaatcaaaa tccagaaacg
     2281 gtggatgtgg tgaagcggac atgtggttat cttggtaatc ctgtgcaacg tccgacgatt
     2341 gaaggccgcc ataaagaaat gtgtgcacga gtcaaacatc tgaaggtacg tcaatcatga
     2401 gtgtattaga tgtaagcact ggtgccggtt atattgcgaa aatcgaatac caaagttttg
     2461 tcgatggtga aggtgtccga tgtagtgttt atgtctctgg ttgtccattt caatgtcaag
     2521 gttgctacaa taaagcagcc caacattttc gctatggtga agcaatgacg catacagtga
     2581 tggaagaagt gcttgatgcg tgtgcgccag aatatatagc tggattaagt attttaggag
     2641 gcgaaccttt ttgcaatttg aaagttgttg cgccacttgt tcaagctttt cgtgcacgat
     2701 acggtcgtga aaagtcatta tggatatgga caggatattt attcgaatat ttatggcgtg
     2761 ctaatgacca acggacagag atcataaaac aaactgatgt gattgtagac ggcatgttca
     2821 tgcaaaaatt atatcaacct aatttgccct ataaagggtc attaaaccaa cgtgtcattg
     2881 atgttcatca atttattaaa actaagatga tgagccagtc gatctacatt gaataaacag
     2941 atgtgtgctg attctcataa atataatttt tcgaattttt gcaacttgca agaaaattcg
     3001 gatttgtatt attgacatcg ttaaggatgt tagatagact tgttgtaaca ttaaaagcca
     3061 gtaaaacacc cgcacggtta ttccattggc cgttctattt ttgcgataca tcttgcattt
     3121 taacaactga atcatactta tcaagattgg tggagggaca ggccctttga aaccaggcaa
     3181 cctattcagt taggtgctaa ttcctgcagg tgattttacc tgagagataa gtcttctagt
     3241 aaaagtctat ctttatcagg taggctttta ttttttatga ttaggaggaa tgtcaaatga
     3301 caagtgattt taaatttgaa acgttgcaat tgcactcagg acaagaagtc gacgaaagta
     3361 gccattcacg tgctttacca atttatcaaa cgacatcttt tacttttgac gatacagcac
     3421 atgcggcgaa tttattcggt ttagatgaac ttggaaatat ttacacacgt ctgatgaatc
     3481 ctacaacgaa cgttcttgaa acacgggtaa ccgaacttga agggggtgtc gctggtgtag
     3541 cggttgcttc aggtatggca gcgattactt atgcgattca agctgtcgcg caaaagggtg
     3601 atcatatcgt agcaagttct acattatatg gcgggacaca tacactgttc acacatacgt
     3661 taccgaaata tgggattgat gtcacattag tcgatacgac agaagttagt catatagaaa
     3721 atgcgcttca agacaatacg aaggccttat ttgtagaaac gattggtaat ccagaaggta
     3781 atgttgagga ttttgatgca cttgtaacaa ttacaaaagc acaaggtatt ccacttattg
     3841 ttgataatac attcgcgacg ccttatcttt cacgtccgat tgaacatggc gcgaacattg
     3901 ttgttcactc tgcaaccaaa tttattggtg gacacggaac atcaatgggc ggggtcattg
     3961 ttgatgcagg taattttaat tgggataatg gcaagtttcc aggattaagt gaacccgatc
     4021 catcttatca tggtttagta ttcagtgaaa agtttggtga agccgcactt gcttttaaaa
     4081 ttcgaacaac aatattaaga gatacaggag cagcaatctc accatttaat gcatttttac
     4141 taacgcaagg attagagacg ctttcattac ggttagaacg tcatgtagaa aatgctgaaa
     4201 aagttgcaca atatcttgaa aagcatgaca aagtcgcatg ggttaaatat gctggcttgc
     4261 caacgagtga gtattatgcg ttaaaagaga agtatttacc aaaaggcgca agttccatct
     4321 ttacctttgg tgtcaaaggt ggatacgaag ctggcaaaaa atttattgaa ggcttagaat
     4381 tattttcttt gttagcgaat gtaggagacg ccaaatcgct tgtcatccac cccgcatcaa
     4441 cgacacatca acaattgacg gaggcagaac aaacagcagc aggtattgcc cctgaaacga
     4501 ttcgtctttc tataggcctt gagcatatcg atgatattat tgcggatttg gaaaaaggct
     4561 ttgctaaact ttaattttaa acgtcgcaca aaataaaggg aaattcatga tacggtagat
     4621 tgaaatgaat gcttttaaac aatgaaactt catatggaag atgcagttgt tctaccgcca
     4681 tgattttacc tttcattaat taaaaagtat ccccatgaat atacatcatc gtcttatcaa
     4741 gagagatgga gggactggcc caatgaaatc tcggcaacag gaattgattc actgtgccaa
     4801 ttccagtagc acaattgcta gaagataagt caactttcac tatgccttat cttcctattt
     4861 ttaggaggta atgttcatga cacgaaaaca aattcatttt aacggattcg tccaaaactc
     4921 tcccgctccc catgctgcag gtttatggaa acacccaaaa gataaaggag cgacacacca
     4981 caatttaaaa tattggacga atatagctca aactttagaa cgtggtttat ttgatggtat
     5041 ttttattgct gatgtattag gtacttatag tgtttataat cagtcccatg acgccgcagt
     5101 gaaacacgca gttcaactcc ccgcacacga ccctatccca ctcgtttctg ctattgcagc
     5161 agtaacagag catattggta ttgcacctac tgtttctact acttatgcac aaccgtataa
     5221 actagcccgt caattgtcta cactcgatca tctgacaaat ggtcgattag gttggaatgt
     5281 tgtgacgtct tatttagaaa gcgaggcagt gaacttaggc ttaaaagaac tcttgcctaa
     5341 agcgttacgt tacagccgtg ctgacgaatt cttgcaagtg agttatcagc tgtgggaaga
     5401 cagttgggag gacgatgcag ttgttaaaac gcgtgagaca gatacgtatg ctgatccttc
     5461 caaagttcat gtgattcacc ataaaggtac atttttcgat atacctggac cgcatcttgt
     5521 agagccttcc cctcaaagaa cacctgtttt atttcaagct ggtgcctccg aaaaaggtaa
     5581 aacgtttgct gcaaagcatg cagaggctgt gtttactaaa catacctcta ttgaatcgtt
     5641 acgagcatat gtcacagaca ttcgtacaag ggcacaacaa tttggccgta atggtgaaga
     5701 tatccttgtt tttccaatgg ttttgcctat tatcggtgaa actgaagaag aggcttatga
     5761 aaaatatgaa gcactgcaaa atgaagtcag ttatgaaggt tcagtcgcat tgttaagcgg
     5821 acatacgggt attgattttt ctcagtatga tccagatgaa tatatcgaaa atatagagac
     5881 agaagcgatg caaggcaatc ttaatttgta tacaaaagat ccacatcgaa aatggacatt
     5941 gcgagaagcg gtgaaaaatc acgggttagg taatggaacg gttaagttca ttggcacacc
     6001 aacacaaatt gctgatcaat tggaattgtg ggcgaatgaa ggcggtgcag acggttttaa
     6061 tattgcacaa gcctattctc caggtacgtt tgaagaattt gtggacttca tcatccctga
     6121 attacaaaaa agaggtatat atcgtacaga atatgaaggt gaaactttac gtgaaaacat
     6181 gtttggcaaa ggccatacga aagtgaaacc gacacatccc gcgcgaaata aaaaagtcaa
     6241 tttagtacaa atataggggg atgattatga atgacgttaa agtgtataca tggataggct
     6301 ttattgtttt tatggcgctc atgattacgg taggttttgt cagttctaga aagatgaaaa
     6361 gtatttcaga ttttgcgacg ggctttggaa ggattggacc acgtacgcta ggcttgtctt
     6421 ttgcagcgac gtatttaagt gctgcaacct ttctaggtta tccaggatgg tcgtatacgt
     6481 ggggcctcaa taatttatgg ttatttttag cgatgtttat cggtggacct acaggcgttt
     6541 taatggtcgc taaaagagtc agatcattaa acacaacaca acaatccctc tcactaccag
     6601 attggttggg cgatttttat gacagttcta ttttacgtgt tgggacggct atgatcttat
     6661 tatttaatat tttctatatc gcaagtcagc ttgtcgcagg cgctttgatt tttaaatatt
     6721 tactcggtat gagttacttt tcaagtttaa ttgttatcac agtcattgtt gtgctttatg
     6781 tatacgtagg tggtgcactt gcagatattt atacagatac cttacaagtt atcatgatgg
     6841 cagtagctgg tctcaccatt tttatctctg gcattgtgct attttggaag gggagcatcc
     6901 atgatacgtt ttcgggtatt gtacaaaact taaaccacca aaatcattac ttagtccaag
     6961 tttttaatcc tgactctgtt cactttcact cttttacaat gattatcggc gcgattatta
     7021 ttcaatgggc ttttgcatca gcgccccact tatttaataa aattttaggt ttaaaaagtg
     7081 aaaaagattt aggacgcatg attcgaactt atatttttgt aatgtcaatc tgtttacttg
     7141 ttctttttgg cggtattttc agtcgtgtgg cattaggtgg gcaagttgag agttcagatt
     7201 tagccctatt acaatatatt gagtgggcat tccctgctgg cattgttgct ttattcggtg
     7261 tcgttatatt ggcagcagcc atgtcaacta cagatggttt gtttgtttca atttctacag
     7321 tgtttgcgaa tgatttattt ttaaaactga ttgtcaaaca gaagtgggtg agtcttgaag
     7381 aagagaaagc caatcgaatt gcttttcgca ttagtcgtgt ttctgtgccg gttgtaggac
     7441 ttttatcgtt tttattagtt ttgaagccac cgctctatat gagtgacttc atgtggattg
     7501 ggatttcggg tattgcagcc ggtacaatgg gtcctatttt gcatgcggta tatgcgaaac
     7561 gaaaagcacc tggccgtgca gcagaactat cgatggttgt aggcttagtt tcctatctcg
     7621 ttatttattt tggtggtgtc atcccaagta caatgtctgc tggtgctatc gcaacaatat
     7681 taggtatatt gacaattaca gtgatgtcat ctgtcatgca ccatcgtgct agccaacttt
     7741 ctgtagataa gggggaagca taatgtttgt aaatgaaatg ttatccattt ggctatatgg
     7801 ttatataggg atatttgttg gactacttct cgcattaaaa tggggttact caaatcatga
     7861 cgaaaaggag aatgattaat gccaataatt aaaattgatt tgattaaagg aaaaagcaaa
     7921 gattatatta aggaggtttt ggatatttca tatgaagtga tgctagaagc ctttcatgca
     7981 ccagtagggg atcgctatca aattgtgaca caacacgaag cgtatgagat gcaaatctta
     8041 gatacaggtt taggcgtaga acggacgacg gatgtgttag tttttacact tatcacgcgc
     8101 ccaagaacgc aagaacaaaa aacgattttt tatcgcaagc tagtagaaat gttacatcta
     8161 aaattaggca ttcgaaaaga agacgtactc attactcttg tagaaaacac agatgagaat
     8221 tggagctttt tcaatgggga ggcgcaattc ttgaatggag acttataata tgacaagaaa
     8281 aatatcatct aaaatctctc tgctctcttg agttgtattg attggtaaaa gagttcagtg
     8341 gtaagcatat aaattcatca acactgcaaa ttatatggtt gagtaagaaa aattagtagt
     8401 ctacaactaa gcaaacgtta aatgccaaca aacgtattca gacaacacat agcgatgaac
     8461 tgtaaaatct gatgattaga aaagatttta ccgttctttt tattgaatct caggtgcttt
     8521 ttactctaat cactgccgtc atgaggtctg aaatcatagt cgttaagcat cgtattaagt
     8581 gcatagagaa aagttcgtta taatagtgaa aaagacgaaa gatgtgttca aaatgaaaaa
     8641 aataatgatt gtgaatacga gttatgatca atttgatggc tttgatttac caacaggttt
     8701 atggttaagc gaacttgtgc atttttatga tgtattccaa aataatccga attatcaatt
     8761 ggatatatac aatatcaacg gaggtgaaac gccaatagat cctgtcagta tgaataaagt
     8821 gacgttagat cgtttgacca aaaaatatta tgaagatgaa acttttatgc gaaaattaca
     8881 cgattcacca tccattgatg aagcagatgt gacacagtat gatgtgattt attttaccgg
     8941 tggccatggt gtgatgtatg acttccgagg acatgatacg attgcccgtg cggtaaacga
     9001 catttacgat cgtgggggtc tcgtttcttc agtttgtcat ggtgcgagtg ctttacttga
     9061 aattaagcgc ccaaacgatc attttcttat agaaggtcag aagttgacag gtttctcaaa
     9121 tcgagaagaa agtatagcgc gacgtaaaaa acaagtacca tatcagttag aaactgcatt
     9181 aaaagaaaaa ggcgcacttt accaaaaaag catcatacca ttaaaaagct ttgtcgttga
     9241 agaggaacaa ttaattacag gacaaaaccc agcgtcagca cgtgatgtag gtgaagcaat
     9301 taaactcaga ttagatgtga agtgaaaaca aaaaaattag aataggactt aaagagttga
     9361 ggtgaaataa aagagccact caaacggctt tttatttcac ttttttagta tcttgtcgta
     9421 aaaatatgac catcctaacc tgtgatgatt ttaa
//
LOCUS       DANHOL010000099         9408 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.100, whole genome shotgun sequence.
ACCESSION   DANHOL010000099 DANHOL010000000
VERSION     DANHOL010000099.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 9408)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9408)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9408
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.100"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(399..1097)
                     /gene="mecA"
                     /locus_tag="PTC08_001698"
     CDS             complement(399..1097)
                     /gene="mecA"
                     /locus_tag="PTC08_001698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adaptor protein MecA"
                     /protein_id="HDK5683203.1"
                     /translation="MRIERIDDMTVKLFITYTDIEARGFKREDLWTNRKRGEEFFWSV
                     MEEVNEEEDFVVEGPLWIQVHAFEKGVEVTISKSKNDDLMQMSEEDSAFDEFDSQLNE
                     LLSQSLKDEETDNHKDSEQSYRKRPSKNRTTTRTAIFKFEDLEDVIAYAHRNDQRLTE
                     FEDLLYMLDDTYYYVVHFDETVAETHIHDYYGQILEFTAPSDKTEFYLNDYGKIVMSH
                     NVVEQVKRYFPEAE"
     gene            complement(1431..1826)
                     /gene="spxA"
                     /locus_tag="PTC08_001699"
     CDS             complement(1431..1826)
                     /gene="spxA"
                     /locus_tag="PTC08_001699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator Spx"
                     /protein_id="HDK5683204.1"
                     /translation="MVTLFTSPSCTSCRKAKAWLQEHDIPYTERNIFSEHLTLDEIKQ
                     ILKMTEDGTDEIISTRSKTYQKLNVDIDALPLQDLYAIIQDNPGILRRPIILDDKRLQ
                     VGYNEDEIRRFLPRKVRTFQLQEAQRMVD"
     gene            2138..3127
                     /gene="trpS"
                     /locus_tag="PTC08_001700"
     CDS             2138..3127
                     /gene="trpS"
                     /locus_tag="PTC08_001700"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011276231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HDK5683205.1"
                     /translation="MQTLFSGIQPSGIPTIGNYIGALKQFVDIQDEYDCYFCIVDQHA
                     ITVPQDRLKLRKQIRQLAAIYLATGLNPEKITLFIQSEVPAHAQAGWMLTTISSIGEL
                     ERMTQFKDKSQKQSEGIPAGLLTYPPLMAADIVLYNTDIVPVGDDQKQHIELTRNLVD
                     RFNSRYNDVLTKPEIKMPEVGGRVMSLQDPTKKMSKSDDNPKNFISLLDEPKVAAKKI
                     KSAVTDSDGIIKFDKENKPGITNLLTIYSSLTGESIASLEDRYANEGYGKFKADLAEV
                     VENFLTDFQEKFNSFYESEELDKILDEGRDKAHRASFKTLKKMEKAMGLGRKR"
     gene            complement(3740..5404)
                     /locus_tag="PTC08_001701"
     CDS             complement(3740..5404)
                     /locus_tag="PTC08_001701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter substrate-binding
                     protein"
                     /protein_id="HDK5683206.1"
                     /translation="MKKQHRFKLLITSILSVLILAACGNNGGIYSDEGQVFRKVIAQD
                     MSSLDTAKVTDSVSFDKFNQVYEGLYTLDGHDNAQPGVAKGQPKISDDGKTWTIELRK
                     NAKWSNGDPVTAHDFVFAWRRVLDPDTASEYAYIMYDLKNAEQINTGKKKPSELGVKA
                     LDDYTLQFELEKPIPYYKEMLAFGTFLPQNEKVVKKFGDRYGTTAEKAVYNGPFKVKQ
                     WAVEDKILLVKNDKYWDKDVVKLDKINYKVLKDGQAGASLYDTESVDDTIISSEQVDK
                     YKGTPALQKRLLAATFYLKLNQDAVPALKNKDMRLALAKAVDKQAYVDAVLNNGSAPS
                     DGFTSKETAKAPDGKDYAEQIKSPLKYNPDEARANYEKAKKALGQSEFTFKMNTDDTP
                     ANKISAEFIKAQIEKNLPGVTIKIQQLPFKQRIAREQSGKYEISISGWGPDYPDAMTF
                     LNIMTTGNSSNNTGWSNKEYDQKIKDANGPLLSDVKKRNQTLVEAEELLLAEAPIAPI
                     YQKGEAHLTNPQVKNLQYHNIGGDTSLKYAYIDKSIDRETGKKKEK"
     gene            complement(5427..6368)
                     /locus_tag="PTC08_001702"
     CDS             complement(5427..6368)
                     /locus_tag="PTC08_001702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HDK5683207.1"
                     /translation="MNEKEVLVEVKNLKQYFNQGKRNEVRAIEDISFKIFKGETFGLV
                     GESGSGKSTTGKAIIKLNDVTDGQVLYEGVNIQEIKKRKDLLKFNKKIQMIFQDPYAS
                     LNPRLKVMDIVAEGIDIHGLAKDSKDRKKRVYDLLETVGLRKSHANRYPHEFSGGQRQ
                     RIGIARALAVEPEFIIADEPISALDVSIQAQVVNLMQKLQRERNITFLFIAHDLSMVK
                     YISDRIAVMHLGRIVELGPADEIYHNPIHPYTKSLLSAVPQPDPDSERTRTRVAYEED
                     QTKNDQRRLVACAKDHYVFATDEELKQYQTEHQSVGV"
     gene            complement(6361..7440)
                     /locus_tag="PTC08_001703"
     CDS             complement(6361..7440)
                     /locus_tag="PTC08_001703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDK5683208.1"
                     /translation="MSERVLEINDLHVSFDIEAGEVQAVRGVDLYLDKGETLAIVGES
                     GSGKSVTTKAITKLFQGQTGRIKNGSIIFNGEDLTQKSEKELMKLRGKEISMIFQDPM
                     TSLNPTMKIGKQVMEPIVRHIGLSKAEAKKRAIELLKLVGLKHVEERFNAYPHQFSGG
                     QRQRIVIALALACEPKILIADEPTTALDVTMQAQILDLMKELQQKIDTSIIFITHDLG
                     VVANVADRVAVMYGGQMIETGDVNEIFYDPKHPYTWGLLSSMPDLGMADDTALMAIPG
                     SPPDLTRPPKGDAFAARSEYALAIDFKEAPPWFKVSPTHFVRSWLLDERAPEVEPPEM
                     VKRKQRPMPNNFAKPERVERVSFNE"
     gene            complement(7455..8516)
                     /locus_tag="PTC08_001704"
     CDS             complement(7455..8516)
                     /locus_tag="PTC08_001704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDK5683209.1"
                     /translation="MSNQERHLPQDDHSGATVAQTSGIMHEDFIRTGTPDSGEQEFQR
                     EGRTFWQDAWAQLKRNKLAVVGMIGLVIIILFALIGPLLNDHDFAEQDVQRRNLPAKI
                     AVLDKVPFLPFDGQGVEGNAYEKAHVTENFWFGTDQLGRDLWTRTWQGTQVSLFIGLV
                     AALLDIFIGVIYGAISGYFGGRVDDVMQRIIEIISSIPTLIVVILFVLIFEPSIWTII
                     LAMTITGWIGMSRVVRGEFLKLKNQEFVLASRTLGSSNLKLIFKHILPNTLGAIIVTS
                     MFTVPNAIFFEAFLSFIGIGVPAPRTSLGSLVNEGRAMLLIHPHELFIPAVVLSLLIL
                     FFYLFSDGLRDAFDPKMRK"
     gene            complement(8516..>9408)
                     /locus_tag="PTC08_001705"
     CDS             complement(8516..>9408)
                     /locus_tag="PTC08_001705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDK5683210.1"
                     /translation="VISLFIIVTITFFLMKLMPGSPFNDEKLSEQQKTILNEKYGLND
                     PLPVQYGNYMKNVVKGDFGNSFQYDNQPVWDLIKPRLVPSFQMGLFAMVIGVILGVIL
                     GVIAATRQNTWVDYLATFISVIAISVPSFVLAVLLQYVFAVRLQWFPVAGWEGLSTAI
                     LPSLALSAVVLATVARYIRAEMIEVLSSDYILLARAKGNSTARVLFGHALRNALIPVV
                     TILVPMLASILTGTLTIENIFGVPGLGDQFVRSITTNDFSVIMAITLLFSTLFIASIF
                     IVDVLYGLIDPRIRLQGGKK"
BASE COUNT         2818 a         1947 c         1565 g         3078 t
ORIGIN      
        1 gctatttatc cttcacttac acgaaaccta tatcccgatt gagtcgacaa gaaaatttag
       61 actttggcat atttcacaaa gaaaataaac aggaataatt tcactactta atagaaaaat
      121 aaagatgata aacatgaata acaaaatagg tgaattattt tatacttggg atagatgaca
      181 acttaccaaa taatataatt aaatatcatt tggtaccacg tcattaatcg tgaactaagg
      241 caaagcaaga taatttctga cttcattctt atgtcattgt agagaaactg ccccaccgct
      301 ctcttctaat atgtataaaa agcattgcga aagaacacat taaaaaagac caagcgctaa
      361 tgacacttga tctcttttgg atttatttga tattcaattt attctgcttc agggaaataa
      421 cgcttcactt gttctaccac gttatgactc atcacaattt taccataatc attcaaataa
      481 aattctgttt tatcacttgg tgcagtaaac tctaaaattt gtccataata gtcatgaatg
      541 tgcgtttctg caacagtctc gtcaaaatga acaacataat aatacgtgtc atctagcata
      601 taaagcaagt cttcaaattc tgtgagacgt tgatcatttc gatgtgcata agcaatcaca
      661 tcttctaaat cttcaaactt aaagatggca gtacgtgtcg ttgtacggtt tttgctagga
      721 cgtttacgat atgactgttc tgaatcttta tggttatctg tttcttcatc tttcaacgac
      781 tgcgacaaca attcattaag ttgactatca aattcatcaa aagcgctatc ttcttcagac
      841 atttgcatta aatcatcatt tttagatttt gaaatggtta cttcgacacc tttttcgaag
      901 gcatgtactt gaatccataa tggcccttca actacaaaat cctcttcttc gttgacttct
      961 tccattactg accagaaaaa ttcttctccg cgtttacgat tcgtccaaag atcttcacgt
     1021 ttgaatccac gtgcttctat atctgtatac gtaataaaaa gttttactgt catgtcatca
     1081 attcgttcta ttctcatatc atctcactcc ttacagtcga tgaatagtaa tcctattgta
     1141 ttaaacaact tccaaaaact caatctattt gtctgtctca tacaatcttt cacgaatgtc
     1201 ctatattaag tataacacaa tctatttatc gcaccacttt tgtagctttc tctaggctat
     1261 gtctatttta tgcctagact gcacagtgac gatattgatg gaacaggtcg ttttaattat
     1321 aagtaggatg gggtgattgt tacatggata aaaacagaaa aaggactgga acgtcaatag
     1381 ttctagtcct ttgctatata actcaccatt acaatgggaa gtcaatatgc ttaatctacc
     1441 atacgttgcg cttcttgtaa ttggaacgta cgtactttac gtggtaagaa acgacgaatt
     1501 tcatcttcgt tatagcccac ttgtaatcgt ttatcatcta aaataatagg tcgacgtaaa
     1561 ataccaggat tatcttgaat aatcgcatat aaatcttgaa gaggcaatgc gtcgatgtcc
     1621 acgtttaatt tttggtaagt tttagaacgt gttgagataa tttcgtccgt tccatcttca
     1681 gtcattttta aaatttgttt aatttcatct aaagttaaat gttcagaaaa aatatttcgc
     1741 tccgtatacg gaatgtcatg ttcttgtaac catgctttcg ctttacggca agatgtgcaa
     1801 cttggtgaag taaataatgt taccatacat ctcactctcc taatttaatg aaaatgaatt
     1861 cattgtaatt taacgtttca agattgactg ctcaaagtgt gttaaaacaa ttctaatctt
     1921 tacgttttca cttctaacgc tatgattcta ttatacacct taaacattaa aattaaatga
     1981 gaaaaatgca aaataatcca atgatttcaa taatcagact ttagtagtag tttcgtcaat
     2041 ctaatcatta cgttcatcat atcataactt acaaacgatg aaaatactgt tacaataaga
     2101 gtatcgatta aacacgaaag aaagtaggct atccattatg caaacgttat tttcaggaat
     2161 tcaaccgagt ggtatcccca caatcggaaa ttacatcggt gcattaaagc agttcgtcga
     2221 tattcaagat gagtacgatt gttatttttg tatcgtggac caacatgcga ttacagtacc
     2281 tcaagatcgt ttaaagctta gaaaacaaat tcgccagctg gcagcaattt atcttgcgac
     2341 agggctgaac ccagaaaaaa tcactttatt tatccaatca gaagtgccag cgcatgctca
     2401 agcaggatgg atgttaacaa caatctcttc tatcggtgag cttgagcgta tgacacaatt
     2461 taaagacaaa tctcaaaaac aaagtgaagg cattccagct ggattactca cttacccccc
     2521 attaatggca gcggatatcg tcttgtataa cactgacatc gtacctgttg gtgatgatca
     2581 aaaacaacat atcgaattga cacgtaattt agtagaccgc ttcaacagtc gctataatga
     2641 cgttttaaca aagccagaga ttaaaatgcc agaagtcggc ggtcgtgtga tgagtttaca
     2701 agaccctact aagaaaatga gcaaaagtga tgacaatcct aaaaacttca tttctttatt
     2761 agatgagcct aaagttgctg cgaaaaagat taaaagtgcc gtgacagatt cggatgggat
     2821 tatcaaattc gataaagaga acaagccagg cattacgaat ttattgacga tttattctag
     2881 cttaacgggt gaatctattg cgtcattgga agaccgttat gcaaatgaag gttacggtaa
     2941 gttcaaagca gatttagcag aagtggttga aaacttcttg acggatttcc aagagaagtt
     3001 caatagtttt tatgaatcag aggaattaga taagatttta gatgaaggcc gcgacaaagc
     3061 acatcgcgca tcatttaaaa cattgaaaaa aatggagaaa gcaatggggt taggacgtaa
     3121 gcgataaagt gcatctcttg aatccatatt agtattcccc tctttcttaa aaagtaaagt
     3181 tgcaagtcta tagattactt cctaggtctc gcgttcccaa gggacttgcc tcaactaaat
     3241 ttgggagcag tacagaaatc gcatgtgtcg caaagatttc gtcgtactgc ccccgcaagg
     3301 ctgactagac ttctcaaaag tatatgcatt gagaagtcag acagctactg cgttaaacag
     3361 tagccactat caaagttaaa tgacgttatt ttgttttcaa cttcatccct cgggagcctc
     3421 gacctagtcg ctatcagact tacaactgct ttaatttcaa catctctttt tatttcacat
     3481 gcctattcct ttgttactct gcttattatc ataatgcctt cacttttttc tatctttaac
     3541 aattcatttg atgtgcagat aactttttta atttatctca agtttattgc tttatcctat
     3601 gattcatact cgtttattct caaagttttg ttcctctgtt tttataattc tgaccatttg
     3661 caacttattc ccacaaaaaa gcgtgttact gcataggata aacctaaaca ataacacact
     3721 ttttaactca ttctttcaat tacttttctt tcttcttacc tgtttctctg tcaatactct
     3781 tatcgatata agcgtatttt aacgaagtat ctccaccaat attatgatat tgtaagtttt
     3841 tcacttgtgg gttcgttaaa tgtgcttcac ctttttgata aattggtgcg ataggtgctt
     3901 cagctaataa aagttcctca gcctccacta aagtttggtt acgcttttta acgtcactta
     3961 acaacggtcc attcgcgtct ttaatttttt gatcatattc tttattactc caacctgtgt
     4021 tgtttgatga attacctgta gtcataatgt tgaggaaagt catcgcatct ggataatctg
     4081 gcccccaacc tgagatagaa atttcatatt ttccactttg ttcacgagct atgcgttgtt
     4141 taaatggcaa ctgttgaatt ttgattgtca cacccggtaa atttttctca atttgcgctt
     4201 taataaactc tgctgagatt ttgtttgctg gtgtatcatc tgtattcatt ttaaacgtga
     4261 attcactttg acctaaagct ttcttcgctt tttcatagtt ggctcttgct tcatctggat
     4321 tgtactttaa tggtgacttg atttgttctg cataatcttt accatcagga gcttttgccg
     4381 tttcttttga tgtaaaccca tcgctcggtg cagaaccatt gtttaacact gcatcaacat
     4441 atgcttgttt atcaaccgct tttgccaatg ccagacgcat atctttattt ttcaatgcag
     4501 gcacagcatc ttgatttaat ttcaaataga atgtcgccgc aagtaaacgt ttttgtaatg
     4561 ctggtgttcc tttatattta tccacttgtt ctgatgaaat tatcgtatca tcgacggatt
     4621 ctgtatcata aagtgacgca cctgcttgac cgtcttttaa cactttatag ttaattttgt
     4681 caagtttgac aacatcttta tcccaatatt tgtcgttttt aactaataaa attttatctt
     4741 ctacggccca ttgtttcact ttaaatggtc cattatacac ggctttttca gcagttgtac
     4801 cgtaacgatc gccgaatttt ttcacgactt tttcattttg tggtaaaaac gtaccgaacg
     4861 ctaacatttc tttataatat ggaatcggtt tttccaattc aaattgtaaa gtgtaatcgt
     4921 ctagagcctt cacaccaagt tctgaaggtt tctttttacc cgtattgatt tgttcagcat
     4981 ttttcaaatc atacataata tatgcatatt ctgaagctgt atctgggtct aatacacgac
     5041 gccatgcgaa gacgaaatcg tgtgccgtta caggatcacc gttcgaccat ttcgcatttt
     5101 tacggagttc gattgtccat gttttgccat catcagaaat tttcggttgg cctttcgcaa
     5161 cacccggctg tgcattatca tgaccatcca atgtatataa accttcatat acttggttaa
     5221 atttgtcaaa actaacagaa tcggtcactt tggctgtatc gagtgaggac atatcttgcg
     5281 caatcacttt acgaaatact tgtccttcat cactataaat cccaccgttg ttaccacaag
     5341 ctgctaatat aagtactgat aaaatagatg taatcaataa tttaaatcta tgctgctttt
     5401 tcaattgtga ttcccccttc ccgtctttat acaccgactg attggtgttc cgtttgatat
     5461 tgtttcaatt cttcatctgt cgcaaacaca taatgatctt tcgcacacgc cactaatcga
     5521 cgttgatcat ttttcgtttg atcctcttcg taagcgacac gtgttcttgt acgctcactg
     5581 tctggatcag gttgtgggac ggcagacaat aaagacttcg tataagggtg aatcggatta
     5641 tgatagattt catcagcagg tccgagttct acaattcgtc caagatgcat cacggctatt
     5701 ctgtccgaga tgtacttcac cattgataaa tcatgtgcaa taaacaaaaa tgtgatattg
     5761 cgttcacgtt gtaatttttg cattaagttg acgacttgtg cttgaatcga tacgtctaat
     5821 gctgaaattg gttcgtctgc aataatgaat tctggttcca ccgctaatgc acgggcaatc
     5881 ccgatacgtt gacgttgacc tcctgagaat tcgtgcggat aacgattggc atgacttttt
     5941 cttaatccta cagtttccaa caaatcatag acacgctttt tacgatcttt actgtctttc
     6001 gctaaaccgt gaatatcaat tccttccgca acaatatcca taacttttaa acgtggattc
     6061 agtgatgcgt atggatcttg gaaaatcatt tgaatctttt tgttaaactt caataaatct
     6121 ttacgttttt taatttcttg aatgttaacc ccttcgtaaa gcacctgtcc atctgtcaca
     6181 tcgttcaact tgatgattgc tttacctgtt gtcgatttac cagaacctga ttcgcctaca
     6241 agtccgaaag tttccccttt aaaaatttta aaagaaatat cttcaatcgc acgaacttca
     6301 ttgcgtttgc cttgattgaa atattgcttc aaatttttca cttcaactaa tacttctttt
     6361 tcattcatta aacgacaccc tttctacgcg ttctggtttg gcaaagttgt tcggcattgg
     6421 acgctgctta cgctttacca tttctggcgg ttcaacttca ggtgcacgct catctaacaa
     6481 ccatgaacga acaaaatgtg ttggcgacac tttaaaccat ggcggtgcct ctttgaaatc
     6541 aattgccaac gcatactcac tacgcgccgc aaaggcatct cctttaggtg gacgtgttaa
     6601 gtctggtggt gatcccggaa tcgccattaa cgccgtatca tctgccattc ctaaatctgg
     6661 catagatgaa agcaagcccc atgtgtaagg gtgttttgga tcatagaaaa tttcattgac
     6721 atccccagtt tcaatcattt gcccaccgta catcactgca acgcgatctg ccacgttcgc
     6781 cacgacacct aaatcatgtg taataaaaat aatagacgta tcaatttttt gttgaagttc
     6841 tttcatcaag tctaaaattt gtgcttgcat cgtaacatca agtgccgttg ttggttcatc
     6901 ggcaattaag attttcggtt cacatgccaa tgccagcgca atcacgatac gttgacgttg
     6961 accacctgaa aattgatgtg gatatgcatt aaaacgctct tccacatgct ttaagccaac
     7021 caattttaat aactctatgg cacgtttttt cgcttcagct ttacttaatc caatatgacg
     7081 cacaatcggt tccatcactt gtttcccaat tttcatcgtt gggttgagtg acgtcatcgg
     7141 atcttggaaa atcattgaaa tttctttccc acgtaatttc atgagttcct tttccgattt
     7201 ttgtgttaaa tcttctccgt taaaaataat actaccgttt ttaatgcgac ctgtttgtcc
     7261 ttggaataat ttcgttatcg ctttcgttgt aacagatttc cctgaacctg actctccaac
     7321 gatggccaac gtttcacctt tatccaagta caaatcaacg cctctcaccg cttgcacttc
     7381 ccctgcttca atatcaaagg agacatgcaa gtcattgatt tctaatacac gttcagacat
     7441 tgtacattcc tcctttactt acgcatctta gggtcaaatg catcgcgtag cccatcacta
     7501 aagagataga aaaatagaat taataaactc agtaccaccg ctggaatgaa tagctcatgc
     7561 ggatggatta atagcattgc acgtccttca tttacaagtg aacccaatga cgttcttggt
     7621 gcaggtaccc cgattccaat aaaacttaaa aatgcttcaa agaaaattgc gttcggtaca
     7681 gtaaacatcg aagttacaat aattgcacct agcgtattcg gtaaaatatg tttaaaaatc
     7741 agttttaaat tcgatgagcc taatgtacga gatgctaaaa cgaactcttg attttttaat
     7801 tttaagaatt ctccacgtac aacacggctc atcccaatcc aacctgtaat ggtcatcgct
     7861 aaaataattg tccaaatcga tggttcaaaa attaagacga ataaaatcac gacaattaac
     7921 gttggaattg aagaaataat ttcgatgata cgttgcatga catcgtcaac acgacctcca
     7981 aaatagccag aaatcgcacc gtaaatgaca ccaataaaga tatctaataa cgcggccaca
     8041 agaccgatga agagtgatac ttgtgtccct tgccatgtac gcgtccataa atcacgtccg
     8101 agttggtctg taccaaacca gaagttttct gtcacgtgtg ctttttcata ggcattacct
     8161 tcgacacctt gtccatcaaa cggtagaaat ggtactttat ctaatactgc aattttcgca
     8221 ggtaagtttc gacgttgtac atcttgttct gcaaaatcat ggtcgttgag taatggtcca
     8281 atcaaagcaa ataaaatgat aatcacaaga cctatcatcc caacgacagc aagtttattt
     8341 cgcttcaatt gtgcccaagc atcttgccaa aatgtgcgac cttcacgttg gaattcttgt
     8401 tctccactat ccggtgtccc tgtacgaata aaatcttcgt gcataattcc agaggtttgc
     8461 gcaactgtcg cgcctgaatg atcatcttgt ggtaaatgac gttcttgatt tgacattatt
     8521 ttttacctcc ttgcaagcga attcgtgggt caattaagcc ataaaggacg tccacaatga
     8581 aaattgaagc aatgaacaat gtactgaaca acaatgtaat cgccataatc actgagaagt
     8641 cattcgtcgt aattgaacgc acaaactggt caccaagtcc tggtacaccg aagatatttt
     8701 caatcgttaa tgtcccagtt aaaatactcg ctaacatcgg tacaaggatt gtgacaactg
     8761 gaatcagtgc atttcgtagc gcgtgcccaa ataatactct tgccgtcgaa ttcccttttg
     8821 ctcgagcaag taatatataa tcagaactca acacttcaat catttccgct cgaatatatc
     8881 gtgctactgt tgccaaaaca acagctgata atgcgagaga tggtaggatt gctgtagata
     8941 acccttccca cccagctacc gggaaccatt gtaaacgtac cgcgaacacg tattgtaata
     9001 atacggctaa tacgaatgac ggtaccgaaa tggcaataac cgatataaag gtggcgagat
     9061 aatctaccca tgtgttttgt cgggtcgctg caatcacccc gagtatcact cctaaaatga
     9121 caccaatcac catcgcaaat aagcccattt gaaacgacgg aactaatctc ggtttaataa
     9181 gatcccaaac aggttggtta tcatattgga atgagtttcc aaaatctcct tttacaacat
     9241 ttttcatata gttgccatac tgaacaggca gtggatcatt taatccatat ttctcattca
     9301 aaattgtttt ttgttgttca cttaactttt catcgttaaa tggcgaacct ggcattaatt
     9361 tcatcaagaa aaatgtaatg gtaacaatga tgaatagaga aataacca
//
LOCUS       DANHOL010000100         9090 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.101, whole genome shotgun sequence.
ACCESSION   DANHOL010000100 DANHOL010000000
VERSION     DANHOL010000100.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 9090)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9090)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9090
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.101"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            122..1189
                     /locus_tag="PTC08_001706"
     CDS             122..1189
                     /locus_tag="PTC08_001706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683211.1"
                     /translation="MKKYSEAIKIAFAYVGVVVGAGFSTGQEVLQFFSQFGIYSYIGV
                     VISGLILTFIGRQVAKIGTAFDAENHESTLEYLFGKKLGLVIDYVLILSLYAVTITMI
                     AGAGSTFNESFGVPTWLGALIMCIIVYITLLMDFNKIVRALGVVTPVLIVLVVLIAAA
                     SLFQGSIPFSKINSVVEKPNLGIAIWNGFNYGGLAFAVGFSTLVAIGGDASKRLVSGL
                     GGLIGGVVYLVLLGLINFALHSEYTEIKDAAIPTLVLAGKISPILTFVLSIVMLAVMY
                     NTILGLSYSFAARFTSPYTKRYYLMISIIVPLAYALSFVGFEGLIAVVYPMMGVIGLF
                     IVVAVVVKYFYRKSQDKKFIA"
     gene            1232..2257
                     /locus_tag="PTC08_001707"
     CDS             1232..2257
                     /locus_tag="PTC08_001707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HDK5683212.1"
                     /translation="MTNRRKRWILITIIILIVIAGLIAGYFFGSHASKEAENKVSIQN
                     KNVSAFENITYMEGLPNSQLDILMPKHVNADDKLPVIFWAHGGGFIAGDKQYKNPLLA
                     QIVERGYVVVNVNYALAPEYQYPTPLIQMNNAVRFIKAHEQELPINLDEVIIGGDSAG
                     AQINSQFTAIQTNAQLRAEMRFEQQFKPEQLKAAIFFGGFYDMQTVRSTEFPRIDLFM
                     RSYTGVKHWETRFKNIAEMSTKNQITSDFPATYLSVGDADPFMSQNVSFADALEKKGV
                     VVERFFFDGSHQLKHQYQFHLQKPESKENIQQVLSFLSRNTANTQVNTEVKDDIHTEI
                     NLNPYEM"
     gene            complement(2522..3043)
                     /locus_tag="PTC08_001708"
     CDS             complement(2522..3043)
                     /locus_tag="PTC08_001708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDK5683213.1"
                     /translation="MTITIREVSINDVEALTTLMQQVFEESEYMLYDPGEYMPSLENA
                     ISHIETVITSPHLTILVAENEHQLVGYLTVTTQKLRRVEHEVEISMAVLRQFQGLGIG
                     FDLIQHCKNWCREHGITRIALTVVTENKTAIHLYKRAGFKVEGEMRHTLKIQGQYYNE
                     LMMAYLLNDETTV"
     gene            3204..4124
                     /locus_tag="PTC08_001709"
     CDS             3204..4124
                     /locus_tag="PTC08_001709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-binding protein"
                     /protein_id="HDK5683214.1"
                     /translation="MKPHVLLAGGTGYIGKSLIKELRDTTTLHTISQYPKSQSHADTT
                     VIKGDIYHYADVLRAMEGMDIAVYFLDPTKHSAKLTRALAKDLNLIAADNFGRAAAKQ
                     QVKEIIYVRGSQFDEETVKQLGAYGVPIRTTEHVVKRPHISVEFQTSKYNDIRIAHHI
                     PRPQTWNLAQWIQQLRIWLTITPGTRVTVEQEGQQFKVYRKNSQQLWMQLELEMIDKD
                     LYRLVMTKGRLARLNQGKYMQIEFRYIRQFDFVIAHVFNFIPSALWPIAYFVQVPLIQ
                     MMLRGFDTKCRIRHFQYRKQNGEDLRYTKD"
     gene            4130..4810
                     /locus_tag="PTC08_001710"
     CDS             4130..4810
                     /locus_tag="PTC08_001710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HDK5683215.1"
                     /translation="MDILLVEDDQTLCQQITEALASWNFNVIKVRDFDAVLQTYLEHE
                     PHMILMDITLPKFDGFYWTRQIRQHSSVPIIFISSRDSPMDQVMSMEIGADDYVQKPF
                     HMPVLIAKLQAIFRRVYQYNQQERRTMIWQEAVVDWSKGTVTKQDHVTYLSKTEMLIL
                     EVLLQHKNEIVAREDLMTALWDDEAFVSDNTLTVNVNRLRKKLAAMGMPSVIETKVGK
                     GYIAHDNV"
     gene            4797..5819
                     /locus_tag="PTC08_001711"
     CDS             4797..5819
                     /locus_tag="PTC08_001711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HDK5683216.1"
                     /translation="MTTSRWFLYFLRERIAWILMFVVFDIIMLCFGFLDDDIPYRNLW
                     YVIGIKWIISVFFLIRIFLKETRFYMHLETFEEIEVFQKNQLAETPFEKVTLHYLETK
                     MMQLQQSIGEQQHRIDLNEQSMTEFIHDIKTPVTALKLLIEKEEHHVRKQQLMYEWSR
                     VDYMLDQHLFLARLHHQAHDMYFEKVTLRELVIDEIRQTRHIAMHKRIGFNVDISENT
                     TVYTDKRWMRMVIRQIISNAIKYSTQADIDVYQSIENGNVKLHIRDYGAGIAQHDMPR
                     IFQRGFAAQNGPHVQTSSGMGLYLVETVREALGFDIDVTSQVGEGTTVTIQFSKQNDY
                     IARMSK"
     gene            5925..6686
                     /locus_tag="PTC08_001712"
     CDS             5925..6686
                     /locus_tag="PTC08_001712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDK5683217.1"
                     /translation="MSILKVSHVSKIYGNKKQSYEALKDIHFTVEKGGFVAIMGPSGS
                     GKTTLLNVISSIDNVTRGTIEINGQDITRMSNKQLSYFRKKDVGFIFQDYNVLHTLTV
                     RENIMLPLSITKLSRQEAEMRYQEVTEALGITEIGSKYPDEISGGQKQRTAAARALIS
                     KPAIVFADEPTGALDSKSAQDLLKRLETINQQMKTTIVMVTHDPVAASYANRVIMLKD
                     GQIHTELFQGDQPVSQFYQEIIHNQSVLGGVKHAF"
     gene            6676..8574
                     /locus_tag="PTC08_001713"
     CDS             6676..8574
                     /locus_tag="PTC08_001713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDK5683218.1"
                     /translation="MRFSAIVLKNFKQNLRHYGIYLFSLMLSIALYFSFVTLKYTDSI
                     ANGENAKLLNSSAGIGEKFLFVIIIIFLMYANRLFIKRRTKSFALFQLIGLSRKDLMR
                     MMMLEQAIIFIGTTVIGLLLGLFGSRLLLLIVKKTAQIPLDIKILFEPAALTVTMILV
                     VISFILIMVQSFIFIKRRSIIQLMYDVQQSEATQANMTKAEMTFGILGIAMIGLGYYL
                     STIMLKNIELTLISAFLILFLTVVGAYFFFRSSVSLIFKSLKRSKRGYVNVTDVVFTA
                     SIMHRMKKNAFSLTVIGIISAITITLLSFATISKANIENNVNGLAPHEFTYINEGEAQ
                     KLEAYLNAKNIPYNKVVQHVIEVPIIHSGKALHKDVNSLPIISDAEVDKMDVNPGEIT
                     LVNYFKVSETFIGLDKGVTIDLGRKGKHAPLEITETSPYNVLSYRAALGRSVGIIDHK
                     TFEMLKATQIKDKDNPPITQVGFDLKSAKDVVKVESANEQFNQMLPQSRTSLEKEQLA
                     FSGMFLFVSGFLGVAFLIAAGCIIYIKQMDENEDEMANYQILRKMGYTHQDMFKGLAL
                     KIAFNFGLPLIIGLGHAFFAARAFNTLMNGVDFAPVIFAMTVYAVIYLIFAVLAYYHS
                     RRVIKFSI"
BASE COUNT         2856 a         1496 c         1885 g         2853 t
ORIGIN      
        1 catcgtgaac gctgttgtat caagggatac agacgttttt aaaactggat ggaatttgaa
       61 attaatgaat gaatatgttt taatgtttaa cgtgttttgc taacgaggag gtcaaaacag
      121 tatgaaaaaa tatagtgaag ctataaagat agcttttgcc tatgtagggg tagtggtcgg
      181 tgccggcttc tctacaggcc aagaagtact gcaatttttt agtcagttcg gtatttattc
      241 ctatataggt gtggtgattt cggggttaat cttgacgttt atcggtcgtc aagttgcgaa
      301 aatcggaaca gcgtttgacg cagaaaacca tgaatcaaca ctagagtatt tatttggtaa
      361 aaaacttgga cttgtgattg attacgtttt aattttatca ttgtatgctg taacgattac
      421 gatgattgca ggtgcaggtt caacatttaa tgaaagtttc ggcgtgccga catggcttgg
      481 tgcattgatc atgtgtatta tcgtttatat tacgttatta atggacttca ataagattgt
      541 gcgtgcatta ggtgttgtga caccggtact gattgtgtta gtagtactga ttgccgcagc
      601 atcattattc caaggatcta ttccattttc aaaaattaac agtgtagtag aaaagccgaa
      661 tttaggtatc gcgatttgga atggttttaa ctatggtggt ttagctttcg cagttggttt
      721 tagtacgctt gtagctatcg gtggtgacgc atctaaacga ttagtttcag gtttaggcgg
      781 cttaatcggt ggtgtggttt atcttgtgct attaggctta atcaactttg cgcttcattc
      841 tgaatataca gagattaaag atgcagcgat tcctacatta gttttagctg ggaaaatttc
      901 acctatttta acatttgtac tttctatcgt gatgttagcg gtcatgtata atacaatttt
      961 aggtttatct tattcattcg ctgcacgttt tacgtcacct tatacgaagc gttattattt
     1021 aatgatttct attatcgtcc cattagctta tgcattgagt ttcgtaggct ttgaaggttt
     1081 aatcgctgtc gtttatccaa tgatgggggt tatcggtcta tttatcgttg ttgcagtagt
     1141 cgtgaagtac ttctatagaa aatcacaaga taagaaattc attgcttaat taataggata
     1201 tgttacaatt tttccgaaag gaaagattgg aatgacaaat cgtagaaaaa gatggatttt
     1261 gattaccatc attattctta ttgttatagc cggtctcata gccggctatt tttttggttc
     1321 tcatgcatca aaagaggctg agaataaagt ttcgattcaa aacaaaaatg tttcagcttt
     1381 tgaaaatatt acatatatgg aaggacttcc aaacagtcaa ctagatattt taatgccgaa
     1441 acatgtgaat gctgatgaca aattgccagt cattttttgg gcgcacggcg gtggctttat
     1501 tgcaggggat aagcaatata aaaatccttt attggcgcaa attgtagagc gcggttatgt
     1561 tgtggtgaat gtcaattatg cgttggcacc ggaatatcaa tatccgacac ccctcattca
     1621 aatgaacaat gcagttcgtt ttattaaggc gcacgagcaa gagttaccga ttaatttaga
     1681 tgaagtgatt atcggtgggg attctgcggg cgcacaaatt aacagtcagt ttacagcgat
     1741 tcaaacgaat gcacaattgc gtgctgaaat gagatttgaa cagcaattta agccagaaca
     1801 attgaaagca gctattttct ttggtggttt ttacgatatg caaaccgtac gttcgactga
     1861 atttccaaga attgatttat ttatgagaag ttatacaggc gtgaaacatt gggaaacacg
     1921 atttaaaaat attgctgaaa tgtcaacgaa aaatcaaatt acgtctgatt tcccagctac
     1981 ttatttgtca gtgggcgatg cggatccatt tatgagccaa aatgtttctt ttgctgatgc
     2041 actagaaaag aaaggggtcg ttgtagaacg ctttttcttt gacggttcac atcaattaaa
     2101 acatcaatat caatttcatt tacagaagcc agagtctaaa gagaatattc aacaagtatt
     2161 gagcttttta agtcgaaaca cggcgaatac acaagtgaat accgaagtga aagatgatat
     2221 tcatacagaa attaatttaa atccgtatga gatgtagttc aataaatggc tggcggctgt
     2281 gctcaattga ttcagtagta tccatataca tcaaatgcag agaaagaggt tgggatcaaa
     2341 ttaacaccca gcctctttct ctgcatatgt ataaaggcaa gggggtggga tattaatctt
     2401 cccagcctgt tgcctatgtt ttgttggata tgaaatgatc ttaattcatc aaaaatctta
     2461 aatggattaa caatgaattt agtgattcgc tattggaaat ggtacactaa acatatcaac
     2521 gtcacacagt tgtctcatca tttaataaat aagccatcat aagctcatta taatactgac
     2581 cttgaatttt taaagtgtga cgcatttcac cttcaacttt aaatccagcc cgtttgtaga
     2641 ggtgaatggc tgttttattt tcagtgacaa cagttaatgc aattctagtg atgccgtgtt
     2701 cccgacacca gtttttacaa tgttgaatta aatcaaaccc gatacctaag ccttggaatt
     2761 gacgtaatac cgccatagaa atttctactt cgtgttcaac gcgacggagc ttttgagttg
     2821 tgaccgtcaa ataaccgact aattgatgtt cattttctgc gacgaggatg gtgagatggg
     2881 gcgaagtaat gacagtttcg atatgtgaaa tcgcgttttc taatgaaggc atatattcac
     2941 ccggatcata aagcatgtat tctgattctt caaaaacttg ttgcatcagt gtagtcaatg
     3001 cttccacatc attgatactg acttctctta ttgtaatcgt catacctaca cctccgttca
     3061 gtacataatc ataggacacg ttgttggaat tgtcataagc ttattgtatc ttaatttaat
     3121 aaatatagga aatttctaac atgatgaatt gagttttgaa aaacggatta tagattgata
     3181 ataaagtggg aaaggagcct tttatgaaac cgcatgtgtt gttagctgga ggcaccggct
     3241 atatcggcaa aagcttaatc aaagaattgc gtgatacgac gacactacat actatttcac
     3301 aatatcctaa aagtcagtca cacgctgata ctacagtgat taaaggtgat atttatcatt
     3361 atgctgatgt gttacgtgca atggaaggaa tggatattgc ggtctacttt ttagatccga
     3421 cgaagcattc agccaaattg acccgtgcct tagcgaaaga tttaaattta atcgcagcag
     3481 ataattttgg gcgtgcagca gcaaagcagc aagtgaaaga aattatttat gtgcgcggga
     3541 gtcaatttga tgaggagacc gtgaaacaac tcggggctta tggtgtccct attagaacga
     3601 ctgagcatgt tgttaaacgg ccgcatattt ctgttgaatt tcaaacatca aaatacaatg
     3661 atattcgtat tgcacaccat atcccgagac cacaaacatg gaatttagcg caatggatac
     3721 aacaattgcg tatatggctt acgataacac cgggcacgag ggttacggtt gaacaagaag
     3781 gccaacaatt caaagtgtat cgcaaaaata gtcaacagtt atggatgcaa ttagaacttg
     3841 aaatgataga taaagattta tatcgattgg taatgacaaa aggacgttta gcacgattaa
     3901 atcaaggcaa gtacatgcaa attgagtttc gttacattcg tcaatttgat tttgtgattg
     3961 cacatgtttt taattttatt ccaagcgcac tctggccgat cgcatatttc gttcaagtgc
     4021 cgttgattca aatgatgttg cgtggttttg atacgaaatg tcgcattcgt cattttcaat
     4081 atcgtaaaca aaatggagag gacttacgtt atacaaagga ctgatgaaaa tggatatact
     4141 ccttgtagaa gatgatcaaa ctttatgtca acaaattact gaagcattag ccagttggaa
     4201 ttttaatgtg attaaagtcc gcgattttga tgccgtgctc caaacttatc tcgaacatga
     4261 accgcatatg attttaatgg atattacgtt gccgaaattt gatggttttt attggacacg
     4321 ccaaattcgt caacattcaa gtgtgcctat cattttcatt tcgtctcgtg atagtccaat
     4381 ggatcaagtg atgagcatgg aaattggtgc cgatgattat gttcaaaagc cgtttcatat
     4441 gcccgtactc attgcgaaac ttcaagcgat ttttcgacgt gtgtatcaat acaatcaaca
     4501 agaacgtcga acaatgattt ggcaagaggc tgtcgtcgat tggtctaaag gaacggtgac
     4561 caagcaagat catgtgacgt atttatccaa aactgaaatg ctgattttag aagtgctgct
     4621 acaacataaa aatgagattg tggcgagaga agacttaatg acagcgctct gggatgacga
     4681 agcgtttgtg agtgataata cattaacggt caatgtaaat cgtttacgta aaaagttggc
     4741 agcgatgggg atgccgtcag tcatcgaaac aaaagttgga aagggatata ttgcacatga
     4801 caacgtctag atggttttta tatttcttga gagagcgtat cgcctggatt ttaatgtttg
     4861 tcgtttttga tatcattatg ttgtgttttg ggtttttaga tgatgacatt ccttatcgca
     4921 atttgtggta tgtcatcggg atcaagtgga ttatcagcgt gttctttttg attcgtatat
     4981 ttttaaaaga aacacggttt tatatgcatt tagagacttt tgaagagatt gaagtcttcc
     5041 aaaaaaacca acttgcagaa acgccttttg aaaaagtaac actgcattat ttagaaacaa
     5101 agatgatgca gctacagcaa tcgataggcg aacagcaaca ccgcattgac ctcaatgaac
     5161 agagtatgac ggaatttatt cacgatatta aaacacctgt gacggcgctc aagttattga
     5221 ttgaaaaaga agaacatcat gtgagaaaac agcagctcat gtatgaatgg tcgcgcgttg
     5281 actatatgtt ggaccaacac ttatttttag cacgtcttca tcatcaagca catgacatgt
     5341 attttgaaaa agtgacattg cgtgaacttg tcattgatga aatacgacag acccgtcata
     5401 tcgcgatgca caaaaggatt ggctttaacg tagatatttc tgaaaatacg acggtgtaca
     5461 cggataagcg atggatgcgt atggtcattc gtcaaattat ttcaaatgcg attaagtatt
     5521 ctacgcaagc ggatattgac gtgtatcaat cgattgaaaa cggcaatgta aagttacata
     5581 ttcgtgatta cggcgcaggg attgcacaac acgatatgcc gcgtattttt cagcgtggtt
     5641 tcgcagcgca aaatggcccg catgtacaaa cctcttctgg catggggctt tatttagtgg
     5701 aaacagtccg tgaagcactc ggatttgata tcgatgtcac gtctcaagtt ggtgaaggta
     5761 cgacggtcac gatacagttt tcaaaacaaa acgattacat cgcacgcatg tcgaagtgac
     5821 aaaactgtca catgagacat gcgttttgtc acgtgattcg cacgctttta tggttgttgt
     5881 tcgctaaaat aaaagtatca attcatcgta aaggagtgtt caacgtgtct attttaaaag
     5941 tgagtcacgt gagtaaaata tatggcaata aaaagcaatc atatgaagca ttaaaggata
     6001 tccatttcac agtggaaaaa gggggatttg tggcgattat ggggccttca ggatcgggga
     6061 agacaacttt gttaaacgtc attagttcta tcgataatgt gacaagaggg acaattgaaa
     6121 ttaacggcca agatattacg agaatgtcta ataaacaatt atcttacttt agaaaaaaag
     6181 atgtcggatt cattttccaa gattacaatg tgttgcatac tttaacagtt cgagaaaata
     6241 ttatgttgcc gctctcgatt acgaaactca gtcgtcaaga agcggaaatg cgttatcaag
     6301 aagtgacaga ggcgttaggg attactgaaa tcggaagcaa atatcctgac gagatttcgg
     6361 gaggacaaaa acaacgtacc gcagcagccc gtgcattaat aagtaaaccc gcgattgtat
     6421 ttgcagacga accaactggt gcactcgact ctaaaagcgc acaagactta ttgaaacgtt
     6481 tagaaacgat taaccaacaa atgaaaacga caattgtcat ggtaacacat gatccagttg
     6541 cggcaagtta tgcgaatcgt gtcattatgt taaaagatgg tcaaattcat acggagttat
     6601 tccaaggcga tcaacctgtt tcacaatttt atcaagaaat cattcacaac cagagcgtat
     6661 tgggcggtgt gaaacatgcg ttttagtgcg attgtcctca aaaattttaa acaaaactta
     6721 agacattatg ggatttactt gttttcttta atgctcagta tcgcacttta ttttagtttt
     6781 gtaactttaa aatataccga tagcattgca aatggagaaa acgcgaaact gttaaattca
     6841 agtgcaggaa tcggtgaaaa gtttttattt gtgattatta tcattttttt aatgtatgca
     6901 aatcgtctat ttattaaacg ccggacgaaa agttttgcgc tgtttcaact catcggttta
     6961 tcacgtaaag atttaatgcg catgatgatg ttagaacaag cgattatctt tatcggaaca
     7021 acagtcatcg gattgcttct aggattgttt ggttcgcgtt tgttgctgct gattgttaaa
     7081 aaaacagctc aaattccgct agatattaaa attttatttg aacccgcagc gctcacagtg
     7141 acgatgattt tggtggtcat ttcattcatc ttaattatgg tgcaaagttt catattcatt
     7201 aagcgtcgtt cgattattca actgatgtat gatgtgcagc aaagtgaagc gacacaagcg
     7261 aatatgacca aggcagaaat gacttttgga attcttggca ttgcgatgat cggattagga
     7321 tattacttat cgacaatcat gctcaaaaat attgaactta ccttaatttc tgcgttttta
     7381 atactctttt taactgttgt aggggcgtac ttctttttca gaagttccgt gtcgttaatt
     7441 tttaaatcgt taaaaagaag caaacgcggt tacgtcaatg tgacagacgt tgtgtttact
     7501 gcgtcgatta tgcaccgaat gaaaaagaac gctttctcat taacagtaat tgggattatt
     7561 tcagcaatta cgattacatt attatctttt gcgacgatta gtaaagcaaa cattgaaaat
     7621 aatgtaaatg gcttagcacc tcatgaattt acgtatatta atgaaggaga ggctcaaaag
     7681 cttgaagcgt atttaaatgc gaaaaatatt ccatataata aagtcgtaca acatgtcatc
     7741 gaagtgccaa ttatccattc gggtaaagca ttgcataaag acgttaacag cttaccaatt
     7801 attagtgatg cagaagttga caaaatggat gtaaatccag gtgaaatcac attagtcaat
     7861 tactttaaag tatcagaaac ttttattgga ttagataaag gtgtaacaat cgatttagga
     7921 cgtaaaggaa agcatgcgcc attagaaatt acagaaacgt ctccatacaa tgtgttatcg
     7981 tatcgtgcag ctttgggacg atctgtagga attatcgatc ataaaacatt tgagatgctc
     8041 aaagcaacgc agattaaaga taaagacaat ccaccgatta cgcaagtggg atttgattta
     8101 aaaagtgcga aagatgttgt aaaagttgaa agtgcgaatg agcaattcaa tcaaatgtta
     8161 ccacagtctc gtacatcatt agaaaaagaa caattggcat tttcaggtat gttcttgttt
     8221 gtgagtggct tcttaggtgt tgccttttta atcgcagcag gatgtatcat ttacattaaa
     8281 caaatggatg aaaatgaaga tgaaatggca aactatcaaa ttttacgtaa aatgggttac
     8341 acacaccaag acatgtttaa agggttagca ttgaaaatcg cttttaactt tggattacca
     8401 ttaatcattg gtttaggaca tgcctttttt gcagcacgag cctttaatac attgatgaat
     8461 ggtgtggact ttgcgcctgt tatttttgcg atgacagttt atgcggtcat ttatttgata
     8521 tttgcagtgc tcgcttatta tcattcgaga cgtgtgatta agttttcgat atagcaatgc
     8581 gggggaggaa gatgatgttc aggttgagcc agatgcatct ttttatcccg tcaccctagg
     8641 ttttactatt gcaacgtacc ctcgttaaac tgagatttaa cggggttttt tgttgtgata
     8701 cgtttcgttt tcttcattca taagtttgtc ctcattcatt cgctgtcttt gattttcaat
     8761 tgctaaaaat gggcgagact tctaacgaat cagatgtagc taaattaagt ggaggcaagt
     8821 ccatagaaac gcgaacctat gctactaagt gtgaatttaa aatttccgaa tcacatcacc
     8881 tcaatgataa gtttttatta tcacgttaaa gcgtgtggtg atgtaaaaat gagtcagtaa
     8941 aaagcttaaa acaattttct gagattttaa ttattttaca aaagcgacat attcaaggcg
     9001 ctttgtatcg aaaagttaca aaatacgcta caaataatgc tttcatctca ccgaaaagtc
     9061 ttatccagtg atgaaattca catcttcaca
//
LOCUS       DANHOL010000101         8959 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.102, whole genome shotgun sequence.
ACCESSION   DANHOL010000101 DANHOL010000000
VERSION     DANHOL010000101.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 8959)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8959)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8959
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.102"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(8..274)
                     /locus_tag="PTC08_001714"
     CDS             complement(8..274)
                     /locus_tag="PTC08_001714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HDK5683219.1"
                     /translation="MPNYSYTCRNCGTFTIRQNISEQHETVPCPSCHQIAKREFLPFQ
                     TYKMDHRVKQRIEKGQQPRLVKREALPKKPPRAPQVTRPWMAGH"
     gene            complement(274..1464)
                     /locus_tag="PTC08_001715"
     CDS             complement(274..1464)
                     /locus_tag="PTC08_001715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetamidase/formamidase family protein"
                     /protein_id="HDK5683220.1"
                     /translation="MSKKLFSIDLNKKMDEQAHPGHNRWHPDIPAAFSVEPGETFRME
                     CLDWTDGQISNNDDPSDIKYVNLNRVHVLSGPVYVNGVEPGDLLVVDILDVGAFPEHE
                     WGFNGIFDKTNGGSFLVDHYPNAQKSIWDFHGIFASSRHVPGVEFVGVIHPGLIGVAP
                     SQDMLVEWNRRERALVDTDPNHVPPLANLPTEDAVVLGTLKGKDFDRVAKEGARTVPP
                     RENGGNCDIKNLSKGSRIYFPVYVEGAKLSVGDLHFSQGDGEITFCGGIEMPGWIDLR
                     VNVIKEGMEKYQIKKNPAFNPSPVLPNYSDYIVFEGISVNEFSGKQTYLDANTAYRNA
                     CLNAIEFLKTRGFTGEQAYMLLGSAPVQGTVAGIVDVPNACCTIAIPREIFKPGVIPE
                     KDAF"
     gene            complement(1648..1908)
                     /locus_tag="PTC08_001716"
     CDS             complement(1648..1908)
                     /locus_tag="PTC08_001716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1871 family protein"
                     /protein_id="HDK5683221.1"
                     /translation="MANNDLNIRLYQYLADWNPMQFDDPTMGDAEVYEMMDAVHQIGE
                     AEAVAQAFQQIYQFSFDETLSYDVCLVKATEAVNMQTECNIS"
     gene            complement(1930..2523)
                     /locus_tag="PTC08_001717"
     CDS             complement(1930..2523)
                     /locus_tag="PTC08_001717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HDK5683222.1"
                     /translation="MTNYPQLTKEIQENEIKVIMHTNKGDMTLKLFPEIAPKTVQNFV
                     ELSKKGYYDGITFHRVINDFMIQGGDPTGTGMGGESIYGGPFEDEFSMNAFNLYGALS
                     MANAGPGTNGSQFFIVQMKEVPAQMVDQLVDGGWPKEIAEAYKEKGGTPWLDQKHTVF
                     GQLIEGEDTLEDIASVKVGAQDKPMYDVVIESIDIEE"
     gene            2597..2977
                     /locus_tag="PTC08_001718"
     CDS             2597..2977
                     /locus_tag="PTC08_001718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="kinase"
                     /protein_id="HDK5683223.1"
                     /translation="MLYRFAHKTGVYAVEVVEENGDQVLVKVLQVIKHPKQGDLHNPN
                     EVEGVFFHERKALSLYEKRFTSPSRLKPFEGDIEEYTVTLQRAITTLEHQLQEMDTPF
                     AHASLNCLAQLKEDYARQYKTNFS"
     gene            3104..5521
                     /locus_tag="PTC08_001719"
     CDS             3104..5521
                     /locus_tag="PTC08_001719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter subunit A"
                     /protein_id="HDK5683224.1"
                     /translation="MSWLHMAVLLPLIFAILIPILYRYYKRIHLGWFVLPIPVVLFAY
                     FLSYIKPTMSGQFTEQSAAWMPQIGMNFDVYVDGLGLLFSLLITGIGSLVVLYSISYL
                     SQSEQLGHFYCYLLMFMSAMLGVVLSDNLLVLYFFWELTSFSSFLLISFWRHKDKSLY
                     GAMKSMMITVFGGLSLLGGFILLYLASGTWRIRDIIDNVDQIQTSPIFLLAMIFVIIG
                     AMTKSAQFPFYIWLPDAMEAPTPVSAYLHSATMVKAGIYLIARLTPIFAVSQGWIWAV
                     TVFGLVTLFWGSLNATKQQDLKGILAFSTVSQLGMIMSMLGIGAVSYHFQGDESQLYL
                     AAYSAAIFHLINHATFKGALFMITGAVDHATGTRDTRKLGGLMTIMPISFTLSIITSL
                     SMAGVPPFNGFLSKEAFIESMIEVTHASVFSLNTVGLLIPIVAIVGSIFTFVYSFKFI
                     VEIFLGDHKPDVLPNKAHEASILMNISPAILAGLVILIGLFPSIVSAPLVEPAVKSIA
                     NTNEVSASFHLWHGFTPALIATLVIYVVGAVLILTAKRWVPILRGIPNALTLNHWYNQ
                     TGRYTPYYATQITRTYMTGFNRNNLVIIFFMMIVLTFVTLIFVPFTVDFMKVSPIRLY
                     EFVSVITITIAAIMIIFARSRLFSIIMLSAVGYSMAIFFIFFNAPDLALTQFVVETIS
                     TALFLLCFYHLPNMSRYNESVRYRVVNMIISIGVGAVVIVLGLIAYGNRHFESISEFY
                     KAHVYDLAEGKNMVNVILVDFRGTDTLFESSVLGIAGMGIYTLIKLRAKHKNGYERVE
                     KVEQTEK"
     gene            5484..5930
                     /locus_tag="PTC08_001720"
     CDS             5484..5930
                     /locus_tag="PTC08_001720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na(+)/H(+) antiporter subunit B"
                     /protein_id="HDK5683225.1"
                     /translation="MKGLRKLNRQKNDLIAQYSSLIIFFLIMMFGFSLFLAGHYTPGG
                     GFIGGLLVSSALVIIAVAFDVKTLRKVFPWDFKKLIAVGLTFCVGAPMLSWTYGKNFF
                     THTSVDIPLPLLQPMHVHTAVIFDTGVLFVVIGTVLTIILTIGENE"
     gene            5930..6277
                     /gene="mnhC1"
                     /locus_tag="PTC08_001721"
     CDS             5930..6277
                     /gene="mnhC1"
                     /locus_tag="PTC08_001721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002441784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter Mnh1 subunit C"
                     /protein_id="HDK5683226.1"
                     /translation="MEIVLIVVCGLLTSISVYLILSKSLIRIIIGTTLLSHAANLFIL
                     TMGGLKNGNVPIYEKGVSDYVDPIPQALILTAIVISFAVTAFFLVLAFRSYKELGTDN
                     VERMKGVPQEDDE"
     gene            6267..7766
                     /locus_tag="PTC08_001722"
     CDS             6267..7766
                     /locus_tag="PTC08_001722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000573077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter subunit D"
                     /protein_id="HDK5683227.1"
                     /translation="MMNENLIIMVLVVPIMTAILLIVSGLRPFIKRYIALTGTLVTLA
                     FSIWNLVNVWQSGHPIVLRLGSWEAPYSIVFVLDLFSALLVTTSIIITLLIILFSYQS
                     IGLHRETYYYYFTVMMMLTGINGAFITGDIFNLFVFFEVFLMSSYSLMVIGGTKIQLQ
                     ESVKYLLVNVVSSAFFVMAVGILYSIVGTLNLADISLKLNTLSEDHPDLLSVAFILFI
                     FVFATKAGVFPMYVWLPGAYYAPPFAIIAFFGALLTKVGVYAIARVMSLFFHDTLTFS
                     HYTILALALLTIIFGSVGAVGFRDTKRIILYNIMIAIGVILVGVGLMNESGMVGAIYY
                     TLHDMLIKAALFFLIGIMFKITKTTDLRKFGGLIHHYPLLGWTFFIAALSLAGIPPLS
                     GFYGKLYIVQAAFEEGFYATGIIVLLSSLVVLYSVINIFLRGFFGKSYGYVYNPRLHH
                     RGLLAVSILAVVISVVFGLTAGQLYPIVAEAAKSFYQPDTYIHSVLGVQ"
     gene            7768..8247
                     /locus_tag="PTC08_001723"
     CDS             7768..8247
                     /locus_tag="PTC08_001723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter subunit E"
                     /protein_id="HDK5683228.1"
                     /translation="MAIQIVINLFLAIFWLFVSDSYTMNAFVLGYLFALLLVFLMRKL
                     LPGRFYVITLYKVIKLVFVFLLELIKANIDVLRIILQPRIKNESAFFVYETDLEHPWQ
                     VALLSNLITLTPGTVVIGVNDDMKRLYIHCLNFSTKEEEVAGIKGSLEKAVREVGES"
     gene            8247..8540
                     /locus_tag="PTC08_001724"
     CDS             8247..8540
                     /locus_tag="PTC08_001724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na(+)/H(+) antiporter subunit F1"
                     /protein_id="HDK5683229.1"
                     /translation="MNYDIFIIIALVIVVLSILAMLVRVILGPTLPDRVVALDAIGIQ
                     LMAVIGLFSIILGTHYMIVAILLIGILAFLGTAVFAKFMDKGQVIEHDRNDHD"
     gene            8518..8874
                     /locus_tag="PTC08_001725"
     CDS             8518..8874
                     /locus_tag="PTC08_001725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000590451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter subunit G1"
                     /protein_id="HDK5683230.1"
                     /translation="MTETITISIGLILVIVGALFSALAAIGMIRLDDVYSRAHAAGKA
                     STLGAMLLLTGTFIYFIGKEGYVNFQLIIGIVFVFITGPLASHLVLKAAYNLKTPASK
                     RLKLDEIKEDMKGTKL"
BASE COUNT         2429 a         1772 c         1715 g         3043 t
ORIGIN      
        1 cgttctttta atgacctgcc atccatggtc gtgtcacttg tggtgctcgc ggtggctttt
       61 taggcaaggc ttctctttta acaagacgtg gctgctggcc tttttcgata cgttgtttaa
      121 cacgatgatc cattttgtac gtttgaaatg ggagaaattc acgtttagcg atttgatgac
      181 acgatggaca cggtacagtt tcatgttgct ctgaaatgtt ttgccgaatt gtaaatgtac
      241 cacagttcct acacgtataa gagtaatttg gcattagaac gcatccttct ctggtattac
      301 gcctggttta aagatttctc gtggtatggc gattgtacaa catgcgttcg gaacgtcaac
      361 aatgcctgca acagtccctt gcacaggtgc tgatccgagt aacatgtagg cttgctcacc
      421 agtaaagccc cgtgttttta aaaattcgat tgcatttaaa catgcattgc gataggctgt
      481 attagcatct aaataggttt gcttccccga aaattcattg accgaaatgc cttcaaacac
      541 aatatagtct gagtagtttg gcaatactgg acttgggtta aacgctggat ttttcttaat
      601 ttgatacttt tccatgcctt ccttaatcac gttcactctc aaatcaatcc atccaggcat
      661 ttcgataccg ccacaaaaag taatttcacc gtctccttgt gaaaaatgta agtcacctac
      721 tgataatttt gcaccttcaa catatactgg aaaataaatt cgcgaacctt tggataagtt
      781 tttaatatca caattcccac cattttcgcg tggaggtacg gtacgcgcac cttctttagc
      841 gacacgatca aagtcctttc cttttaaagt gccaagtacg accgcatctt cagtcggtaa
      901 gttcgcgagc ggtggcacat gattcggatc agtatctaca agtgcgcgtt ctcttctatt
      961 ccactctact aacatgtcct gagacggtgc aacaccaatt aaacccggat gaataacacc
     1021 tacaaactca acaccgggta cgtgtcgact tgatgcaaaa ataccatgaa agtcccaaat
     1081 cgatttctgt gcattcggat aatgatcgac taaaaaactt cccccatttg tcttgtcaaa
     1141 aataccgtta aagccccatt catgttctgg aaaggcaccg acatctaaaa tatcaacgac
     1201 taataaatcg ccgggttcga caccattcac atacaccgga ccacttaaca catgaacacg
     1261 attgagattc acatatttaa tgtcactcgg atcatcattg tttgaaattt gcccgtctgt
     1321 ccagtccaaa cattccatac gaaacgtttc tcctggctcg actgaaaatg ctgctggaat
     1381 atctggatgc caacgattgt gtcctggatg tgcttgttcg tccattttct tatttaaatc
     1441 aatactaaat aactttttcg acatgacaat tccccctatt gtttggatat gacagaatct
     1501 tccatcactt aagattcttt tacccacaaa acgaaaaagt acactatttt tacaattaaa
     1561 ttccaataaa atagactgta gcacttgata gactaaaaga aaaagccgat aaaaatcact
     1621 ctcaatcttt accgacttca ctattcatta agaaatattg cattccgttt gcatgttgac
     1681 cgcttctgtc gctttcacca aacaaacatc atacgataac gtttcgtcaa aggaaaattg
     1741 ataaatctgt tgaaacgctt gtgcaacggc ttctgcctcg cctatttgat gtactgcatc
     1801 catcatttcg taaacttctg cgtctcccat tgttgggtca tcaaattgca taggattcca
     1861 atccgctaaa tattgataca atcgaatatt caaatcatta tttgccacgt gatgacctcc
     1921 attcattgat tattcttcaa tgtcaatcga ttcaatgaca acatcgtaca tcggtttgtc
     1981 ttgtgcaccg actttaacac ttgcgatatc ttctaaagta tcttcacctt caatcaattg
     2041 accgaatact gtgtgttttt gatctaacca aggtgtaccg cccttttctt tgtatgcttc
     2101 agcgatttct tttggccagc cgccatcaac aagttggtct accatttgtg caggcacttc
     2161 tttcatttga acgatgaaaa attgtgaacc gttcgtacct ggacctgcat tggccattga
     2221 taacgcaccg tataagttaa acgcgttcat tgaaaattca tcttcaaatg ggccaccgta
     2281 aatactttcg ccacccatac cagtaccagt cgggtcgcca ccttgaatca taaagtcatt
     2341 gatgacacgg tggaacgtga tcccatcgta gtaacctttt ttagaaagct caacaaagtt
     2401 ttgaactgtt ttaggtgcaa tctcagggaa taactttaat gtcatgtccc ctttattcgt
     2461 atgcatgatg actttaattt cattttcttg aatttctttc gttaattgtg gatagttagt
     2521 cattttttaa tactccattc gtgataaact gttgtatata actattttaa catatttgag
     2581 agaggatggt attgacatgc tttatcgatt tgcacataaa actggtgtct atgctgtaga
     2641 ggtcgtagaa gaaaacgggg atcaggtatt agtcaaagtg ctacaagtga ttaaacaccc
     2701 gaaacaaggc gacctccaca atccaaatga agttgaagga gtctttttcc atgaacgaaa
     2761 agcgttaagt ctctatgaaa aaagatttac gtctccaagt cgcttaaaac cttttgaagg
     2821 tgacattgaa gagtatacag tgactctgca acgtgctatt actacactcg aacatcaatt
     2881 acaagaaatg gatacccctt ttgcgcatgc atccttaaat tgtttggcgc aacttaaaga
     2941 agattatgca cgccaatata aaacaaattt ttcataatat tgacgtgttt cttcttattt
     3001 aaaagtgatt gaaatctaga cgcatctatg tatagccatg tttttcagac gtttcacaat
     3061 catgtataat agatttatcg tagtttttaa aggagggcaa tttatgagtt ggttacatat
     3121 ggcggtactg ttgccgttaa tattcgcaat actcattccg atattgtatc gctactacaa
     3181 acgcatccat ctcggttggt ttgttttacc gataccggtc gtattgtttg cttatttttt
     3241 atcttatatt aaaccaacaa tgtccgggca atttacagaa cagtctgctg cttggatgcc
     3301 acaaattggg atgaactttg acgtttatgt cgatggtcta ggtttacttt ttagtttact
     3361 gattactggc attgggagtc ttgttgtact atattcaatt agttatttaa gccaatcaga
     3421 acaactcggc catttttatt gttacttgtt aatgtttatg agtgcgatgc tcggcgtcgt
     3481 cctctctgat aatttactcg tcctttattt cttctgggag ttaacatcat tttcaagttt
     3541 cttattgatt tctttttggc gacacaaaga caagtcactg tatggtgcga tgaagtcgat
     3601 gatgattacc gtttttggtg gtttatcact actcggtggt ttcattttac tttacctcgc
     3661 ttcaggcaca tggcgtattc gtgacattat cgataacgtt gatcagattc aaacgtcacc
     3721 gatttttcta ctcgccatga tttttgtgat tattggtgca atgacaaaat ctgcacaatt
     3781 tccattttac atttggttac ccgatgcgat ggaagcaccg acaccagtca gtgcatatct
     3841 tcattctgca acaatggtta aagcaggtat ctatcttatt gcccgtttaa caccgatttt
     3901 tgcagtgtca caaggatgga tttgggctgt aaccgtattt ggtctcgtga cacttttctg
     3961 gggatcgctt aatgcgacga aacaacaaga tcttaaaggg attttagcat tttcaactgt
     4021 ctctcaactc gggatgatca tgtcgatgct cggtattggt gcagtgagct atcatttcca
     4081 aggcgatgaa agtcaattat acctagccgc atacagtgca gcgattttcc atcttatcaa
     4141 ccacgcaaca tttaaagggg cactgtttat gattacaggc gccgtggacc atgcgacggg
     4201 aacgcgtgat actcgtaaac tcggtggctt aatgacgatc atgccaattt cattcacttt
     4261 atctatcatt acgtcattaa gtatggcggg ggtgccccca tttaacggtt tcttatctaa
     4321 ggaagccttt atcgaatcta tgatagaagt aacacacgcc tctgttttta gtttaaacac
     4381 agtcggcttg ttaatcccta tcgtcgcgat tgtcggaagt attttcacat ttgtatattc
     4441 gtttaaattt attgtggaaa ttttcttagg tgatcacaaa cctgatgtac ttccgaacaa
     4501 agcacatgaa gcttcaatac tgatgaatat ttcaccagcg attttagccg gtttagtcat
     4561 tttgattgga ttattcccta gtattgtctc tgcaccactc gttgaacctg cagttaaatc
     4621 cattgcgaac accaatgaag tgagtgcgtc attccattta tggcacggct tcacaccagc
     4681 acttatcgca actttagtca tttatgttgt cggtgctgta ctcatattga cggccaaacg
     4741 ttgggtacca atactaagag gtattccaaa cgcattgacc ttaaatcatt ggtataacca
     4801 aacaggacgt tacacgccgt actacgcgac acaaattacg cgtacttata tgacaggttt
     4861 caatcgcaac aatttagtca ttatcttttt catgatgatt gtccttactt ttgtgacact
     4921 gattttcgta cctttcacag ttgactttat gaaagtttcg cctatcagac tttatgaatt
     4981 tgtatcagtg attacgatta cgattgcggc gattatgatt atttttgcgc gttcacgatt
     5041 gttcagcatt atcatgttaa gtgctgtcgg atactctatg gcgattttct ttattttctt
     5101 taatgcgcct gaccttgcct taactcaatt cgtcgtagaa acgatttcaa cggcattgtt
     5161 cttactttgt ttctatcact tgcctaatat gagtcgttac aacgaatctg tacgctatcg
     5221 tgtcgttaat atgatcattt ctattggggt cggtgcagtg gtgattgtgt taggtttaat
     5281 cgcatacggc aaccgccact tcgaatctat tagtgaattc tacaaagcac atgtgtatga
     5341 cttagctgaa ggtaaaaaca tggtgaacgt gatacttgtc gacttccgtg gtaccgatac
     5401 attgttcgaa tcatctgtac tcggtattgc aggtatgggc atttacacat taattaaatt
     5461 acgtgcgaaa cataaaaacg gttatgaaag ggttgagaaa gttgaacaga cagaaaaatg
     5521 atttaattgc gcagtattca tcattaatta tctttttctt aattatgatg ttcggcttct
     5581 cacttttctt agctggacat tatacaccag ggggcggctt tatcggtggt ttactcgtct
     5641 caagtgcact cgtcataatt gcagtggcat ttgacgttaa aacattgcgt aaagttttcc
     5701 cgtgggattt caaaaagtta attgctgtag gcttaacgtt ttgtgtcggt gcacctatgc
     5761 ttagttggac atatggtaaa aacttcttca cacatacgtc tgtggatatt ccgttgccat
     5821 tgttacaacc gatgcatgtg catacagctg tgattttcga taccggcgtc ctttttgtcg
     5881 ttatcggcac agtgcttaca attattctaa cgattggaga gaatgagtaa tggaaattgt
     5941 tttaatcgtc gtttgcggct tgttaacttc catcagtgtg tacctcattc tttctaaaag
     6001 tttgatcaga attattatcg gtacaacatt attatcacac gctgcaaact tatttatttt
     6061 aacgatgggt ggacttaaaa acgggaacgt ccctatttat gaaaaaggcg tttctgatta
     6121 tgtagatccg atcccacaag cattaatttt aacagcgatt gttatttcat ttgcggttac
     6181 tgcctttttc ttagtactcg ctttcagaag ttataaagaa ttaggaacag acaacgtaga
     6241 aagaatgaaa ggagtgccac aagaagatga tgaatgaaaa cttaatcatt atggtgttag
     6301 ttgtcccaat tatgacagcg attctgttaa ttgtcagtgg actccgacct tttattaaac
     6361 gttacatcgc attaactgga acgcttgtca cgttagcatt ttcgatatgg aatttagtga
     6421 acgtatggca aagcggtcat ccgattgttt taagattggg gtcatgggag gcaccctata
     6481 gtatcgtttt cgtactcgat ttatttagtg cccttcttgt gacaactagc attattatta
     6541 cgttactgat tattttattt tcgtaccagt cgattgggtt acatcgtgaa acatattatt
     6601 actatttcac agtcatgatg atgctcacag ggattaacgg tgcatttatt acaggcgata
     6661 tctttaactt attcgtcttt ttcgaagtat ttttaatgtc atcttatagc ttaatggtga
     6721 ttggtggcac taaaattcaa cttcaagaaa gtgttaaata cttgttagtg aacgtcgtct
     6781 cttctgcctt tttcgtcatg gcggtcggca ttttatactc tatcgtcggt acattgaact
     6841 tagcggacat tagtctaaaa ttaaataccc tttctgaaga tcatccagat ttactcagtg
     6901 tcgcatttat tttattcatc tttgtatttg cgacaaaagc tggggtcttc ccaatgtatg
     6961 tctggttacc aggggcttac tatgcgccac catttgccat tattgcgttt ttcggtgccc
     7021 tacttacaaa agtcggcgtt tatgcgattg cacgtgtcat gagtttattc ttccatgata
     7081 cattgacttt ctcacactac acgattttag cactcgcatt gttaaccatt atttttggtt
     7141 cagtcggtgc agtcggtttc cgtgatacga agcgtattat tttatacaac attatgattg
     7201 caattggcgt cattttagtt ggtgtgggct taatgaacga atcaggtatg gtcggtgcta
     7261 tttactacac ccttcacgat atgttaatta aagccgcgct atttttcctg attgggatta
     7321 tgtttaaaat tacgaaaaca acggacttac gtaaatttgg tggtctgatt catcattatc
     7381 cattattagg ttggacattt ttcattgcgg cattaagttt agctgggatt ccgccattaa
     7441 gtggttttta tggcaaactt tacatcgtgc aagctgcatt tgaagaagga ttctatgcga
     7501 caggtataat cgtactgctt tcaagcctag ttgtacttta ttcagttatc aacatctttt
     7561 tacgtggttt ctttggtaaa agttacggct atgtgtacaa cccacgctta catcaccgcg
     7621 gtttattagc cgtgagtatt ttagcagtcg ttatttcggt ggtctttggt ctgacagcag
     7681 gacaactgta tccaatcgtt gcagaagctg cgaagtcatt ctatcaacca gacacgtata
     7741 ttcatagcgt attgggggtg cagtaatatg gcaatacaaa tcgtcatcaa tttattttta
     7801 gcgatatttt ggttgttcgt ctctgacagt tatacgatga acgctttcgt cttaggatat
     7861 cttttcgctt tattacttgt atttttaatg cgtaaactat tacctggacg cttttacgtg
     7921 attacgctat acaaagtcat taaactcgta tttgtctttt tactcgaact catcaaagcg
     7981 aatattgatg tattgcgtat tatccttcaa ccacgcatta aaaatgaatc tgcttttttc
     8041 gtttatgaaa cagacttaga gcacccttgg caagtcgcgt tattatcaaa tttaatcaca
     8101 ttaacacctg gtactgtcgt catcggggtt aatgatgata tgaaacgttt atatattcac
     8161 tgtttaaact tctcgacaaa agaagaagaa gttgctggaa ttaaaggctc tcttgaaaaa
     8221 gcagtgagag aggtgggcga atcgtaatga actatgatat tttcatcatt attgctttag
     8281 tcatcgtcgt tttatcgatt ttagcaatgc ttgtccgtgt gattcttggt cctacattgc
     8341 cagatcgtgt cgtggcatta gatgcgattg gcattcagtt aatggcggtc atcggattgt
     8401 tctcaattat tttaggtaca cattatatga ttgtagcgat tcttttaatt gggattttag
     8461 cctttttagg tacagccgtg ttcgccaaat ttatggataa aggtcaggtg attgaacatg
     8521 acagaaacga tcacgattag tatcgggttg attcttgtta tcgtcggtgc gttatttagt
     8581 gccctcgcag ccattggaat gatacgtctc gatgatgtct actctcgtgc gcatgctgcg
     8641 ggtaaagctt caacacttgg cgcaatgttg ttattaaccg ggacatttat ttatttcatc
     8701 ggtaaagaag gctacgtcaa ctttcaatta attatcggga ttgtctttgt atttattaca
     8761 ggtcctttag caagtcatct cgtattgaaa gcagcgtata acctcaaaac acccgcttct
     8821 aaacgattga agctggatga aattaaagaa gacatgaaag gtacaaaatt atagagatag
     8881 cgcatcttgt ctaatcaata taaagaaacg gctaggagta tttgtgtcct agccgtttct
     8941 ttatattgat tttatattt
//
LOCUS       DANHOL010000102         8785 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.103, whole genome shotgun sequence.
ACCESSION   DANHOL010000102 DANHOL010000000
VERSION     DANHOL010000102.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 8785)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8785)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8785
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.103"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            118..681
                     /locus_tag="PTC08_001726"
     CDS             118..681
                     /locus_tag="PTC08_001726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDK5683231.1"
                     /translation="MQHFRLAVNDDIDFVYPTLKYAPALYKVINQNRDHLKTFLRWAE
                     TMTSVEKEAAFMQQTLSLVAEGKALFFLIYKQDQLIGTIDLHAWNEKTRKAEVGYWLA
                     KSENGQGITTAAVRKLCEIAFTDYHLNKLELRANVRNIGSNRVAEKVGFRFVGVKHED
                     DIEEGQYVSVNHYECLKLDFNHVGDDT"
     gene            complement(915..2084)
                     /locus_tag="PTC08_001727"
     CDS             complement(915..2084)
                     /locus_tag="PTC08_001727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF418 domain-containing protein"
                     /protein_id="HDK5683232.1"
                     /translation="MASTPKKQRIIELDALRGMSLFGILLMNILVFSFPYEHVRLDVA
                     LQGVNGFLFRVVSLLVIGSFYPIFSFLFGFSLMLIYNSTQQRGIAFKPVMIRRLIFLA
                     LLGLIHGFFFYSGDILFTYAVMGFGAMWCTKSSVKRLKNAAIILFAIKVVIWGLPFLI
                     MGWMTKAKLPFSGGSQAELNNVLQAQTSVHYIDFFLYNAQDNFSNIAATLTLDWLDIF
                     PYLLLGMAAMKGHFVTWVKEHPTRAIKWGSLFIIIGVLIKFLGAYAITNPGYMMFSFT
                     VGGPLLSVGIVLLFFHMMQYHTAQKFLDPFRYLGKMSLSVYLSQTLVCMFFFAGFGLG
                     FYNQLPLYQTYLFALALFLVQVVICYVYQRQFTQGPIEWVWRKVTYFGVKTMSSK"
     gene            complement(2188..2751)
                     /locus_tag="PTC08_001728"
     CDS             complement(2188..2751)
                     /locus_tag="PTC08_001728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HDK5683233.1"
                     /translation="MGKTKSKARRRIVKAMIELLKTESFDEITIKQICAESGVHRSTF
                     YAQFEDKYQLFDVLTTYHMAKYEKLILYTSKVFESYPLEEAKARVIQTFRLLFKYMKR
                     HQTFFTTIIVTQPQLKAIHQYLKFTRDAYEKLLNQLPQLQQSKYFINYTIGGELALIY
                     SWLMQGCQESPDDMAQILYANIIKTGR"
     gene            2878..3525
                     /locus_tag="PTC08_001729"
     CDS             2878..3525
                     /locus_tag="PTC08_001729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family secretion protein"
                     /protein_id="HDK5683234.1"
                     /translation="MKKLIMINIVTIIVLIIGGIVGFYFYNQSVNYIKTDNAQVDGDQ
                     IKIASPVSGKMSSLDVREGDTLKKGDTVAKVQGASQGEAPQTMTITMPKAGTIAKLDG
                     QEDGIAQAGQPIAYAYDLDDLYITANIDETEVKDVQNGQDVDVTIDGQDAKVKGKVDQ
                     IGHATASSFSLMPSSNSDGNYTKVTQVVPVKIKLNSQPSNSVVPGMNAEVSIHKN"
     gene            3542..5392
                     /locus_tag="PTC08_001730"
     CDS             3542..5392
                     /locus_tag="PTC08_001730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DHA2 family efflux MFS transporter permease
                     subunit"
                     /protein_id="HDK5683235.1"
                     /translation="MFMMIYTIVALIVIIILNWTIIRGRKRRSLSQQHRDVTPDTTQS
                     ERDAHPTTHTFRLDEDHQHSVASTHQNQSEEDAFHTTSAENDDTSLHATANQNKTARR
                     PVNEQVADATQNYVFKKGATRGKILTAMIFGMFISILNQTLLNTALPRINTDFNISAS
                     TGQWLMTGFMLVNGILIPISAFLFNKYSYRRLFLTAMLIFTIGSLVCGFAWSFSIMMV
                     GRVLQAMGAGVLMPLGTNVFMTIFPPEKRGMAMGTMGIAMILAPAIGPTLSGYIIENY
                     DWHTMFFGMFIVGIISLALAFVWFGIYQKTTNPKADIPGIIFSTIGFGALLYGFSEAG
                     NDGWTSTKIIIMFMIGISFTVAFVVREMTMKAPMLSFEVLKYSGFTLTAVINMILTMS
                     LFGGMILLPLYLQSLRGFSALDSGLLLLPGALIMGVMGPIAGKLLDTIGIKPITIIGL
                     AITTYGTWELTQLTMDTPYRSILMIYIIRSFGMSFVMMPIMTAGMNALPSRLISHGNA
                     LVNTMRQLAGSIGTAILVTVMTQQTESHLATFQQDLDRTDPTIQDSLQALAQQLGGQE
                     QAMGAIIKFVNQLASVDGVNSAFWVATALSGLALILSFFLKGKSHYISNE"
     gene            6321..6641
                     /locus_tag="PTC08_001731"
     CDS             6321..6641
                     /locus_tag="PTC08_001731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HDK5683236.1"
                     /translation="MSYQALSKILKILADPSRLEILDILSCGELCACDLLAHFDFSQP
                     TLSYHMKALVDNELVFTRKSGNKRLYRLNRALLEAVNANINFIHTAHERCICHDIISG
                     ECGA"
     gene            6638..7927
                     /gene="arsB"
                     /locus_tag="PTC08_001732"
     CDS             6638..7927
                     /gene="arsB"
                     /locus_tag="PTC08_001732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011304041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenite efflux transporter membrane subunit
                     ArsB"
                     /protein_id="HDK5683237.1"
                     /translation="MTFLAIVIFLFTLVFVIWQPKNLDIGVTALIGAFLALVSGVVSF
                     SDVVEVTGIVWNATMTFIAIILISLILDEIGFFEWSAIHMAKAANGNGLKMFVFVMLL
                     GAVVAAFFANDGAALILTPIVLAMVRHLGFNQKAVFPFVIASGFIADTTSLPFIVSNL
                     VNIVSADYFDIGFIQYLSRMFIPNLFSLMASIFILWLYFKKSIPRTFDIQNLTLPKEA
                     IKDHKLFNVSWAVLALLLVGYLVSEFVKIPVSFIVSSIALIFILFARQSKVIRIKQVI
                     KGAPWHIVLFSIGMYLVVFGLKNAGITTILADILTHISSYGLFSSVMGMGFIAAFLSS
                     MMNNMPTVLIDAIAIGQADVVGAIKEGMIYANVIGSDLGPKMTPMGSLATLLWLHVLT
                     QKGVKISWGTYFKIGIITTIPVLFITLLGLYLTFILF"
     gene            7943..8347
                     /gene="arsC"
                     /locus_tag="PTC08_001733"
     CDS             7943..8347
                     /gene="arsC"
                     /locus_tag="PTC08_001733"
                     /EC_number="1.20.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenate reductase (thioredoxin)"
                     /protein_id="HDK5683238.1"
                     /translation="MHKKTIYFICTGNACRSQMAEGWGKHILGDDWDVYSAGIETHGV
                     NPQAIKAMEEVGIDISSHTSDLIDPQIIQQSDLVVTLCSDADQNCPTIPSHVKKEHWG
                     FDDPAGKDWSEFQRVRDEIGEKIKVFHAHTES"
BASE COUNT         2745 a         1534 c         1832 g         2674 t
ORIGIN      
        1 gcgttttata gattgcaatt gacgcaagtg cttgtaaaat tcagtttgaa gacagattgt
       61 tttaattgtt gtatttgtgt ataataatct gaaaactaaa ggtaaggggt gagtggggtg
      121 caacatttta gactcgcagt gaatgacgac attgattttg tttacccaac acttaagtat
      181 gcaccagcgc tttataaagt tataaatcaa aatcgagatc atctcaaaac ttttttacga
      241 tgggcagaaa cgatgacctc tgtggaaaaa gaagcggcat ttatgcaaca aactttaagc
      301 ttagtagcag aggggaaagc gctatttttc ttgatttata aacaagatca actcattggg
      361 acaattgatt tgcatgcttg gaatgaaaaa acacgtaagg cagaagtcgg ttactggctt
      421 gcgaaaagtg aaaatggtca agggataacg acagctgcag tacgcaaatt atgcgaaatt
      481 gcatttacgg attatcacct caataaatta gaattgcgtg cgaatgtacg taatattggt
      541 agtaatcgtg ttgcagaaaa agtgggattt cgtttcgttg gcgtcaaaca tgaagatgac
      601 attgaggaag gacaatatgt gagtgtgaat cattatgaat gtttgaaact cgattttaat
      661 catgtgggag atgatactta atatatgtaa atattacatc ttttgtgaga caattcataa
      721 aaaaacaata aatttctaat atttgtatcc caaaatgatg caaaacatga tacagtaagg
      781 gtaagcaaaa gatatgacag taaacatatc attttgtgtt tttcattttc aaaaagttct
      841 ccaataaaag ggcctgttca cattgatagc gtagcgacta tgaatgattg aacaggcctg
      901 tttaacgtgt gcgcttattt tgatgacatc gttttgacgc cgaaatatgt aacttttcgc
      961 cacacccatt cgatgggacc ttgtgtgaat tgacgttggt agacataaca aatcacaact
     1021 tgtacgagga agagggcgag cgcaaataga taagtttgat aaagcggtaa ttgattataa
     1081 aatccaagac caaaacctgc aaaaaagaac atacagacaa gcgtttgaga taggtacacg
     1141 gacaaactca tttttccaag atagcggaac gggtcgagga acttttgtgc tgtgtgatat
     1201 tgcatcatat ggaaaaagag aagcacgata ccgacagata ataacggacc gcccactgta
     1261 aaactgaaca tcatatagcc agggttcgtg atagcatatg cacctaagaa tttgatgagc
     1321 accccgataa tgataaaaag gctgccccac tttatcgcac gtgtcgggtg ttccttgacc
     1381 caggtgacga aatgcccttt catcgctgcc atgcctaaca ataaataagg aaaaatatcg
     1441 agccaatcaa gcgtcagtgt tgctgcaatg ttgctgaaat tatcttgtgc attataaagg
     1501 aagaaatcaa tataatgcac actcgtttga gcttgtaaca cgttgttcaa ttctgcctga
     1561 gacccgccac tgaacggtaa tttcgctttt gtcatccatc ccatgataag aaagggcaga
     1621 ccccaaatga cgactttgat tgcaaataaa atgatcgctg cattttttaa tcttttgaca
     1681 gaggattttg tgcaccacat cgcgccaaag cccatcaccg catatgtaaa tagaatatct
     1741 cctgaataaa agaaaaaccc gtggattaac ccaagtaacg ccaaaaaaat aagccgtcgt
     1801 atcatcacgg gcttaaatgc gataccgcgt tgttgtgtgc tgttatatat gagcatcaaa
     1861 ctgaatccga ataagaatga aaaaatcgga taaaatgaac caataacaag taatgacacc
     1921 actcgaaaca aaaagccatt gacgccttgg agtgcaacgt ctaagcggac atgctcataa
     1981 ggaaaactaa acactaaaat attcatgagt aaaataccaa acaaactcat cccacgcaac
     2041 gcatctaact caatgatacg ttgctttttg ggggtggaag ccatgatgca taacctcact
     2101 tttcttcttt attaaaaatt cgacaaagct gtgtatcatg taggtcagtt ggattgtatc
     2161 acatgtgtgt catgtccgac agtgaaacta tctgcccgtt ttaataatgt tagcatacaa
     2221 aatttgcgcc atatcgtcag gagattcttg acaaccttgc atgagccaac tgtaaataag
     2281 cgcaagttca ccgccaatcg tatagttgat aaaatatttg gattgttgca attgaggcag
     2341 ttgatttaat aacttttcat aagcgtcacg cgtaaatttt aaatattgat gaatagcttt
     2401 taattgcggt tgtgtcacga taatagtcgt gaaaaaggtt tggtggcgtt tcatatattt
     2461 aaacagtaga cgaaatgttt ggatgacacg cgcttttgcc tcttctaacg ggtaagactc
     2521 aaacactttt gatgtataca aaataagctt ttcatacttt gccatatgat atgtcgtcaa
     2581 aacatcaaac aattgatatt tatcttcaaa ttgagcgtaa aacgttgaac gatgtacacc
     2641 gctctctgca caaatctgtt taatggtaat ctcatcaaag gattccgtct ttaataattc
     2701 aatcattgcc ttcacaatgc gccgtcttgc ttttgatttt gtttttccca tattatcacc
     2761 atcattatta tattataaat ttcaatccga cacatttgtc aagattgtct gtatttttca
     2821 aaagtgaatt atcttataat acagaagtta aattgattga gaaaaggagt agtaaacatg
     2881 aagaaattaa tcatgataaa tattgttacg attatcgtgt taattatcgg ggggattgta
     2941 ggattttatt tctacaatca atccgtgaac tatattaaaa cagataacgc acaagtggac
     3001 ggggaccaaa ttaaaattgc cagcccagtg tcaggaaaaa tgagtagctt agatgttcgt
     3061 gaaggcgaca cattgaaaaa aggggatact gtcgcgaaag tacaaggtgc aagtcaaggt
     3121 gaagcgccac aaacgatgac gattacgatg cctaaagctg ggacaatcgc aaaattagat
     3181 ggtcaagaag acggtatcgc gcaagcaggt caaccgattg cttatgctta tgaccttgac
     3241 gacttatata tcacagcaaa cattgacgaa acagaagtaa aagacgttca aaatggtcaa
     3301 gatgtggatg tgacgattga cggtcaagac gcaaaagtaa aaggtaaagt tgatcaaatc
     3361 ggtcatgcaa ctgcctcaag tttttcatta atgccatcat cgaatagtga cggtaactat
     3421 acaaaggtga cacaagtggt gcctgttaaa atcaaattaa acagccaacc ttctaacagt
     3481 gttgttccag gcatgaatgc tgaagtaagt attcacaaaa attaagagag ggggtcatca
     3541 catgtttatg atgatttaca ccatagttgc tcttattgtg attatcatac tgaactggac
     3601 aatcattcga ggaagaaaga gacgatcact ttctcaacaa catcgtgacg tcacaccaga
     3661 caccacgcaa tctgaacgtg atgcacatcc gacgacacat acttttcgtt tagatgaaga
     3721 tcatcagcat tcagtagctt cgacacatca aaatcaaagt gaagaggacg cgtttcatac
     3781 gacatctgct gaaaatgatg acacaagtct acatgcgaca gcgaatcaaa ataaaactgc
     3841 acgtcggccg gtcaacgaac aagtagcaga tgcgacacaa aattatgttt ttaaaaaagg
     3901 ggccacacgt ggaaaaattt taactgcgat gatttttggg atgttcattt ctattttgaa
     3961 ccaaaccttg ttaaacacag cactacctcg aatcaacaca gattttaata tttctgcttc
     4021 aacaggacaa tggttgatga caggctttat gttagtgaac gggattttga ttccaattag
     4081 tgcattctta tttaacaaat actcatatcg tcgcttattc ttaactgcga tgttgatatt
     4141 tacgataggc tcactcgtct gtggtttcgc ttggagcttt tcgattatga tggtcgggcg
     4201 tgtgcttcaa gcgatgggtg caggggtgct catgccatta gggacgaatg tatttatgac
     4261 aatcttccca cctgaaaaac gtggtatggc catgggaaca atggggattg cgatgatttt
     4321 agcaccagcc attggaccta cactgtcagg ttatattatt gaaaactatg actggcatac
     4381 gatgttcttc ggtatgttta ttgtcggtat tatttcactc gcgctcgcat ttgtttggtt
     4441 cggcatttat caaaaaacga cgaatccaaa agcagatatt ccgggtatca ttttcagtac
     4501 aattggtttc ggggcattgt tatacggctt tagtgaagca ggtaacgatg gctggacgtc
     4561 cacaaaaatt atcattatgt ttatgatcgg aatcagcttt acggtggcgt ttgtcgttcg
     4621 cgaaatgaca atgaaagcgc caatgttgag ttttgaagta cttaaatatt caggatttac
     4681 attaactgca gtgattaata tgattctcac aatgagtctt ttcggtggta tgattttact
     4741 accactttat ttacaaagtt taagaggttt ctcagcgcta gactctgggt tattactgtt
     4801 accaggtgca ttaattatgg gtgtgatggg acctatagct ggtaaattac ttgatacaat
     4861 agggattaag ccgattacga ttatcggttt agccattaca acatatggca cgtgggaact
     4921 gacacaatta acgatggata caccttatcg tagtatttta atgatttata ttatccgttc
     4981 gttcggtatg agttttgtaa tgatgccgat tatgacagca ggaatgaacg cattgccgtc
     5041 acgtttaatc tcccatggta atgccttagt caatacgatg agacaattag ccggctcaat
     5101 tggtacggca atcttagtga cagtgatgac gcaacaaacc gaatcacatt tggcaacatt
     5161 ccaacaagat ttagaccgta cagatccaac gattcaagat agtttgcaag ccttggccca
     5221 acaactcggt ggccaagagc aagcgatggg ggctataatt aaattcgtca atcagcttgc
     5281 ttctgttgat ggggtcaaca gtgctttctg ggtcgcgacg gctttaagtg gtttagcact
     5341 cattttaagt ttcttcttaa agggcaaatc acattacatt tcaaacgaat agtcaatcaa
     5401 tacgtttaag agatgggtgt aaaaattttg atgttattga tgcagtattt tgttaaactt
     5461 gccctctccg tacgatttgt atttttgatt gctttcatgg cttctctttc ctaggggatg
     5521 aagggaggtt gtgacaaaag cgcttaggat ttgagcagaa ccgagcgatg agcaaaattg
     5581 ctttccaaat tttgccgaaa tcgcggggat tctgtcgaaa atcctgcttt tggaacaccg
     5641 tttattgatt cccagcgcac ccattcattg tagattttgg gagcagtata gaaatctcat
     5701 gtgtaacaaa gatttcgttg tactgtaccc cgcaaggctg actcgacttc tcaaaagcat
     5761 gcgccttgag aagtcagaca gctactgctt taaacggtag ccaattttaa agtaaagaag
     5821 tgactgctag cagtatgcac gcctcccctc aggagtgtca gccttctggg caatcttaca
     5881 cttaatatag cgaaactgag ggcaagtttt tgaaatctgg caaaacaata gcatctattt
     5941 ttatgactta ttcaccttcg atttttgact attataaaat gtaaatgaat gatcatttta
     6001 tgcagagata aattgttgaa aatttatgtc tcatacctac ttgtatatga agtacgaggg
     6061 agtgggcgac agaggcattg acgtcgggta tatgaaacga ggactggtga gattgaactc
     6121 aaatcttgtc ggtcctcttt ttgtatgtca tagctaatag ctggctgatg gcacaaacat
     6181 aatcgaaagg gacatgattc aaaatgttgg gtgtatgagt aacaccaatt gttaagtcgt
     6241 attttttaaa gcttacaaaa tactacatag acaactatct atatagatgt taaactattt
     6301 gaagtttagg aggtatatag atgtcatatc aagcactttc caaaatatta aaaattttag
     6361 ctgatccgag tcggttagaa atactcgaca tcctttcttg tggggaattg tgtgcttgcg
     6421 atttgttggc acactttgat ttttcgcaac ctacgctcag ttatcatatg aaggctttag
     6481 tcgataacga gttggttttt acaagaaaaa gcggtaataa acgcctgtat cgactgaatc
     6541 gcgcattgtt agaagcggtt aatgcaaaca tcaacttcat tcacactgcc cacgaacgct
     6601 gtatatgtca cgatatcata tcgggtgaat gtggcgcatg acatttttag caattgttat
     6661 tttcctgttc actttagttt ttgtgatttg gcaacctaaa aatttagata tcggtgtgac
     6721 tgcattaatc ggtgcatttt tggcgttggt ttcaggtgtt gtcagctttt ctgacgtagt
     6781 tgaagttact ggaattgtat ggaatgcgac tatgacattt atcgctatta ttttgatttc
     6841 gctcatatta gatgaaattg gattttttga atggtctgca atacatatgg ccaaggcagc
     6901 aaacggtaat ggcttgaaaa tgtttgtttt tgtgatgtta ttgggtgcag tagtggcagc
     6961 attttttgcg aatgatggtg cggcccttat attgacaccg attgttttag cgatggtccg
     7021 ccatttaggt tttaatcaaa aggcggtttt cccgtttgtg attgcaagtg ggtttattgc
     7081 tgatacgaca tcgctcccgt tcatagtaag taatttagtc aatattgttt ccgcggatta
     7141 ctttgatatc ggctttattc aatatttgag tcgtatgttt attcctaatc tcttctcgtt
     7201 aatggcgagc attttcattt tatggctata tttcaaaaaa tcaatacctc gaacattcga
     7261 cattcaaaat ttaacattac ccaaagaggc gattaaagac cacaaattat ttaatgtgtc
     7321 gtgggctgtt ttagcattac tactcgtggg ttatttagtg agtgaatttg taaaaatccc
     7381 tgtatctttc attgtgtcaa gtattgcatt gatattcatt ttgttcgcac gccaatccaa
     7441 agttatacga atcaaacagg tgattaaagg tgcaccatgg catatcgttc ttttttctat
     7501 tgggatgtat ttggtggttt ttggtttgaa aaatgcaggg attacaacga ttttagcgga
     7561 tatattgacg catatttcga gttatggttt attcagtagc gtgatgggta tgggatttat
     7621 tgcagcattt ctgtcttcta tgatgaacaa tatgccgact gttttaatag acgctattgc
     7681 gattggccaa gctgatgtgg taggtgcaat taaagaaggc atgatttatg cgaatgtcat
     7741 tggttctgac ttaggaccta aaatgacgcc aatgggttct ttagcaacat tattatggtt
     7801 acatgtatta actcaaaaag gcgtcaagat ttcatggggg acatacttta aaatcggtat
     7861 catcacgacg atacccgtat tatttattac acttctaggt ttatacctga cattcattct
     7921 attttaagga agagggttga agatgcataa gaaaaccatt tattttatat gtactggaaa
     7981 cgcatgtcgc agtcaaatgg ctgagggatg gggcaaacac atattaggtg atgattggga
     8041 tgtttattct gctgggattg aaacacatgg cgtgaatcca caagcaatca aagcaatgga
     8101 agaggtcggt atcgatatct cgtctcatac ttcagacttg attgatcctc aaatcatcca
     8161 acaatcagat ttagtggtca cgctatgtag tgatgcagac caaaattgtc cgacgatacc
     8221 atcacacgtt aaaaaagaac attggggctt tgatgatcca gcgggaaaag attggtcaga
     8281 atttcaacgt gtgcgagatg aaattggcga gaaaattaag gtgtttcatg cacatacaga
     8341 aagctagaat catgtgaacg tgatgccttt gaggccaata gacagggcat aacataacta
     8401 tgaagtgata tgaaggcgca atcaatagat gacaagaaaa gcaggcgggg gatgttcccg
     8461 aacctgcttt ttctatagtt gaataaaagt atacgatgcg ctatgcatag ggttccggaa
     8521 aggttctacc gttgtattaa aacaggcacc tcaacatgct agaataatat ttggtcagct
     8581 ccatagggct ttttcgacag tctaatacga tactacaaat tgcatagtgt tttcatgata
     8641 tatgaattaa aaattaaact tagtatttaa cattttaatc aattcttcag aagcgctaat
     8701 tacatcaata gtatcaacac caatttttaa taaagatgta tcatcataaa aaatgataaa
     8761 agcttgaatc tgactattct tgata
//
LOCUS       DANHOL010000103         8489 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.104, whole genome shotgun sequence.
ACCESSION   DANHOL010000103 DANHOL010000000
VERSION     DANHOL010000103.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 8489)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8489)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8489
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.104"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            31..495
                     /locus_tag="PTC08_001734"
     CDS             31..495
                     /locus_tag="PTC08_001734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDK5683239.1"
                     /translation="MDRQSFTELIQSKFKMVRIEAGYTQDTMAQTIGLSKKTLVQIEK
                     ERVLPNWTTCVSICALFRDSEVLNGTFGCDPLEIVQTISRNQAAYPRYSTVSDIYWDT
                     LASKNGYILQSNKVSELYRILDADKQPIFASPKLREAETYFQRNVKEELIRA"
     gene            720..1850
                     /locus_tag="PTC08_001735"
     CDS             720..1850
                     /locus_tag="PTC08_001735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF445 domain-containing protein"
                     /protein_id="HDK5683240.1"
                     /translation="MQAILVVLFMIVIGAVIGGVTNMIAVKMLFHPFKAYYIFGKRVP
                     FTPGLIPKRRGEIAEKIGQVVEDHLLTESLMREKLETPDMRATVHRAVSQQVAALEEN
                     HMTMQSLVERFDIDVVKDGESFVERYTKQKLNEKYQLHQTDKIAELIPAKVMAEIDHK
                     VSTLDTLLLERARIYLESDKGYDDILEMLETFFVEKGKIVSMLQMFMTKEAIAERIQR
                     ELIRLTTHSKARGILSAQIHAEYEKLKHATLQDWIKPEQMADIEAQVSALVLKQIDLK
                     QRAHMPLKSLVPHLFEMLHDRGIDRITDLILDTLAQRLSTILKQVNIRGLIEEQINRF
                     DLDYIERLIFEIANKELKLIMLLGFILGGIIGFFQGLIAIFV"
     gene            1939..2283
                     /locus_tag="PTC08_001736"
     CDS             1939..2283
                     /locus_tag="PTC08_001736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002498160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlbF/YmcA family competence regulator"
                     /protein_id="HDK5683241.1"
                     /translation="MAVNLYDYANKLEQALRESDEYNAIKDAYAKVEADENSKKLFDA
                     FRETQMNFQQKQMQGEEISEEDLQKAQEQAQQIEKDSNISELMNAEQKMSQVFQEINQ
                     IIVKPLDEIYAD"
     gene            2537..3724
                     /locus_tag="PTC08_001737"
     CDS             2537..3724
                     /locus_tag="PTC08_001737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019164983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair exonuclease"
                     /protein_id="HDK5683242.1"
                     /translation="MVKFLHCADLHLDSPFASKRYLNPTILKDVENSAYKSFENIIDL
                     ALREEVDFVIISGDLFDQHNRTLKAEVFLKSQFERLQKEQIFVYIVHGNHDPLSDEIK
                     TKWPENVTVFSNQVETYQAITKTGETVHLHGFSYEKRESYENKIDAYPTNENRNVVHI
                     GVLHGTYSKSEASDRYTEFRLEDLNAKLYHYWALGHIHLRQQLSDMPEIHYPGNIQGR
                     HFKEQGEKGCLIVEGDHVALKTRFVPTQFIRFESATLETEDISQQALFELIQDFKARV
                     RHQGRAFYRLQLNIRGDEMISPQVLEQLKVLSTEYEENERHFVLIDEWDIRYIDIRQK
                     SIIQEFPAELLEQDDVYERAVKDLYMNPKASKYLESYQQHDRKALVARAEAIIEAELK
                     GGN"
     gene            3728..6652
                     /locus_tag="PTC08_001738"
     CDS             3728..6652
                     /locus_tag="PTC08_001738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019164984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDK5683243.1"
                     /translation="MKIKSVEIYGYGQFVQRKVEFDQYFTEIFGQNEAGKSTLQAFIH
                     SILFGFPTKKENEPRLEPRMGNHYGGRVTLILDDGMEVDVERVKGSAQGDVKVYMPNG
                     SIKDEAWLKAQLNYINKKTYQAIFSFNVLGLQDIHKHMSEVQLQNFLMQAGALGSTEF
                     IGMRELINQKKQELYKKSGQNPEINRKIEEVRNLEYQIREESAKMESYQRLTEEHEKA
                     SRRLDTLKQNLSQLTALFEEKQKEVALIDQVQEWKGLEADLNIEPLEFPEKGIDRYEL
                     AKVQVDHLERDIGLRVEKQQQLQNENSQLYVPEKSLYQNFESIAKQEDRVKQQDMELK
                     QNEREFNQHEMEIKSLKSHIGWKEVHDDVDSSEAQKSFASETLKQKQEHLQTIQQLKK
                     TQDDYQIETVSFEEELEHLSSQLVDDENFEKKKVYDQRLLELKEKRNLFDKMKTSFEQ
                     EAEQKAQQQRRVRGASFFLAIISIAFAIWMFVTEAMVAGIVLTVMAIVFIIGMTLFRS
                     KPVGYDTQFSEELAQLEQEVEQLEAEYDLDFDLSTQYQLRDQIAQRQQQLAILKTKTQ
                     HAKTQYEDTQMAWADATSKLQQLKASLHLSENLSDELLVDAIQTIQMIKDHQQYIEKL
                     HEAYLKLSESLESFYTEVNDKIGSVFQEIDRNTLFHDVREWLKTTSRDMTRHEHNTEQ
                     LNLLENELKHLKHRLNENHQEIQTLFGAIGALDEESYYKHHERYQRYHERLARFNDLT
                     HFLDNQNYGYEKSSKLSEKTTAQLDEEYQKLSEQIDTYNERFLESQSEVSDLLAQMNH
                     METDDTLRHLRHQYQLLRNQLNESAEDWAALSYLEALVDEHIKQIKDKRLPQVVNIAT
                     DIYNDLTSGQYVQVTYANEQVMVRHQDGQMYHPIELSQSTKELLYIALRLSLIHTLKP
                     YYSLPIIIDDAFVHFDAERRAQMMKYLRGMSEEYQILYFTCSRDTNIPAKQLVTLNKI
                     DK"
     gene            6671..7612
                     /gene="yhaM"
                     /locus_tag="PTC08_001739"
     CDS             6671..7612
                     /gene="yhaM"
                     /locus_tag="PTC08_001739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exoribonuclease YhaM"
                     /protein_id="HDK5683244.1"
                     /translation="MRNIEKLQPGDTVDHFFLIHRATQGVTAQGKDYMTLHLQDKSGE
                     VEAKVWTITKEGMNQLKPERIVHIKGDMINYRGRKQMKVNQFRVATEEDGLRTQDFID
                     GAPMSPEEIKDAMQDYIFEIDNAPLQRVTRYLLNKHEESYFVYPAASTHHHNFVSGLS
                     YHVLTMLEIARQLCIIYPELNKSLLYSGIILHDMGKVRELSGPIATSYTLEGNLLGHI
                     SIASDEVADAARELNVDGEEILLLRHLILSHHGKLEYGSPKLPYVKEAEILNFIDNID
                     ARMNMFEKAFKKIDKGQFTERIFGLEGRQFYKPEKLD"
     gene            complement(7822..>8489)
                     /locus_tag="PTC08_001740"
     CDS             complement(7822..>8489)
                     /locus_tag="PTC08_001740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HDK5683245.1"
                     /translation="QFESLLKQQGMTIDDYKEQRKLVSYQKELLNEKVKVSDKEIKES
                     TKKASHILIKVKQDKDDKEGLSDKDAKKKIDEIKEKLDKNPKDFDKIAKEESMDSTKD
                     KNGSLGYVIKGQMVKPFEEALFKLKEGQISDVVKTEYGYHIIRADKEDDFDKEKSKLK
                     EKIIQNKLQEDPKILTDAYKDLLDEYNVDYKDRDVKKAIEDNILNPDALKKQSSQDGQ
                     LGM"
BASE COUNT         2945 a         1341 c         1699 g         2504 t
ORIGIN      
        1 atttttattt aagaaaggta gtcataataa atggatagac aaagttttac tgaattaatt
       61 caaagcaagt tcaagatggt acgtattgag gcaggttata cacaagatac gatggctcaa
      121 acaatcggcc tatctaaaaa aacattagta caaattgaaa aagagcgtgt gttaccaaat
      181 tggacaacat gtgtatctat ttgtgcatta tttagagatt ctgaagtatt gaacggtact
      241 ttcggttgcg atcctttaga aatcgttcaa actatttcaa gaaatcaagc agcatacccg
      301 agatattcaa cagtaagtga tatttattgg gatacgcttg caagcaaaaa tggttacatc
      361 ttgcaatcaa acaaagtcag cgaactttac cgtattctag atgcggataa acaaccgatt
      421 tttgcatcac caaaattgag agaagcagaa acttacttcc aacgcaacgt gaaagaagag
      481 cttattcgtg cataatttaa aataaatgat agaatgtggg agcatcaaca aacgaaatgt
      541 tgcgtgctcc ttttttatag ggaaattgat gtttaacaca gtagtttttc ggtcataagg
      601 ttacatatgt atttgactga gaatacaaca ttacgtttgt ttgttaaaca tgagcaagaa
      661 tgaatggatc gctctattca tgtttgattc cagttgaaat ttagaggaga gatgtaaata
      721 tgcaagcgat tttagtcgta ttgtttatga tcgtgattgg cgctgtgatt ggtggtgtca
      781 cgaatatgat tgctgtcaaa atgttattcc atccatttaa agcttattac atttttggta
      841 agcgtgtacc tttcactcca ggactgattc cgaaaagaag aggagaaatt gctgaaaaaa
      901 tcggacaagt tgtggaagac catttattaa ctgagtcttt aatgagagaa aagttagaaa
      961 cgccggatat gagagcgact gtgcatcgtg ccgtttcaca acaggtggca gcattagagg
     1021 aaaatcatat gacgatgcaa tctttggtgg agcgatttga tattgatgtc gtgaaggatg
     1081 gcgaaagctt tgttgaacgt tatacgaaac aaaagttaaa cgagaaatat caattgcatc
     1141 aaacagataa aattgcagaa ctgatacctg ccaaagtgat ggctgagata gatcataaag
     1201 tgagcacatt agatactttg ttactcgaaa gagcacgtat ttatttagaa tctgacaaag
     1261 gttatgacga tattctagaa atgttagaga cgttctttgt tgaaaaagga aaaattgtgt
     1321 caatgcttca aatgtttatg actaaagaag cgatagcaga aaggattcag agagaattaa
     1381 ttcgtttgac gacacattct aaggcgcgag gtattctgtc agcacaaatt cacgcagaat
     1441 atgaaaaatt aaagcatgct acgttacaag attggattaa accagaacaa atggctgata
     1501 ttgaagcaca agtgagtgca ttggtattaa aacaaataga tctaaaacaa cgtgcgcata
     1561 tgccgcttaa atcgcttgta ccccacttat ttgaaatgtt acatgataga ggtatcgatc
     1621 gcattacaga cttgattctc gatacattag cgcaacgttt atcaaccatt ttgaaacaag
     1681 tgaatattcg cggcttaatt gaagagcaaa tcaatcgttt tgacctcgat tatattgaac
     1741 gtttaatttt tgaaattgcg aataaggaat taaaattaat tatgttgctc ggctttattt
     1801 tgggaggaat tatcggattt ttccaaggat taatagcaat ctttgtataa cactataaaa
     1861 tgtggtatcg taagctagga acgaggttga aagagacaga attcaatctt aaaatacaca
     1921 actcaaggag agattaaaat ggctgtaaat ttatatgatt acgcaaacaa attagagcaa
     1981 gctttacgtg aaagtgacga gtacaatgca attaaagatg catacgctaa agtagaggct
     2041 gatgaaaatt ctaaaaaatt atttgatgcg ttccgtgaaa cacaaatgaa cttccaacaa
     2101 aaacaaatgc aaggtgaaga aattagcgaa gaagatttac aaaaagcgca agaacaagcg
     2161 caacaaattg aaaaagacag caatatttct gagttaatga atgctgagca aaaaatgagc
     2221 caagtattcc aagaaatcaa ccaaattatc gttaaacctt tagacgaaat ttacgctgac
     2281 taataaagat aaacgattga actaacgagt ttgagatgcg atgtctcaaa ctcgtttttt
     2341 tagttaatag ctcttgtaat ggcttactca tgctttttat ctcactgatc gtcaagtcaa
     2401 ttttacggta aaaaaaatta accatttcaa taatacttaa atgagacgca ctttaattaa
     2461 cgaaaatatg ataaaataaa tgaatacgaa acatgcatac atagatgaaa tttgatgata
     2521 aaaggagaat gcttgaatgg ttaagttttt gcattgtgca gatttgcatc tcgatagtcc
     2581 atttgcatcc aagcgctatt taaatccgac aattttgaag gatgttgaaa atagtgctta
     2641 caaaagtttt gaaaacatta ttgaccttgc attgagagaa gaggtcgatt ttgtcataat
     2701 tagtggagat ttatttgacc aacacaatcg tactttaaag gcggaagtgt ttttaaaatc
     2761 tcaatttgaa cgtttgcaga aagaacaaat ttttgtctac attgtacatg ggaatcatga
     2821 tcctttatcg gatgaaatta aaacgaaatg gcctgagaat gtgactgtat tttcaaatca
     2881 ggtcgaaaca tatcaagcga ttacgaaaac gggagaaaca gtgcatcttc atggcttcag
     2941 ctatgaaaaa cgtgaaagtt acgaaaataa aatagatgct tatccgacga atgaaaatcg
     3001 taatgttgta catattggcg tattgcacgg gacttatagt aaatctgaag cttcggatcg
     3061 ttacacagag tttcgattgg aagatttaaa cgcgaaatta taccattatt gggctttggg
     3121 tcacattcat ttgagacaac aactgagtga tatgcctgaa attcattatc ctggcaatat
     3181 tcaaggccgt cattttaaag aacaaggtga aaaaggttgt ttaattgttg aaggtgatca
     3241 cgttgcgtta aagacacgct ttgtgccgac acaattcatc cgttttgaat cagcaacgtt
     3301 agagacggaa gatattagcc aacaagcgtt attcgaactg attcaagact ttaaagcacg
     3361 tgtcagacat caaggtcgtg cattttatcg attacagttg aatatacgcg gcgatgaaat
     3421 gatttcacca caagttttag aacaattgaa agtattgtcc acagaatatg aagaaaatga
     3481 acgccacttt gtcttaattg atgaatggga catccgttat attgatattc gtcaaaaatc
     3541 tattattcaa gagtttcctg cagaattact tgagcaagat gatgtgtatg agcgtgcagt
     3601 gaaagatttg tatatgaatc cgaaagcctc aaaatatttg gagagctatc aacaacatga
     3661 tcgtaaagcg ttggttgcac gtgcagaagc catcattgaa gctgagttaa aggggggcaa
     3721 ttaaccgatg aaaattaaat cagttgaaat ttatggttat ggtcaatttg tccaacgaaa
     3781 agtggaattt gatcaatatt ttactgagat ttttggacaa aatgaagcag gtaaatcgac
     3841 acttcaagcg tttatacatt cgattttatt tggcttcccg acgaaaaagg aaaacgaacc
     3901 acgtcttgaa ccacgtatgg gcaatcatta cggtggtcgt gtgacattga ttttagatga
     3961 cggtatggaa gtggatgtcg aacgtgtcaa agggagtgcc caaggggatg tcaaagttta
     4021 catgcccaat ggatcgatta aagatgaagc gtggttaaaa gcacagttaa attacatcaa
     4081 taaaaagacg tatcaagcga ttttttcttt caacgtgctt ggccttcaag acattcataa
     4141 gcatatgagt gaagtacaat tacaaaactt tttaatgcaa gcaggtgcgc tcggttctac
     4201 agaatttatc ggtatgcgtg aactgatcaa tcaaaagaag caagaacttt ataaaaagtc
     4261 aggtcaaaat cctgaaatca accgtaaaat tgaagaagtt cgcaacttgg aatatcaaat
     4321 ccgtgaagaa tcagccaaaa tggaatcgta tcaacgtttg acggaagaac atgaaaaagc
     4381 gtcacgacgt cttgacacat taaagcaaaa cctgagccaa ttaacagcac tgtttgaaga
     4441 aaagcaaaaa gaagtggctt taatcgatca agttcaagaa tggaaagggt tagaagcgga
     4501 tttaaatatt gaaccgttag agtttccaga aaaagggatt gatcgttatg aattggcgaa
     4561 agttcaagtg gatcatctcg aacgtgacat tggtttacgt gttgaaaagc aacaacaatt
     4621 gcaaaatgag aattcacagt tgtatgtgcc tgaaaaatca ctttatcaaa actttgaatc
     4681 tatcgcgaaa caagaagacc gagtgaaaca gcaagacatg gaattgaaac agaatgagcg
     4741 agaattcaat caacatgaga tggaaattaa aagtttgaag tctcatatcg gctggaaaga
     4801 ggtacatgat gatgtcgatt cgagcgaagc acaaaaaagc tttgcgagtg agacgttaaa
     4861 gcaaaagcaa gagcatctac aaacgattca acaattgaaa aagacgcaag atgactatca
     4921 aattgaaacg gtgtcttttg aggaagaatt ggaacattta agtagtcagt tggttgatga
     4981 tgaaaacttc gaaaagaaaa aagtctatga ccaacgattg ttagaattaa aagaaaagcg
     5041 caatctgttt gataagatga agacttcttt tgaacaagaa gcagaacaaa aggcacagca
     5101 acaacgtcgt gttagagggg catcattctt ccttgcgatc atctctattg cgtttgccat
     5161 ctggatgttc gtcacagaag cgatggtggc aggtattgtg ttaactgtca tggccattgt
     5221 gtttatcatt gggatgacat tattccgttc taaaccagtc ggatatgata cgcaattttc
     5281 tgaagaactt gcccaactcg aacaagaagt cgaacagtta gaagcggaat atgatttaga
     5341 ctttgattta tcgacacaat atcagttgcg tgatcaaatt gcgcaacgtc aacaacaatt
     5401 ggcaatttta aaaacaaaaa cgcaacatgc aaagacacaa tatgaagata cacagatggc
     5461 atgggcagat gcgacgagca agttacaaca attgaaagca tcacttcact tgtctgaaaa
     5521 cttgtcagat gaactgctcg tcgatgcgat acagacaatt caaatgatca aagatcatca
     5581 acaatatatt gaaaagttgc atgaagccta cttaaaatta agtgaatcat tagaatcatt
     5641 ttatactgaa gtgaatgaca aaattggttc agtatttcaa gagattgata gaaacactct
     5701 gttccatgat gtgcgagaat ggttaaaaac aacgagtcga gatatgacgc gtcatgaaca
     5761 taatacggaa caattaaact tgttagaaaa tgagctgaaa catttgaagc atcgtttaaa
     5821 tgaaaatcat caagaaattc agacattatt cggtgcaatt ggcgcgttag atgaggaaag
     5881 ttattacaaa catcacgaac gctatcaacg ctaccatgaa cgtttagcac gttttaatga
     5941 cctaacacac ttcctggata accagaacta cggctatgaa aagagttcta aattaagtga
     6001 gaaaacaaca gctcaacttg atgaagaata tcaaaagttg tctgaacaaa ttgatactta
     6061 caatgagcgc tttttggaat cacaaagcga agtgagcgac ttattagcgc aaatgaacca
     6121 tatggaaacg gatgatactt tgagacattt acgccatcaa tatcaacttt taagaaatca
     6181 attgaatgaa agtgctgaag attgggcggc gttaagctat ctcgaagcat tagtagatga
     6241 acatattaaa caaattaaag ataaacgatt gccgcaagtt gtaaatattg caacagatat
     6301 ttataatgat ttaacgagtg gtcaatatgt acaagtaact tatgcgaatg agcaagtgat
     6361 ggtgcgtcac caagatggcc aaatgtacca tcccattgaa ttaagccagt cgacaaaaga
     6421 gttgctttac attgcactcc gcttaagcct gattcataca ttaaagccgt actattcgtt
     6481 accgattatt atcgatgacg cttttgtaca ctttgatgct gaacgcagag cgcaaatgat
     6541 gaaatattta aggggcatgt ctgaagagta tcaaattctt tactttacat gttcgcgtga
     6601 taccaatatt ccagcaaaac agcttgtcac gctaaataag atagataaat agaatgggaa
     6661 ggcgttaaaa atgagaaata ttgaaaagct acaacctgga gacacggtgg atcacttttt
     6721 tctcatccat cgtgcgactc aaggcgtaac tgcgcaaggt aaagattata tgacgcttca
     6781 cttacaagat aaaagtggag aagtagaagc gaaagtttgg accattacaa aagaaggtat
     6841 gaaccaattg aagcctgaac gtattgtgca cattaaaggc gatatgatca attaccgtgg
     6901 tcgcaaacaa atgaaagtga atcaatttcg agttgcgact gaagaagacg ggttacgtac
     6961 acaagatttt atcgatgggg caccgatgtc tcctgaagaa atcaaggatg cgatgcaaga
     7021 ttacattttc gaaattgaca atgcaccgct acaacgtgta acgcgttatt tattgaataa
     7081 acatgaagag agttatttcg tgtatccagc cgcaagtaca catcaccaca actttgtcag
     7141 tggtttaagt tatcacgtat tgacaatgtt agaaattgct cgtcaattat gtatcattta
     7201 tccagaactg aacaaaagtt tattgtacag cggtattatt ttacatgaca tgggtaaggt
     7261 gagagaactg tctggtccga ttgcgacatc atacacattg gaagggaatt tactcggtca
     7321 tatttcaatc gcgagtgatg aagtggcaga tgcagcgcgt gagttgaatg tagatggaga
     7381 agagattttg ttactccgtc atctcatttt gtcacatcat ggtaaattgg aatatggctc
     7441 accgaaatta ccttatgtga aagaagcgga aattttaaac tttattgata acattgatgc
     7501 acgtatgaat atgtttgaaa aagcgtttaa gaagattgat aaaggtcaat ttacagagcg
     7561 cattttcggt ttagaaggac gtcaatttta taagcctgaa aagttggatt aatcaatgaa
     7621 tgttttgaaa catttatgta tggtgtttca ataacattgc actcgattct cgtttgattc
     7681 gttgtttttc caaagtaaaa tcatgtgata aagcgatttt cgggtgaaag taatgcaagt
     7741 aagtgtaaag ggcatcaaaa aggtgcggga actgaaagag ttgtcccgca cctttccttt
     7801 tttgacattt gtttctcgca attacatgcc tagttgaccg tcttgtgatg attgtttttt
     7861 caacgcatct ggatttaaaa tattatcctc gatggctttc ttcacatcac gatctttata
     7921 atcaacgtta tattcgtcaa gtaaatcttt ataagcatct gttaagattt tagggtcttc
     7981 ttgtaatttg ttttgaataa ttttttcttt tagtttagat ttctctttat caaaatcatc
     8041 ttctttatct gcacgaatga tatggtaacc atattccgtt ttaacgacat ctgagatttg
     8101 gccttctttc aatttgaaca gtgcttcttc aaacggttta accatttgtc ctttaatgac
     8161 ataacctaag ctaccatttt tatcttttgt tgaatccatt gactcttctt ttgcgatttt
     8221 gtcgaagtct ttaggatttt tatcgagttt ctctttaatt tcatcaattt tcttcttagc
     8281 atctttgtca gataagcctt ctttatcgtc tttatcttgt ttcactttaa ttaaaatatg
     8341 agaggctttt ttcgtacttt ctttaatctc tttatctgaa actttaactt tttcatttaa
     8401 taactctttt tggtaactca ccaatttacg ttgttcttta tagtcgtcaa tggtcatgcc
     8461 ttgttgtttt aataaacttt caaattgtt
//
LOCUS       DANHOL010000104         8478 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.105, whole genome shotgun sequence.
ACCESSION   DANHOL010000104 DANHOL010000000
VERSION     DANHOL010000104.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 8478)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8478)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8478
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.105"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            75..1190
                     /locus_tag="PTC08_001741"
     CDS             75..1190
                     /locus_tag="PTC08_001741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine dehydrogenase"
                     /protein_id="HDK5683246.1"
                     /translation="MKIGIVKELKPGEGRVGCTPENAKILKDQGHEVYVEHNAGIGSG
                     FTNEAYENAGAILVSHEKCWEADLIIKVKEPHESEFQYFKKGQVIWGFQHLASSKKTV
                     EMMQQAGVTAIGGETIEQDGKAILLEPMSAIAGRRSMLMGAYYLEAQHQGEGILISGI
                     DAISGIPSGKVVIFGGGSAGVNAATIALGLQAEVVIIELKDERIAWLESHFKNDNVTV
                     VKSNEANLAREIQTADVFISTILIPGSKPPKLVTKDMVRSMKKGSVLADIAIDQGGTV
                     EGIRPTTISDPIYVEDGVIHYAVPNQPGAVPRTSTMVLAAGNIDFLSEISNKGIERAI
                     QDNPVLASGVNIYQGHITNQGLAQSHDMPYEKLADLI"
     gene            1227..2267
                     /gene="tdcB"
                     /locus_tag="PTC08_001742"
     CDS             1227..2267
                     /gene="tdcB"
                     /locus_tag="PTC08_001742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016425924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional threonine ammonia-lyase/L-serine
                     ammonia-lyase TdcB"
                     /protein_id="HDK5683247.1"
                     /translation="MATNAVMIQTEKYCNIHDIKEAKMKIQDYVRETPLIKSMFLSNN
                     ITGGNVYLKLENMQYTGSFKFRGALNKILHLTDEQKAKGIITASAGNHAQGLALTGQL
                     LGIDATVVMPEEAPISKQEATRGYGAEVILKGETFNDSRLYMEQLAAETGKTIVHPYD
                     DVEVMAGQGTIGLEILDQIWDIDTVVVPVGGGGLIAGLATALKSFNPSIHIIGVQSEN
                     VHGMAASIKEGQITSQFTAHTIADGTEVTIPGNKTYAVVEKLVDEFVLVSEDEIANAM
                     RHLMQRTKIITEGAGALPTAALLSGKIDPRWIKGKNIVALVSGGNVDLTRVSHIIDDL
                     LKPADTSEGVVG"
     gene            2300..3622
                     /locus_tag="PTC08_001743"
     CDS             2300..3622
                     /locus_tag="PTC08_001743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HDK5683248.1"
                     /translation="MSTNTSLKKNIGFFASLSLVMGSVIGAGVFFKASSVTEVTGSTS
                     MALFVWLLGGIMTICAGLTGAELAAAIPETGGLTKYIEYTYGDFWGFLSGWAQAFIYF
                     PANIAALAIIFGTQIINLFHLSTTLLLPIAILSAVSILLINFLGSKAGGTLQSITLVI
                     KLIPIALIVIIGFFHSSDVSFSLFPVVNGTNSSWFEAIGAGLLATMFAYDGWIHVGNI
                     AGEMKNPKKDLPGAITLGIGLVMVVYLLINATFLMTLPIHQIEGNLNAASEASSILFG
                     AGGGKLVTIGILISVYGTMNGYTMTGMRIPYAMAERNQLPLKRLFLDLLPSRTPWLGG
                     MIQIVIAVIMMLLGAFDTITNMLIFVIWTFYCMAFLAVFLLRKREPELHRPYKVPLYP
                     VIPMIALLAGTFVLLNTLLTQPLLAITGIGVTMLGIPIYYYQKKTLKI"
     gene            3846..5894
                     /locus_tag="PTC08_001744"
     CDS             3846..5894
                     /locus_tag="PTC08_001744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000069452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper-translocating P-type ATPase"
                     /protein_id="HDK5683249.1"
                     /translation="MENNQEHHHHQHMHESHHPHSHHIHHDDHAHHHHGNFKMKFFVS
                     LIFAIPIIIFSPMMGVQLPFQFTFPGSDWMVLILATILFIYGGQPFLVGAKGEIASKK
                     PGMMTLVTLGISVAYIYSLYAFYLNHFSDATGHTMDFFWELATLILIMLLGHWVEMNA
                     VGSAGDALKKMAALLPNKVIKVTNNQREEVKISDIALNDIVEVKAGESIPTDGMIVRG
                     ETAIDESLVTGESKKVQKKPNDQVIGGSINGFGTIQVKVTAVGEASYLSQVMDIIKQA
                     QNDKSRAELLSDKVAGYLFYFAISVGMIAFIIWMLIDNHIDFALERLVTVLVIACPHA
                     LGLAIPLVTARSTSIGAHHGLMIKNRAAIETAQHIDYVMMDKTGTLTEGHFSVNHYES
                     FKAGVSDEIVLSLFASLESQSNHPLATSIVDFAKNKNISYVQSQDVRNIPGVGLEGTI
                     NGQAYKITNVSYLEQNGFDYDQALFTKLAQQGNSISYLIDEQQVIGIIAQGDQIKDSS
                     QQMVADLLAKGITPVMLTGDNQEVAETVAKALGINDVHAQLMPEDKESIIKAYQSKGK
                     KVMMVGDGINDAPSLIRSDIGIAIGAGTDVAVDSGDVILVKSDPSDIIHFFTLSKRTM
                     RKMVQNLWWGAGYNIVAVPLAAGILASIGLILSPAVGAILMSLSTVIVAINAFTLKLE
                     "
     gene            6077..6649
                     /locus_tag="PTC08_001745"
     CDS             6077..6649
                     /locus_tag="PTC08_001745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDK5683250.1"
                     /translation="MDVGNQIRIYRKERQLSQMALAEKIDVSTQTISNWENERTYPDL
                     YHLIVLSSLFNVSLDQLVKGDVVEMKNIIDHYNMDRYGKLMLAFMLIAVISVGPVLKF
                     SDGWYGLFIPFIFWAFSMYYAIKIERLKKKYDVKTYKEIVDYMEYGAKTYNDTREKKK
                     LLIEETLIVVVFVAVSVVLMLGSLFLFNLF"
     gene            6915..7235
                     /locus_tag="PTC08_001746"
     CDS             6915..7235
                     /locus_tag="PTC08_001746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020220452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2975 domain-containing protein"
                     /protein_id="HDK5683251.1"
                     /translation="MLFLLQLIFLCTIIILTIKLLGNIYGHFNYSEGNHTLIVVIAML
                     LFMYGVMPNFYHLLNVEVKYKEVLNSLDMGSLLIIVIGFVILALATIYEKSQKIKEEN
                     DLTI"
     gene            7245..7457
                     /locus_tag="PTC08_001747"
     CDS             7245..7457
                     /locus_tag="PTC08_001747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016911130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDK5683252.1"
                     /translation="MIKIKLDEVLKERNVSLTELSNAVNVTIANLSILKTGKAKAVRF
                     STLEAICNYLDCQPGDIIVNQKDDVG"
     gene            7688..>8478
                     /locus_tag="PTC08_001748"
     CDS             7688..>8478
                     /locus_tag="PTC08_001748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_075773664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="B domain-containing protein"
                     /protein_id="HDK5683253.1"
                     /translation="MENKNFFSIRKLSIGVGSCLIASSLLVNTPSFAEETDNANINDA
                     QQNAFYEILHLSNLTEEQQNGFIQSLKDDPSVSKEILAEAKKLNDTQAKPDYSEAQQN
                     AFYEILHLSNLTEEQQNGFIQSLKDDPSVSKEILAEAKKLNDSQAPKVDEAKKTDKAE
                     AKADDKAKGEEAKKSENKKDSKADKAKSKNATHVVKPGETLDNIAKDHHTTVDKIAKD
                     NKIKDKNVIKLGQKLVVDKQKVTQGKQEAVAKNEVKALPNTGEND"
BASE COUNT         2714 a         1344 c         1816 g         2604 t
ORIGIN      
        1 tttaattttt aaataagatt gatttgatat caaaattaaa agcaatttca atcacctaat
       61 gaggagtgtt tgttatgaaa attggtattg ttaaagaatt aaagccgggt gaaggacgcg
      121 taggttgtac acctgagaat gctaaaattc ttaaagatca aggacatgaa gtctacgtag
      181 aacacaatgc aggtataggc tctggattta cgaatgaagc ctatgaaaat gcaggtgcaa
      241 tacttgtttc acatgaaaag tgttgggaag cggatttaat tattaaagtg aaagagcctc
      301 acgaaagcga attccaatat ttcaaaaaag gccaagtgat ttggggcttc caacatttgg
      361 cgtcatctaa aaagacggtt gagatgatgc agcaagcggg tgtgacagcg attggtggcg
      421 aaacaatcga acaagatggg aaagccattt tattagagcc gatgagcgca attgctgggc
      481 gccgttcgat gttaatgggt gcgtattact tggaggcaca acatcaaggt gaagggattt
      541 tgatttctgg tattgatgcg atttcgggga ttccgtctgg taaagtcgtc attttcggtg
      601 gaggttctgc gggtgtcaat gcggcgacga ttgcgttagg tttacaagca gaagtcgtca
      661 tcatcgaatt aaaagatgaa cgtattgctt ggctcgaatc gcattttaaa aatgacaatg
      721 tgactgttgt gaaatcgaac gaagccaatt tagcacgaga aatccaaaca gcagatgtgt
      781 ttatttcaac gattctcatt ccaggatcta aaccacctaa attggtcact aaagatatgg
      841 tacgtagcat gaaaaaaggt tcagtgcttg cagatattgc gattgatcaa ggcggaactg
      901 ttgaaggtat tcgtccaaca acgattagtg atccgattta cgttgaagac ggcgtcatcc
      961 attatgcggt gccgaatcaa cccggtgctg taccacgcac gtctacaatg gtcttggctg
     1021 cgggtaacat tgacttttta tctgaaatta gcaacaaagg tatcgaacgc gcaattcaag
     1081 ataatccagt cttagcctct ggtgtgaata tttatcaagg acacattaca aatcaaggtt
     1141 tggcacaatc ccatgatatg ccttatgaaa agttagcaga cttaatctag ttcgtacaat
     1201 atcaatttga aaagaggatg atcgtgatgg caacaaatgc tgtaatgata caaactgaaa
     1261 aatattgtaa tatccatgac attaaagaag ctaaaatgaa aattcaagat tatgtacggg
     1321 aaacaccgct tattaaatca atgtttttga gtaacaatat tacaggtggc aatgtttatt
     1381 taaaacttga gaacatgcaa tacaccggat ctttcaaatt tagaggtgca cttaataaaa
     1441 ttttacactt aacagatgaa caaaaagcaa aagggattat cactgcttca gcgggtaatc
     1501 atgcgcaagg tctcgcattg actggacaac tgctcggtat tgatgcaaca gtcgtcatgc
     1561 ctgaagaagc accgatttct aaacaagaag cgacacgtgg ttatggtgcg gaggtcatcc
     1621 ttaaaggaga aacgtttaat gactctcgtc tgtatatgga acaactggcc gcggaaacag
     1681 gtaaaacgat tgtacaccct tatgatgatg ttgaggtgat ggccggtcaa ggaacgattg
     1741 gcttagaaat attagatcaa atctgggaca ttgatacagt agtagtacct gttggtggtg
     1801 gtggtttgat tgctggctta gcaacagctt taaaatcatt taatccatct attcatatta
     1861 tcggtgtgca atctgaaaat gttcacggta tggcagcatc gattaaagaa ggccaaatta
     1921 cgtcacaatt tacagcacat accattgcag atggcacgga agtcaccatt cctggtaata
     1981 aaacatatgc tgttgttgaa aaattagtcg atgaatttgt attagtttca gaagatgaaa
     2041 ttgcaaatgc catgcgtcat ttaatgcaac ggactaaaat cattactgaa ggtgcaggcg
     2101 cattaccaac tgctgcacta ttaagtggta aaatcgaccc acgttggatt aaaggaaaaa
     2161 atattgtcgc tttagtatca ggggggaatg ttgacctcac acgtgtttca catattattg
     2221 atgatttatt gaaacccgct gatacgagtg aaggtgtggt cggttagccc atctgagaaa
     2281 tgaaatggag gcaacggcaa tgagtacaaa tacatctcta aagaaaaaca tcggcttttt
     2341 tgcatcgctt tcacttgtta tgggatcggt tattggcgca ggtgtcttct tcaaagcttc
     2401 aagtgtaacg gaagtgaccg gttcaacgag tatggcactt tttgtttggc tgcttggcgg
     2461 tatcatgacc atttgtgccg gtttgaccgg tgctgaactt gctgcagcca ttcctgaaac
     2521 tggcggactc actaagtata tcgaatacac ttatggagac ttttggggat ttttatcagg
     2581 ctgggcacaa gcgtttattt actttccagc taacattgca gctttagcca ttatttttgg
     2641 aacgcaaatc attaatttat ttcatttatc gacaacattg ttacttccca ttgcaatcct
     2701 gagtgccgtt tcgatattac tgattaactt tttaggttct aaagcaggcg gaactttaca
     2761 atccattacg cttgtgatta agttaatccc tattgcactc attgtcatta tcggcttctt
     2821 tcattcgagt gacgtatcat tttctctctt tcccgttgtg aatggtacaa attcgagttg
     2881 gtttgaagcg attggtgcag gtcttcttgc gacaatgttt gcgtatgacg gttggattca
     2941 tgtcggtaat attgccgggg aaatgaaaaa ccctaaaaaa gacttaccag gcgccattac
     3001 gctcggtatc ggtttggtca tggttgttta cttactgatt aatgcgacgt ttttaatgac
     3061 actgccgatt caccaaattg aaggtaactt gaacgccgca agcgaagcat cttcaatttt
     3121 atttggtgca ggcggtggga aattagtcac gattggtatt ttaatatctg tatatggtac
     3181 catgaacggc tatacaatga ctggtatgcg tatcccttat gccatggcag aacgtaatca
     3241 actgccactc aagcgcttat ttttagactt attgccttca cggacaccat ggctcggtgg
     3301 catgattcaa attgtcatcg cagtgatcat gatgctatta ggtgcttttg acacgattac
     3361 gaatatgttg atatttgtca tatggacatt ttattgtatg gctttcttag cggtatttct
     3421 tcttagaaaa agggagccag aattacaccg tccatataaa gtcccgttgt atcccgtcat
     3481 acctatgatt gcattactag caggcacgtt tgtcttgctg aatacattat tgacacagcc
     3541 cctccttgca atcacgggta tcggggtcac aatgttaggt attccgattt attattatca
     3601 aaagaaaaca ttaaaaattt aatgaaacgc ctactcataa gattttgaca ctgattatca
     3661 ttgatccgag actttcgttg ttcatgacga aaatgtctcg gatttttctt taatattgtg
     3721 acggttcaat attttgttgc tgaacagtca cgtcatataa tctttacgtt tcataccccg
     3781 tataggtata tgttatgcta aagttatatt gaattatagc gtgataaaca gaggaggcgt
     3841 tatctttgga aaataatcaa gagcaccatc atcaccaaca tatgcatgaa agtcaccacc
     3901 ctcatagtca tcatatacat cacgatgacc atgcacatca ccatcacggg aattttaaaa
     3961 tgaagttttt tgtgtcattg atttttgcga taccgattat cattttttct ccaatgatgg
     4021 gcgtacaatt gccatttcaa ttcacatttc caggttctga ctggatggtg ttaatccttg
     4081 cgaccatttt atttatttac ggagggcaac cgtttttggt tggcgcgaaa ggtgaaatcg
     4141 cttcgaaaaa accgggcatg atgacgctcg ttactttagg tatttcagtt gcttacattt
     4201 acagtctata tgctttttat ttgaatcatt tcagtgatgc aacaggtcat acgatggatt
     4261 ttttctggga actcgcgaca ctaattttaa ttatgttgtt gggtcattgg gttgaaatga
     4321 acgcggttgg aagtgctggc gatgcattga agaaaatggc agcactgtta ccgaataagg
     4381 tgattaaagt tacgaataat caacgtgagg aagttaaaat atcggatatt gcgttaaatg
     4441 atatcgttga agtgaaagcg ggagaaagta ttccgacaga tggtatgatt gttcgaggtg
     4501 agactgcgat agacgaatcg ttagtgaccg gggagtctaa aaaagttcag aaaaagccaa
     4561 atgatcaagt catcggtggt tctatcaatg ggtttggtac gatacaagtg aaggtgactg
     4621 ctgtaggaga agcaagttac ctttcgcaag tgatggatat tataaaacaa gctcaaaatg
     4681 acaagtctcg agcagagtta ttatctgata aagtggcggg ttatctgttc tattttgcca
     4741 taagtgtcgg catgattgca tttattatat ggatgttgat agacaatcat attgatttcg
     4801 cattagaacg actcgttacg gtgctagtca ttgcttgtcc acatgcgcta gggttggcca
     4861 ttcctttagt gactgcacgt tcgacatcaa taggagcgca tcatggtttg atgattaaaa
     4921 atagagcagc gatagaaacg gcacaacata ttgattatgt catgatggat aagacaggta
     4981 cactcactga aggtcacttc tcagtcaatc attatgagag ttttaaagcg ggtgtgagtg
     5041 atgagatagt attaagtttg tttgcttcat tagaaagtca atcgaatcat ccattagcga
     5101 cgagtattgt ggatttcgct aaaaataaaa atatctcgta tgtccaatct caagacgttc
     5161 gaaatatccc gggtgtcgga ttagaaggga caattaacgg tcaagcttat aaaatcacca
     5221 atgtttccta ccttgaacaa aatgggtttg attatgatca agcgttgttc acgaaattag
     5281 cacagcaagg caattccatt agctatttaa tcgatgaaca acaagtcata ggtattatcg
     5341 cgcaaggtga tcaaattaaa gacagttcgc aacaaatggt ggcagatttg ctcgcgaaag
     5401 gtatcacacc tgtcatgctc acgggtgata atcaagaagt ggcggaaacg gtagcgaaag
     5461 cgttaggtat taatgatgtc catgcacaac tcatgccaga agataaggaa agcattatca
     5521 aagcgtatca aagtaaaggt aagaaagtga tgatggtggg tgacggtatt aatgatgcgc
     5581 cgagtttgat cagatcagac atcggtatcg ccattggagc aggtacagat gttgcagtag
     5641 attctggtga tgttatcctt gttaagagtg atccgagtga catcattcat ttcttcacac
     5701 tttcaaaacg gacaatgaga aaaatggttc aaaacttatg gtggggtgca gggtataata
     5761 tcgttgcagt gccattagca gctggaattt tagcatctat tggcttgata ttatcgccgg
     5821 ctgttggtgc gattttaatg tcgctcagta ctgttatcgt tgctattaat gcttttacat
     5881 tgaagttgga atagggtgaa cgtgtatgcc atctactttg ggttgagtag gtggcatttt
     5941 ttaggaaaag tcacaaaact taagagtata acccgggaaa tataacgata aaaaagttta
     6001 tagttacatt ataaaaagat ttgatagaat agcatttaat tacaggttat cgtcagtgat
     6061 gaaggagctg ttggatatgg atgtcggcaa tcaaattagg atttatagaa aagaaaggca
     6121 attatctcag atggcgttag cagagaaaat tgatgtatcg acccaaacga tttctaactg
     6181 ggagaatgag agaacctatc ctgacttgta tcatttgatt gttctcagtt ctttattcaa
     6241 cgtttctcta gaccaacttg taaaaggaga tgtagtagaa atgaagaaca tcatcgatca
     6301 ctataatatg gacagatatg gtaaattgat gcttgctttt atgcttattg cggtgatttc
     6361 agtcggacca gttttgaaat tcagcgacgg atggtacggt ttatttattc catttatatt
     6421 ttgggcgttt tcaatgtatt atgccattaa gattgaacgt ttgaagaaaa agtatgatgt
     6481 caaaacgtat aaagagatag tggattacat ggagtatggc gcaaagactt ataacgatac
     6541 aagagaaaaa aagaaattgt tgatagagga aacattaatt gttgtagtat tcgtcgcagt
     6601 gtcggttgtt ttgatgttag gcagtctgtt tttgtttaat ttgttttaat agaaggtgtg
     6661 aatgatatgg aagagatttt atcgtaagat gctataattt attgatattc gataaattaa
     6721 atggtgtatt tttatcgaat atcaataagg ggtggataga gatgaatgtc aaaatgatgt
     6781 tgcgattcac ataatttatg ttaagtttct tgttgttact ctctttaaca aatgccataa
     6841 aatcattaat tgattataat aacttatttg acacatcaat atttgaagcg gataatgcct
     6901 ataaagttta tgcaatgctc tttctattac aattaatatt tttatgcact atcatcatcc
     6961 ttactattaa acttctaggc aatatatatg gacattttaa ttattcagaa ggtaatcata
     7021 cattgattgt tgtgattgcg atgttactgt ttatgtatgg tgtgatgcct aatttctatc
     7081 acttacttaa tgttgaggta aaatacaagg aagtcttaaa tagtttggat atggggagtt
     7141 tgcttattat agtcataggt tttgtaattt tagctttagc cacaatatat gaaaagtctc
     7201 aaaagataaa agaagaaaat gatctcacga tatagggaga tgctatgatt aaaataaaat
     7261 tagatgaagt attgaaagag agaaatgttt cgcttactga attatcaaat gctgttaatg
     7321 taacgattgc aaatttatcc attttaaaaa caggaaaggc taaggctgta cgatttagta
     7381 ctttagaagc gatatgtaat tatcttgatt gccaacctgg ggacatcata gttaatcaaa
     7441 aagatgatgt tggataatac gaccaaaatt tcatgaaatt cgtaaattag aaaatgtttt
     7501 tgcatcataa atacaggagg actagggtaa tgttcctagt ccttttctta tgggtcaatc
     7561 attgcggtgt gcatgtaaat aaatatttaa atctatatcg tgttttgtcc tttactttct
     7621 atactttata ttatattatt agcttaaatg ttacataaca tattttattt gaagggtgtt
     7681 ggacttaatg gaaaacaaaa acttttttag tattcgtaaa ctatctattg gtgtaggttc
     7741 ttgcttaatc gcgagttctt tacttgtaaa cacgccaagt tttgctgaag aaacagataa
     7801 tgcgaacatt aatgacgcac aacaaaacgc cttttatgaa attttacatt tgtcaaactt
     7861 aactgaagag caacaaaatg ggttcatcca aagccttaaa gatgatccaa gtgtaagtaa
     7921 agaaatttta gcagaagcta agaagttaaa tgacactcaa gctaaacctg attacagtga
     7981 agcacaacaa aatgcatttt atgaaatttt acatttgtca aacttaactg aagagcaaca
     8041 aaatgggttc atccaaagcc ttaaagatga tccaagtgta agtaaagaaa ttttagcaga
     8101 agctaagaag ttaaatgata gtcaagcacc taaagttgat gaagctaaaa aaactgacaa
     8161 agctgaagcg aaagcagatg ataaagctaa aggtgaagaa gccaaaaaat ctgaaaacaa
     8221 aaaagatagc aaagcagata aggcaaaatc gaaaaacgct acacatgttg ttaaacctgg
     8281 tgaaacttta gataatattg ctaaagatca tcatacaact gttgataaaa ttgctaaaga
     8341 taacaaaata aaagataaaa atgtgattaa actaggtcaa aaacttgttg ttgataaaca
     8401 aaaagtaact caaggaaaac aagaagctgt agcgaaaaat gaagtgaagg ctttacctaa
     8461 tactggtgaa aatgatga
//
LOCUS       DANHOL010000105         8477 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.106, whole genome shotgun sequence.
ACCESSION   DANHOL010000105 DANHOL010000000
VERSION     DANHOL010000105.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 8477)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8477)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8477
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.106"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            851..1528
                     /locus_tag="PTC08_001749"
     CDS             851..1528
                     /locus_tag="PTC08_001749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HDK5683254.1"
                     /translation="MSVTCLIVDDDPEILNYVATHLQHKGYQAVTVASGEAALEYLEK
                     HTIDIAIVDVMMDGMDGFELCETLKYDYEYPVIMLTARDALSDKERAFLGGTDDYVTK
                     PFEVAELIFRIQAVLRRYQIATETLLTLGNLTIDQTQLEVKVETKGMILPHKEFELLS
                     LLVAYPKQVFPREQLIEKIWGIDYEGDERTVDVHIKRLRARLKKLGANVQIETVRGIG
                     YKVTQDA"
     gene            1521..2912
                     /locus_tag="PTC08_001750"
     CDS             1521..2912
                     /locus_tag="PTC08_001750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HDK5683255.1"
                     /translation="MLKSLYSRFALYTFTVMLISSLLSFEIANIYYHFQLKEKNDAKI
                     MATLKRAEAYKDVQTSQNLDRYLALLGDLNYQVVAYDKQGHATYYGEPFRKQNLTISD
                     IQRVQSGKDYHGIGNRPFNPVITGFFDNETRNTVGTHFTTPNGNVAVFIRPDIGHAFG
                     EFRIFLLVLLVLLVLFSIALVTWSTYALVKPVKQLKYATERLMAGDFATPIAVTRRDE
                     LGVLQQHFDTMRLELKQLDDMRQHFVQNVSHEIKTPLTHIHHLLTQLQQEHTTPQQAR
                     YIERIYDETHRLSQLVRQLLLLSELDNDTHLQFDDTFLANACILDILKHENYAIDQKN
                     QVLLYDLEAVTIRGNSRLIAQAFENVIRNAIKYTEAFGTIEIDLTAENDQMILKVRDD
                     GPGMNDAVKQRIFERFYKSSSHTDSNGLGLAISKSIIERHGGRIEVESKIDHGTTFTI
                     FLPRIDASQPAQS"
     gene            complement(3264..4769)
                     /gene="mqo"
                     /locus_tag="PTC08_001751"
     CDS             complement(3264..4769)
                     /gene="mqo"
                     /locus_tag="PTC08_001751"
                     /EC_number="1.1.5.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase (quinone)"
                     /protein_id="HDK5683256.1"
                     /translation="MKNLHNKTDVVLIGGGIMSATLGTLLKELEPEWDINVFERLDKC
                     AQESSNVWNNAGTGHSALCELNYTSEKEDGSVDITKAIKINEQYQVSKQFWSYLVKNG
                     QLKQPEGFIRTVPHMSFVTGEKNVNFLKARVKALRENVLFQGMDITDNEETLKKWVPL
                     MMEGRQQDGEPIAATRDESGTDVNFGALTHKMLSNLEAKGGSLYYEHEVLDLKQHRDG
                     MWTVKIKDLKENRVFTVVSKFVFIGAGGASLPLLQKTGLPESKRIGGFPVSGMFLVCK
                     KPEITHQHKAKVYGKAEVGAPPMSVPHLDTRYIDGERALLFGPFAGFSPKFLKRGSYF
                     DLIKSVKPNNVATMLAAGAKEMGLTKYLIQQVLLSNKERMNDLRKFVPTAKDEDWQVV
                     VAGQRVQVIKDTDDKGKGTLQFGTEVITSQDGTLAALLGASPGASTAVAVMLDILQRA
                     FKDKFNQWEPQVKEMVPSFGVRLTDDIALFKQLNHEISENLKLDESGALLS"
     gene            5196..6371
                     /locus_tag="PTC08_001752"
     CDS             5196..6371
                     /locus_tag="PTC08_001752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HDK5683257.1"
                     /translation="MKSITFLMHNIFAVGGTVKTITNLANQLVHQGHQVTIISIFKSK
                     QQPYFELDSRVTVKSLVHYQLGLRNLIPLAANRIRKFTPLLKPKYLTPYEPGFRQYSS
                     YIEKKMIRAIQNDTSDIFVGTRASHNLLIARFAKGHQLTIGMEHMNLDAHRQELKEEL
                     LTYYPHLNAITTLTEADKQRYTQYLDAPIFVVPNMIDEKRHHIMKKNQIIAAGRFEYE
                     KGFDLLIQAVYEIQEDLRDFGYTVSIFGDGSEKEALQQQINFLRLQDLVFLRPTTQHL
                     STYIAESKITCIPSRNEGFGMTILEAMNQGSIVVSFDGNTGPKSLIQHSRNGFLVPHL
                     QASALAMQLLEIVEYGHSKYLNPIIQSGYQTVEQYQPESIYNQFKTAMDHVIATQSS"
     gene            complement(6839..8443)
                     /locus_tag="PTC08_001753"
     CDS             complement(6839..8443)
                     /locus_tag="PTC08_001753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate permease"
                     /protein_id="HDK5683258.1"
                     /translation="MLVEHFDPFHNLAISALVASIPIILFLLCLTVFKMKGIYAAITT
                     LVVTLVIALVVFKLPVGIASGGILEGFYQGILPIGFIVMMAVWLYKVTVATGQFAIVQ
                     DSITTISEDQRIQLLLIGFAFNAFLEGVAGFGVPIAICAVLLIQLGFKPLQAAMLCLV
                     GNGAAGAFGAIGLPVSVIDTLALKGDVSALDVAQATNLSLPILSVIVPFLLVFIIDGF
                     KGIKETLPAIIVTVVPFVVLQVFFNQFFGPELVDILPPLASMGALALFSKKFQPKNIF
                     RLNAGEEKMEVKHHSFKEVVFAWSPFIILTILVLIWSSKAFKGLFLEDGALSFMNVKF
                     GIPGTMNDISGHPIMLTFNILNQTGTALLIAGIITVLISSKVNFKRAGALFVEAFKEL
                     WLPILTICFILAIAKVTTYGGLTSAMGEGISKTGAAFPFLSPILGWIGVFMTGSVTNN
                     NALFAPIQASVAPQVGTSGALLVGANTAGGAIAKLISPQSIAIATAAVKQVGRESELL
                     KMTLKYSVGLLIFWCIWTFILSLILG"
BASE COUNT         2699 a         1764 c         1455 g         2559 t
ORIGIN      
        1 ttcatactca tatctccctt tcaatttcat cttggatata ctatatcgcc catttatgaa
       61 ctgaatatga acaagataca tttttatgac acactttaaa atcgttatca acaactgaaa
      121 aatgggagtg ggacatacaa ctaatcagcc gcatcactca tgggtttacg atttattatt
      181 agaggatgaa taggatacaa aaatttgatg ctattgatgc aatatgtttg ttgtacttac
      241 cctccctata atttgtggtt taagattgcc atcatgactt tcctttcgta ggtgttggcc
      301 cttcaactca ctaacgcttg attaaactgt tacatttgtt gaggcgttag tcgattttgg
      361 gagcagtaca gaaatctcat gtgtcacaaa gctttcgttg tactgctccg caaggctgac
      421 tcgacttctc aaaagcatgc gccttgagaa gtcagacagc tactgcgata aatagtaacc
      481 actattaaag tgaagcactc actgtaagca gtatgtacac attctctcgc gcgtctcagc
      541 cttctggtca atcttccatc aaacagaaga aactgagttc aagtgtatga aatcaaaaaa
      601 caatagcatc attttagtat tttatttccc ttcattttac ggctttttta aaatcaataa
      661 tggatcgtaa catttgaatg gatagaggtt agaaaactta atggacatca tatttcgcga
      721 catggctcac acttttcatt tccaattgaa actttgaata aaaacattta tgatagcttc
      781 aacagcttca caacgttata tacttatata ccgtaaaggc tgaaattgta cctcaaggag
      841 gacggtcaat gtgtcagtca catgtttaat tgttgatgat gatccggaaa ttttgaatta
      901 tgtcgcaaca catttgcagc ataaaggcta tcaagctgtc actgtcgcaa gtggtgaagc
      961 ggctcttgaa taccttgaaa agcatacaat tgatatcgct atcgtggacg tcatgatgga
     1021 tgggatggac ggtttcgaac tgtgcgaaac gttaaagtat gactatgaat atcccgtcat
     1081 tatgctgact gctcgggatg ctctgagcga taaagagcgc gcttttttag ggggaacgga
     1141 tgattatgtt accaaaccat ttgaagtcgc tgaactcatc ttccgtattc aggccgtgct
     1201 cagacgttat caaattgcga ctgaaacgct tttgacacta ggtaacttga cgattgacca
     1261 aacacagctc gaagtaaaag tggagacgaa aggtatgatt ttaccgcata aagaattcga
     1321 attgttaagt ttgctcgtcg cttatccgaa gcaagtcttt ccgcgtgaac aattaataga
     1381 aaaaatttgg ggtatcgatt atgaaggaga tgaacgcacc gtggacgtcc atattaaacg
     1441 tttaagagca cgtctaaaaa aactcggggc caatgtccag attgaaacag tacgcggcat
     1501 cggttataag gtgacacaag atgcttaaat cattgtactc tcgtttcgca ctgtatacct
     1561 tcactgtgat gctcattagt tcgttactca gctttgagat tgctaatatt tactaccatt
     1621 ttcaattaaa agagaaaaat gacgccaaaa tcatggctac tttaaagcgt gccgaagcgt
     1681 ataaagatgt acaaactagc caaaacttag accgttattt agcgttatta ggagatttga
     1741 attatcaagt cgtcgcctat gataaacaag gtcatgcaac atattatggt gaaccgtttc
     1801 ggaaacaaaa tttaaccata tccgatattc aacgggtgca gtcaggaaaa gattatcatg
     1861 gtatcggaaa cagacctttc aatccagtga ttacaggctt ttttgataat gaaacacgta
     1921 atacagtcgg tacacatttc acaactccca atggcaacgt cgcagttttt ataagacctg
     1981 acattggcca tgcttttggt gaatttcgta tctttttact cgtgctactg gttttacttg
     2041 tcctattctc cattgcactc gtcacatggt ccacatacgc attagtgaag ccagtcaaac
     2101 agttaaaata tgccactgaa cggttaatgg ctggcgattt cgcaacacct attgccgtca
     2161 cacgacgcga cgaactaggt gtcctgcaac aacatttcga cacgatgcga ctcgaattaa
     2221 aacaactcga tgatatgaga caacactttg ttcaaaacgt ctcgcacgaa attaaaacac
     2281 ctttaacaca tattcatcat ttattgacgc aattgcaaca agaacatacg acaccccagc
     2341 aagcacgcta tattgaacgc atttatgatg aaacacaccg cttgagccaa ctcgtgcgtc
     2401 aactgttgtt attgtcagaa ttagataatg atacacattt acaatttgat gatacttttt
     2461 tagctaacgc ttgtatttta gacattttaa agcatgaaaa ttatgccatc gaccagaaaa
     2521 atcaagtgct tctctatgat ttagaagcag tcaccattcg aggcaactcg cgtttaatcg
     2581 ctcaagcttt cgaaaatgtg attcgcaatg ctattaagta tacagaggcg ttcggtacca
     2641 ttgaaatcga tcttactgct gaaaacgatc aaatgatttt aaaagtacga gatgacggcc
     2701 ctggcatgaa tgatgcagta aaacaacgga tttttgaacg cttttataaa tcttctagcc
     2761 atacagatag caatgggctc ggactcgcga tttccaaatc tattattgag cgtcatggtg
     2821 gccgtatcga ggtagagagt aaaatcgatc atgggacgac gtttactatt ttccttccac
     2881 gtattgatgc atctcaacct gctcagtcat aatcggtgtg gcaaaaagca tttaagaaag
     2941 tgtagaatgg ttcagcataa atactttata catcacaaaa cacaagatgt atttgcgttt
     3001 tgtgatgtat aagaataagt aacgattgtc atcttcacct gctttgacag tgccgctctc
     3061 acagattgca aaaccgtaca agactcctca tcaagctgca gtcgaaagtc caccaacgct
     3121 tgatgtaact atttcatcaa gcgttggcta gttgagacgg tagcgccttg gaaaacgaag
     3181 catgattaag caatttgttg attattttat tatcgcaaaa aagcagtgaa gccatatcgc
     3241 ctcactgctt tgttatctac aaattaactt aataacgcac ccgattcatc caacttcaag
     3301 ttttccgaaa tctcatgatt caattgctta aacaacgcaa tatcatccgt caaacggaca
     3361 ccaaacgacg gtaccatctc tttcacttgt ggttcccatt ggttaaactt gtctttgaac
     3421 gcacgttgta aaatatctaa catgactgca actgctgtag atgcccctgg tgaagcacct
     3481 aacaatgccg ctaatgtacc atcttgagac gtaatgactt cagtcccaaa ttgtaatgtt
     3541 cctttccctt tatcatctgt gtctttaatc acttgaacac gttgccctgc gacaaccact
     3601 tgccaatcct catctttcgc tgttggcaca aattttctta aatcattcat tctttcttta
     3661 ttagataaca atacttgttg aattaaatat ttcgtaagac ccatttcttt agcacccgct
     3721 gctaacatcg ttgcaacatt attcggtttc acagacttaa ttaaatcaaa ataggatcct
     3781 ctttttaaga actttggtga aaaacctgca aacggtccaa ataataaagc acgttctccg
     3841 tcaatataac gcgtgtccaa atgtggtaca gacatcggtg gcgcacctac ttcagcttta
     3901 ccatatactt tcgccttatg ttgatgcgta atttctggtt ttttacatac taaaaacata
     3961 ccactgactg ggaagccacc gatacgcttc gactcgggta accctgtttt ttgaagtaac
     4021 ggtaaacttg caccgcccgc accaataaat acaaatttag aaacgactgt aaagacacga
     4081 ttttctttta agtctttaat tttaacagtc cacatgccat cacgatgttg ctttaaatcg
     4141 agtacttcat gttcgtaata taatgaaccg cctttagctt ctagattgct taacatttta
     4201 tgcgtcaatg ctccaaagtt cacatctgtt cctgattcat cacgtgtcgc agcaatcggt
     4261 tcaccgtctt gttgtcgacc ttccatcatt aaaggcaccc attttttcaa cgtttcttcg
     4321 ttatctgtaa tatccatgcc ttggaataat acattttccc gcaatgcttt cacacgtgct
     4381 tttaagaagt tcacgttttt ctcccctgta acgaaactca tatgtggtac cgtgcgaatg
     4441 aaaccctctg gttgtttaag ctgaccattt tttacaaggt atgaccaaaa ttgtttcgaa
     4501 acttgatact gttcattaat tttaatggct tttgtaatgt cgactgagcc atcttctttt
     4561 tcacttgtat agttcaactc acatagtgca gaatgtcctg tgcccgcatt attccacacg
     4621 ttagaacttt cttgtgcaca tttatctaaa cgttcgaaaa cattaatatc ccattcaggc
     4681 tctaactctt ttaataatgt tcctaatgtt gcactcatga ttccgccacc aataagtaca
     4741 acatctgtct tgttatgtaa gtttttcata acaatacaga cccccttttt cgttttaaat
     4801 cgttcacagc atcctatgtt gtcaaatcca tctgttacat tcataaagta taaaaatatt
     4861 tcgactattc caattgatta tacctgatat gaactgttat cctttgcctc agccttacat
     4921 ttcatagcga taaaaaaatc atgcgtatgt catgaaaatg ttatccgata acacaatagg
     4981 ccaataattt aattatatac cttaatcatg taagaaaaaa gcgattccgt ctaatttgtg
     5041 aaattttcat taaatgcatt tgaaagaaat tttgtaccta ttttcatttc aaacagctac
     5101 atgaaatgaa ttacatatta cattcacaat tcattaacac tccacatttc agcagtgcta
     5161 taatgaagaa aaagtaacta atcgagggat gcgtcatgaa gtctatcacg tttttaatgc
     5221 acaatatttt tgctgttggc ggtacagtta agacgattac caaccttgcc aatcaattgg
     5281 ttcaccaagg acatcaagtc acgattattt caattttcaa atcgaagcaa caaccgtatt
     5341 tcgaacttga ttcccgcgtc acagttaagt cattagttca ttatcaactt ggcttacgaa
     5401 atctcatccc actcgcagca aatcgcattc gtaagtttac accattgtta aaacccaaat
     5461 atttaacacc gtacgagccc ggttttcgtc aatattcgag ttatattgaa aaaaagatga
     5521 ttcgcgccat ccaaaatgac acgtcagata tttttgtcgg tacgcgtgcc agccacaatc
     5581 ttctcattgc acgatttgca aaaggccatc aattaactat cgggatggag catatgaact
     5641 tggatgcaca tcgccaagag ttgaaagaag agttattgac ttattatcca catctcaatg
     5701 caataacgac tttaactgaa gccgataaac agcgctatac acaatattta gatgcaccga
     5761 tttttgtcgt tccaaatatg attgatgaaa agcgccatca tattatgaag aaaaaccaaa
     5821 tcatcgcagc aggtcgtttt gaatatgaaa aaggatttga tctccttatt caagctgttt
     5881 atgaaatcca agaagatttg cgtgactttg gttatactgt atcaattttt ggagatggta
     5941 gtgagaaaga ggcattacaa caacagatta actttttacg attacaagac cttgtctttt
     6001 tacgaccaac gacacaacat ctcagcacgt atattgcaga aagtaagatt acatgtatcc
     6061 cctcacgtaa tgaaggtttc ggcatgacga ttttagaggc gatgaaccaa ggcagtattg
     6121 tcgtaagttt tgatgggaat accggtccga aatcactgat tcaacatagc cgtaacggtt
     6181 tcttagtgcc gcatcttcaa gcgtcagcac ttgccatgca gctcttagaa attgtggaat
     6241 atggacattc aaaatattta aatcctatca ttcaaagtgg ctatcaaaca gtggaacagt
     6301 atcagcctga atccatttat aatcagttta aaacagccat ggatcatgta attgcaacac
     6361 aatcatcatg actgattgaa aatgaggctt ggagaactta atgatctctc agcctcattt
     6421 ttatatgtat taagcgtaga attatttgcc attacctcgt gaatcatacg taatcaatga
     6481 cgtatgagga caaattcact gcgcattgca tccgtcaagc atttccccat accgccacaa
     6541 aaattaagta tttgatttta gaaaagagcg gcttattatg tttttccctc ttccaattag
     6601 atgtactcaa cctagattgt aagcaccatg caagactcct gaggcatcag ctgaaacgaa
     6661 aaatccaatt cgacttacac cgcatgtaca cttaaatcaa gccgaatttt gttgaagttt
     6721 cagcccttca gaaagcgtaa cacagttcaa gcaaggcaag aatttttcag ctatctaaaa
     6781 aagcacgcaa aaaggactga catagccaac aaaatcagcc atatcagtcc ttcaatcatt
     6841 aacctaaaat taacgataaa ataaacgtcc aaatacacca gaatatcaat aaaccgacac
     6901 tatattttaa agtcatcttc aacaactctg actctctacc tacttgtttt acggctgcag
     6961 tcgcaatcgc aatagattgt ggagaaatca atttcgcaat cgcaccccct gcagtgttag
     7021 cgccaacaag taatgcacca cttgtaccaa cttgaggggc aactgacgct tgaattggtg
     7081 cgaataatgc gttgttgttc gtaactgaac ctgtcataaa cacgccaatc caaccgagaa
     7141 ttggtgataa gaatgggaag gctgctccag tttttgaaat accttcaccc atcgcgcttg
     7201 ttaaaccacc atatgttgtg actttcgcaa tggctaagat gaaacaaatt gttaaaatcg
     7261 gtaaccataa ttctttaaac gcttctacaa acaatgcacc ggcacgtttg aagttgactt
     7321 ttgacgaaat taaaaccgta ataataccgg caatcaataa tgctgtacct gtttgattta
     7381 aaatgttgaa tgttaacata atcggatgac ccgaaatatc attcattgtt cctggaatgc
     7441 caaatttaac attcataaat gataatgcgc catcttccaa aaagaggcct ttaaatgctt
     7501 ttgagctcca aattaataca agaattgtta aaataatgaa tggactccat gcaaatacga
     7561 cttctttgaa agaatgatgt ttgacttcca tcttttcttc gccagcattt aaacggaaaa
     7621 tatttttcgg ttggaatttt ttagagaata atgctaatgc acccattgaa gcaagtggtg
     7681 gaaggatatc cactaattca ggaccgaaaa attggttaaa gaagacttgt aatacaacaa
     7741 atggcacgac tgttacaata atcgctggta atgtttcttt aatcccttta aatccgtcga
     7801 taataaagac taataagaaa ggtacaatga cacttaaaat aggtaaactt aagtttgtcg
     7861 cctgagcaac gtctaatgct gatacgtcac cttttaatgc taatgtatcg ataacagaaa
     7921 ctggtaaacc aatagcacca aatgcacctg ctgcaccgtt acccactaaa caaagcattg
     7981 cagcttgtaa tggtttaaat ccaagttgaa tcagtaatac cgcacagatt gcgattggta
     8041 caccgaatcc agctacacct tctaaaaatg cgttgaacgc aaaaccaatt aataacaatt
     8101 gaatacgttg gtcttcagaa attgtcgtga tactatcttg tacaatagca aactgacctg
     8161 tcgccactgt cactttgtat aaccatacgg ccatcataac gataaagcca attggtaaaa
     8221 taccttgata gaaaccttct aaaataccac cagaagcaat gcctactggt aatttaaata
     8281 caactaatgc aatcacaagt gtgacgacga gtgttgtaat tgctgcataa atccctttca
     8341 ttttaaacac tgttaaacat aacaagaata aaatgattgg aatacttgca accaatgcag
     8401 aaattgcaag attgtgaaat ggatcaaaat gctctactaa catctctttt catctacctt
     8461 caatatttat tttttat
//
LOCUS       DANHOL010000106         8139 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.107, whole genome shotgun sequence.
ACCESSION   DANHOL010000106 DANHOL010000000
VERSION     DANHOL010000106.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 8139)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8139)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8139
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.107"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            35..1078
                     /locus_tag="PTC08_001754"
     CDS             35..1078
                     /locus_tag="PTC08_001754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-dependent alcohol dehydrogenase family
                     protein"
                     /protein_id="HDK5683259.1"
                     /translation="MKALVYRGPGKKEWIEVEKPQLQKPTDVIVKVVKTTICGTDLHI
                     LKGDVPAVTDGRILGHEGVGIVEEVGDSVTQFKKGDKVIISAVTACGSCYYCKKQLYA
                     HCEDGGWILGHLIDGTQAEYVRIPHADNSLHRVPDGANDEALVMLSDILPTSFEIGTL
                     SANVNPGDTVAIVGAGPIGLAAVLTAQFYSPAEIIMIDLDDNRLQAAKDLGATASINS
                     SSENVLERIHELTGGRGVDVAMEAVGIPATFELCQKIISPGARIANIGVHGTKVDLHL
                     EELWIKNISITTGLVSGYSTPLLLKTVESGKVQPEKLITHHFEMDDMLEAYEVFGNAA
                     QEGTLKVIISNDK"
     gene            complement(1208..1933)
                     /locus_tag="PTC08_001755"
     CDS             complement(1208..1933)
                     /locus_tag="PTC08_001755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3169 family protein"
                     /protein_id="HDK5683260.1"
                     /translation="MKVWRYLSFVLLGGIVGVFVSLLISGIDFQHLIEHIDFMDQQFM
                     VISCVIVTLCIIGLTLWQYQTQKAALKLKSRVDHQTEIEETDTLENQANMKFLKVSII
                     VYVQYFISFVYFFILALGNQGDKALITVLIPFLFTIIPAIMVGFFQRKFDRRFPKMGE
                     AKYTEKTFEMMDEGERLITVVSLYKVYHMNLSLIIIGVVLLSFFSLVTGINQFLGILF
                     MIVLFAYNTFGYLWKVSRFYREG"
     gene            complement(1930..2133)
                     /locus_tag="PTC08_001756"
     CDS             complement(1930..2133)
                     /locus_tag="PTC08_001756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017636694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDK5683261.1"
                     /translation="MKNRLKELRARDGYNQTQLAKKAGISRQTVSLIERNGFTPSILT
                     AIKIARIFGEPVENVFIIEEEDL"
     gene            complement(2393..3160)
                     /locus_tag="PTC08_001757"
     CDS             complement(2393..3160)
                     /locus_tag="PTC08_001757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IclR family transcriptional regulator"
                     /protein_id="HDK5683262.1"
                     /translation="MAEYTPIKTVIQTFEILDILSQHQKMGVSEMARLTMLPKSTIYR
                     HLRTLVDLNVVAQDKDENYYLGYKMLKYQNHMKQTDSLIHHLKPFMRRLVEKTGEAIN
                     LGILVNQEVCILHTEYGEQYTLQAQLGPTSMLHCSGMGKWFLNTFSDEALETYFKTAT
                     SRTIHTVTTAKAFKYDMATRPHQDIVVDREEYEYGLMCIATSIRDESGVIQASMSISG
                     PVSRLEHKGLDVMQETLLEEATKASNYLQDIGYWISR"
     gene            complement(3191..4549)
                     /locus_tag="PTC08_001758"
     CDS             complement(3191..4549)
                     /locus_tag="PTC08_001758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine transporter"
                     /protein_id="HDK5683263.1"
                     /translation="MKNNLQQPTTDKVDMKNLIKFIVATLLGIIIVLIPFSFANGVDT
                     ILFHVIKTFVSTFQGPITWLIALVFCISAVMAVIDQIWQPDWIRNNTTLKPLFSTTPF
                     YTVNRILGTLITLMCLFQVGPLFLTSEETGMTMVNLAVQLSVIVPIMLLFQTLILEFG
                     AMEFIGELIGFLIKPVFKISEICAVSAISAWVGPGNAAILASKELFEKGYYTVKETAI
                     LGSQFSTSSIGWVVLVCSVLGVVDDFGMIFLGITVIGMIVAFICVRIPPISRYPDVYV
                     DGTPLKEVQTATQLSKLKIATTQATERAAKVTAHNFISKKDNMMFYVVWLMPIIVCWG
                     TLALAISVYTPLLAWVSYPVQWILQFAGIPEAAVTASAIMSGFADNYLPVILGANLTE
                     STSKVVIAMMSILQLIFLSEIATLLTSANALQKFSHIVIIFLQRTFIALPFVIVFVKL
                     FF"
     gene            complement(4584..5516)
                     /locus_tag="PTC08_001759"
     CDS             complement(4584..5516)
                     /locus_tag="PTC08_001759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactate dehydrogenase"
                     /protein_id="HDK5683264.1"
                     /translation="MSKVSIIGAGAVGSTAAYLLSETPWVKEVVLVDVDRDRAQGQAL
                     DMMHGVGVSQAKRVIAGEYEATQGSDVIIITIGVPEKVGESRLIPLQKNADILKEIVP
                     KMTAYSPNAKIVTVSNPVDILAYTTYQISGKAPSDVIGLGTLLDTSRLKYLLSDYFNV
                     SPKSIEATVVGEHGDSQVVLWRHVRIGGLPLEAFAASQNMMLPDDFKETMAQRVKDTA
                     FDVWKMKGPNCYCVANAIQCLVEALLSPERRILPVSNLYTTSTGLTVYISLPSIVSEQ
                     GVEQMLPELLNAEEEAQLNASCAVMHDYIQQLTL"
     gene            complement(5957..8017)
                     /locus_tag="PTC08_001760"
     CDS             complement(5957..8017)
                     /locus_tag="PTC08_001760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit IIABC"
                     /protein_id="HDK5683265.1"
                     /translation="MFKLFFGQLQRVGKALMLPVAILPAAGILLALGNAMHNEQLVSL
                     APWLKHEVFVILSTIMESAGQVVFDNLPLLFAVGTALGLAGGDGVAALAALVGYLIMN
                     ATIGKVMHISIDQIFSFADGAKTLSQANKLPQHALILGIPTLQTGVFGGIIMGALAAW
                     CYNKFYNITLPQFLGFFAGKRFVPIVTSLVAIVTGVVLAFVWPPIQEGLNDLSNFLLN
                     KNLVLTTFIFGIIERSLIPFGLHHIFYAPFWFEFGSYVNQAGEVVRGDQRIWMAQMKD
                     GVEFTAGAFTTGKYPFMMFGLPAAAYAIYRQARPERKKIVGGLMLSAALTSFLTGITE
                     PLEFSFLFVAPILYVLHVLLAGTSFLVMHLLDVKIGMTFSGGFIDYILYGLLNWDRTH
                     ALYVIPVGIVYAIIYYFLFTFVIKHMNLKTPGREDEVAETRDTSVERLPFDVLDAMGG
                     KDNVKHLDACITRLRVEVLDKAKVDVNALKELGAAGVLEVGNNMQAIFGPKSDQIKHD
                     MALIMKGEITSPSQTTVSEEDEAVHIDGSRSVTIVAPCDGEVIPLSEVPDQVFSGGMM
                     GDGVGFIPRQSEIVAPFHGKVKALFPTKHAIGIESTDGVELLIHIGIDTVKLNGEGFE
                     SFVKVGDEVAEGQLLMKVDLEYLQQHAPSIVTPMIVTNLGERQIEVEDVKEVEKGQRV
                     FTVL"
BASE COUNT         2577 a         1777 c         1408 g         2377 t
ORIGIN      
        1 aataaagata gatatcctgg ggaggaatgt taaaatgaaa gcacttgttt atcgtggtcc
       61 tggaaaaaaa gaatggatcg aagttgaaaa gccacaattg caaaagccaa cagacgttat
      121 tgttaaagta gtgaagacaa caatttgcgg aactgactta cacattttaa aaggtgacgt
      181 ccctgctgta actgatggtc gtattttagg gcacgaaggt gtagggattg ttgaagaagt
      241 gggcgattca gtaacacaat ttaaaaaagg agacaaagtg attatttcag cggtgacagc
      301 ttgtggatca tgttactact gtaaaaagca actttatgcg cactgtgaag atggtggctg
      361 gattttaggt cacttgattg atggtacgca agctgagtat gtgcgtattc cacatgcaga
      421 caacagttta caccgtgtgc cagatggtgc gaatgacgaa gcgcttgtta tgctgagtga
      481 tattttacca acaagttttg aaattggtac attaagcgcg aacgttaacc ctggtgacac
      541 tgttgcgatt gtaggtgcag gtccaatcgg tttggctgct gttctcactg cacaattcta
      601 ctcacctgct gagattatta tgattgacct tgatgacaat cgtttacaag ctgctaaaga
      661 tttaggtgca acagcttcta tcaacagtag tagcgaaaat gtcctcgaac gcattcatga
      721 attaactggt ggacgtggtg ttgatgtcgc aatggaagca gtgggaattc cagcaacatt
      781 cgaattatgt caaaaaatta ttagccctgg tgcccgtatt gctaacattg gtgttcacgg
      841 tacaaaggtt gatttacacc ttgaagaatt atggattaaa aatatctcta taacaacagg
      901 tcttgtaagt ggatactcta caccactctt actaaaaact gtagagtcgg gtaaagtgca
      961 acctgaaaag cttattacgc accacttcga aatggatgac atgttagaag cctatgaagt
     1021 gtttggcaat gccgctcaag aaggcacatt aaaagtgatt atttctaacg acaaatagac
     1081 tgacattctt ttacattcaa aataaaaaga gtaaggacat gcacttcatg tgtcgtcttt
     1141 actcttttca ttttcaacca cttcaactgt gccggtagtg ttcgggtaga catcccgcac
     1201 actgccttta cccctctcga taaaatcggc tcactttcca taaataaccg aatgtattgt
     1261 aagcaaacaa tacaatcatg aacaaaatac ctaaaaactg attgatacct gtcactaaag
     1321 aaaagaatga gagcaataca acaccgatga taatgagtga taaattcata tgatacacct
     1381 tgtagagtga cactacagta ataagacgct ccccttcatc catcatttca aaagtttttt
     1441 ccgtatattt tgcctccccc atttttggaa agcgacgatc aaactttctt tggaaaaaac
     1501 cgaccatgat tgctgggata atcgtaaaaa gaaatgggat caatactgtt attaatgcct
     1561 tatccccttg attccctaac gctaggatga aaaagtaaac aaaactaatg aaatattgta
     1621 cgtaaacgat gatactgact tttaaaaatt tcatattcgc ttggttttct agtgtatcag
     1681 tttcctcaat ttctgtctga tgatctacgc gagacttcag ttttaatgct gctttttgtg
     1741 tttgatattg ccataatgtc agcccaatga tacatagcgt gacgatgaca catgatatca
     1801 ccataaattg ttgatccata aaatcgatgt gctcaatgag atgttgaaag tctatcccac
     1861 ttattaataa tgaaacgaaa acaccgacga taccgccaag aagtacaaac gataaataac
     1921 gccatacttt catagatctt cctcctctat gataaagaca ttctctaccg gttctccaaa
     1981 tatacgcgca attttaatcg ccgtgagtat cgaaggtgta aatccattgc gttcgattaa
     2041 cgagaccgtt tgacgtgaaa tgcctgcctt tttcgcgagt tgtgtctggt tgtagccgtc
     2101 acgtgcccgc agctccttca acctattttt catgccttca actccttact tcattcaata
     2161 tatatgctat tagtcatttt gacaagcatg ttagtcaaag aagaaacaat agcatccatt
     2221 tttacgtcca attctcctta tttttcgaga gtttaatcat cattaatcga tataagtcca
     2281 taataataaa agaaactggg aaaacttaat gtcccagtct cttcactatt aaaatgacgt
     2341 caaacatact acacgatgaa ctgttttctt tattataaat ggatgcaatc gctcatctcg
     2401 atatccaata accgatatct tgcaagtaat tactcgcttt tgttgcttct tcaaggagcg
     2461 tttcttgcat cacatccaat cctttatgtt ctaagcgact gactggccct gaaatactca
     2521 tcgaagcctg aataacgcct gattcatctc taatcgatgt cgctatacac atcaaaccgt
     2581 attcatattc ttcacgatcg accacgatat cttggtgagg ccgcgtcgcc atatcatatt
     2641 taaaagcttt agccgttgtc accgtatgaa tcgtacgtga tgtcgccgtc ttaaaataag
     2701 tttccaacgc ctcatctgaa aatgtattta aaaaccattt tcccatccct gaacaatgca
     2761 acattgatgt aggaccgagt tgtgcttgta atgtatactg ttccccatat tccgtgtgca
     2821 aaatacacac ttcttgattg accaatatgc ccaaattaat cgcttctccg gttttttcca
     2881 ccagccgacg cataaacggc ttgagatggt gaatcaatga gtccgtttgc ttcatatgat
     2941 tttgatattt taacatttta taaccgaggt aataattttc atctttatct tgcgcaacga
     3001 cattcaaatc cactaaagtt cttaaatgac gataaatggt acttttcggt aacatcgtca
     3061 atcgcgccat ctcactgact cccatttttt gatgttgaga caatatatct aaaatttcaa
     3121 atgtttgaat gacagtttta ataggcgtat attcggccac atcgattccc caccttttct
     3181 gtgatttcat ttagaagaac agtttcacaa atacgataac aaacggtaat gcaatgaaag
     3241 tgcgttgtaa gaaaataata acaatgtgcg aaaacttttg aagcgcattc gctgatgtga
     3301 gcaacgttgc aatttcggat aaaaagatca actgcaaaat actcatcatc gcaatcacga
     3361 ctttacttgt tgactctgtt aaattcgcac ctaaaatgac aggtaaatag ttatccgcaa
     3421 agcctgacat aattgcactc gctgtgacag ccgcttccgg tatgcctgcg aattgtaaaa
     3481 tccattgaac tgggtaagac acccaagcaa gtaaaggcgt ataaacggaa atcgcaagtg
     3541 ctaatgttcc ccaacaaaca atgatgggca ttaaccaaac aacatagaac atcatattgt
     3601 cttttttact aataaaattg tgtgctgtca ctttcgctgc acgttcagtc gcttgtgtcg
     3661 tcgctatttt aagtttagat agttgcgttg ctgtttggac ttcttttaat ggtgtcccgt
     3721 caacataaac atctggataa cgagaaatag gcggaatacg tacacagata aatgcaacaa
     3781 tcatgccaat cactgtaatc cctaagaaaa tcatgccgaa atcatcgaca acaccgagca
     3841 cactacacac gagaacgacc caaccaatac ttgatgtcga aaattgacta ccgagaatcg
     3901 ctgtctcttt cactgtataa tacccttttt caaacaattc cttagaagcc agtatcgccg
     3961 cattccccgg tccgacccaa gcactaattg cactgactgc acagatttca gagattttaa
     4021 agaccggctt aattaaaaat cctatgagtt caccgataaa ttccatcgca ccaaattcta
     4081 aaatgagtgt ttggaaaagc aacataatcg gaacaatgac agatagttga acggctaaat
     4141 ttaccatcgt catccctgtc tcttccgaag ttaaaaacaa tggtccaact tgaaataaac
     4201 acattaaagt aatcaacgta ccgagtatcc ggtttaccgt ataaaatggc gttgtcgaaa
     4261 aaagaggttt caacgtcgtg ttgttacgaa tccaatccgg ctgccaaatt tggtcaatca
     4321 cggccattac tgcactaata caaaaaacaa gcgcaatcaa ccaagtgatc ggtccttgaa
     4381 acgttgaaac aaaggtcttt atgacgtgaa ataaaattgt atcgacacca ttcgcaaaag
     4441 aaaatggaat gagtacaatg ataatcccta aaagtgtcgc aacaataaat ttaatcaagt
     4501 ttttcatatc tactttgtca gttgtcggtt gttgtaaatt atttttcatc atcaaaactt
     4561 ccttgtcatt ggtctttact tcattacaaa gtcaattgtt gaatatagtc atgcatcact
     4621 gcgcacgaag cgttcaattg tgcttcctct tctgcattca gtaattcagg aagcatttgt
     4681 tcaacccctt gttcactcac aatacttggt agactaatat aaactgtcaa acccgttgat
     4741 gttgtatata aattcgacac tggtaatatg cgtcgttctg ggcttagcag tgcttctacc
     4801 aaacattgaa ttgcattcgc tacacaataa caattcggtc ctttcatttt ccatacatca
     4861 aaagctgtat ctttcacacg ttgtgccatc gtttctttga agtcatctgg taacatcata
     4921 ttttgagatg cggcaaatgc ctctaacggc agaccaccga tacggacatg acgccataag
     4981 acgacttgcg aatcaccatg ttccccgaca acagtcgctt caatactttt tggactcacg
     5041 ttaaagtagt cactcaacaa atatttcaga cgtgacgtat cgagcaatgt gcctaaacca
     5101 atgacatctg aaggtgcctt gccactgatt tgataagtcg tatacgctaa aatatcgacc
     5161 ggattgctca ctgttacgat tttggcattc ggactatacg ctgtcatttt cggcacaatt
     5221 tcttttaaaa tatctgcatt tttctgcagt ggaatcaggc gagactcccc tactttttcc
     5281 ggtacgccaa tcgtaataat aatgacatca gaaccttgtg tcgcttcata ttctcctgca
     5341 atgacacgtt tcgcttgtga tacaccgaca ccatgcatca tatctaacgc ttgcccttga
     5401 gcccggtccc gatccacatc gaccaacaca acctccttta cccatggcgt ttcagataac
     5461 aaatacgcag cagtcgaacc tactgcaccc gcaccaataa tactcacttt gctcatatca
     5521 tttcaccctt tcaaaatgga acgtgtttca tttttcgatt taagcatacc ccaaacttca
     5581 tgacgaaaca ataattttgt gaaataaatc acaaatatgt cacaacttat aaaacaagcc
     5641 ggtttggtcg gtcaagttac gtattcatga gacttttggg gagacaaaag tagttgaatt
     5701 tcgctgtaaa tgaaagaggt gtggatactg tatatccaaa aatgaacata tccgtttaaa
     5761 tgatgatata ggaaagtgat aactgtgcat caagacaaat tgagttgaga catcagtcct
     5821 tgagaaagag aaaaagcgtc aaagcaatct atttatcatc aatccaaaac atttgtgttc
     5881 aaaatacaca aaaaaggtgc cctatcagca tttacacaaa cactgataca gcacctacta
     5941 tcattcacac taactgttat aaaacagtga atactctttg acctttctca acttccttaa
     6001 cgtcttctac ttcaatttga cgctctccta agtttgtcac aatcatcggc gtcacaatac
     6061 ttggcgcatg ttgttgcaga tattctaaat ccactttcat caacaattga ccttccgcca
     6121 cttcatcgcc gactttaacg aaactttcaa agccttctcc atttaatttc actgtatcaa
     6181 taccgatatg aatcagcaat tctaccccgt ctgttgattc aataccaatc gcatgttttg
     6241 ttgggaataa ggctttcact ttaccatgga atggcgcgac aatttcagac tgacgtggga
     6301 taaagcccac accgtcaccc atcataccgc ctgaaaagac ttgatcaggc acttctgata
     6361 acggtatcac ttctccgtca catggcgcaa caatcgtcac acttctcgaa ccatcaatat
     6421 gcacagcttc atcttcctca gagaccgtcg tttgactcgg actcgtaatt tcacctttca
     6481 taatgagtgc catgtcatgc ttaatttgat cagatttcgg tccaaaaatg gcttgcatgt
     6541 tgttgccgac ttcaagcaca cctgcggcac ctaattcttt caatgcgttc acatcaactt
     6601 ttgctttgtc caaaacttcg acacggagac gcgtaataca tgcatctaaa tgtttcacgt
     6661 tgtctttacc acccatcgca tcaagcacat caaatggtaa gcgctcaact gacgtatctc
     6721 tcgtctctgc aacttcatct tcacgaccag gcgtttttaa attcatatgc ttgatgacaa
     6781 aagtaaataa gaagtagtaa atgatagcgt aaacaatacc tactggaatc acgtataagg
     6841 catgggtgcg atcccaattc agtaaaccat ataaaatata atcaataaaa ccacctgaga
     6901 atgtcattcc aatcttaaca tctaataaat gcatgactaa gaaagatgtc cctgctaaca
     6961 atacgtgtaa tacgtataaa atcggtgcaa caaataaaaa tgagaactct aatggttctg
     7021 taatgcctgt taaaaatgat gttaatgccg cggataacat caaaccaccg acaatctttt
     7081 tacgctctgg tcgcgcttgt cgataaatcg catatgctgc cgctggtaaa ccaaacatca
     7141 tgaatggata tttacctgtt gtgaaagcac cggctgtaaa ttcgacgcca tctttcattt
     7201 gtgccatcca aatacgttga tctcctcgaa ccacttcacc agcttgattc acgtatgagc
     7261 caaattcaaa ccaaaatggc gcatagaaaa tgtgatgtaa accaaatgga atcaacgaac
     7321 gttcaataat tccaaaaata aatgtcgtta atacaaggtt tttgtttaat aagaagtttg
     7381 ataaatcatt aaggccttct tgaatcggtg gccaaacaaa tgccaacaca acccccgtaa
     7441 caatcgcaac caatgatgtc acaatcggta caaaacgttt accagcaaaa aaacctaaaa
     7501 actgtggtaa tgtaatgtta taaaatttgt tgtaacacca tgctgctaac gcccccataa
     7561 tgataccgcc gaatacacct gtttgtaatg ttgggatacc tagtatcaag gcatgctgtg
     7621 gtaacttatt cgcttgactt aatgtttttg cgccatcagc aaaagaaaag atttgatcga
     7681 tactaatatg cattacttta cctatcgttg cattcataat taagtaaccg accaatgctg
     7741 ctaatgctgc gacaccatca ccgcctgcta aacctaatgc tgtccccact gcaaaaagta
     7801 aaggtaaatt atcgaatacc acttgacctg ctgattccat aattgtagaa agaatgacaa
     7861 atacttcatg cttcaaccat ggtgccaagg atacgagttg ctcattgtgc atggcattac
     7921 ctagtgcaag taaaattccg gcagccggca aaatggcaac cggaagcatt aacgccttcc
     7981 ctactctttg taactgtcca aaaaaaagtt taaaaatcat taaaacaccc ctttaaaatc
     8041 attgagtcat gtaaaaaggc atgagcaaat aaaaccgtta taaaacagtt tctttttgct
     8101 catgcctgat tatcagtaac acgctttata tcgaattaa
//
LOCUS       DANHOL010000107         7992 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.108, whole genome shotgun sequence.
ACCESSION   DANHOL010000107 DANHOL010000000
VERSION     DANHOL010000107.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 7992)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7992)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7992
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.108"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(<1..639)
                     /locus_tag="PTC08_001761"
     CDS             complement(<1..639)
                     /locus_tag="PTC08_001761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683266.1"
                     /translation="MVKTNLPLFQHFEDLRNHPTWKVKAILMMVVTLIHAFLLKIDTD
                     NTTLLEGFGYSKQDIEEFHQIHWFADTMSSLMGVLISFLFTFVVFMMFSKLLHSDVSA
                     QTILSASFSHSLIVTTVALVFVCIQLIFHLPFPTYNITSLNIFLPGNMYLAAFDVQTI
                     FKGYVTFIVYYATSRLSLRAALTLGLLTIALTILLALGSAALEDTILSLAGEL"
     gene            817..1419
                     /locus_tag="PTC08_001762"
     CDS             817..1419
                     /locus_tag="PTC08_001762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683267.1"
                     /translation="MVFSKPLYIEAFNRDRTQPHLWKKILLLLVLIIIHAALATFTVD
                     YTQQLTEQGLTEAQAQQASPIVMVIGIIGVIIVSIIFVGITFVITLIIYKIFKKALSK
                     KGIFGGVLRYYNTVLCATIIISAIQLLFHLDITTVKIDSLNIFAPDNALLSAFSLTNL
                     LSGWLFGVMLHSNGHLPAKWSWLLGIAVFILSVVFTAIAA"
     gene            complement(1478..1930)
                     /locus_tag="PTC08_001763"
     CDS             complement(1478..1930)
                     /locus_tag="PTC08_001763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1648 domain-containing protein"
                     /protein_id="HDK5683268.1"
                     /translation="MKQINRCIPILWLVSIVILALFYTQLPAQVGTHLNFNGDVDGWG
                     AKSQLWILPVIFLVIWVFLSLLLHYAPVWEHTIQGATVEKSRSQRRDVLHTLVIVQLT
                     VWVLYMVYLIGTINGKEGIPFWLMWLAYLAIGLTLVTRIVHVFKRNQA"
     gene            complement(1917..2780)
                     /locus_tag="PTC08_001764"
     CDS             complement(1917..2780)
                     /locus_tag="PTC08_001764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructosamine kinase family protein"
                     /protein_id="HDK5683269.1"
                     /translation="MNEKWYHTLPLDDIQSIEPVNGGDVNQAFRINTNESPYFLLIQP
                     GREASFFDAEVAGLEAFEAAGVTAPKVIDQGQVDQDAYLLLSYLDEGQSGSQKALGKL
                     VAQLHQTHEREGRFGFHLPYEGGDIQFDNTWADDWQTLFLKQRMDPLAEVIRQRQLWS
                     DSDDALFEKVYGLMADTLAQHESLPSLLHGDLWAGNYMFLTDGRPALFDPAPLYGDRE
                     FDLGATKVFGGFSPAFYEAYDTAYPLAEGATLRIRFYELYLLLVHLVKFGTMYLGSVR
                     TTMEEIVDEAN"
     gene            2893..3555
                     /locus_tag="PTC08_001765"
     CDS             2893..3555
                     /locus_tag="PTC08_001765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HDK5683270.1"
                     /translation="MEDKRQMLLDTFNYRFATKRFDASRKIDDADFDTILETGRLSPS
                     SLGLEPWKFLVIQDPEMREALKSISWGAQGQLDTASHFVLILARKNVRPENEYFQKLL
                     RDVKQLDTDMIEQMSEKTSAFQNDNLHLYESERALWDWASKQTYIVLGNMMTSAAFLG
                     IDSCPIEGFQYDEVSRILTEKGYFDDAEYAPSVMVAFGYREEDPKRAKTRRSKEEVID
                     WV"
     gene            3889..4878
                     /locus_tag="PTC08_001766"
     CDS             3889..4878
                     /locus_tag="PTC08_001766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter substrate
                     binding protein"
                     /protein_id="HDK5683271.1"
                     /translation="MRKLVTCFMGLVLILAACTNNDKDDKPQTSSSQKFPNGTVEIIA
                     PASPGGGWDATARAIQKIMQDEKLTDQNITVVNKPGGGGEVGWQYLSERQPTSIAINS
                     SLLLSNHELGLSDLRHQDFTPIAILATEWISLSASNQSHLSSGKEVMKKLKADPKSLT
                     IGVAPGLGNNDHLAFVQAAKAYGVDVKHLDFLVYKSGGDLETALLGGHVDIASTAVSE
                     VKTQHQAGKLKVLATTSDQRVKGLEDVPTWKEQGLNMVFPHWRGVMGPKNMTKEERAY
                     WNDTMKKVVHSKQWETIRKNKNWDAFYKDSYESEKFLNEQQKKYKQLIQDAGF"
     gene            4897..5340
                     /locus_tag="PTC08_001767"
     CDS             4897..5340
                     /locus_tag="PTC08_001767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter TctB
                     family protein"
                     /protein_id="HDK5683272.1"
                     /translation="MVRLIAPIVCFVVGVIYLLLSLNLPISRIGDPQSPKYFPILIAS
                     LLIVMSIIYFFQMLRDKNVSFNEFKAFLTPLVLKRIGLTFLFILIYTIIFERIGFLIS
                     TVLFLAAVMFLVNGFQHWLKNLIVAIVFSGVAWYTFAQLLDVSLP"
     gene            5353..6852
                     /locus_tag="PTC08_001768"
     CDS             5353..6852
                     /locus_tag="PTC08_001768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter permease"
                     /protein_id="HDK5683273.1"
                     /translation="MGIDINSFWEGLSTAFQPMNLLWILVGGFLGTVVGMLPGLGPAT
                     AVAVLIPVTFGMNPVSALILMISIYYGAMYGASRSSILLNTPGDGSAIAATFDGYPMT
                     LNHQAGKALTISAVASLFGGLFSVIGFILLAKPLSEFALHFGPREYFVLFLFTLSMVV
                     TLSLGKMVKGFIAMSIGLMMSTIGVDLQTSVYRFTFDVTHLSEGIDFLVIIIGVYAVA
                     EVLYNYMHLDTLVPPKSDLGSMKLTKEDWKRTRWTMLRQSPIGFLIGVLPGAGGSVAS
                     LLSYATEKQFSKNGKLFGKGAIEGVAAPEASNNAASVGSLIPLLTMGVPGSGTTAVIL
                     GAVVMLGLQPGPLLFEKQPEMVWTLVNSMFIGNIFLVIINIAMISLLLKILKTPPKTL
                     YPIILVLAFLCTYTLSYSVIDFYILLIFGIIGLLLKLLDFPIAPLILASIIGSDMEQN
                     FRKSLITSHNQLGDIFFGSPIAIVLTMMTVLALFYPFIMKLLKKKTASN"
     gene            complement(6909..>7992)
                     /locus_tag="PTC08_001769"
     CDS             complement(6909..>7992)
                     /locus_tag="PTC08_001769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HDK5683274.1"
                     /translation="DGRVRIILRKGPMISTLKEKYQNEFVRQRGIYKSFEKRLYPKAL
                     FEREFRKIFGDSQFDYAIDYSGYAMFWSNLILASGAKKKYILLHSDIKSDMERTVKGK
                     RPHYQNLKGVISLYPYFDKLVSVSEATKKLNQTNFGGLKLKNRHIASRNTINIKKINQ
                     LVDDDSDLFEKNGTPVLATLTEHGMEGIEFSQDDFKIVSVGRLSPEKGFDLLIKAVAE
                     LAPKYPQLKLYILGDGPLKGTLKSLVEQLGIQNHVYFLGQRRNPFFIVKRADVFALTS
                     HYEGQSMVILEALTVGTHVLASDIIANRYVLEDEKYGMLVEKNEVDIAKGLEQFINGT
                     NKDYAKFDAVAYNEETIQEFYSLLER"
BASE COUNT         2452 a         1643 c         1468 g         2429 t
ORIGIN      
        1 caattctccg gctaaactga gtatcgtgtc ttctagagcc gctgaaccta acgccagtaa
       61 tatcgtcaat gcaatggtta acaagcctag agtcaaagca gcgcgtaaag acaaacgact
      121 tgtcgcataa taaacgataa atgtcacata acctttgaat atcgtttgta catcaaaagc
      181 agctaggtac atattccctg gtagaaatat attcaagctt gtaatgttat atgtaggaaa
      241 tggtaaatga aagatcagtt gaatacatac aaatactaga gcaaccgtcg tcacaataag
      301 cgaatgactg aatgaggcag ataatatcgt ttgggccgaa acatcggagt gcaacagttt
      361 agaaaacatc ataaatacaa caaatgtaaa caaaaaacta atcaataccc ccatcaaact
      421 actcatcgta tcagcgaacc aatgaatttg atggaactct tcaatatctt gttttgaata
      481 accaaaacct tctaataacg ttgtattatc cgtatcaatt ttcaacaaaa acgcatgaat
      541 gagtgtcaca accatcatta aaattgcttt cactttccat gtcgggtggt tgcgcaagtc
      601 ttcaaaatgt tggaatagag gtagatttgt cttgaccaac tttgtttgcc tcctcaaaaa
      661 gattatctta atattatcac attgttagag gcttttttat atttcaagta aaaattctaa
      721 aatatgacaa aagcttatac aaatatcgtg attcaagtat aaaattatat tatttaatgc
      781 tatactattt ttaatacttt tatgggaggc aggtctatgg tattttcaaa accactgtat
      841 atagaagctt ttaacagaga taggacacaa cctcatttat ggaagaaaat tttattactt
      901 ctagttttaa tcatcatcca tgcagcactg gctactttca cggtagatta cactcaacag
      961 ctcactgaac aaggattaac ggaagcacaa gcacaacaag cctcacctat cgtcatggtg
     1021 atcggcatca ttggtgtcat catcgtaagt ataatttttg tcgggatcac tttcgtcatc
     1081 acattgatca tttataagat tttcaagaaa gcactctcta aaaaagggat attcggtggc
     1141 gtattacgtt actacaatac ggtattatgt gccactatta ttatcagtgc catccaacta
     1201 ctatttcatt tggatatcac aacagttaaa attgattcgc taaatatttt cgcaccagat
     1261 aacgcgcttt taagtgcctt tagtttaacg aatttgttgt caggttggtt attcggtgtc
     1321 atgcttcatt caaatggtca tttacctgcc aagtggtctt ggctattagg catcgcagtg
     1381 ttcatcctaa gtgtcgtatt taccgcaatc gctgcataaa gcatacataa aaaagagaga
     1441 ggctggtaac ttaaactcag cctctttctt atcgttgtta tgcttgattt cgtttaaaga
     1501 catggacgat acgagtgacc aatgtcaatc cgatggcgag atacgcaagc cacatgagcc
     1561 aaaacggtat cccttcttta ccatttatcg taccaatcag atacaccatg taaagcaccc
     1621 acaccgtcaa ctgtacgata actaaagtgt gcaatacatc tcgacgttgt gaccgacttt
     1681 tttcaacggt tgccccttga atagtgtgtt cccatactgg cgcatagtgt agcaacaaag
     1741 atagaaaaac ccagataacc aaaaatatca ccggtaaaat ccacaattga cttttcgcac
     1801 cccatccgtc tacatcacca ttgaagttca aatgtgtccc cacttgcgca gggagttgcg
     1861 tataaaatag cgctaatatg acgatcgaaa ccaaccacaa aattggaata cagcgattaa
     1921 tttgcttcat ctacaatttc ctccatcgtg gttctgacac tacctagata catcgtgcca
     1981 aacttcacta aatggacgag caataaatac aactcataaa atcgaatgcg taacgtcgcc
     2041 ccttcagcga gtggataggc tgtatcataa gcttcataaa atgctggact aaatccacca
     2101 aaaactttcg ttgctcctaa gtcaaattcg cggtcgccgt ataaaggtgc aggatcaaac
     2161 agcgcgggac ggccatcagt taaaaacata taattgcctg cccataaatc tccgtgtaac
     2221 aaagacggta ggctctcatg ttgggctaac gtgtctgcca ttaagccgta taccttttca
     2281 aataacgcat catccgaatc agaccacaat tgacgctgac gaatcacctc agcaagcggg
     2341 tccatccgtt gttttaaaaa taatgtttgc caatcgtctg cccacgtatt atcgaattga
     2401 atatccccac cttcataagg caaatgaaat ccaaatcgac cttctcgttc atgtgtttga
     2461 tgcaattgtg caaccaattt tccgagcgct ttttgactgc cactttgtcc ttcgtctaaa
     2521 tagctcagta atagataagc atcttgatca acctgtcctt gatcaatcac tttcggcgcc
     2581 gtcacacccg ctgcttcaaa cgcttcgaga cccgcgactt ctgcatcgaa aaatgacgct
     2641 tcacgacctg gttgaatcaa caaaaagtaa ggactttcat ttgtattgat gcgaaaagct
     2701 tgattgacat caccaccatt gaccggttca atcgactgga tatcgtcgag tggtaaggtg
     2761 tgataccatt tttcattcat gacattcaac cccttttctc ttttgaaatt gaatccaaac
     2821 aaactatttt aacgtcgatt taaagtcatc tatactataa ttgtatgaca ctacttaaag
     2881 gagttgcaac aaatggaaga taaacgccaa atgttactag atacatttaa ttatcgcttt
     2941 gctacaaaac gttttgatgc aagtcgtaaa attgacgacg ctgatttcga tacaatttta
     3001 gaaacaggac gtctgtcacc aagttcactt gggcttgaac cttggaaatt tttagttatt
     3061 caagatcctg aaatgcgtga agcactcaaa tcgattagtt ggggcgctca aggacaatta
     3121 gacacagcga gtcatttcgt attaatttta gctcgtaaaa atgtacgtcc agaaaatgaa
     3181 tatttccaaa aattattacg cgatgtgaag caattggata cggatatgat tgaacaaatg
     3241 agcgagaaaa catccgcatt ccaaaacgac aatttgcatc tttacgaaag cgaacgtgca
     3301 ttatgggact gggcaagcaa acaaacctat attgtacttg gaaacatgat gacatctgca
     3361 gcatttttag gcatcgattc atgtccaatt gaagggttcc aatacgatga agtatcacgt
     3421 attttaactg aaaaaggcta tttcgatgat gcagagtacg caccatcagt tatggtggca
     3481 tttggttatc gcgaggaaga tccaaaacgt gccaaaacac gccgtagcaa ggaagaagtt
     3541 attgattggg tttaatcgcc atcagtcaaa catgaaggat gactgacatc aagattaata
     3601 ggctgtataa atacgaatct ttagcttaat atctgtttat aaggaagcca acataataaa
     3661 cactaatccc cccactgccg ctattagtga ggggattctt tttgtcatca acttcttctc
     3721 acactctttt atcattaaaa gctgctctcc catcttcttt caaactttga ttgataacca
     3781 aaatcaaaat aatgttgaca atagtatatc atttgaatcc aacctctata attctgaata
     3841 ttatgataaa atataactaa ttgtcacata caaagggggt atggagttat gcgaaaactc
     3901 gtgacatgtt tcatgggcct tgtgctcatt ttagcagctt gtacgaataa cgacaaagac
     3961 gacaaacctc agacgtcaag tagtcaaaaa tttcctaatg gcacagtaga aattattgca
     4021 cctgcttcac ctggtggggg ctgggatgcg actgcacgcg ctatccaaaa aattatgcaa
     4081 gatgagaaat tgactgatca aaatattaca gtcgtcaata aaccaggggg tggtggcgag
     4141 gtaggctggc aatatctcag tgaacgccaa cctacatcga ttgcaattaa ttcaagtttg
     4201 ttactttcca accacgaact cggtttaagt gatttgcgtc accaggattt tacaccgatt
     4261 gcaattttag cgacggaatg gatcagttta tccgcttcta accaatctca tctgtcttct
     4321 ggtaaagaag taatgaaaaa gttaaaagcc gatccgaagt cattaacgat tggtgtagcc
     4381 cctggtttag ggaataacga ccatcttgct tttgtacaag ccgcaaaagc atatggcgtc
     4441 gatgtgaaac atttagactt tctcgtttat aaaagtggcg gtgatttaga aaccgcgctc
     4501 ctcggtggac acgtggatat cgcttcaaca gccgtttctg aagtgaaaac gcaacatcaa
     4561 gcaggcaagc ttaaagtatt ggcaaccact tctgatcaac gtgtgaaagg tttagaagat
     4621 gttccaactt ggaaagaaca aggtttaaac atggtcttcc cacattggcg tggcgtgatg
     4681 ggacctaaaa atatgacaaa agaagagcgc gcttattgga atgacaccat gaaaaaagtc
     4741 gttcattcaa agcaatggga gaccattcgc aaaaacaaaa actgggatgc tttttacaaa
     4801 gacagctatg aatcagaaaa gtttttaaac gaacaacaga aaaaatataa acaactgatt
     4861 caagacgctg gtttttaaac aaagggggaa tcaaaaatgg tacgacttat tgcgcctatc
     4921 gtttgtttcg ttgttggcgt catctattta ctcctctctc tcaatttacc gatttctaga
     4981 attggtgatc cgcaaagtcc aaaatatttt ccaattctta tcgcgagttt attgattgtg
     5041 atgagtatca tttacttttt tcaaatgctt cgtgataaaa atgtgtcatt caatgaattc
     5101 aaagcatttt taacacctct cgttctgaaa cgcattggac tgacattttt atttatcctt
     5161 atttatacaa ttatttttga acgtatcggc tttttaattt cgacagtatt gtttctcgca
     5221 gcagtgatgt ttctagtcaa tggctttcaa cattggctga aaaatttaat cgttgctatc
     5281 gtcttttcag gtgtcgcatg gtataccttt gcacagctgt tagacgtgag tttgccataa
     5341 ggaggcggtc atatgggtat cgatatcaat agtttctggg aagggctctc gaccgccttc
     5401 caaccgatga atttattgtg gattttagtt ggcggctttc tcggtacagt cgtagggatg
     5461 ctgcctggtt taggacctgc gacggcggta gctgtactga ttcccgtcac atttgggatg
     5521 aatccggtca gtgcgttaat tttgatgatt tcgatttact atggggcaat gtatggtgcc
     5581 tccagaagtt cgattttgct aaatacacca ggagacggat cagccattgc tgcgacattt
     5641 gatggttatc cgatgacact caatcatcaa gccggtaaag ctttaacaat ttctgcagtt
     5701 gcgtcactgt ttggcggtct cttttcagtc attggcttta ttcttcttgc caagccgtta
     5761 tccgaatttg ctctacactt tggaccacgt gaatatttcg tcttattctt attcacattg
     5821 tccatggttg tcacattatc gctcggtaaa atggtcaaag ggtttatcgc catgtctatc
     5881 ggtttaatga tgagtacgat cggcgtcgac ctacaaacca gtgtgtatcg tttcactttt
     5941 gatgtgacgc atttaagtga aggcattgac tttctcgtaa tcattatcgg tgtctatgct
     6001 gtcgctgaag tcctatacaa ctacatgcat ttagatacat tagtgcctcc gaaaagtgat
     6061 ttaggctcga tgaaattaac gaaagaagat tggaaacgga cgcgctggac gatgttaaga
     6121 caaagtccta ttggtttcct tatcggggtt ttacctggtg cgggtgggtc agtggcttcc
     6181 ctactcagtt atgcgactga aaaacaattt tcaaaaaatg gtaaactgtt tggtaaaggg
     6241 gcgattgaag gggtcgcagc accagaagct tcgaacaatg ccgcttcagt cggttcactc
     6301 attccgctat taacgatggg tgtacccggt tcaggaacga cagccgtgat tctcggtgca
     6361 gttgtgatgc ttggtttaca acctggacca ctcctattcg agaaacaacc cgaaatggta
     6421 tggacactcg ttaatagtat gtttattggc aatattttct tagtcatcat caatattgcg
     6481 atgattagtc tgttgttgaa aatcttaaaa acaccaccaa aaacacttta tccaattatt
     6541 ttagtactcg cctttctctg tacgtacaca ttaagttata gtgttattga cttctacatt
     6601 ttattaattt tcggcatcat tggcctgtta ttaaaattat tagattttcc aattgcacca
     6661 ctcattttag cgtccattat cggctcagat atggaacaaa acttccgtaa aagcttaatt
     6721 acgagtcaca atcaactcgg cgacattttc ttcggttcac cgattgcgat tgttttaacc
     6781 atgatgactg tattagcatt attctatcca ttcatcatga aactgttgaa gaaaaaaaca
     6841 gcttcaaatt gaggttaaaa tgaaaaaaag agggcactca ttgtgagttc accctctttt
     6901 ccatacattt aacgctctag taacgaataa aactcttgga tggtttcttc attatatgca
     6961 acagcatcaa actttgcata atctttgttc gtaccattaa taaattgctc taaaccttta
     7021 gcaatgtcaa cttcattctt ttctactaac atgccgtact tctcatcttc aagcacataa
     7081 cggttagcga taatgtctga agcaagcaca tgcgtcccta cagtcaacgc ttctaaaatc
     7141 accatagatt gtccttcgta atgagaagtg agtgcaaaga catccgcgcg tttcacaata
     7201 aaaaacggat tacgacgctg ccctaaaaag taaacatgat tttgtatacc aagctgctcg
     7261 acaaggcttt tcaacgtccc cttcaatggt ccatctccta gaatgtataa ctttaactgt
     7321 ggatatttcg gagccaactc agcaacagct ttaataagta aatcaaaccc tttttctggt
     7381 gataatcgac ctaccgatac aattttgaag tcatcttgag aaaattcaat cccttccatg
     7441 ccatgctctg ttaacgttgc taatacaggt gtcccatttt tttcaaataa gtcactgtca
     7501 tcatcaacca gctgattaat ctttttaata ttgatcgtat ttcttgaagc aatatgacga
     7561 tttttcaact tcagaccacc aaagttagtc tgattaagtt ttttcgttgc ttctgaaaca
     7621 ctcactaatt tatcaaaata cggataaagt gaaataacac ctttcaagtt ttgatagtgt
     7681 ggacgcttcc ctttcactgt tctctccata tccgacttaa tatcactatg caataagata
     7741 tatttctttt tagcgccact cgccaaaata agatttgacc agaacatcgc atacccactg
     7801 taatcaatcg cataatcaaa ttgagagtct ccaaatattt ttctaaattc acgttcgaaa
     7861 agtgctttcg ggtataaacg tttttcaaaa gacttgtaaa tccctctttg tcgaacaaat
     7921 tcattttgat atttttcttt taaagtagaa atcattgggc cttttcttaa aataatacgt
     7981 acgcgaccat ca
//
LOCUS       DANHOL010000108         7692 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.109, whole genome shotgun sequence.
ACCESSION   DANHOL010000108 DANHOL010000000
VERSION     DANHOL010000108.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 7692)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7692)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7692
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.109"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            103..780
                     /locus_tag="PTC08_001770"
     CDS             103..780
                     /locus_tag="PTC08_001770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenine(22)-N(1))-methyltransferase TrmK"
                     /protein_id="HDK5683275.1"
                     /translation="MIPINKRLDKVSEFVRGEVLADIGSDHAFLPIYCIQKGTIQRAI
                     AGEVIKGPYQSALTNVTTHGYQEQIDVRLGNGLTILEPTDRADTVTICGMGGPLITRI
                     LTEGISYIPNQPRLVLQSNIQSEPIRRFLQQHGYRITTETLVKERAHIYEIIVADPGK
                     MQLSDRDFKFGPYLHPEPNALFVEKWERELEALADIKKQLDPDKHHHRYHEIEAQEND
                     IKEVLSQ"
     gene            777..1880
                     /locus_tag="PTC08_001771"
     CDS             777..1880
                     /locus_tag="PTC08_001771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Nif3-like dinuclear metal center hexameric
                     protein"
                     /protein_id="HDK5683276.1"
                     /translation="MKLHELLTTLNQEVPFDTAESWDNVGLLIGDKQSVVNGILTALD
                     CTLDVVEEAIDQNINTIIAHHPLIFKGVKHITEDGGYGSILYRLIQNNINLIALHTNL
                     DVHPKGVNAMLAKKLGLKNNELLDRQTTMYYKVQVFIPKENAQAFKDTLADHGMATEG
                     NYEYCFFNSEGEGQFKPVGEANPHIGQIGDIETVNELKIEFMIPGSQMTCVQKIIEAN
                     HPYETPVYDFIPMKKMSQYGLGMIGDLPEPQSVESFVQSVKKVLKMPSVRYIGNRDTT
                     IQRVAIVGGAGIGFENLAHQRGADLFITGDIKHHEALDAKMAGINLLDINHYSEYVMK
                     EGLVSLLQDWLADVSTQIPVIASSVHTDPYDYM"
     gene            complement(2034..3002)
                     /locus_tag="PTC08_001772"
     CDS             complement(2034..3002)
                     /locus_tag="PTC08_001772"
                     /EC_number="1.17.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-methylbut-2-enyl diphosphate
                     reductase"
                     /protein_id="HDK5683277.1"
                     /translation="MEIIKITPRGYCYGVVDAMVIARNASLDPNLPRPIYILGMIVHN
                     KHVTDAFESDGIITLDGPNRLEILDQINEGTVIFTAHGVSPEVKRRAKDKGLTCIDAT
                     CPDVENTHQLIRDKKAQGYHVVYIGKKGHPEPEGAVGVAPDIVYLVETKEDVEALPDT
                     LNDYPLIVTNQTTMSQWDVSHLMDDLQERFPHVEQHKEICQATQVRQEAVADQAGAAD
                     LLIVVGDPKSNNSNRLAQVSKDIAHTNSYRIADLSQLDLRWLKDVETVAVTAGASTPT
                     PIVKEVINFLKDYDPMKPETHVTASNVPVEKILPKIKKAKPVKIME"
     gene            3183..4517
                     /locus_tag="PTC08_001773"
     CDS             3183..4517
                     /locus_tag="PTC08_001773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HDK5683278.1"
                     /translation="MAKHPFDQFRFDSTLIEAITALNFKQPTEIQQRVIPKIMKQVNL
                     IGQSQTGTGKSHAFLLPLFQQIDPEIHEPQSIIVAPTRELATQLYQAATQLSEYKTGI
                     KVSLFIGGTDFEKDKQKTTVQPQLIIGTPTRINDLAKIGALHVHLAHYLVIDEADLMI
                     DLGLIEEVDQIAAKLDDDAKMAVFSATIPKSLHPFLNKYLEHPEFVEVKSETKNKKSI
                     EFYLIPTKGSQKIEKAVALFEMLNPYLAIIFCNSRDSANQLANELQHQGIQVGMIHGG
                     LTPRERKQQMKRIRNLEFQYVIASDLASRGIDIEGVSHVINFDVPKDIDFFTHRVGRT
                     GRGNYKGVAITLYTPEEDGLIAAIENKGYLFENVDIKDGEFKPIKAHNTRQLRQKQDD
                     HITQKVKHKVKRNTKKKVKPGYKKKYKQELEQLKRQEKRQFSRMKKRQSRKK"
     gene            4542..5435
                     /locus_tag="PTC08_001774"
     CDS             4542..5435
                     /locus_tag="PTC08_001774"
                     /EC_number="3.1.21.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribonuclease IV"
                     /protein_id="HDK5683279.1"
                     /translation="MLIGSHVSMSGKKMLEASAEEAHRYGASTFMIYTGAPQNTRRKA
                     IEELNIEAGHKAMERYNLSNIVVHAPYIINIANTQKPEVFELGVNFLQNEIERTEALG
                     AKDIVLHPGAHVGAGADVGIKRIIEGLNEVLTNQNDVRIALETMAGKGSEIGRTFEEI
                     AQIIDGVTHNERLSVCLDTCHIHDAGYDVINDFDGVLNEFDRIIGVDRIKVVHVNDSK
                     NPISAHKDRHENIGFGHIGFDALNYVVHHEQFENIPKILETPYVGEDKKNKKPPYRYE
                     IEAFKNETFDPNMKNKILSQA"
     gene            5620..6390
                     /locus_tag="PTC08_001775"
     CDS             5620..6390
                     /locus_tag="PTC08_001775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter ATP-binding protein"
                     /protein_id="HDK5683280.1"
                     /translation="MSQPVFELKNIDFFYEHKKVLENINIRIHHGQFLAIVGPNGAGK
                     STLLKLILGILPIQKGEIYIDGESYNKKLTTDKISYVSQKASSVTAGFPATVKEVVLS
                     GLTRRKKLFKWFSKEDDHKVDQVLERLNISTLKHKNIAQLSGGQQQRVLIARALVSDP
                     AVLVLDEPTNGIDAKHVGEFYETLNHLKQEGVTIILVTHDIGVVADTATDVACLNKHL
                     HFHGAVSEFKSLDEVEISKIYGHPIKFVDHKHDRDCCV"
     gene            6387..7274
                     /locus_tag="PTC08_001776"
     CDS             6387..7274
                     /locus_tag="PTC08_001776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HDK5683281.1"
                     /translation="MIDAILNFEFIRYSFISGILIGLIAPLIGTFIVVRRLSLIADAL
                     SHVTLGGISFGMFLITLSPLFAFVNPIWTGILFAIIGALLIEYLRTSYKNYQEIAIPI
                     IMSTGIGLSAIFISLAKGFNQELVGLLFGSISAVSISDLITIVTISVLVLAFIMLFYK
                     ELFILSFDTEYSQVIGIPKWIQFLFIVIVALVISASMRVIGVLLVSALITLPVAIAMR
                     WTKGFKQFILISIIIGEFSVIVGLVTAFYLNISPGGIIVVILVIMLGLTLFYQSFVTG
                     KLKGVKRNENGRSHSYIEK"
     gene            7237..7644
                     /locus_tag="PTC08_001777"
     CDS             7237..7644
                     /locus_tag="PTC08_001777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor"
                     /protein_id="HDK5683282.1"
                     /translation="MKMEEAIRILKNNGHKYTDKRRDMIEMFIKEDKYINAKTVQQQM
                     NNHYPGISFDTIYRNLHLFKILGIIEGTELDGEMKFRAACTSHHHHHFICTVCGDTKV
                     IDFCPMTEIKASLPNVEIEMHKLEVYGMCEKCK"
BASE COUNT         2562 a         1330 c         1482 g         2318 t
ORIGIN      
        1 atcattatta atggatttga gtccataaaa tagatagaga ctgggaaaac tcaatatccc
       61 ggtccctttt tattatgatt atcaatatga aggagaaaca tcatgattcc tattaataaa
      121 cgactggata aagtaagcga gttcgtgcga ggggaagtgc ttgcagatat tggttctgac
      181 catgcatttc tacccattta ttgcattcaa aagggcacga ttcaacgggc gattgctgga
      241 gaagtcatca aaggccctta ccaatctgca ttaacgaatg taacgacaca tggctatcaa
      301 gaacagattg atgtccgttt aggcaacggc ttaacaatat tagaaccgac agaccgcgcc
      361 gatactgtaa cgatttgtgg tatgggaggt ccactcatca cgcgtatttt aactgaaggg
      421 atttcatata taccgaatca accgagactc gtcctccaat ccaatattca aagcgaaccg
      481 attcgccgct ttttacaaca acatggctat cgcattacaa cagaaacttt ggtgaaagaa
      541 cgtgcacata tttatgaaat tatcgttgca gacccaggaa aaatgcaatt atctgacaga
      601 gactttaaat ttggtccata tcttcatcca gaaccgaatg cattgtttgt agaaaaatgg
      661 gagcgtgaac tcgaagcact agcagatatt aagaagcaat tagatcctga taagcatcat
      721 catcgttatc atgaaattga agctcaagaa aacgacatta aagaggtgtt atcacaatga
      781 aattacatga attgttaaca acattaaatc aagaagtacc gtttgatact gctgaatctt
      841 gggataatgt cggtttactc atcggtgata aacaaagtgt agttaacggc attttgacag
      901 cattagattg tacgttagat gttgtagagg aagcaataga ccaaaatatt aacaccatta
      961 tcgcacacca tcctcttatt tttaaaggtg tgaaacacat tacagaagat ggtggatacg
     1021 gttcgatttt atatcgtctc attcaaaaca atattaattt gatagcatta catacgaatt
     1081 tggatgtcca tccaaaaggc gtcaatgcga tgctagctaa aaagttgggc ttaaaaaata
     1141 atgaactatt agatagacaa acaacgatgt attataaagt tcaagtgttc attccaaaag
     1201 aaaacgcaca ggcttttaaa gatactttag ctgaccatgg tatggcgact gagggcaatt
     1261 atgaatattg ttttttcaat tctgaaggag agggtcaatt taagccagtg ggagaagcga
     1321 atccacatat tggacaaatt ggtgatattg aaacagttaa tgaattaaaa attgagttta
     1381 tgattcctgg cagtcaaatg acatgcgttc aaaaaattat tgaagctaat cacccatatg
     1441 aaacacctgt atacgatttt ataccgatga aaaaaatgag tcagtatggc ctcggcatga
     1501 taggcgattt accagaaccg cagtcagttg aaagttttgt tcaatcagtg aaaaaagtgc
     1561 tcaagatgcc aagtgtgcgc tatattggta atcgagatac gacaattcaa cgtgttgcaa
     1621 tcgtgggcgg tgcagggatt ggttttgaaa accttgcaca tcaacgcggt gcagatttgt
     1681 ttatcacagg agatattaag catcatgaag cgttagatgc taaaatggct ggaatcaatc
     1741 ttttagacat caaccattat agtgaatatg taatgaaaga aggcttagta tcactattgc
     1801 aagattggtt agcagatgta tcaacacaaa taccagtgat agcatcatcc gtgcacactg
     1861 acccttatga ttatatgtag ataaggacgt tcatttcggc atgattgact aaaagcaatg
     1921 atatgttcaa acgcttacca gaaaacttac attcaaaaag tttaaacagt aaaaagcctg
     1981 agatgcaaca tcccaggctt tttataatgc tcctttactc aattaaacgt gatttattcc
     2041 ataattttaa ccggcttagc ttttttaatt ttaggtaaga ttttttcaac cggcacgtta
     2101 gaggcagtga catgtgtttc aggtttcatt ggatcataat cttttaagaa attaattact
     2161 tctttaacaa ttggggtagg cgtagaagcc cccgccgtca ccgctacagt ttctacgtct
     2221 tttaaccaac gcaaatcaag ctgtgataag tctgcaatac ggtaagaatt tgtatgtgca
     2281 atatcttttg acacttgcgc gagacgattt gaattattac tttttggatc gcctacaacg
     2341 atgagtaaat ctgcagcacc tgcttgatct gcaactgctt cttgacgtac ttgtgtcgct
     2401 tggcaaatct ctttatgctg ctcgacatga gggaatcgtt cttgtaaatc atccattaaa
     2461 tgtgagacat cccattgcga catggttgtt tgatttgtca cgattaaagg gtagtcgttc
     2521 agtgtatcag gcaacgcttc cacgtcttct ttcgtttcca cgagataaac gatatcaggt
     2581 gcgacaccaa cagctccctc tggctcagga tgtccttttt taccaatata gacgacatga
     2641 tagccctgcg cttttttatc acgaatgagt tgatgggtat tttcaacatc tggacatgtc
     2701 gcgtcaatac atgtcagtcc tttatcttta gcacgtcttt taacttcagg tgatacacca
     2761 tgtgcagtga agataactgt tccttcatta atctgatcta atatttctaa acgattcggt
     2821 ccgtctaatg taataattcc gtctgattca aaggcatctg tcacgtgctt gttgtgcaca
     2881 atcattccta atatatatat cggacgtggt aagtttggat caagtgatgc attacgtgca
     2941 atcaccatcg catcgaccac gccataacaa taaccacgtg gggtaatttt aatgatttcc
     3001 attctgtaag cgaacctcct ttaataactc attataccaa ttacacagca gttttaaaat
     3061 taatacacaa ctagcgattt gtaaagtcaa ggacattaaa aaccaaaaac atttacttgt
     3121 atgttttcat taaccataaa ttcatttata atatagagac gaatctttaa ggaggccaaa
     3181 ccatggcaaa gcatccattt gaccaatttc gttttgattc aactttaatt gaagcaataa
     3241 cggcattaaa ttttaaacaa ccgacagaaa tacaacaacg tgttatccct aaaattatga
     3301 agcaagtcaa tcttattggt caatcacaaa cagggacagg taaatcacat gcatttcttt
     3361 taccattatt ccaacaaatc gacccagaaa ttcacgagcc acaatctatc attgtagcac
     3421 caacacgtga acttgccaca caattatatc aagcagctac acaattaagt gaatataaaa
     3481 cagggattaa agtgagtctg tttatcggtg gaacggattt tgaaaaagac aagcaaaaaa
     3541 cgacagtaca accccaatta attattggga caccgacacg tattaacgat ttggctaaaa
     3601 ttggtgcact ccacgttcat cttgcacatt atttagtcat tgacgaggcg gatttaatga
     3661 ttgacttagg tttaattgag gaagtcgatc aaatcgctgc aaaacttgat gatgacgcaa
     3721 aaatggctgt gtttagtgct accattccca agtcactaca tccattttta aacaaatatt
     3781 tagaacaccc tgaatttgtc gaagtgaaaa gcgagacgaa aaacaaaaag agtatcgaat
     3841 tttatctcat cccaactaaa gggtctcaaa aaatcgaaaa agcagttgca ttgtttgaaa
     3901 tgttgaatcc atacttagcg attatcttct gtaacagtag agatagtgcc aatcaacttg
     3961 ccaatgaact tcaacatcaa ggcattcaag tgggtatgat tcatggtggc ttaacgcctc
     4021 gtgaacgtaa acaacaaatg aaacgcattc gtaaccttga atttcaatat gtgattgcga
     4081 gtgatcttgc ttctcgtggt attgatattg aaggagtcag tcatgtcata aactttgacg
     4141 ttcctaaaga tattgatttc tttacgcacc gtgttggtcg tacaggcaga gggaattata
     4201 aaggtgtggc gataacactt tatacacctg aagaagatgg tttaatcgcg gctatcgaaa
     4261 acaaaggcta tctctttgaa aatgtcgata ttaaagatgg cgaatttaag ccaatcaaag
     4321 cgcacaatac acgacaattg cgtcaaaaac aggatgacca tattactcaa aaagtaaagc
     4381 ataaagtaaa gcgcaatacg aaaaagaaag taaaaccagg ctataagaag aagtacaaac
     4441 aagaactcga acaactgaaa cgccaagaaa aacgtcaatt tagtcgtatg aaaaagcgtc
     4501 aatctcgaaa aaaatagttc attaaaaagg ataggataaa tatgttaatc ggatcacatg
     4561 tgtctatgag tggtaaaaaa atgttagaag catcagcaga agaagcacat cgatatggcg
     4621 cttcaacgtt tatgatttat acaggtgcac ctcaaaacac acgtcgtaaa gcgatagaag
     4681 agctgaatat cgaagcaggt cataaagcga tggaacgtta caatctttca aatattgtcg
     4741 tgcatgcgcc ttatattatt aatatcgcga atacgcaaaa gccagaagtg tttgaattag
     4801 gtgttaactt tttacaaaat gaaattgaac gtactgaagc gcttggtgca aaagatattg
     4861 tgttacatcc aggtgcacat gtcggcgctg gagctgatgt gggcattaag cgtattatcg
     4921 aagggttaaa tgaagtttta acgaatcaaa acgatgtcag aatcgcatta gaaacgatgg
     4981 caggtaaagg ctcagaaatc ggtagaactt ttgaagaaat cgcacaaatc attgatggtg
     5041 taacccataa tgaacgctta tctgtttgtc tcgatacgtg tcatattcac gacgcgggct
     5101 atgatgtcat caatgatttt gatggtgttt taaatgaatt cgaccgtatt attggtgtcg
     5161 accgtattaa agttgtccac gttaacgata gtaaaaatcc gatatcagca cataaagacc
     5221 gtcatgaaaa tatcggtttt ggacatatcg gatttgatgc attaaattac gtggtacatc
     5281 atgaacaatt tgaaaatatc cctaaaattc tagaaacacc atatgtgggt gaagacaaga
     5341 aaaataaaaa gccaccgtat cgttatgaaa ttgaagcatt caaaaatgaa acgtttgatc
     5401 caaatatgaa aaacaaaatt ttatcacaag cataatcaaa tttttaaaac agctgtacct
     5461 caaaaggggt atggttgttt ttattttcac aacatcagct acacttgttt tctcacttta
     5521 aacccattca aattgtggta taatgataaa gtcttatcgt aaacgttact atttacattt
     5581 ccgtataggc gcgttatagt tagaaattga ggtgaaaaaa tgtcacaacc tgtattcgaa
     5641 ctcaaaaata tagatttctt ttacgaacat aaaaaagtgc tagaaaatat taatattcgt
     5701 attcatcatg gccagttttt agctattgtc ggtccgaatg gggcaggtaa atcaacgctc
     5761 cttaaattaa tattaggcat tttacccatt caaaaaggtg agatttatat tgatggtgaa
     5821 tcttacaata agaaattaac gactgataaa attagttatg tgtctcaaaa agcatcgtcc
     5881 gttactgcag gttttccagc aaccgtgaaa gaggttgtat tgagtggtct tacacgtagg
     5941 aaaaagctgt ttaaatggtt tagtaaagaa gacgatcaca aagtggacca agtattagaa
     6001 aggctgaata tctcaacatt aaaacataaa aatatcgcac agctttctgg tggtcaacaa
     6061 caacgcgtat taatcgcacg tgcattagtg tctgatcctg ctgtactcgt tttagatgaa
     6121 ccgacgaatg ggatcgatgc caaacatgta ggtgagtttt atgaaacatt aaatcatctc
     6181 aaacaagaag gtgtgacgat tattctcgtg acacatgata tcggtgtcgt tgccgataca
     6241 gctactgatg tggcttgttt aaataagcat cttcacttcc atggcgcagt cagtgaattt
     6301 aaatcattag atgaagtaga aatatcaaaa atctatggtc accccattaa atttgtagac
     6361 cataaacatg atagggattg ttgtgtatga ttgatgcaat attaaatttt gaatttatca
     6421 gatactcatt tattagtggg atactcattg gcttgattgc accactcatc gggacattta
     6481 tcgtggtgag gcgtctctca ttgattgccg atgcattgag tcacgtcacg ttaggcggta
     6541 tttcattcgg gatgttttta attacacttt ctccgctatt tgcattcgtt aatccaattt
     6601 ggacagggat tctatttgcg ataattggtg cactgctcat tgaatatttg agaacttcat
     6661 ataaaaatta tcaagaaatt gcgataccga ttattatgag tacaggtatt ggtttaagtg
     6721 ctatttttat ttcgttggct aaagggttta accaagaact tgtcggttta ttgttcggtt
     6781 caatcagtgc ggtatccatt agtgatttaa ttactattgt aaccatctct gttttagtgt
     6841 tagcgttcat tatgttgttt tataaagagt tgttcatcct gtctttcgat acagaatata
     6901 gccaagtgat tggcattccg aaatggatac aatttttgtt tattgttatt gtcgcacttg
     6961 ttatttctgc atcgatgcgt gtcattggtg ttctgttagt gagtgcactc attactttac
     7021 ctgttgctat tgcaatgcgt tggacaaaag ggtttaaaca atttatatta ataagtatca
     7081 ttatcggaga gttttcagtt attgtagggc tagttacagc gttttattta aatatctcac
     7141 ctggtggaat catcgtagtt attttagtca tcatgttagg tttaacactt ttctatcagt
     7201 cctttgttac tgggaagcta aaaggagtga agcgtaatga aaatggaaga agccattcgt
     7261 atattgaaaa ataatgggca taaatataca gataaacgtc gagatatgat tgaaatgttt
     7321 atcaaagaag ataaatatat taatgcaaaa acagtgcaac aacaaatgaa caaccattat
     7381 ccaggaattt catttgatac gatctatcgt aatctccatc tatttaaaat tttggggatc
     7441 attgagggaa ctgagttgga tggagaaatg aaattccgtg cggcatgtac gtcacatcac
     7501 catcatcatt ttatttgtac tgtttgtggt gatacgaaag tcattgattt ttgtccaatg
     7561 acagaaatta aagcatcatt gcctaatgta gagattgaaa tgcacaaatt agaagtatac
     7621 ggtatgtgcg aaaaatgtaa ataataaaaa gcactcaatg tagcatgaag aaacattgag
     7681 tgctttttta at
//
LOCUS       DANHOL010000109         7612 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.110, whole genome shotgun sequence.
ACCESSION   DANHOL010000109 DANHOL010000000
VERSION     DANHOL010000109.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 7612)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7612)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7612
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.110"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            391..1377
                     /locus_tag="PTC08_001778"
     CDS             391..1377
                     /locus_tag="PTC08_001778"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HDK5683283.1"
                     /translation="MTKLAVVGATGLVGTKILETLDRKGIAFDELVLFSSARSAGQEV
                     TFQGQTYIVQELTDEATDGDFDYVLMSAGGGTSAHFAPLFESHGAIIIDNSSQWRMTE
                     DVDLVVPEVNAPTFKRGIIANPNCSTIQSVVPLKPLQEKYGLKRVAYTTYQAVSGSGM
                     KGKKDLEDGPKGVAPQAYPHPIYNNVLPHIDVFLDDGYTKEEQKMIDETRKILNEPTL
                     NVTATCVRVPVQDSHSVHMNVTLDQPATVEAIQALFEQDARVVLVDNPAKNEYPMAIH
                     STGRDEVFVGRIRKDDSLDNTFHIWVTSDNLLKGAALNAVQVLEQVLQLKGA"
     gene            1381..2259
                     /locus_tag="PTC08_001779"
     CDS             1381..2259
                     /locus_tag="PTC08_001779"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011303134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate synthase"
                     /protein_id="HDK5683284.1"
                     /translation="MSHIFEGTGVALITPFSNGEVDYEAIKRQVHFLIDNHIQSIVVN
                     GTTAENPTLTDEEKDRILTTVIEENAQRVPIIVGTGTNNTQKSIEASLRAKALGADAI
                     MLITPYYLKTSQRGLVAHFEAIANATELPVVLYNVPSRTNSTIEVDTVVRLSENPYIV
                     ALKDATNDFNYLAELQQRLDTDKFALYSGNDDNIVSYYEQGGHGVISVVANVIPNEFQ
                     QIYTNVKDRVARFEPIATLLDAMSVDINPIPIKYLAALEGFGQYEVRLPLVPLNNEEQ
                     QQLKAVYHQFKAGVQT"
     gene            2256..2978
                     /locus_tag="PTC08_001780"
     CDS             2256..2978
                     /locus_tag="PTC08_001780"
                     /EC_number="1.17.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011275807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate reductase"
                     /protein_id="HDK5683285.1"
                     /translation="MKILLIGYGAMNQRVARLAEANGHNIVGVIAGRSTAHVPYPIYQ
                     KISEVTEADVAIDFSHPQLLLPLLEEDFTLPLVIATTGEKTQITDKLQALSDKMPVFF
                     SANMSYGVHVLTKILEAAVPLLQDFDIELTEAHHNQKVDAPSGTLVKLYDVIESLRQD
                     VTPVYDRSQYDAKRTKNEIGIHTVRGGTIVGEHDVLFAGTDETITLSHRAQSKDIFAN
                     GALGAAEKLIHRQPGYYTFDNL"
     gene            2998..3717
                     /gene="dapD"
                     /locus_tag="PTC08_001781"
     CDS             2998..3717
                     /gene="dapD"
                     /locus_tag="PTC08_001781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
                     N-acetyltransferase"
                     /protein_id="HDK5683286.1"
                     /translation="MVKNFTAEEIIQYISDAKKATPIKVYINGEFSDVQFPDQFKVFG
                     SENSKVIFCEASDWHAFYEENQMLIEDLEIEMDRRNSAIPLKDLINTNARIEPGAFIR
                     EHAVIGDGAVVMMGATINIGAIVGEGTMIDMNATLGGRATTGKNVHVGAGAVLAGVIE
                     PPSASPVVIEDNVLIGANAVILEGVRVGEGAIVAAGAIVTQDVPAGAVVAGTPAKVIK
                     QAHEVEDSKREIVAALRQLDQ"
     gene            3902..5056
                     /locus_tag="PTC08_001782"
     CDS             3902..5056
                     /locus_tag="PTC08_001782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011303131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HDK5683287.1"
                     /translation="MNELEFVTQHRRYLHQHPELSLQEHETTQYLQRFLESLDIPYER
                     PLETGIIGFLKGQSDETIAFRADIDALPIHEQNDVDYRSTVDDRMHACGHDGHTTALM
                     LFAQRCKALYDNDELPHNVLFIFQPAEESGGGANLLIKANAFASYDIKAIYGVHVMPF
                     VEEGSVVIRDNEITASATEFRFFIEGESSHVANKEQGQSAGEALQHIMMQLSQIQQYH
                     LNGLQRNIVHIGHFHAGEAINTVPSNGYLEGTIRTYDMDDLSIIQGQMQKISDSAELL
                     FGVKSEVRFAEGYPPTINDPALKKYVIESLEYNQLNVIENELPYLFGEDFSFYGRIAP
                     AYFVFVGIRNEEKQFVTGLHTPHLNFDERMLIRIADYYERLLMNYNEVEA"
     gene            5053..6132
                     /gene="alr"
                     /locus_tag="PTC08_001783"
     CDS             5053..6132
                     /gene="alr"
                     /locus_tag="PTC08_001783"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000127604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HDK5683288.1"
                     /translation="MTALWQVDSAQFLQNVKQVTQNQSVMAVVKNNAYNYGLDFAVQM
                     FQQAGIDTFSTTSLVEAVRIRELAPEATIFLMNATDEFERLRANDIHMTLPSLTFYRE
                     NKAALAGVKVHLEYENLLHRSGFKTKDELLAVLADHEQNPAPKMEITGLWTHFGYADE
                     FDVDMYEKEREAWLTIVETLVKQRGYHFDLIHAQNSASYYREGQRVFDHHTHARIGIA
                     LYGSRPYASLSPGCITQALTVKANVIQVRNVQQGDHCGYSFAYTVEQPHTRLAVVDVG
                     YGDGILRTRAQHDVSINGKRYPIRALMMSHMFVEVDDTVSAKDSVILYNNSDLRIDDY
                     TFKGVGANSEQLSALNLNSLIKEYV"
     gene            6133..7398
                     /gene="lysA"
                     /locus_tag="PTC08_001784"
     CDS             6133..7398
                     /gene="lysA"
                     /locus_tag="PTC08_001784"
                     /EC_number="4.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate decarboxylase"
                     /protein_id="HDK5683289.1"
                     /translation="MTVSYNQNGELTLGGTSLKTLAQSFGTPTIVYDEAQIRQQMRRY
                     HSAFQQNDIGYVLSYASKAFTCLQMVKLAAEEDFELDVVSEGELYTALEAGFDPQRIH
                     FHGNNKTKHEIRYALESGIGYFVVDALDEIDLIEQYATKPVDVLLRVNPGVEAHTHEF
                     IQTGQEKSKFGLSLKHGLALEAVEKIRNTNNIVLKGIHFHIGSQIEETTGMIETAKMV
                     LNWLDEHAITIDLLNLGGGFSAQYVEGDQSFDIEAGITEIVQAIKAECQQLKYPIPTL
                     SIEPGRSIVAEAGVTLYEVGTIKDIPGVNKYVSIDGGMSDHIRTALYDAKYQALLINR
                     NETPDETVTIAGKLCESGDIIIHEAKLPSSVKRGDYLAILATGAYHYSMASNYNQMQK
                     PSVFFVKDGKAREVVKRQSLRQLIINDVK"
BASE COUNT         2422 a         1342 c         1659 g         2189 t
ORIGIN      
        1 ttgaatagtt attgatgagg cgcatcgatc ataagtagat atattgaagt catgtctgca
       61 aacattgtat atcgaaaggg tgagatgccg aaacgaacag tattgcaggt acttgtttgt
      121 tggattctct ggttaagagc taagaatctg tcattattgt tacaataatg gagtgcatca
      181 cttgtatata gagttgacaa gttcgcacgc cgagcttgtt ttttatttat catttttgaa
      241 gcggtctgga tatcagtgat atttgccctc ttcaacaagt gctctagtaa tcaacatcaa
      301 gtgccaatct gtactaccaa tagttcaatt attatctaaa ttttaagaac attacaatat
      361 ttgtgaattg aaaaaatgga gtgaagtgga atgacaaaat tagcagttgt aggtgcaaca
      421 ggattagtag gaacaaagat tttagaaaca cttgatcgta aaggtattgc ttttgatgaa
      481 ctcgtgcttt tttcttcagc acgttcagca ggtcaagaag tcacgtttca aggtcagacg
      541 tatatcgtgc aagaattgac agatgaagcg acggatggtg attttgatta cgtcttaatg
      601 agtgcaggtg gcggtacgag tgctcatttt gccccactgt ttgaatcaca cggtgccatc
      661 attattgata attcaagtca atggcgcatg acggaagacg ttgaccttgt cgtacctgaa
      721 gttaacgccc ctacttttaa aagaggtatt attgctaacc caaactgttc aacgattcaa
      781 tcggtcgtac cactgaaacc attgcaagaa aaatatgggt taaaacgtgt ggcatacacg
      841 acttatcaag ctgtatcggg gtcaggtatg aaaggtaaaa aagacttaga agacggtcca
      901 aaaggtgtgg cgcctcaagc ttatccacat ccgatttata acaacgtact acctcatatt
      961 gatgtctttt tggatgatgg ttatacaaaa gaagaacaaa aaatgattga cgaaacaaga
     1021 aagattttaa atgagccgac tttaaatgtc acagcaactt gtgtacgtgt accggtacaa
     1081 gatagtcata gcgttcatat gaatgtgacg ttagaccaac cggcaacagt ggaagctata
     1141 caagcgcttt ttgaacaaga tgcgcgtgtt gtcctcgtag ataacccagc caaaaatgaa
     1201 tatccaatgg cgattcattc aacaggtcgt gatgaagtgt ttgtcggacg cattcgtaaa
     1261 gacgattcgt tagacaatac attccacatt tgggtcactt cagacaattt attaaaaggt
     1321 gctgcgctta atgcagtcca agtgttagaa caggtacttc aattgaaagg agcataaatt
     1381 atgtcacata tttttgaagg cacaggcgtc gctttaatca cccctttttc gaacggtgaa
     1441 gtggattatg aagcgatcaa aagacaagtt cattttttaa tcgacaatca tattcaatcc
     1501 atcgtggtta atggcacgac ggctgaaaat ccaactttga cagatgaaga aaaggatcgt
     1561 attttaacaa cagtaataga agaaaatgca caacgtgtcc ctattattgt aggaactggg
     1621 acgaataaca cgcaaaaatc aattgaagcg tcattacgtg caaaggcatt aggtgcagat
     1681 gcgattatgc tcatcacacc gtattactta aaaacgagtc agcgtggttt agttgcccat
     1741 tttgaagcca ttgcgaatgc gacagaactg cctgtagtcc tttataatgt gccatcaaga
     1801 acaaactcaa caatcgaagt ggatacagtc gttcgtttaa gtgagaatcc atatatcgtt
     1861 gcgttaaaag acgcgactaa tgattttaat tatttagcag aacttcaaca acgcttagat
     1921 acagacaagt tcgcattgta tagtggcaac gatgataata ttgtgtcata ttatgaacaa
     1981 ggtggtcatg gtgtcatttc ggtcgttgcg aatgtcatcc cgaatgaatt ccaacaaatt
     2041 tatacaaatg tgaaggatcg agtagcgcgc tttgaaccga ttgccaccct tcttgatgcg
     2101 atgagtgtcg atattaatcc tattccaatc aaatatttgg cagcgttaga aggctttggg
     2161 caatatgagg tgcgattgcc tttagtacca ctgaataatg aagagcaaca acagttaaaa
     2221 gcagtttacc atcaatttaa agcaggtgtt cagacatgaa aattttatta attggatatg
     2281 gcgcaatgaa ccaacgtgtc gcgcgattag ctgaagcgaa cggtcataat attgtaggcg
     2341 tcattgcagg tcgttcaacg gcgcatgtgc cctatccgat ttaccaaaaa atcagtgaag
     2401 tgacagaggc agatgttgcg attgactttt cacatccaca attgttactg cctttactag
     2461 aggaagattt cacactcccc cttgtcattg caacaacggg tgaaaagaca caaattactg
     2521 ataaacttca agcgttaagt gataaaatgc cagtattttt cagtgctaat atgagttatg
     2581 gtgtccatgt actcaccaaa atattagaag cggcagtccc tttactgcaa gactttgaca
     2641 ttgaattaac agaagcacat cataatcaaa aagtggatgc gccaagtggc acgctcgtta
     2701 aactttatga tgtgattgaa tcgttacgac aagatgtcac acctgtttat gacagaagtc
     2761 aatacgatgc gaaacgtacg aaaaatgaaa ttggtattca tacggtgcgt ggaggtacga
     2821 ttgtcggtga acacgatgtc ttatttgctg gaacagatga aacgattaca ctgtctcacc
     2881 gtgcccagtc aaaagatatt tttgcgaatg gtgcgttagg tgcagcagaa aagttaattc
     2941 accgtcaacc agggtattat acttttgata acttataaaa ggagcgtata aaacgttatg
     3001 gttaaaaatt ttacagctga agaaatcatc caatatatta gtgatgcaaa aaaagctaca
     3061 ccgattaaag tttatatcaa cggtgaattc agtgacgtgc aatttccgga ccaatttaaa
     3121 gtatttggtt cagaaaattc aaaagtcatt ttttgtgaag catcagattg gcacgcattt
     3181 tatgaagaaa atcaaatgct aattgaagac ttagaaatcg aaatggaccg ccgtaattcg
     3241 gccattccat taaaagactt aatcaatacg aatgcacgaa tcgaaccagg cgcatttatt
     3301 cgtgaacatg ccgtgattgg agacggtgca gtcgtcatga tgggtgcaac gattaatatt
     3361 ggtgccattg ttggtgaagg cacaatgatt gatatgaatg cgacattagg tggtcgtgca
     3421 actacaggta aaaatgtcca cgtcggtgct ggtgcagtat tagcaggtgt aattgaacct
     3481 ccaagtgcct ctcctgttgt cattgaggat aacgtattaa ttggagcgaa tgccgttatt
     3541 cttgaaggcg tacgtgtcgg tgagggtgcg attgttgctg cgggtgccat tgtgacgcaa
     3601 gatgtgccag caggtgctgt tgttgcgggg acaccggcga aagtgatcaa acaagcgcat
     3661 gaagtagaag attcaaaacg tgaaattgtc gcagcgttac gtcagttaga tcagtaatat
     3721 atatgggcgt cctatcatat ctcttatcgt cggcgtccaa cgttggcgat gaaacctcaa
     3781 actgattgta tttaataact tatgtattct gtttgagtat cttctaccga ggatgaacat
     3841 aatgctaaat ttatgactca tcctcttctc tttttataca taatgatggg agtgaaagca
     3901 tatgaatgaa cttgaatttg tcacgcagca tcgtcgatac cttcatcaac atcccgagct
     3961 gagtcttcaa gaacatgaaa caacacaata tttacaacgt tttttagagt cattagatat
     4021 tccttatgaa cgccctcttg aaacgggcat tataggtttt ttaaagggtc aaagtgatga
     4081 aacgattgct tttagagcag atatcgatgc cctaccgata catgaacaaa atgatgtgga
     4141 ctatcgtagt acagtagatg atcgtatgca tgcttgtggc catgatggtc atacgactgc
     4201 gctgatgcta tttgcacaac gttgtaaagc gttatatgac aacgatgaat tgccacataa
     4261 tgtattattt atttttcaac ctgctgaaga atcaggtggt ggtgcgaatt tattgattaa
     4321 agcgaacgca tttgcatcat atgacattaa agcaatctat ggtgttcatg tcatgccttt
     4381 tgtcgaagaa ggctctgtag tcattcgtga taatgaaatt acggcaagtg cgacagaatt
     4441 ccgctttttt attgaaggtg aatcgagtca tgttgccaac aaagaacaag gtcaatctgc
     4501 gggagaagcg ttacaacaca tcatgatgca attgtctcaa attcaacagt atcatttgaa
     4561 tgggctgcaa cgaaatatcg tccatatcgg tcattttcat gcaggagaag cgattaatac
     4621 agttccaagc aatggttact tagaagggac gattcgcacg tatgatatgg atgatttaag
     4681 tatcatacaa gggcaaatgc aaaaaattag tgacagtgca gaattgttat tcggcgtaaa
     4741 gtctgaagta cgctttgcgg aaggttatcc accgacaata aatgatcctg cattaaaaaa
     4801 atatgtcatc gaaagccttg aatacaatca actcaatgtc atcgaaaatg aactgcccta
     4861 cttatttggt gaagacttca gcttttatgg tcgaatcgca ccggcgtatt tcgtttttgt
     4921 cgggatacgt aacgaagaaa agcagttcgt gacaggttta cacacaccac atttgaactt
     4981 tgatgaacgc atgttgattc gtattgcaga ttattacgaa cgcttgttaa tgaactataa
     5041 tgaggtggaa gcatgacagc attatggcaa gtcgattcag cccaatttct tcaaaatgtg
     5101 aaacaagtaa cgcaaaatca atctgttatg gcggttgtga aaaataatgc gtacaattac
     5161 ggtttggatt ttgccgtaca aatgtttcaa caagcaggta ttgacacgtt cagtacgacg
     5221 tcgttagttg aagcggtacg tatccgagaa cttgcgccag aagcaacgat atttttaatg
     5281 aatgcgactg atgaatttga acgcttgaga gcgaatgata tccatatgac gttgccttcc
     5341 ttaacgtttt atcgtgaaaa taaagcagct ttagcgggtg tgaaagtgca tctagaatat
     5401 gaaaatctac tccatcgttc tggctttaaa acaaaagatg aattactggc cgttttagct
     5461 gatcacgagc aaaatccggc acctaagatg gaaattactg gtttgtggac acatttcggt
     5521 tatgcagatg agtttgatgt cgacatgtat gaaaaagaac gtgaggcatg gttgactatt
     5581 gtggagacac tcgtgaaaca acgagggtat catttcgacc tcattcatgc tcaaaacagc
     5641 gccagttatt atagagaagg tcaacgtgta tttgatcatc atacgcatgc acgtatcggt
     5701 attgcgttat atggttcacg cccgtacgct agcttgtcac ctggttgcat tacacaagca
     5761 ttgacagtaa aagcaaatgt gattcaagtg cgaaatgtcc aacaaggcga tcactgtgga
     5821 tacagttttg cttatactgt tgaacaaccg catacacgtt tagcggttgt agatgtcgga
     5881 tatggggatg gcattttaag gacaagagca caacatgacg tttcaatcaa tggcaaacgt
     5941 tatccgattc gtgcgctcat gatgagtcat atgtttgttg aagtagatga cacagtatca
     6001 gcaaaagata gcgtcatttt atataataat tcagatttgc gtattgatga ttacacgttc
     6061 aaaggtgtcg gcgcaaactc tgaacaactc agtgcattaa atttgaattc gttaataaag
     6121 gagtatgttt aaatgacagt tagttataat caaaatggtg aattgacatt gggaggaaca
     6181 agtttaaaaa cgttagcaca aagtttcggt acgccgacaa ttgtgtatga tgaagcgcaa
     6241 attcgtcaac aaatgagacg ctatcacagt gcttttcaac aaaacgatat cggctatgtg
     6301 ttatcttatg catcaaaagc atttacttgt cttcaaatgg taaaacttgc ggctgaagaa
     6361 gatttcgaat tggacgtcgt atcagaggga gaactttaca cagcattgga ggcaggattt
     6421 gacccccaac gcatccattt tcatggcaac aataagacaa aacatgaaat tcgttatgcc
     6481 cttgaaagtg gtatcggtta tttcgtcgtt gatgcgttag atgaaattga cctcattgaa
     6541 cagtatgcca caaaacctgt agatgtactg ttacgtgtga atccaggtgt tgaagcgcat
     6601 acacatgaat ttatccaaac aggacaagag aaaagtaaat tcggtctttc attaaaacat
     6661 ggtcttgctt tggaagcagt tgaaaaaatc cgtaatacta ataatatcgt gttgaaaggt
     6721 attcatttcc atatcggttc acaaattgaa gaaacaacag gtatgatcga aacggctaaa
     6781 atggtgttga attggttgga cgaacatgcg attacgatcg atttactcaa cttaggtggt
     6841 ggctttagtg cacaatacgt tgagggtgac caatcattcg acattgaagc aggtattaca
     6901 gagattgtac aagcgattaa agcagaatgt cagcaattga aataccctat accaacattg
     6961 agtatcgagc cgggccgttc tatcgttgca gaagcgggtg taacgctata tgaagttggt
     7021 acgattaaag atattcctgg tgtcaacaag tatgtatcta tcgatggcgg tatgagcgat
     7081 cacatccgta cagctttata cgacgcgaaa tatcaggcgt tattaattaa tcgtaatgaa
     7141 acacctgatg aaacagtaac catagcagga aaactatgtg aatcaggtga tattattatc
     7201 catgaagcaa agttaccgtc tagtgtaaaa cgaggtgatt atttagcaat attagcgaca
     7261 ggtgcgtatc attacagtat ggcttcgaat tataaccaaa tgcagaaacc aagcgtcttc
     7321 tttgtgaaag atggtaaagc aagagaagtc gtgaaacgtc aatcgttacg ccaattgatt
     7381 attaatgatg tgaagtaagt actatttatg atatgaaagc cataaatgat tgattcgtta
     7441 gataaacgct tttgacatac tgatttgcga taaagtaatt ataaaaaaag agcacctcgc
     7501 ctttttatcg gttaggtgct tattcgagtt taactccaaa cgttaaatat tcaaacgctt
     7561 catctgttaa ttctgaaaac ccttctgctg ggttaaatgt ttcaatcgag tc
//
LOCUS       DANHOL010000110         7566 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.111, whole genome shotgun sequence.
ACCESSION   DANHOL010000110 DANHOL010000000
VERSION     DANHOL010000110.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 7566)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7566)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7566
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.111"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            112..798
                     /locus_tag="PTC08_001785"
     CDS             112..798
                     /locus_tag="PTC08_001785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF805 domain-containing protein"
                     /protein_id="HDK5683290.1"
                     /translation="MNLETPKVGFVEAFKLYWTNYVNFKGRSRRSEYWWVMLWHLIIT
                     IPALFLGVVLMFIPVLGWIVAVILFLAIGLYGLATIIPNLALTVRRFHDVGFSMLIPI
                     LSFIVGIIYNIASAFTQKETLYQNTSTGTDVSIISEFAFLPNWIAYTLMAISIILSLV
                     TFIVCLLDSKEQDNQYGPSPKYGRQYVGDDRNLGSMAYQQSHRNDTMTRQGEPRDIEE
                     TEKKDDPYLY"
     gene            1080..1970
                     /locus_tag="PTC08_001786"
     CDS             1080..1970
                     /locus_tag="PTC08_001786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDK5683291.1"
                     /translation="MSLKIEQVTKKFGQFTAVNQISFELEKGKMLGFLGRNGAGKTTT
                     FRMILGLSEPTEGRITYNGRVINHTMYNHIGYLPEERGLHPKLTVTEELTYLATLKGM
                     DKPAIRKAIDYWLERFKITENRHKKIEALSKGNQQKVQLLASMLHEPELLILDEPFSG
                     LDPVNVELLKQAVKDLNAQGTTIIFSSHRMEHIEELCDALCILKRGEMVVQGDIPSVK
                     ASVGYKRVVVDAPYDLSEVASLPGVLHHKVVKTENSFTVTDETVAEAIFEVVQQKGYA
                     KRFQLMEPTMNEIFIEKVGD"
     gene            1972..3216
                     /locus_tag="PTC08_001787"
     CDS             1972..3216
                     /locus_tag="PTC08_001787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDK5683292.1"
                     /translation="MRKFAATFKLTYFKKLKARSFIVSTLIMMLIITGAANFDKIIKQ
                     FDGGSENVAIVTQDNTLYQQVKEQMATINKDVHYEKLSEDEAKKQIKQEKIDQAYVIH
                     EDKQHALTGTILSTSSPSDSDKGTLQAILTQLQTQKIAQDLGLQGDDLQRLQSQSQID
                     NTIIQKAGQENSSASEDEQDFAKIIAMLGTFLMFFIVFNYAQQIATEVATEKTSRVSE
                     MIITSVKPTTHIMAKIAGVLALAFTQIVILALTFVANYIIFDLQSMFGSVNLTLTSHL
                     TRLIVFGVIFLILGILSFVILAAILGNLTARIEDLAQSLMPMTFLILAAFYAGYFGSF
                     NPDNVFIHIMSYVPFFSPFVTFSRLALTTTPTFEAIIAVIIHIVLIGVLLFLAAKSYK
                     NAVLSFEKGWKNVLKRAFQREQ"
     gene            3369..3701
                     /locus_tag="PTC08_001788"
     CDS             3369..3701
                     /locus_tag="PTC08_001788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YnfA family protein"
                     /protein_id="HDK5683293.1"
                     /translation="MNFLYSTAIFIIAGLCEIGGGYLIWLWLRADRPFWLGWVGGIVL
                     ILYGIVATFQTFPTFGRVYAAYGGVFIVMSLLWAYWIDKEPPDKFDIIGGVVCIIGVL
                     IMVLPARG"
     gene            3736..4761
                     /locus_tag="PTC08_001789"
     CDS             3736..4761
                     /locus_tag="PTC08_001789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose mutarotase"
                     /protein_id="HDK5683294.1"
                     /translation="MNINIEQQSNGIELIKIENKESKIVFMNYGARIVSWKIGDNNIV
                     LGNEVEADEFYPHNPFYFGATVGRFGGRIAKGQFELNGQTYQLEQNDGDNHLHGGLQG
                     LSNRLFDYEIIESETEESAQVYFTTTVKQDEDHYPGNIDIKVVFTYDASKTWTVEYFA
                     ESDADTLFNPMNHVYFNLNRDNKVVDNHVIASEKLQMFPLDASGMPVLEPVDLTAIMG
                     SHEIELATLFNTGDVHIQQQVTTRGGLDHPFEVKDGKMTISNRDLVLHVETDAPQIVM
                     YTLNDSEDWKSRMNIFKPHSGITIETQSIPNDINLLGTSAHSVLKAHTPFYSKTSYHV
                     ELKPRNA"
     gene            complement(4833..5492)
                     /locus_tag="PTC08_001790"
     CDS             complement(4833..5492)
                     /locus_tag="PTC08_001790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002466553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MOSC domain-containing protein"
                     /protein_id="HDK5683295.1"
                     /translation="MNYAIYAISTGKIESLQYEDRRPMKSALNKKPIQEKMWLSRTGF
                     LEDEQEYKDHGGPDKAVCLYSKSNYAMWQDVIQPLPDSALFGENITVYAIDETELFFG
                     DQYRLGEAIIEVSEIREPCWKLQSKYGYSQLVKDMSKSGKTGCYFRVIKEGFVSPNSN
                     LSLVQHAPEPTRLSVQELNDIYYNDRKNKERIAYALNNPYLTEKRKSVLEKMLAQATM
                     K"
     gene            5618..6313
                     /gene="rpiA"
                     /locus_tag="PTC08_001791"
     CDS             5618..6313
                     /gene="rpiA"
                     /locus_tag="PTC08_001791"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose 5-phosphate isomerase A"
                     /protein_id="HDK5683296.1"
                     /translation="MSNKQLKLMTLDEAVSRIEDGMTVGIGTGSTVELLVPKIAGLIH
                     EKGYQLIGVSTSERTENQAKSLNIPIAHINDVQHIDIAIDGADEIDPKLNLIKGGGGA
                     LFREKVVDTFADRFIVIADQSKLVDYLGQTFKLPVEVDRFNWKQVAQLIEKKYEIEVT
                     RRMMEHTPFITDNGNYILDCALNREIDPYQVHEFLIHLVGVLETGYFLDTVEEAIVGT
                     EQGVKLIKLSDIK"
     gene            complement(6423..7352)
                     /locus_tag="PTC08_001792"
     CDS             complement(6423..7352)
                     /locus_tag="PTC08_001792"
                     /EC_number="3.5.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formimidoylglutamase"
                     /protein_id="HDK5683297.1"
                     /translation="MYQKPNQKLWTGRLDSEIDRQAFRHFQTVQFVDLEHEAPQDGDI
                     ALLGYAIDEGVRLNKGRVGASEGPDAIKSAFAGLPASTDLNIIEYGNWTHSAEDLITS
                     QQAYGHYVAQLLRHHHRTFLLGGGHDIAYAQYLGVREAYPEQSIGVINIDAHFDNRQE
                     GYSTSGTSFHQMLTEDEHLDYFVLGIQRTSNTQALFDFADKTNTQYVLAEELMGQICP
                     PVKDKLDHFINQHDVILFTICMDVIDSAYAPGVSANAVLGLTPYTVLELGRRILQSDK
                     VTSISIAETNPKYDIDQRTAKLAAHFLGHFIHC"
BASE COUNT         2399 a         1253 c         1581 g         2333 t
ORIGIN      
        1 tcatacgatt taacttggcg gataaaatga taaaaaatga ttaatatact atagcaataa
       61 aagtagagta tggtagacta gaagagaact acaacttatt taaggaggtc aatgaatttg
      121 gagacaccta aagtaggatt tgttgaagca tttaaattat attggacaaa ctatgtgaat
      181 tttaaaggga gaagtcgtcg gagtgagtat tggtgggtca tgttatggca tctcatcatt
      241 acgataccag cgttattttt aggtgtggtt ttaatgttta ttccggtttt aggttggatt
      301 gttgcagtca ttttgtttct cgctattggc ctatatggac tcgcaacaat tattccgaat
      361 ctcgcattaa cagtgagacg gtttcatgac gtcggatttt cgatgttgat tccaatttta
      421 tcgtttattg ttggtattat ttataatatc gctagtgctt tcacgcaaaa agagacgttg
      481 taccaaaaca catccacagg aactgatgtg agtattatta gtgaatttgc atttcttcca
      541 aactggattg catacacgtt gatggcgatc agtatcattt taagcttagt gacgtttatt
      601 gtttgtttat tggatagtaa agaacaagac aatcaatatg gtccttcacc gaaatatggt
      661 cgtcaatatg taggtgatga tagaaatctt ggcagcatgg cgtatcaaca aagtcatcgc
      721 aatgacacaa tgacgcgaca aggtgaaccg cgtgatattg aagaaacaga aaagaaagat
      781 gacccatatc tttattaacg aactgagtat aaagactttt gcagtgttgg tgctgtaaaa
      841 gtcttttatt atattgttaa aggtcatgat gattgaaggt atgctgataa aagaaaaaag
      901 gttgagacat cgaatttttc atgtcacatc tctattacgt catttgtcac atctctatta
      961 cgtcatttgt cacatcgata ctttgtaatt taaatgcgtc attttgacaa atatacttgt
     1021 catattgtaa agaataagtt atattcaatg taagccaagt aaagaaggag tgtgtagcaa
     1081 tgtcattgaa aatcgagcaa gtcacgaaga aatttggtca atttaccgca gtgaatcaga
     1141 tttcttttga acttgaaaaa gggaaaatgt taggatttct aggacgcaat ggggcaggta
     1201 aaacaacaac tttccgtatg attttaggat tgtctgagcc aactgaagga cgtattacat
     1261 ataacggtcg ggtgattaat cataccatgt acaatcatat cggctattta ccagaagaac
     1321 gtggcttaca tccgaaatta acagtgactg aagagttgac gtatttagcg acattaaaag
     1381 gcatggataa acccgcgatt cgtaaagcga ttgattattg gttggaacgc tttaaaatta
     1441 ctgaaaatcg tcataaaaaa attgaagcac tttcaaaagg gaatcagcaa aaagtacaat
     1501 tgttagcgag tatgttgcat gaacctgaat tgttgatttt agacgaaccc tttagtggac
     1561 tcgatccagt gaacgttgag ttgttgaagc aagcggtaaa agatttgaat gcgcaaggga
     1621 caacaatcat ttttagttca catcgtatgg agcatattga agaactgtgt gatgcgttgt
     1681 gcattttaaa acgtggtgag atggtcgttc aaggtgacat tccatctgtc aaagcaagtg
     1741 tcggctataa acgtgtcgtt gtggatgcac catatgattt atcagaagtt gcgtcattac
     1801 caggtgtatt acatcataaa gtggttaaaa ctgaaaactc cttcacggta acggatgaaa
     1861 cggtggcaga agctattttt gaagtcgtac aacaaaaagg ttacgcgaag agatttcaat
     1921 tgatggaacc gacgatgaac gaaatcttta tagagaaagt gggggattga gatgcgtaag
     1981 tttgctgcta cgtttaaatt gacgtatttt aaaaagttaa aagcaaggtc gtttattgtc
     2041 tcaactctca ttatgatgtt gatcatcaca ggtgcggcga atttcgataa aattataaag
     2101 caattcgatg gtggcagtga aaatgtcgcg attgtcacac aagacaacac attgtatcaa
     2161 caagttaaag aacaaatggc gaccattaat aaagatgtcc attatgaaaa actgtcagaa
     2221 gatgaggcta aaaagcaaat caaacaagaa aaaattgatc aagcgtatgt gattcatgaa
     2281 gataaacaac atgcattaac agggacgatt ttaagtacat cgtcaccttc tgacagtgat
     2341 aaagggacat tacaagctat attgacgcaa cttcaaacgc aaaaaatagc acaagatctc
     2401 ggtttacaag gagatgactt gcaaaggtta caaagtcaaa gtcaaatcga caatacaatc
     2461 attcaaaaag caggacaaga aaatagtagt gcgtctgagg atgaacaaga tttcgcaaaa
     2521 attattgcga tgttaggcac atttttaatg ttctttatcg tctttaacta tgcacagcaa
     2581 atcgctacag aagtggctac ggaaaaaacg tcacgtgtgt cagaaatgat tattactagt
     2641 gtgaaaccga caacacatat tatggcaaaa attgcaggcg tattagcact tgcatttaca
     2701 caaatcgtta ttttagccct aacatttgta gcaaattaca ttatttttga tttgcaatcg
     2761 atgttcggtt cagtgaattt aacgctcaca tcacacttaa caagattgat tgttttcggt
     2821 gttattttct taattttggg cattttgagt tttgttattt tagcagcgat actcggtaat
     2881 ttaactgccc gtattgaaga tttagcacaa tcgttaatgc caatgacgtt cttaatcttg
     2941 gcagcgttct atgcaggtta ttttggctca ttcaatcctg acaacgtttt tattcacatt
     3001 atgagttatg tgccattctt ttcgccattc gtgactttct caagattagc gttaacgacg
     3061 acaccaacgt ttgaagcgat tatcgcagtt attatccata ttgtacttat cggtgtatta
     3121 cttttccttg cagctaaatc atataaaaat gcagtattat cgtttgaaaa aggttggaaa
     3181 aatgtattaa agcgtgcgtt tcaacgtgaa cagtaaaatt tgaagtgatg aaggactatc
     3241 gatgcaactt gtgtcggtag tcttttttaa tggttagaaa taggggttgc gtgacacatt
     3301 aagaaataat tacccacttg ttattcggaa actgatacaa tagagtaaaa gtaatatgag
     3361 gtgaagaagt gaacttttta tattccacag caatttttat catagcgggg ttgtgtgaaa
     3421 ttggcggtgg gtatctcata tggctatggc tacgtgcgga tcgtccattt tggcttggat
     3481 gggtaggggg aatcgtattg attttatacg gtatcgttgc gactttccaa acatttccta
     3541 cttttggacg tgtgtatgca gcttatggtg gcgtttttat cgtcatgagt ctattatggg
     3601 cgtattggat tgataaagag ccaccagata aatttgatat catcggcggc gtggtttgta
     3661 tcataggggt tttaatcatg gtgttgccgg caagagggta aaccttggga gagcgtaaag
     3721 gagtaaagaa tcgcaatgaa tattaacatt gaacaacaat ctaacggaat tgaactcatt
     3781 aagattgaaa ataaggaaag taaaattgtt ttcatgaatt atggtgcgcg cattgtcagt
     3841 tggaaaattg gagataataa cattgtactg gggaatgaag tggaagcgga tgaattttat
     3901 cctcacaatc cattttattt cggtgcaacg gttggacgtt ttgggggacg tattgcgaaa
     3961 ggtcaatttg aattaaatgg acaaacatat caattagaac aaaatgatgg tgacaatcat
     4021 ttacatggcg gactacaagg attatctaac cgcttatttg attatgaaat cattgaaagc
     4081 gaaactgaag aaagcgcgca agtttatttt acgactacag tgaagcagga tgaagatcat
     4141 tacccgggaa atatagacat taaagtcgtg tttacgtatg atgcttcgaa aacgtggaca
     4201 gttgaatatt ttgcggagtc tgatgcggat acattgttca acccgatgaa ccacgtttac
     4261 tttaatttga atcgtgacaa caaagttgtg gataatcacg tcattgcaag tgaaaaacta
     4321 cagatgtttc ctttggacgc gtcgggtatg ccagtgttag agccggttga tttaacagca
     4381 ataatgggca gtcatgaaat tgaacttgcg acattattca ataccggaga tgtccatatt
     4441 caacaacaag tcacaacgcg tggtggtctc gatcatccat ttgaagtgaa ggatggcaag
     4501 atgacgattt caaaccgtga cttagtatta catgttgaga cagatgcacc acaaattgtg
     4561 atgtacacgt taaatgattc tgaagattgg aaaagccgta tgaatatttt taaaccacat
     4621 tcagggatta cgatagaaac acaaagcata ccgaacgata ttaatctttt aggtacatca
     4681 gcacattcag tgttaaaagc gcatacacct ttttactcta aaacaagtta tcatgtggaa
     4741 ttaaagccaa gaaacgcata gactttttat gaataagcat gaaaaagctg ggcaacttca
     4801 ttgtgaccca gcttttttca tacatctttc atttatttca ttgtggcttg tgcgagcatt
     4861 ttttctaata cgctttttcg tttttctgtg aggtaagggt tgttgagtgc ataagcaata
     4921 cgttctttgt tttttctatc attgtagtaa atgtcattta actcttgcac agataaacgc
     4981 gtaggttcag gtgcatgttg gactaacgat aaattactgt ttggagaaac gaagccttct
     5041 ttaatcacac ggaaataaca gccagttttt cctgattttg acatgtcttt aacgagttga
     5101 gaatagccat atttgctttg aagtttccag catggctcgc gaatttctga cacttcgata
     5161 atcgcttcac ctaaacgata ttgatcaccg aaaaagagtt ctgtttcatc aatagcgtac
     5221 acagtaatgt tctcgccaaa tagcgctgaa tcaggtaagg gttgaatcac gtcttgccac
     5281 atggcatagt tcgatttact gtataaacaa accgctttgt cgggaccgcc atgatctttg
     5341 tactcttgtt catcttctaa aaatcctgtc cgagaaagcc acattttttc ttggatgggc
     5401 tttttattca aagcactttt cataggacgt ctgtcttcgt attgcaatga ttcgattttg
     5461 ccagtcgata tcgcataaat tgcataattc attgaaatca ccctcaatcc tagtcttact
     5521 ttaattttag cctaatttgt tgcgttcgtc atggtttttc ggcgtaaatg ttgtacaata
     5581 atgttaatat aataagtcac aatgaaggag tgggctcatg agtaataagc agcttaaatt
     5641 aatgacgcta gatgaagctg ttagtcgtat tgaagacggc atgacggttg ggattggcac
     5701 aggcagtaca gtagagttac ttgtgcctaa aattgcggga ttgattcatg aaaaggggta
     5761 ccaattgatt ggcgtgtcta catcagaacg cacagaaaat caagcaaaat cattgaacat
     5821 tccaattgca catattaatg acgtacaaca tatcgatatc gcgatagacg gtgctgacga
     5881 aatcgatcca aaactgaact tgattaaagg tggcggtggt gcattgttcc gtgaaaaagt
     5941 cgtggatact ttcgctgacc gatttatcgt cattgctgac caatcgaaac tggttgatta
     6001 tttaggtcaa acttttaaat tgccagttga agtagaccgc tttaattgga aacaagtggc
     6061 acagttaatt gaaaaaaaat atgaaattga agtgacacgt cgaatgatgg aacatacacc
     6121 gtttattaca gataacggta actatatttt agattgtgct ttaaatcgag aaattgatcc
     6181 gtatcaagtg catgagtttt taatccatct cgttggtgta ttggagacag gctacttttt
     6241 agatacagta gaagaagcga ttgtgggaac ggaacaaggc gtgaaactca ttaaactgtc
     6301 agatattaaa taaaaattat aggaggaggc tgggattcag gtgaagttat cccagccttt
     6361 actatatatc atcaacgtta caaaaacaca tagtattcaa caacgatgac ttcatctttt
     6421 cattaacagt ggatgaaatg tcctaaaaag tgtgctgcca actttgctgt acgttgatcg
     6481 atatcatatt ttggattagt ttctgcaata ctgattgaag tgactttgtc agattgtaaa
     6541 atacggcgtc caagctctaa aacagtgtaa ggtgtgagtc caagaaccgc attcgcactg
     6601 acacctgggg cataagcact atcaatgaca tccatacaaa ttgtaaataa aatgacgtcg
     6661 tgttggttga tgaaatgatc gagtttatct ttgactggcg gacaaatttg acccattaat
     6721 tcttctgcaa ggacatattg cgtatttgtt ttgtcagcga aatcgaacaa ggcttgtgta
     6781 ttgcttgtac gctgaatgcc taacacgaaa tagtctaaat gctcatcttc tgttaacatt
     6841 tgatgaaaac ttgtcccaga tgtagaataa ccttcttgtc gattgtcaaa atgcgcatcg
     6901 atgttaatca caccgatcga ttgttctgga taagcttcac gaacaccaag atattgtgcg
     6961 tacgcaatat catgtccgcc tccgagtaga aatgtgcggt gatgatgacg taataattgt
     7021 gcaacataat gaccgtacgc ttgttgagag gtgattaaat cttcggccga gtgtgtccag
     7081 ttgccatatt cgattatgtt taaatctgtt gaagcgggca aacctgcaaa tgcactttta
     7141 atcgcatccg ggccttcact tgcgcccaca cgacctttat ttaagcgcac accttcatcg
     7201 attgcatatc ccaataacgc aatgtctcca tcttgaggtg cttcatgttc aaggtcgaca
     7261 aattggacag tttgaaaatg acggaatgct tggcggtcta tctcactgtc tagacgacct
     7321 gtccacaact tttgatttgg tttttgatac ataaatcgga cccctttcat attcactaac
     7381 aattagtgat aacccatgtg tcacttccat gctactattt ttaaaacata aattccaaga
     7441 aaaaagtaag cgctttaaat caaagggatg atagaaaagg gcaagttaaa caaaatacta
     7501 tatcaatagc atctaaaatt tctatgtccc attcggtcac tgttattctt gaaaactttg
     7561 aacaaa
//
LOCUS       DANHOL010000111         7558 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.112, whole genome shotgun sequence.
ACCESSION   DANHOL010000111 DANHOL010000000
VERSION     DANHOL010000111.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 7558)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7558)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7558
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.112"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(<1..146)
                     /locus_tag="PTC08_001793"
     CDS             complement(<1..146)
                     /locus_tag="PTC08_001793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LSM domain protein"
                     /protein_id="HDK5683298.1"
                     /translation="MKLWTYVGKNVRIELKNGQQFTGKADDYDDEMDNESGEDSINLY
                     DGIC"
     gene            complement(143..1495)
                     /locus_tag="PTC08_001794"
     CDS             complement(143..1495)
                     /locus_tag="PTC08_001794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="minor capsid protein"
                     /protein_id="HDK5683299.1"
                     /translation="MADSLDYWLERAQNTINSELIEDAKAAAELQRIVTLMYAEIAKE
                     LLAFYAKYATAEGLTIAEAKKIVDEFDVVAFQNKAKMLVKNKDFSKEANKQLKKYNTK
                     MYVSREKLLKQNLDLLVTEASIKVENHIEKSLVKAIDREVERQSGTLGTDINVTDKKI
                     KAVVNSNFKGVTWSERLWDDMDLVRKEVERVATNVVNRGRHPNEYVADFKKKTGATTH
                     DAKRLLVTESARVQTEAQKLSYLETLGEDGEYEFVAKRDEKTSKVCRHHDKKVYKVKD
                     MTPGVNAPPMHPHCRSTTIPRLGNWRDDFFKKRKGKYKLDEEDTKQLFAKKEMTDAID
                     SGKIKVELNVEKQNRHQLGHQLYEDYKKKNLQKGKAIPSYTLLDNSELNSLMQQKAGK
                     GYLLVDSEGKWLNKEVIDFGKTVGKAYIDGKFIATKWGKVHYSKTGTHVVPRKEEDKE
                     "
     gene            complement(1488..2933)
                     /locus_tag="PTC08_001795"
     CDS             complement(1488..2933)
                     /locus_tag="PTC08_001795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000219548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage portal protein"
                     /protein_id="HDK5683300.1"
                     /translation="MTVYTINNINTKFSPLANDDFVVSDLVELLKEENLRNFISRHQV
                     EQVPRLEMLEAYYLNRNTDILAGERRLQKYGDKADHRAVHNYAKYVSRFIVGYLTGNP
                     ITITHQDNQTNDKIIELNDLNDADEVNSDLALNLSIYGRAYEIVYRDFEDKDTFKVLD
                     PKSTFVVYDQTLDKKVVAGVRYFEKQDKDKVPVQHVEVYTTDRIYYIEIKGGTYHRVE
                     EVEHYYNDVPIIEYLNDQFKQGDFENVITLIDLYDSAQSDTANYMTDLNDAMLAIIGN
                     VDLDGEDAKAFRDANMIHLQPGTNANGSEGKVEVKYVYKQYDVAGVEAYKKRLQNDIH
                     KYTNTPDLNDEQFSGVQSGEAMKYKLFGLEQVRAIKERLFKKGLMKRYKLLLNNVNLT
                     GLKQHNYADLTITFTPNLPKSMMESINAFNALSGGVSESTRLSLLDFIDNPKEELDKM
                     HEEEAQREKQADKRGYGEAFENHANVDDSNG"
     gene            complement(2945..4219)
                     /locus_tag="PTC08_001796"
                     /pseudo
     CDS             complement(2945..4219)
                     /locus_tag="PTC08_001796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006190208.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PBSX family phage terminase large subunit"
     gene            complement(4206..4649)
                     /locus_tag="PTC08_001797"
     CDS             complement(4206..4649)
                     /locus_tag="PTC08_001797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase small subunit"
                     /protein_id="HDK5683301.1"
                     /translation="MKLSIKQQRFADEYIKSGNATQAYIKAGYSKNKANTNATKLLQN
                     TTIKQYIKERIEQAQVESLMSITEALALSASIARGEPQTAYTKRYDHLSGKVDKEVTY
                     TITPNVEERQRSIDHILKVHGAYIDKKEITQKNIEINIGDYDDES"
     gene            complement(4937..5362)
                     /locus_tag="PTC08_001798"
     CDS             complement(4937..5362)
                     /locus_tag="PTC08_001798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015978140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HDK5683302.1"
                     /translation="MIELIEMYRTNKLEIESLKLRKDICNDEIENWGAVSVNDKARLG
                     KKHDFLSRIKQTDNVVDEINVINERLQTLKTRQKKILDVIDKFEGLEHKILKLRFIEG
                     YKLADIAESLGYSEQYIKNKHSELMKRIEFKTSHKSKVL"
     gene            complement(5363..5506)
                     /locus_tag="PTC08_001799"
     CDS             complement(5363..5506)
                     /locus_tag="PTC08_001799"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683303.1"
                     /translation="MVWLVIMLIFVSLLLVGSMIENANLKGDLKAKGYEVELLRDRIK
                     ERE"
     gene            complement(5506..5673)
                     /locus_tag="PTC08_001800"
     CDS             complement(5506..5673)
                     /locus_tag="PTC08_001800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDK5683304.1"
                     /translation="MIKRTINLLITLALYELGTYLTEQAIIILTANDDVDAFNEYDHI
                     DLNDIRAEVSG"
     gene            complement(5689..5877)
                     /locus_tag="PTC08_001801"
     CDS             complement(5689..5877)
                     /locus_tag="PTC08_001801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1381 domain-containing protein"
                     /protein_id="HDK5683305.1"
                     /translation="MTQYLITTFTDSTGQTFTEATKARENQTFTVVLAESKEEAIKKY
                     ESPKVKQQVIACNMPDWA"
     gene            complement(5914..6450)
                     /locus_tag="PTC08_001802"
     CDS             complement(5914..6450)
                     /locus_tag="PTC08_001802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000185675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dUTPase"
                     /protein_id="HDK5683306.1"
                     /translation="MNDQLTVDQLQELLKIQKEFDDRIPTKNLNDTVASMIIEYVEWV
                     NTLEFFKNWKKTPGKDLDTQLDELSDFLAFNLQLALEVIDGNELNKCIDVMVNLVEEQ
                     EDLPRLHSVYFVHALHTLTGQFVNGIDSSIVQVIVMPFLYANQYYSIEQLIDAYKKKM
                     ERNHARQDGTADKDKGYV"
     gene            complement(6443..6598)
                     /locus_tag="PTC08_001803"
     CDS             complement(6443..6598)
                     /locus_tag="PTC08_001803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015978034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683307.1"
                     /translation="MEISLAETRELLTIAKRVTPVLTREEFEMVGLIYLGALERLENN
                     MEDTNNE"
     gene            complement(6600..6866)
                     /locus_tag="PTC08_001804"
     CDS             complement(6600..6866)
                     /locus_tag="PTC08_001804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015978016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683308.1"
                     /translation="MKIENIKLVVASISKDIYMAKINKDSMMDIDNRRVATEEVLRAA
                     AEWFIANRKTLCKFNGYGTLAWIPDNGHTTEEIKAHLNKLQEDE"
     gene            complement(6888..7148)
                     /locus_tag="PTC08_001805"
     CDS             complement(6888..7148)
                     /locus_tag="PTC08_001805"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683309.1"
                     /translation="MSEQTITIIKKSCDVCGYEITIDNEDDERIKKFRMPVSFTTDQT
                     EGLPCKPYISYETIDLCEECSAKAVTLLGMGAQGYNSYRFKK"
     gene            complement(7149..7406)
                     /locus_tag="PTC08_001806"
     CDS             complement(7149..7406)
                     /locus_tag="PTC08_001806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683310.1"
                     /translation="MEHDSKEYYENQSEYWFNEASKFVKQRDILIDDNAKLRKERAKL
                     QRKLDDVVSMVNAYITAERAYSGESAYNLLENELNRILEDE"
BASE COUNT         2024 a         1618 c         1090 g         2826 t
ORIGIN      
        1 aaacatatac catcatataa atttatagaa tcttctccgc tttcattatc catttcatca
       61 tcataatcat cagctttacc ggtgaattgt tgtccattct tcaattctat tcgtacgttt
      121 ttccctacat aagtccataa tttcattcct tatcttcctc ctttctaggg acgacatgag
      181 tacccgtttt tgagtagtgc actttccccc attttgttgc tataaattta ccatcaatgt
      241 atgctttacc gacagtttta ccaaaatcaa tgacttcttt atttagccat tttccttcac
      301 tatcgactag taaatacccc ttacccgctt tttgttgcat taatgaattt aattcactgt
      361 tatctaatag cgtatagcta ggtattgcct tgcctttttg taaattcttt ttcttataat
      421 cttcatacaa ttgatgacct aactgatgtc tattctgttt ttcaacgttt aattcaacct
      481 ttattttacc actatcaatg gcatccgtca tttctttttt agcaaaaagt tgtttcgtat
      541 cctcttcgtc taatttatac ttacctttac gttttttaaa gaagtcgtca cgccaattgc
      601 ctaaacgtgg tattgtcgta cttctgcaat gcggatgcat aggaggggcg ttcacacctg
      661 gtgtcatgtc cttgactttg tatactttct tatcatgatg acgacacact ttagatgtct
      721 tttcatcacg tttcgcaaca aattcatatt caccatcttc gccgagcgtt tcaaggtatg
      781 acagcttttg tgcttccgtt tgcacacgtg ctgattcagt aacaagtaaa cgtttagcat
      841 catgtgttgt agcacctgtt ttctttttga agtcagcaac gtattcgttc gggtgtcgac
      901 ctctgttaac aacatttgtt gcaactcgtt cgacttcctt gcgcactaga tccatatcgt
      961 cccacaaacg ttctgaccat gtaacacctt tgaagttact attaacaact gccttaatct
     1021 tcttgtcagt aacattgatg tcagtaccta aagtgcctga ttgtcgctct acttctctat
     1081 caatagcttt aaccaacgac ttttctatgt ggttttctac tttgatgctt gcttcggtca
     1141 ctaacaaatc aagattctgt tttaacaact tttcgcgcga tacatacatc ttagtattgt
     1201 actttttaag ttgcttattt gcttctttgc taaagtcctt gtttttaacc aacattttag
     1261 ctttgttctg aaaagcgacg acatcaaatt catcaacgat cttcttagct tcggcaatcg
     1321 taagaccttc agcggtcgcg tatttagcgt aaaatgcaag tagttccttt gcaatctcag
     1381 catacatcaa tgtgactata cgttgtaatt cagccgctgc ctttgcatct tctatcaatt
     1441 cactgtttat agtattttgc gcacgctcta accagtaatc gagtgaatca gccattagaa
     1501 tcatctacat tcgcatgatt ttcaaaagct tcaccatatc ctcgcttatc cgcttgcttc
     1561 tctcgttgcg cttcttcttc gtgcatctta tcgagttctt ctttaggatt atcgataaag
     1621 tctaacaaac tcaaacgtgt gctttcagat acaccaccac taagcgcgtt aaacgcattg
     1681 atagattcca tcatagactt tggtaagtta ggcgtaaacg taattgttag atctgcgtaa
     1741 ttatgttgct ttaatcccgt caaattaaca ttgttcaata acaacttata ccgcttcatc
     1801 aatccttttt taaacaatcg ctctttaatc gctctgactt gttcaagacc gaatagcttg
     1861 tatttcatag cttctccgga ttgaacacca ctaaactgtt cgtcattcaa atcaggcgta
     1921 tttgtatact tgtgaatgtc gttttgcaat cgcttcttat acgcttcaac gcctgcaaca
     1981 tcatactgct tataaacgta tttaacctct accttacctt ctgaaccatt cgcgtttgta
     2041 ccaggctgta aatgaatcat atttgcgtct ctgaatgctt ttgcatcctc accatctaaa
     2101 tctacatttc cgataatagc aagcatagca tcgtttaaat cagtcatgta gttagctgta
     2161 tcagactgcg cactatcgta taagtctatc aaagtaataa cattctcaaa gtcaccttgt
     2221 ttgaactggt cattgaggta ttcaatgata ggtacatcgt tgtagtagtg ttctacttct
     2281 tcgacacggt gatatgtacc acctttaatt tcaatgtagt aaattctatc agtagtatat
     2341 acttcgacat gttgaaccgg tactttgtcc ttatcttgct tttcaaagta ccttacgcct
     2401 gcaacaactt ttttatctaa cgtttggtca tatactacga aagtgctttt aggatctaac
     2461 actttgaatg tgtctttatc ttcaaaatca cgatatacaa tctcataagc acgtccatag
     2521 atagacaaat tcaatgctaa atcgctgtta acctcatcag cgtcatttaa atcgttcagc
     2581 tcaatgattt tatcgtttgt ttgattgtct tgatgtgtaa tcgtaatagg attacctgta
     2641 agataaccaa caataaaacg tgacacatac ttcgcataat tgtgtactgc tctatggtca
     2701 gccttatcac catacttttg taatcgacgt tcaccggcta agatgtcggt gtttctattt
     2761 aagtaataag cttctaacat ttctaaacgt ggtacttgtt caacttgatg tctgcttatg
     2821 aagtttctga ggttttcctc ttttaataat tctactaaat cgctgacaac aaagtcatcg
     2881 ttagcaagag gtgaaaactt tgtattaatg ttattgattg tatatacagt cattgatagc
     2941 ctccttaaaa taagctttta atcttacgta atgtattttt gtcttttttc tgatgctttt
     3001 tctgtatggt taatgcttca actgcgtatc ttaatgcatc aatgcagtga ttataagtgt
     3061 caacgggttc gttgtaatat tcatcggtat ttttgtcttt tttccaagta taattatcaa
     3121 attcctcaat cgtcttataa caacgttcat cgataacaat atcaaattga ctaataaatt
     3181 gaatgcctgc cataacgctg tctttccctt tcatggcagg cacaattcta tctataccgt
     3241 ttgctttgat ttccataatg cttttttgtt cagccgaatc agccgttatt ttttatttcg
     3301 agtaacctaa gtcattgata acttgtgcaa tctcgttatt tagcatccct tttttaacat
     3361 attccgacat gacataaagc tttttgttat cgctgtctat tttcacgtga ataaaagcgc
     3421 taggatcatt gacatatcca aagtctaaac caaaatacga aggtaaatga cctacttctt
     3481 tatcgctaat tattcgcttt tcatacttag ggaacaccaa cttatcaagt gttgcgaatt
     3541 cgcctaacgc atatattttg taatatgccg gattccgtgt tgctagcatc tctaaatttt
     3601 cacgtgtcat atcgtctaaa aacttattgt ctttgtaact cgattgtcta atcaatacgc
     3661 ctttcatcgg tttaccatgt tcaaaaaaat atttatatac ccaattcaac ttagacacag
     3721 ggttgaacat taaaaagatt tgtttcagtt tgtgtttacg ctctctcaaa cgtaaagtca
     3781 gctgtgtgta atcatttaac gtaaactcag atgcttcttc cataacgata tctgacactc
     3841 cttttatcga tttgattttt tctgggttat ctaatccctt aaacaaaaaa actgcgccat
     3901 ttggaagttc gactttgtta tctgtcttat tccataggca catgtcccag ataccataat
     3961 tgattaaaca ttctttcaca tcttcaaaca aactgtcttt gattgtcgac tgcacttttc
     4021 tcagccacaa aatacgtctt ggatattccc agtctttcaa agctttcagt acaacttttt
     4081 gaataacgcc atgtgattta ccacttgaac cgccaccata atggacttca gtaaagtaat
     4141 cgtaattgaa cagtatttcg aatatatttt tgttgaacac ttttgacggc tgcttaaagt
     4201 tcaaactaac tttcgtcatc gtaatcacca atgtttattt cgatattctt ttgtgtgatc
     4261 tcttttttat caatatacgc accatgtact tttaagatat ggtctattga ccgctgtcgc
     4321 tcttctacat taggcgtgat agtgtaagtc acttctttat ctactttacc acttagatgg
     4381 tcatatcgct tcgtataagc tgtctgtggt tctcctcgcg caatagatgc ggataatgct
     4441 agagcttccg ttatactcat taggctttct acttgagcct gctcgatacg ctctttaatg
     4501 tactgcttta ttgtagtatt ttgtagtagc ttcgttgcgt tggtatttgc tttgttttta
     4561 gaataacccg ccttaatata cgcttgcgtt gcgttaccac ttttaatgta ttcatctgca
     4621 aatctttgtt gttttatgct taacttcatc tcatatatca ccactctcgc gctaattgct
     4681 taataatatt taaaaaggca ccacacaaac gtgcagcgcc taatgatttt gttttgagta
     4741 ttttatttga gttatgcact catatcaacc acattcaatg tagctcatat cagcacacaa
     4801 aagacgcctc tcgggcgcct taacgttcaa ttaatatcaa taaaggagta tgggaatcaa
     4861 caaaaccgaa agaatcatcg tcgtacattt ctgcacacta ttaatataat gtaattcgtc
     4921 aatatcgtaa ataacgttaa agtaccttac ttttatgtga cgttttaaac tctattcttt
     4981 tcatcagctc agaatgtttg tttttaatgt actgttcaga gtatcctaga gactcagcaa
     5041 tgtctgctaa cttataccct tcaataaacc ttaatttcag tatcttgtgt tctaatccct
     5101 caaatttatc aataacatca agaatctttt tctgtcttgt ttttaaagtt tgcaacctct
     5161 cattgatcac gttgatttca tcgaccacat tatctgtttg cttgatacgt gataaaaagt
     5221 cgtgtttttt acctaatcta gccttatcgt taacgctaac cgctccccaa ttctctattt
     5281 catcgttgca aatgtctttt ctaagtttta aactttctat ttctaattta ttagttctat
     5341 acatctcaat caattcaatc atttactcac gctccttgat tctgtcacgc aacaattcaa
     5401 cctcataccc tttagctttc aaatcacctt tcaaattagc gttctcgatc atgctaccaa
     5461 cgagtaagag cgatacaaag ataagcataa taaccaacca caccattacc cactcacctc
     5521 cgcacgtata tcgtttaaat cgatatgatc atattcatta aatgcgtcta cgtcatcgtt
     5581 agctgttagt atgatgattg cttgttccgt taggtacgta cctaactcat ataacgccaa
     5641 tgtgattaat aagttgattg ttcgtttaat cattctgttt cctccttatt aagcccaatc
     5701 cggcatattg catgcaataa cttgctgttt aactttaggg ctctcatact tcttaatcgc
     5761 ttcctcttta ctttctgcta acacaacagt aaacgtttga ttctcacgcg ctttagttgc
     5821 ttctgtgaac gtttgacctg ttgaatctgt gaatgtagta attaagtatt gagtcacttc
     5881 ctcagcacct ctttcacttt agttagtatg tctttacacg tatcctttgt ctttgtctgc
     5941 tgtaccgtct tgtcttgcat gattacgctc cattttcttt ttgtatgcgt cgatgagttg
     6001 ttcgattgag taatattggt tagcgtataa aaatggcatt acaataacct gtacaatcga
     6061 actgtctatc ccattaacaa actgacctgt caaagtatgc agtgcatgta caaaatatac
     6121 tgaatgcaac ctaggtaagt cttcttgttc ttctactaaa ttaaccataa catcaataca
     6181 tttatttaat tcattgccgt caataacttc taatgctaac tgcaagttga acgctaggaa
     6241 atcagataat tcatctaatt gagtatctaa atcttttcca ggagtctttt tccaattctt
     6301 aaaaaattca agagtgttta cccactcaac atattcgatt atcatacttg ctactgtgtc
     6361 atttaaattt ttagtcggta ttctatcgtc gaattccttt tgtattttta gtaactcttg
     6421 taattgatct actgttaatt gatcattcat tgtttgtgtc ctccatatta ttttctaatc
     6481 tttcaagcgc gcctaaataa attaagccaa ccatttcaaa ctcttctcgt gttaatactg
     6541 gtgtaactct ctttgctatc gttaaaagtt ctctagtttc tgctaggctt atctccattt
     6601 cactcgtcct cctgtaattt atttaaatgc gctttaattt cctctgttgt atgtccgtta
     6661 tccggtatcc acgctaatgt tccatatccg ttaaatttac acaaggtttt tcgattcgct
     6721 ataaaccact ctgctgctgc gcgtaatact tcttcagtgg ctacacgtct gttatcaata
     6781 tccatcattg aatctttatt gatctttgcc atgtaaatgt ctttcgatat gcttgccact
     6841 accaatttta tgttttcgat tttcatcttt ttccccctct tatcgttcta ttttttaaat
     6901 ctatatgagt tgtaaccttg tgctcccata cctaaaagtg ttacagcttt tgctgagcat
     6961 tcctcacaca aatctatagt ttcgtaggaa atgtacggtt tgcacggaag cccttctgtt
     7021 tgatcagttg taaatgaaac gggcattcta aattttttaa ttctttcatc atcttcattg
     7081 tcaattgtga tttcataacc acaaacgtca catgatttct tgataatagt tattgtttgt
     7141 tctgacattt actcgtcctc caaaatcctg tttaactcgt tttctaacaa attataggca
     7201 ctctcgcccg aataagctct ttcagccgtt atataagcgt tgaccatact aactacatcg
     7261 tctaatttgc gctgtaactt agcacgctct ttacgtaact tagcgttatc atcaataagt
     7321 atgtcgcgtt gctttacaaa cttactcgct tcattgaacc agtattcact ttgattttcg
     7381 tagtattctt tcgaatcgtg ttccattact ccaccatctc cccatctttc caaaccaacg
     7441 tcatagtcat gtcgtcgttt agtatgtgga atgctctagg gtcaaacaat aaatcattaa
     7501 gagacttatc taaaagagac tcatctaaca ctgctttaat agataaattt ttattcaa
//
LOCUS       DANHOL010000112         7532 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.113, whole genome shotgun sequence.
ACCESSION   DANHOL010000112 DANHOL010000000
VERSION     DANHOL010000112.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 7532)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7532)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7532
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.113"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            185..652
                     /locus_tag="PTC08_001807"
     CDS             185..652
                     /locus_tag="PTC08_001807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1453 family protein"
                     /protein_id="HDK5683311.1"
                     /translation="MTYLVLSILIAFVMGAGVIVIRMKAQKYPVNTKKIILPPFFMAT
                     GALMYVVPYFRLTGFEIIESVVLGVVFSSVLIMTSHFEVKGSQIYLKKSKAFPFVLVT
                     LLLFRTVLKVFLGNSVDPGELAGMFFLLAFSMLVPWRLAMLYRYKKIKDQIVA"
     gene            811..1932
                     /locus_tag="PTC08_001808"
     CDS             811..1932
                     /locus_tag="PTC08_001808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016425008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exonuclease SbcCD subunit D"
                     /protein_id="HDK5683312.1"
                     /translation="MKLIHTADWHLGKVLNGHSFLEDQQYVLKQLIEVLEREQPDALI
                     IAGDIYDTAYPSKYVIQLMEETIAKINLEIQIPVVMINGNHDGKERLRYGASWFRHNQ
                     LYITTEIEQFFEPVILGNVAIYTLPFFTLSEAREYLEVSVENYEEAVKKLVDQVRPQL
                     NPAMTNILVGHFTLTGAPKSDSERDITIGTIEAVSPQFLVDFDAVMLGHIHHPFASQY
                     QNVVYSGSLLQYSFSEVQQVKGVRLFHIEADQAIRQSFIPLKPARELEVVEASFDDIM
                     NGRFKRKSDDNYFHFNVEQLTHVKDPMQKLKQIYPNTLSLTQQTQPSSYQSKVLADVK
                     KLSPLDIVGQFYSEMTTDTLSETQKSNVIQLLETMNEEE"
     gene            1935..4967
                     /locus_tag="PTC08_001809"
     CDS             1935..4967
                     /locus_tag="PTC08_001809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SMC family ATPase"
                     /protein_id="HDK5683313.1"
                     /translation="MKPLKLHLQNFGPFLDETIDFSRIQSNQLFLISGKTGSGKTMIF
                     DGIVYALYGRASTEKREVKHLRSHFAAATKPLTVTFEFEISGRLYKVVREASFLKPGN
                     KNETKPKLEVYRHKAGRFELIESTIQAGERFILELLKLKQDQFRQLFVLPQGEFKEFL
                     VSNSSDKQTILRTLFNTQLYDMLKNRLTDKTKSMKNEIDQIYTKIQSAWDELYTLDHP
                     DLVVEKGLKSEQYDLMMAALPQFETIAEQQVSKVQEEKSKVEKELKSVNEAVERQILR
                     QQLSEQQIQLKMKLEQFEVRQLHIQQLEQQLKLMNESKMALKMYQNLQELEVALKRQQ
                     NEYEQLQNENENLETEQIEQQQTLETHLLQEDEMNQKAQYLERTHHFYQECKQLKEKY
                     TRMTNIEQTIQKLMQDNEEAMQTLEAIDKDDLERQPDYEKKSQLQTEQAVLVEKVATL
                     RIAQNHATLQARQQQQLQQYTEDLKRIDGEIAQKQANIQVISENEQQLLNHEQAVMTL
                     RATLSQNDPCPVCGQTVHHVEADADIEQIKKIQQENRIIEQTLEKLKEQKIKCDANIA
                     HTKAQLAEIGEVDFNEENLKKAETEQHDIKQKLEAIDKENSRIATIQEEVGRIHQVID
                     ENQQQIQLLKNEQEYIQERMDRFVAETAYDDIETFQSAFTQLKSAVDQFYQEKATLTE
                     RRDQLTTKIKEQQYEIQLCVHQIIERSKQVQTLNADIDEALEALNIQNRETLLDILQD
                     SVYKEAYEQEVKTYHHEKQIVELKMQDVSQQLSAITVEDLDDLKVKQQQQRADFEDVQ
                     RRFNEYAFQATQNQKTAQKINDEVTYLKNTLNEQIELFQLAEILSGKNAHNLTLENYV
                     LMHYLEQILLKANQRLLSMTGQRYELVRNEKKGRGFSGLEIEVFDYYSNQARHITSLS
                     GGETFQASLALALGLSEVVQSEQGGIALDAMFIDEGFGTLDQETLETALDTLIQLQSS
                     GRLVGIISHVSELKNRIPIILEVVSKNYQSTTHLRSNE"
     gene            complement(5196..5555)
                     /gene="mscL"
                     /locus_tag="PTC08_001810"
     CDS             complement(5196..5555)
                     /gene="mscL"
                     /locus_tag="PTC08_001810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="large conductance mechanosensitive channel
                     protein MscL"
                     /protein_id="HDK5683314.1"
                     /translation="MLQEFKNFALKGNVLDLAIAVVMGAAFNKIVTSLVENIIMPLIG
                     LLFGEVDFAKNWSMYGIKYGIFIQSIIDFIIIAFALFIFVKIANTVVKPKEEEVVVEE
                     NIVLLTEIRDLLRKDSK"
     gene            5795..7429
                     /locus_tag="PTC08_001811"
     CDS             5795..7429
                     /locus_tag="PTC08_001811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BCCT family transporter"
                     /protein_id="HDK5683315.1"
                     /translation="MNSSTPEPNGKKFSPVFLVSAIIVFAIVLIGVFIPTQFGEFTNT
                     IKLWITDKLGWYYLILTTIIVFFCIFLIFSPIGKLKLGRPNDKPEFNTVSWFAMLFSA
                     GMGIGLVFYGAAEPISHFASPPNADPQSTEAFTESLRSTFFHWGFHAWAVYGVVALAL
                     AYAQFRKGEPGLLSKTLRPILGDHVDGLIGTIIDVLAVFATVIGVAVSLGMGALQISG
                     GLNYLFGLPNTIVTQSIIIVVVTILFIMSAWSGLSKGIQYLSNLNIGLGTLLLITGLI
                     VGPTVLILNMFTSSTGSLLNSFLFNSFDAAATNPQKREWMSDWTLYYWGWWLSWSPFV
                     GVFIARVSKGRSIREFISGVLLVPVIVSFIWFSVFGVLGIETAKKHKEIFDMSAETQL
                     FGVFNHIPLGIVLSIIALLLIASFFITSADSATFVLGMQTTNGSLNPSAFIKVTWGIA
                     QSLIAFVLLLSGGGDGEAGLNALQSAAIISALPFSFIVILMMISFYKDANKERKFLGL
                     TLTPNKHRLKEYVANSQQDYEDELISKRKGLREQEK"
BASE COUNT         2566 a         1219 c         1465 g         2282 t
ORIGIN      
        1 atttttttga aggcaagcga gacaacaagt ttttggtttc aacagttcaa cgatactttt
       61 taatatggaa aactattgaa tatatccatt ttccattcaa aacgacaagt atagaccatt
      121 actcatttga cttgtcatat gatatactta ttggtatctt tggatgatgt taggaggagc
      181 agcgttgaca tatttagttc tatccatact cattgcgttt gtaatgggtg caggtgtcat
      241 tgtcattaga atgaaggcgc aaaaatatcc agtaaataca aagaaaatta ttttgcctcc
      301 tttctttatg gctacgggtg cactgatgta tgtcgtccct tattttagat taactggttt
      361 tgaaatcatt gaatccgtcg tgttaggggt tgttttttca agtgtactca ttatgacctc
      421 gcattttgaa gtcaaaggta gccaaattta tttaaaaaaa tctaaagcat tcccatttgt
      481 gctggtcacg ttattactgt ttcgtacagt gctgaaagtc ttcttaggta attctgtaga
      541 ccctggggaa ttagcgggga tgttcttctt gctcgcgttt agtatgcttg taccttggcg
      601 acttgcaatg ctttatcgat ataaaaaaat caaagaccaa attgtcgcat aatgagtatg
      661 ttattgacct ttgcagtgag cgtgctgcga ggtctttttt ctatagttga aagcaagtgc
      721 aaaatgttaa taaatagcgt cggcaatcac ttgaaatgag ccatagcatg ctataaaatg
      781 aaatcgaaca tttgttctga ggtgatggaa ttgaaattaa tacatacggc cgattggcat
      841 ttaggcaaag ttttaaacgg tcattcgttt ttggaagatc agcaatacgt attaaaacaa
      901 ttgattgaag tgcttgaacg tgaacaaccg gatgcactca ttattgcagg agacatttat
      961 gatacggctt atccgagtaa atatgtgatt caactgatgg aagaaacgat tgcaaaaatc
     1021 aatttagaga tacaaatccc ggttgtgatg attaatggca atcacgatgg taaagaacgt
     1081 ttgcgctatg gtgcctcttg gtttcgacat aatcagcttt atattactac ggaaattgag
     1141 caattttttg aaccagtgat tttggggaat gtggccattt atacgctacc attttttact
     1201 ttatctgaag cacgtgagta tttagaagtg tctgtagaaa attacgaaga ggctgtgaaa
     1261 aaattagtcg atcaagtaag accacagtta aatcctgcaa tgacgaacat tttagtgggg
     1321 cattttacgc ttacaggtgc gccaaaaagt gattcggaac gtgatattac gataggtact
     1381 attgaagcag tatcgccaca atttttggta gattttgatg cggtcatgct tggacatatt
     1441 catcatcctt ttgcgagtca gtatcaaaac gttgtgtata gtggttcact gttgcaatat
     1501 tcattttccg aagtgcaaca agttaaggga gtgcgcttat ttcatattga agccgatcaa
     1561 gcgatacgcc aaagttttat cccattaaag ccagcccgtg aattagaagt tgttgaagca
     1621 agttttgatg atattatgaa tggtcgtttt aagcgtaaaa gtgatgacaa ttattttcat
     1681 tttaatgttg aacaattaac gcacgtcaaa gaccctatgc aaaagttgaa acaaatttat
     1741 ccgaatacac tgtcgttaac gcaacaaaca caaccgtcat cttatcagtc taaagtattg
     1801 gcagatgtta aaaagttatc cccattagat atcgtgggtc aattttactc tgaaatgacg
     1861 accgatacgc tttcagagac gcaaaaaagt aatgtcatcc agttgttaga aacgatgaat
     1921 gaggaggaat aatcatgaaa ccattaaagt tgcaccttca aaatttcggc ccatttttag
     1981 atgaaacgat tgatttttcc cgtattcaat ctaatcaact gtttctgatt agtggtaaga
     2041 caggttcagg taaaacgatg atttttgatg ggattgtgta tgcattgtat ggtcgtgcat
     2101 cgacagaaaa aagagaagtg aaacatttaa gaagtcattt tgcagccgct accaaacctt
     2161 taaccgtcac gtttgaattt gaaatttctg gtagattata taaagtcgtt cgtgaagcat
     2221 cgtttttaaa accaggtaat aaaaatgaaa cgaaaccgaa gcttgaagtg tatcgtcata
     2281 aggcagggcg ctttgaactt atagagagta caattcaagc aggggaacgc ttcattttag
     2341 aacttctaaa actcaaacaa gatcagttta gacagttgtt cgtattgcct caaggggagt
     2401 ttaaagagtt tttagtctca aatagttcag ataagcaaac tattttaagg acgcttttta
     2461 atacgcaatt atatgatatg ttgaaaaatc gactcactga taaaacgaaa agcatgaaaa
     2521 atgaaatcga tcaaatctat accaaaatac aaagtgcttg ggatgaattg tatacactag
     2581 accatcctga tttagtagtg gaaaaaggac tcaaaagtga acaatatgat ttgatgatgg
     2641 ctgcattacc tcaatttgaa acgattgcag aacaacaagt ttcaaaagtg caagaagaaa
     2701 aatcaaaggt tgaaaaagaa ttaaaaagtg tgaatgaagc agtagaacgt caaattttac
     2761 gccaacaatt atctgaacaa cagatacaat tgaagatgaa acttgagcaa tttgaagtac
     2821 gccaactgca cattcagcaa cttgaacagc aattaaagtt aatgaatgaa agtaaaatgg
     2881 cgctgaaaat gtatcaaaat cttcaagaat tagaagtggc attaaaacga caacaaaatg
     2941 agtatgaaca actgcagaat gaaaacgaaa atttagaaac agaacaaatt gaacagcaac
     3001 aaacgcttga aacgcattta ttacaagaag atgagatgaa ccaaaaagca cagtatcttg
     3061 agcgcacaca tcatttttat caagagtgta agcaattgaa ggaaaaatat acacgtatga
     3121 caaacattga gcaaacgata caaaagttaa tgcaggataa tgaagaagca atgcaaacac
     3181 ttgaagcgat tgacaaggac gatttagaac gccaacctga ttatgaaaaa aaatcacaat
     3241 tacaaactga acaggcagtg ttagtagaaa aagttgcgac attacgcatc gcacaaaatc
     3301 atgcaacact tcaagcgcga caacaacaac agcttcaaca atacactgag gatttaaagc
     3361 gaatcgatgg ggagattgct caaaagcagg cgaatattca agtcatctca gaaaatgaac
     3421 aacagttgtt gaaccatgaa caagctgtta tgacattgcg cgcgacatta agtcaaaatg
     3481 atccatgtcc agtatgtggt caaacggtgc atcatgttga agcggatgct gacatagaac
     3541 aaattaaaaa gattcaacaa gaaaatcgta ttattgagca aacacttgaa aagcttaaag
     3601 aacaaaagat taaatgtgat gcaaatattg cgcacaccaa agcacaactt gctgaaatcg
     3661 gtgaagttga ttttaatgaa gaaaacctca agaaggcaga aacggaacaa cacgacataa
     3721 aacaaaagct agaggccatc gataaagaaa attcacgcat tgcaaccatt caagaagaag
     3781 ttggtcgtat tcatcaagtg atagacgaaa atcaacagca aatacaattg ttaaagaacg
     3841 aacaagaata cattcaagag cgtatggaca gatttgttgc tgaaacggca tacgacgata
     3901 ttgagacatt ccaatcagcc tttacccaat tgaaatcagc tgtcgatcag ttttatcaag
     3961 aaaaagcaac attaaccgaa cgacgtgatc aacttacaac aaagataaaa gagcaacaat
     4021 atgagataca attgtgtgta catcaaatca ttgaacgttc aaaacaagtg caaactttaa
     4081 atgccgacat tgatgaagca ttggaagcat taaacattca gaatcgtgaa acattacttg
     4141 atattttaca agacagtgtt tataaagaag catatgaaca agaagtgaaa acgtatcatc
     4201 atgaaaaaca aatagtagaa cttaaaatgc aagatgtgtc tcagcaactg tccgcaatta
     4261 ccgttgaaga tttagatgat ttaaaagtaa aacaacaaca acaacgtgca gattttgaag
     4321 atgtacaaag acgttttaat gaatatgcat ttcaagcgac acaaaatcaa aaaacagcac
     4381 aaaaaattaa tgatgaagtg acttatttaa aaaatactct caacgaacaa attgaattat
     4441 ttcaacttgc tgaaattttg agtggcaaaa atgcacataa cctaacgtta gaaaattacg
     4501 ttttaatgca ttatttagaa cagattttgt tgaaagcgaa tcaacgcctc ctcagtatga
     4561 ccggacagcg ttatgaatta gtgagaaatg agaaaaaagg aagagggttt agtggtcttg
     4621 agattgaggt gtttgattac tattctaacc aagcgcgtca cattacatca ttgtccggtg
     4681 gtgaaacgtt ccaagcctca cttgcattgg cgttaggatt aagtgaagtc gttcaaagtg
     4741 aacaaggtgg cattgcgtta gatgcgatgt ttatagatga aggatttggg acacttgatc
     4801 aagaaacgtt agaaacagcc ctcgatactt taattcaatt gcaatcgagt ggtcgattag
     4861 tcggtatcat ttcgcacgtt tcagaactaa aaaatcgcat tccgattatt ttagaagttg
     4921 tatctaaaaa ctaccaaagt acaacgcatt taagaagcaa tgaataatca tgatgcatgt
     4981 ttttgagatg taaccggttt gatcctgtat cgaaatcgag aaaacggtga tgaataagct
     5041 gatgacatat attcctccgt acgcacgtga aactgccacc aatgcttttc tattcaaagg
     5101 tgttggtgac agttttcttt gataatattc gtggcatagg atatataaaa aagaagctga
     5161 gaaaattgaa tttcacagcc tcactatatt accgattatt tactgtcttt acgtaataaa
     5221 tcacgaattt cagttaataa tacaatattt tcttctacga caacttcttc ttcttttggt
     5281 tttacaaccg tatttgcgat tttaacaaaa atgaataatg caaatgcaat aataatgaag
     5341 tcgatgatag attgaatgaa aataccatat ttaataccat acattgacca gtttttcgca
     5401 aagtcaactt cgccaaataa taaaccgatt aatggcatga tgatgttttc aactaacgat
     5461 gtaacgattt tattaaaggc ggcccccatg acaacggcga ttgctaagtc aagcacgtta
     5521 ccttttaacg caaagttttt aaattcttgc agcatgtcca attcacctct aattacaaaa
     5581 tttttgaata acaaaaacga ttatacacga aagcacaatt attgcaatac aaaattttct
     5641 taaaaatcca tacatttctt agtacattga ttatatgata atgttttgtt atggtatata
     5701 tgtcgattgc acttttaatt taattattga gtttttttga ttattagtgt gtgatactta
     5761 aaatttaata tgaggaaagg gagtatgtta ttttatgaat tcttcaactc cagaaccaaa
     5821 tggtaagaag ttttctcctg tattcttagt tagtgcgatt atcgtttttg cgattgtact
     5881 gattggtgta ttcatcccaa cacaatttgg tgaatttacg aatacgatta aactttggat
     5941 tacagataaa ctgggttggt attatcttat tttaactacg attatcgtat tcttctgtat
     6001 ctttctaatt tttagcccaa tcggaaagtt aaagttggga cgtccaaacg acaagccgga
     6061 atttaataca gtttcttggt ttgcgatgtt gtttagtgca ggtatgggga ttggtttagt
     6121 cttctacggg gcagctgaac ctatttctca ctttgcgtct cctcctaatg cagatccaca
     6181 atctacggaa gcatttaccg aatcattacg atcgacattc tttcattggg gttttcatgc
     6241 atgggcagtt tatggcgtag ttgcgttagc gttagcatat gcacaattta gaaaaggaga
     6301 accgggatta ctctctaaaa cgttgcgccc aattttggga gatcatgtcg atggccttat
     6361 cggaacaatt atcgacgtgt tggcagtgtt tgcaacagtg ataggtgttg cggtttcact
     6421 tggtatgggg gcattacaaa tctcaggtgg tttaaattac ttatttggtt tacctaatac
     6481 aattgtgacg caatctatca ttattgttgt tgtaactatc ttatttatta tgagtgcatg
     6541 gtcaggatta agtaaaggga ttcaatattt aagtaattta aacattggac ttggtacatt
     6601 gttattaatt acgggactaa ttgttggacc gacagtgtta attttaaata tgtttacaag
     6661 ttcaacaggt agtctattaa attcattctt attcaacagt tttgatgcag cagctacgaa
     6721 cccacaaaag cgtgaatgga tgtctgactg gacgctttat tattggggtt ggtggttaag
     6781 ttggagccca ttcgttggtg ttttcatcgc acgtgtatca aaaggacgtt cgattcgaga
     6841 atttatttcg ggcgtattac ttgtacctgt tatcgtgagc tttatttggt ttagtgtatt
     6901 tggtgtatta ggaattgaga cggctaagaa acataaagag atttttgata tgtcagcaga
     6961 aacacaattg tttggtgtat tcaaccatat cccgctcggc attgttttat caataatcgc
     7021 attattactt attgcgtcat tctttattac atcagcagat tcggcgacat tcgtattagg
     7081 tatgcaaact acgaatggtt cgcttaatcc aagtgcattc attaaagtga cttgggggat
     7141 cgcacaatca ttaatcgcgt ttgtcttgtt actttcaggt ggcggtgacg gagaagcagg
     7201 tttaaacgcc ttgcaaagtg ctgcgattat tagtgcgtta ccgttttcct ttattgtgat
     7261 tctgatgatg attagtttct ataaagatgc caataaagag cgtaaattct taggccttac
     7321 tttaacaccg aataagcatc gtttgaaaga atacgtcgca aattcacaac aagattatga
     7381 agacgaattg atttcaaaac gtaaaggctt acgtgaacaa gaaaaataaa tatgaaattt
     7441 tacggttggt gattacatat catcagccgt tttttacgtt atcgctcata tagtgtcaat
     7501 atcttatacg gatatgtctc ccccaatcaa aa
//
LOCUS       DANHOL010000113         7431 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.114, whole genome shotgun sequence.
ACCESSION   DANHOL010000113 DANHOL010000000
VERSION     DANHOL010000113.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 7431)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7431)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7431
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.114"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            198..1151
                     /locus_tag="PTC08_001812"
     CDS             198..1151
                     /locus_tag="PTC08_001812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine cyclodeaminase family protein"
                     /protein_id="HDK5683316.1"
                     /translation="MKVFNEATVKNTYKMSDAIQDIEQLFTDMDDIHLAQRTVIPTGD
                     GAKSMLYMPCVHTGRQLGIVKITSITPENPQNGRPTTQGTIIVTDLETGEHVASLDGS
                     YLTRLRTGALSGIATKYLSRENATILGMIGTGGMAFEQLLANIEVRDIDRVILYNRTI
                     SKAENFKSRVLEAFPNLTVEVVDDVKQLVEQADIINCQTQSAEPVFDADTIQLGTHIN
                     GIGSYRPDMKEIDNRILPRADKVFFDDIEGVKEEAGEIIEANEKGIFKFEDVDGDLKA
                     LSLNGTLQRTNDESITVFKCVGAAHFDLAVALGAYERLIQQ"
     gene            complement(1201..1947)
                     /locus_tag="PTC08_001813"
     CDS             complement(1201..1947)
                     /locus_tag="PTC08_001813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphodiester phosphodiesterase"
                     /protein_id="HDK5683317.1"
                     /translation="MTKLIKPTKDFQVIAHRGLSNIYPENTRSAYQAALGKHIDMLEI
                     DLHMTKDQVLIAIHDDTIDRTSTHSGAIKDLTLDELRTYDFGSWKEGCQPEAIMTFDE
                     VLTLTKNYSKTLLIEIKKPKQYPGIEEAVIATIKQHHFPFNRVILQSFDQQSVQKLHQ
                     LAPYIRLGVLLSLRQYRFKQPPLEEIATYADFANPNFKLINKKLMNRAHQHGLKVMPY
                     TVNRVENAKRLITLGVDGLISDAPHILFKL"
     gene            2022..2480
                     /locus_tag="PTC08_001814"
     CDS             2022..2480
                     /locus_tag="PTC08_001814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SACOL1771 family peroxiredoxin"
                     /protein_id="HDK5683318.1"
                     /translation="MIEHQFPVQVTWQGGRNEVGQMQGDVIQHRVSIPASLGGIGTGT
                     NPDELLVGAAASCMTISLAATLERAHLTATKIEMNSYGEVQFDGQRFKMNRIVHEPKI
                     YVQDDTRQAQLEKRLLKLLAIADKNCMISNSIRGNVEIEAHPTVIVAAEH"
     gene            2641..3801
                     /locus_tag="PTC08_001815"
     CDS             2641..3801
                     /locus_tag="PTC08_001815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--glyoxylate aminotransferase family
                     protein"
                     /protein_id="HDK5683319.1"
                     /translation="MYTHHSLLLTPGPTPIPQRIQAAMNLPMVGHRSPDFEHIAETAF
                     RSLKPIFGSQHDVMILTSSGTSALEASMLNIVNPDDHILVIVSGAFGNRFKQIAETYY
                     EHVHVLQVEWGQALDVNEVITTIQHLDVPITAVFTQYCETSTAVLHPVAELGHALKAH
                     NEHIYFVVDGVSCIGAVDVDLERDQIDVLVSGSQKALMLPPGVAFVAYNDRALARFKS
                     VTTPRFYLDLAKHHASLEAHSTPFTPNVSTFRGVVEYGQMVEEEGFEHVIQRHYLIRD
                     AVRAALRQLELDLLVADDDASPTVTAFIPKDEAELKQIKNELKSQFNITIAGGQGKLK
                     GHILRVGHMGFISPFDLLSFISALEVILTQYRQHSYIGTATKVFLEVIHHEL"
     gene            3791..5386
                     /locus_tag="PTC08_001816"
     CDS             3791..5386
                     /locus_tag="PTC08_001816"
                     /EC_number="1.1.1.95"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate dehydrogenase"
                     /protein_id="HDK5683320.1"
                     /translation="MSYKVLVADPISVEGLKSLNDDADFEVIHQTGLSEAELIDTIQD
                     YDALIVRSQTTVTADILKAGQKLKVVARAGVGVDNIDTETATKEGIIVINAPDGNTIS
                     ATEHSVAMILSMARNIPQAHASLSHGEWDRKTFRGTELYQKTLGVIGTGRIGTGVAKR
                     LQSFGMRVLAYDPYLSEEKAKELEFTRATVDEIAQQADFVTVHTPLTEKTKGIVNANF
                     FNQAKPNLQIINVARGGIIEENALIDALDQNKIAGAALDVFENEPAIDSPVTKHPKII
                     VTPHLGASTLEAQEKVAVSVAQEIIDIIKHENVANAVNAPSGVFNEDEELKPFVDLAK
                     TTGKVGIQLLPKAPRTLKITYAGDIALDDTSLITRTLVKGVLEQDMGDHVNLINALVL
                     LNEQNVTYTIEKTKKKKGFSNYIELELINKGDVVKIGATVLNGFGPRIVRINDYPVDF
                     KPEHYQLVIHHFDRPGIVGKTGQILGEHGVNIASMHLGRSQIGGDAMMILSIDHPINE
                     TVREALLKIDGFQSVLQVTLDES"
     gene            complement(5438..6562)
                     /locus_tag="PTC08_001817"
     CDS             complement(5438..6562)
                     /locus_tag="PTC08_001817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HDK5683321.1"
                     /translation="MTKAILFDVDGVFLDESRCFDVSALTVYELLYSTDYLGLKSHID
                     LSQLTDVQITDIRATLFKNDVILNRLKSMGINSNWDMLFVVFSVHFIECLKQISHEAR
                     IDFLNSVQFDETTLRKVGQQLTNSIINYERPLQFIENGSERRSQIYQSLQSYAMTELN
                     VEEATLFDINSPLWQLAQEIYQEWYLGTALYEEVEQKVAKTDYKRGYIYHEIALAPIE
                     DIKQLLTNLKAAGYQLAIATGRPRTETLVPFETLDLLSYFDDAFIVSASEVLEVESRY
                     PELKPLGKPNPFSYIAAFNGNQKQDYYDYATNQTNRMDPEKVTIVGDSLADLFSAQTV
                     NAQFIGTLTGLKGKSAEAELRAHGAEIIVDNVLDIQKVLL"
     gene            complement(6770..7387)
                     /locus_tag="PTC08_001818"
     CDS             complement(6770..7387)
                     /locus_tag="PTC08_001818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-acyl-sn-glycerol-3-phosphate acyltransferase"
                     /protein_id="HDK5683322.1"
                     /translation="MLYHIIGKIIELIVVKVLKNLEVIGREHQPKTNRYVVTCNHESY
                     NEIILLGVSLLPNQIHYMAKQELFKNKYFGGLLTRLNAFPVNRENPGPSTLKTPVKLL
                     RDNKIVGIFPQGYRTTGETPLKRGAATIAILAKQPILPAAYVGPTKLLGLFTGKAYIK
                     FGEPIDTTDLPKDLNRQEKVDYVTQQISARTKQLQDELNVYVRNK"
BASE COUNT         2250 a         1487 c         1431 g         2263 t
ORIGIN      
        1 gttgtctcat tgacgctctt ttgtagtgcg acttgtaaat gtgagacatt aatgttcaaa
       61 cctcaaattg tttaaacaca aatatctcat atctcaaccc acaaatgata accttcaagc
      121 gaaacttgct ctttttacat catgtcgtat ttccactata ctgataatga acttaacaaa
      181 ggaggcgtgc agaactgatg aaagttttta atgaagcaac agtgaaaaat acttacaaaa
      241 tgtctgatgc gattcaagac attgaacaat tatttacaga tatggatgac attcatctcg
      301 ctcaacgaac tgtgattcca acaggtgatg gcgcaaaatc gatgctttac atgccttgtg
      361 ttcataccgg acgccaactg ggtattgtga aaatcacgtc gattacgcca gaaaacccgc
      421 aaaatggtcg accaacaaca caaggtacta tcattgtgac tgaccttgaa acgggtgaac
      481 atgtcgcaag cttggatggg agttatttaa cgcgtttacg tacaggcgcg ctcagtggta
      541 ttgcgacgaa atatttaagc cgtgaaaacg cgacaatatt aggtatgatt ggcacaggtg
      601 gtatggcatt cgagcaacta cttgcaaata ttgaagtgcg agacattgat cgcgttattc
      661 tctataaccg taccatttct aaagcagaaa attttaaatc acgagtgcta gaggcatttc
      721 caaatttaac tgttgaagtg gttgatgatg tgaagcaact tgtcgaacaa gcagacatta
      781 ttaactgcca aacccaatct gctgaacccg tttttgatgc ggatacgatt caactaggaa
      841 cgcacattaa tggcattggt tcgtatcgtc ctgatatgaa agaaattgat aatcgtatct
      901 taccgagagc agataaagtc ttttttgatg atattgaagg cgtcaaagaa gaagctggtg
      961 aaatcattga agcgaatgaa aaaggtattt ttaaatttga agatgtcgac ggtgatttaa
     1021 aagcattgtc actgaatggc acacttcaac gcacaaatga tgagagtatc acagtgttca
     1081 aatgcgtcgg tgcagcacat ttcgatcttg ctgtcgcttt aggtgcgtat gaacgtttaa
     1141 ttcaacagta atgattcaag ggccacgcat cttttaattc gatgtgtcgc ccttgttcta
     1201 ttacaactta aataatatat gcggggcatc ggaaatcagt ccatctaccc ctaatgtaat
     1261 gagtcgtttc gcgttttcca cccgattcac ggtataaggc attactttta acccatgctg
     1321 atgtgcccgg ttcatcaatt ttttattaat caatttgaag ttaggattcg caaaatcagc
     1381 atatgtcgca atctcttcta atggcggttg tttaaaacga tattgacgta aactgagtaa
     1441 cacacctaat cgaatgtaag gcgccaattg atgtaatttt tggacacttt gttggtcgaa
     1501 tgactgtaaa ataacccgat taaacggaaa gtgatgttgt ttaatcgtcg caataaccgc
     1561 ttcttcaata cctggatatt gcttgggttt tttaatttcg atgagcaatg ttttagaata
     1621 gtttttcgtt aacgtcagca cctcatcaaa tgtcataatt gcttcaggtt gacagccctc
     1681 tttccaactt ccaaagtcat acgtccgcaa ttcatccaac gttaaatctt taatcgcacc
     1741 tgaatgagta gaagtgcggt caatggtatc atcatgaatt gctatgagga cttgatcttt
     1801 ggtcatatgt aagtctattt ctaacatgtc aatatgcttc cctaacgcgg cttgataggc
     1861 tgaacgcgta ttttcaggat aaatgtttga aagaccacga tgcgcaatca cttgaaagtc
     1921 tttcgttggt ttgatcaatt tggtcataag agtcttcctt tcaattctat cttctttcta
     1981 ctacacttaa cttaacataa atgataaagg agtgaagtgt tttgattgaa catcaatttc
     2041 cagtacaagt cacatggcaa ggtggtcgca atgaagtcgg ccaaatgcaa ggtgacgtta
     2101 ttcaacatcg cgtctcaatt cccgcttcac tcggtggcat tggaacaggt acaaatcctg
     2161 acgaacttct cgtgggtgct gccgcaagtt gtatgacgat ttctttagca gctacgttag
     2221 aacgtgcaca cctcaccgct actaaaattg agatgaatag ttacggcgaa gtacaatttg
     2281 atgggcaacg ctttaaaatg aaccgtattg tgcatgaacc taaaatttat gtacaagatg
     2341 acacccgaca agcacaacta gaaaagcgtt tattgaagct gcttgcgatt gcggataaaa
     2401 attgtatgat ttccaatagc atcagaggta acgtcgaaat tgaagcgcat cctactgtca
     2461 ttgtagccgc tgaacattaa ttttaaacca tactgagtca tctttcgcaa gctcggtatg
     2521 gtctctttaa aagtattttc ttcaaatgcc atgatgattt acagaatttt cacatcttct
     2581 atctattaat atgtcagaaa atttggtaaa atgtaaaaat attactggag gaggttttct
     2641 atgtatactc atcattcatt acttttaaca cctggtccta cccctatccc ccaacgtatc
     2701 caagccgcaa tgaatttacc catggtgggg catcgttcac ctgactttga acacattgct
     2761 gagactgcat ttcgttcatt aaaaccgatt ttcggcagtc aacatgatgt catgatctta
     2821 acgtcgagtg gtacgagtgc attagaagca agtatgttga atatcgtcaa tcctgatgat
     2881 cacattctcg tcattgtgtc aggcgcattc ggtaatcgtt tcaaacaaat tgcagaaacg
     2941 tattacgaac acgtccacgt ccttcaagtt gaatggggtc aagcgctcga tgtcaacgaa
     3001 gtgatcacaa cgattcaaca tcttgatgtc cccattactg cagtattcac tcagtattgt
     3061 gaaacgtcga cagctgtcct tcaccctgta gctgaactcg gacatgcatt gaaagctcac
     3121 aatgagcaca tttatttcgt cgtggatggt gtgagttgta tcggtgcagt agatgttgac
     3181 cttgaacgtg atcaaatcga tgtgctcgtt tctggcagtc aaaaggcgtt aatgttgcct
     3241 cccggtgtcg cttttgtagc atataatgat cgcgcattgg cacgtttcaa atcagtaacg
     3301 accccacgtt tttatttaga cttagcgaaa catcacgctt cattagaggc gcattcgaca
     3361 ccatttaccc ctaacgtgtc gacttttaga ggggtcgttg aatatggaca gatggttgaa
     3421 gaagaaggat ttgaacacgt gattcaacgc cactatttga ttagagatgc tgtgcgcgcg
     3481 gcattgcgac aattggaatt ggatttactt gttgctgatg atgacgcatc ccctactgtc
     3541 acagccttta taccgaaaga tgaagcagaa ttaaaacaga ttaaaaatga attaaagtca
     3601 caattcaaca ttacgattgc agggggacaa ggtaaattaa aaggccacat tttacgtgtc
     3661 ggtcatatgg gctttatttc gccatttgat ttattatctt ttatctcagc actcgaagtt
     3721 attttaactc agtatcgcca gcattcgtat attggtactg caacaaaagt atttttggag
     3781 gttattcatc atgagttata aagttttagt cgcggaccct atttcagtag aagggttaaa
     3841 aagtttaaat gacgatgccg attttgaagt catccaccaa acaggtttat ctgaagcaga
     3901 attaatcgat actattcaag actatgatgc tctaattgtt cgaagccaaa cgacagtgac
     3961 tgcggacatt ttgaaagcag gccaaaaatt aaaagttgtt gctcgcgcgg gtgtcggtgt
     4021 cgacaatatc gatacggaaa ctgcgacaaa agaaggtatt atcgtcatta atgcacctga
     4081 tggcaatacg atttctgcta cagaacattc tgtcgctatg attttaagta tggcacggaa
     4141 tattccacaa gcccacgctt cacttagtca tggtgaatgg gatcgtaaaa catttcgtgg
     4201 gactgaattg tatcaaaaaa cgctcggtgt cattggtacc ggtcgtatcg gtacaggtgt
     4261 cgcaaaacgt ttacaaagct ttgggatgcg cgttctagcc tatgatcctt atttaagtga
     4321 ggaaaaagcg aaagagttag aatttacgag agcaacagta gatgaaatcg cacaacaagc
     4381 agactttgtg accgtgcata caccgcttac agaaaaaaca aaagggatcg ttaatgctaa
     4441 ctttttcaat caagccaagc cgaacttgca gattattaac gtagcacgtg gcggtatcat
     4501 tgaagaaaat gcattaattg atgcgttaga tcaaaacaaa attgccggtg ctgcattgga
     4561 tgtctttgaa aacgaacctg caattgattc accggtaacg aaacacccaa aaatcattgt
     4621 cacacctcat ttaggcgcgt ctacacttga ggcacaagaa aaagtagcgg tgtctgttgc
     4681 acaggaaatt atcgacatta ttaaacatga aaatgtcgcc aacgcagtca atgcgccaag
     4741 tggtgtattc aatgaagatg aagagcttaa accttttgtc gatttggcta aaacgacagg
     4801 taaagtcggc attcaactcc ttccaaaagc ccctcgtacg cttaagatta catatgcggg
     4861 cgacatcgcg ttagatgata caagtctcat cacgcggaca ctcgttaaag gtgtactcga
     4921 acaagatatg ggcgatcacg tgaacttaat taatgcgctc gtgttattaa atgaacaaaa
     4981 tgtgacgtat acgattgaaa aaacgaaaaa gaaaaaagga ttcagtaatt atatcgagct
     5041 agaactcatc aataaaggag atgtggtgaa gattggtgca acggtattaa atggttttgg
     5101 tcctcgcata gtacggatta atgactatcc tgttgacttt aaaccggaac attatcagct
     5161 cgttatccat cattttgacc gccctggcat tgtcggtaaa acaggacaaa ttttaggtga
     5221 gcacggtgtc aacattgctt ctatgcattt aggtcgttct caaattggtg gcgatgcgat
     5281 gatgatctta tctatcgacc atccgattaa cgaaactgtt cgtgaagcat tattaaaaat
     5341 cgacggcttc caaagcgttt tacaagtcac attagatgaa tcataaattt catgagtaga
     5401 ggctgggaaa attgtgttcc cagcctcttc gttatcatta taataagact ttttgaatgt
     5461 ctaacacatt atcgacgatg atttccgctc cgtgtgccct taattctgct tcagcggact
     5521 tccctttcaa gcccgtcaat gtcccgataa attgtgcatt aactgtttgc gcactgaaca
     5581 aatccgcaag tgaatcgccg acaatcgtga ctttctcagg atccattcga ttcgtttggt
     5641 tcgtagcata atcgtaatag tcttgttttt gattaccatt gaatgctgca atataactaa
     5701 atgggttcgg ctttccgagt ggttttaact ccggatatcg tgattccacc tctaacactt
     5761 cactcgctga aacaataaac gcgtcatcaa aataggacaa taaatccaat gtttcaaaag
     5821 gcacaagcgt ttctgttcgt ggtcgccctg tcgcgatagc caattggtaa cctgccgctt
     5881 ttaaatttgt taacaactgt ttgatatcct ctatcggtgc caatgcgatt tcatgataaa
     5941 tgtatccgcg cttataatcg gttttcgcta ctttttgttc aacttcttca taaagtgctg
     6001 tccctagata ccactcttga taaatttctt gtgctaactg ccataacgga ctattaatat
     6061 caaaaagtgt tgcttcctca acattaagtt ctgtcatcgc gtaactttgt agtgattgat
     6121 aaatttgtga acgtctttct gaaccatttt caataaattg aagcggtcgt tcataattga
     6181 taatgctatt tgtaagttgt tgaccaactt tccgcaaagt cgtctcatcg aattgtacag
     6241 aatttaaaaa atctatgcgt gcctcatgtg atatctgttt taaacattca ataaaatgca
     6301 ccgaaaacac tacaaataac atatcccagt tcgaatttat ccccatagat tttaaccggt
     6361 ttaaaatcac atcgttttta aataatgttg cacgaatgtc agtgatttgt acgtccgtca
     6421 actgtgacaa atctatatgt gactttaatc ccaaataatc cgtactatat aacaattcgt
     6481 acaccgttaa agctgaaacg tcaaaacaac gtgattcatc taaaaacacg ccatccacgt
     6541 caaaaagtat cgctttcgtc atacttagac cctccattgc agaaaattca gataaaaaca
     6601 ttataacatg aatgactcaa gatgcgtaaa catgatttta cacaccaaga atttccatct
     6661 tgttatggta caatcattca tgagaaacac ccacactatc caatttgata tgacattgaa
     6721 aaataaaaat agcgatacaa gtcatcataa ctcatatcgc tttatcatct tatttatttc
     6781 ttacataaac atttaattcg tcttgcaact gtttcgtacg cgcactgatt tgctgcgtca
     6841 cataatccac tttctcttgg cggttcaaat cttttggaag atctgtcgta tcaatcggtt
     6901 cgccaaactt aatgtaagct ttaccagtaa ataaaccgag caatttcgtt ggaccaacat
     6961 aggcagctgg taaaatcggt tgtttcgcta aaatcgcaat cgtcgcagca ccacgtttta
     7021 aaggtgtttc tcctgtcgta cgataccctt gtggaaaaat acctacaatt ttattgtctc
     7081 ttaataattt taccggtgtt ttcaaagtac ttggcccagg attttcacga tttactggaa
     7141 aggcatttaa tcgtgttaat aatccgccaa aatatttgtt tttaaataac tcttgctttg
     7201 ccatgtagtg aatttgattt ggcaataatg atacacctaa caatatgatt tcgttataac
     7261 tttcatgatt acacgtcacg acataacgat tcgtcttagg ttgatgttct cgccctatca
     7321 cttctaaatt tttcaaaact ttcactacga taagctcaat gatcttgccg ataatatgat
     7381 ataacatgtt cacacctgct tttactttag attaatcctt taaattctat c
//
LOCUS       DANHOL010000114         7414 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.115, whole genome shotgun sequence.
ACCESSION   DANHOL010000114 DANHOL010000000
VERSION     DANHOL010000114.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 7414)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7414)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7414
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.115"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            19..849
                     /locus_tag="PTC08_001819"
     CDS             19..849
                     /locus_tag="PTC08_001819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HDK5683323.1"
                     /translation="MNITGHHHISMYTKDLDQNKAFYTETLGLHLTKETVNQDDHGMV
                     HIFYGDQQNSPGTLLTFFEIPNAGAMRKGTNMIARIGLLVPNEEALDFFEARLQEKAT
                     NISRGTYMEQPALYFDDPDTLSYVMMVNGDAVIPNGWQNPVDNDIPAEYQILGLGPIE
                     IHVADAQKTLDYLRDTLDFKDKAQFGEQSVVAIDDQGYYSDLVIIEKDGPNVRPGRGY
                     VHHHALATENDDTLNQLVSLHDHLAGKHSGVIDRIWFKSLYYRQNKIMYEFATLAPGF
                     "
     gene            895..1539
                     /locus_tag="PTC08_001820"
     CDS             895..1539
                     /locus_tag="PTC08_001820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HDK5683324.1"
                     /translation="MYRAVIFDFDGTIIDTEQHLYETVNRYLNEAGHANMSADFYRSN
                     IGGRALGIHQHLLTHLGEMLTDQVYQEHYETAGQLPLRPGVLELMQQLHQRHIPMGIA
                     SSSTRHHIESLVQKLGIEKYISVIKGREDVETVKPAPDLYLAAVQALNYSPTHCLAIE
                     DSVNGATGAICAGLDVIVNSNQFTAQSDFSELDLLAKDVDLSQVVAQYFDGVQR"
     gene            1536..1727
                     /locus_tag="PTC08_001821"
     CDS             1536..1727
                     /locus_tag="PTC08_001821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683325.1"
                     /translation="MSLEMILFFIVAPLIILVGNLVLAPRFQKHIPMRVHLLSAATGL
                     IVYAVLASIIYYFFLQGKI"
     gene            complement(1942..2124)
                     /locus_tag="PTC08_001822"
     CDS             complement(1942..2124)
                     /locus_tag="PTC08_001822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683326.1"
                     /translation="MSTQTIGIIVIVILLISFLPNAYMLYKTSKEGTENTRYKLMVGV
                     DAMLLVLIIAAILLLT"
     gene            complement(2131..2466)
                     /locus_tag="PTC08_001823"
     CDS             complement(2131..2466)
                     /locus_tag="PTC08_001823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683327.1"
                     /translation="MDRTRIIRGVLISIILGLLFFFLNQTQSTYTTTELLLRSVLVAI
                     VFAVLYFVVFTILSHDTRRRIYGPPLLIGIILGILVGQWLEHAIVGLALGVAVGLIVG
                     AIRQRFFKE"
     gene            complement(2554..3396)
                     /locus_tag="PTC08_001824"
     CDS             complement(2554..3396)
                     /locus_tag="PTC08_001824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate/nitrite transporter family protein"
                     /protein_id="HDK5683328.1"
                     /translation="MKDTNIKWDTIFYGRQWVSNIIETIQKKDVLQSFYLRRYLLRAM
                     MAGFIISIITVFVLTVKTTFAPDVAPGLVNMAGAFTFSFALVLILFTNSELLTSNFMY
                     FTVGLYYHLIRPTRVIKIFTLCFVGNMIGAVILFSLLRFSNVMTPDMLQMLDHTVQVK
                     IHDYSFQNILVRAIFANFFINIALVIAMQIDDVLAKMFVMMFGVTIFAFMGYEHVVYN
                     ACLFIASAIYQTDAFNMLHMAKNIIGALLGNYIGGGLIIGLFYAYLNDHGQFKAIKKE
                     NKKN"
     gene            3763..5151
                     /locus_tag="PTC08_001825"
     CDS             3763..5151
                     /locus_tag="PTC08_001825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HDK5683329.1"
                     /translation="MEDNQLHRGLSSRQIQMIALGGTIGVGLFMGASSTIAWTGPSVI
                     FAYLVAGLFLFLIMRAMGEMVYLDPSTGSFANFATDYIHPVAGYVTAWANIFQWIVVG
                     MSEVIAVGAYMKFWFPELPTWIPGLIVIVLLTAANAVSVKAFGEFEFWFAMIKIVTII
                     LMIIAGFGLIFFGIGNGGNPIGLSNLTAHGGFMPNGWLGFFFALSIVIGSYQGVELIG
                     ITAGETKDPQKNIKKAVNGVIWRILIFYIGAIFVIVTIYPWNELHDIGSPFVATFAKI
                     GITIAAGLINFVVITAAMSGCNSGIFSSSRMIFTLAQHRQLPAIFTKVMRNGVPFYTV
                     LAVSIGILIGVILNVVLPQFIDGSENIFVYVYSASILPGMIPWFMILFSHIQFRKKFP
                     EKLENHPFKMPLAPVTNYLSIAFLLMVLVAMLINNETRVSVIIGFLFLGFMAVFFFLR
                     GYHKRDKEDFKL"
     gene            complement(5347..5700)
                     /locus_tag="PTC08_001826"
     CDS             complement(5347..5700)
                     /locus_tag="PTC08_001826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683330.1"
                     /translation="MNGYEMPNLIQALEVLNELLDLTTTYDLTYARDPEYAQDILTNL
                     KAKVQSHYLQSPQPVHTHAYSPYPYDLYYCCLYNLYHNPLVSINFGSQRKLNQSYIQQ
                     ITRTRAYFQMCTGTF"
     gene            5844..6575
                     /locus_tag="PTC08_001827"
     CDS             5844..6575
                     /locus_tag="PTC08_001827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease"
                     /protein_id="HDK5683331.1"
                     /translation="MSKYKWKDIAWRDLLLVPIVIVATFVFGILAAIISFVFFNVSEA
                     ALLSDSNALVAQVIATVVAYLIVILSFYLLHYKTMGQRFMKGLQGIRQYIFWIVGAYL
                     VAQAASTLYGYLQQFLPERFQYDTTQNEMLIDQLFAIPWFTPINFMMIVILAPVVEEI
                     FFRHILIGELGKKLNFKVMAVISALLFAGVHVLQATSPFEMIDYLILAVPLVFLYIKS
                     GRNLGVSIAFHMLNNFISFVVTIIQ"
     gene            complement(6629..7330)
                     /locus_tag="PTC08_001828"
     CDS             complement(6629..7330)
                     /locus_tag="PTC08_001828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH domain-containing protein"
                     /protein_id="HDK5683332.1"
                     /translation="MNKETRQKKLLALIQQDKPMTALELAQALNVSKRTILRDMQELE
                     GKGVQIVAHAGMYGGYQLQANQHYYQLNLTQTELQALYLILKESQAQSTLPYEAATNH
                     LIQKILKQPYTHIRRTLRQLDQYVLYETRQQPRLPVQFSDILIYCQERKVMGIDYKSD
                     ANGEQRFENVIFIGLIARHDGWQAIVYHIGGDYTQYVDISTIEDISYSFQKSIQTNDI
                     TLENYETYLKDSKHQ"
BASE COUNT         2251 a         1267 c         1508 g         2388 t
ORIGIN      
        1 cacttggagg ggtgtatcgt gaacattact ggacatcatc atatctcaat gtacactaaa
       61 gatttggatc aaaacaaagc attttatacg gaaacattag gcttacactt aacgaaagaa
      121 acggtcaacc aagatgatca tggcatggta cacatttttt acggtgacca acaaaattca
      181 ccaggcacat tactgacatt ttttgaaatt ccaaatgcgg gtgcaatgcg taaaggaaca
      241 aacatgattg cgagaattgg gctactcgta ccaaatgaag aagcactcga tttctttgaa
      301 gcacgattac aagaaaaagc gacgaacatt tcaagaggca cttacatgga acaaccggca
      361 ctgtattttg acgatccaga tacattgtca tatgtcatga tggtgaatgg cgatgcagta
      421 attccaaatg gatggcaaaa tccagtcgat aatgacattc ctgcagagta tcaaatttta
      481 ggactaggac cgattgaaat ccacgttgca gatgcacaga aaacgttaga ctatttacgc
      541 gacacactag attttaaaga taaagcgcaa tttggtgagc agtcagtcgt tgcgattgat
      601 gatcaagggt attattcaga cctcgtaatc atcgaaaaag acggtcctaa tgttcgacca
      661 gggcgcggtt atgttcacca tcacgcactt gcaacagaaa atgatgacac attaaatcaa
      721 ctcgtttcac tacatgatca tttagcgggc aaacattcag gtgttattga tcgtatttgg
      781 tttaaatcac tgtactatcg tcaaaataaa attatgtatg aatttgcaac gttagcacct
      841 ggattttaac aatgaatgaa gaaaccggaa ccaagaattt aggaggaagc aagcatgtat
      901 cgcgcagtca tttttgattt tgatggtacg attatcgata ccgaacaaca tttatatgaa
      961 acagtgaatc gttatttgaa tgaggcaggt catgccaata tgagcgcaga cttttatcgt
     1021 tcgaatattg gcggacgagc gctagggatt caccaacatt tacttactca tttaggagaa
     1081 atgttaacag atcaagtcta tcaagaacat tatgagacag ctggacaact gcctttaaga
     1141 cctggtgtgt tagaactgat gcaacaactg catcaacgtc acattccgat ggggattgct
     1201 tcaagtagta caagacatca cattgagtca ttagttcaga agttaggtat cgaaaagtat
     1261 atttcagtga ttaaaggtcg agaagatgtt gaaacagtaa aacctgcccc tgatttatat
     1321 ttagctgcgg tacaagcact gaattatagt ccgacgcatt gtttagcaat tgaggattca
     1381 gtgaatggtg cgacaggtgc gatttgtgca ggacttgatg ttatcgtgaa ctcaaatcaa
     1441 ttcacggctc agagcgattt ttcagaattg gacttgcttg ctaaagatgt cgatttgagc
     1501 caagtcgtcg cacaatattt tgatggagta caacgatgag tttagaaatg attttatttt
     1561 tcattgtggc acctttgatt attttagtcg gcaatttagt attagcgcca cgttttcaaa
     1621 agcatattcc gatgcgcgtt catctgttat ccgctgcaac aggactcatc gtatacgcag
     1681 tgcttgcttc aatcatttat tattttttct tacaaggtaa aatttaacgt taaacgtagg
     1741 tgtcatactc atttgagtgg gtggtatctg cgtttttctt ttggactatg gcatgtggca
     1801 tttgttgcaa aagagatggt gataatgtgg agcagcgtag taactaggga tgtttttatc
     1861 tctctggagt aacaaagaga aagttcatga caccacaagt taagttcaac aatgattctg
     1921 ttgtgatgtc atgagggtgg tttaggttaa tagtaagatg gcagcaataa ttaacactaa
     1981 tagcatggcg tctacaccga ccattaattt ataacgtgtg ttttcagtgc cttcttttga
     2041 agttttatat aacatatagg cgttaggaag aaaactaatt aaaagaatta cgatgacaat
     2101 gataccaatc gtttgtgttg acatatttca tcactccttg aaaaaacgtt gtcgtattgc
     2161 accgacgatt aagccaactg caaccccgag tgcaaggcct actatagcat gctctaacca
     2221 ttgccccact agtataccta agatgatgcc aataagtagg ggaggtccat aaatgcgtct
     2281 tcgtgtgtcg tggcttaaaa tcgtgaagac aacgaagtat aataccgcaa agacaatggc
     2341 aacgagtact gaacgtaaca ataactcggt tgtcgtatat gtggattgtg tttgatttag
     2401 gaagaaaaag agtagaccta aaataattga gatgaggaca cctctaatga tacgtgtgcg
     2461 atccataata tgctccttag tctttgaatt gtccttatta taacatagac cgcaatcaat
     2521 gatgacgtgt acttatctat cacaaacgat gcattagttc tttttgtttt cctttttgat
     2581 cgctttgaat tgaccgtgat cattcagata agcataaaat agcccgatga ttagtccacc
     2641 gccgatatag tttccaagca aagccccgat aatgttttta gccatatgca gcatattgaa
     2701 agcgtctgtt tgataaatgg cactggcaat aaacaaacaa gcattataaa caacgtgttc
     2761 atagcccata aacgcgaaaa tcgttacacc gaacatcatg acaaacattt tggccaacac
     2821 atcatcaatt tgcatggcaa tgactaatgc aatgttaata aagaagttcg cgaaaatagc
     2881 acggactaaa atgttttgaa aactataatc atgaattttg acttgtacgg tatggtcaag
     2941 catttgtagc atatccggtg tcatgacatt ggaaaaccgg agtaaactaa acaaaatgac
     3001 agcaccaatc atattcccaa caaaacatag tgtgaatatt ttaattacac gtgttggacg
     3061 aatcaaatga taatacaaac ccaccgtaaa atacatgaaa ttactcgtta gaagttcaga
     3121 gtttgtgaac agaattaaca cgagggcaaa actaaaagta aatgcacccg ccatattcac
     3181 gagaccgggc gctacgtcag gcgcaaatgt tgttttaact gttaatacaa aaacggttat
     3241 gatgctaata ataaatcctg ccatcattgc tcttaataaa taacgcctta gataaaagct
     3301 ctgaagtaca tctttctttt gaatcgtctc aataatattt gaaacccact ggcgaccata
     3361 aaaaattgta tcccatttga tattagtatc tttcataaat tagattcctt tcttaaataa
     3421 taaacctagt ataagcaatt cgtaagccaa tgtgaatata ttcacaatag tttaatgtga
     3481 caatatttcg acggtcgatg gtgtaaacgt caacatatct aaatgcgatt tttagtagga
     3541 taagattact gtgtatagga tggtcgatat atcaatggtt aaaggtgtaa cggatataca
     3601 ggtagcaggg ctgtttggag atgaaaatag gaatgtaaat gaatgggtta acatttttaa
     3661 ttttttcttc aaattctgat agtttatagt ataatagcga catgcacggt tcaacatcaa
     3721 ttttatatga gtaggggtta caaaaggaga tggaacgttg tcatggaaga taatcaatta
     3781 cacagaggat taagttctcg acagattcaa atgatcgcac tcggtggtac tatcggtgtc
     3841 ggattattca tgggggcatc aagtacaatt gcgtggacag gtccctctgt tatttttgca
     3901 tatttagttg cgggtttatt tttattttta atcatgcgtg caatgggaga gatggtctat
     3961 cttgatccat caactggttc gtttgcaaac tttgctacag attatatcca ccctgttgca
     4021 ggttacgtga ctgcatgggc caacatcttt caatggattg ttgtagggat gtcggaagtc
     4081 attgcagtcg gcgcatatat gaagttttgg tttccagaat taccaacatg gattccagga
     4141 ctgattgtca ttgttctgtt aacagctgcc aatgcggtgt ctgtaaaagc gtttggtgaa
     4201 tttgaatttt ggtttgcgat gattaaaatc gtgacaatta ttttgatgat tattgctggt
     4261 ttcggtttga tcttcttcgg tatagggaac ggaggcaatc caatcggtct tagcaatctt
     4321 acagcacatg gcggttttat gccgaatggt tggctaggat ttttctttgc tttatctatt
     4381 gttatcggtt catatcaagg ggttgagttg atcggtatta cagcaggtga aacaaaggat
     4441 cctcaaaaaa atattaaaaa agcagtcaac ggcgtcattt ggcgtatttt aatcttttat
     4501 atcggtgcca tctttgttat tgtaacgatt tatccttgga atgaattgca tgacattggt
     4561 agcccatttg ttgcaacatt cgcaaaaatc ggaattacga tagcggcagg tttaattaac
     4621 ttcgttgtga ttacggcagc gatgtcaggc tgtaactcgg gtattttcag ctcaagtcgt
     4681 atgattttta ctttagcaca acatcgtcaa ttaccagcga tatttacaaa agtcatgaga
     4741 aacggtgtac cattttatac agttttagct gtatctattg gtattttaat cggtgtcatt
     4801 ttaaatgttg tattaccaca gtttatcgat ggttctgaaa atattttcgt ttatgtttat
     4861 agtgcatcta ttttacctgg aatgattcca tggtttatga ttttatttag ccatattcaa
     4921 tttagaaaga aatttccaga aaaattagaa aaccatcctt tcaaaatgcc acttgcacca
     4981 gtgacaaatt atctgtcaat cgcattttta ttaatggtgt tagttgcaat gttaattaat
     5041 aacgaaacac gtgtatctgt gattatcggt ttcttattct taggttttat ggccgtattt
     5101 ttcttcttac gcggttatca taaacgcgat aaagaagact ttaaattata aaagtaacaa
     5161 gcatcgtatt gtattttggg aaagagatac atagcgatat tataatgatc gagcttatat
     5221 tcgcatagtt gagatgaatc cgtgcttcaa tatgcgtgtc gatttttaat tgtaaagcgt
     5281 gtttaaagtg ggatggcaca tgtcattccg ctttttaaat ttgctgaaaa tcgcacaaac
     5341 tgtgttttaa aatgtgcccg tacacatttg aaaataagcg cgtgttcgtg taatttgttg
     5401 gatataactt tgattcaatt tacgttgact gccaaaattg atagagacta atggattgtg
     5461 atacaagttg taaagacaac aatagtaaag gtcgtaggga tagggactgt atgcatgtgt
     5521 atgaacgggt tgaggtgact gtagataatg cgattggact ttcgctttca aattcgtcaa
     5581 tatgtcttgt gcgtattcgg gatctcgtgc gtaggttaaa tcgtaagttg tggttaagtc
     5641 taacagttca ttcaaaacct cgagtgcttg tatcaaattg ggcatttcat aaccgttcat
     5701 cagtagcgtc ctttcatgaa ataatatata gtataacaag aatcattcac gtgcgtaagt
     5761 gttgtatgaa actgtaaaaa agtcacaggt ctgtgatatg tatacaaccg ttcgtgcatt
     5821 tttaaaggaa agagagtatt gaaatgtcaa aatataaatg gaaagatatt gcttggcggg
     5881 acttattatt agttcctatt gttatcgttg caacgttcgt tttcggaata cttgccgcta
     5941 tcattagctt tgtgtttttc aatgtgagtg aagcggcgtt attgtctgac tcaaatgcac
     6001 tcgtcgcaca agtcattgct acagtcgttg cttacttgat tgtcatcctt agtttttact
     6061 tgttacatta taaaacgatg gggcaacgct ttatgaaggg gcttcaaggg atacgccaat
     6121 acatattttg gattgtaggg gcatacctcg ttgcacaagc cgcttcaacc ctctatggtt
     6181 atctacaaca gtttttgccc gaacgatttc aatatgatac gacgcaaaac gagatgctga
     6241 ttgaccaact tttcgctatt ccgtggttta cgccaatcaa tttcatgatg attgtgatat
     6301 tagcaccagt cgttgaagaa attttcttcc gtcatatttt aattggggaa ttaggtaaga
     6361 aattgaactt taaagtcatg gccgttattt cagccttgtt gtttgcgggg gtacacgtgc
     6421 ttcaagcgac ctccccattt gaaatgatcg attacttaat tttagccgta ccacttgtgt
     6481 tcttatatat caaaagtggc cgtaatttag gtgtgtcgat cgcttttcat atgttaaata
     6541 attttatttc gttcgtggtc acaatcatac aatagtgaca tcccacatag aaagaaccaa
     6601 tgttacgctt ttaggcatga cattggtttt attgatgttt tgaatctttt aaataggttt
     6661 cgtagttttc aagtgtaata tcgttcgttt gtattgattt ttggaaagaa tacgaaatgt
     6721 cttcaatcgt agagatatca acatattgtg tataatcgcc gccaatatga taaacaatcg
     6781 cttgccaacc gtcgtgacgt gcaatcaagc caataaaaat gacattttca aagcgttgtt
     6841 caccatttgc atcgctttta tagtcaatgc ccatcacttt gcgctcttgg caatatatta
     6901 aaatgtcact gaattgaacg ggcaagcgtg gttgctgacg tgtttcgtat aaaacgtatt
     6961 gatccagttg acgtaatgta cgtcgaatat gtgtgtaagg ttgttttaat attttttgaa
     7021 tgagatgatt cgttgctgct tcataaggta atgtcgactg tgcttggctt tcttttaata
     7081 ttaaatagag cgcttgtaat tctgtttgcg tcaagttcaa ttgatagtaa tgttgattcg
     7141 cttgaagttg gtagccacca tacatccccg catgtgcgac tatttgaacg cctttacctt
     7201 ctaattcttg catgtcacgt aaaatagtcc gtttagaaac gttgagagct tgcgctaatt
     7261 caagggcagt catcggtttg tcttgttgaa tcaaggccaa cagcttcttt tgccgtgttt
     7321 ctttattcat acgaacccct cccaaacatg tttaacaata ttatagcata tcgattaaat
     7381 aattatagtg aaagactttt tccatctcaa ttgc
//
LOCUS       DANHOL010000115         7410 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.116, whole genome shotgun sequence.
ACCESSION   DANHOL010000115 DANHOL010000000
VERSION     DANHOL010000115.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 7410)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7410)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7410
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.116"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            303..851
                     /locus_tag="PTC08_001829"
     CDS             303..851
                     /locus_tag="PTC08_001829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HDK5683333.1"
                     /translation="MVKTIYFVRHATREHTVKSDTAPLSEKGRREAENLVKWFEGKHV
                     DAIYASPYARTLETVVPLARVNNINIQVEDGLRERVIGEWVDDFDTYAAEQWMNFDYR
                     LLGGESLKQVQKRIVSSFQDILSQEKGETIVISGHGTSLAVLFHTLTDGTFAYEKFKQ
                     MSMPDVYTYDVDTKVLKRAYLN"
     gene            993..2063
                     /gene="ulaG"
                     /locus_tag="PTC08_001830"
     CDS             993..2063
                     /gene="ulaG"
                     /locus_tag="PTC08_001830"
                     /EC_number="3.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ascorbate 6-phosphate lactonase"
                     /protein_id="HDK5683334.1"
                     /translation="MTLNHINEVTKEKWILNTFPEWGTWLNEEIENEVVEENTFAMWW
                     LGCTGIWLKSHETTNILCDMWCGTGKRTQKVGKMKKGHQMQRMSGCQNLQPNLRAQPF
                     VIDPFEIKGVDALVVTHIHSDHLDINTAAAVMQNTNEDVPFIGPQEVVNTWKKWGVPE
                     ERCIVVKPGDSVQVKSIEIQVLEAFDRTALVTADPSVTLKGKLPVDMDEIAVNYLFKT
                     SGGSLYHAGDSHYSNTFAKHGNEHDINVVIGAFGENPRGITDKVTSVDMLRMAESLKA
                     DVVIPVHHDIWTNFQADPKELLLLWEFKRKVLKYQFKPYIWQVGGKFVFPKDKDDLEY
                     HYPRGFDDVFSTDTDLPFPSFL"
     gene            2091..3518
                     /locus_tag="PTC08_001831"
     CDS             2091..3518
                     /locus_tag="PTC08_001831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS ascorbate transporter subunit IIC"
                     /protein_id="HDK5683335.1"
                     /translation="MQIFMNGFTWFSNNILSKPEFFIGIIVFIGYALLKKKLYECFAG
                     FIKATVGYMILTVGAGGLVATFRPILAGLGERFGLKAAVIDPYFGLNAVDGALKSIGL
                     TTSYTMLALLVGFLLNIVVVLLRKFTKIRTLFITGHVMVQQASTVTWIIFLAFPEYRN
                     FVGAILVGIIVGLYWAVGSNLTVGPTQRLTNHSGFAIGHQQMFAIWIVDKIAPKIGNK
                     EKNLDNIKLPKWLSIFHDNIVATGTLMLLFFGTILVILGEDFLRHLDPKKFPETLSFM
                     TYVVSSSLSFAVYLAILMMGVRMFVAELTQSFQGISNKILPGSLPAVDCAASYNFTPQ
                     NAILFGFIFGSIGQFLTILGLLVFHSPVLIITGFVPVFFDNATIAVFANKVGGTRAAM
                     ICSFVSGICQVAIGAIAVVIFQLYKFGGWHGNIDFELIWPGFGALMQHFGLIGYVAIV
                     VILLIIPQLQYRRAKDKAAYDTGFE"
     gene            3542..3820
                     /locus_tag="PTC08_001832"
     CDS             3542..3820
                     /locus_tag="PTC08_001832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004194425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HDK5683336.1"
                     /translation="MLKILAACGNGMGSSMVIKMKIEKCLRELNVSDFVVDYCSVGEA
                     KSQASSYDVVFASKHLIHELEGRTSSKLLGLENLMDDQEIKENLKTVI"
     gene            3833..4300
                     /locus_tag="PTC08_001833"
     CDS             3833..4300
                     /locus_tag="PTC08_001833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HDK5683337.1"
                     /translation="MLSFKESLITEKSVLLNQHADSWEEAVRIAARPLVESEAVKPEY
                     VDAIIKSTHHYGPYYLLMEGMAMPHARPEDGVNRNAFSLVTFDTPVPFSDGKPAQVFV
                     VLAATSAEIHTSIAIPQIVAVFEIENIIEKLSSATSVEEVFAIIDQADMSQYI"
     gene            4317..4955
                     /locus_tag="PTC08_001834"
     CDS             4317..4955
                     /locus_tag="PTC08_001834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000056760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-keto-L-gulonate-6-phosphate decarboxylase
                     UlaD"
                     /protein_id="HDK5683338.1"
                     /translation="MGLPLLQIALDNQNIPDAITTIQQLGDVVDVVEVGTILCLQEGK
                     AAIEVMRALYPDKCILADTKCADAGKTVAQNCKDAGANWMTVICSATLPTMVAARKVM
                     DDLQVELYGDWTFEQAQQWMDNGIQQVVYHQSRDALLAGETWSNADLDKIRRLIEMGF
                     KVSVTGGLELDTIEKFKGLDVYAFIAGRSLREAESPHQAALNFKAEIQRVFG"
     gene            4955..5818
                     /locus_tag="PTC08_001835"
     CDS             4955..5818
                     /locus_tag="PTC08_001835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ribulose-5-phosphate 3-epimerase"
                     /protein_id="HDK5683339.1"
                     /translation="MVYLGIYEKALPNQIDIEEQLKMAADLGFQFLELSIDETDHRLA
                     RLDWGEDKINSIVKAQLDTGVAIQSMCLSGHRRFPFGSADASKRETAMIIMKKAVQLA
                     HQLGIRVIQLAGYDVYYEKKTATSRRLFIEGVREALKIAAEKQIILAIEIMDEPFMSS
                     LTKYMAIKDEIQHPLLKVYPDIGNLSAWPENDVRKELALAAHEIVAVHLKDTRAVTAT
                     YEGQFKNVPFGEGCVDFVNAFRELEAIDYHGPFLIEMWSENAADPRAEIQKAKTFIME
                     QLKESGAYQHE"
     gene            5811..6506
                     /gene="araD"
                     /locus_tag="PTC08_001836"
     CDS             5811..6506
                     /gene="araD"
                     /locus_tag="PTC08_001836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ribulose-5-phosphate 4-epimerase AraD"
                     /protein_id="HDK5683340.1"
                     /translation="MNDAIIKQHVYEANMQLPKNNLVKLTWGNVSVIDRDKGIICIKP
                     SGVPYSKMRPEDMVITDLDGKPFDNQLKPSSDLATHVYLYQHMDNVQSIVHTHSLHAV
                     AYAQAGRDIPAYGTTHADTFYGPVPCTRSLTEAEVATDYELNTGKVIVETFEQRQINP
                     AAIPAVIVNQHGPFIFGKSLKKAVEHTIILEEVAEMAMKSELLKQDMNEIDRFLLDKH
                     YFRKHGATAYYGQ"
     gene            6570..>7410
                     /locus_tag="PTC08_001837"
     CDS             6570..>7410
                     /locus_tag="PTC08_001837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional antiterminator"
                     /protein_id="HDK5683341.1"
                     /translation="MVDFDKKLLCFLDYFKKRQKFKSVSQTAKAIGVSRRMIYYYINK
                     LNDILKLSDMSPISKDDEGYFYIEPLQSTVIETYFHHKASTTNYIFKRDERIILIASA
                     ILLSQKVLRVKTFEDYFDVSKNTVISDLNEVKKWLARYQIPLLNDKKQGYYVDTAVNF
                     ERNVIYEMIKMIEIEDYHALFENMLTFNQEACLIHQYQSFEYEFYRAFDQYEHMLHKK
                     ISLSNKRILCRCLFVTLIFHSERPIALEIHQRQMIEKRLEYYISQQLVEKLKTHMPSI
                     VTEV"
BASE COUNT         2318 a         1138 c         1661 g         2293 t
ORIGIN      
        1 aagatggata gagtagttga aaagacgaat gtaaacgaag taatattaaa ataagttcgg
       61 gttttattta gcgtggatta aaatttgtat tattaactat ttattaactt tgaatttttt
      121 cgtattaaac agtcaagttt ttgatatgtt aattcttgtg ttgataattt tgtgtttttt
      181 attagcgaat agtattttaa ataaccattc attcataaaa cgccggatat tatgatgcag
      241 tcaaatatgc catgaaaaaa attaatgtta ttagtgataa ggttttctaa agggaggtca
      301 aaatggtaaa aacgatttat tttgtaagac atgcgacgag ggagcatacg gtgaagtctg
      361 atacggcgcc attatcagaa aaagggcgac gagaggcaga aaaccttgtg aagtggtttg
      421 aggggaaaca tgtcgatgcc atttatgcga gtccatatgc gcgtacgctt gaaactgtag
      481 taccacttgc acgtgtgaac aatataaata ttcaagtaga ggatggctta agagaacgcg
      541 tcatcggtga atgggtggat gattttgata catacgctgc tgaacaatgg atgaattttg
      601 attatcgctt acttggaggg gagtcgttga aacaagtgca gaaacgtatc gtatcgagtt
      661 ttcaggacat tttgtcacaa gagaaaggtg agaccattgt gatcagtggt catggtacgt
      721 cactcgctgt gctctttcat acgttgacag atggtacatt tgcttatgaa aagttcaaac
      781 agatgtcgat gcctgatgtt tatacttacg acgttgatac aaaagtttta aaacgcgcat
      841 atttgaactg atgaatgctt gaaattgaat attttgatgc gctaacagtc cagtgatgta
      901 catgtttttt gtacatatat tggacttttt cttttataac aataggcata aactgagaat
      961 aagtaagcgt ttacatattt tgaaaggagt gcatgacttt gaatcatatt aatgaagtaa
     1021 caaaggaaaa gtggattttg aatacttttc cggaatgggg cacttggctc aacgaagaaa
     1081 tagaaaatga ggttgtggaa gaaaatactt ttgccatgtg gtggttaggt tgtacaggta
     1141 tttggttgaa atctcatgag accacgaata ttttgtgcga tatgtggtgt ggtacgggta
     1201 agcgtacgca aaaagttggg aaaatgaaaa aagggcatca gatgcaacga atgagtggtt
     1261 gtcaaaattt acaaccgaat ttacgagcgc agccttttgt cattgacccg tttgagatta
     1321 aaggtgtgga tgctttagtg gtgacgcata ttcactcaga tcatttggac atcaatacag
     1381 cggctgcagt gatgcaaaat acgaatgaag atgtcccgtt tattggtcct caagaagtgg
     1441 tcaacacatg gaaaaaatgg ggtgtgcctg aagaacgctg tatcgtcgtt aagccgggtg
     1501 attccgttca agtgaaaagt attgaaattc aagtgttgga agcgttcgac cgtaccgcac
     1561 tcgtaacagc agatccttct gtaacattga aaggtaagtt acctgtggat atggacgaaa
     1621 tcgcggtgaa ctacttattc aaaacgtctg gcggttcact gtatcatgcg ggtgattcac
     1681 attattcgaa tacatttgcg aaacacggca atgaacacga tatcaatgta gtcatcggtg
     1741 catttggtga aaatccaaga ggaattacgg acaaagtgac atcggtggat atgcttagaa
     1801 tggcggaaag tttaaaagca gatgttgtca ttccagtgca tcatgacatt tggacgaatt
     1861 tccaagcaga tcctaaagaa ttgttattac tatgggagtt taaacgtaaa gtattaaagt
     1921 atcaatttaa gccttacatt tggcaagttg gtggtaaatt tgtattcccg aaagataaag
     1981 atgatttaga gtaccattac ccacgtggtt ttgatgatgt attctctaca gatactgatt
     2041 tacctttccc atcattttta taagccatat gcatgatagg agggaatcac atgcaaatat
     2101 ttatgaatgg gtttacgtgg tttagtaaca atattttatc taaaccagag tttttcatag
     2161 gcattattgt atttattggt tacgcattat tgaaaaagaa actttatgaa tgttttgcgg
     2221 gctttattaa ggcaacagtg ggttacatga ttttaacggt aggtgcaggg ggcttagttg
     2281 cgactttccg accaattctt gcagggttag gggaacgttt tgggttgaaa gcggccgtta
     2341 ttgatcctta ctttggctta aatgcagttg atggcgcgtt gaagtcaatc ggtttaacga
     2401 cgtcatacac gatgctagcg ctattggtgg gctttttact caatatcgtt gttgtgttgt
     2461 tacggaaatt cactaaaatc agaacattat ttattacagg acacgtcatg gtgcaacagg
     2521 cgtcgacggt gacttggatt attttcttag catttccaga gtatcgtaac tttgtcggtg
     2581 ccattttagt cggtattatc gtagggctat attgggctgt aggttcaaat ttaacggttg
     2641 gtccaacaca acgtttaacg aatcattcag gatttgcgat tggtcaccaa caaatgtttg
     2701 cgatttggat cgttgataaa attgcaccta aaatcggcaa taaagagaag aacttggaca
     2761 atattaaact gccgaaatgg ttgtctattt tccatgataa tatcgttgct acagggacat
     2821 tgatgttact tttctttggt acgattttag ttattttagg tgaagacttc ttgcgtcatt
     2881 tagatcctaa aaagttccct gagacattat cttttatgac atatgtcgtt tcaagttcgc
     2941 tatcgtttgc agtatatctt gcaattttaa tgatgggtgt gagaatgttc gttgccgagt
     3001 taacgcagtc tttccaaggt atttcaaaca aaattttacc tggctcactg cctgctgttg
     3061 actgcgccgc atcttataac tttacacctc aaaatgcgat tttatttggt tttattttcg
     3121 gctctatcgg acaattttta acgattctcg gtttgcttgt gtttcattca ccagtattaa
     3181 ttattaccgg attcgttcct gtgttctttg acaatgccac aattgcagtg tttgcgaata
     3241 aagtcggtgg tacacgtgct gctatgattt gttcgtttgt ttcaggtatt tgtcaagttg
     3301 cgataggtgc cattgcagtg gtcattttcc aactgtacaa atttggagga tggcatggca
     3361 atatcgactt tgaattaatt tggccaggtt tcggtgcgtt gatgcaacat tttggtttga
     3421 ttggttacgt ggcgattgtc gttattttat taatcattcc acagttgcaa tatcgtcgcg
     3481 ctaaagataa agcagcatat gatacaggat tcgaataaga tgaagaaatg agggaaatat
     3541 catgttaaaa attttagcag cttgcggtaa tggtatggga agttcgatgg tcattaagat
     3601 gaaaattgaa aaatgtttac gcgaattaaa cgtgagtgat tttgttgtag attattgcag
     3661 tgtcggtgaa gcgaaatctc aagcaagtag ttatgatgtc gtttttgcga gtaaacattt
     3721 gattcacgag ctagaagggc gtacttctag caaattgctc ggtttagaaa atttaatgga
     3781 tgatcaagaa attaaagaga acttaaaaac tgtcatttaa aggtgatgtg tgatgttatc
     3841 gtttaaagaa agcttaatta cagaaaaatc agttttgtta aatcaacatg cagactcatg
     3901 ggaagaagct gtccgtattg cggcgcgtcc attagttgaa agtgaagcgg taaaaccaga
     3961 atatgttgat gccattatta aaagtacgca ccattatggg ccatattact tgttaatgga
     4021 agggatggca atgccgcatg cgcgtcctga agatggtgtg aacagaaatg ccttttcatt
     4081 agtcacattt gatacgccgg ttccattttc ggatggtaag cctgcgcaag tgtttgtcgt
     4141 actagcggca acctctgcag aaattcatac aagtattgcg ataccacaaa tcgttgcggt
     4201 ttttgaaatc gagaacatta ttgaaaaatt aagttcggcg acttcagttg aggaggtatt
     4261 cgccattatt gatcaagctg atatgagtca atatatataa cattggaggt ttagcaatgg
     4321 gattaccatt attacaaatt gctttagata atcaaaatat tccagatgca attactacga
     4381 ttcaacaact cggtgatgtc gttgatgttg tagaagtggg aacaatttta tgtttacaag
     4441 aaggaaaggc tgccattgaa gtaatgcgtg cgctatatcc tgataagtgt atacttgcgg
     4501 atacgaaatg tgcagatgca ggtaaaacgg tcgcacaaaa ctgtaaagat gctggtgcaa
     4561 actggatgac ggtcatttgt tctgcaacac taccaactat ggtggctgca cgcaaagtga
     4621 tggatgactt acaagttgaa ctttatggcg actggacatt tgaacaagca caacaatgga
     4681 tggacaatgg tattcaacaa gtcgtctatc atcaaagtcg ggatgcattg ttagcaggtg
     4741 aaacatggtc aaatgcagac ttggataaaa ttcgtcgact gattgagatg ggctttaaag
     4801 tttcagtaac gggtggatta gaactcgaca cgattgaaaa atttaaaggc ttagacgtgt
     4861 atgcctttat agcggggcgt agtttaagag aagcagaatc accacaccaa gcggctttaa
     4921 attttaaagc tgaaattcaa agggtgtttg gataatggtg tatttaggca tttatgaaaa
     4981 agcattgccc aatcaaatcg acattgaaga gcaattaaaa atggctgcgg atttgggatt
     5041 tcaatttttg gagttatcca ttgatgagac ggatcaccgg ttggcacgtt tagactgggg
     5101 agaagataaa attaacagta ttgtgaaggc gcaactcgac acaggtgttg cgattcaaag
     5161 tatgtgttta agtggccacc gccgttttcc atttggttca gctgatgcat ctaagcgtga
     5221 aacagcaatg attatcatga aaaaagccgt tcaactcgca catcaactcg gcattcgtgt
     5281 gattcagtta gcgggctatg atgtgtatta tgagaagaaa acagcaactt caagacgttt
     5341 gtttatcgaa ggtgtacgtg aagcattaaa aatagctgcg gaaaaacaaa tcatactcgc
     5401 aatcgaaatt atggacgagc catttatgtc gagtctaacg aaatacatgg cgattaaaga
     5461 cgaaattcaa cacccgttat tgaaagtgta tccagatatc ggtaatttgt cagcttggcc
     5521 tgaaaacgat gtaagaaaag aattagcatt agcggcgcat gaaattgtcg cggtacattt
     5581 gaaagataca cgagcagtga cggcaactta cgaaggtcag tttaaaaatg tcccttttgg
     5641 agaaggatgt gttgattttg tgaatgcatt tcgtgagcta gaggctatcg attatcacgg
     5701 accattttta attgaaatgt ggtcagaaaa tgctgccgat ccacgagcag aaattcaaaa
     5761 agctaaaacc tttattatgg aacaattaaa agagagtggt gcatatcaac atgaatgatg
     5821 caattatcaa acaacatgtt tatgaagcga atatgcaatt acctaaaaat aatttggtaa
     5881 aattgacatg gggaaatgtg agtgtgattg accgtgacaa aggcatcatc tgtattaaac
     5941 cgagtggtgt gccgtattct aaaatgagac ctgaagatat ggtgataaca gatttagacg
     6001 ggaaaccttt tgataatcaa ttaaagccgt cgtcagattt ggcaacacat gtctacttat
     6061 atcaacatat ggataatgtt caaagtatcg tccacaccca ttcgttacat gccgtagctt
     6121 atgcccaagc aggtcgtgat attcctgcat atggcacgac acacgcagat acgttttatg
     6181 ggccggtacc gtgtacgaga agtttgactg aagcagaagt agcgacggat tatgagttga
     6241 atacaggcaa agtcatcgta gaaacatttg aacaaagaca aattaatcca gctgcgattc
     6301 cagcagtgat tgtgaatcaa catggtccgt ttatctttgg taaatcttta aagaaagcag
     6361 tagaacatac gattatttta gaagaagttg ctgaaatggc aatgaagtct gaattgttga
     6421 agcaagatat gaatgaaata gatagatttc tattagacaa acattatttt agaaagcatg
     6481 gtgctactgc ttattacggt caataaaaca cgtaagtcat tccttttctc atataaagtc
     6541 tgatgatatt gaaggaagtg tgatttctga tggttgattt cgataaaaaa ttgttgtgct
     6601 ttttagatta ctttaaaaag cgacaaaagt ttaaaagtgt gagtcaaact gcgaaggcca
     6661 ttggtgtatc gcgacgtatg atttattact atattaacaa attgaacgac attttaaagc
     6721 tgtcagacat gtctccgata tcaaaagatg acgaaggtta cttttatatt gaaccgttgc
     6781 agtctacggt gattgaaaca tattttcatc ataaagcatc cacgacgaat tacattttta
     6841 agagggatga acgtattatt ttgatagcat ccgccatttt gttaagtcaa aaagtgctca
     6901 gagtgaaaac ctttgaagac tattttgatg tgagtaaaaa taccgtcatt agcgatttga
     6961 atgaagtgaa aaagtggttg gctcgctatc aaatccctct tttaaatgat aaaaaacaag
     7021 gctattacgt tgatacagct gtgaattttg aacgcaatgt catttatgaa atgattaaaa
     7081 tgatcgaaat tgaagattat catgcattat ttgaaaatat gctgaccttt aatcaagaag
     7141 cgtgtctcat tcatcaatat cagtcatttg aatatgagtt ttatcgtgct tttgatcagt
     7201 atgaacatat gttacataaa aagatatcgc tatcgaataa acgaatttta tgtcgatgtt
     7261 tgtttgtaac cctcattttt cactcagagc gaccgattgc attggaaatt catcaacgtc
     7321 aaatgattga gaaacgttta gaatattata ttagccaaca gttagtcgaa aaattaaaga
     7381 ctcatatgcc gtcgatagtg actgaggttc
//
LOCUS       DANHOL010000116         7363 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.117, whole genome shotgun sequence.
ACCESSION   DANHOL010000116 DANHOL010000000
VERSION     DANHOL010000116.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 7363)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7363)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7363
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.117"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(620..982)
                     /locus_tag="PTC08_001838"
     CDS             complement(620..982)
                     /locus_tag="PTC08_001838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016424340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF423 domain-containing protein"
                     /protein_id="HDK5683342.1"
                     /translation="MKVFIILGALNALMAVGTGAFGAHALDGKLSEHYMSVWEKATTY
                     QMYHGLGLVLIGIIGGALNLNVGWAGWLMFLGIVFFSGSLYILSLTQVSVLGAITPIG
                     GILFVISWLMLAIAAFKL"
     gene            complement(1010..1333)
                     /locus_tag="PTC08_001839"
     CDS             complement(1010..1333)
                     /locus_tag="PTC08_001839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5327 family protein"
                     /protein_id="HDK5683343.1"
                     /translation="MNKDKLIQLLEHELVQADAATTDAAFEKHIYAIHALTALYTGQE
                     TSAPSRSSSTVTPKRQVSTQVTDEEIRMMGGKVSSSSATAQTTSDQRMVTDDEIGNGA
                     SIFDF"
     gene            complement(1326..1994)
                     /locus_tag="PTC08_001840"
     CDS             complement(1326..1994)
                     /locus_tag="PTC08_001840"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HDK5683344.1"
                     /translation="MDWSTIFHEIKEKHDFKAMHDFLEKEYTTQIVYPERENIYQAFD
                     LTPFENVKVVILGQDPYHGPNQAHGLAFSVQPGAKFPPSLRNMYQELADDIGCQRTSP
                     HLQDWAREGVLLLNTVLTVRQGQAHSHKDIGWETFTNEIIQAISDHKKGVVFVLWGRP
                     AQQKERLIDTSRHYVIKSPHPSPLSAHRGFFGSKPYSKTNAYLEAQGLAPIHWCEQKE
                     EAYE"
     gene            2184..3014
                     /gene="thiD"
                     /locus_tag="PTC08_001841"
     CDS             2184..3014
                     /gene="thiD"
                     /locus_tag="PTC08_001841"
                     /EC_number="2.7.1.49"
                     /EC_number="2.7.4.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001185456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional hydroxymethylpyrimidine
                     kinase/phosphomethylpyrimidine kinase"
                     /protein_id="HDK5683345.1"
                     /translation="MALKKVLTIAGSDTSAGAGMQADLKTFQELDTYGMVALAAIVTM
                     DKETWSHDVSPIPFDVFNKQLETVISVGPDAVKTGMLGSEEIIQRAGEAYTESGAKNF
                     VVDPVMVCKGENEVLNPGNTEAMIKYLLPKATVATPNLFEAGQLSGLGTLKSIEDMKK
                     AAKIIHEQGAQHVVIKGGKALDQDKSYDLYYDGNKFYQLTTDMFQQSYNHGAGCTFAA
                     ATTANLANGQTPKEAVINAKAFVASAIKNGWKMNDYVGPVDHGASNRVEQIEVEVTEI
                     "
     gene            complement(3159..3416)
                     /locus_tag="PTC08_001842"
     CDS             complement(3159..3416)
                     /locus_tag="PTC08_001842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683346.1"
                     /translation="MCFSTEDVQHYLALVNDTNPIHTDIVPGQLVVQYVCVEAGVEPI
                     AVRYKNTIGVDEQVTWQRDNMQIQVSGIDEQLKIVIEVKAS"
     gene            complement(3416..3787)
                     /locus_tag="PTC08_001843"
     CDS             complement(3416..3787)
                     /locus_tag="PTC08_001843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683347.1"
                     /translation="MQHFLNVGDREVKAYCFDKSAVQRYQQFFNMPQTTTVPLLMTAR
                     VWPLFSLFRPFKETAIRLVATEIETHYPLKVGEHYQVTMAVLKVQQIKSFQRYQMALS
                     FDQADTCHCRIIQTFVSRRVS"
     gene            complement(3756..4901)
                     /locus_tag="PTC08_001844"
     CDS             complement(3756..4901)
                     /locus_tag="PTC08_001844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiolase family protein"
                     /protein_id="HDK5683348.1"
                     /translation="MTKAVIVAAKRTPIGVYGGQLQKWEPEHLLKPLFEHFEATLSCS
                     LNDLDDVILGNIVGKGGNIARKSLLEAGIDVSVPGLTVDRQCGSGLEAIHLASRLVES
                     GAGDFYIAGGVESTSRAPWKMEKPTSLYPTTPPTFYERAPFAPVGQDPTMIEAADNVA
                     KQYDVSREDQDRFAIQSHHRASKAIATGAMSAEILPLIVKGQQMIQDESVKPHLQYER
                     IARLKPLREGGTVTVGNCCLKHDGACLVVVMSEQKARELGMSEGLMFMDYAVEGVDPH
                     VLGIGPVPAVQRILERQQRTIDQIDAVELNEAFSAQVLASARALNIQEAQLNHYGGAI
                     AIGHPYSASGAILVTRLFYMKDAQSTIATMGIGGGMGNAALFERWRP"
     gene            complement(4898..6247)
                     /locus_tag="PTC08_001845"
     CDS             complement(4898..6247)
                     /locus_tag="PTC08_001845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HDK5683349.1"
                     /translation="MLKRLETYAVERPEHIAIRMDDVTLTYETLWRDVQKESEALPTN
                     ISHQNVMLTHTQTLDFIVAYLAALVRQGVPCVLGPQWSTEQRDALIKLHRMPYVWGDE
                     GLTSTSHEPAHKAPMIPQCLHIGFTSGTTGLPKGFMRDLPSWIASFEVNDTLLDASTQ
                     TYMALGPYAHSLTLYVLIYALWNGKTFIGQDRYDMAKSLVYAAELQQTCALFIVPTMV
                     YDGIHLGEQSQWVRHIFISGDKLPASRHTQLKKIFPESAIDEFFGTSEASFISVNRNQ
                     TAPLDSVGRLFPNVTVTLRERDDAGIGQLFVKSPMTFSGYLGEASVNEWIATGDYARI
                     ENDVLYLKGRVQDRLIIGGKNVYPAVIEQHLKQRPEIVDVVIVRLPHDKLGELAIALY
                     TGPEQLDIQAVRHWLSSRVSRYEIPSKFIYVATLPYTESGKVSRKMAQTCYERGDYQ"
     gene            complement(6458..7144)
                     /locus_tag="PTC08_001846"
     CDS             complement(6458..7144)
                     /locus_tag="PTC08_001846"
                     /EC_number="5.4.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-diphosphoglycerate-dependent
                     phosphoglycerate mutase"
                     /protein_id="HDK5683350.1"
                     /translation="MPKLILCRHGQSVWNAENLFTGWADVDLSEQGHNEAITSGKKLK
                     EQEIQIDIAFTSLLKRAIKTTFHLLNESNQLYVPVVKSWRLNERHYGGLQGLNKDEAR
                     QQFGEEQVHIWRRSYDTPPPAQDEAQRERYLKDRKYELLDRRVMPESESLKDTLVRVI
                     PYWNDQISQELLADKTVLVAAHGNSLRALIKYLEGVSDEDIVGYEIKTGAPLIYELTD
                     DLKVIDKYYL"
BASE COUNT         2100 a         1652 c         1374 g         2237 t
ORIGIN      
        1 taaattaatt acattggtga ctaagtgctt ttccagattt aacttcaggc tttttatatt
       61 ttacttttgt ttcctctttc atcttaaaat cccccttttc aattaatgcg aaactacaat
      121 attaattata tattacactc caaaaaatgc aagcgctttc ttaatcttgg atttcaatct
      181 tgtgaatgaa taaacaaact cactccccat aatacttaat tcttctgatt gttagtatag
      241 taatcagaag caattctaaa tttatattta atataacctt ccgttgcggt tgagattcac
      301 gaggttacgt gtgcatactg ctgatagtta cttcttttct ttatagtgat tactgtttaa
      361 taccagtagc tgtctgactt cacaatgcct ttactttcga gaagtctagt caatctttcg
      421 tggcagtact acaaagtcca tttggcttcc atcaaatgta cactttaatc aagctaaatt
      481 gagttgagac aagtctctag gaaagcgaat tcttgatgcc aatcgtaaaa atgattcttc
      541 atattagaga gcaagttacg tcaaatacaa caaaaaagac agacgtttgc ctgccttttc
      601 aaactggatt cgaatgaact tataatttaa atgctgcgat ggcaagcatg agccagctaa
      661 tgacaaacaa aatgccacca attggcgtaa ttgcaccaag cacgctcact tgtgttaaag
      721 ataagatata cagtgaacca ctaaagaaca cgatacctaa aaacatgagc caacctgccc
      781 agccgacgtt aaggttaagt gcaccaccaa taataccaat aagcacaaga cctaacccat
      841 gatacatttg atatgttgtc gctttttccc ataccgacat ataatgctct gataactttc
      901 cgtccaatgc atgtgcaccg aaagcccctg tacccactgc cattaaagcg ttcagtgcac
      961 ctaaaataat aaataccttc acaatattcc ctcctcatca aagtgatcat taaaaatcaa
     1021 aaattgaagc accatttcct atttcatcat ccgtgaccat acgttgatca gatgtcgttt
     1081 gtgcggttgc gctagaagat gatactttac cgcccatcat ccgaatctct tcatctgtca
     1141 cttgtgtcga cacttgtctt ttcggtgtga cggttgaaga tgaacgtgat ggtgcgcttg
     1201 tctcttgccc cgtatacagc gccgttaaag catgaatggc atagatatgt ttttcaaacg
     1261 cagcatcagt cgtcgcggca tctgcttgaa ccaattcatg ttccaacagt tgaatcagtt
     1321 tgtctttatt catacgcttc ctccttttgt tcacaccaat ggattggcgc taaaccttgt
     1381 gcttcaagat aggcattcgt tttggaatac ggtttggaac caaaaaaacc tctatgtgcc
     1441 gataatggac tcgggtgtgg tgatttaatg acatagtgcc gtgatgtatc aatcaatctt
     1501 tctttttgtt gtgccggtct gccccacaat acaaagacga cacctttttt atgatcagat
     1561 atcgcttgga taatttcatt cgtaaatgtt tcccagccaa tatctttatg tgaatgtgct
     1621 tggccttgac gcactgtaag caccgtattc aatagcagca caccttccct cgcccaatct
     1681 tgtaaatgtg gcgacgtccg ttgacagcca atatcgtcag cgagttcctg atacatattg
     1741 cgcaatgaag gtggaaattt cgcacctggt tgtactgaaa aagctaaacc gtgtgcttga
     1801 ttcggaccat gatagggatc ttgtcctaat atcaccactt tgacattttc gaatggcgtg
     1861 aggtcaaaag cttgataaat attttcacgc tcggggtaaa caatttgcgt cgtatattct
     1921 ttttctaaaa agtcatgcat cgctttaaaa tcatgctttt ctttaatttc atgaaatatt
     1981 gttgaccaat ccatcttctt cacctcagcc acattttaac ataatttcgc ctcgctcacc
     2041 gctatgattc aataaacatt tttatagcag ctgttcaatg tgcatgctaa aatggggaac
     2101 ataagcatat tgtagcgtac agcagttacc atactcatta tggtatgatg taatagatgt
     2161 acaattgaag gagtgaatga acgatggctt tgaaaaaagt attaacgatt gcaggatcag
     2221 acacaagtgc aggtgcgggg atgcaagccg acttaaaaac tttccaagag ttagatacgt
     2281 acggtatggt tgcacttgca gcgattgtga caatggataa agaaacttgg tcacatgatg
     2341 tgagccctat cccatttgat gttttcaaca agcaacttga aacagtcatt agcgtaggac
     2401 ctgatgcagt caaaacaggt atgctcggta gcgaagaaat catccaacgt gctggagaag
     2461 catacacaga atcaggcgca aaaaatttcg tagtagatcc tgttatggta tgtaaaggtg
     2521 aaaatgaagt ccttaacccg ggaaatactg aagcgatgat taaatattta ttaccgaaag
     2581 caactgttgc gacaccgaac ctttttgaag caggtcaatt atctggttta ggtacgttga
     2641 aatctattga agatatgaaa aaagcagcaa aaatcatcca cgagcaaggg gcacaacacg
     2701 tggtgattaa aggtggtaaa gcgttagatc aagataaatc atacgactta tactatgatg
     2761 gcaacaagtt ctaccagtta acaacggaca tgttccaaca aagttacaac cacggggcag
     2821 gctgtacatt tgcggcagcg acaacagcca acttagcgaa tggtcaaaca ccaaaagaag
     2881 ccgtgattaa tgcgaaagcg ttcgtagctt ctgccattaa aaacggttgg aaaatgaacg
     2941 attatgttgg ccctgtcgat cacggtgcat caaatcgtgt tgaacaaatt gaagttgaag
     3001 tgactgaaat ttaatttcct tctcactcag attcaaactc agtatttaaa taaacatggc
     3061 taaaaccttg atgtattata ttgttgagct ccgttatctc gttcacatta tgatacatca
     3121 aggttatttt tttgagattg ggcaattccc ttgctctcct aggacgcttt tacttctatc
     3181 acgattttca gttgttcatc tattcccgac acttgaattt gcatgttgtc acgctgccaa
     3241 gtgacctgtt catcaacccc aatagtattt ttataacgta ccgctatcgg ttcaactcca
     3301 gcctcgacac atacatattg gacgacgagt tggcctggga caatatccgt atgtatcgga
     3361 ttcgtgtcat tcaccagtgc taaatagtgc tgcacgtctt ctgttgaaaa acacatcatg
     3421 acaccctccg actgacaaaa gtttgtatga ttcgacaatg gcatgtatca gcttgatcga
     3481 atgataatgc catttgataa cgttgaaatg acttgatttg ttggactttt aatacggcca
     3541 ttgtcacttg ataatgctcg cctactttta aagggtaatg tgtttcaatt tctgtagcta
     3601 cgagtcgaat tgctgtttct ttaaatggtc gaaatagcga aaaaagtggc catacgcgtg
     3661 cagtcattaa taaagggacg gtggtcgtct gtggcatatt aaaaaattgt tgataacgct
     3721 ggactgcact tttgtcgaaa cagtaagctt taacttcacg gtcgccaacg ttcaaaaagt
     3781 gctgcattgc ccatgccccc tccaatgccc attgtcgcaa tggtactttg tgcatctttc
     3841 atgtaaaaca gacgggtcac taaaatcgca ccactcgcac tatacggatg accgatcgca
     3901 atcgcaccac cgtaatgatt caattgcgcc tcttgaatgt tcaacgcacg tgcagacgct
     3961 aacacttgcg cgctaaaagc ttcattcaat tctacggcat caatttggtc tatcgtccgt
     4021 tgttgtcgtt ctaaaatgcg ctgcactgcg ggtacaggac cgatgcctaa tacatgtgga
     4081 tccacccctt caaccgcata atccataaac atcagacctt ccgacatacc gagttcgcgt
     4141 gctttttgtt cagacatgac gacaactaga caggcgccgt cgtgtttgag acaacaatta
     4201 ccgactgtca ctgtcccacc ttcacgtaat ggctttaacc gtgcaatccg ctcatactga
     4261 agatgcggct taacactttc atcttgtatc atttgctgac ctttcactat tagtggcaat
     4321 atttcagctg acatcgcacc tgtcgcaatc gctttacttg cacgatgatg gctttgaatc
     4381 gcaaaacgat cttggtcttc acgtgacaca tcatactgtt ttgccacgtt gtctgccgct
     4441 tcaatcatag tcggatcttg acctactggc gcaaatggcg cacgctcata aaatgtcgga
     4501 ggtgtcgttg gatacagtga tgtcggcttt tccattttcc aaggtgcacg actcgtactt
     4561 tcgacacccc ctgcaatata aaagtctcct gcaccgcttt caacgagtcg actcgccaaa
     4621 tgaattgctt caaggcccga accgcattga cgatcaaccg tgagacctgg aacagacaca
     4681 tctatccctg cctcgagcaa actttttcgc gcaatattgc cccctttacc gacaatatta
     4741 ccgagaatga cgtcatctaa atcattgagt gaacaagata atgtcgcttc aaaatgttcg
     4801 aataacggtt tcagtagatg ctccggctcc catttttgaa gttgaccgcc atacacgcca
     4861 attggtgtcc gttttgctgc aacaatgact gctttcgtca ttgataatca cccctttcat
     4921 agcaagtttg tgccattttt ctcgaaactt tcccactctc agtatatggt aatgttgcga
     4981 cgtaaataaa ttttgacggt atttcatatc tcgatacacg tgatgacaac cagtgccgta
     5041 ccgcttgaat gtccaactgt tccggacccg tataaagggc aatcgctaac tcacctagct
     5101 tatcatgtgg aagtcgtaca atgaccacat ctacaatttc gggcctttgc ttgaggtgtt
     5161 gttcaatcac agcaggatac acattcttcc caccaataat caagcggtct tgtacacgcc
     5221 cttttaaata cagcacatca ttctcgatac gggcgtaatc acctgtcgct atccattcat
     5281 taacggaggc ctcaccgaga taacctgaaa atgtcatcgg gcttttcaca aacaattgtc
     5341 ctattccggc atcatctcgt tcacgtaatg tcactgtcac atttggaaat agacgcccca
     5401 cagaatcgag tggtgcagtt tgattacgat tgacactaat aaagctcgct tccgacgtgc
     5461 cgaaaaactc atcaatcgcg ctttcaggaa atatcttttt gagttgtgtg tgacgactgg
     5521 cgggcaattt gtctccagaa ataaaaatgt gacgtaccca ctgtgactgt tctcctaaat
     5581 ggatcccatc gtacaccatt gtaggtacga taaacaatgc acacgtttgt tgaagttctg
     5641 cagcatatac caaacttttt gccatatcat agcgatcttg cccgataaac gttttgccat
     5701 tccataacgc ataaatcagc acatacaacg ttaacgaatg agcatacgga ccgagtgcca
     5761 tatacgtctg tgtagaggcg tcgagcaacg tatcattcac ttcaaatgaa gcaatccatg
     5821 acggtaaatc cctcataaac cctttcggta aacctgtcgt acctgacgta aacccaatat
     5881 gtaagcattg cggaatcatt ggcgctttat gtgcgggttc gtgtgaagta gatgtcaatc
     5941 cttcatctcc ccatacataa ggcatacggt gtaacttaat gagcgcatcc cgttgttccg
     6001 ttgaccattg cggtccgagc acacacggca caccttgacg tacgagggcc gctaaataag
     6061 ctacgataaa gtccaacgtt tgggtatgcg tcaacattac attttgatgc gatatattcg
     6121 tgggcaatgc ttcactttcc ttttgcacat ctcgccacaa cgtttcatag gtgagcgtca
     6181 catcgtccat cctaatcgca atatgttccg gtctttctac ggcatatgtt tcaagtcgct
     6241 ttaacaattc caaacttcat cacactactt ttacaatttt tctttatttt aacatagcgt
     6301 gcactttcca catatgtgga tttcattttg cccctccatc tttcatatgt ggtcatcatg
     6361 caaaatttaa tgtgatgcca actcatccat attgatgcat ttccatgtga aaaggccggg
     6421 tcatcgtgaa atgcccagcc ttaaaataat acagttgtta taaataatat ttgtcaataa
     6481 cttttaaatc atctgtcaat tcgtaaatca gtggcgcacc tgttttaatt tcatagccga
     6541 cgatatcttc atctgatacg ccttctaaat atttaatcaa agcacgtaat gagtttccat
     6601 gggccgctac aagtactgtt ttatcagcta ataattcttg agaaatttgg tcgttccaat
     6661 atgggatgac acgcaccaaa gtatctttca aactttcaga ttcaggcatc acgcgtctat
     6721 ctaataattc gtatttgcga tcttttaaat agcgttcgcg ttgtgcttca tcttgtgctg
     6781 gcggaggtgt atcgtaagaa cgtctccaaa tgtggacttg ttcttcacca aattgctgac
     6841 gtgcttcatc tttatttaat ccttgtaaac caccgtaatg acgttcattc aaacgccacg
     6901 atttaacaac gggtacatag agttgattag actcatttaa taaatgaaac gtggtcttaa
     6961 tcgcacgctt taataacgag gtaaatgcaa tatcaatctg aatttcttgt tctttcaatt
     7021 tttttcctga tgtgatagct tcgttgtgac cttgttcgga taaatcgacg tctgcccatc
     7081 ctgtaaataa gttttcagca ttccagacgc tttgtccgtg tctgcataaa ataagttttg
     7141 gcatgtttta ccttctttct atatcgtgaa cgccagtgtc gcaacatttg ttgatcaaaa
     7201 aagacgttca cgtactcata ttgtaccaac aaatgcgctt actttatttt ataaattgat
     7261 tataacaagt tttttatgct ttttcatgat tccaacatga taaaatttga atatattaag
     7321 tcatttgctc gaaatcggat ataaaacttt tcggtcatct gaa
//
LOCUS       DANHOL010000117         7318 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.118, whole genome shotgun sequence.
ACCESSION   DANHOL010000117 DANHOL010000000
VERSION     DANHOL010000117.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 7318)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7318)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7318
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.118"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            161..1246
                     /locus_tag="PTC08_001847"
     CDS             161..1246
                     /locus_tag="PTC08_001847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000171355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Glu/Leu/Phe/Val dehydrogenase"
                     /protein_id="HDK5683351.1"
                     /translation="MAMIFEKMAQADYEQLVFCHDETTGLKAIICIHDTTLGPALGGC
                     RFWNYESEEDAIVDVMRLAKGMTYKNAAAGLNLGGAKTVVIGDPKTDKSEAFFRALGR
                     YIHSLDGRYITAEDVGTTVEDMDFIRLETPYVTGVSESYGSSGNPSPMTALGVYYAMK
                     RTAKEAFGSDSLDGKTVAVQGVGNVAYHMCKYLHEEGAKLIVTDINEEAVQRAVNDFN
                     AEAVGINDIYQVDADIFAPCALGGILNDKTIPELKVKMICGSANNQLLEENKHGQMLE
                     ERGITYAPDFVANSGGVINVADELYGQYNRERAEKKVKNIYEQMDKIFTIAKEEGILP
                     LQAAEHLAESRIDTMMRVHSKYSATQK"
     gene            1567..2637
                     /locus_tag="PTC08_001848"
     CDS             1567..2637
                     /locus_tag="PTC08_001848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit IIC"
                     /protein_id="HDK5683352.1"
                     /translation="MEVAEQRMTFKTFMFKVLNGLAIAIIAGLIPNAVLGGLFKYLSQ
                     YADIFATMNQVVLGVQFALPIMVGVLIALQFNLNPMATALVGAASFVGSGAAKVTQAG
                     WQLVGIGDLINTMITASIAVLIVLWLGNRLGSLNVILLPILVGGGAGLIGVATLPYVS
                     KITLAIGSLVNTFTTLQPVLMGVLIAVLFSFIIVSPISTIGVGLAIGISGLAAGSAAI
                     GVAVAAVVLFIGTLRVNKIGVPIAILLGGMKMMIPNIIRYPILLLPIGITAAVTGAAG
                     ALFGISGVKETAGFGIVGLVGPIKALELMDGNGMTNLLIVLAVFFVIPLVVGFIVDYI
                     LWKVLKLYDSEIYRFTATEDNK"
     gene            2934..5183
                     /gene="pflB"
                     /locus_tag="PTC08_001849"
     CDS             2934..5183
                     /gene="pflB"
                     /locus_tag="PTC08_001849"
                     /EC_number="2.3.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate C-acetyltransferase"
                     /protein_id="HDK5683353.1"
                     /translation="MIKDTQTTHNAWEGFKTGRWTRHVDVREFIQLNFTGYQGDDSFL
                     AGPTEATTKLWDQVMVLSKEERERGGIWDMDTKVPSTILSHDAGYLDESLEQIVGVQT
                     DKPFKRSMQPFGGIRMAKAACEAYGYELDKETEHIFTEYRKTHNQGVFDAYSKEMLAC
                     RKAGIITGLPDAYGRGRIIGDYRRVALYGVDFLMAEKQKDFNDLSSTMTEDVIRLREE
                     VSEQYRSLNELKQLGERYGFDLSRPAENFKEAVQWLYLAYLAAIKEQNGAAMSLGRTS
                     TFLDIYAERDLQAGTITETEVQEIIDHFIMKLRLVKFARTPDYNALFSGDPTWVTESI
                     GGVGIDGRPMVTKNSFRFLHSLDNLGPAPEPNLTVLWSTRLPENFKRYCTKMSIKTSS
                     IQYENDDLMRESYGDDYGIACCVSAMRIGKQMQFFGARANLAKTLLYAINGGKDEKSG
                     AQVAPNFAPIQSEILDYDEVYQQFDEMMEWLAGVYINSLNVIHYMHDKYSYERIEMAL
                     HDTDVHRTMATGIAGLSVAADSLSAIKYGQVRTIRDENGLVVDFETTGDYPKYGNNDP
                     RVDDIAVQLVESFMKKLRKHQTYRNSEHTMSVLTITSNVVYGKKTGNTPDGRKAGEPF
                     APGANPMHGRDDHGALASLSSVAKLPYDCCKDGISNTFSIVPKSLGKEEATQEQNLVS
                     ILDGYALQHGHHLNINVFNRETLLDAMEHPEEYPQLTVRVSGYAVNFIKLTREQQLDV
                     ISRTFHESM"
     gene            5242..6003
                     /gene="pflA"
                     /locus_tag="PTC08_001850"
     CDS             5242..6003
                     /gene="pflA"
                     /locus_tag="PTC08_001850"
                     /EC_number="1.97.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate formate lyase-activating protein"
                     /protein_id="HDK5683354.1"
                     /translation="MIKGHIHSIESLGTVDGPGLRYIIFTQGCLLRCLYCHNPDTWKV
                     NEPSRTATADELVNEIVPYLPYFQASGGGVTISGGEPLLQMPFIEELFEKLHAQGIHT
                     CIDTSLGCANDTEAFKKHFDQVLTHTDLLMVDIKHIDNEKHQQLTGKPNTHILNYIQY
                     LADKGQPIWIRHVLVPGLTDAPEDLKALGTFINQLGNVEKFEILPYHQLGVHKWEALG
                     VPYALNDVEPPTDEDVERAYGYVNFTGVTPLTPVR"
     gene            6606..7265
                     /locus_tag="PTC08_001851"
     CDS             6606..7265
                     /locus_tag="PTC08_001851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HDK5683355.1"
                     /translation="MTRTLILGANGGVGQHLVKQMHAQGEDFTAAVRKKEQQQALASQ
                     GISATLIDLETATIDDLTDAFLPYDQVIFSVGSGGSTGADKTIIVDLDGAVKAIKASE
                     AANIEHFIMVSTYDSRREAFDASGDLKPYTIAKHYADDYLRHSRLTTTIVHPGALTND
                     QGTGKVNVAELFEQPDVRQIPREDVATVLYEVATNAEHRGKEFQVLTGNNEISEALSS
                     L"
BASE COUNT         2352 a         1265 c         1610 g         2091 t
ORIGIN      
        1 caccattgta ttgtatttgc tgaaggggtc aaaaaatagc aaatatgata tattggataa
       61 tgcggagtgg gacggatatc tcacttaatt gaatagataa gacgttccat tctgatatta
      121 tgtggtttca ttgacgggaa atgtgaaaca caaaggagga atggcaatga ttttcgaaaa
      181 gatggcacaa gctgattacg agcagttagt tttttgccac gacgaaacaa caggcttaaa
      241 agcaattatt tgtattcatg acacaacttt aggtccagca ttagggggtt gccgcttctg
      301 gaattacgaa agtgaggaag atgcgatagt cgacgtgatg cgcttagcta aagggatgac
      361 atataaaaat gcagctgccg gccttaattt aggtggcgca aaaactgttg ttattggtga
      421 tccgaaaaca gataaatctg aagcattctt tagagcactt ggtcgctata ttcatagttt
      481 agatggccgt tacattactg cagaagatgt aggaactaca gtagaagata tggatttcat
      541 tcgtttagaa acaccatatg tgacaggtgt cagtgagtct tacggttcaa gtggtaatcc
      601 aagtccgatg acggcattag gtgtttatta tgcgatgaaa cgtacagcga aagaagcatt
      661 tggctctgac agtttagacg ggaaaactgt tgctgtacaa ggtgtaggta atgtcgcata
      721 tcatatgtgt aaatacttac atgaagaagg cgcgaaactg attgtgactg atatcaatga
      781 ggaagccgtg caacgtgcag tgaatgactt taatgctgaa gcggtaggaa ttaatgatat
      841 ctatcaagtt gacgctgaca tttttgcgcc atgtgcactg ggtggtattt taaacgataa
      901 aacgattcca gagcttaaag tgaaaatgat ttgcggtagt gccaacaacc aattgctaga
      961 agaaaacaag catggtcaaa tgttagaaga acgcggcatt acttatgcac ctgactttgt
     1021 tgctaacagt ggtggtgtca tcaacgtagc tgacgagttg tacggtcaat ataaccgtga
     1081 acgtgctgaa aagaaagtga aaaacattta cgagcaaatg gataaaattt tcacgattgc
     1141 aaaagaagaa ggtattttac cattacaagc agcggaacat cttgcagaat cacgaattga
     1201 tacgatgatg cgtgtacata gtaaatattc agcaactcaa aaataatcat acaagcataa
     1261 agagagatag gggaacttta atgtgtcctt gtctcttctt tttttgcgtg aaaagtgaat
     1321 gatgtacgga ataaacgaca agttaaaata aaatgaagtt ggattgaatt atgtcacatt
     1381 aaattgcgaa tatttgaaaa aatggtgttg ctaaatgatc tttgttcggt tacgctatca
     1441 ctattgtggt acgaagcgca tttgaagggg acagaaaaag tggaaaagta gaatgaacgg
     1501 cgtacctcga aaatcatttg aagcgcattg gttcaaatgt aatttaacag tgaggtggta
     1561 aaggaaatgg aagtagcaga gcagagaatg acatttaaaa catttatgtt caaagtattg
     1621 aatggtttag ccatcgcaat tattgccggg cttattccga atgcagtgtt aggtggattg
     1681 tttaaatatt taagccaata cgctgatatt ttcgcaacga tgaatcaagt tgtcttaggg
     1741 gtacaatttg cgttaccgat tatggtcggt gtcctcatcg cgttacaatt caatttaaat
     1801 ccaatggcaa cagctttagt tggcgcagca tcatttgtcg gttcaggggc cgctaaagtg
     1861 acgcaggctg gttggcaatt ggttggtatt ggtgatttaa ttaatacaat gattacggca
     1921 tctattgcag tactgattgt gttatggtta ggcaatcgct taggaagttt gaacgtgatt
     1981 ttattgccta ttcttgtcgg cggaggtgca ggactgatcg gtgtagcgac attaccttat
     2041 gtcagcaaaa ttacgttagc tatcggtagt ttagtgaata catttacgac gttacagccc
     2101 gtgttgatgg gcgttttgat tgcagtctta ttttcattca ttattgtttc tccaatttca
     2161 acaataggcg ttggtttagc gattggtatt tcaggtttag cagcaggatc agcagcgatt
     2221 ggtgttgccg ttgcagctgt cgttttgttc atcggcacat tacgtgtgaa taaaattggt
     2281 gtcccgatcg cgattttatt aggtggtatg aaaatgatga ttcctaatat tattcgctat
     2341 cctattttac tcttaccaat cggcattaca gcagccgtaa caggtgcagc aggtgcattg
     2401 ttcggtattt caggtgtgaa agaaacagcg ggattcggta ttgttggttt agtcggccca
     2461 attaaagcat tagaattaat ggacggcaac ggtatgacca acttactgat tgtccttgcg
     2521 gtatttttcg tcattccatt agttgttggc tttattgtcg attacatttt gtggaaagtt
     2581 ttaaaattgt atgactctga aatttatcgt tttactgcaa cagaagataa taaataaaag
     2641 cattgaaagt gtcattttgt cgaaagagac aacgtggcgc ttttttattt cggggcctaa
     2701 acttttagaa aacgtcagtc atcacgcctt ggtcaggtca attaagttat ctaaaaatag
     2761 ttacgcaaca aaaaagttct ttttaaaatt cttataaatt gtgacaaatt attatacaaa
     2821 ttgacacgaa atgatgacat tttataaaac gctttcaatt ttaagtgatt atattcacaa
     2881 ttcttggtat actacttgtg aaatgatgaa caaacctaat tggaggtaaa gacatgatta
     2941 aagacactca aactacacat aatgcatggg aaggttttaa aactggacgt tggacacgcc
     3001 atgtggacgt tcgtgaattt atacaattaa actttacagg ttaccaaggc gatgacagtt
     3061 ttttagccgg tccaactgaa gcaacgacga aattatggga tcaagtgatg gtgttatcga
     3121 aagaagagcg tgaacgtggt ggtatttggg atatggatac aaaagtgcca tcaaccattt
     3181 tatctcatga tgcaggttac ttggatgaat cattagaaca aattgttggt gtacaaacag
     3241 acaaaccatt caaacgttct atgcaaccat ttggcggaat ccgtatggca aaagcagcat
     3301 gtgaagcata cggttatgaa ttagataaag aaacagagca catttttaca gagtatcgta
     3361 aaacacataa ccaaggtgta ttcgatgcct attcaaaaga aatgttagct tgtcgtaaag
     3421 cagggattat tacaggttta ccagatgctt atggccgtgg tcgtattatt ggagattatc
     3481 gtcgtgtcgc actgtacggt gttgatttct taatggcaga aaaacaaaaa gacttcaatg
     3541 acttatcatc aactatgact gaagatgtga ttcgtttacg cgaagaagtg tcagaacaat
     3601 atcgttcatt aaacgaatta aaacaactcg gtgaacgtta cggatttgat ttaagtcgcc
     3661 cagctgaaaa ctttaaagaa gcagtgcaat ggctctacct tgcttacctt gctgcgatta
     3721 aagaacaaaa cggagccgca atgagtctgg gacgtacatc tacattctta gacatttatg
     3781 cagaacgtga cttacaagca ggtacgatta ctgaaacgga agttcaagaa atcattgacc
     3841 acttcatcat gaaattacgt ttagtaaaat ttgcacgaac acctgattac aacgctttat
     3901 tctcaggcga tccaacatgg gtaacagaat caattggtgg tgtgggtatt gacggacgtc
     3961 caatggtaac gaaaaactca ttccgtttct tacactcact cgacaactta ggaccagcac
     4021 cagaaccaaa cttgacagta ttatggtcaa cacgtttacc tgaaaacttc aaacgctact
     4081 gtacgaaaat gagtattaaa acaagctcta ttcagtacga aaatgatgac ttaatgcgcg
     4141 aaagctacgg tgacgattac ggtattgcat gttgtgtatc tgcaatgcgt atcggtaaac
     4201 aaatgcaatt ctttggtgca cgtgccaact tagcgaagac attattgtat gcgatcaatg
     4261 gtggtaaaga tgaaaaatca ggtgctcaag ttgcgccaaa ctttgcacca attcaatctg
     4321 aaattttaga ttacgatgaa gtgtaccaac aatttgatga aatgatggaa tggctagcag
     4381 gtgtttacat caactcatta aatgtcattc actacatgca cgataagtat agctatgaac
     4441 gtatcgaaat ggcactccat gatacagatg tgcaccgtac gatggcaaca ggtattgcag
     4501 gtttatcagt tgcagcggac tcactttctg ccattaaata tggtcaagtt cgcacaattc
     4561 gcgatgaaaa tggactcgta gttgactttg aaacaacagg tgattatcca aaatatggta
     4621 acaacgatcc acgtgtagac gacatcgcag tgcagttagt tgaaagcttt atgaaaaaat
     4681 tacgtaaaca tcaaacgtac cgtaactctg aacatacgat gagtgtactc acaatcacat
     4741 caaatgtcgt ttacggtaag aaaacaggta acacaccaga tggacgtaaa gcaggcgaac
     4801 catttgcgcc aggtgcaaac ccaatgcatg gacgtgatga tcacggtgca ctggcatcat
     4861 tatcatcagt agcaaaatta ccttatgact gctgtaaaga cggtatttct aacacattta
     4921 gtatcgtacc aaaatcatta ggtaaagaag aagcaacaca agaacaaaac ttagtcagca
     4981 ttttagatgg ctatgcatta caacacggcc atcacttaaa catcaatgta tttaacagag
     5041 aaacattact agatgcaatg gaacacccag aagaatatcc acagctaaca gtacgtgtat
     5101 caggttatgc cgtaaacttt attaaattaa cacgcgagca acaactcgac gttatttctc
     5161 gtacattcca cgaatctatg taacgagtca gtaacacaac actaacagtc ttaaattgac
     5221 atgattaaat gggggagaac gatgattaaa ggacacattc attcaataga aagcttaggt
     5281 acagtcgatg gcccaggctt acgctacatt atctttacac aaggttgctt actgagatgt
     5341 ctttattgcc ataatccaga tacctggaaa gtcaatgagc cctctcgtac ggcaacagca
     5401 gatgaactcg tgaatgaaat tgttccgtat ctcccttact ttcaggcatc aggagggggc
     5461 gtcactatca gtggtggtga gcctctcttg caaatgccgt ttatcgaaga actgtttgaa
     5521 aagcttcacg cacaagggat tcatacgtgt atcgatactt cacttggctg tgcaaacgat
     5581 acggaagctt ttaagaaaca tttcgatcaa gtgttaacac atacagactt attgatggtg
     5641 gacattaagc atatcgataa tgaaaagcat caacaattaa ccggaaaacc taatactcat
     5701 atactcaact atattcaata tttagcagac aagggccaac cgatatggat tcgccacgtg
     5761 ctcgtaccag gtctcaccga cgcccccgaa gacttgaaag cacttggcac atttatcaac
     5821 caacttggca atgttgagaa atttgaaatc ttaccttatc accaactcgg tgtgcacaaa
     5881 tgggaggcct taggtgtacc gtatgcgttg aatgatgttg aacccccgac agatgaagat
     5941 gtagaacgtg catacggtta tgtgaatttt acaggcgtga cccctcttac gcctgtacgc
     6001 taaatattgg ttttgtaaga atgacatgat tctattttcg ctatgcataa acttttgact
     6061 ttaaatgata ttgaagagat ggctgggatg caatgtgatg ttgcctctca gcttctttat
     6121 tttgtgaaat ttgttgttat atttgacttt gaaaaggtgt tcatcaatcg attgctgaaa
     6181 cgcgctacgc tttcccagtg gacttgcctc aaataaagtg ggcttgattg aagtataaac
     6241 tggagggaag ctaattggat tttcggctat gtctaatcac tccggagtct tgcatgcttc
     6301 tagccatctg aagtagggtg acgtttgcta ttgacagtgg acaaatatga aaagttatat
     6361 ttaattcata tcatcaatac acatcaattt gcatattttt gtggaagagg tgatagcaag
     6421 agacgaaaaa tagaaaattg agaacgtcga tgatatggca tcgagttgtg caatgtcatt
     6481 taaataacga ttcaaagtag aatggggcgt taaagtgtgg taagtaatta ttttgtgttt
     6541 ttaagtttgt cataaaggga aatactagaa taatcgcgta tgaaagagaa agaggaggat
     6601 gttagatgac acgaacatta attttaggtg cgaacggtgg cgtaggacaa catcttgtga
     6661 agcaaatgca cgcacaaggt gaagatttta ctgcggctgt gagaaaaaaa gaacaacagc
     6721 aagcgttagc atcacaaggc atttctgcaa cattgattga tttagaaaca gcaacgattg
     6781 acgatttaac agacgccttt ctaccctatg atcaagtcat tttttcagta ggttctggcg
     6841 gtagtacagg tgcagacaaa acaattattg tagatttaga tggtgcggtt aaagcgatta
     6901 aagcgagtga agccgcgaac attgagcact tcattatggt gtctacgtat gactctcgtc
     6961 gtgaagcatt tgacgcaagt ggtgacttga aaccctatac gattgcgaaa cattacgccg
     7021 atgactattt aagacatagc cgattaacaa caactattgt gcatccgggt gcattgacaa
     7081 acgatcaagg aacaggaaaa gtgaacgttg ctgaattgtt tgaacaacca gatgtacgcc
     7141 aaattccacg tgaagatgtc gctacagtct tgtatgaagt ggctaccaat gcagaacatc
     7201 gtggtaaaga attccaagtg ttaacaggta acaacgagat ttcagaggct ttatcgtctc
     7261 tttaaagtaa cgatggacac atcaatcaag ataactagat acgtgagaag gcttaaaa
//
LOCUS       DANHOL010000118         7268 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.119, whole genome shotgun sequence.
ACCESSION   DANHOL010000118 DANHOL010000000
VERSION     DANHOL010000118.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 7268)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7268)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7268
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.119"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            <1..1286
                     /locus_tag="PTC08_001852"
     CDS             <1..1286
                     /locus_tag="PTC08_001852"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500497.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HDK5683356.1"
                     /translation="NFNRSEALQEQSNEYILGGVNSPSRSYKAVGGGAPVVMKSGKGA
                     YLYDVDGNEYIDYLQAYGPIITGHAHPHITEAIQEQAALGVLYGTPTELEIAFARKLR
                     AAIPSLEKMRFVNSGTEAVMTTIRVARAYTNRDKIIKFAGCYHGHSDLVLVAAGSGPS
                     QLGSPDSAGVPKSVAQEVITVPFNDIESFKEAMKHWGNQVAGVLVEPIVGNFGMVEPQ
                     PGFLEEVNRVTHEYGGLVIYDEVITAFRFHYGAAQDLLGVYPDLTAFGKIVGGGLPIG
                     GYGGRQDIMEQVAPLGPAYQAGTMAGNPLSMKAGIALLEVLEQPGVYEKLNQLGKKLE
                     AGLQAAIDKYQIKATINRVYGALTVYFTDEKVTHYEQADASDGEQFAKFFKLMLHQGI
                     NLAPSKYEAWFLTTEHTEADIEKTIAAADYAFSQL"
     gene            1380..2474
                     /locus_tag="PTC08_001853"
     CDS             1380..2474
                     /locus_tag="PTC08_001853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014667727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic acid exporter family protein"
                     /protein_id="HDK5683357.1"
                     /translation="MKLGARILKTGIAIILAVSIASLLPHSAGMVTVAGIAAVVAMQP
                     SVYRTFKTIVDQFQGNVIGALLAVAMVTIFGNNVIIMGATVILLIALLFKMKIAHVAT
                     LATVTALVIMGQHDGSFYISAFYRFSLVMIGVISSFIVNLTFLPPKFETKIYYNSLNI
                     STDIFKWFNLVLNDATEFNYVKQDLENLRQRIVKLEQLFEFYKEERVYTKKQAFAQTR
                     KKILFKEIVLSTRDAYDVLRRMNRYQNDLVHLNHALLLQIKLEIDELTQFHEQILISI
                     TKKAKFDVTLDQRFVPNPLKKEVITAFQEEVIVDPEPENFSYANIMHIISALEEYRYN
                     LEHLDRLRVSYFKYHNTDPDIDIIEEDFDL"
     gene            complement(2622..4199)
                     /locus_tag="PTC08_001854"
     CDS             complement(2622..4199)
                     /locus_tag="PTC08_001854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-binding glutamate synthase family protein"
                     /protein_id="HDK5683358.1"
                     /translation="MTFLTVLQLIINVLLVGIFVIACIALIAFLIFDKRQKQHSVLRN
                     YPVLARVRYFLEHIGPEMRQYLFLNDNEDQPFSRMEYQNIVIAGKYNSRGASFGTQKN
                     YDSGYFINNAMFPTQKHQLRVDNDEWISTFIYQIKSETLFNRSEHIRAKEIEPFYLAP
                     EHYVKIGEHVAHPFYVKRLVGQSGMSYGALGKNAITALSKGLGMANTWMNTGEGGLSD
                     YHLAGDVDIIFQIGPGLFGVRDEHGQFDPDHFMAVAQHTQVKAFEIKLAQGAKTRGGH
                     IEGKKVTEEIAKIRKLQPYETVDSPNRFDFINNAYDLLKWIDELREMSQKPVGFKMVL
                     GRKDDFKQLIDAMQTLQIYPDFITIDGGEGGTGATFQELQDGVGLPLFTALPTIDGLL
                     KAHQLRDKVKIFASGKLVTPDKIAIALALGADLVNVARAMMISVGCIMSRQCHKNICP
                     VGVATTDPKKEEALVVDEKQYRVTNYITSLHEGLFNIAAAVGVKSPTEIGPEHVTIKY
                     QNGEIESVHQYQLKLID"
     gene            complement(4724..6460)
                     /locus_tag="PTC08_001855"
     CDS             complement(4724..6460)
                     /locus_tag="PTC08_001855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDK5683359.1"
                     /translation="MIRRYLEFVKPYRWLIVGTIIVGILKFGIPLLIPLLIKYVIDDV
                     INNAALTVDDKLMRLGVSMLIAAFIFVVVRPPIEFFRQYLAQWTSNKILYDIRKKLYD
                     HLQALSSKFYANNKAGEVISRVINDVEQTKDFIMTGLMNIWLDCITIIIALSVMFFLD
                     VQLTLAAIVVLPFYILTVYFFFGRLRALTRERSQKLAETQGFLHERVNGMAVIKSFAI
                     EENEAKNFDQRNTNFLNKAFKHTRWNAYSFSAINTVTDIGPLIVIGYGAYLAITGSVT
                     VGTLAAFVSYLEQLYGPLRRLVSSFTTLTQSFASMDRVFQLFDEPYDIKNAPQAKAIP
                     IREGQIEIENVSFKYNPEERNVLNHLNLDIQHGETVAFVGMSGGGKSTLIHLIPRFYD
                     VTEGHIKIDGHDVKDFDTASLRRQIGMVQQDNILFSDTVKENILLGRPDASFEEVVEA
                     AKLANAHDFIMALPQGYDTEVGERGVKLSGGQKQRLSIARIFLNDPPILILDEATSAL
                     DLESEAIIQEALEKLSHDRTTIIVAHRLSTITHADKIVVIENGEIVEQGSHETLMQRE
                     GAYRRLFSIQNL"
BASE COUNT         2256 a         1487 c         1291 g         2234 t
ORIGIN      
        1 tgaattttaa tcgaagtgaa gcattacaag aacaatccaa tgaatatatt ttagggggtg
       61 tcaattcacc gtctcgttca tataaagctg tcggtggtgg cgcaccagtt gtgatgaagt
      121 ctggtaaagg tgcttattta tacgacgtcg atggcaatga atatatcgac tacttacaag
      181 catatggtcc tattattact ggacatgccc acccgcatat tactgaagcc atccaagaac
      241 aggctgccct tggtgtatta tacggtacac ctacagaatt agaaattgca tttgcacgaa
      301 aattacgagc agccattcct tcattagaaa aaatgcgctt tgtcaattca ggaacagaag
      361 ctgtgatgac tacgattcgc gttgcacgtg cttatacaaa tagagataaa atcatcaaat
      421 ttgctggctg ttatcacggc cactctgact tagtgcttgt cgctgcagga agtggtccat
      481 cacaacttgg ttctcctgat tcagcgggtg tgccgaaaag tgtagcccaa gaagtaatca
      541 ctgtgccatt taacgatatt gagtctttta aagaagcaat gaaacactgg ggcaatcaag
      601 tggctggcgt gctagttgaa cctattgtcg gtaactttgg catggtcgaa cctcaacctg
      661 gatttttaga agaagtgaac cgtgtgacac atgaatatgg tggcttagtt atttacgatg
      721 aggtcattac tgcattccgt tttcattatg gtgctgcaca agatttattg ggcgtttatc
      781 ctgatttaac tgctttcggt aaaattgtag gaggtggcct tccaatcggt ggttacggtg
      841 gtcgccaaga tattatggaa caagtcgcac cactcggacc cgcctatcaa gcagggacaa
      901 tggcaggtaa cccattatca atgaaagcag gtattgcgtt gttagaagta ttagaacaac
      961 caggtgtata tgaaaaatta aatcaactcg gtaaaaaatt agaagccggg ttacaagctg
     1021 ctattgataa atatcaaatc aaagcaacta tcaaccgtgt atatggtgcg ttaacggtat
     1081 actttacaga tgaaaaagtg acacattacg aacaagctga tgcgtctgat ggcgaacaat
     1141 ttgcgaaatt tttcaaactg atgttacatc aaggcatcaa cttagcacca tcaaaatatg
     1201 aagcatggtt tttaacaact gaacatacag aagcagatat tgaaaaaaca attgctgctg
     1261 cggattatgc atttagccaa ttgtaaactt cgctattgaa atttgcgatg taacagtgta
     1321 taacatgatt aaacctatgc acgactcaag ctttaattta atcaaaggag cgcgatgttt
     1381 tgaaactggg agctagaatt ttaaaaacag gtatcgccat tatacttgcg gtttcgattg
     1441 cctcactgtt acctcatagt gctgggatgg tgaccgtcgc aggcattgca gcggtcgttg
     1501 ccatgcagcc tagtgtctat cggacattta aaacgattgt cgatcaattc caaggtaatg
     1561 tcattggtgc ccttctcgct gtagctatgg tgaccatttt cggcaacaat gtcattatta
     1621 tgggtgcgac agtgattttg ttaatcgcat tactctttaa aatgaaaatc gcacatgttg
     1681 caacgttagc gacagtgact gcactggtta ttatgggaca acatgacggc tctttttaca
     1741 tctcagcctt ttatcgattt tctcttgtga tgattggggt catcagctca ttcatcgtta
     1801 atctcacatt tttaccacca aagtttgaga cgaagattta ttacaactca ttaaacattt
     1861 cgaccgatat ttttaagtgg tttaatttag tgttaaatga tgcgacagaa tttaattatg
     1921 tgaagcaaga tttagaaaat ttacgtcaac gtattgtcaa acttgagcag ttatttgaat
     1981 tttataaaga agaacgtgtc tatacaaaga aacaagcctt cgcacaaaca cgtaagaaaa
     2041 tcttatttaa agaaatcgtc ttgtcgacac gtgatgcgta tgacgtgctc agacgaatga
     2101 atcgatatca aaatgatttg gtgcatttaa atcatgcatt attattacaa atcaaattag
     2161 aaattgatga gctgacacaa tttcacgaac aaattttaat tagtataacg aaaaaagcaa
     2221 agttcgacgt gacactcgat caacgttttg tcccgaaccc attgaaaaaa gaagtcatca
     2281 cagcctttca agaagaggtc atagtagacc cagaacctga aaacttttct tatgccaaca
     2341 ttatgcatat catttcagct ttagaagaat atcgctacaa tttagaacac ttagatcgtt
     2401 tacgtgtcag ttattttaaa taccataaca cagaccccga tatcgatatc attgaagaag
     2461 attttgattt ataacaaata aaagctcgag caaaatgatt taacgtcatc ttgttcgagc
     2521 tttttctgta ttgataaggc tagtagatca actttttctg cctctatcac atttaatgag
     2581 ggtgcgcatc aaaaattttt tgtaccaccc catttcccca tttaatcaat caactttaat
     2641 tgatattgat gaaccgattc aatttcacca ttctgatatt taatcgtcac atgttcagga
     2701 ccgatttcag ttggactttt cacaccaacc gctgccgcaa tattaaacaa cccttcatgc
     2761 aagctcgtaa tatagttcgt tacacgatat tgtttttcat cgacgacaag cgcttcttct
     2821 tttttaggat ccgtcgttgc aacaccgact ggacaaatat ttttatggca ttgacgactc
     2881 atgatacaac ctacactaat catcatcgct ctggctacat tcacgaggtc agcccctaat
     2941 gctaatgcaa tggcaatttt atcaggcgtg accagttttc cagatgcaaa aattttcact
     3001 ttgtctctta actgatgcgc tttgagtaaa ccatcaatgg taggtaacgc tgtaaataac
     3061 ggtaaaccga cgccatcttg caattcctgg aacgttgcac ctgtcccacc ttcaccacca
     3121 tcaatcgtaa taaagtctgg ataaatctgt aacgtttgca tagcgtcaat caattgttta
     3181 aagtcgtctt ttctaccaag taccatttta aagcccactg gtttttgact catttctcgc
     3241 aactcatcaa tccatttcaa caaatcatac gcgttattaa taaagtcaaa acggttcggc
     3301 gagtcgacag tttcataagg ttgaagctta cgaattttgg caatttcttc tgtcactttt
     3361 ttaccttcaa tatgaccgcc acgtgtttta gcgccttgtg ccaacttgat ttcaaacgct
     3421 ttaacttgtg tatgttgtgc aactgccatg aaatgatcag ggtcgaattg tccgtgctcg
     3481 tccctaacgc caaataaacc aggcccgatt tggaaaataa tatcaacatc accggcaaga
     3541 tgataatcag ataagccgcc ttcaccggta ttcatccatg tgttcgccat gcctaatcct
     3601 ttcgaaagtg ccgtaatcgc atttttaccc agagcaccgt aactcatgcc cgactgtcca
     3661 actaaacgtt taacataaaa tggatgcgcg acatgctcac cgattttgac ataatgttca
     3721 ggcgccaaat aaaaaggttc aatttctttc gcacgaatat gctctgaacg attaaacaat
     3781 gtttcgcttt taatttgata aatgaacgtt gaaatccatt catcattgtc gacccttaac
     3841 tgatgctttt gcgttggaaa cattgcatta ttaataaaat aaccgctgtc gtaatttttc
     3901 tgcgtcccaa aactcgcccc tcttgagttg tacttgcccg caataacaat attttgatat
     3961 tccattcttg aaaaaggttg gtcttcattg tcatttaaaa ataaatattg gcgcatttca
     4021 ggtccaatat gttctaaaaa gtatctcaca cgtgcgagca caggataatt acgtaataca
     4081 ctgtgctgct tttgtcgttt atcaaaaatt aaaaacgcaa tcaatgcgat acatgcaatg
     4141 acgaatatac ctactaataa aacattgata attaattgta gtacagttaa aaaagtcatt
     4201 gtacccccca ctcccttttt ctttcattat acatgaaata tagggccata ttgacttaag
     4261 tgaccgattt aaattggaaa taacttgatt aatcacctct aggcacatgc atcattgaca
     4321 cattccattt atagattttt ccactaacaa tgaattcaaa aatgatttat tcttatcaca
     4381 tttttcactc agaacatcct atttattttt aaatttaaat tttcaccttg cttttaggcg
     4441 tcacgttata cctcacaaac atcaaaagga gctaggacat taaatttcct tagctccttt
     4501 actatatgtt gtgtatgcca agggatggga cataaaaatt taagcctcaa acccttcata
     4561 gatcgatgat tcattaataa ctttaaaaaa gtcagataat gagggtgaaa aggataaaaa
     4621 attaatgcta ttgttttggg gttcatcatc ttgcatcaat agcatcaaaa tttttctgtg
     4681 ttccaatccc tttcatatca ctatcatacg attgcaattg caattataag ttttgaattg
     4741 agaataatcg acggtatgcg ccttctcgtt gcattaacgt ctcatgggaa ccttgctcca
     4801 caatttcacc attttcaatg acgacaattt tatctgcatg tgtaatcgtt gaaagtcgat
     4861 gtgctacaat aatagtagtc cggtcatgac tcagcttttc taacgcctct tgaataatcg
     4921 cttcactttc taaatctaac gcacttgttg cttcatctaa aatcaatata ggtggatcat
     4981 ttaagaaaat acgagcaatc gataagcgtt gtttttgccc accagaaagt tttacgccac
     5041 gttcgccgac ttccgtatca taaccttgag gcaatgccat aataaagtcg tgggcatttg
     5101 cgagtttcgc cgcttcaaca acttcctcaa atgacgcatc tggacgaccg agcaaaatat
     5161 tttctttcac cgtatcagaa aataaaatgt tgtcttgctg caccataccg atttgacgtc
     5221 tcaaacttgc cgtatcgaaa tctttaacgt catggccatc aattttaata tggccttccg
     5281 tcacatcgta aaagcgagga ataagatgaa ttaaggttga ctttccgcct ccactcatgc
     5341 cgacaaatgc gactgtttcg ccatgttgga tatccaaatt caaatggttc aatacatttc
     5401 gctcttctgg attgtactta aatgagacat tttcgatttc aatttgccct tcacgaatcg
     5461 gtatcgcttt cgcttgtggt gcatttttaa tatcataagg ctcgtcaaac aattgaaaaa
     5521 cacgatccat tgatgcaaaa ctttgcgtta atgttgtaaa agaagacaca agtcgacgca
     5581 atggcccgta tagttgttca aggtagctga caaatgccgc aagtgtcccc actgtcacag
     5641 atcccgtaat ggctaaataa gcaccgtaac ctataacaat taatggacca atatcagtca
     5701 cagtgttgat agccgaaaat gaataagcat tccaacgtgt atgtttaaag gccttgttta
     5761 aaaagttcgt gttgcgttga tcgaaatttt tagcttcatt ttcttcaatc gcaaaacttt
     5821 taatgaccgc catcccattg acacgttcat gaagaaaacc ttgtgtttca gcaagttttt
     5881 gtgaacgttc acgagtcaga gcccttaaac ggccgaaaaa gaaatatacc gttaaaatgt
     5941 aaaaaggtaa gacaacgatt gccgctaacg tcaattgtac gtctaagaaa aacatcaccg
     6001 acaacgcaat aataatcgta atacagtcaa gccaaatatt catgagcccc gtcatgatga
     6061 aatctttcgt ctgttcgaca tcattaataa cacgtgaaat gacttcacct gctttgttgt
     6121 tcgcataaaa ctttgaactt aacgcttgta aatgatcata caattttttt cgaatatcat
     6181 ataaaatttt gttacttgtc cattgtgcta aatattgtct aaaaaactca atcggcggac
     6241 gtactactac aaaaataaac gccgcgataa gcatagacac acctaaacgc attaacttat
     6301 catctactgt tagagccgca ttatttatga catcatcaat gacatatttg attaataatg
     6361 gaatcagtaa tggaatacca aacttcagta ttccgactat aatcgtacca acaatcagcc
     6421 atcgatacgg ctttacaaac tctaaatatc ttcttatcaa aaaaacgccc cccggtatta
     6481 tcctacgtca acattgaccc catttgtatc atgtgttaaa taaatttcgc gcgtctcttt
     6541 gaatgacgaa ttgaacggga ctgggacatg atgttttccc agtctctgct tctatttatg
     6601 gattgatatc cattaatggt gattaaaccg ttgaaaaata agggtgtatg taaaaaatga
     6661 tgcgatcgtt ttcttgattt catcaacttg caagcagttg cgcagtattg aaatatgatt
     6721 gcccagaagg ctgagactcc tgagggataa gttaaacgct aaacaacgtc atttaacttt
     6781 aaaagtggct accgtttaac gcagtagctg tctgacttct caatgcgcat gcttttgaga
     6841 agtcttgtca gccttgcggg ggcagtacga cgaaatcttt gttacacatg agattcctgt
     6901 actgctccca aaatccaatt cggcttcaaa caagtgttga cttcaatcaa gccgaattga
     6961 gttggagggc cagcccctag gaaagggaag ccatgatggc aatcaaaaac cgaaaatcgt
     7021 agggagggca agtttaacaa aatattgcat caatcgcatc aaaaattttt atgtcccgcc
     7081 cccgtattac attgtcatcg ccaatcggtg ttgttattca attacaaacg atatgatatt
     7141 ttaaaagttt ttcacctttt gaaatcgttg acgccacact ttaataaaat caggtgcaaa
     7201 tggtcccttt ttctgctcaa tccattgttg taaaatatca acattgcgtc ttaaaatcat
     7261 atcaatat
//
LOCUS       DANHOL010000119         7066 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.120, whole genome shotgun sequence.
ACCESSION   DANHOL010000119 DANHOL010000000
VERSION     DANHOL010000119.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 7066)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7066)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7066
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.120"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            131..1231
                     /gene="qoxA"
                     /locus_tag="PTC08_001856"
     CDS             131..1231
                     /gene="qoxA"
                     /locus_tag="PTC08_001856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome aa3 quinol oxidase subunit II"
                     /protein_id="HDK5683360.1"
                     /translation="MSKLKSLLLAFGTLFLLAGCSDVEVLNAKGPMASDQRFLIIYSI
                     IFMVAIVVVVLILFAIFTYKYRYNNTRESGKVHHNALLETVWFLIPVIILIALMIPTV
                     KALYQYEEPPKSEDDPIVIYAVSGGYKWFFAYPDEKIETVNHLKIPTDRPVTFKLQAM
                     DTMTSFWVPQLGGQKYAMTAMTMEWTYEAHEEGTYRGRNSNFNGEGFSRHTFNVEAVS
                     QKEYDAWVKEAQSKKQLDQDTFDKQLLPITENKELTFSGTHMAFVDPAADPEYIFYAY
                     KRFNYAPKDHNFYDDKKGVLSEPNKPARKSQITNANYERHGMKAAILKNDQPFDNEFK
                     KEQKHTMDEMESMHEGAKDAEAHKDHKSGGGH"
     gene            1234..3222
                     /gene="qoxB"
                     /locus_tag="PTC08_001857"
     CDS             1234..3222
                     /gene="qoxB"
                     /locus_tag="PTC08_001857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001010769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome aa3 quinol oxidase subunit I"
                     /protein_id="HDK5683361.1"
                     /translation="MDFPWNELIVKGNWMITLAQISAPFLVIGVIAAITYFKLWGYLY
                     KEWFMSVDHKKIGLMYLICAVLMFVRGGIDAILLRIQLTVPDNPFLESNHYNEIFSTH
                     GVIMIIFMAMPLVIGLMNIIIPLQIGARDVAFPVLNNISFWLFVAGMLLFNLSFIVGG
                     SPAAGWTNYAPLAGEFSPGPGVNYYLIAIQISGIGTLATGVNFFVTIIRLKSPSMTFM
                     QMPMFVVTTFITMLIIILAFPVLTVALALMTADRVFDTAFFTVANGGMPMLWANFFWV
                     WGHPEVYILVLPAFGIYSEIIPTFARKRLFGHQSMVWATAGIAFLSFLVWVHHFYTMG
                     NGALVNSFFSITTMLIAVPTGVKIFNWLFTLHKGRISFESPMLFSLAFIPNFTIGGVT
                     GVMLAMASADFQYHNTYFLVAHFHYTIVAGVVFACFAAMIFWYPKAMGYKLFEKPNKW
                     FFWIFMVGFNVTFLPQFILGLDGMPRRLYTYMPEDGWFVLNVISSIGAAMMSIAFLIF
                     VGNIVYSHLKAPREATGDNWNGLGRGLEWSTASAIPPKYNFAITPDWDDIDTFVEMKK
                     QGRHYLDNHNYSDIHMPNDTHIGFWMGIFFFIGGFFLVFETLLPAILALAGIFGLMIW
                     RSFQQDHGYHIPASEVAETEARLRKARQKEREAMNHES"
     gene            3212..3820
                     /gene="qoxC"
                     /locus_tag="PTC08_001858"
     CDS             3212..3820
                     /gene="qoxC"
                     /locus_tag="PTC08_001858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome aa3 quinol oxidase subunit III"
                     /protein_id="HDK5683362.1"
                     /translation="MSHKNVNTIDARTHEGDLNKLGFWIFLTAEFALFGTLFATLLTL
                     QHGGSYGGMLTTDLFELPLVLIMTFLLLASSYTCGIAIYYMRKENKQLLLIWMIITII
                     LGIGFVGFEIFEFSHYVHEGATPQLASYWSSFFILLGTHGAHVTVGIFWIICLLIQVA
                     TRGLTKYNAPKLFIVSLYWHFLDVVWIFIFTAVYMIGMVYSG"
     gene            3817..4107
                     /gene="qoxD"
                     /locus_tag="PTC08_001859"
     CDS             3817..4107
                     /gene="qoxD"
                     /locus_tag="PTC08_001859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002474577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome aa3 quinol oxidase subunit IV"
                     /protein_id="HDK5683363.1"
                     /translation="MNTIVKHTIGFIASIILTLLAVFVTLYTSLSFQAKVTIIFGFAF
                     IQAFLQLLMFMHLTEGKDGRVQLAKVIFAIIITLITVIGTYWVMQGGHGSHI"
     gene            4288..5193
                     /gene="rihC"
                     /locus_tag="PTC08_001860"
     CDS             4288..5193
                     /gene="rihC"
                     /locus_tag="PTC08_001860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleoside hydrolase RihC"
                     /protein_id="HDK5683364.1"
                     /translation="MPIPIIIDTDPGIDDAAAISLALHHPQLDVQLISTVHGNVPLQR
                     TTRNAQQLIEHFHAHVPVASGAASPLVQKAVHAPHVHGESGMAGYTFDEPTTSLMSKN
                     SVEAMKDLLLQSTTPITLVPIGPLTNIALLLKMYPEVHTYIHQIVLMGGSVGNGNVSV
                     AAEFNVYADPEAAHIVFNSNLPIVMAGLDIARASNLPHALLPKIKEMNHTGHMLYHLF
                     QHYGGESFLDGLNVYDAYTIMYLCYPELFTVRPAKVDVELSGSHARGATFVDFNVTDS
                     STHVLMDIQAEAFQTAFLDMLKYCP"
     gene            complement(5926..>7066)
                     /locus_tag="PTC08_001861"
     CDS             complement(5926..>7066)
                     /locus_tag="PTC08_001861"
                     /inference="COORDINATES: protein motif:HMM:NF012789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="UvrD-helicase domain-containing protein"
                     /protein_id="HDK5683365.1"
                     /translation="IARIYRDKASEQQFYRKSSVEFFQWISKQLINATCRFYFKNVMD
                     QTGRIVISKEEIAMIFNGYRVNHDLTTAIQKLKQNLVALYQADYKRLFVQNYTELENQ
                     NSYIGEKSEIVAQSKAKTARTLKRVKRMIQSYRFINIEKLYQRLCKDFQVNVQLKKEA
                     MAYEDFWILVWLYTKIVRGSHSLFKHIIVDEVQDYSVFQLDILRQCYDEANFTFLGDL
                     NQNFLPKSFIEFEDWDMTIKQLTTSYRSTKAISRYLDELKHTDTKVVSVEGDPVIKIS
                     SAKVQHVKDIIMEAAHDVAIVVPSHIEGEQLYSALRHDIKLRLIEEDDSFVTAGHIII
                     PYDLVKGFEYHTVISWRNNEYDSTNIQYIIASRAISQLYLLEVNG"
BASE COUNT         2109 a         1384 c         1296 g         2277 t
ORIGIN      
        1 ccattcctag agtgacaagg ccttctacaa tttgatttaa ttgttttttc aaaaagccac
       61 ttgtaaatat cccatattat tttaaaatta atgtaagccc tacaattgta gtattaggag
      121 gtcaaaaaaa gtgtcaaaat taaagtcttt gcttcttgca tttggaacat tgtttttgct
      181 tgcgggctgt tctgatgtag aagttttaaa cgcaaaaggg ccaatggcca gcgaccaaag
      241 atttttgatt atctattcaa ttatctttat ggttgccatt gttgtagttg tacttattct
      301 tttcgcgata ttcacttata aataccgcta taataataca cgcgaatctg gtaaagtaca
      361 ccacaacgca cttctcgaaa cagtatggtt ccttatccct gtaattatct taattgcatt
      421 gatgattcca actgtaaaag ccttatatca atatgaggaa ccaccaaagt ctgaagatga
      481 ccctatcgtc atttatgcag taagtggtgg atacaaatgg ttcttcgctt atccggatga
      541 aaaaattgag acggttaacc atcttaaaat tccaactgat cgtccagtga cattcaaact
      601 tcaagcgatg gatacaatga caagtttctg ggttccacaa ctcggcggtc aaaaatacgc
      661 aatgactgcg atgactatgg agtggactta tgaagcacat gaagaaggta catatcgtgg
      721 ccgtaactca aacttcaacg gtgaaggttt ctcacgtcac acatttaacg ttgaagctgt
      781 gagccaaaaa gagtatgatg cttgggttaa agaagcacaa tctaagaaac aactcgacca
      841 agatacattc gataaacaac ttcttccaat cactgaaaat aaggaattaa ctttcagtgg
      901 tacacatatg gcatttgttg atccagcagc tgatccagaa tatattttct atgcttataa
      961 acgatttaat tatgcaccaa aagatcacaa cttctatgat gataaaaaag gtgtcttaag
     1021 cgaaccgaat aagccagcac gtaaatctca aattacgaat gccaactatg aacgccatgg
     1081 tatgaaagct gcaattctta aaaatgatca accatttgat aacgaattca aaaaagagca
     1141 aaaacatact atggatgaaa tggaatcaat gcatgaaggt gccaaagacg ctgaggcaca
     1201 caaagatcat aaaagtggag gtggacatta atgatggact ttccatggaa tgagcttatt
     1261 gtaaaaggta actggatgat tacattggct caaatcagtg cacctttctt agttatcggt
     1321 gtcattgcag ccattactta ctttaagctc tggggatatt tatataagga atggttcatg
     1381 tcagtcgacc acaaaaaaat cggtttgatg tacttaatct gtgcggtatt aatgttcgta
     1441 cgtggtggta ttgatgcaat tctattacgt attcaattaa cagtacccga caacccattc
     1501 ttagagtcaa atcactataa cgaaattttc tcaacgcacg gtgtcatcat gattattttc
     1561 atggcaatgc cacttgtaat cggtctaatg aacatcatta tcccattaca aatcggtgct
     1621 cgtgacgttg ctttcccagt attgaacaac attagctttt ggttgttcgt agcgggtatg
     1681 cttttattta acctttcatt catcgtgggt ggttctccag ctgcaggttg gacaaactat
     1741 gcgccacttg ccggtgaatt cagtcctgga cctggtgtca actattattt aattgccatt
     1801 cagatttcag gtattggtac tttagcaacg ggtgtgaact tcttcgtaac aatcatccgt
     1861 ctaaaatcac caagtatgac atttatgcaa atgccaatgt tcgttgtgac aacatttatc
     1921 acaatgttaa tcatcatctt ggcattccca gtgttaactg tagcacttgc attaatgact
     1981 gctgacagag tgtttgatac tgcattcttc acagtagcta atggcggtat gccgatgtta
     2041 tgggcaaact tcttctgggt atgggggcac cctgaagtat acatccttgt ccttccagca
     2101 ttcggtattt attcagaaat tattccaaca tttgcacgta aacgtttatt tggacaccaa
     2161 agtatggtgt gggcaacagc tggtatcgca ttcttgagtt tcttagtttg ggttcaccat
     2221 ttctatacaa tgggtaatgg tgcattagtt aactcattct tctctatcac aacaatgttg
     2281 atcgctgtgc caacaggtgt aaaaatcttt aactggttat ttacactaca caaaggacgt
     2341 atttcatttg aatcgccaat gttattctca ttagcgttta ttcctaactt tacaattggt
     2401 ggggttaccg gggttatgct tgcgatggca tccgcagact tccaatacca caacacatat
     2461 ttcttagtgg cacacttcca ctatacaatt gttgccggtg ttgtatttgc atgtttcgca
     2521 gctatgattt tctggtatcc aaaagctatg ggttacaaat tattcgaaaa accaaacaaa
     2581 tggttcttct ggatcttcat ggttggtttc aacgtgacat tcttaccaca attcatttta
     2641 ggtcttgatg gcatgccacg tcgtttatac acttacatgc cagaagatgg ttggttcgta
     2701 ttaaacgtga tttcttcaat cggtgctgca atgatgtcga ttgcgttctt aatctttgta
     2761 ggtaacattg tatacagtca cctcaaagca ccacgtgaag caactggtga taactggaac
     2821 ggtttaggtc gtggtttaga gtggtctact gcatctgcaa ttccacctaa atacaacttt
     2881 gcaattacac ctgattggga tgatattgat acatttgttg aaatgaaaaa acaaggtaga
     2941 cactatcttg acaatcacaa ttacagcgac attcacatgc cgaacgatac acacatcggt
     3001 ttctggatgg gtatcttttt cttcatcggt ggtttcttct tagtattcga aacattatta
     3061 cctgcgattc ttgcattagc tggtatcttc ggtttaatga tttggagaag tttccaacaa
     3121 gatcatggtt accacatccc tgcaagtgaa gtagctgaaa ctgaagcgcg cttgagaaaa
     3181 gctcgccaaa aagaaaggga ggctatgaat catgagtcat aaaaatgtga atactattga
     3241 tgctcgtaca catgaaggcg atttaaataa actcggtttc tggatcttcc ttacagctga
     3301 attcgcactt tttggtacac ttttcgcaac attgttaacg ctccaacatg gtggtagcta
     3361 cggtggtatg ttaacaactg atttgtttga attaccactt gttttaatca tgacattcct
     3421 acttttagca agttcttaca cttgtggtat tgcaatatac tacatgcgta aagagaacaa
     3481 gcaattgtta ttaatttgga tgattattac aattatttta ggtattggat tcgttggctt
     3541 tgagattttc gaatttagtc actatgtgca tgaaggtgct acaccacaac ttgcatctta
     3601 ttggtcaagt ttcttcatcc ttttaggaac gcacggtgcc cacgtgacag ttggtatctt
     3661 ctggattatt tgtttattaa tccaagttgc cactcgcgga cttacaaaat ataatgcacc
     3721 aaaattattc attgtaagtt tatactggca cttcttagac gttgtgtgga tcttcatctt
     3781 cactgcagtg tatatgatag ggatggtgta tagcggatga atacaattgt aaaacataca
     3841 ataggcttta tcgcctcaat cattttaact ttactcgctg ttttcgtgac tctatataca
     3901 tcattgtcat tccaagcaaa agtaacaatt attttcggtt ttgcattcat ccaagcgttt
     3961 ttacagctct taatgttcat gcacttaact gaaggtaaag atggtcgtgt tcaacttgca
     4021 aaagttatct tcgcgattat cattacattg atcacagtta tcggaacata ctgggtaatg
     4081 caaggcggac atggttcaca tatttaatcc atgacgcaaa aagcactaac acatcgcgtg
     4141 ttagtgcttt tttataccta ttttagtatg acacttctat tgcactcccc ctttgtggta
     4201 ttgtcacatc ttttttccta aaacaatttt aacaagttga agcgaacgta cacagccatt
     4261 actatagata aaaaaggagg ttttactatg cccattccaa tcattattga tacagaccct
     4321 ggcattgatg atgcagctgc catcagtttg gcacttcatc atccacaact tgacgtacaa
     4381 ctgatatcaa ccgtacatgg taacgtgcca ctccagcgca caacgagaaa tgcccaacaa
     4441 ttgattgaac actttcatgc ccatgtacct gttgcatcag gtgcagcatc accactcgtt
     4501 caaaaggccg tccacgcccc tcatgttcat ggtgaaagcg gtatggcggg ttacacattt
     4561 gacgaaccga ctacctctct catgtcaaag aatagtgtag aagcgatgaa agacctactt
     4621 ctccaatcga cgacaccgat aacattagtg ccaattggac cactcacaaa catcgcatta
     4681 cttttaaaaa tgtatccaga agttcataca tatatacatc agatcgtgct tatgggtggt
     4741 agtgtcggta atggcaatgt aagtgttgcg gcagaattta acgtctatgc cgaccctgaa
     4801 gctgcacata ttgtcttcaa ctcaaactta cctatcgtga tggctggttt ggatattgcg
     4861 cgtgcatcta acctacctca tgcattattg ccaaagatta aggaaatgaa tcacaccggt
     4921 cacatgttgt atcatctctt ccaacattat ggtggtgaat catttttaga tgggttaaac
     4981 gtttatgacg cttatacaat aatgtattta tgctatcctg agttatttac agttcgccca
     5041 gctaaagtag acgtggagtt aagtggtagc catgcacgtg gcgcaacatt tgttgacttt
     5101 aatgtgacag acagttcaac acacgtgctc atggatattc aagcagaagc ctttcaaact
     5161 gctttccttg atatgttgaa atattgccct taaaatcgtt aagcaaaaag gagtttactt
     5221 ttcaatgtcc tctgctaatt ctatatgtac tgccttgcta cgtatggaca cacccccatt
     5281 ttcacatgta cagacacacc catcaacagt tctaccttat ctcaaaaaaa cagagcgagg
     5341 tcattcaatt taccttgctc tgtcttctta tagttaaaat aaattaaaaa gagatgctac
     5401 tttttataag gttacttgag tcgatgatat gacgttgctc tctttccttg cctttgttca
     5461 tgcaaaatta ccgaacgaac gaaactccct aggtaaatga gaaaaataat aggataactt
     5521 tttgatgttt gcatgtagcc aatgtttaac gcagaatcag aataaaaata gattgaaatg
     5581 agattaaatt ttgacgttaa ctaagtcgat agaatgggaa tgccctcttt ccttgcgctt
     5641 gttcatgcaa gattgccggg cggacgagac tcccgaggga tcagctgaac cggaaaatcc
     5701 accaacgctt caacaaatgt aacagtataa tcaaagcgtt ggttagttgt aggttcagcc
     5761 cctgggaaac gcgagtccaa gacggcaatc gtatgcaagc gacatgttct taaaggaaag
     5821 acggcaatcg catacaagag acatgttctt aaaggaaaga gcgtaagttc agcaaaatat
     5881 gtgattgaag tttctaaaat atcaatccac tgctacattc tttaatcacc cattcacttc
     5941 taataaatat aattgtgaga tagcacgtga cgcgataata tattgtatat tggtactgtc
     6001 atattcgtta ttccgccatg aaatcacagt atggtattca aatcctttaa caagatcata
     6061 aggaatgatt atatgtcctg ctgttacaaa cgaatcatcc tcttcaatta atcttaattt
     6121 tatgtcatgt cgaagcgcac tgtatagttg ctccccttct atatgagagg gtacgacgat
     6181 cgctacgtca tgtgctgcct ccattataat gtcttttaca tgttgtactt tagcacttga
     6241 aattttgatt acagggtcac cttcaacact tacgactttt gtatcagtat gcttaagttc
     6301 gtctaagtat cgactgattg ccttcgtaga gcgatatgaa gtcgtcaact gttttattgt
     6361 catatcccag tcttcaaatt caatgaaaga ttttggtaag aaattttgat tcaaatctcc
     6421 taaaaatgta aaattggcct catcataaca ttgacgtaaa atatctaatt gaaatacgct
     6481 ataatcttgt acttcatcaa ctataatatg tttgaaaaga gagtgagatc ctcgcactat
     6541 ttttgtataa agccaaacaa gtatccaaaa gtcttcatat gccatcgctt ctttttttaa
     6601 ttggacgttc acttgaaaat ctttacataa acgttgatat aatttttcta tgttgataaa
     6661 gcggtacgat tgaatcatac gcttcacacg ttttaatgtt cgtgctgtct tagctttgga
     6721 ttgcgctaca atttcggact tttcaccgat gtaactattt tgattttcta attctgtata
     6781 gttttgaaca aataaacgtt tgtaatcagc ttggtacaat gccactaaat tctgttttaa
     6841 tttttgaatt gcagtcgtta aatcatgatt cacccgatac ccgttaaata tcatcgcaat
     6901 ttcttcttta gatatcacta tacgccctgt ttgatccatt acatttttaa aataaaatcg
     6961 acatgtagca tttattaatt gctttgaaat ccattgaaaa aattctacac tcgacttgcg
     7021 ataaaattgt tgttctgacg ctttatcacg atatattcgt gcgatc
//
LOCUS       DANHOL010000120         6783 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.121, whole genome shotgun sequence.
ACCESSION   DANHOL010000120 DANHOL010000000
VERSION     DANHOL010000120.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 6783)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6783)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6783
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.121"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            250..684
                     /locus_tag="PTC08_001862"
     CDS             250..684
                     /locus_tag="PTC08_001862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp20/alpha crystallin family protein"
                     /protein_id="HDK5683366.1"
                     /translation="MAFDMRPFNHSFFNMEPSDFFKDFGRHMLDEAFATPHIRTDIKE
                     LDDAYVIEAELPGMDKENIQLKFENNVLTIAAQNTLKNHKEDEEGHVIRQERHFSRMQ
                     RQFTFNNVDESNTKASYQNGMLNVTLNKRTPGRSSNSDIPID"
     gene            1059..1367
                     /gene="spn"
                     /locus_tag="PTC08_001863"
     CDS             1059..1367
                     /gene="spn"
                     /locus_tag="PTC08_001863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPIN family peroxidase inhibitor"
                     /protein_id="HDK5683367.1"
                     /translation="MNKTLIAGITVAALSTGIFATATGHEAHAQVTAQNGIVLHDDSK
                     LLAHELEYVDVLINPNTDPQTKAQLQDYFAKQGLNSVSDIVQKAKQDGLDTSKYNHLI
                     "
     gene            1630..3057
                     /locus_tag="PTC08_001864"
     CDS             1630..3057
                     /locus_tag="PTC08_001864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HDK5683368.1"
                     /translation="MDRDIKSTRSEWRHIIYNEVKNLLNKEMKDLPVALKPTDSMIAK
                     YQRMKIPKEGKGIEAVMDLLHTEVLNYNYRSNHPRTFSFVPGPASQLSWLTDFFTSAH
                     NIHASNFANAPLPIAIEHRLIRYLSEEIGFDSALSGGVFVSGGSMATLTAITAGRDAM
                     IPLSQMSEATVYLTAQAHFSVAKAFHIAGFAQTQLRYIPTDDFYTMDVNALEQQIELD
                     ITNGYRPIMIVATAGTTNTGAIDNLTHITRIARQHQMWVHADGAFGLSHIFTEEGKKL
                     LKDIDKVDSVTWDAHKLLFQTYSCAMVIVKNKNHLLSTYGVTAEYLDDITSTNEHIDP
                     EKLGIELTRPPRGLKLWVTLQVLGENEIKRRIEHGQEMARYVEQQVQQMKNWKIVTTS
                     QLSIINIRYEDPTKTPEENDQVMQFAASRIIQSGYAATYTTELSHRRVIRFCTIHPET
                     TRADIDGTLQRLNNYVQEASSQPQT"
     gene            complement(3142..3558)
                     /locus_tag="PTC08_001865"
     CDS             complement(3142..3558)
                     /locus_tag="PTC08_001865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HDK5683369.1"
                     /translation="MDDIDLKILKLLKTNARMKVKTISSIVMLSEPSVKNRISKMIES
                     KVIHGFNVDVNYEKLGYMIGFFMKVTEIKIAISEFEKRLQQFSDFREYYAVTGTEKYI
                     IHGYTKDIASLNALILKMERIAEFNTSIVLHQVKKD"
     gene            complement(3820..4512)
                     /locus_tag="PTC08_001866"
     CDS             complement(3820..4512)
                     /locus_tag="PTC08_001866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease"
                     /protein_id="HDK5683370.1"
                     /translation="MTTLPTAGKPIYYRDFIIVPVFILLQYTFPLLAEEVFPNLLKRL
                     FDYTLQPSGYSILFNVMMCLAQVIVIAIFMLLHRQHVVARIKTQLIGMRQHLWRIIIV
                     YLLLVSFIFIYQRVIPPMTIQDDLITIPLSFVTIGILTPIVEELLFRHLIIGELGKKW
                     GFRWMAVVSIIAFGAAHFLHFTSIWTFVPYMVGGIAMTYIYIASGRNILVAIALHIMI
                     NSVSQILSMLGI"
     gene            4774..5400
                     /locus_tag="PTC08_001867"
     CDS             4774..5400
                     /locus_tag="PTC08_001867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-dependent NADH-azoreductase"
                     /protein_id="HDK5683371.1"
                     /translation="MAKLLYITAHPLDELLSASMAAGKTFKETYEKAHPEDEVVHIDL
                     FKEDIPQIDADVFTGWGKLQNGETLTEAEEKKVNRLGEIVDEFINADKYVFVSPMWNL
                     SFPPVLKAYIDAVAVAGKTFKYTPEGPVGLLTDKKALHIQARGGFYSEGPGVDLEHGD
                     RYIKTMMAFFGVPSYETIIVEGHHAAPERSEEIKAHSLRQAEELGHNF"
     gene            5784..6308
                     /locus_tag="PTC08_001868"
     CDS             5784..6308
                     /locus_tag="PTC08_001868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HDK5683372.1"
                     /translation="MIRWLQQSTIASILLLIFRIYLGYGWFMAGLGKITNGKGFDAGG
                     FLQNAVLHPVIGVDGSTQYPLFTSFLEHIVLPMTPFINILIPISEIVVGLLLIFGLFT
                     PIGAFIGLVLNFLFLFAGTVSINPLYILIGFFIFVAGYNSGHFGVDRFLKSLLSKKFF
                     SIFNYHPETKDTSV"
BASE COUNT         2242 a         1301 c         1082 g         2158 t
ORIGIN      
        1 ctccccaatc tttgaccttg actaactttg actattgata tatactttaa ttacaaggaa
       61 ggattgggat atcaagtttt gctagcctca ttcttacgat ttatagattt acgacttatt
      121 aatgatttga taactgtcgg aaaacgaaat accatatcaa caacatcaaa atttttgtgt
      181 cccatttccg aaaatttaaa gtcgcgttag agctattcaa acactaacgt aatgaaggag
      241 agatgtatta tggcttttga tatgagacct tttaaccatt catttttcaa tatggaacct
      301 agtgatttct tcaaagattt cggtcgtcac atgttagacg aagcatttgc aacacctcat
      361 attagaacag atattaaaga actagatgat gcttacgtga tagaagcaga attgcccggt
      421 atggataaag aaaatattca attaaaattt gaaaacaacg tgttaactat tgctgcacaa
      481 aacactctaa aaaatcataa agaagatgaa gaaggacacg tcattcgaca agaacgccac
      541 ttcagtcgta tgcaacgtca atttactttt aataacgtag atgaaagcaa tactaaagct
      601 tcttatcaaa atggcatgtt aaatgtgaca ttaaacaaac gcaccccagg acgttcttca
      661 aactctgaca ttcctattga ttaaaacatc acactgctat atgaatgtca taatctttct
      721 atgttgagcg catcttgtcc cctcacatga tgcgcttttt acatatcatc aacgctttta
      781 tctccttact gttcattcat atccccagga attatctacg gtatgtctta actcataaaa
      841 ctagattgaa attccatgac acgaaaagcg ttgtacagtt tggctacacc ctatttgtta
      901 gattaaacaa actttgacgt tatcatattc atcacatcgt tcaacttata tgctcaaaca
      961 ttaaacaaat attaactatt attaaataca cttaataatg caatatttat ctatttttat
     1021 gttatagttg ttctaacaaa acaaaggagt tgtataatat gaataaaaca ttaattgctg
     1081 gtataacagt agccgcttta tcgacaggaa ttttcgccac agccacggga cacgaggcac
     1141 acgctcaagt gacggcacaa aatggtatcg ttttacatga tgattccaaa ttacttgctc
     1201 atgaattaga gtatgtggat gtattgatta atccaaatac ggacccacaa acaaaagcac
     1261 aacttcaaga ttattttgct aaacaaggtt taaactctgt aagtgacatc gttcaaaaag
     1321 caaaacaaga cggtctcgac acatcaaaat acaatcattt aatttaacat ataacgctta
     1381 tacactttct aacgcttaat ctattatgcc atcaccttat cgctatttgt aggtgatggc
     1441 ttttttatga ccagccactt tattttttaa tgtgggtcgc ccacctcact tcataaaata
     1501 aggtgattcc ctttgtcaat gttactctct aactttttaa tattcagtcc atcttttctt
     1561 tagaatcata ccttggggct tcgttatcat attcatatga actaacaagc atattgagga
     1621 ggcagtcgta tggacagaga catcaaaagt acgcgctctg aatggcgtca tattatttat
     1681 aatgaagtta aaaatttatt aaacaaagag atgaaagatt tacctgtcgc actcaaacca
     1741 acagatagca tgatagcaaa atatcaacgt atgaagattc caaaagaagg aaaaggtatt
     1801 gaggcagtga tggatttatt acataccgag gttttaaatt ataactatcg ttcgaatcat
     1861 ccccgcacat tttcgtttgt tccgggacca gcttcacaat tatcttggct tactgatttt
     1921 tttacgagtg cgcacaacat tcacgcttca aattttgcga atgcaccact tcctattgca
     1981 attgaacatc gattaattcg ctatttaagt gaagaaatag gtttcgattc cgcattgtct
     2041 ggcggcgtct ttgtgtcagg tggttcgatg gcgacattga ctgcgattac tgcgggtaga
     2101 gatgcgatga ttccactctc acaaatgtct gaagcaacgg tatatttaac agctcaagca
     2161 cacttttctg tcgcaaaagc attccacatt gctggttttg cgcaaacaca actccgctat
     2221 attccgactg acgattttta taccatggac gttaatgctt tagagcaaca aattgaatta
     2281 gacatcacta atggctatcg tcctattatg attgtcgcaa cggcaggaac taccaataca
     2341 ggcgccattg ataatttaac gcatattaca cgtattgcac gtcaacatca aatgtgggtt
     2401 catgctgacg gggcttttgg tttatcacac attttcactg aagaaggtaa aaaattacta
     2461 aaagacatcg acaaggtaga cagtgtcaca tgggatgcac acaagttgtt atttcaaaca
     2521 tacagctgtg ctatggttat cgttaaaaat aaaaatcatc tcctgtctac ttatggggtt
     2581 acagcagaat atttggatga tatcacttca acaaatgaac atatcgaccc agaaaaacta
     2641 ggtatagaat taacacgccc gcctcgcgga ttaaagctgt gggtaacgtt acaagtactc
     2701 ggcgaaaatg aaattaaacg acgtattgaa catgggcaag aaatggcgcg ctatgtcgaa
     2761 caacaagttc aacagatgaa aaattggaaa atcgtcacaa cctcacaact ttctattata
     2821 aatatccgct acgaagatcc aactaagaca ccggaagaaa atgatcaagt gatgcaattt
     2881 gctgcttcac gtatcataca atcaggttat gctgctacgt atactacaga attaagccat
     2941 cgccgtgtta ttcgtttttg tacaattcat ccagaaacga cacgcgctga cattgatggt
     3001 acattacagc gtctaaataa ctatgtccaa gaagcatcaa gccagccaca aacttaaagg
     3061 tctagaatac aaaagtgata tacggggctg ggatatcagt tgtcccaccc catgctttat
     3121 gtttgattct aacgtttcat gtcaatcctt cttcacttga tgtaatacga tagatgtgtt
     3181 gaattctgca atacgttcca ttttcaaaat caacgcattt aaactcgcaa tatcttttgt
     3241 atatccatgt atgatatatt tttcagttcc agtcacagca tagtattctc gaaaatccga
     3301 aaattgttga aggcgttttt caaattctga aattgcaatt ttaatttcgg tcactttcat
     3361 gaaaaaacca atcatgtaac ctaacttttc atagttcaca tctacattaa acccgtgaat
     3421 caccttcgac tctatcattt tagaaattcg atttttaaca ctgggttctg ataacatcac
     3481 tatagaagat atggttttca ctttcatacg tgcgtttgtt tttagcagtt ttaatatttt
     3541 tagatcaata tcatccatca aatgacctac tttctctatt aatattgact atgacctcga
     3601 aaacttcgct tcaaagtgaa cattgcagtg cttactctta ttgttttcat tatataaata
     3661 gaaacttgtc acattcaatt ttaaaatgat accccttatc gccttttcta tactaaattg
     3721 tcatactgat acacattcat ctctttacac aacgggtaga aatgacctat ttacacgatc
     3781 ccccacgtaa atgagaaaaa tgaaaaactt agacacgtat caaatgccca acatacttaa
     3841 aatttgagat actgaattaa tcataatgtg aagcgctatt gcaactaaaa tattgcgtcc
     3901 tgaagcgata tagatgtatg tcatcgcaat ccctccaacc atatagggga caaatgtcca
     3961 tatcgatgta aaatgaagga aatgcgctgc accaaaagca attatagaaa cgactgccat
     4021 ccatcgaaat ccccattttt ttccaagttc accaattatg agatgtcgaa ataacaattc
     4081 ttcaactatt ggagttaaaa tgccaatcgt cacaaaactt agtggtattg taattaaatc
     4141 atcctgtatc gtcattggag gaatgacacg ctgataaata aaaataaagc taactagcaa
     4201 taaataaacg atgatgatac gccacaaatg ttgacgcata ccaatgagtt gcgttttgat
     4261 cctagcaaca acatgttggc gatgtaacaa cataaaaatg gcgataacaa tcacttgggc
     4321 caagcacatc attacattaa aaagaatgct gtagcctgat ggttgtaacg tataatcaaa
     4381 aagcctcttt aatagattcg ggaaaacttc ttctgctaat aacggaaaag tgtattgcaa
     4441 taaaataaag acagggacaa tgataaaatc gcgataataa ataggtttcc ccgcagttgg
     4501 taaagttgtc atgtgaatac tcctttatat gtgtcacttt aatcacgtca attcactata
     4561 ccaataacag tacaccttta caataatgca ccgagccatt tgctttcccc actaaaccta
     4621 ccctgtcctt atgatgcttt tttcccataa atagaaactt tcacgaagca ttccaaaaaa
     4681 aaattacgaa ttcgaggttt ttttgttgat atatttttta tacctgttat aataacatta
     4741 tcaattcttg aaaaaaggaa ggaaatcata attatggcta aattacttta tattacagca
     4801 caccctcttg acgaattact ttcagcttca atggctgccg gtaaaacttt taaagaaact
     4861 tacgaaaaag cgcacccaga agatgaagtt gtacacatcg acttattcaa agaagatatc
     4921 ccacaaattg atgcagatgt ctttactggt tggggtaaat tacaaaacgg agaaacttta
     4981 acagaagctg aagagaaaaa agtaaatcgt ttaggtgaaa tcgttgatga attcatcaat
     5041 gcagataaat atgtattcgt ttcaccaatg tggaacttat cattcccacc tgtacttaaa
     5101 gcatatatcg atgcagttgc agtagcaggt aaaactttca aatatactcc agaaggtcct
     5161 gttggtttat taactgacaa aaaagcttta cacattcaag cacgtggcgg tttctactct
     5221 gaaggccctg gtgttgacct agaacacggt gaccgttaca ttaaaacaat gatggcattc
     5281 tttggtgtac cttcttatga aacaattatt gttgaaggac atcatgctgc tccagaacgt
     5341 agtgaagaaa ttaaagcaca ttcacttcgt caagctgaag aacttggaca caacttctaa
     5401 tattgacttt aaccttaaaa aggcgcttac catatccttt atggaagcgt cttttttgta
     5461 gtgtaatata tgcttatgtt ttattgtctg gtgcatttct ttagtcacat gattaatgta
     5521 attcccctct gccctcaaac catttagaaa gaagcaatca catttcaaat ttgcaccgtc
     5581 aacttcactt cccactttta agctatacct ctattgtccg ttacataaaa aataaatgat
     5641 attaaattca tctaatttgt gaacattgtc acattgatat tgtgcaatga gataggattg
     5701 tatataataa attcggaagt ataaaaagta tacttacgaa caattcaatg catttacaaa
     5761 tataatgagg aggcgtatgt ctaatgatta gatggttaca acaaagtact atagcaagta
     5821 ttttattgct tattttccgt atttaccttg gatacggttg gtttatggca ggtctaggaa
     5881 aaattacgaa tggcaagggg ttcgacgctg gtggttttct acaaaacgct gtgcttcacc
     5941 ctgttatagg tgtggatggt agtacacaat acccactatt cacttcgttt ttagaacata
     6001 ttgtgctacc gatgacacca tttattaata tattaatacc aatttcagag attgttgttg
     6061 gcctactatt aatttttggc ctattcactc caatcggggc attcatcggt ttagtattaa
     6121 actttttatt cttattcgct ggaaccgttt caatcaatcc actctatatt ttaatcggat
     6181 ttttcatctt tgtcgctggt tacaatagtg gacacttcgg cgtggatcgt ttcttaaaat
     6241 cacttttaag caaaaagttt ttcagcatct ttaactatca tccagaaact aaagatacaa
     6301 gcgtttaaac ttttattttg actatcaacc agggcgcact tgtgtggcag ttcaactgca
     6361 tgatatcaca agtacgccct ggttttttat gttttcatat tgcattgcca tacatcactt
     6421 tcaaatttca gcaatgattc aaaaatttat taaactctct atttatcgct taattcgtgc
     6481 ctattatatc gtgggttttc atcaaacact ttaacacaac agatttatct tacttaaaaa
     6541 gagtcccatt ttttgaaaca tcattcacta agaattcaac ggcttctcta cacctcgcac
     6601 tgattcttcc attcaatatg tccatcaaaa tttagtaata gtaagttact tatatcggat
     6661 taaatcacta ttagcactgt atttatgtca ctttatttta taattaagcc tcaatcttta
     6721 ttaaatatat aaatcacgat gacataattt gtcctttaag atattcgtgt aaagtgtttg
     6781 tta
//
LOCUS       DANHOL010000121         6686 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.122, whole genome shotgun sequence.
ACCESSION   DANHOL010000121 DANHOL010000000
VERSION     DANHOL010000121.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 6686)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6686)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6686
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.122"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            54..254
                     /locus_tag="PTC08_001869"
     CDS             54..254
                     /locus_tag="PTC08_001869"
                     /inference="COORDINATES: protein motif:HMM:TIGR01168.1"
                     /note="The YSIRK form of extended signal peptide directs
                     nascent proteins to the cross-wall site, while signal
                     peptides lacking YSIRK direct proteins instead to the cell
                     pole. A large fraction of YSIRK proteins are surface
                     proteins anchored by sortase-mediated processing of a
                     C-terminal LPXTG motif; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YSIRK-type signal peptide-containing protein"
                     /protein_id="HDK5683373.1"
                     /translation="MKHMNSKSNRTLSRFSIRKCSVGTASFLIGTVAFFGIHHEAFAA
                     ENSTTPVTVAQLQRADPKVAPI"
     gene            383..1987
                     /locus_tag="PTC08_001870"
     CDS             383..1987
                     /locus_tag="PTC08_001870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_086558228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS1182-like element IS1182 family transposase"
                     /protein_id="HDK5683374.1"
                     /translation="MYQNYTINQLCLPIDLEIKLEENDFAHAIVQFVDSIPDEVFLPY
                     YQSMGRPQYHPRMLLSIILCAYIQGVYSGRQIQNMLIDSIRMRYLSQEQFPNFRTINR
                     FRVHPIMNDILDHSFVQFRELLVQSGLISGSALYIDGTKIEADANKYSFVWKKSILKY
                     KDSLDQKALENYQQMVETKILPELIDDLKDELSIEEIERIRQSLEEKENQLIEAIDQT
                     ETVEERKLLRKEKSEVHKQKKRFDDFAQRKMSYEEQLVIMGVRNSFSKTDHDATFMRM
                     KEDHMLNGQLKPGYNIQLATENQFALAYDCYPNPTDTRTFIPFLEKIESKIGLPENIV
                     ADAGYASEENYCYVLDETESTPIIPHQGYLKEKKRAHKQNQFHRDNWTYNELDDYYIC
                     PNQKRVVFSHYSQRKDRNGFIRNFKIYECEDCTGCPLREKCTKAKEGKNRRLNINPTW
                     EYIKIKANEKIESKETASYYAQRKIDVETVFGNIKQNMKFKRFHVRGAEKIFKEMGLV
                     FLAHNFRKLVTRVRKYEGKTIIQNQI"
     gene            complement(2708..3367)
                     /locus_tag="PTC08_001871"
     CDS             complement(2708..3367)
                     /locus_tag="PTC08_001871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RibD family protein"
                     /protein_id="HDK5683375.1"
                     /translation="MKPKIIMHTQISLDGRIKGFDNPEVYYQVAGGIHSDAVLFGSNT
                     VFTAFEKYPAETEADFEKIITSPEDPRPIGVIPDSRGILRSLHCLRNLGYLKEIVILV
                     STATPKEYLNYLEERHYPYIVSGNDHVDYEKAFQILHEQYGCKYMRTDSGGGLTNKLL
                     ENGLIDEISLVISPCFVGNKEKQLFDNLLLSEKVNLELQGTENAEHGCLSLRYAVKNK
                     D"
     gene            complement(3478..3885)
                     /locus_tag="PTC08_001872"
     CDS             complement(3478..3885)
                     /locus_tag="PTC08_001872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WYL domain-containing protein"
                     /protein_id="HDK5683376.1"
                     /translation="MVLNRFCRLRNEYRNFRVDRIKSICIEEELCQSHDGSLEQILKQ
                     MLSYKKLYNVILRAEKGETYNSIKNRYSLGFLEETDLGSKMEIEFQTDSFEILSKQLI
                     EYGSGIEIVQPDELKCITRKHLAQITNHCLNLI"
     gene            complement(3858..4430)
                     /locus_tag="PTC08_001873"
     CDS             complement(3858..4430)
                     /locus_tag="PTC08_001873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001079940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH domain-containing protein"
                     /protein_id="HDK5683377.1"
                     /translation="MNRINRVTSILIQLQSKKIIPAKEIAQRFNISLRTVYRDIRTLE
                     EAGIPIGSEAGKGYFLVEGFLLPPVMFTAAEVGALITAGKFLNCHGDESFIKDFDSAM
                     YKIKSILKHGEKNYAQELENSINVYSTSGQKNTLADNVIAAIQTAICNKRVISIQYPA
                     SGGQEPESRMIEPISLGFYEQNWYLIGFAG"
     gene            complement(4706..5500)
                     /locus_tag="PTC08_001874"
                     /note="aph(3')-IIIa"
     CDS             complement(4706..5500)
                     /locus_tag="PTC08_001874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032491780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside O-phosphotransferase
                     APH(3')-IIIa"
                     /protein_id="HDK5683378.1"
                     /translation="MAKMRISPELKKLIEKYRCVKDTEGMSPAKVYKLVGENENLYLK
                     MTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLMSEADGVLCSEEY
                     EDEQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWE
                     EDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGRADKW
                     YDIAFCVRSIREDIGEEQYVELFFDLLGIKPDWEKIKYYILLDELF"
     gene            complement(5593..6135)
                     /gene="sat4"
                     /locus_tag="PTC08_001875"
     CDS             complement(5593..6135)
                     /gene="sat4"
                     /locus_tag="PTC08_001875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000627290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="streptothricin N-acetyltransferase Sat4"
                     /protein_id="HDK5683379.1"
                     /translation="MITEMKAGHLKDIDKPSEPFEVIGKIIPRYENENWTFTELLYEA
                     PYLKSYQDEEDEEDEEADCLEYIDNTDKIIYLYYQDDKCVGKVKLRKNWNRYAYIEDI
                     AVCKDFRGQGIGSALINISIEWAKHKNLHGLMLETQDNNLIACKFYHNCGFKIGSVDT
                     MLYANFENNFEKAVFWYLRF"
     gene            complement(6132..>6686)
                     /locus_tag="PTC08_001876"
     CDS             complement(6132..>6686)
                     /locus_tag="PTC08_001876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032491779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside 6-adenylyltransferase"
                     /protein_id="HDK5683380.1"
                     /translation="IKVLIDKDCRIKRDIVPTDIDYHVRKPSAREYDDCCNEFWNVTP
                     YVIKGLCRKEILFAIDHFNQIVRHELLRMISWKVGIETGFKLSVGKNYKFIERYISED
                     LWEKLLSTYRMDSYENIWEALFLCHQLFRAVSGEVAERLHYAYPEYDRNITKYTRDMY
                     KKYTGKTGCLDSTYAADIEERREQ"
BASE COUNT         2023 a         1424 c         1139 g         2100 t
ORIGIN      
        1 acacaatcga ttagaattta aatcgacaaa agttaaatgg agatgatatt taaatgaaac
       61 acatgaactc gaaaagtaac cgaacgctct ctcgcttttc aattcgaaaa tgctctgtgg
      121 ggacagcatc gtttttaatt ggaactgttg cgtttttcgg aatacatcac gaggctttcg
      181 cagctgaaaa ctcaacaact cccgtcactg tagcgcaatt acaaagggct gacccaaaag
      241 tagctcctat atgaaaaata gaggtctttc catttagata gtagtggaaa gacctctatt
      301 tatcttttga aagtgaatac aaaaataaag cacactctgc tataatatag gtgattaatc
      361 catttgagag aggtgcttta tcatgtatca aaattatacc ataaaccaac tttgtttgcc
      421 tatagatctt gaaattaaat tagaagaaaa tgattttgct catgccattg tgcagtttgt
      481 tgactctatt cccgatgaag tctttcttcc ttattatcaa tctatgggta gaccccaata
      541 tcatcctcgt atgctacttt ccattattct ttgtgcctat attcaagggg tttattcggg
      601 ccgccaaata caaaatatgc tgatagatag tattcggatg cgctacttat ctcaagagca
      661 attccctaac tttcgtacta ttaatcgttt tcgcgttcat ccgattatga acgatattct
      721 agatcattca tttgttcaat ttcgtgagct actggttcaa agtggcttaa tcagtggcag
      781 tgctctatac attgatggta caaaaattga agcggatgcg aataaatact ctttcgtttg
      841 gaaaaaaagt attttaaagt ataaggatag ccttgatcaa aaagcccttg aaaactacca
      901 acaaatggtg gaaacaaaaa tcttacctga gttaatagat gatttaaagg atgaactttc
      961 tatagaagag attgaaagga ttcgtcaatc tttggaagaa aaggaaaatc aattaattga
     1021 agcgattgac caaaccgaaa cagtagaaga acgaaaatta cttcgtaaag aaaaatctga
     1081 agttcataag cagaagaagc gattcgatga ttttgcccaa agaaaaatga gctacgaaga
     1141 acaattagtg attatgggtg tacgcaatag tttctcaaag acggatcatg acgctacttt
     1201 tatgcgaatg aaagaagatc acatgcttaa tggccaacta aaaccaggtt ataatattca
     1261 acttgcgaca gaaaatcaat ttgctcttgc ttatgattgt tatccaaatc caacagatac
     1321 acgaacattt atcccatttc ttgaaaagat tgaatcaaaa ataggtttac cagaaaatat
     1381 tgtcgcagat gccggttatg caagtgaaga aaattattgt tatgtgttag acgaaacaga
     1441 atccaccccc atcattccgc atcaaggtta cttaaaagag aagaaacgcg cccataaaca
     1501 aaatcagttt catcgagata attggactta caacgagttg gatgattact atatttgtcc
     1561 caatcagaaa agagtagtgt tctcacatta ttcacaacgt aaagatagaa atggatttat
     1621 tcgaaacttc aaaatctatg aatgtgaaga ttgtacagga tgtccattga gagagaaatg
     1681 taccaaagca aaagaaggaa aaaatcgacg tttgaatatt aatccaacct gggaatatat
     1741 aaaaataaaa gcgaatgaaa agatagaaag caaagaaaca gcctcatact atgcgcagcg
     1801 aaagatagat gtcgaaacag tttttggaaa cattaaacaa aatatgaaat ttaaaagatt
     1861 ccatgtccga ggagctgaaa aaatttttaa ggaaatggga cttgtatttc ttgcgcacaa
     1921 ttttaggaaa ttagtaacta gagtaaggaa atatgaggga aaaacaatca tacaaaacca
     1981 aatatagggg gaaaatcctc tatatttcat ccaaaaaaaa caaaaatcga agacatcttt
     2041 cacgggtgcc ttcgattttt tggttcaaaa gggactaatg ggtcagcccc ctcaaaatta
     2101 ccagagatta agctcagcca gatataagga ctccagcctt actttctacg caacaacgcc
     2161 acacactcca catgccttga gtgggcaaaa aagatgtcgc accccactgg tatccccttg
     2221 gcggaagccc atatttctga aacagtcgcc tggataggct atttttcatt gatttggtgc
     2281 ctgcttttgc gttacaatcc aagtaattgt aagcaataaa gccttcaaaa gcatgttgtc
     2341 ctcttgaagg ctttattcgg tacaacttta aaattggttt acttatcttt atcttcctct
     2401 ctaagatact taactagccc cggataattg cttatcctta cagttcggat caattagaat
     2461 tagccgaaaa cggcggcgaa gaaacgaacc accgagaagc accgccgcat tgccgagctt
     2521 gataccctca ttgaacgact gtatgcggac cggaaaaggc gcggttgacc gccttgccct
     2581 caaaggctta ggggcatatc aactatatat tggggccgag tgccgttact ttaacaccgc
     2641 cgctagccat gagcttatgc ttcctttagg acactgtccc aacagacact ttttaaagta
     2701 tgctgcacta atccttattt ttcacagcat agcgcaatga cagacagcca tgttctgcat
     2761 tctctgttcc ctgcaattcc aaattaactt tttcagataa cagaaggtta tcaaatagtt
     2821 gtttttcttt attacctaca aaacatggtg atatcacaag actgatttca tcaataagtc
     2881 cgttttctaa taatttgttg gttaatccac cgccactgtc tgtccgcatg tatttacacc
     2941 catattgctc atgcaggatc tgaaaggctt tttcatagtc cacatgatca tttcctgaca
     3001 caatatatgg gtaatgcctt tcctccaaat aattcaaata ttccttcgga gtggcagttg
     3061 ataccagaat gacaatttcc ttcagatatc caagatttct taagcaatga agacttctca
     3121 agatacctct gctgtcaggt atgactccta ttggtctggg gtcctccggg cttgttatga
     3181 ttttctcaaa atcagcctct gtttcagcag gatatttttc aaatgcagta aaaacagtat
     3241 tggacccaaa cagcaccgca tccgaatgaa ttcccccggc aacctggtag taaacttccg
     3301 gattatcaaa gcctttaatg cggccatcaa ggctaatttg tgtgtgcata attatctttg
     3361 gtttcatatt tttcaatcct cctttttgat agtagaatat cataatacac tgacagctgt
     3421 atgtcagcag gggatatgaa accttacaaa aaatacataa cagaccaatc gctttctcta
     3481 aatcaagttt aggcagtgat tcgtaatttg tgccaggtgt ttacgggtta tgcattttaa
     3541 ttcatcaggt tggactattt caatgcctga tccatattca atcagctgct tgctcaatat
     3601 ctcaaaggaa tctgtctgga attcgatttc cattttactt cccaaatcgg tttcttcaag
     3661 gaagccgaga gaatacctgt tcttgataga attgtatgtc tccccttttt cagctctaag
     3721 aattacatta tatagttttt tatatgaaag catttgtttt aatatttgtt ccaaagagcc
     3781 atcatggctt tgacagagct cttcttctat gcaaatgctt ttaatccgat ccacacgaaa
     3841 attcctatat tcatttctta gcctgcaaaa ccgattaagt accagttctg ttcataaaac
     3901 cccagtgata taggctctat cattctgctt tccggttctt gccctcctga tgcaggatat
     3961 tgaattgata ttaccctttt attgcagatt gcagtctgaa ttgctgcaat aacgttatcc
     4021 gccaatgtat ttttctgtcc agatgtgctg tacacgttaa tactgttctc caactcctgt
     4081 gcatagtttt tttcaccatg cttcaaaata gatttgattt tatacatagc tgaatcaaaa
     4141 tcctttataa atgattcatc tccatggcaa tttaaaaatt tccctgctgt aatcaatgca
     4201 cccacttccg ccgctgtaaa cattaccggc ggaagtagga agccctctac aagaaaatat
     4261 ccttttccgg cctcagatcc aattggtatt ccggcttctt caagtgtccg gatatctctg
     4321 taaactgtcc ttaagcttat attaaatcgc tgtgcaattt ctttggcagg aattattttt
     4381 tttgattgca gctgaataag aatagaggtt actctgttaa tcctgttcaa attttattcc
     4441 tcctctgtga cttccataaa aagtatatcc tatgcgttct taagctagct gctgttagtg
     4501 cttctcattg caccctggtt ataaaagcca tactcacaaa cctcttcacc aaaactcttt
     4561 acatctctaa tatagaactc tatctagcga acttttagaa aagatataaa acatcagagt
     4621 atggacagtt gcggatgtac ttcagaaaag attagatgtc taaaaagctt gtagttaaag
     4681 ctttttagac atctaaatct aggtactaaa acaattcatc cagtaaaata taatatttta
     4741 ttttctccca atcaggcttg atccccagta agtcaaaaaa tagctcgaca tactgttctt
     4801 ccccgatatc ctccctgatc gaccggacgc agaaggcaat gtcataccac ttgtccgccc
     4861 tgccgcttct cccaagatca ataaagccac ttactttgcc atctttcaca aagatgttgc
     4921 tgtctcccag gtcgccgtgg gaaaagacaa gttcctcttc gggcttttcc gtctttaaaa
     4981 aatcatacag ctcgcgcgga tctttaaatg gagtgtcttc ttcccagttt tcgcaatcca
     5041 catcggccag atcgttattc agtaagtaat ccaattcggc taagcggctg tctaagctat
     5101 tcgtataggg acaatccgat atgtcgatgg agtgaaagag cctgatgcac tccgcataca
     5161 gctcgataat cttttcaggg ctttgttcat cttcatactc ttccgagcaa aggacgccat
     5221 cggcctcact catgagcaga ttgctccagc catcatgccg ttcaaagtgc aggacctttg
     5281 gaacaggcag ctttccttcc agccatagca tcatgtcctt ttcccgttcc acatcatagg
     5341 tggtcccttt ataccggctg tccgtcattt ttaaatatag gttttcattt tctcccacca
     5401 gcttatatac cttagcagga gacattcctt ccgtatcttt tacgcagcgg tatttttcga
     5461 tcagtttttt caattccggt gatattctca ttttagccat ttattatttc cttcctcttt
     5521 tctacagtat ttaaagatac cccaagaagc taattataac aagacgaact ccaattcact
     5581 gttccttgca ttctaaaacc ttaaatacca gaaaacagct ttttcaaagt tgttttcaaa
     5641 gttggcgtat aacatagtat cgacggagcc gattttgaaa ccacaattat gatagaattt
     5701 acaagctata aggttattgt cctgggtttc aagcattagt ccatgcaagt ttttatgctt
     5761 tgcccattct atagatatat tgataagcgc gctgcctatg ccttgccccc tgaaatcctt
     5821 acatacggcg atatcttcta tataagcgta ccggttccaa ttttttcgca gtttaacttt
     5881 tccgacgcat ttatcgtctt ggtagtaaag atatattatc ttatcagtat tgtcaatata
     5941 ttcaaggcaa tctgcctcct catcctcttc atcctcttcg tcttggtagc tttttaaata
     6001 tggcgcttca tagagtaatt ctgtaaaggt ccaattctcg ttttcatacc tcggtataat
     6061 cttacctatc acctcaaatg gttcgctggg tttatcgata tctttcaggt gccctgcttt
     6121 catttctgta atcactgttc ccgcctctct tctatatcag cggcatatgt gctatccagg
     6181 cagccggttt taccagtgta ttttttatac atgtccctgg tatattttgt tatattccta
     6241 tcatactccg gataggcata atgaagcctt tccgccacct caccggatac cgccctgaac
     6301 aattgatggc atagaaataa tgcttcccat atgttttcat aggaatccat ccggtaggtg
     6361 gacaaaagtt tctcccacaa atcctcggat atataccttt caataaactt atagttcttg
     6421 cctacactta atttaaagcc tgtttcgatg ccgaccttcc atgatatcat tctcagcagc
     6481 tcatggcgaa caatctgatt aaaatgatca atagcaaata aaatttcctt acggcacaat
     6541 cctttaataa cataaggtgt tacattccaa aattcattgc agcaatcatc atactccctt
     6601 gcgcttggct ttcttacatg ataatctata tcagtcggaa ctatgtccct tttaattcta
     6661 caatctttat caattagaac ctttat
//
LOCUS       DANHOL010000122         6632 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.123, whole genome shotgun sequence.
ACCESSION   DANHOL010000122 DANHOL010000000
VERSION     DANHOL010000122.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 6632)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6632)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6632
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.123"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            68..1294
                     /locus_tag="PTC08_001877"
     CDS             68..1294
                     /locus_tag="PTC08_001877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NupC/NupG family nucleoside CNT transporter"
                     /protein_id="HDK5683381.1"
                     /translation="MYLIINIIGLFVFLGVAFLFSRDRKNIQWASIATLVVLNLILAW
                     FFVYFPAGTLFVKKAAEGISWVIDAAFTGIGFAFHSFTAPKQLDMAVAALFPILLVVP
                     LFDILMYLRILPWIMRGIGWVLAKITRQPKFEAFFGIEMMFLGNTEALAVSSEQLKRM
                     KETRVLTLAMMSMSSVSGAIVGAYVTMIPGELVLTAIPLNIVNAMIVASILNPVKVEV
                     DEDVIYDLRANEARQPFFSFLGDSVLNAGKLVLIIIAFVISFVALAELADRLIHLVTG
                     GIGHLFNAKGSFGLDQILGVFMYPFALLLGLPLDEAWLVAQNMAKKIVTNEFVVMGQI
                     AGEVNDYAPHRRAVISTFLISFANFSTIGMIIGTLKGIVNEKTSDFVSKYVPMMLLAG
                     ILVSLLTAGFVGLFAW"
     gene            1768..2601
                     /locus_tag="PTC08_001878"
     CDS             1768..2601
                     /locus_tag="PTC08_001878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YitT family protein"
                     /protein_id="HDK5683382.1"
                     /translation="MSRTIRDLLLVIVGAFIFSAGVNAFVIAGDLGEGGVTGLAIVLY
                     YAFHWSPAIINFVVNAVLIAIGYKFLSKRSMYLTIVATILISVFLSLTHTWQVKSDDV
                     IINAVFGGFSVGLGIGIIVLAGGTTAGTTILARIANKYLDVSTPYALLFFDLIVVLIS
                     LTVIPLDRALFTVVSLYIGTKVMDFVIEGLNPKKAVTIISKEPDRIAKMIDEDIGRGV
                     TILNGRGYFSKQETDVLYAVISKTQLSRTKRLIRKIDHSAFVVVHDVRDVYGNGFLVE
                     D"
     gene            2968..3771
                     /locus_tag="PTC08_001879"
     CDS             2968..3771
                     /locus_tag="PTC08_001879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDK5683383.1"
                     /translation="MSRLTGKEVTIGYGDRVIVDNLDVAIPDGAITSIIGPNGCGKST
                     LLKALSRLLNTKSGEIYLDGKNIHVQSTKEIAKKIAILPQSPDVADGLTAGELVSYGR
                     FPHQKGFGRLNEEDKKAIDWAMRVTGTIDFKHRAVNDLSGGQRQRVWIAMALAQKTDI
                     IFLDEPTTYLDISHQLEILELVQELNAEHGTTIIMVLHDINQAIRFSDHLIAMKDGAI
                     IKQGDTHEVLTNEILERVFNIDAELSTDPRTGKPMLVTYNLLCKHYEKA"
     gene            3797..4801
                     /locus_tag="PTC08_001880"
     CDS             3797..4801
                     /locus_tag="PTC08_001880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HDK5683384.1"
                     /translation="MLKKRVNMKWSDAVQFICAVIVLCIVFIIATLLGEAHVNLSTIF
                     EAIFHYNPKIQAHNVISEVRIPRNIGAVLVGMALATAGAVIQGVSKNGLADPGLIGLN
                     AGAAFALALTFALFPGASFIAHIIAGFIGAMLGGAIVMTIGASRRDGFNPMRLILAGA
                     AVSALLTALSQGVALIFRLNQAINFWSAGGVSSTNWQQIQISVPIILVTLILLILMSR
                     QLTILSLGDALAVGLGQNIKMVRTVALILSMLLAGVSVAMVGQVAFVGLIVPHIVRSW
                     VGTDYMKVLPMTAVVGGTLVLGSDLVARLLGEAPMSAVISFIGVPYFFYLIRKGGRTL
                     "
     gene            4798..5814
                     /locus_tag="PTC08_001881"
     CDS             4798..5814
                     /locus_tag="PTC08_001881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HDK5683385.1"
                     /translation="MIHPGLKRKQQLTFISTLILLMLAIVWNLTTGEYAMSYGQIIQT
                     FLGQGDAADRLILIDFRLPRVVITLLAGIALSMSGAVLQSVTKNPLAEPGILGINAGS
                     GFAIALFVSLGQIHADQFVYVLPIVSMLGGLGTALAIFILSYQGDKGLSPASMVLIGV
                     GMATALSGAALTIMATFNKEQSEFIATWLAGNIWGDTWPFVFAFLPWLIVLVPFLFIK
                     SETLNILNTNDTVSKALGIRLNKERFILVLVAVTLSSVAVAVAGAIGFIGLMGPHIAK
                     SIVGPRHQLFLPIAIIIGALLLVVADTLGKILLQPSGLPTGLIVAVIGAPYFLYLMYR
                     TRSV"
     gene            5981..6478
                     /locus_tag="PTC08_001882"
     CDS             5981..6478
                     /locus_tag="PTC08_001882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002490528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683386.1"
                     /translation="MQDLIKRHVLNGEFDAVKNLMSATDFLEFEEAYISSAYENESVM
                     YYTCLLYMIKEAETTEIHDLAFLLLVYPLSDVPGAIEAAYYHAESSIDLTKGKEVKSL
                     LQMLLLHALPEPVISDKKAFEVSKQILKLDPSNKVARNVLKDTAKRMDQVVVDFDQLS
                     HYKDA"
BASE COUNT         1895 a         1078 c         1495 g         2164 t
ORIGIN      
        1 cagtatgtaa acgtcgtggt atactaatgt tgttaaaaaa cagttgaaag gtaaaaggta
       61 tctccttatg tatttgatta ttaacattat tgggttgttt gtctttttag gggttgcatt
      121 tttattctca cgtgaccgta aaaacattca atgggcttct attgcgacac ttgttgtcct
      181 taacttgatt ttggcatggt tttttgtgta tttcccagct ggtactttat ttgttaaaaa
      241 ggctgctgaa gggatttctt gggttattga tgcagcgttt acggggattg gctttgcatt
      301 ccatagcttc acagcgccaa aacaattgga catggcagta gcggcgctat tcccgatttt
      361 attagttgtg ccactttttg atatcttgat gtatttacgt attttgccat ggattatgcg
      421 cggaattggt tgggtacttg ctaaaattac acgtcaacct aaattcgagg cattcttcgg
      481 tattgaaatg atgttcttag gaaacactga agcacttgcg gtttcaagtg aacaattaaa
      541 acgtatgaaa gaaacacgtg tgctgacatt agccatgatg tcgatgagtt cggtttctgg
      601 tgcgattgtt ggtgcttatg tgacaatgat tccaggtgaa ttagtattga cagcgattcc
      661 gttaaacatt gtcaacgcga tgatcgttgc ttctatttta aaccctgtga aagttgaagt
      721 agacgaagat gtgatttacg atttacgcgc aaatgaagca cgtcaaccat tcttctcatt
      781 ccttggtgac tctgtgctaa atgctggtaa attagtattg atcattatcg ctttcgttat
      841 cagtttcgtc gcattagcag aattagcaga ccgtttaatt cacttagtta ctggtggcat
      901 tggtcactta ttcaatgcaa aaggtagctt cggtcttgac caaattttag gtgtattcat
      961 gtatccattc gcattattac ttggtttacc attagatgag gcatggttag ttgcacaaaa
     1021 tatggcgaag aaaattgtaa cgaatgaatt tgttgttatg ggtcaaatcg caggagaagt
     1081 gaatgattac gcacctcacc gtcgtgcagt catttcaaca ttcttaatct catttgcaaa
     1141 cttctcaaca atcggtatga ttatcggtac gttaaaaggt attgtgaatg aaaaaacatc
     1201 tgactttgta tctaaatatg taccaatgat gttattagca ggtattttag tatcgttatt
     1261 aacagctggt ttcgtaggtt tattcgcgtg gtaaaatcaa ccgcttgtga atgaatcaca
     1321 acgtttttga atataggaac taggggtttg gactcaatga tgtctgagcc tctttcttat
     1381 gttggcaaga cactttcaat gacatgcgtt aggagaagtg tgaataaaaa tagagcagcc
     1441 cagctgatgc tgaactgcct tagacgggaa atgaataatt ttgattgata ttcgagcatg
     1501 atatcaatct cgagcaaaaa atctcttgta ctattaaaaa cacaaaggag atggcctctt
     1561 gttgactaga tgactagcaa caaataaggt agtttctatt atacacatat tctcgccaaa
     1621 agtaaacgaa atattcagaa atttaaaatt ttattttgcg actgctgaaa agagttgtca
     1681 gtcaagggtt tcgctttgtt acaaagttgt gatagtatgg cttatgacga gttagaaata
     1741 atataaaaga atgggaggaa tcattgggtg agcagaacaa taagagattt gttactagtt
     1801 atcgttggcg catttatttt ttcagcgggg gttaatgcat ttgttatcgc cggtgatctc
     1861 ggggaaggtg gtgtgacagg tctcgctatc gtactttatt atgcgtttca ttggtcgcct
     1921 gccatcatta actttgtcgt taatgcggta ttgattgcga ttggttacaa atttttaagt
     1981 aaaagaagta tgtatttaac gattgtcgct acaatattaa tttctgtatt tttaagttta
     2041 acacatactt ggcaagtcaa atcagatgat gtcatcatta atgctgtgtt cggtgggttt
     2101 tcagtcggtt taggtattgg tattatcgtt ttagccggtg gtacgacagc tggaacgacc
     2161 attttggcac gtatagcgaa taagtattta gatgtcagta caccttatgc attgctcttt
     2221 tttgatttaa ttgtcgtgtt gatttcattg acagtgattc cattagatcg cgcactgttc
     2281 accgtggtca gtttatatat cggcacaaaa gtgatggatt ttgttattga aggtttaaat
     2341 cctaaaaagg cagtgacgat tatttcaaaa gaacctgacc gcatcgctaa aatgattgat
     2401 gaagatatcg gtagaggtgt gacgatttta aatgggcgtg gttatttctc caaacaagaa
     2461 acggatgtgc tttatgccgt aattagtaaa acgcaattgt cacggacgaa gcggttaatt
     2521 cgtaaaattg accatagtgc gtttgtagtc gtgcatgacg tgcgtgacgt ctatggtaat
     2581 ggatttttag tagaagatta aaagtaaaaa gaagggttga gcatatcata tcatgatgtc
     2641 tcagcttctt ttttatgtgt aatctgggca gaaaagaagt ttgaaattgt ttttgactac
     2701 gagtgaatca aaatttttag atacatgcgt atacataagg atatggatga agtttaattg
     2761 agattatttt gagttagaaa tttttgataa atgatgatat acttggcata aacatgataa
     2821 tgattatcaa ttgcataaaa tgtatataga tttcgcaata ttagggaatg aaaagctcac
     2881 gattcgtggt gagtggaaac agtaacgcct taatcacgtg atggatagtg tcctagggcg
     2941 taatcgtttt aagaaagaag gatgacgatg agtagattaa caggtaaaga ggtcacaatt
     3001 gggtacggtg accgtgtcat tgttgataat ttagatgtcg caattccaga tggtgccatt
     3061 acgtcaatta ttgggccaaa tggctgtggc aaatcaacat tattaaaagc actttctcga
     3121 ttattaaata caaaaagtgg tgaaatttat ttagacggca aaaatattca tgtccagtca
     3181 acaaaagaaa tagctaaaaa aatagcgatt ttacctcagt ctccagatgt ggcggatggt
     3241 ttaacggctg gagagcttgt ttcttatggt cgcttcccac atcaaaaggg ctttggtcgc
     3301 ttgaatgaag aagataaaaa agcgattgat tgggcgatgc gtgtgacagg aacgatagat
     3361 tttaagcatc gtgcagtcaa tgatttaagt ggtgggcaac gccaacgtgt ttggattgcg
     3421 atggcgctcg cacaaaagac agacattatt tttcttgatg aaccaacaac gtatttagat
     3481 atttcacacc aacttgaaat tttagaactt gtacaagaac tgaatgctga acatggcacg
     3541 acaattatta tggtattaca cgatattaat caagcaattc gtttttcaga tcaccttatc
     3601 gcaatgaaag atggcgctat tattaaacaa ggtgatacgc atgaagtact gacgaatgaa
     3661 attttagaac gcgtatttaa tattgatgca gagttaagta cagatccacg tacaggtaaa
     3721 ccgatgctcg tgacctacaa cctgttgtgt aaacattatg aaaaagctta aaggttgaat
     3781 taacggagta tagaacatgt tgaaaaaaag agtgaacatg aagtggagtg atgcggtaca
     3841 atttatctgt gccgttatcg tactatgtat tgtatttatt attgcgactt tattaggtga
     3901 agcgcatgtg aatttaagta ccatttttga agcgattttt cattataatc cgaaaatcca
     3961 agcacacaat gtgatttcag aagttcgaat ccctcgaaat atcggtgctg tgcttgtagg
     4021 gatggcactt gcaacagcgg gtgccgttat tcaaggtgtc tctaaaaatg gacttgcaga
     4081 ccccggctta attggtttaa atgctggggc tgcttttgct ttagcgctca ctttcgcact
     4141 gtttccaggg gcgtcattta ttgcgcatat tattgctggt tttatcgggg cgatgctagg
     4201 tggcgcgatt gtgatgacga ttggtgcgtc gagacgagat ggttttaacc caatgcgtct
     4261 gattttagct ggtgctgctg tcagtgcgct gttaacggca ctcagtcaag gtgtggcgct
     4321 catttttcgt ctcaatcaag ccattaactt ttggagcgca ggtggtgtgt caagcacaaa
     4381 ttggcaacaa attcaaatca gtgtgccgat tattttagtg actttaatct tattgatatt
     4441 gatgagtcga cagttgacga ttttgagttt gggcgatgcg ttagctgtag ggctcggtca
     4501 aaatataaag atggtccgca cagtcgcttt aattttatcg atgttactgg caggagtttc
     4561 tgtagcgatg gtcggtcagg ttgcatttgt cggtctcatc gtcccgcata tcgtacgttc
     4621 ttgggtcggt acggattaca tgaaagtcct tccaatgact gcagtagtag gtggtacgct
     4681 cgttttaggt tcggatctcg tggcgagact gttaggcgaa gcgccaatga gtgccgttat
     4741 ctcctttatc ggtgtccctt actttttcta tttgattcgt aaaggaggac gtacactatg
     4801 attcatccgg gtttaaaacg aaagcagcag ttgacattca ttagtacact catactttta
     4861 atgctcgcaa tcgtatggaa tttaacgacg ggtgaatatg caatgtcgta cggtcaaatt
     4921 attcaaacat ttctagggca aggtgatgcg gcagatcgac ttatattaat tgactttcgt
     4981 ttgccacgtg ttgtcattac gttgttagcg ggtattgctt taagtatgag tggtgctgta
     5041 ttacaaagtg ttactaaaaa tcctctcgca gaacccggaa ttttaggcat caatgcagga
     5101 agtggttttg ctatcgcgtt attcgtctct ttaggtcaaa tacacgctga tcaatttgtc
     5161 tatgttttac ctatcgtcag tatgttaggg ggtttaggaa cagcactcgc catttttata
     5221 ttaagctacc aaggcgataa agggctttct ccggcaagta tggtgctgat cggtgtcgga
     5281 atggccactg cattatctgg tgcggcgctc acgattatgg cgacctttaa taaggagcaa
     5341 tctgaattta ttgcaacttg gctagccgga aatatatggg gcgatacatg gccgtttgtg
     5401 tttgcctttt taccatggct catcgtttta gtgccatttt tattcatcaa gtctgaaaca
     5461 cttaacattt taaatacgaa cgatacagtg tctaaagcat tgggcattcg actcaataaa
     5521 gaacgcttca ttttagtttt agtagccgtg acgctttcaa gtgttgcagt cgctgttgcc
     5581 ggtgcaatag gtttcatcgg tttaatgggc ccgcacatcg cgaaatctat cgtcggtccg
     5641 agacatcagc ttttcttacc gatagccatt atcatagggg cattattact cgttgttgca
     5701 gatacgcttg gaaaaatact cttacaaccg agtggcttac ctaccgggtt aatcgttgct
     5761 gtgattggtg cgccatattt cttatatttg atgtatcgca cacgttctgt ataatttcag
     5821 cctcaagatt gaagtatatt tctataaaat atgttaaaat gttcattgta ttaaaaaatt
     5881 tgataaaatt ggacttaatg tgattcgcca atctgtattc ttttagcaag tatgttaaga
     5941 tgaaagtgat tggactatgg cacattcagg aggacgagcc atgcaagatt taataaagag
     6001 acatgtctta aacggcgaat ttgatgcagt gaaaaattta atgtctgcca ctgatttttt
     6061 agaatttgaa gaagcctata tttccagtgc atatgaaaat gaaagtgtca tgtactacac
     6121 gtgtttgttg tacatgatta aagaagcaga aacaactgaa atccacgact tagcttttct
     6181 attactcgta taccctttaa gtgacgttcc aggtgcaatc gaggccgcgt attatcatgc
     6241 cgaatcttct atagatttga cgaagggtaa agaggtgaag agcttgttac aaatgttatt
     6301 gttacatgca cttccggaac ctgtgatttc tgataaaaaa gctttcgaag tttcgaaaca
     6361 aattttaaaa cttgatccga gcaataaagt cgcgcgtaat gtattgaaag atacagctaa
     6421 acgtatggat caagtcgttg ttgactttga ccagttaagt cattataaag atgcataatt
     6481 tttgaataat aacgattcga tgtgatttaa gcattggatg gttttttgca ttgaggtaaa
     6541 acaaaagggg acagattctg cgcacctatt gctctgcttg ttcaaaaaat agggatacat
     6601 gagtgaagtg gttttgagaa ctgcgcaata cg
//
LOCUS       DANHOL010000123         6625 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.124, whole genome shotgun sequence.
ACCESSION   DANHOL010000123 DANHOL010000000
VERSION     DANHOL010000123.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 6625)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6625)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6625
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.124"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(373..1056)
                     /gene="radC"
                     /locus_tag="PTC08_001883"
     CDS             complement(373..1056)
                     /gene="radC"
                     /locus_tag="PTC08_001883"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadC"
                     /protein_id="HDK5683387.1"
                     /translation="MTRIQDLSSNEKPKERLIQFGSQALSNTELLAIIINTGSKGRSS
                     IQVASHILAQCQSLTALRKMSLVELEKFVGIGRNKATTLLAVFELSRRLAEDKKQYLS
                     DPIHSPSQIAERYYAKFKDYDQEHFVLLILNTKNQIVHEQTLFIGTLNSAIIHPREVF
                     KTALKWSANAIIVIHNHPSGDATPSEADIETTKRLVACGEAMGIELLDHIVIGEESYV
                     SIMSETNEA"
     gene            complement(1053..1769)
                     /locus_tag="PTC08_001884"
     CDS             complement(1053..1769)
                     /locus_tag="PTC08_001884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase"
                     /protein_id="HDK5683388.1"
                     /translation="MIVALFFVGSILMSFLLQFADHPSLSMRHCLQRSKCQTCQHELK
                     LLDLVPILSYCALKGRCRFCRQRIPISLFIGEVLGGCIIIYPLLLPVYIPLETFYVMA
                     LLLLTIAIVDIRTQLILHRFLCLISILLVALHPSFYIDVPHLLLWVTTFLIGCIQQNY
                     VGMGDIKLFLIIIFFFPVPFLLFFLELIFPIGCILLPISFMFNWIHQRRVPLAPAIFT
                     AFVTVSTIYPQLISFYGGFL"
     gene            complement(1966..3234)
                     /locus_tag="PTC08_001885"
     CDS             complement(1966..3234)
                     /locus_tag="PTC08_001885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional folylpolyglutamate
                     synthase/dihydrofolate synthase"
                     /protein_id="HDK5683389.1"
                     /translation="MNYLDSLYWIHERTKFGIKPGVKRMEWMLDKLGNPQQNIQAIHV
                     GGTNGKGSTVVYLREALLKNDYQVGTFTSPYIETFNERISLNGLPITNEDIVALVARV
                     KPVSEMMEEQTELGVATEFEIITTMMYLYFGELHPVDIVIVEAGLGVKNDSTNVIQPL
                     MSILTSIGLDHTDILGQTYLDIAKDKAAIIKPHTPIVYAVKNEEALKYFRDIAERLDA
                     KALEFDRDIFIKSEDDEFTYRYKDYELENLALHMVGEHQKENAALAITALIELYEQEK
                     IQLDFNKMIEGIEHAYWTGRIERVSKEPLIIIDGAHNKESVDALVDTIEKYYDVPKVD
                     VLFAAIEGKPIHHMLDAFQSIAKHIYVTGFDFPKALPKQTLYDEIEFGQKSMVDDYIS
                     FINNYDGDALLITGSLYFISEVKSKVDFNS"
     gene            complement(3246..5876)
                     /locus_tag="PTC08_001886"
     CDS             complement(3246..5876)
                     /locus_tag="PTC08_001886"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HDK5683390.1"
                     /translation="MEMKPKYNPQEVEAGRYQKWLDQELFKPSDHSDKPTYTIVIPPP
                     NVTGKLHLGHAWDTTLQDILTRMKRMQGYETLYLPGMDHAGIATQAKVEAKMREEGIS
                     RHDIGREKFLEKAWEWKEEYASFIRQQWAKLGLGLDYSRERFTLDSGLSQAVRKVFVD
                     MYNKGLIYRGERIINWDPAARTALSDIEVVHEDVNGKFYHFKYPFADGEGYMEIATTR
                     PETMLGDTAIVVNPDDERYQDVIGKTVILPVVGRELPIIADDYVDKEFGSGAMKVTPA
                     HDPNDFEIGNRHNLERIVVMDEAGRMNAEAGKYEGMDRFECRKQLVKDLLEEGLVIKI
                     DDHVHSVGHSERSGAVVEPYLSTQWFVKMAPLAEQALNNQKTNGRIEFVPPRFEKTFN
                     RWMEEIRDWTISRQLWWGHQIPAWYHNETGELYVGEEAPVDIENWTQDEDVLDTWFSS
                     ALWPFSTLGWPNEDAADYQRFYPTNVLVTGYDIIFFWVARMIFQGLEFTGQKPFNDVL
                     LHGLVRAEDGRKMSKSLGNGVDPMDVIDQYGADSLRYFLATGSSPGHDLRYSTEKVES
                     VWNFINKIWNAARFSLMNIGDSFKFEDINLSSDLSVADQWILTRLNETIDTVTQLSDK
                     YEFGEVGRVLYNFIWDEFCDWYIEMSKIPMNGDDEVQKNVTRSVLSYALDRIMRLLHP
                     FMPFVTEHIWQNLPHEGESIVTSAWPTVDASLVFEESKDVMEQLVEIIKAVRQSRLEV
                     NTPLSKEIPIKIQAKNETIQQLLKTNQHYLERFCNPSTLEIETQIDIPDKAMTTVVAA
                     GEVILPIEGLIDMDKELERLEKDLQKWQKELDRVNKKLSNENFVNKAPEHVINEEKEK
                     QVKYQEKYDGVKARIEQLKA"
     misc_binding    complement(5915..6137)
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00230"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="T-box leader; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="tRNA"
                     /db_xref="RFAM:RF00230"
     gene            6196..>6625
                     /locus_tag="PTC08_001887"
     CDS             6196..>6625
                     /locus_tag="PTC08_001887"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase I"
                     /protein_id="HDK5683391.1"
                     /translation="MNPCAFGTKDPLYLDYHDHCWGKPLYDSRALFELLALESQHAGL
                     SWLTILKKKEAYQQAFHHFDPHQIAQMRDEDIDALMAFPNIVHHRPKLEAIVAQAKGY
                     IQIEQDYDSFSSFLWSFVDGAPIDFKYQSVEERITVNDTAI"
BASE COUNT         2031 a         1382 c         1089 g         2123 t
ORIGIN      
        1 taatgatttt acttgccgta gttcttttta gaatcagtgt ttcaatcatt ggctttttaa
       61 ttagactcgg cttgatgata ctagttgtct atcttggcta tcaattgttc ttatggtttg
      121 tgagctatat ttgatgacga gaagataacg cttcataaag gggattgggg catgaatatt
      181 taaaaaatga gtcgtattga tttgcgattt gaatttcata attggcatta gatggctccc
      241 attttaggag aaaatctctc aggcgtttca acactttgag cgcttcaata tcaaaaaaaa
      301 cggaaatcaa taagaacgac tatttgatga tgaagcaatg ctaaaatttt cataccccgc
      361 ccctttctat ttttacgctt catttgtttc actcataatc gaaacatacg attcttcccc
      421 aatcacaata tgatcaagta actcaatccc cattgcctct ccacatgcaa ccaaccgttt
      481 tgtcgtttca atgtccgctt ctgatggtgt tgcgtcccct gaaggatggt tatgaatcac
      541 aataatcgca ttagcagacc atttcaaagc tgttttaaac acttctctag gatgtatgat
      601 ggcactattt aacgttccaa taaaaagcgt ttgttcatga acaatttgat ttttcgtatt
      661 taagatgagt aaaacaaaat gttcttgatc ataatcctta aattttgcat aatagcgttc
      721 tgcaatttgg ctcggagaat gaataggatc agataggtat tgctttttat cctctgctaa
      781 acgtcgtgac aattcgaata cagcgagcaa cgttgtcgcc ttattacgcc ctattccgac
      841 aaacttttct aattcaacta atgacatttt tctaagcgct gttaatgact gacattgcgc
      901 taaaatatgt gaagcaactt gtatgctaga acgtccttta ctcccggtat tgataataat
      961 tgcaagtaat tctgtgttcg ataatgcctg actaccaaat tgaattaggc gctcttttgg
     1021 tttctcattg gatgataaat cttgaatgcg tgtcataaaa atcctccata aaatgaaatc
     1081 aactgtgggt atatcgtaga aacggtaaca aatgcggtga aaatagcagg cgcaagtggt
     1141 actcggcgtt ggtgtatcca attaaacata aatgaaatcg gtaatagtat acagcctatt
     1201 ggaaaaatga gttctaaaaa gaagagtaaa aacggtacag gaaaaaagaa aatgatgata
     1261 agaaataatt taatatcgcc catacccaca taattttgtt gaatgcaccc tatcaaaaaa
     1321 gtagtaaccc aaagtaacag gtgtggcaca tctatataga aagacggatg aagtgcgact
     1381 aacaaaatgg atattaaaca aaggaatctg tgaagaatca actgtgtacg tatatcaaca
     1441 attgcaattg tgagtaatag taacgccatg acataaaacg tctcaagcgg aatatataca
     1501 ggtagtaata gcggataaat aataatgcac ccccctaaaa cttcgcctat aaaaagggat
     1561 attggaatgc gttgtcgaca aaaacggcac cttcccttta acgcacagta acttaggata
     1621 ggtactaaat cgagcagctt taactcatgc tgacatgttt gacactttga tctttgtaag
     1681 caatgtcgca tgcttaatga aggatgatca gcgaattgca gtaaaaaact cattaaaata
     1741 ctgcctacaa aaaataaggc gacgattatt ctagacacct cctcaacacc gtcgaaactt
     1801 taattcacga cagcaacatt tcattgaatg cacttattat atgcgcatcc atatgaagag
     1861 tcaaatcgcc aaaaaacact ttttaagtcg aaaaaaacgt atatgataaa aaaccacctt
     1921 atatgtatct cgatttttcg gaatacatac aaagtggttc gatttttatg aattaaagtc
     1981 aactttagat ttcacttcac tgatgaaata aagactacct gtaatgagca atgcatcacc
     2041 atcgtagttg tttataaatg agatgtaatc atcgaccatt gatttttgtc caaattcaat
     2101 ttcatcatat aacgtttgct taggaagtgc ttttggaaaa tcaaatcctg tcacataaat
     2161 atgctttgcg atactttgga aagcatctaa catatgatga atcggcttcc cctcaatagc
     2221 tgcaaataag acgtctactt tcggtacatc gtaatacttc tcaattgtgt ccactaatgc
     2281 gtcaacactt tctttattat gtgcaccgtc aattatgata agcggttctt tagagacacg
     2341 ttcaatacga cctgtccaat acgcatgttc aatcccttca atcattttgt tgaagtctaa
     2401 ttgaattttt tcttgctcat acaactcaat taacgcagta attgcaagtg ctgcattttc
     2461 cttttggtgt tcgccgacca tgtgtaatgc taagttctct aattcgtaat ctttataacg
     2521 atatgtaaat tcatcgtctt ctgatttgat aaaaatatca cgatcgaatt ctaaagcttt
     2581 cgcatctaat cgttcagcga tatctctaaa atacttcaat gcttcttcat ttttaacagc
     2641 gtaaacaatt ggcgtatgcg gtttaataat tgccgcttta tctttagcaa tgtctagata
     2701 cgtttgaccg agaatgtccg tatgatctaa accgatactc gtcaaaatac tcatcaatgg
     2761 ctgtatcaca tttgtagaat catttttgac acctagacct gcctcaacga taacgatatc
     2821 aactggatga agctcgccga aatagagata catcattgtt gtaatgatct caaattcggt
     2881 cgcaactcct aactcagttt gttcttccat catttcactg acaggtttca cacgagccac
     2941 tagcgctact atatcttcgt ttgtaattgg taaaccattt aaactgattc gttcattaaa
     3001 tgtttcgata tatggagacg taaaagtacc cacttgataa tcatttttga gtaaagcttc
     3061 acgtaaataa acaaccgtag aacctttacc attcgtccca ccgacatgaa tagcttggat
     3121 attctgttgt ggattaccaa gtttatcgag catccattcc atacgtttta cacctggttt
     3181 aatgccgaat tttgttcttt cgtgtatcca atataaactg tctagataat tcataactaa
     3241 gactcctacg cttttaattg ttcaattctc gccttgacac catcatattt ctcttgatat
     3301 ttcacttgct tttctttttc ttcattaatg acgtgctcag gtgctttatt cacaaaattc
     3361 tcgtttgata atttcttatt aacacgatct aactcttttt gccatttttg taaatctttc
     3421 tctagacgtt ctaattcctt gtccatatca atcaaacctt caataggtaa aatgacttca
     3481 ccagcagcaa cgactgttgt catcgcttta tcaggaatgt cgatttgtgt ttctatttca
     3541 agcgtacttg gattacagaa acgttccaaa taatgttgat tcgtcttcaa taattgttgg
     3601 atcgtttcat ttttagcttg aattttaatt ggaatttctt tagatagtgg tgtattcact
     3661 tctaaacgcg attgacgtac tgctttaatg atttcaacta attgttccat cacatcttta
     3721 ctttcttcaa acacgagcga tgcatccact gttggccatg cacttgtcac gatagattca
     3781 ccttcatgcg gtaaattttg ccaaatgtgt tcagtgacaa acggcataaa tggatgtaat
     3841 agacgcataa tacgatctaa agcataacta agtacagagc gtgtaacgtt tttctgaacc
     3901 tcatcgtcac cgttcattgg aattttactc atttcaatgt accagtcgca gaactcatcc
     3961 caaataaaat tatacaatac gcgtcccact tcgccaaatt catacttgtc gctcagctgt
     4021 gtgacagtgt caatcgtttc attcaaacgt gttaatatcc attgatctgc aactgataaa
     4081 tcgctcgata aattaatatc ttcaaatttg aatgagtcac caatattcat caaactaaaa
     4141 cgcgcggcat tccaaatttt attaataaag ttccaaacag actctacttt ttctgttgaa
     4201 taacgtaaat cgtgacctgg tgaagagcct gttgccaaga aataacgtaa gctgtcggca
     4261 ccatattgat caatgacgtc cattgggtcc acaccattac ctaatgattt actcatttta
     4321 cgaccatctt cagcacggac taaaccatgt aataatacgt cgttaaatgg tttttgacct
     4381 gtgaattcta aaccttggaa aatcatacgc gcaacccaga agaaaataat gtcgtagcct
     4441 gtcactaaca cattcgttgg gtaaaaacgt tgatagtctg ctgcgtcttc atttggccaa
     4501 ccaagagttg aaaacggcca taatgcacta gagaaccacg tatctagcac gtcttcatct
     4561 tgtgtccaat tctcaatatc tacaggtgct tcttcgccta cataaagctc tccagtttca
     4621 ttatggtacc acgctggaat ttgatgcccc caccaaagct gtctcgaaat tgtccagtca
     4681 cggatttctt ccatccaacg attaaatgtc ttttcaaaac gcggcggtac aaattcgatg
     4741 cggccatttg ttttttgatt atttaaagct tgttctgcta gtggagccat tttaacgaac
     4801 cattgtgttg ataagtatgg ctcaacaaca gcgcccgaac gttcagagtg gcctaccgaa
     4861 tggacatggt catcgatttt aataactaaa ccttcttcta acaaatcttt aacgagctgt
     4921 ttacggcatt caaaacgatc catgccttca tatttgcccg cttcagcatt catgcgccct
     4981 gcttcatcca tgacaacaat acgttctaaa ttatgacgat tccctatttc aaagtcattc
     5041 gggtcatgtg caggtgttac tttcattgca ccactaccaa attctttatc gacatagtca
     5101 tctgcaataa ttggtaattc acgaccaacg acaggtaaaa tcacagtctt accgataaca
     5161 tcttggtaac gttcatcatc tggattcacg acaatcgccg tatctcctaa catcgtttca
     5221 ggacgtgtcg tagcaatttc catgtagcct tcaccgtcag caaacggata tttaaaatga
     5281 taaaacttgc cattgacgtc ttcgtgaaca acttcaatat cagaaagtgc ggttctcgca
     5341 gctggatccc agttaatgat acgttcgcca cgataaatca atcctttgtt atacatatca
     5401 acaaagactt tacggacagc ttgacttaat cctgaatcca atgtaaagcg ctctctagaa
     5461 tagtctaaac ctagacctaa ctttgcccat tgttggcgaa taaatgacgc atattcttct
     5521 ttccattccc atgccttttc aaggaacttt tcacgaccaa tatcatgacg agagatacct
     5581 tcttctctca ttttcgcttc tactttcgct tgagttgcga tacctgcatg gtccatgcct
     5641 ggtaagtaaa gcgtttcata gccttgcata cgtttcatac gtgttaaaat gtcttgtaat
     5701 gtcgtatccc acgcgtgacc taaatgcaac tttcctgtca cattcggtgg tggaatcaca
     5761 atagtatatg taggtttatc tgaatgatca cttggtttaa aaagttcttg gtctagccat
     5821 ttttgatatc gacccgcttc aacttcttgc gggttatact tcggtttcat ttccattaaa
     5881 aatccctcca ttaaaataaa aaaacacctg tccaaaatag gacggatgtt ccgcggtacc
     5941 acctatattc aatagtgcaa acaaatctct acactactgc tctcttatga ttaacgctca
     6001 tgacacgctt taacctactc ttagttcaat taaagttcaa aacgggctac cttcagttat
     6061 aacttttatg catttccagc tcccatgcac tctctataaa aagcgaataa catactcttc
     6121 cctaacacta tttttaattt cattcttata gtatactgaa acgacaatga agtcaataca
     6181 aggaggaatg aaaacgtgaa cccatgtgca tttggtacaa aagatccact ttatctcgat
     6241 tatcacgatc actgctgggg caaaccactc tatgattcac gcgctttatt tgagttgtta
     6301 gccttagaat cacaacatgc gggactttct tggttaacga ttttaaaaaa gaaagaagcc
     6361 tatcaacaag catttcatca ttttgatccc catcaaattg cacaaatgcg tgatgaagat
     6421 attgatgcat taatggcatt tccaaatatc gtacatcatc gtccaaaatt agaagccatc
     6481 gtcgcacaag cgaaaggtta tattcaaatt gaacaagatt acgatagttt cagttcgttt
     6541 ttatggtcat ttgtcgatgg ggcaccgatt gattttaaat atcaatctgt agaagaacgc
     6601 atcaccgtca atgatacagc tataa
//
LOCUS       DANHOL010000124         6568 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.125, whole genome shotgun sequence.
ACCESSION   DANHOL010000124 DANHOL010000000
VERSION     DANHOL010000124.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 6568)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6568)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6568
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.125"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            185..1360
                     /locus_tag="PTC08_001888"
     CDS             185..1360
                     /locus_tag="PTC08_001888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011303473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diglucosyl diacylglycerol synthase"
                     /protein_id="HDK5683392.1"
                     /translation="MITEKKKILIITGSFGNGHIQVTNSIVEQLNQMNLDNLTVIQRD
                     LFLEAHPIMTTITKKWYINSFKYFRRMYKAFYYSRPDQLDKCFYKYYGLNKLLNLLLK
                     EKPDLILVTFPTPVMSVLTEQFNMNIPIATVMTDYRMHKNWITPNSERYYLATHDLKQ
                     EFEAVGIPSDRIKVTGIPISEKFEEPIDRVAWLRQHHLDPEAQTILMSAGAFGVSKGF
                     DEMIQRILDESQNAQVVMICGHSKELKRQLSASFKDNPNVLILGYTTHMNEWMAASHL
                     MITKPGGITISEALIRKIPMIFLNPAPGQELENAIYFEQKGFGKIANTPTEAIDIVTH
                     LTRHSNEIDQMIHNMSEARQPHATKRLCQDLLDLLYNASTFETVYGKVPLYAKLLVK"
     gene            1338..2522
                     /locus_tag="PTC08_001889"
     CDS             1338..2522
                     /locus_tag="PTC08_001889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016424670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDK5683393.1"
                     /translation="MQNYSSNKIAMRNFYILLVILFLMEFARGMYVLSYLPLLPTATT
                     IAVSITSIAISIHFIADSITNFFVGFVLKRFGAKVVLTSGFFLALVSLFLIIWMPTSP
                     VTLILSAVMLGVAVCPIWVIMLASVDERIRGTQMGYVYFAWLAGMLAGMIGMNLIFKA
                     HPTHFNFLMALCVAIAFVLYYFVKVKLTDYNTKNVKQQLKQIVSVSQRHLVLFPGILL
                     QGIAISALIPVLPQYAVDIVGVSTVEYTVAIVIGGIGCTISMLFLSKMIDAYSTRFMY
                     SVIFAGFIIYGLAIFALTLIQQIVIVWIIALFIGLLYGLLLPTWNTFMAQFIHPSEQE
                     ETWGVINSIQGFGAMLGPLFGGPISQFMGSPIFTFYFAALLIFFLALFYGVYFVKQRR
                     TY"
     gene            2928..4415
                     /locus_tag="PTC08_001890"
     CDS             2928..4415
                     /locus_tag="PTC08_001890"
                     /EC_number="3.1.6.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arylsulfatase"
                     /protein_id="HDK5683394.1"
                     /translation="MDTQQPNIILICVDQLRFDTLGHHHHPVVSTPHLDMLASQGYHF
                     SQMYTAVPSCIASRAALMTGLSQAHHGRVGYEDNVDWAYDQFMADSFRNAGYQTEAVG
                     KLHVTPERKRIGFDHVMLHDGYLHEARKYTAPYGQNFEYADDYLMWLKEQLGHHADLM
                     DDGIEPNSWVARPWMYGEQFHPTNWVVHEGIRFLQRRDPEKPFFLNLSFTRPHPPLNP
                     PQYYFDMYMNKIDEFPVIEMGAWKDIEEPLPFSITAKKGHYHKDELDRMRAGYYGNIT
                     HIDHQIGRFLIALNEQRIAKNTIILFVSDHGDQLGEHNLFRKAYPYQGSIHIPMMIYD
                     KGNLLKGKHRDLHQIGELRDIYPTLLDLANIDIPKNIDGVSLKPALYDDTFVTREYLH
                     GEHSFGKDSNQFIMNDAWKYTWYPVRGIEQLFHYQGDPHEKHNLIHEAEYQAIKNELK
                     QQLIKALTDREEGFVKNGELQILPETKPTLDHLQARNKSAQRQRQ"
     gene            4520..5416
                     /locus_tag="PTC08_001891"
     CDS             4520..5416
                     /locus_tag="PTC08_001891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HDK5683395.1"
                     /translation="MDMLWWQILLLTIYAGVQILDNLSFGFLAQPVMAGLISGLVMGD
                     VTTGLIIGGGMQLTILGVGTFGGASHIDANSGTVLAVAFSVAIGMNPEQALATLGVPV
                     ASLMIQTDILARFTNTFFAHRIDSKIEKMDYRGIERNYLYGAIPWSLSRAVPVFLALT
                     FGSNIVKPVVNYLNTDLKWLGDGLTLAGALLPAVGFAILLKYLPLKRHYPYFILGFII
                     TALFVTIFGGLTTLGTSVAGLDKNFTAAMGPLPMLAVALIGFSLAAMAYQRSTQTAPS
                     YGGQQRQQSNVDDEGEIEDDEL"
     gene            5403..6296
                     /locus_tag="PTC08_001892"
     CDS             5403..6296
                     /locus_tag="PTC08_001892"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system mannose/fructose/sorbose family
                     transporter subunit IID"
                     /protein_id="HDK5683396.1"
                     /translation="MTNSKTKHSKEPLALNTPFEDPTLTGSPPKEPYQLTKKDFRQIN
                     LRSLLFFQWGWNYERMQGSGYLFTILPQLRKIYGDNSPELKEMMRTHAQFFNTSNYFN
                     TIVTGIDIAMEENEGLKAKESVKGIKVGLMGPFAAVGDAIFGSLIPTIFGAIAANMAT
                     DGNPFGILLWFFAVLFIIGFRWKQLPFAYKEGISLVTTMQHRLESLTNAATLMGVFMV
                     GALVATMIRVKFAFEPTLGDVTINFSENADMILPRLVPLAVVFSVYWLLGRKNMNSTR
                     AIFIVIIVAILFSSLGILQKL"
BASE COUNT         2014 a         1212 c         1268 g         2074 t
ORIGIN      
        1 ttaccgtaaa atatgggtag catatacaca ttttctcatc ttttacaacg aggtgtacag
       61 ttaaaatgat tttaacattg ttatcgtttt gtaagaaatg ccattaactt ttcacaagac
      121 gtacaaattg cggtacacta gcatagaacc agttaaagtc tcaatatctc ggagggtggc
      181 tttcatgatc actgaaaaga aaaaaatatt gattatcacc ggttcattcg gcaatggcca
      241 tattcaagtg acgaacagta ttgttgaaca gttgaatcaa atgaatcttg acaatctgac
      301 agtcatacaa cgtgatttgt ttttagaagc acatccgatt atgacaacga ttactaaaaa
      361 gtggtacatc aatagcttta agtatttccg ccgtatgtat aaagcatttt attatagtcg
      421 ccctgaccaa ttagataagt gcttctataa atattacggt ttaaataaat tactcaactt
      481 actattaaaa gaaaagccag atttgatttt ggtaactttc ccgacaccag tcatgtctgt
      541 attaaccgag cagtttaata tgaacattcc gattgcgacg gtcatgacag attatcgtat
      601 gcacaaaaac tggattacac cgaattctga gcgctattat ttagccactc atgatttgaa
      661 gcaagaattt gaagcggtgg gcattccaag tgatcgtatt aaagtaacag gtatccctat
      721 ttctgaaaaa tttgaagaac cgattgatcg tgtagcttgg ttacgtcaac atcaccttga
      781 ccccgaagcg caaaccattt taatgtcggc aggtgcgttt ggtgtgtcta aaggatttga
      841 cgaaatgatt caacgtatcc ttgatgaaag tcagaatgcc caagtcgtca tgatatgcgg
      901 tcatagcaaa gaactgaaac gtcaattgtc tgcttcgttt aaagacaatc ctaacgtgct
      961 tattttaggt tatacgaccc atatgaatga atggatggcg gcaagtcatt taatgattac
     1021 gaaaccgggt ggcattacca tttcagaagc attaatccga aaaataccaa tgattttctt
     1081 gaatcccgcg ccaggtcaag aactagaaaa cgcgatctat tttgaacaaa aaggcttcgg
     1141 gaaaattgcg aacacaccga cagaggcgat tgatattgta acgcatttaa cacgtcactc
     1201 aaacgaaatt gaccaaatga tacacaatat gagtgaagcc cgtcaaccac atgcgacgaa
     1261 acgtttatgc caagacttgt tagacttact ttacaatgct tcaacattcg aaactgtata
     1321 tggaaaggtg cctttatatg caaaactact cgtcaaataa gatagctatg cggaacttct
     1381 atatcctatt agtcatttta tttctgatgg aatttgcaag aggaatgtat gtattaagtt
     1441 atttaccttt attaccaacc gcaacaacca ttgctgttag tattacttca attgcaattt
     1501 ccatacattt tatcgctgac tcaataacaa actttttcgt tggctttgtg ttgaaacgtt
     1561 ttggcgctaa agttgtactc acttcaggct tttttctcgc tttagtgagt ctctttttaa
     1621 ttatttggat gccgacctcg ccggtgacgc ttattttaag tgctgtcatg ctcggtgttg
     1681 ccgtctgtcc aatatgggtt atcatgctcg ctagtgtaga tgaaagaata cgtggtactc
     1741 agatgggtta cgtttatttt gcatggcttg cagggatgtt agccggtatg attggaatga
     1801 acttaatttt caaagctcat ccgacacatt ttaacttttt gatggccctt tgtgtagcga
     1861 ttgcttttgt gctttattat tttgttaaag tgaagttaac agattataat acgaaaaatg
     1921 tgaaacaaca gctcaaacaa attgtgagtg tatcacagcg tcaccttgtg ctctttccag
     1981 gaattttact gcaagggatt gcgattagcg cactcattcc tgtcttgcct caatatgccg
     2041 tggatatcgt tggtgtaagt accgttgaat atacggtagc gattgtcatt ggcggtatcg
     2101 gttgtacgat ttcgatgctg tttttatcta aaatgatcga tgcctattct acacgtttta
     2161 tgtatagtgt aattttcgcg ggttttatca tttatggctt ggcaattttc gcattaacat
     2221 tgattcagca aattgtcatt gtttggatta tcgcattatt tatcggctta ctgtacggtt
     2281 tacttttacc gacatggaat acatttatgg cacaattcat tcatccgagt gaacaagaag
     2341 aaacttgggg tgtgatcaat agtatccaag gttttggtgc catgcttgga ccattattcg
     2401 ggggaccaat atctcaattt atgggcagcc ctatttttac attttatttt gcggcactcc
     2461 ttatcttttt cttagctctg ttttatggcg tttatttcgt caaacaacga cggacatatt
     2521 aaaaatatta acaacgactt tgaagcaaac acaaaacttg tttcaaagtc gttgttgttt
     2581 tgtgtttgat aattgctctt ttcaatactt tcttaacttc ccaaatttaa gtccgcgcta
     2641 atccaccttt ctttcgtcta ctacgctgtg caactcaaca aaatcattta atagcaattg
     2701 cgttcaaaca gtttacaaaa tatataagaa cttagagaaa tcaagcaata ttgacaaaaa
     2761 ttttcaaaac ttgttataac cactcatgac aagctgaaat gccctaaaat taagtaaacg
     2821 cttacatcga tagccctata attcacttat tctccttaaa attggtcata ttgtcaatac
     2881 gtgccattag tgctattttt aaattaaata gagaaaggag agattgcatg gatacacaac
     2941 aaccgaatat catcctcatt tgtgtggatc aactgcgctt tgacacgtta ggtcatcatc
     3001 atcatcctgt cgtttcaaca cctcatttgg atatgttggc atctcaaggt tatcatttta
     3061 gtcaaatgta tactgccgtg ccaagttgta tcgcaagtcg tgcagcattg atgactggtt
     3121 tatcacaagc ccatcacggt cgagtcggtt atgaagataa tgtcgattgg gcctatgatc
     3181 aatttatggc tgacagtttt agaaatgcag gttatcaaac agaagcagtg ggcaagttgc
     3241 acgtgacacc tgaacgaaaa cgtattggct tcgaccatgt catgttacat gatggttatc
     3301 ttcatgaagc acgtaagtac actgcaccat atggtcaaaa ttttgaatat gctgacgact
     3361 atttaatgtg gttgaaagag caattaggtc atcacgcaga cttaatggat gatggcatcg
     3421 aaccaaattc atgggttgct cgtccgtgga tgtatggaga acagtttcat cctacaaact
     3481 gggttgtcca tgaaggtata cgttttttac aaagaagaga ccccgaaaaa ccttttttct
     3541 taaatctttc atttacacgc cctcacccac cactcaatcc gcctcaatac tattttgata
     3601 tgtatatgaa taaaatagat gaatttccag tgattgagat gggtgcctgg aaagatatag
     3661 aggagccgtt accttttagt attacagcta aaaaaggaca ttatcataaa gacgaattgg
     3721 atcgtatgcg tgcaggttat tacggcaata tcacccatat cgatcaccaa atcggtcgtt
     3781 tccttatcgc gctaaatgaa caacgaatcg cgaaaaatac aatcatttta tttgtatcag
     3841 atcatggcga tcaattaggc gaacacaatt tattcagaaa agcatatccg taccaaggga
     3901 gcattcacat tccgatgatg atttatgata aaggcaactt attaaaagga aagcatcgcg
     3961 atttacatca aattggagaa ttaagagata tttatccaac tttattagat ttggccaata
     4021 tcgacattcc caaaaacatt gatggtgtga gcttaaaacc tgccctttat gatgatactt
     4081 ttgtgacacg tgaatattta catggtgaac acagtttcgg taaagattcg aaccaattta
     4141 tcatgaatga tgcttggaag tacacttggt atccagtaag aggcattgaa caattgtttc
     4201 attatcaagg tgacccacat gaaaaacata acttaattca tgaagctgaa tatcaagcga
     4261 ttaaaaatga attaaaacaa caattgatta aagcattgac ggatagagaa gaaggctttg
     4321 tgaaaaatgg tgagctacag attttgcctg aaacaaaacc gacactcgat catttacaag
     4381 cgcgaaacaa atctgcacag cgtcaacgtc aataattcaa tcaaaatgac actgttttgt
     4441 tctaaagcta tatgtactgc acatatagct tcagtttaaa taaaatatgt aagcgttaac
     4501 ataaagggag ttgaaaatta tggatatgct atggtggcaa attttgcttt taacaatcta
     4561 tgcaggtgtc caaatcctag ataacttatc atttgggttt ttagcacaac ctgttatggc
     4621 cggtcttatc agtggtctcg ttatggggga tgtcactaca ggccttatca tcggcggcgg
     4681 tatgcagtta acaatcctcg gtgttgggac attcggtggt gcgtctcata tcgatgccaa
     4741 ctcaggtaca gtattagcgg tagccttttc agttgcgatt ggtatgaacc cagaacaagc
     4801 gttagcaact ttaggggtac cagtagcgag tttaatgatt caaacagata ttttagcacg
     4861 tttcactaac acattttttg cacatcgtat tgatagcaaa attgaaaaaa tggactatcg
     4921 cggcattgag cgtaactact tatacggtgc gattccgtgg tcattatcac gcgcggttcc
     4981 tgtgttttta gctttgactt tcggtagcaa tatcgttaaa ccggtcgtga attacttgaa
     5041 cacagactta aaatggttag gtgatggctt aacattagca ggtgcccttt taccagctgt
     5101 tggtttcgca atcttattaa aatacttacc attaaaacgt cattacccat actttattct
     5161 tggtttcatc attactgcat tattcgttac gatttttggt ggtttaacaa ctttaggtac
     5221 ttcagttgct gggttagaca aaaacttcac agctgcaatg ggtccccttc caatgcttgc
     5281 agttgcttta atcggtttca gtttagcagc aatggcttac caacgtagca cgcaaacagc
     5341 accaagctat gggggtcaac aacgtcaaca gtcaaatgta gatgacgagg gggaaataga
     5401 agatgacgaa ctctaaaacg aaacattcaa aagaaccttt agccttaaac actccatttg
     5461 aagatccaac attaacagga agtcccccta aagaaccata tcaactcacg aagaaagact
     5521 ttcgtcaaat caacttacgt agcttactgt tcttccaatg gggttggaac tacgagcgta
     5581 tgcaaggctc tggttactta tttacgattt taccgcaatt acgtaaaatt tatggtgata
     5641 actcacctga attaaaagaa atgatgcgta cacatgcgca attcttcaat acaagtaact
     5701 actttaatac tattgtgaca ggtatcgata tcgcaatgga agaaaatgaa ggccttaaag
     5761 caaaagagtc tgtaaaaggg attaaagttg gtttaatggg accattcgcg gcagttgggg
     5821 atgccatttt cggttcatta attccaacga ttttcggtgc catcgcagca aatatggcaa
     5881 cagacggtaa tccattcggt attttacttt ggttcttcgc agttttattc atcattggct
     5941 tcagatggaa acaattgcca ttcgcttata aagaagggat ttcactcgtt acaacgatgc
     6001 aacaccgttt agaatcatta acaaatgcag caacattaat gggtgtcttt atggtcgggg
     6061 ccctcgtggc gaccatgatt cgtgtgaaat ttgcatttga gccaacactt ggtgatgtca
     6121 ctataaattt cagtgaaaat gcagatatga ttttaccgcg tcttgtacct ttagcagtcg
     6181 ttttcagtgt ttattggtta ttaggtcgta aaaacatgaa ttcaacgcgt gcgattttca
     6241 tcgttattat cgtagctatt cttttctcaa gcttaggcat tttacaaaag ttataggaat
     6301 aataaaattc ccgcaacaac ggtcaatttt agccgttatt gtgggaattt tttgggttat
     6361 atatttttaa cggttagtga gaggttcact gaccgttatt ttaattattg atattaaaaa
     6421 gttctcaatc gttagtggtg tgtaatatag aaagattcct ttcgtcgtaa cagaaaagct
     6481 ctgcgtttta acgatagcaa ggatattagc aaagactgtc ataaaaaagt atgttgcttt
     6541 aataaaacag agcttagcct aatgatta
//
LOCUS       DANHOL010000125         6517 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.126, whole genome shotgun sequence.
ACCESSION   DANHOL010000125 DANHOL010000000
VERSION     DANHOL010000125.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 6517)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6517)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6517
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.126"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            38..898
                     /locus_tag="PTC08_001893"
     CDS             38..898
                     /locus_tag="PTC08_001893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HDK5683397.1"
                     /translation="MQLLWKMFKKNQFEANIDECGIEIGTPHGGYQYEVTKPAVLHIV
                     MSGTGTLTYNQKKYTLKPGDLFLLCRGMNVHYESTLDEPWTYYWVGFSGKLVFDYLNR
                     TSLYETRVIQNQPTNTIRQIIYRMCQRSIEYATENSDDIQHMRDLYELLYELHQHFPK
                     PFHVVKNERYSNVREAIRYINDNYMHAISINDVAKHVNVSRSYLYKMFKKHIDQSPQH
                     YLIHIRMYHASQLFKETDLQSQEIADRVGYKDPLLFSRAFKKHFGVTATQYREEQQLR
                     IESTLDNQKR"
     gene            1070..2281
                     /gene="gltS"
                     /locus_tag="PTC08_001894"
     CDS             1070..2281
                     /gene="gltS"
                     /locus_tag="PTC08_001894"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/glutamate symporter"
                     /protein_id="HDK5683398.1"
                     /translation="MLELNSITTLFLACLLLIVGQAIVNKVEIFNRLSIPSPVIGGLI
                     FAIISAILTSTGVLHIKIDGKFFQDFFMLAFFTTIGLGASFKLLKLGGKVLIVYWVLC
                     GVLATFQNVIGVSMAKVLNIDPLLGLTAGAMSMEGGHGNAAAYGQTIQNYGIDSAVTA
                     ALAAATLGLVAGGLLGGPVVRYLIKKHDLTPSNTETIQKDYSNVELNRRLHKNFTVNE
                     VFFIQATVILFCMGLGTYLGQLFSDWSGINIPLYVASMFIAVIIRNISEFANLNLIDL
                     KLTNQIGDISLSIFLSIALMSIKLTEVYNLALPLIVIVICQIIFVALFSIFIVFRLLG
                     KNYDAAVMIGGFIGHGLGATPNAMANLDAITKKFGNSPRAYLVVPIVGAFLVDLLGVP
                     IITTFINIFKP"
     gene            complement(2309..3514)
                     /locus_tag="PTC08_001895"
     CDS             complement(2309..3514)
                     /locus_tag="PTC08_001895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HDK5683399.1"
                     /translation="MGKIPVTVLSGYLGSGKTTLLNHILNNREGRRIAVIVNDMSEVN
                     IDKDLVAEGGGLSRTDEKLVELSNGCICCTLRDDLLKEVERIVKRGGIDQIVIESTGI
                     SEPVPVAQTFSYVDEALGIDLTEICRLDTMVTVVDANRFIKDYQSGDMLLDRDQAVGE
                     DDERTIADLLIDQIEFCDVLILNKIDLVSEEEANRLEAMLRKLQPTAKLIRAVNAQVN
                     IDEVLETGRFNFEAASQSAGWLQELEAGGHATHTPETEEYGISSFVYRRRLPFHAERF
                     NAFLENMSESIVRAKGIAWLAQYNNVACLVSQAGTAVDIHPVTFWVASMPKAERAAIL
                     QERPDVRADWDPEYGDRHTQLVMIGIDLDEAAITAQLDACLLNSQEIDADWSQFSEPY
                     GWEIQRQEA"
     gene            complement(3688..4719)
                     /locus_tag="PTC08_001896"
     CDS             complement(3688..4719)
                     /locus_tag="PTC08_001896"
                     /EC_number="5.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 2 isopentenyl-diphosphate Delta-isomerase"
                     /protein_id="HDK5683400.1"
                     /translation="MTNKREQRKNEHVRLALAQSDTLQSDFDRIQFVHHAIPEMNVDE
                     VTLLPNFKALHMSHVLYINAMTGGSEWTVKTNEQLAQVAKATQIPMAVGSMHAALKNP
                     AVRHSYTVAREQYPEGQIWANVNADVTLEEAQAAIEMIHANALQIHVNAPQELVMPEG
                     NRQFKHWLMRISEIIKGVEVPVIVKEVGFGMSYDTIQQLIDVGVSYVDISGHGGTNFI
                     SIENERRQFKDMGYLKDWGQSTVVSLLEARNLSSRVHVLASGGIRHPLDAIKALRLGA
                     EAVGMSRPILKMLHEEGVEATIEYVEDFKTQMAYIMTLLNAKNITELRQAAIVFDPHL
                     KNWIQQRQL"
     gene            4897..5373
                     /locus_tag="PTC08_001897"
     CDS             4897..5373
                     /locus_tag="PTC08_001897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioesterase family protein"
                     /protein_id="HDK5683401.1"
                     /translation="MFNYPFYDTYRVENDWIDRNGHMNDAVYARLFSLAIDHFHDAIG
                     LTTAERDRRNYTVFTLETHITYLKELKHDTPFHIKVHIYDYDVKRTHFFLELIHQETE
                     TVMATAETMMMGMDRKTERPAVFPDDIFHAIQHYANSQGTMQWPKQLGHRIGIPRA"
     gene            complement(5432..6463)
                     /locus_tag="PTC08_001898"
     CDS             complement(5432..6463)
                     /locus_tag="PTC08_001898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000364852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HDK5683402.1"
                     /translation="MDLLIGTAFLVLVLVIFTLFTYKAPNGMRAMGALANAAIATFLV
                     EAFNKYVGGRVFHNDFLEQVGAAAGDLGGVAAAGLTALAIGVSPVYALVIAAACGGMD
                     LLPGFFAGYLIGYLMKYTEKYVPDGVDLIVAVLIVAPLSRAIAMLLTPVVNNTLVRIG
                     DIIQSSTDTSPVIMGIILGGIITVVGTAPLSSMALTALLGLTGVPMAIGAMAAFSSAF
                     MNGTLFHRLKLGDRKATISVSIEPLSQADIVSANPIPIYITNFFGGATAGLVIALSGL
                     INDATGTATPIAGFIVMFGFNSWVTVVVYGVIMGIIGLIWGYIGSIVFKKYPIVTKAD
                     MIKRGATDA"
BASE COUNT         1989 a         1419 c         1150 g         1959 t
ORIGIN      
        1 aaatgtttcc atatttaaag ttaaatgggt gggataaatg caattactct ggaagatgtt
       61 taaaaagaat caatttgaag ccaatattga tgaatgtggc attgaaatcg gaacaccaca
      121 tgggggttat caatatgagg tgaccaaacc agcagtgctc catattgtca tgtctggaac
      181 gggtacgctc acatacaatc aaaagaagta tacattgaaa ccgggtgatc tcttcttact
      241 ttgtcgtggc atgaacgtcc actatgaatc cactttggac gagccgtgga catattattg
      301 ggtaggtttt agcggaaaac tcgtttttga ttatttaaac cgtacatctt tatatgaaac
      361 acgcgtcatt caaaatcaac caacgaacac cattcgccaa atcatatatc ggatgtgtca
      421 gcgttctatt gaatacgcca cagaaaactc tgatgatatt caacatatgc gcgatttata
      481 cgaactccta tatgaactgc atcaacattt tcccaaaccg tttcatgtcg ttaaaaatga
      541 aagatattct aacgttagag aagcgattcg ttatattaat gacaattata tgcatgcgat
      601 ttcgattaat gatgtcgcca agcacgtcaa tgtcagccgt agttacctat ataaaatgtt
      661 taaaaagcac atcgatcaat ccccgcaaca ttatttaatt catattcgga tgtatcacgc
      721 atcacaatta ttcaaggaaa cagatttgca aagtcaagaa attgcagatc gtgtaggata
      781 taaagatcca ttactatttt cgagagcatt taaaaaacat tttggtgtca cggcgaccca
      841 atatcgtgaa gaacagcagt taagaattga aagtacattg gacaatcaaa aacggtgata
      901 caacccaatg atcaattact cactatttaa aggtatatat ctactcactt cgaacaatca
      961 tactcgattt gatttttata tagatttttg cctttaaaaa aagtataata gtttagtatg
     1021 ggattgaaag ccctttctat tttactaact caaagggggg agtgtaacaa tgttagagct
     1081 taacagtatt acaacattgt ttcttgcctg tctattatta attgtggggc aagctattgt
     1141 gaataaagta gaaatattta atcgactcag cattccatct cccgtcatag gtggactcat
     1201 ctttgcgatt atctctgcaa tattaacttc taccggggta ttacacatca aaatcgatgg
     1261 caaatttttc caagactttt ttatgttagc ctttttcaca acaattggat taggggcgtc
     1321 atttaaatta ttaaaactcg gtggcaaagt gttaattgtc tactgggttc tctgtggtgt
     1381 attagcgacc ttccaaaacg tcattggtgt gtccatggca aaagtgttga acattgatcc
     1441 gctattaggt ttaacagcgg gtgcgatgtc aatggaaggt ggacacggga atgcagcagc
     1501 gtatggtcaa acgattcaaa attatggtat tgactcagct gtgacagccg cacttgcagc
     1561 ggcaacgtta ggtcttgtag cgggcggcct attaggtgga ccagtcgtac gttacttaat
     1621 taaaaaacat gacttaacac ctagtaatac agaaacgatt caaaaagact attcaaatgt
     1681 agaattaaac cgtcgtcttc ataaaaactt tactgtgaat gaagtattct ttattcaagc
     1741 aacagtcata ttattctgta tgggacttgg gacatattta ggtcaattat tcagtgactg
     1801 gtcaggaatc aatattccat tatatgttgc ttcaatgttt attgcagtaa ttattcgtaa
     1861 catttcggaa tttgcaaatc taaacttaat cgacttaaaa ctcacaaatc aaattggcga
     1921 catttcatta agtattttct tatcaattgc gttaatgagt attaagttaa cagaagtata
     1981 caacttagca ttaccactga ttgttatcgt tatatgccaa attattttcg tcgcactatt
     2041 ctctattttc atcgtcttcc gcttgctcgg taaaaactat gatgcagccg tgatgattgg
     2101 tggtttcatc ggacacggtc ttggcgcgac accgaatgca atggccaatt tagatgccat
     2161 tacgaaaaag tttggtaatt caccacgtgc ctatttggtc gttccaattg ttggcgcatt
     2221 tttagttgat ttactcggag taccgattat tacgacattt attaacatct ttaaaccata
     2281 aaaaaaagag gtgcgtacac ctcttttttt atgcttcttg gcgttgaatt tcccaaccat
     2341 atggctcaga aaattgtgac caatccgcat caatttcttg actgttcaat aagcacgcat
     2401 ctaattgtgc agtgattgcc gcttcatcta aatcaattcc aatcataaca agttgtgtat
     2461 gacggtcacc atattcagga tcccaatctg cacgcacatc cggtctttct tgtaaaatcg
     2521 ccgcacgttc agcttttggc atacttgcta cccaaaatgt cacaggatga atatcaacgg
     2581 ctgttcctgc ttgagaaacg agacatgcga cattgttgta ttgtgctaac caagcaattc
     2641 ctttcgcacg tacaatggat tcagacatat tttcaagaaa agcgttaaag cgttctgcgt
     2701 gaaatggtaa acgtctgcga taaacaaatg acgaaatacc atattcttca gtttcaggtg
     2761 tatgtgtcgc atgtccaccc gcctcaagtt cttgcaacca acctgctgat tgactcgccg
     2821 cttcaaaatt aaagcgccct gtttctaata cttcatcaat gttcacttgt gcattgaccg
     2881 ctcggattaa ttttgcagtc ggttgtaatt tacgcaacat cgcttctaaa cgattcgcct
     2941 cttcttcact cactaagtcg attttattca agatgagcac atcacaaaat tcaatttgat
     3001 caatgagtaa atcagcaatc gtacgttcgt catcttcacc caccgcttga tctcgatcta
     3061 acaacatgtc tccagattga tagtctttaa taaatcggtt cgcatcgaca acagtgacca
     3121 tcgtatcgag acgacaaatc tctgttaaat caatccctag cgcttcgtcc acgtaagaaa
     3181 atgtttgcgc aacaggaacc ggttcagaaa tccctgtcga ttcaataaca atttgatcaa
     3241 tgccgccacg cttaacgata cgttcgacct cttttaataa gtcatcgcgc aatgtacaac
     3301 aaatacaacc attagaaagt tccacgagtt tttcatctgt acgcgaaagt ccccctcctt
     3361 cagcgacaag atctttatca atatttacct cactcatatc gttcacaatg acagcaattc
     3421 ttcttccttc gcgattgttt aaaatatgat tcagcaaagt cgtcttacct gatcctaaat
     3481 acccacttaa taccgttact gggattttcc ccataaatag ccctcctcat ttcattacaa
     3541 atcgtaataa ttacgtttta cagtatataa taaatacttc catcaacgca atgaaaattt
     3601 gaaatgattt ttgggctgac ccgttaactg tattaaaaaa ggaacgaatg acggcgtgat
     3661 gacaccctca tgcattcctc agttcgacta caattgacgc tgttgtatcc agttttttaa
     3721 atgcggatca aacacaatcg ccgcttgacg caattctgtg atatttttgg cattcaataa
     3781 agtcataata taagccattt gtgttttaaa atcttctaca tattcaatcg tcgcttccac
     3841 gccctcttca tgaagcatct ttaaaatcgg tcgcgacata cccactgctt ctgcacctaa
     3901 acgtaatgct ttaatcgcat caagtgggtg gcgtatccct ccacttgcaa gtacatggac
     3961 gcgactgctc aaatttcggg cttctaataa tgaaacgact gtcgattgcc cccagtcttt
     4021 taaataaccc atatctttaa attggcgacg ttcattttct attgagataa agttcgttcc
     4081 accatgacca ctaatgtcaa cataagagac gcctacatcg ataagttgtt gtatcgtgtc
     4141 atagctcatc ccaaagccta cttctttcac aatgaccggt acctcgacgc ctttaataat
     4201 ttcactgatt cgcattaacc aatgtttgaa ttgtcgattc ccctctggca tgactaactc
     4261 ttgtggtgcg ttaacatgaa tttgtaacgc attggcatga atcatctcaa tcgccgcttg
     4321 tgcttcttcc aacgtcacgt ccgcattcac attcgcccaa atttgaccct ctggatattg
     4381 ttcacgagcc actgtataag aatgccgtac agctggattt ttcaacgcgg catgcatact
     4441 tcctacagcc attggaattt gtgtagcttt agcgacttga gccaattgtt cattcgtttt
     4501 taccgtccat tcagaaccac ccgtcatcgc attaatatag aggacgtgtg acatatggag
     4561 tgctttaaag ttaggcaaca gtgtcacctc atctacattc atttccggta ttgcatgatg
     4621 aacaaattga atgcgatcaa aatcggattg tagcgtatca ctttgcgcga gtgctaatcg
     4681 tacatgttca ttttttcttt gttctctttt attcgtcatt accttaaaaa cccctcatta
     4741 ttggttgatt aatttgacta tatcatattc agtgccgaca taaagtattt tcttgaaatc
     4801 aacatattaa aaaagaaata tggagatgtc acactgtttt atctctttaa cattttgcgg
     4861 tatactgatg aacaaataaa acaaagaggt gtccctatgt tcaattaccc tttttatgat
     4921 acatatcgcg ttgaaaatga ttggattgat cgcaatggtc atatgaatga tgctgtttat
     4981 gcaagacttt ttagtttagc catcgatcat tttcatgatg ccattgggtt aacaacagca
     5041 gaacgcgacc gtcgaaacta cacggttttc actttagaaa ctcatattac gtaccttaaa
     5101 gaactaaagc atgatacacc ctttcacatt aaagttcaca tttatgatta tgatgtcaaa
     5161 cgcacacact tctttttaga gctgattcat caagaaacag aaactgtcat ggccactgca
     5221 gaaacgatga tgatgggtat ggatcgaaaa acagagcgcc cagcagtgtt tcctgacgat
     5281 attttccacg caattcaaca ctatgctaac tcacaaggaa cgatgcagtg gccaaaacaa
     5341 ttgggacacc gaatcggcat tcctcgcgca taaattcaaa aaacactaca agtcctcgtc
     5401 acagcttgta gtgttttgtt atgttattca attatgcgtc tgttgcacca cgtttaatca
     5461 tgtctgcttt agtgacaatt ggatattttt taaagacaat agagccgata tagccccaaa
     5521 taagtccaat aatccccatg atgacaccat acacgaccac agtcacccaa gaattaaaac
     5581 caaacatgac gataaagccg gcaatcggag tcgctgtccc tgtcgcatcg ttaatcaaac
     5641 cggaaagtgc aatgacaaga cctgccgtcg caccaccaaa aaagttcgta atataaattg
     5701 gaatcggatt ggccgaaacg atatctgctt gtgacaacgg ttcaatactc actgaaatcg
     5761 tcgctttacg gtcacctaat tttaaacggt ggaacagtgt gccgttcata aatgcagaac
     5821 taaatgcggc catcgcacca atagccattg gcacacctgt taaacctagc agtgcggtca
     5881 acgccatcga acttagtggc gctgtaccga cgacagtaat gatgccacct aaaataatcc
     5941 ccataatgac cgggcttgta tctgtagaac tttgaataat gtcaccaatt ctaacgagtg
     6001 tattgttgac aacaggtgtt aatagcatcg cgatcgctct tgataatggt gcaacgatta
     6061 atacagcaac aataagatcc acaccgtctg gcacgtattt ctcagtatat ttcattaaat
     6121 aaccgataag ataacccgca aaaaatcctg gtaataaatc catcccccca caagccgccg
     6181 caatcactaa ggcgtaaacg ggcgaaacac caatggctaa agccgtcaga cccgctgcag
     6241 caacaccacc taagtcaccc gctgcagcac ccacttgttc taaaaagtca ttgtggaaca
     6301 cgcgaccacc aacgtattta ttaaaagctt caactaaaaa tgtcgcaatg gctgcattcg
     6361 caagtgcccc catcgcacgc ataccattag gcgctttata tgtaaataat gtgaaaatga
     6421 cgagtactaa aactaaaaat gctgtaccga taagtaagtc cataatgccc ccctcttgtt
     6481 attcgaaaaa ggccccttgt tcatcatttc aattttt
//
LOCUS       DANHOL010000126         6498 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.127, whole genome shotgun sequence.
ACCESSION   DANHOL010000126 DANHOL010000000
VERSION     DANHOL010000126.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 6498)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6498)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6498
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.127"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(159..1523)
                     /gene="rlmD"
                     /locus_tag="PTC08_001899"
     CDS             complement(159..1523)
                     /gene="rlmD"
                     /locus_tag="PTC08_001899"
                     /EC_number="2.1.1.190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uracil(1939)-C(5))-methyltransferase
                     RlmD"
                     /protein_id="HDK5683403.1"
                     /translation="MVLVKKNEVYEGKVVDLTHEGHGVIKQDRYPIFIPQTLIDEEVQ
                     YKVIKVKKNFAIGKLMNVKTASPDRVTPPCDYYQQCGGCQLQHLSYHAQLEMKRKQVI
                     NLFHHKGKMTEVPIHDTIGMDDPWRYRNKSQIPVGTNRNGQIQMGFYRQRSHDIIDMD
                     HCLIQNDDQNDMMNVIKSLLEKYHIPAYNEHIHQGLVRHVVIRKGYYTNEVMVIFVLN
                     GKKLPHHNDIVTALTSQFQQIVSIKLNFQTNKTNVIMGHTSKTIFGKDIIEDTLDDLT
                     FEIGDLSFYQINVTQTQKLYRQALQYANLTGNEVVLDAYCGIGTISLFMAPHAQHVYG
                     VEVVPEAIEDAKRNARYNQLNNTTFVAGAAEDVILKWQQDGIQPDVVTVDPPRKGCDA
                     TFIETLNALAPKRIVYVSCNPSTQLRDIEMLSTQYELKEMTPVDMFPHTTHVETVALL
                     VRKY"
     gene            complement(1695..2627)
                     /locus_tag="PTC08_001900"
     CDS             complement(1695..2627)
                     /locus_tag="PTC08_001900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase"
                     /protein_id="HDK5683404.1"
                     /translation="MRKRARIIYNPTSGKEVFKRALPDVLIKMEQAGYETSAYATQKV
                     GDATEEAARAIEAQYDLLIVAGGDGTLNEVVNGIAEKPNRPKLGLIPMGTVNDFGRAL
                     HLPTDIFEAVDVILDGKTVQVDIGKMNSRYFINLAGGGKITEVSYEAPSKLKSIVGPF
                     AYYIKGFEMLPQMHAVDVRIEFDSQVFEGEIMLFLLGLTNSMAGFEKLVPDAKLDDGM
                     FTLLIVEKANIAELGHIMTLASRGEHIKHPKVHYHKAQSVNISSFSDMPLNVDGEYGG
                     QLPANFLNLVRHIEVFSPAQEDNALLIDEPTQSE"
     gene            complement(3305..4732)
                     /gene="gatB"
                     /locus_tag="PTC08_001901"
     CDS             complement(3305..4732)
                     /gene="gatB"
                     /locus_tag="PTC08_001901"
                     /EC_number="6.3.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatB"
                     /protein_id="HDK5683405.1"
                     /translation="MHFETIIGLEVHVELKTDSKMFSNAPVAYGAEPNTNTSVIDLAY
                     PGVLPTVNRRAVDWSMRAAMALNMEIATESKFDRKNYFYPDNPKAYQISQLDQPIGEN
                     GYIDIEVNGETKRIGITRLHMEEDAGKSTHKDGYSLVDLNRQGTPLIEIVSEPDIRSP
                     EEAYAYLEKLRSIIQYTGVSDGKMEEGSLRCDANVSLRPYGQKEFGTKAELKNLNSFN
                     NVRKGLEYEVKRQEEELLNGGEILQETRRFDESTGKTILMRVKEASDDYRYFPEPDIV
                     PLYIDEAWKARVRESIPELPDARKEKYVKEFGLPAYDAHVLTLTKEMSDFFEAAVEEG
                     ADVKMISNWLMGGVNEYLNKNQIELQDTGLTPANLAGMIKLIEDGTMSSKIAKKVFPE
                     LAQNGGDAKQIMKDKGLVQISDEGAVLEFVQQAIAENPQSVEDYKNGKGKAMGFLVGQ
                     IMKLSKGQANPQLANQLLKQELDKQ"
     gene            complement(4746..6206)
                     /gene="gatA"
                     /locus_tag="PTC08_001902"
     CDS             complement(4746..6206)
                     /gene="gatA"
                     /locus_tag="PTC08_001902"
                     /EC_number="6.3.5.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatA"
                     /protein_id="HDK5683406.1"
                     /translation="MSIRYESIENLQKMIKDNQIKPSEIVKDIYDAIEETDPTIQSFL
                     ALDKENAMKKAEELDTLQAKGEMEGKLFGIPMGIKDNIITEGLETTCASRMLEGFVPI
                     YEATVMKKLHNENGILIGKVNLDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAA
                     AVAAGLVPFTLGTDTGGSIRQPAAYCGVVGLKPTYGRVSRFGLVAFASSLDQIGPITR
                     NVKDNALVLEAIAGEDEMDSTSAPDVATDFTADIGKDIKDMKIALPKEYIGEGVDEEV
                     KEAVLKAAETLKSLGAIVEEVSLPRTAYGIPSYYVIASAEASSNLARFDGIRYGYHSK
                     EAQTLEELYKLSRSEGFGKEVKRRILLGTYVLSSGYYDAYYKKAQKVRTLIKNDFENV
                     FKDYDVILGPTTPTVAFDLGAEINDPLTMYANDLLTTPVNLAGLPGISVPCGLAENGR
                     PIGLQLIGKPFDEKTLYRVAHQYETQFNLHDQYQKL"
     gene            complement(6209..>6498)
                     /gene="gatC"
                     /locus_tag="PTC08_001903"
     CDS             complement(6209..>6498)
                     /gene="gatC"
                     /locus_tag="PTC08_001903"
                     /EC_number="6.3.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatC"
                     /protein_id="HDK5683407.1"
                     /translation="KKQVEHIANLARLNVTEEDTADMQQTLEGILNFCHQIDSVDTEQ
                     VKPTNHVLDLQNVLRDDVAVTGLPQEKALTNAKEVEAGQFKVPAVMNREDA"
BASE COUNT         1887 a         1441 c         1039 g         2131 t
ORIGIN      
        1 agaataactt caaaacttca ttactcgcca ttctctagag attaacactg tcaaatcagt
       61 tccagtatca acgctcctaa aatagcacca aaacaaaaag ggttttaagt cacattctca
      121 aaaatgttct caaaaaaccc ttgagtgatt aatctatatc aatattttct tactaataac
      181 gcaactgtct cgacatgtgt cgtatgcgga aacatatcga caggtgtcat ttcttttagt
      241 tcatattgcg tgcttagcat ttcaatatct cgtaattgtg tacttggatt gcatgacaca
      301 tagacgatac gttttggggc taacgcgttt aaagtttcaa taaatgtcgc gtcacaccct
      361 ttgcgcggtg ggtcaactgt caccacatca ggctgaatcc cgtcttgttg ccattttaaa
      421 atcacgtctt cagcagcacc agcgacaaaa gttgtattgt tcaattgatt gtagcgcgca
      481 tttcttttcg catcttctat cgcttcaggg acaacttcta caccatatac atgttgggcg
      541 tggggtgcca taaataaact gatcgtccca ataccacaat acgcatctaa tacaacttca
      601 ttacccgtta aattcgcata ctgtaacgct tgacgataca acttttgcgt ttgtgtcaca
      661 ttgatttgat aaaaggacaa atcgccaatt tcgaaagtca aatcatctaa tgtatcctca
      721 ataatgtctt taccgaaaat cgttttggac gtatgcccca taatgacatt cgttttgttc
      781 gtttggaaat tcaacttgat actcacaatt tgctgaaact gtgatgttag agcggtcaca
      841 atatcgttat gatgtggtaa ctttttaccg ttgagcacaa aaataaccat cacttcattc
      901 gtataatagc ctttacgaat cacgacatga cgtacgagac cttgatgtat gtgttcgtta
      961 taagctggaa tgtgatattt ttccagtaaa cttttaatca cattcatcat gtcgttttga
     1021 tcatcatttt gtatgagaca atggtccata tcgataatat catggctgcg ttgacgataa
     1081 aagcccattt ggatctgacc attgcgattc gtcccaaccg gaatttgaga cttgtttcga
     1141 taacgccaag gatcatccat tccaatcgtg tcatgaatcg gcacctctgt catttttcct
     1201 ttatgatgaa acaaattaat cacttgttta cgcttcatct ctaattgcgc atgatacgac
     1261 aaatgttgaa gttggcatcc cccacactgt tggtaataat cacatggcgg tgtaacacga
     1321 tctggacttg ccgttttcac attcatcagc ttaccaatcg cgaaattctt tttcacttta
     1381 atcactttat attgcacttc ttcatcaatt aacgtttgag ggataaatat cggatagcga
     1441 tcttgtttaa tcacaccatg cccttcatgt gtcaaatcaa ccacttttcc ctcatacact
     1501 tcatttttct ttactaaaac catcaatttc atctcacttt tttataaaca gaatctactt
     1561 caaagggaaa ggagcaggac caaaaactta acatctgagt caaatttcat cgtcccgctc
     1621 ccacgagagt aatgtcatta catcatgcgg ttttgcgtac actacctatt tattttcagc
     1681 acacctctgg atcgttactc agattgcgta ggctcatcaa ttaacaacgc attatcttct
     1741 tgcgccggag aaaaaacttc aatatgacga actaaattta aaaagttcgc tggtaattga
     1801 cccccatatt caccatctac gtttaacggc atatcgctaa aggaagaaat atttaccgat
     1861 tgcgctttat ggtaatgtac tttcggatgt ttaatatgtt caccgcgtga ggcaagtgtc
     1921 ataatatgtc ccaattctgc aatatttgcc ttttcaacaa tcaacagtgt aaacataccg
     1981 tcatccaact tcgcatctgg tactaacttc tcaaaaccag ccattgaatt ggttaagccg
     2041 agtaagaaca acatgatttc accttcaaag acttgcgaat caaactcaat ccgcacatcg
     2101 actgcatgca tttgaggtaa catttcaaat cctttaatat agtacgcaaa aggtccgact
     2161 atcgatttta atttactcgg tgcttcatac gaaacttccg taattttacc accgccagct
     2221 aaattaataa aataacggct attcatttta ccaatatcaa cttgaacagt tttaccatct
     2281 aaaatgacat ccacggcttc aaaaatatca gttgggagat gtagtgctcg accgaaatca
     2341 ttcaccgtcc ccattggaat taaacctaac ttaggacgat tcggtttttc agcaatacca
     2401 ttcacgactt cattcaatgt accgtctcca ccagcgacaa ttaacaaatc gtattgggcc
     2461 tcaatcgcac gcgccgcctc ttctgtcgca tcgccaacct tttgagtcgc ataggcactc
     2521 gtctcataac cagcttgttc cattttaatt agtacatcag gtaatgcacg tttaaacact
     2581 tccttacccg atgtaggatt atagattatt ctcgcacgtt ttctcattta tatccctcaa
     2641 tttttcagta ctcacaactt atattatagt aaacaaagat gtaatgaaag ctaaaaacaa
     2701 ccaaaagcgt aaaaatgata agaaaataac gtcaatcccg ttttcaaaag gcgattgcgt
     2761 catatgttga catttcaact ttcctagcca agcaaagaaa ttgagttact tcatcattct
     2821 ttcaccacta cacctaagat caattaataa tcatataaat aaaatgagtg aaaaaatgca
     2881 tgcgtatgat taatacatgc gccgtctgtt tggtaagagt tattcgtcat ttccactcgt
     2941 ttgagcaccg caactaagat tgctagaaca agctcgcttt cattccttgt tacgcaactg
     3001 attaccattc agggcgcgac tcctgaggga aaagatgcgc cggaaatcca tcaacgcctc
     3061 caccttataa cagtttcagt taagcgttga ttacttggga acagccctag gaaagcaaac
     3121 cctaaaaggc aatccataca gatattcaca ttatgaaagc gagccctagt tctgcgattg
     3181 caaggtgtta taatcaatac gacatcttac gtcatactca aaaaacaaaa tgtcacaaaa
     3241 aagacgagtg tgaaatacaa tcatcaccat tgcattccat ctactcgcct ctattcaaaa
     3301 caacctattg tttatctaac tcttgcttca acaactgatt tgcaagctgt ggattcgctt
     3361 gacctttcga caatttcata atttgtccaa ctaagaagcc catcgcctta cctttcccat
     3421 tcttataatc ttcaacagat tgtggatttt cagcaattgc ttgttgtaca aattctaaca
     3481 cagcaccttc atcagaaatt tgaacaagac ctttatcttt cataatttgc tttgcgtccc
     3541 caccattttg cgctaattct gggaacactt ttttcgcaat tttactactc attgtgccat
     3601 cttcaattaa tttaatcata cctgctaagt ttgctggtgt aaggcctgta tcttgtaact
     3661 caatttgatt tttattgaga tattcgttta cgccacccat taaccagttc gaaatcattt
     3721 tcacatctgc gccttcttca acagccgctt caaagaaatc tgacatctct tttgttaatg
     3781 ttaaaacatg tgcatcatat gcaggtaaac cgaattcttt tacgtatttt tctttacgtg
     3841 catctggtaa ttcaggaatc gattcacgaa cacgcgcttt ccatgcttca tcgatatata
     3901 aaggtacaat gtcaggttca gggaagtaac ggtagtcatc tgacgcttcc ttaacacgca
     3961 ttaaaatcgt tttacctgtg gattcatcaa aacgacgtgt ttcttgtaaa atttcgccac
     4021 catttaacaa ttcttcttct tgacgtttga cttcatattc taaaccttta cgcacgttgt
     4081 taaatgaatt taagttttta agttcagctt tcgtaccaaa ctctttttga ccatatggac
     4141 gtaaagatac gttcgcatca caacgcaatg aaccttcttc cattttaccg tcagatacgc
     4201 ctgtatattg aataatagaa cgtaattttt ctaaatatgc atacgcctct tctggcgagc
     4261 gaatatctgg ttcagatacg atttcaatta atggtgtccc ttgacggttt aaatcgacaa
     4321 gtgagtaacc gtctttatgt gtagatttcc cagcatcttc ttccatgtgt aaacgtgtaa
     4381 taccgatacg tttcgtttcg ccgttcactt caatgtcgat ataaccattt tcaccaatcg
     4441 gttggtctaa ttgtgaaatt tgataagctt tcgggttgtc tggatagaaa tagtttttac
     4501 gatcaaattt tgattcagtt gcaatttcca tatttaatgc cattgccgca cgcattgacc
     4561 aatctactgc acgacggttc actgttggta aaacaccagg atacgccaaa tcgatgacgc
     4621 ttgtatttgt attcggttct gcaccgtatg ctaccggcgc atttgaaaac atttttgagt
     4681 ccgttttcaa ttcaacatgg acctcaagtc cgattatcgt ttcaaaatgc attgattgcc
     4741 actccttata atttttgata ttggtcgtgt aagttaaatt gtgtttcgta ttgatgtgcg
     4801 acgcgatata acgttttttc atcaaatggt ttaccgatca gttgtaaacc aattggacga
     4861 ccattttccg ctaaaccaca cggtacagaa ataccaggta aaccggctaa gttcactggt
     4921 gttgttaata agtcattggc atacattgtt aatggatcat taatttcagc acctaaatca
     4981 aacgcaacag ttggtgttgt aggtcctaaa atcacatcgt aatctttaaa aacattttcg
     5041 aagtcatttt taattaatgt acgtactttt tgtgcttttt tatagtaagc atcgtaataa
     5101 ccagaactta acacatatgt tcctaataaa atacgacgtt tcacttcttt gccaaagcct
     5161 tcgctacgag acaatttgta aagttcttct aaagtttgtg cttcttttga atgataaccg
     5221 taacgaatac catcgaagcg tgccaagtta gatgatgcct cagctgaagc gatgacgtaa
     5281 tatgaaggaa taccatatgc tgttcttggt aatgacactt cttcaacgat ggcacctaaa
     5341 gatttaagtg tttctgcagc ttttaatacc gcttctttca cttcttcgtc gacaccttca
     5401 ccgatatatt cttttggcaa cgcaattttc atatctttaa tgtctttacc aatatcagca
     5461 gtaaagtctg tcgcaacgtc tggtgcactt gttgaatcca tttcatcctc accagcaata
     5521 gcttctaaca ctaatgcatt atccttaaca ttacgtgtaa tcggtccaat ttgatccagt
     5581 gatgacgcaa aggcaactaa accaaaacgt gacacacgac cgtatgttgg ttttaatcct
     5641 acaacaccac aatacgctgc aggttggcga atagaacccc ctgtgtctgt acctaatgta
     5701 aatggtacaa gccctgctgc aactgctgct gcggaaccac ctgatgagcc acctggaacg
     5761 gctttatggt cgaatgggtt taccgtcttt ttaaagtaag acgtctctgt agaaccaccc
     5821 atcgcaaatt cgtctaaatt cactttaccg ataagaatac cattttcatt atgtagcttc
     5881 ttcattactg ttgcttcata aatcggtaca aagccttcta acatcctact tgcacaagtc
     5941 gtctctagac cttcagtaat gatattatct ttaatcccca ttggaatacc gaacaattta
     6001 ccttccattt cacctttcgc ttgtaaggta tctaattctt cagctttttt catcgcattt
     6061 tctttatcga gcgctaaaaa tgattggata gttggatctg tttcttcaat tgcatcgtaa
     6121 atatctttca caatttcaga aggtttaatt tgattatcct taatcatctt ttgtaagttt
     6181 tcaatagatt catagcggat gctcatcttt atgcgtcctc cctgttcata actgctggta
     6241 ctttaaattg tccagcttcc acttcttttg cattcgttaa tgctttttct tgtggcaatc
     6301 ctgttaccgc cacatcgtca cgtaacacat tctgtaaatc taatacatgg tttgtaggtt
     6361 taacttgttc tgtatcgaca gaatcaattt gatgacaaaa atttaaaata ccttctaatg
     6421 tctgttgcat atcggcagta tcttcttctg tcacatttaa gcgtgcaaga ttcgcaatat
     6481 gctcaacttg ttttttgg
//
LOCUS       DANHOL010000127         6469 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.128, whole genome shotgun sequence.
ACCESSION   DANHOL010000127 DANHOL010000000
VERSION     DANHOL010000127.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 6469)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6469)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6469
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.128"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(135..355)
                     /locus_tag="PTC08_001904"
                     /pseudo
     CDS             complement(135..355)
                     /locus_tag="PTC08_001904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001095317.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
     gene            852..1799
                     /locus_tag="PTC08_001905"
     CDS             852..1799
                     /locus_tag="PTC08_001905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside hydrolase"
                     /protein_id="HDK5683408.1"
                     /translation="MKPVYFNHDGGVDDLISLFLLLHMDDVQLIGVSAIGADSYVEPA
                     ESASRKIINRFSKYPLDVAASEERGKNPFPKDWRMHAFFMDALPILNERVPVQSRLRD
                     IHAYEDIIERIENAHQPVTLLFTGPLTDLAKALEVAPHITQKIERLVWMGGTFLERGN
                     VEEPEHDGTAEWNAFWDPEAVETVFNSDIAIDMVALESTNQVPLTLDVRQMWADERHY
                     PGVDFLGVSYAAVPPLTHFQTNSTYFLWDVLTTAYIGKPELVKKEKVKASVDTKGPSQ
                     GRTYLDEVHGREIQVINHVERDDFFRYITDLAKKVGTDL"
     gene            complement(1913..4909)
                     /locus_tag="PTC08_001906"
     CDS             complement(1913..4909)
                     /locus_tag="PTC08_001906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-galactosidase"
                     /protein_id="HDK5683409.1"
                     /translation="MEFNFHTNINIQHVNMLPRTAYKLPYTSIEEYQTHPAPHHMHRV
                     TSLNGEWDFQYFASLDHFRQRSSYAQKGIITVPSVWNLQGYDQLQYCNVQFPIPFDLP
                     HVPDNTSCGYYEKIFTIKNYQEGLDYHLTFEGVSGAHYIWVNGEFVGYAQISHALSQF
                     DITERVTEGDNHIAVLVLKYSDATYFEDQDMFRHSGIFRDVYIVARQRERLNDYQIHT
                     AIGDSVGYIDVTVQDVEEGVTLHYQLLNPDQRSITEGTLNEKMTRISVMEPRLWSAEH
                     PDLYTLIIEANGEYFVQRVGIREVKIAQQQLWMNGQAVKLRGVNYHDSYPQTGYTVTE
                     EQLIKDLTLMKKANFNAIRTAHYPKSPRFYELTDQYGFYVMSEADLETHGVVLLYGDE
                     NLDDFNLIMDDPRYEQAVVDRIDASIVPFKNFSSIISWSMGNESGYGCNMERGLAHAK
                     ALDASRPLHYEGAHYAASHHDRSNLDMISRMYPSPEEIVTRYLTKPNLDKPFVLCEYA
                     HAMGNSPGGLKAYHELMERYDSFIGAFVWEWCDHAIQVGVKEGRPMYRYGGDFGEKVH
                     DGHFCVDGIVSPQRTPHAGYYEFQQVHRPLVFIAREGTRLTFKNKLDFTNIHDYVTLQ
                     IIVTTITGETATFTVDAPYIEPHAQGELDIAPYVHLDIKDLSTCTIQYILKADHPLLT
                     PGERIGHDQVVFQRIESTHFVPETTEIPLYLNETETTIQVKRGRWCYILDKHTANLQQ
                     VSHQQTMLLSEGSQLNIWRAPTDNDIQIQQGWRTAKYDTAYPKVYHTHVQQQEDHVII
                     TFDMSMVEDSRPRLVEGIVTWTISEDGTIHVAHQLKKDVRMPSLPRLGVTFGLPDRFQ
                     ALTYYGQGPYESYQDKQEASYLSVFNTTVRDQYEHPIFPQEVGAHIDTTYVGLHDGSY
                     TCAVWSETPLSMNAKPYSDAMLTEANHDDELEETGVSYLHIDTAQSGIGTNSCGPELP
                     EQYRLLEEHYHFDFKLKFYEQTSITE"
     gene            complement(4937..6316)
                     /gene="melB"
                     /locus_tag="PTC08_001907"
     CDS             complement(4937..6316)
                     /gene="melB"
                     /locus_tag="PTC08_001907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="melibiose:sodium transporter MelB"
                     /protein_id="HDK5683410.1"
                     /translation="MKQQLSQIQKLSFGFGAIGKDAIFNIVSLYLMYYITDIVGLSPA
                     FVGILFFIARIWDAINDPFMGMIVDNTHNRFGKFKTWLVIGTVINAVVTVLLFTHFDL
                     PGIWMYVYIAVMYILWGMTYTMMDIPYWSWLPNLTHQAKEREALSVIPRFFASLAAFT
                     VGTFGLYFIELLGHGNASTGIFIFAVVCSVVFILTIAITVIVVPEDRAMEEQEGIKVR
                     FRDIKRILFQNKELLAMMGVLLTFNLCVQTLNGTIIYYFKYVVAMPHFFSYFNAMILA
                     EMTGLLMLPFWIRQVGRQVAFNSAITAIVGGLTVILIFGWFDPKALIWVIIGAMILRI
                     GTGFMIGITTIAIADVIDYGEVKFGHRNESIITSTNTFLTKTSQAISALIVGLGLSIL
                     GFVPNETQSIATQNGLRIMVIVAPIILVFISALLYHKAFHLKGDYLRDIERTLTFKRQ
                     REQQLNSNE"
BASE COUNT         1973 a         1355 c         1184 g         1957 t
ORIGIN      
        1 tttacatttc cgaaaattct gataaattat attttgtgag taatgttaat aataaatatg
       61 ataatgactc acaataaatt cagctgaatt ataaaaatgt caatagcggt ttgaaagtgt
      121 cgttttttgg cggtttaaga atgacgtatg tttaaacttt tttcactttt atagtcttta
      181 agtcggtatg aatcgcctaa attttaaata tttttgaatg gtgaataagt ctatcaataa
      241 tggctgctga cgctatcttg ttactaaatg agtcgcccca actagaaaaa gggatattcg
      301 tcgttatgat cgtggatttc atttcatatc ttagtgatat caattgatag aagagtttct
      361 ttgctagtgt atcgtgcatt ttaaatgatt tagatccttt aaaagttaaa ttggcagtag
      421 tggcagatac taaaagacaa gggtacgttt tgttagctac agcaccatat tcctatttca
      481 cttgtatcag ataacttaaa agcaggggta attaaaaatt caaaaacagg tataatactt
      541 aaccctggtt atgaagatat agccactcac tttagaacaa tcataatgcc aacacgcgtt
      601 cgtaaaccaa aagataaagt tacagtagaa aatactgtta agcaattaac aacttaccta
      661 tattgttcac tagtaatttt accacatcaa aaattaaaaa ttggcatcta taattcaaga
      721 ggattatttc tttctgtatt ttcgacattc caccgaactt ctgatgtata gacttgcgta
      781 tgcatacgtg acattgtaca ttttagacag agcgtgtgag acgactcaat tttaatttga
      841 aggagaacaa catgaaacca gtttatttca atcatgatgg tggtgtagat gatttaattt
      901 cgttattttt acttttacat atggatgatg tgcaacttat cggtgtgagc gctattgggg
      961 cagacagtta tgttgagcct gctgaaagtg catcacgaaa aatcattaac cgtttctcaa
     1021 aatatccact agacgtggca gcttcagaag agcgcggtaa aaatccgttt ccgaaagatt
     1081 ggcgtatgca tgcctttttc atggatgcac taccaatatt aaatgaacgt gtgccagtac
     1141 agtctcgttt gagagacatt catgcttatg aagatatcat tgagcgtatc gaaaatgccc
     1201 atcaacctgt aactttatta tttacaggac ctttaacgga cttagcgaaa gcgttagaag
     1261 ttgcgccaca cattacgcaa aaaatcgaac gcctcgtgtg gatgggcggt acatttttag
     1321 aacgtggtaa tgtcgaagaa cctgaacatg atggtacagc ggagtggaat gcattttggg
     1381 atcctgaagc tgtggaaact gtgttcaaca gtgacatcgc gattgatatg gtcgcattgg
     1441 aaagtacgaa tcaagtccca ttaacattag atgtccgtca aatgtgggca gatgaacgtc
     1501 attatccagg cgtggacttt ttaggtgtga gttacgctgc agttccacca ctgacacatt
     1561 tccaaacgaa ctccacttac tttttatggg atgtattgac gacagcttat atcggtaaac
     1621 ctgaactcgt taaaaaagaa aaagtgaagg cgtctgttga tacgaaagga ccgagtcaag
     1681 gccgcacata ccttgatgaa gtacatggtc gtgaaattca agtgattaat catgtcgaac
     1741 gtgatgactt tttccgatac attacggatt tagcgaaaaa agtcggcacg gatttataag
     1801 tcacttttaa taaaaagagg ctatggattt ctgatatgct ccctccaaag ttttcatttt
     1861 ttcaatgtcc acttcggagt gagcatatca gaatgtcccc gcctcttctt ttttattctg
     1921 ttattgaagt ttgttcataa aatttgagtt taaagtcaaa gtgataatgt tcttctagta
     1981 atcggtactg ctcgggtaat tccggtccac aactattcgt gccgataccg ctctgtgctg
     2041 tatctatatg caaataactc acgcctgttt cttctaattc atcatcatga tttgcttcgg
     2101 tcaacatcgc atcggaatat ggtttagcat tcatactgag tggcgtctct gaccaaacgg
     2161 cacatgtata gctcccatca tgtagcccta cataagtggt atcgatatgc gcgccgacct
     2221 cttgagggaa aataggatgt tcatattgat cacgaacagt cgtattgaac acagataaat
     2281 aactcgcttc ttgcttatct tgatagcttt cgtatggacc ttgtccgtaa tacgtcagtg
     2341 cttggaagcg gtccggcaag ccgaatgtta cacctaatct tggtaagctc ggcatgcgca
     2401 cgtctttctt taattgatgt gccacatgaa tcgtaccgtc ttcggatatc gtccatgtta
     2461 ctatcccttc aactaaacgc ggacgtgagt cttccaccat actcatatca aatgtgataa
     2521 tcacatggtc ctcttgttgt tgcacatgcg tatggtacac tttcggataa gctgtatcat
     2581 acttcgctgt acgccaacct tgttgaattt gaatatcatt gtctgtcggc gcacgccaaa
     2641 tgttcaactg gctaccttct gatagtaaca ttgtctgttg atgagacact tgttgtaagt
     2701 ttgctgtatg cttatccaat atatagcacc atctcccgcg cttcacttga atagtcgttt
     2761 ccgtctcatt caaatacaat gggatttccg ttgtctccgg tacaaaatgt gtactttcga
     2821 tacgctgaaa gacgacttga tcatgaccta tacgttctcc cggagtcaat aaaggatgat
     2881 ctgcctttaa aatatattgg atcgtacatg tgctcaagtc ctttatgtca agatgaacat
     2941 atggcgcaat atccaactca ccttgcgcat gtggttcaat ataaggggca tccactgtaa
     3001 atgttgctgt ctcacctgta atcgttgtca cgattatttg aagtgtcaca tagtcatgaa
     3061 tattcgtaaa gtccaatttg tttttaaacg ttaaacgcgt gccttcacgt gcaatgaaaa
     3121 cgagcggacg atgcacttgt tgaaattcgt aataacctgc atgtggggtg cgttgaggac
     3181 tcacaatacc atctacacaa aaatggccgt catgcacctt ttcaccaaag tcgccaccgt
     3241 aacgatacat cggacgcccc tctttcaccc ctacttgtat cgcatggtca caccattccc
     3301 acacgaaagc accaataaag ctatcataac gttccatcaa ctcatggtac gcctttaacc
     3361 cacctggaga attccccatc gcatgggcat attcacataa aacaaacggc ttatccaagt
     3421 tcggtttcgt taaataacgc gttacaattt cttcaggtga cggatacatg cgtgaaatca
     3481 tatctaaatt tgaacgatca tgatgtgacg cggcataatg ggccccttca taatggagtg
     3541 ggcgagatgc atccaacgct ttcgcatgtg cgagaccacg ttccatatta caaccatagc
     3601 cagattcatt ccccattgac cacgaaataa tcgaactaaa atttttaaac gggactatcg
     3661 atgcatcaat acgatcaaca acagcttgtt catagcgggg atcatccatg attaggttga
     3721 agtcatctaa attttcatcg ccatacaaaa gcaccacgcc atgtgtttct aaatccgctt
     3781 cactcatcac ataaaagcca tattgatcgg ttaattcata aaagcgagga cttttcggat
     3841 aatgtgccgt acgaatcgca ttgaaattcg cttttttcat gagtgttaaa tctttgatga
     3901 gctgttcttc cgtcaccgta taccccgttt gtgggtagct atcgtgataa ttgaccccgc
     3961 gtagtttcac agcttgtcca ttcatccaaa gttgttgttg cgcaatcttc acttctcgaa
     4021 taccgacgcg ttgtacgaaa tattcaccat tcgcttcaat gatcagcgtg tacaaatcag
     4081 gatgttcagc actccatagt cgcggttcca tcacagagat gcgcgtcatc ttctcattca
     4141 gcgtcccttc agttatgcta cgttggtccg gattcagtaa ttgataatga agcgtcacac
     4201 cttcttcaac atcttgtaca gtgacatcga tataaccgac actgtcaccg atcgccgtat
     4261 gaatttggta atcattcaac cgttcacgct gacgcgcaac aatatacaca tcacgaaaaa
     4321 tgcctgaatg acggaacata tcttggtctt caaaatacgt cgcatcagaa tatttcaata
     4381 cgagcactgc aatatggtta tcaccttccg tcacccgttc agtaatatca aactgagaaa
     4441 gtgcgtgcga aatttgtgca taaccgacaa actctccatt cacccaaata taatgcgcac
     4501 cactcacacc ttcaaatgtt aaatgataat ccaaaccctc ttgataattt ttaatcgtaa
     4561 aaatcttttc ataataacca cacgatgtat tatctggcac atggggtaaa tcaaatggaa
     4621 tcggaaactg cacattacaa tattgtagtt ggtcataacc ttgtaaattc caaacactag
     4681 gcaccgtgat gatacccttt tgcgcatatg atgaacgctg acgaaagtga tcgagtgatg
     4741 caaaatattg aaaatcccat tccccattca gtgacgtcac acgatgcatg tggtgaggcg
     4801 caggatgcgt ttgatattcc tctatacttg tgtaagggag cttgtatgct gttcggggta
     4861 acatgttcac atgttgtatg ttgatattcg tatgaaaatt aaattccata aaaagaacct
     4921 cctcatagat tacatcttac tcgtttgaat ttaattgttg ttctctttga cgtttaaaag
     4981 ttagcgtccg ttcgatatct cttaaataat cacctttaag atggaatgct ttatggtata
     5041 acaacgcact gatgaacact aaaataatag gcgctacaat caccatgatt cgcaaaccat
     5101 tttgtgtcgc aatactttgt gtttcattcg gtacaaaacc taaaatagat aatcctaatc
     5161 cgacaattaa tgcagaaatg gcttgtgaag ttttcgtcaa aaatgtattg gttgaagtaa
     5221 taatgctttc attacgatga ccgaacttca cttcaccata atcaatcaca tccgcaatcg
     5281 caatcgtagt tatcccaatc ataaatcccg tacctattct taaaatcatc gcaccgatga
     5341 taacccaaat cagcgcttta ggatcaaacc aaccgaaaat cagaatcacc gttaagccac
     5401 ctacaatggc ggtaatcgca ctattaaatg caacttgacg accgacttgc ctaatccaaa
     5461 atggtaacat caataatcct gtcatttcag ctaaaatcat tgcattaaag tatgaaaaaa
     5521 agtgcggcat cgcaaccaca tatttaaaat agtagatgat tgtcccattg agggtttgta
     5581 cacataaatt aaatgttaac aaaacgccca tcattgccag taattcttta ttttgaaata
     5641 agatacgttt tatatctcga aaacggactt taatcccttc ttgctcttcc attgcgcgat
     5701 cttctggtac gacaatgact gttatggcaa tagttagaat aaaaaccaca ctacaaacca
     5761 cagcaaatat aaaaatccca gtcgatgcat tgccatgacc taacagctca atgaaataca
     5821 acccgaatgt ccccaccgta aatgccgcaa gacttgcaaa aaaacgcgga atcacggata
     5881 aagcttcccg ctcttttgct tgatgcgtca aatttggcaa ccaagaccag tacggaatgt
     5941 ccatcatcgt atacgtcatc ccccacaaaa tgtacatcac tgcgatgtaa acgtacatcc
     6001 atataccagg taaatcaaaa tgggtaaata ataaaacagt tacgacggca ttaataactg
     6061 tgccaatcac tagccatgtt ttgaatttgc cgaaccggtt atgtgtgttg tcgacaatca
     6121 tacccataaa ggggtcatta atcgcatccc atattcttgc tataaaaaag agtataccta
     6181 caaaagctgg cgaaagaccg acaatatcgg tgatgtaata cataagataa agactaacta
     6241 tgttgaagat cgcatctttg ccaattgcgc caaagccaaa tgagagtttt tgtatttgtg
     6301 atagttgttg cttcaaatac gaacaccttc ttttcttttt ttaaaacgct ttcatacaca
     6361 aataaaatat catgtttctt gaaggtgtaa tattgttcta tggtgataaa tcatgtcaaa
     6421 atgtttcctg tttactaatt tataagaaac attttatcgt tttccatga
//
LOCUS       DANHOL010000128         6429 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.129, whole genome shotgun sequence.
ACCESSION   DANHOL010000128 DANHOL010000000
VERSION     DANHOL010000128.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 6429)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6429)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6429
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.129"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(<1..230)
                     /locus_tag="PTC08_001908"
     CDS             complement(<1..230)
                     /locus_tag="PTC08_001908"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683411.1"
                     /translation="MKEGIKWGYIDKNGTVFFSHNKNKREKINTDYFSKPYPITVHKP
                     LESKPQKLLFSLHGGPESFEFDDLRYYDLYSEA"
     gene            complement(536..1813)
                     /gene="pbp4"
                     /locus_tag="PTC08_001909"
     CDS             complement(536..1813)
                     /gene="pbp4"
                     /locus_tag="PTC08_001909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein PBP4"
                     /protein_id="HDK5683412.1"
                     /translation="MKKIILSIVVVFFASTIITPFARAYTPTPVELAQQSGYPVTWAY
                     QPEGMINISQTGQILYEFQSEQQWYPASMTKLMTMYLTLQAVKEKKLSLNDTVQITDQ
                     HYRMSTLPELSNTKLYPGETYTVAELLQITVSASSNAAALILANQVSDSTSDFVDKMN
                     DTAKSLGMTHTHYVNPTGAENRLLLEFAPKKYQHESSSTSSARDYAILAQHVVKDTPK
                     ILYFTKQIAPTQHGVTYYTFNDLLEGGNMSLPGTDGLKTGSSDIADYNNSLTTKRGKF
                     RIFHIIMGAGDYKHLGGEKQRNMMSASAINYTFSQYDYKKILSKGKHKIDGKSYYVTE
                     DLYDVVPKDMSKPYHLVVKDSQVHLDYPRKFITKNDGPPTVKVENPLIYESKSVVVSS
                     WHAFPILTSLAFLVIVLILAFILRRLLKLLFRK"
     gene            2088..3842
                     /locus_tag="PTC08_001910"
     CDS             2088..3842
                     /locus_tag="PTC08_001910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDK5683413.1"
                     /translation="MKARNPLVFLLKKISWPVGLIIVAVTIASIGSLTGLLVPLFTGQ
                     VVDKFTFESISPVFIIALVAVFLVNAVLSGFGYYLLNKIGEKIIYAIRSVLWEHIIHL
                     KMPFFDKNESGQLMSRLTDDTKVINDFISQKLPGFFPAVITLIGSLIMLFVLDWQMTL
                     LTFITIPIFILVIVPLGKIMQKISTNTQTEIANFSGLLGRVLTEMRLVKVANTEKLEL
                     DKAHSNLKTIYNLGLKQAKIAAVVQPISGIIMLITIGIILGFGGMRIASGAISAGTLV
                     AMIFYVLNLSIPLINLSTLVTDYKKAVGASQRIYEILHEPLENIAAPNLQDEIPTGDL
                     KFDHVYFGYDDTPVLKDVSFNVLRGEVTAFVGPSGSGKSTLFSLIERMYEIDQGGIYY
                     DGTSIDALSLTDWRRKIGYVMQSNAMMNGTIRDNILYGMDREVPEEELIHYAKLANCH
                     EFIMEFEQGYDTIVGERGLKLSGGQRQRIDIARSFVKNPDILLLDEATANLDSESERK
                     IQEALDILMENRTTIVIAHRLSTIKKAGQIIFLDHGEVTGRGRHEELMQTHAMYQQFV
                     ETQNLTQHRAVTEQTETE"
     gene            complement(4000..4158)
                     /locus_tag="PTC08_001911"
     CDS             complement(4000..4158)
                     /locus_tag="PTC08_001911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FeoB-associated Cys-rich membrane protein"
                     /protein_id="HDK5683414.1"
                     /translation="MTLFINLLLIALILGYATWVMLSFFKKSKQGKCSACESSKGCPT
                     ESLPKHLQ"
     gene            complement(4171..6165)
                     /gene="feoB"
                     /locus_tag="PTC08_001912"
     CDS             complement(4171..6165)
                     /gene="feoB"
                     /locus_tag="PTC08_001912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transport protein B"
                     /protein_id="HDK5683415.1"
                     /translation="MSNAYCILGNPNVGKTSLFNALTGSYEYVGNWSGVTVDKKVGQL
                     KKNSGHLIDLPGIYDLVPISRDETVVTDYLLHEKFDGMINIIDATQIKRNFNLTVQLL
                     EYGAPLLIGLNMIDVAHKRGIRIDHQRLMRQLHIPIIPVIARTGKGSDEVLNALADRH
                     VSRQRPLKIHYGDDVENLLTQLVKALPTTLSLAQRHYRFLTIQYLLNNPAVLRYLDEE
                     TLQQFETLTAQFKQFNTLDLEQHILTCRQQYIDIMLAEIVTYPEAERQHLTERIDALL
                     THKILGIPIFLGMMWLIFQLTFTWIGTPLSDQLDAFFGGPLTDQTVNIMDKLGIYPAL
                     QDLVTDGIIAGVGGVLVFIPQILVLFFFISLLEDSGYMARIAVIMDRLMEKFGLNGKS
                     FIPMIIGFGCNVPGIMAARSIEEEKERLTTILIAPFMSCSARLPVYGLFVAIFFAQHQ
                     ALVVLSLYVLGIVVALLVSWLLSKTVLKKDTSIFVIELPPYRLPSIKTLWRSTWEKGK
                     GFVKKAGTFIFAGSIVIWSLNYTGPSGMNVPIDQSFLHMIGAAIAPLITPLGFSSWQT
                     AATLIPGFLAKEVIISSMAIIFAVSEESLVATVSTHFTALSAYSFMVFILLYTPCLAT
                     VAAIRKETLSWKWTMLAVTYPFVIAYVLSLLVYQIGSHFI"
     gene            complement(6158..6394)
                     /locus_tag="PTC08_001913"
     CDS             complement(6158..6394)
                     /locus_tag="PTC08_001913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transport protein A"
                     /protein_id="HDK5683416.1"
                     /translation="MLHIGNAEIGKQYRVKALDTDNVHLKHRLRALGCVEGCQISVHQ
                     KGLFKGPCTLKVNGQHICIRNCDACEIRLEYAYE"
BASE COUNT         1999 a         1176 c         1288 g         1966 t
ORIGIN      
        1 gcttcactgt ataaatcata ataacgcaaa tcatcaaatt caaaagactc aggaccgcca
       61 tgtaacgaaa ataaaagttt ttgaggctta ctttctaaag gtttatgtac agttatagga
      121 taaggtttag aaaaataatc tgtatttatt ttttctcttt tatttttgtt atggctaaaa
      181 aaaacagttc catttttgtc tatatacccc cacttaatcc cctccttcat acttgtacct
      241 ttgatttaaa gaggagaatg tggttgttca atcatcgtcg ttttgatgag gccatattat
      301 tgacatcatt agtaacttga ttcaaaaaaa ttacatcata aaaaagtgga tagccgtaaa
      361 attatgacat tctacgccca tccactttat tttatgatgg tagttatata tgcgtttcat
      421 ctgctcatca taagggtgca ctgttttaag gctgctcagt ttttatatat caagcctatt
      481 caaagtcatt tgtttaatcg ttatcacatt gttaaatcaa tcggcatcac gatttttatt
      541 ttctgaatag caatttcaac aagcgacgta aaataaatgc aaggatgagt acaatgacga
      601 gaaatgcgag tgacgtcaat attggaaatg catgccaact tgagacgaca acagatttag
      661 attcatagat aagcggattt tcaactttta cggttggagg cccgtcgttt ttcgtaatga
      721 acttgcgtgg ataatcgaga tgtacttgac tatctttgac gacaagatga taaggtttag
      781 acatgtcttt cggcacgaca tcgtataaat cttctgtcac atagtacgat tttccatcaa
      841 ttttatgttt acctttagac aatatctttt tatagtcata ttgtgaaaac gtataattaa
      901 tggcactcgc gctcatcatg ttacgctgtt tctcgccacc gagatgttta taatctccag
      961 cgcccataat aatatggaaa atgcggaatt ttccacgttt tgtcgttaat gaattgttgt
     1021 agtctgcaat atcactcgaa cccgttttca atccatctgt gccaggtaag ctcatgttac
     1081 caccttctaa caaatcgtta aaggtatagt atgtgacacc gtgttgtgtc ggtgcaattt
     1141 gtttggtgaa atataaaatt ttaggtgtgt ctttcacaac atgctgggca agtatggcat
     1201 agtcgcgtgc tgaagatgtt gaagatgatt cgtgttggta tttctttggc gcgaattcca
     1261 ataataagcg attttctgca ccagtaggat tcacatagtg ggtgtgcgtc atacctagag
     1321 atttggcagt gtcattcatt ttatcgacaa agtctgatgt gctatctgaa acttgattgg
     1381 ctaaaatcag tgcagctgcg ttacttgaag cggagactgt aatctgaagc aattctgcaa
     1441 cggtgtatgt ttcaccagga taaagtttcg tattactcaa ctctggtaag gtggacatcc
     1501 ggtaatgttg gtcagtgatt tggaccgtgt cgtttaaaga taacttcttt tctttgacag
     1561 cttgtaacgt taagtacatt gtcatgagtt tggtcataga agcaggatac cattgttgtt
     1621 cgctttgaaa ctcatacaaa atttgtcctg tttgactgat gttgatcatg ccttcaggtt
     1681 gataagccca cgtaacagga taaccacttt gttgtgcaag ttcaaccggt gtgggtgtat
     1741 atgcacgtgc aaaaggtgtt ataatagtgg aagcgaagaa tacaaccaca atggacaata
     1801 ttattttttt catatgtatt cccccaatct aaaaaactat aaatgataaa caacaagatt
     1861 cattttacca caaagtttgt cgtttataaa tgttaatgca gactgatatg aggggcataa
     1921 gagaagatat gaaaccgagt tgagccgttg tggtcacttt gagaacaatc tgttgaaggg
     1981 taaaagtaga ggtaatcgta aatgcggtaa gactgccttc atagtgaatg aagactgagg
     2041 ggcgtcttat agcatcacta taacgaaaat aaaagaggta tgaagttatg aaagcacgca
     2101 acccacttgt atttttatta aagaaaattt catggccagt tggattaatt atcgtggccg
     2161 tgacgattgc ttcaataggt agtttgaccg gattattagt tcctttattt acagggcagg
     2221 tggtcgacaa atttactttt gaatcgatta gtcctgtatt tattattgca ctggtagcgg
     2281 tatttttagt gaatgccgtg ttaagtggtt tcggttacta tttacttaat aaaataggcg
     2341 aaaaaattat ttatgccatt cgttctgtgt tatgggagca tattatccac ttgaaaatgc
     2401 cgttttttga taaaaatgaa agcgggcaat tgatgagtcg tttaacagat gatacgaaag
     2461 taatcaatga ttttatatca caaaagttac cagggttttt tcccgcggtg attacgctca
     2521 ttgggtcatt aattatgctg tttgttttgg attggcaaat gactctcctt acatttatta
     2581 ccattcctat attcatatta gtgattgtgc cactcggtaa aattatgcaa aaaatatcaa
     2641 cgaatacgca aactgaaatt gcgaatttta gcgggctact cgggcgtgta ttgacagaaa
     2701 tgcgtttagt gaaagtagcc aatactgaga aactagaatt agataaggcg catagcaatc
     2761 ttaagacaat ttataacttg gggctgaaac aagcgaaaat tgcggccgtc gttcaaccga
     2821 tttcagggat tattatgctg attacgattg gtattattct aggttttgga ggcatgcgta
     2881 ttgcttcggg cgcgatttca gcggggacac tcgtagcgat gattttttac gttttaaact
     2941 tatcgatacc gttgatcaac ctttctacat tagtaacgga ttataaaaaa gcagtagggg
     3001 cgagccaacg catttatgaa attttacatg aaccacttga aaacatcgcc gcaccgaatt
     3061 tacaagatga gattccaact ggtgacttga aatttgatca tgtctacttt ggatatgatg
     3121 atacaccagt gcttaaagat gtgtcattta atgtattgcg tggcgaagtg actgcttttg
     3181 tagggccttc tggttcgggt aaaagcacat tgttcagttt gattgaacgg atgtatgaga
     3241 ttgatcaagg tggcatttat tatgatggta cttccattga tgcgctatct ttaacagatt
     3301 ggcgtagaaa aatcggttac gtcatgcaaa gtaatgcgat gatgaacgga acgatacgcg
     3361 ataatatttt atatggtatg gatcgagaag tgcctgaaga agaattgatt cactatgcaa
     3421 aacttgcgaa ctgtcatgaa tttattatgg aatttgaaca aggttacgac acaatcgttg
     3481 gagagcgcgg cttgaagctg tcaggcggtc aacgtcagcg catcgatatt gcacgaagct
     3541 ttgtgaaaaa tcctgacatt ctgttattag atgaggcaac tgcaaactta gatagtgaaa
     3601 gtgagcgtaa aattcaagaa gcattagata ttttaatgga aaaccgtacg acaatcgtca
     3661 ttgcacaccg tctctctaca attaaaaaag cgggtcagat tattttctta gaccatggcg
     3721 aagtaacagg cagaggacgt catgaagaat taatgcaaac acacgccatg tatcagcaat
     3781 ttgttgaaac ccaaaattta acacagcatc gagcagtaac agaacaaact gaaacagaat
     3841 gataacgaaa acaaaaagac tgggtacctg aaaccacttg aagcagtgcg ttttcaaccc
     3901 agtcttcttt attgtatagt caatcatttg tatcttcgct tacttatcct cactcaaaaa
     3961 ataggtgagc aacagaaacg aagatgtggg ttgggcccat cactgcaaat gtttcggtaa
     4021 actttcagtc ggacaaccct tactactttc acatgcacta cactttcctt gcttcgactt
     4081 tttgaaaaaa ctaagcatta cccaagttgc ataacctaat atcaatgcaa tcaataataa
     4141 attaatgaat aacgtcaatt tcaacgcctc ctatataaag tgcgaaccga tttgatagac
     4201 tagcaatgac aacacgtatg caatgacaaa ggggtacgtc acagcaagca tcgtccattt
     4261 ccatgaaagg gtttctttac gtatcgcagc cactgtcgct aaacatgggg tgtaaagtaa
     4321 aataaaaacc atgaatgaat aggcagagag tgctgtgaaa tgtgttgata cagtagcgac
     4381 gagactctct tcactgaccg caaaaataat ggccatggaa ctaatgataa cttctttcgc
     4441 taaaaatcca ggaatgagtg tcgcagcggt ttgccatgaa ctgaatccaa gtggtgtaat
     4501 cagtggtgca atagccgcac caatcatgtg taagaaactt tggtcgatag ggacattcat
     4561 accagatggg cccgtgtaat tgagtgacca aatcacaata gaacctgcaa aaataaatgt
     4621 acctgctttt ttaacgaacc cttttccttt ttcccaagta ctacgccata atgttttaat
     4681 tgaaggtaat cgatatggtg gtaactctat gacaaaaata gatgtatctt tttttagcac
     4741 cgttttagat agtaaccagc tcacgagtaa cgcaacaaca atgcctaata cgtatagact
     4801 taacacgaca agtgcttgat gttgtgcgaa gaaaatcgct acgaacaacc catatactgg
     4861 aagtcgcgca gaacatgaca tgaacggtgc aattaaaatg gtcgtcagcc gttctttttc
     4921 ttcttcgata ctgcgcgccg ccataatacc tggtacgtta caaccaaaac cgattatcat
     4981 cggaataaat gacttgccgt taaggccgaa tttttccatc aaccggtcca taatcactgc
     5041 aatacgcgcc atataacctg aatcttctaa taatgaaatg aagaagaaca gcactaaaat
     5101 ttgtggaatg aacacgagta caccgccaac acccgcaata ataccgtctg tcaccaagtc
     5161 ttgaagggca ggataaatac cgagcttatc cataatattg accgtttgat cggttaaagg
     5221 acctccgaaa aatgcatcca actggtcaga aagcggtgtc ccaatccaag taaacgtcag
     5281 ttgaaagatg agccacatca ttcctaaaaa gatagggata cccagtattt tatgtgtgag
     5341 caacgcatcg attcgttcag tcaaatgttg gcgctctgcc tcaggataag tcacaatttc
     5401 agcaagcatg atgtcaatat actgttgccg acatgtcaaa atatgttgtt caaggtcgag
     5461 cgtattgaac tgtttaaact gtgccgtcaa tgtctcaaac tgttgtagcg tttcttcatc
     5521 taaatatcgc aatacagctg gattattaag taaatattga atggttaaaa aacggtaatg
     5581 gcgctgtgct aatgaaagtg tggtaggtaa tgctttgaca agttgtgtta ataaattttc
     5641 aacgtcatca ccataatgga tttttaaagg tcgttgtcta gaaacatgac ggtcagcaag
     5701 ggcattgagc acttcatcgc tccctttacc ggtacgtgca ataacaggta taatcggaat
     5761 atgcaattga cgcattaaac gttgatgatc aatccgaatt ccgcgcttat gagccacgtc
     5821 aatcatgttc agaccgatga gcaatggcgc gccatactct aacaattgta cagttaaatt
     5881 aaaattgcgt ttaatttgag ttgcatcgat aatattgatc atgccgtcga atttttcatg
     5941 cagtaaataa tcggttacga cagtttcatc acgggaaatg ggaactaagt cgtaaattcc
     6001 tggtaagtcg attaaatgac cagaattttt cttaagttga ccgacctttt tgtctactgt
     6061 gacaccgctc cagtttccga catattcata tgaaccggtt agagcgttga aaagggatgt
     6121 ttttcctacg ttcggattcc ctaaaataca atatgcatta ctcataagca tattccaatc
     6181 taatctcgca agcatcacag ttacgaatac aaatatgttg gccgttcact tttaatgtac
     6241 aaggtccttt gaataatcct ttttgatgga cagaaatttg acatccttct acacaaccta
     6301 gagctcgtag acgatgtttt aaatggacat tgtctgtatc taaagctttg acacgatatt
     6361 gttttccgat ctcagcattt ccaatatgta acatacgcac acctacttat cgttaatgat
     6421 aatcatttt
//
LOCUS       DANHOL010000129         6313 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.130, whole genome shotgun sequence.
ACCESSION   DANHOL010000129 DANHOL010000000
VERSION     DANHOL010000129.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 6313)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6313)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6313
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.130"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(207..2666)
                     /locus_tag="PTC08_001914"
     CDS             complement(207..2666)
                     /locus_tag="PTC08_001914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit"
                     /protein_id="HDK5683417.1"
                     /translation="MLFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKEPEG
                     IAAKVLESFDITEDKVIEEVEKLIGHGQEQMGALHYTPRAKKVIELSMDEARKLQHNF
                     VGTEHILLGLIRENEGVAARVFANLDLNITKARAQVVKALGSPEMSNKNAQSAKSNNT
                     PTLDGLARDLTVIARDGTLDPVVGRNSEITRVIEVLSRRTKNNPVLIGEPGVGKTAIA
                     EGLAQAIVNNEVPETLKGKRVMSLDMGTVVAGTKYRGEFEERLKKVMEEIHHAGNVIL
                     FIDEMHTLIGAGGAEGAIDASNILKPALARGELQCIGATTLDEYRKHIEKDAALERRF
                     QPVQVNEPSVADTIAILKGLRDRYEAHHRINISDEAVEAAAKLSDRYVQDRFLPDKAI
                     DLIDEASSKVRLKSHTTPTNLKEIEQQIEQVKKEKDAAVHAQEFENAANLRDKQTKLE
                     KQYEEAKNEWQNHQGGQHTTLVAEDIAEVIAGWTGIPLTRLNETESERLLNLEDTLHE
                     RVIGQNDAVIAISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAEAMFGEE
                     DAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVILFDEIEKAHP
                     DVFNILLQVLDDGHLTDTKGRRVDFRNTVIIMTSNVGAQELQDQRFAGFGGSSEGQDY
                     ETIRKTMMKELKSAFRPEFLNRVDDTIVFHKLNKDELKEIVTMMVGKLTSRLSEQNIN
                     VRVTEAAKDKIAEEGYDPEYGARPLIRAIQKTVEDNLSELILEGKELEGKNVTVDYDG
                     ETFQYDIHERETNEDKEVTES"
     gene            complement(2678..3688)
                     /locus_tag="PTC08_001915"
     CDS             complement(2678..3688)
                     /locus_tag="PTC08_001915"
                     /EC_number="2.7.14.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein arginine kinase"
                     /protein_id="HDK5683418.1"
                     /translation="MMHNLDQHMSDWMKKVNAQPVIMSSRIRLARNLENYVHPLMFPS
                     EAEGHRVINEVQDVLTDLNVLRLDELDQLSKYKLVAKHLISPELTKQPASAVLLNEDE
                     SVSVMVNEEDHIRIQAMGNDLSLNELYQKASAIDDILDLTLQISYDEQLGYLTTCPTN
                     VGTGMRASVMLHLPGLSIMKRMNRIAQTINRFGFTIRGIYGEGSQVYGHIYQVSNQLT
                     LGKSEQEIIDALTELVDQIIHEELALRERLNEHNHTETLDRIYRSLGILKYSRLISVE
                     EASHRLSDIKLGVDLGILDMEDFRFNELMVAIQSPFLIDETDEQSIEAKRAEILRTYI
                     YK"
     gene            complement(3678..4208)
                     /locus_tag="PTC08_001916"
     CDS             complement(3678..4208)
                     /locus_tag="PTC08_001916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UvrB/UvrC motif-containing protein"
                     /protein_id="HDK5683419.1"
                     /translation="MKIDKRELDKQQNKHLEFHPIQAYDQSGYDQSDEQWHEGDDVEG
                     TFVIQQILQHLAAKHGLNVDQVVYREQKRCPNCQMTLKDIAHVGKFGCAQCYETFKED
                     VYDIVRRVQGGHIEHSGKCPKSSQHKRALKKQLEEKRARLELLVAQQAFEEAAIVRDE
                     IQALEQQSEVSQQDDA"
     gene            complement(4222..4683)
                     /locus_tag="PTC08_001917"
     CDS             complement(4222..4683)
                     /locus_tag="PTC08_001917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000551761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CtsR family transcriptional regulator"
                     /protein_id="HDK5683420.1"
                     /translation="MHNMSDIIEQYIKQLFEEAQDDVVEIQRANIAQRFDCVPSQLNY
                     VIKTRFTNEHGYEIESKRGGGGYIRITKVETKDQNNYIKRLMELIGPALSQQQALYII
                     DGLRENQLITDREAKMIAAVVDRETLKMDVASRDIIRANILKRLLPVINYY"
     gene            4848..6053
                     /locus_tag="PTC08_001918"
     CDS             4848..6053
                     /locus_tag="PTC08_001918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020363115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NupC/NupG family nucleoside CNT transporter"
                     /protein_id="HDK5683421.1"
                     /translation="MHILIGVIGIGVFLALAFIGSSDKKGIRWKYIGIMFVIQLILAY
                     ALLKTKIGITIVGGIATGFGYLLKQAGVGIDFVFGGLVNNGQMSFFLSVLLPIVFISA
                     LIGILQYTKILPLIINILGFLISKINGMGRLESYNAVAAAILGQSEVFISLKKQLPYI
                     TKQRLYTLTASAMSTVSASIIGAYFTLVQPKYVVTAVVLNLLGGFIIASIINPYKVDE
                     EEDKLLLEEEKKKQSFFEMLGEYILDGFKVAVIVGAMLIGYIALISLLNGLVGGLISL
                     ISGGALDWNFQTLIGFIFAPLAFLTGIPWSDAVEAGSIMATKLLSNEFVAMTELGKAS
                     GLSERSLGIVSVFLVSFANFSSIGIISGAIKSLNDEKGDMVARFGLKLLFGATLVSFV
                     SAAIAGFFL"
BASE COUNT         1725 a         1352 c         1083 g         2153 t
ORIGIN      
        1 agatattgat tttattcctt ttattaatat tacttttatc tgttaaaaat caataaggtt
       61 tcgattaatt cacacctcac gccaaacatc atcaactgac tcttattaag aacacagtcg
      121 actttgcaac attgcaaatt tcacacaaaa aaagcagcgg agacatctca aaaaagagaa
      181 tgccttcact gctttaatcg agtaacttat gattctgtga cttccttatc ttcattcgtt
      241 tcacgttcat gaatatcata ttggaatgtt tctccatcat agtctacagt cacattttta
      301 ccttctaact ctttaccttc taaaatcaat tcactcaagt tatcttcaac cgttttttgg
      361 atcgcacgaa tcaatggacg tgcaccatac tctgggtcgt agccttcttc agcaatcttg
      421 tctttcgccg cttctgtcac acgtacatta atgttttgtt cagaaagacg actcgtcaat
      481 ttgccgacca tcattgtaac gatttctttc aattcgtctt tatttaattt atggaaaaca
      541 atcgtgtcat ccacacggtt caagaactca ggacggaatg cacttttcag ttctttcatc
      601 atcgttttgc gaattgtttc atagtcttga ccttctgaac taccaccgaa acctgcaaaa
      661 cgttggtctt gaagttcttg cgcgccgaca ttggatgtca taataatcac tgtatttcta
      721 aaatccacac gacggccttt tgtatcagtc aaatgcccat catctaatac ttgtaaaaga
      781 atgttaaaga catctgggtg tgctttttca atctcatcaa acaagataac agaataaggt
      841 ttgcgacgta ctttttcagt caattgaccg ccatcatcgt gaccaacata tccaggaggc
      901 gccccaacaa gacgactcac cgcatgtttc tccatgaact cactcatatc aacacgaatc
      961 atcgcatctt cttcaccaaa catcgcttca gctaatgcac gtgcaagttc ggttttaccg
     1021 acacctgttg gccctaagaa gatgaagctt ccgattggac gtttcggatc tttcaagcct
     1081 gcacgcgcac ggcgtactgc tttagaaata gcgattaccg catcattttg tccgattact
     1141 cgctcatgca atgtgtcttc taaattcagt aaacgttctg actccgtttc attcaagcgt
     1201 gttaatggga tacctgtcca acctgcgatc acttcagcaa tatcttcagc aactagtgtt
     1261 gtatgttggc ccccttgatg attttgccat tcgttttttg cttcttcata ttgtttttca
     1321 agttttgttt gtttgtcacg taagtttgca gcattttcga attcttgtgc gtgcactgct
     1381 gcatcttttt cttttttcac ttgctcgatt tgttgttcaa tttcttttaa gttcgttggt
     1441 gttgtatggc ttttcaagcg cacttttgaa ctagcttcat caatcaagtc aatcgcttta
     1501 tctggtaaga aacggtcttg tacgtatcga tcacttaatt ttgctgccgc ttccaccgct
     1561 tcatctgaaa tattaattct atggtgcgct tcgtaacgat ctcgtaaacc ttttaagatt
     1621 gcaattgtat ctgccacgct tggttcattg acttgaacag gttggaaacg acgctcaagt
     1681 gcagcatctt tttcaatatg cttacggtat tcatctaaag ttgtcgcacc gatacattgt
     1741 aattcaccac gtgcaagcgc tggttttaaa atattagacg catcaatcgc accttctgca
     1801 ccacctgcac caatgagcgt atgcatttcg tcaatgaaca gaatcacatt gcccgcatga
     1861 tgaatttctt ccatcacttt tttcaaacgt tcttcaaatt caccacgata ttttgtacca
     1921 gccacaacag tccccatatc taatgacatg acacgtttac ctttcaacgt ttctggtact
     1981 tcgttgttga caattgcttg cgccaaacct tcagcaatcg ctgttttacc aacaccaggt
     2041 tcaccaatca acacaggatt attttttgtg cgacgactca acacttcaat cacacgtgta
     2101 atttctgaat tacgacctac aactggatct aaagtaccat ctctagcaat cactgttaaa
     2161 tcacgcgcta ggccatctaa tgtcggtgtg ttatttgatt ttgcagattg tgcattttta
     2221 ttagacattt ctgggctacc taacgctttc accacttgtg cacgtgcttt tgtaatattg
     2281 aggtctaggt ttgcaaatac acgtgcggca acaccttcat tttcgcggat taaacctaac
     2341 aagatgtgtt cagtaccgac gaagttgtgt tgtaacttac gtgcttcgtc catagaaagt
     2401 tcgattactt ttttggcacg tggtgtatag tgtaaagcac ccatttgctc ttgaccatgg
     2461 ccaatgagtt tttcaacctc ttcgatcact ttatcttctg taatgtcaaa gctttctaat
     2521 acttttgcag caatgccttc aggttctttc attaacccga gtaataaatg ttccgtccca
     2581 atattcgaat ggtttaaacg aattgcttct tcttgtgcat gcgcgagtac acgttgcgca
     2641 cgttctgtta atcttccaaa taacatatgc caacctccta tttatatata tatgttctta
     2701 aaatctctgc tcgttttgct tcaatagatt gttcatctgt ctcatctatc aaaaatggtg
     2761 actgtatcgc gaccattaat tcattaaatc gaaaatcttc catatctaaa atgcctaaat
     2821 cgacgcccaa cttaatatca cttaaacggt gggacgcttc ttccaccgaa attaaacgac
     2881 tatacttcaa tatacccaaa gaacgatata ttctatctaa tgtctcggta tgattgtgtt
     2941 catttaatcg ctcacgtaaa gccagttctt cgtgaataat ttgatcaact aattctgtta
     3001 aagcatcaat aatctcttgc tcactttttc ccaacgtcag ctgatttgaa acttgataaa
     3061 tatggccata aacttgtgag ccttcaccat aaatccctcg aatcgtaaag ccaaaacggt
     3121 taatcgtctg cgcaatgcgg ttcatccgtt tcataatgga taaaccaggc aaatgcaaca
     3181 tgacactcgc acgcatccct gtaccgacat tcgttggaca cgttgttaaa taaccgagtt
     3241 gctcgtcata actgatttgt aacgtaagat ctaatatatc atctatggca gatgcttttt
     3301 gataaagttc atttaatgac aaatcattgc ccattgcttg tatacgaata tgatcctctt
     3361 cattcaccat cacacttacc gactcatctt cattcaacag tactgcagat gccggttgtt
     3421 tcgtcaactc aggactgatt aagtgtttgg ctactagctt atatttactc aactggtcga
     3481 gctcatctaa gcggagtaca tttaagtctg ttaatacatc ttgcacctca ttaatgacgc
     3541 gatgtccctc agcttcagat ggaaacatga gtgggtgcac ataattttca aggttacgtg
     3601 ctaaacgaat acgcgaggac ataatgaccg gttgcgcatt cacctttttc atccaatcac
     3661 tcatatgttg gtctaaatta tgcatcatct tgttgggaca cctcgctttg ttgctcaagt
     3721 gcttgaatct catcacgcac aatcgccgct tcttcaaagg cttgttgcgc gactaataat
     3781 tcaaggcgtg cacgtttttc ttctagttgc tttttcagcg cacgtttatg ctgtgatgac
     3841 ttcggacatt tccctgaatg ttcgatatga ccgccttgga cacgtctcac aatgtcatac
     3901 acgtcttctt taaatgtttc gtaacattgc gcgcagccga atttgccgac atgtgcaatg
     3961 tccttcaacg tcatttgaca gttcggacag cgtttttgct ctcgataaac aacttgatcc
     4021 acattcagac catgttttgc tgccaaatgt tgcaaaattt gttgaatgac gaatgtgcct
     4081 tcaacgtcat caccttcatg ccattgttcg tcagattgat cataacctga ttgatcgtac
     4141 gcttgaatag gatgaaattc aaggtgtttg ttttgctgtt tatcaagttc acgcttatcg
     4201 attttcattg cacatcacct tctaataata attaattacg ggaagtaacc gttttaaaat
     4261 atttgcacgg ataatatctc tcgacgcgac atccattttt aatgtttccc gatccaccac
     4321 cgccgcaatc atttttgctt ctcggtccgt aattaattga ttttcacgca agccatcaat
     4381 aatatacaaa gcttgttgtt gagaaagggc cggaccaatc aactccatta aacgtttaat
     4441 gtaattgttt tgatctttcg tttcaacttt tgtgatccga atataaccac cgccgccgcg
     4501 tttactttca atttcataac cgtgttcgtt agtaaagcgc gtcttaataa cataattcaa
     4561 ctgagatggt acacaatcaa aacgttgtgc aatattggca cgttgaattt caactacatc
     4621 atcttgtgcc tcttcaaata attgcttaat gtactgttct atgatgtcag acatattatg
     4681 catggtatca ccccttttga ccatctttga ctatattata gaacccactt tgaccttttt
     4741 caaccaattt gattttaaat ttgataaata gttatgttac tgcttacatt tttgttgtat
     4801 gatagtctta gtaaaaatta tttagaaaaa atagaggtgg aacacacatg catattttaa
     4861 ttggggtcat cgggattggt gttttcttag ccctcgcttt tattggaagt tctgataaaa
     4921 agggcatacg ttggaaatac attggtatta tgtttgttat tcagctcatc ttagcatatg
     4981 ctttactgaa aacaaaaatt gggattacca ttgtaggtgg tatcgcaaca ggattcggtt
     5041 acttactcaa acaagccggt gtcggtattg attttgtttt cggtggtctt gtcaataacg
     5101 ggcaaatgtc atttttctta agcgttttat tacctatcgt tttcatttct gccttaattg
     5161 gtattttaca atatacaaaa atattgcctt taattattaa tattttaggt ttcttaatct
     5221 caaaaattaa tggcatggga cgtttagaat catacaacgc tgttgctgca gccatccttg
     5281 gacaatcaga ggtatttatt tcacttaaaa aacaattacc ttacattacg aagcaacgtt
     5341 tgtatacatt aacagcttcg gcgatgtcca ctgtgtctgc atcgattatt ggtgcgtact
     5401 tcacattagt acaacctaaa tatgtggtaa ctgcggtcgt ccttaactta ttaggtgggt
     5461 ttatcattgc ttccattatt aacccttata aagtggatga agaagaagat aagttattgc
     5521 ttgaagaaga aaagaaaaag caatccttct ttgaaatgtt aggggaatac attttagatg
     5581 gatttaaagt cgctgtaatc gtcggcgcga tgttaatcgg ttatatcgcc ctcatctcat
     5641 tattgaatgg acttgttggt ggtctcatta gcctcatttc tggcggcgca ttagattgga
     5701 acttccaaac attaatcggc tttatctttg caccacttgc tttcttaaca ggtattccat
     5761 ggagtgatgc agtagaagct ggctcgatca tggcaacaaa actattatct aatgagttcg
     5821 tagcgatgac tgaactcggc aaagcatctg gtttatcaga acgttcatta ggtatcgtgt
     5881 cggtattctt agtatcgttt gctaacttca gctcaatcgg tatcatctca ggtgctatca
     5941 aatcattaaa tgacgaaaaa ggcgacatgg tagcacgttt cggattaaaa ttattattcg
     6001 gtgcaacact cgtatcattc gtatccgcag caatcgcagg ctttttcttg taagctgcat
     6061 ctaaagtatg ggaaaagata aacaaatata acacatatta agagactgag tcatgatggc
     6121 tgagtctctt ttttgttgtg cattttcaaa ccattttagt tgggcgacag attcaattgt
     6181 taaagaagca ttttcatttt ttattatgaa catctcggat ttttagtgaa acatttaggc
     6241 agtattattt tgattgttaa agaaatgtcc atagtacgct aaaatatagt acaatttttc
     6301 tctattatca aat
//
LOCUS       DANHOL010000130         6131 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.131, whole genome shotgun sequence.
ACCESSION   DANHOL010000130 DANHOL010000000
VERSION     DANHOL010000130.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 6131)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6131)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6131
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.131"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            152..235
                     /locus_tag="PTC08_001919"
     tRNA            152..235
                     /locus_tag="PTC08_001919"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:186..188,aa:Leu,seq:caa)
     gene            831..1889
                     /locus_tag="PTC08_001920"
     CDS             831..1889
                     /locus_tag="PTC08_001920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit IIC"
                     /protein_id="HDK5683422.1"
                     /translation="MATKQINSKHFFSVILNAVGAGVVIALLPNAFLGELLKFFKDGQ
                     PILEMIYQVVLVIQSFMAFIIGALAAHAFKFPGPGVTFVGTSAMIGSGALQFKNGAFV
                     LHGIGDIINVMLIVMIACLMFILLSGKLGSLEIIVLPALIPVTAGMIGLMTLPYVSKV
                     TQSLGHLIHTFTELNPLIMSLLIAITYALLMVTPISLVAIATAISLTGLGSGAGNMGV
                     VAACVTFIMGSIKVNKLGVNIVLLFGAAKMMIPVYFKHPIISIPLIINGFVAGLIAYF
                     VGIQGTPMSAGFGYSGLVGPINAFNRLEGDPMMNIFLLLIAYFVIPFTVGWFVHQLSK
                     KVLPGYRDEIYHFEVLKD"
     gene            2075..3535
                     /locus_tag="PTC08_001921"
     CDS             2075..3535
                     /locus_tag="PTC08_001921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019164964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding
                     protein/permease"
                     /protein_id="HDK5683423.1"
                     /translation="MKYLGKLMTMMLIVVFSISGIPAKYDAQAASEDQWDVIKDRGEL
                     RVGLSADYAPMEFERTVNGEREYAGIDIELAKKIAKDNGVKLKIVNMQFDSLLGALKT
                     GKIDMIISGMTPTAERKKEVDFSDNYMTVDQKVVVRKKDKDKYKTLKDLAHHRIGAQK
                     QTTQEELAQKEIEGADVQSLTRLPEVILSLKSNKVDAIVMDSAVGKAYLEQNEELTFS
                     DASFADSKKQTAIAIPKDSPKLLKRVNQSIADVNDHNLLAKYEKIAADAMQDDGSFLT
                     KYGAFFLTGIKSTIAISLIGVVLGAVFGSMFALMKISTICPLKWFASAYIEFLRGTPL
                     LVQVFLVFFGTTAVLGLDISAFICGAIALVINCSAYIAEIIRAGINAVDKGQMEAARS
                     LGLSYSQTMKSVIMPQAIKKILPALGNEFVTVIKESSIVSVIGVSEIMFNAQVVQGAS
                     FDPFTPLLIAAVLYFILTFTLSRLMSFLEGRMSISD"
     gene            3528..4253
                     /locus_tag="PTC08_001922"
     CDS             3528..4253
                     /locus_tag="PTC08_001922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003246629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HDK5683424.1"
                     /translation="MIKISKLNKSYGQNEVLTGIDLEIAQGEVVAIIGPSGSGKSTLL
                     RCMNLLEVPTSGQVIFEGRDLTDMGTKVDELRQKMGMVFQNFNLFPHKKVIDNIMLAP
                     QLLKKGDAQQLKTRALDLLSKVGLADKAEAYPNQLSGGQKQRVAIARALAMDPDVLLF
                     DEPTSALDPEVVGEVLAVMKSLANEGMTMVVVTHEMDFAKNVSDRVVFMADGVVVEDG
                     PPHEIFENPQHERTQNFLKRVLN"
     gene            4409..5539
                     /gene="queG"
                     /locus_tag="PTC08_001923"
     CDS             4409..5539
                     /gene="queG"
                     /locus_tag="PTC08_001923"
                     /EC_number="1.17.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA epoxyqueuosine(34) reductase QueG"
                     /protein_id="HDK5683425.1"
                     /translation="MDVRGLKEEIIAYAHTIGINSIGFTTADPFDELKQKLVDYHAKG
                     YASGFEPSDIALRTEPKLSLPTARSIIAIAVGYPNKLKGAPKSVRGDRRGVFARASWG
                     QDYHSIMRRRLDDLAAFIQRKVPDVELMSMVDTGVLSDRAVAERAGLGFVGRNGFVIN
                     PDLGTWSYLGEMLVSIPFPPDDPLLDSCGDCTICVDRCPTGALVGNGQLNSQKCISFL
                     TQTKGYLPDEYRYKIGNRLYGCDTCQQVCPKNRGINTEQDDIHLEPEILKPRLVPLLK
                     MNNKTFKNQFGHLAGAWRGKKPIQRNAILALAHFKEETAIPDLKDVAETDPRPMIRAT
                     AFWAIGQILGEAAKDYVMSHYDNELEEVQVEMIKGLEMRRDE"
     gene            5539..6009
                     /gene="trmL"
                     /locus_tag="PTC08_001924"
     CDS             5539..6009
                     /gene="trmL"
                     /locus_tag="PTC08_001924"
                     /EC_number="2.1.1.207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (uridine(34)/cytosine(34)/5-
                     carboxymethylaminomethyluridine(34)-2'-O)-
                     methyltransferase TrmL"
                     /protein_id="HDK5683426.1"
                     /translation="MPIHVVLYQPEIPANTGNIARTCAATDTHLHLIRPLGFSTDDKM
                     LRRAGLDYWKYVSITYYDNIESFFEQTEGQYFLLTKFGSKNHTSQDFSDVDQNYYFIF
                     GKETTGLPDWVKDKYDNTALRIPMNENVRALNLSNTAAILVYEALRQQNYPNLQ"
BASE COUNT         1927 a          938 c         1333 g         1933 t
ORIGIN      
        1 attacgaatg ttaatacgct tgttgacttt taagtcacat tgaattaatc tgtttataga
       61 tgttttcgag aatttttcaa aatcccgcga agctcaaacg agttttgcgc gtatgaaagt
      121 ttaggaaaat gtataaaatc aataatagtg ggccggtgtg gcggaattgg cagacgcgcg
      181 ggactcaaaa tcccgtgtct tcacagacgt gtcggttcga ccccgaccac cggtactaat
      241 aaccataatt acacaccaaa gcacatcaga aaccctgtta ttacggggtt tctttttatt
      301 tatacaccat agaatatcaa aattttggtc acacattgga cacgattgct acattgtatg
      361 tccaatgtgt ccaagtatta tagcgcattt aatagctcaa attaactggc acgaaaatgg
      421 cacgataacg ccttggtgtg cggcacgtga aacatctttg cacgttattc ttaataaatg
      481 ttcttaagcg catgtttgag cctgattttt ttatgtattc tatcattgag tcacatcgat
      541 aaattgacca tgtttttcta accgtgattg ttatacgaca aaaagcattg attatttcac
      601 tattttagcc tttgtgtaat caaagtttaa agaaaatggt cattgcaatt ttcactatct
      661 ctctcatgca aagatagttg atctttttcc aattttctac taaaatccac ctaatattca
      721 taacacttta aagtattgac gaaaatttta agaaattttc agaatactgt tgtaccataa
      781 gttcacttat attatgatta acctattctg ataagcggag ggttgcgtag atggcgacaa
      841 agcaaattaa cagcaaacat ttttttagcg ttattttaaa tgctgtaggg gcaggtgtgg
      901 taattgcgtt acttcctaat gcctttctag gtgaattgtt gaagtttttt aaagacggtc
      961 aacccattct tgaaatgatc tatcaagttg ttttggttat ccaatcattt atggcattta
     1021 ttattggggc acttgctgca catgccttta aatttccagg tccaggggta acatttgtag
     1081 ggacttctgc gatgattggt tcaggagcgt tacagtttaa gaatggtgcg tttgtgttac
     1141 atggcattgg ggatatcatt aatgtcatgc tcattgtgat gattgcgtgt ctcatgttta
     1201 ttttattgtc tggcaaatta ggatcattag aaattatcgt gttacccgcg ttaattcctg
     1261 tgactgcggg aatgattgga cttatgacat taccttatgt gagtaaagta acacaatcat
     1321 taggacattt aattcacacg tttactgaac ttaatccatt aattatgagt cttttaattg
     1381 cgattacata tgccttattg atggtgacac cgatttcact tgtagcgata gcaacggcaa
     1441 tatctttaac aggtttggga agtggtgccg gtaatatggg tgttgtagcg gcgtgtgtta
     1501 cgtttataat gggatcgata aaggtcaata aactaggagt gaatatcgta cttttatttg
     1561 gtgcggctaa aatgatgatt cctgtttatt tcaaacatcc tattattagc atcccgttaa
     1621 tcatcaatgg tttcgtggca ggtctgattg catactttgt gggcatacaa ggtacaccga
     1681 tgtcagcagg ttttggctat tcagggctcg ttggaccgat taatgcgttc aaccgtttag
     1741 aaggagatcc gatgatgaat attttcttat tattgattgc ctatttcgtg attcctttta
     1801 cagtaggatg gtttgtacat caattgagta aaaaagtatt gccaggttat cgagatgaaa
     1861 tttatcattt tgaagtactg aaagattaaa tgtgagccgt catatatgaa tttgaaatga
     1921 atcatagcat aatgaataaa acatcaatca acgatacaaa gttgattgat gttttttgtt
     1981 gtttagaagg ttaatgaaaa attttgaaaa ttattattgc ataaacttac atataaatgt
     2041 ataataatca atattatcgg gaggaggcag tgtaatgaag tatttgggga aactgatgac
     2101 aatgatgtta atcgtcgtat ttagtatttc gggaattcct gcgaagtatg atgcccaagc
     2161 tgcaagtgag gatcagtggg atgtcattaa agatcgtgga gaattgagag tgggactatc
     2221 tgcagactat gcgccaatgg aatttgaaag aacagtgaat ggtgaacgag aatatgcagg
     2281 tatcgatatt gaattagcca aaaaaattgc gaaagataat ggtgttaaat taaaaatcgt
     2341 caatatgcag tttgatagtt tgcttggtgc attaaaaact ggaaaaatcg acatgattat
     2401 ttctgggatg acaccaacag ctgaacgtaa aaaagaagtg gatttttccg ataactatat
     2461 gacagttgat caaaaagtcg ttgttcgtaa aaaggataaa gataaatata aaacgttgaa
     2521 agatttagcg catcatcgta ttggggcgca aaaacaaacg acgcaagaag aattagcgca
     2581 aaaggaaatt gaaggtgcag atgtacaatc gttaacacgt ttgcctgaag tcattttatc
     2641 tctcaaaagt aacaaagtag atgcgattgt gatggatagt gctgtaggta aggcgtattt
     2701 agaacagaat gaagaattaa cgttctcaga tgcatcgttt gcagattcaa aaaaacagac
     2761 tgcaattgcg attccgaaag attcacctaa gttattaaaa cgagtaaatc aatctattgc
     2821 agacgtcaat gatcacaatt tgcttgctaa atatgaaaaa attgctgctg atgcaatgca
     2881 agatgatggt agctttttaa caaaatatgg ggcgtttttc ttaacaggta ttaaaagcac
     2941 aattgccatt tcattaatcg gagttgtatt aggcgcagtg tttggttcca tgtttgcgtt
     3001 gatgaaaatt agtacaattt gcccgttaaa atggtttgct tcagcgtata tcgagttttt
     3061 acgtggcaca ccgttactcg tacaagtctt tttagtattc tttggtacaa cagcagtatt
     3121 aggtttagac atttcagcat ttatttgtgg ggccatcgcg ttagtgatta actgctcggc
     3181 ttacattgca gaaattattc gtgcaggaat taatgccgta gataaaggtc aaatggaggc
     3241 agcacgtagt ttaggtttaa gctacagtca aacgatgaag tcagttatta tgccgcaagc
     3301 gattaaaaag atattgcctg cattagggaa tgagtttgtg acagtgatta aagaatcttc
     3361 tatcgtttct gtaattggtg tgagtgaaat tatgttcaat gcacaagttg tacaaggtgc
     3421 atcatttgat ccattcacgc cattgttaat tgccgctgta ttgtacttta ttttaacatt
     3481 cacgctgtca cgtttaatga gctttttaga agggagaatg agtatcagtg attaaaattt
     3541 caaagttaaa taaatcgtat ggtcaaaatg aagtgttaac aggtattgat ttagaaattg
     3601 cacaaggtga agtggtcgcg atcattggtc cttctggaag cgggaaaagt acattactga
     3661 gatgtatgaa tttattagaa gttcctacat cagggcaagt catttttgaa ggtcgtgatt
     3721 tgactgatat gggcactaaa gtagatgaat tacgtcaaaa aatgggcatg gtatttcaaa
     3781 acttcaattt atttccacat aaaaaggtga ttgataatat tatgctagcg ccacaattat
     3841 tgaaaaaagg ggatgcacaa caattaaaaa cacgtgcatt ggacttatta tcaaaagtag
     3901 gtttagcaga taaagcagaa gcttatccga atcaattatc aggtggacaa aagcaaaggg
     3961 ttgcgattgc gcgtgcgttg gcgatggatc ctgacgtgtt gttatttgac gaacctacat
     4021 ccgcattaga tcctgaggtg gttggcgaag tattagcagt tatgaaatca ctcgctaatg
     4081 aagggatgac catggttgtc gtgacgcatg aaatggattt tgcgaaaaat gtgagtgatc
     4141 gtgttgtatt tatggcagat ggtgtggtgg tagaagatgg accaccacat gaaatttttg
     4201 aaaatccgca acatgaacgt acacaaaatt tcttgaaacg tgtgttaaac taaatatcaa
     4261 tgaaagggct aggaatttat tgattccggc tcttttttag ttgatgcttc aaatgatgta
     4321 aatgagattc caagcttcta tggaataatt caacgcaatg acagtcagat atgttaaaat
     4381 agtatggtga ttttaaagag gtgacatgat ggatgtacgg ggattgaaag aagagataat
     4441 cgcatatgcg catacaatag gtatcaatag tattggtttt accactgcag atccttttga
     4501 tgaattgaaa caaaaacttg tcgattatca tgcaaaaggc tatgcatcag gttttgagcc
     4561 gtctgatatt gctttacgta cagagccgaa attatcatta ccgactgcac gttcaattat
     4621 tgcgattgct gttggatacc cgaataaatt aaaaggtgcg cctaaaagtg ttcgaggtga
     4681 tcgtcgaggt gtgtttgcac gcgcatcatg gggacaagat taccattcga ttatgcggcg
     4741 acgtttagat gatttggctg cttttataca acgtaaagtg cctgatgtag agctcatgtc
     4801 aatggtggat acgggcgtgc tatctgaccg tgcagttgca gaacgtgcgg ggcttggatt
     4861 tgtaggacgt aatggtttcg tcattaatcc tgacctaggg acgtggtcat atttaggaga
     4921 aatgttagtg agtattccat ttccaccaga tgatccactc cttgatagtt gtggagattg
     4981 tacgatttgt gttgatcgtt gtcctacggg cgcgctcgtt ggtaatgggc aattgaacag
     5041 ccaaaaatgt attagctttt taacgcaaac gaaaggctat ttaccggatg aatatcgtta
     5101 taaaatcggt aatcgtctgt acggttgtga tacgtgtcaa caagtttgtc cgaaaaatcg
     5161 aggtattaat acggaacaag acgatataca tctagagcca gaaattttaa aaccacgatt
     5221 agttccatta ctgaaaatga ataataagac gtttaaaaat caatttggcc atcttgctgg
     5281 tgcgtggaga ggtaaaaagc cgattcaacg gaatgcgatt cttgcactgg cacactttaa
     5341 agaagaaacg gcaattcccg atttaaaaga tgtggctgaa acagatccga gacctatgat
     5401 tcgtgcgaca gccttttggg caatcggtca aattttaggt gaggccgcta aagattatgt
     5461 gatgtcacat tatgataatg aacttgaaga agtccaagtc gagatgatta aaggattaga
     5521 aatgaggaga gatgaataat gccaattcat gtagttttat atcaaccaga aattcctgcg
     5581 aatacaggga atattgcacg gacatgtgca gcgactgaca cacatttaca tttaattcgt
     5641 ccactaggtt ttagtactga cgataaaatg ttgcgacgtg ccggcttaga ttattggaaa
     5701 tatgtatcga ttacttatta cgacaatatt gaatcatttt ttgaacaaac agagggtcaa
     5761 tattttttac tgacaaagtt tgggtctaaa aatcatacgt cccaagattt ttcggatgtt
     5821 gatcaaaatt attactttat ttttggtaaa gaaacaactg gattaccaga ctgggtgaag
     5881 gataagtatg ataatacagc gttacgcatt ccaatgaacg aaaatgtacg tgcactgaat
     5941 ttatctaata ctgcagcaat tctagtttat gaggcgttaa gacaacaaaa ttatccaaat
     6001 ctacaataga tagggatgaa tttcatagca tggttcatag tttgaggttg ggacaagaac
     6061 aaatgtgtaa aaaagattat aataacgata acggagaacc ttccgaatgt tcctcatttt
     6121 ttaatgtttt a
//
LOCUS       DANHOL010000131         6089 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.132, whole genome shotgun sequence.
ACCESSION   DANHOL010000131 DANHOL010000000
VERSION     DANHOL010000131.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 6089)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6089)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6089
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.132"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(1..2315)
                     /locus_tag="PTC08_001925"
                     /pseudo
     CDS             complement(1..2315)
                     /locus_tag="PTC08_001925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728923.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fibrinogen-binding adhesin SdrG C-terminal
                     domain-containing protein"
     gene            2313..3122
                     /locus_tag="PTC08_001926"
                     /pseudo
     CDS             2313..3122
                     /locus_tag="PTC08_001926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015543625.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="primase C-terminal domain-containing protein"
     gene            3469..3639
                     /locus_tag="PTC08_001927"
     CDS             3469..3639
                     /locus_tag="PTC08_001927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000713595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683427.1"
                     /translation="MKKFIYRVLENDEVVAIFNEQQYAQDFIAYEKTISDKQFEIEKV
                     DIADWLLQPREF"
     gene            3653..4269
                     /locus_tag="PTC08_001928"
                     /pseudo
     CDS             3653..4269
                     /locus_tag="PTC08_001928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002295591.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
     gene            4269..>6089
                     /locus_tag="PTC08_001929"
     CDS             4269..>6089
                     /locus_tag="PTC08_001929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000108743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase 3"
                     /protein_id="HDK5683428.1"
                     /translation="MSTVILAEKPSQALAYASALKQSTKKDGYFEIKDPLFTDETFIT
                     FGFGHLVELAEPGHYDEKWQNWKLESLPIFPDRYDFEVAKDKGKQFKIVAELLKKANT
                     IIVATDSDREGENIAWSIIHKANAFSKDKTFKRLWINSLEKDVIRSGFQNLQPGMNYY
                     PFYQEAQTRQIADWLIGMNASPLYTLNLQQKGVQGTFSLGRVQTPTLYLIFQRQEAIE
                     NFKKEPFFEVEASIKVNQGSFKGVLSPTQRFKTQEELLAFVSSKQAKIGNQEGIIADV
                     QTKEKKTNSPSLFSLSSLQSKVNQLYKATASQTLKAMQGLYEAKLLSYPRTDTPFITE
                     NEFAYLKANFGKYSGFLGLDLEMVQTEPRKRYVDGSKVQEHHAIIPTKQVPTESALAK
                     MDDLQRKIYALVVKTTVAMFLPDYLYEETKIQTKVADLLFQSIGKTPKQEGWKILFKQ
                     QTKEEKEDVQTLPLVIIGERAEVGVKSVEKETQPPKAFTEGTLLTAMKTANKTVDDEE
                     AIKILQEVEGIGTEATRASIIEALKQKEYIQVIKNKLVVTEKGKLLCQAVESQHLLTS
                     AEMTAKWETYLKKIGKREGNQENFITNIKKFIVHLLEAVPN"
BASE COUNT         1939 a          995 c         1217 g         1938 t
ORIGIN      
        1 ttgtgtgtaa caggttcttt gtagaaaccg ctatcgattg ttaagtcatc gttaccttcg
       61 actaaaataa gggaagatgt cccattagag tcagtgctga ctctgccttg gcctgtttgt
      121 gtcggtgtat aaccttcagg cgtttcaaat tcaattgtat attcgccttc tttaactttt
      181 tcgaataagt aattcccttt atcatcagtc gtacgtgtat ccacaacgtt accatccgcg
      241 tcttttaaag tgaccttaac gttagcgata cctggttcat tttggtcttg gatgccatct
      301 ttatttaagt cttcccaaac tttgtcgccg acgttgtgtg ttggtgtttc agtttggtaa
      361 aaaccttggt cgatagttaa gttgttccca tcactaatga cagcttgtac atttgtagga
      421 ccatcagagt caagggcgtc attaccttgg ttggatggac ttgcagcata gccttccggt
      481 gtttcaaaac ccacttgata attaccattt tttaaattat caaagatata tttaccattc
      541 gtgtttgtat aagttgtatc caaaatgttg ccatcaagat cttttaaagt aacctttaca
      601 tcagcaatac cagtttcacc ttgatcttgg ataccatttt tattcacatc attccaaact
      661 ttgtcgccta attgatatga tgcttcattt ccgtcggctg taccaccaga agagcttttc
      721 acaatatcgt tatcccaagt aatatagtta tattgaccat atcggttttg agtggccata
      781 atagcacgca agtttaaatc ctctttagaa tccaaatttt ctttgctcgt cactttaacg
      841 atatagcgtt gcccatttaa gtttccaaag taaatatctg ccaaattatt atcacgataa
      901 acaatattaa attgttttgt gacatcttca tattcactgt cattcacacc gaaactacta
      961 ttaagtggtt gaccatcagc aacttttaaa atcttgatct gcgttgtatc tggtttcact
     1021 tgcccattac tcttagttgg atcaacttgg aacccttgaa ctcttacaac tgtaccgttt
     1081 gccgtttttt gtaatgggtt gacataaatg tattgatcat attccccagt tttaggatct
     1141 tctgaagtga tcattgattt taagttagaa tcaccttcac tgtaatattg accgtaattc
     1201 actttaattt gtgtatctaa agattcgcct gcaatgtcgt attttaatgg atatgtttga
     1261 gaatctgttg ccactttacg atccataaat tgagtcaagt taaacgaacc ggacacattt
     1321 tctaaattat taacgacatt agtgaacgtg tatgtcatag tatggttggc aacatcatat
     1381 tcacctaaag ccacaacttc acctttttga tttgtaattt tttctctaaa gtcaggtgaa
     1441 tggcgcgtgt caccaaaagt attgacagtg tcaggcattt ttacagtaaa gtagtcacct
     1501 tctttaacag tcccgtttac gttaaagtta ctttttaaat aaaagtttcc tgagttgttt
     1561 ggctcgatat aagattcagt tattttcata tttgatgctg ttactttgtc atttacgttt
     1621 gtcccaccag ctgcaacagc agtaggttga cttgcactga ctgcgcgaag ttgagttgta
     1681 cctttaatgt cttttaattg tgcaggtgct tttttgtttg cgactgttgt atttgttggt
     1741 gcttttgtcg tttcagtttg attggatgtt gattcagtag gttgttcgtt taaagttgtt
     1801 tgagaagcag ttgtttcact attttttaat tctgttgaag gtcgattgtc ttctgatgtt
     1861 tctggtgaag gtactgtcga tgtaggatct tgttgaggtg tatttgaaac ttgtgaatca
     1921 gaagttgtat ctgctttagg ttgttcattt acttgagatt cactgttagt tgtgttttct
     1981 ttttctgctt cttgatttga taggtttgct gatgagtcac tttgcaatgc ttcatttttt
     2041 gcttcttttg tttgagcaat gtcagcgtct ttcgatgttg tttcatcttg tgctgcactg
     2101 tctttaaatt ctgatgatgc attatctgga gtttgctcaa cttgtgttgc ttctttttca
     2161 ttcacttctt gattttgcgt tggttcggta tcactttttg attgttctgt tgtaggtgtt
     2221 gaatcatctg tagaaagtgc attcgctttt gcttgtgtat catcttgttt ttctgtcgac
     2281 acttcattgg tatcgccttg gtcttgtaat tgggctttac tcgttcaagt ctaacggttt
     2341 taagcggtac agaaggcaaa aaacaagtag atgaaccctg gtttaatctc ttattgcacg
     2401 aaacgaaatt ttcaggagaa aagggtttag tagggcgcaa tagcgttatg tttaccctct
     2461 ctttagccta ctttagttca ggctattcaa tcgaaacgtg cgaatataat atgtttgagt
     2521 ttaataatcg attagatcaa cccttagaag aaaaagaagt aatcaaaatt gttagaagtg
     2581 cctattcaga aaactatcaa ggggctaata gggaatacat taccattctt tgcaaagctt
     2641 gggtatcaag tgatttaacc agtaaagatt tatttgtccg tcaagggtgg tttaaattca
     2701 agaaaaaaag aagcgaacgt caacgtgttc atttgtcaga atggaaagaa gatttaatgg
     2761 cttatattag cgaaaaaagc gatgtataca agccttattt agcgacgacc aaaaaagaga
     2821 ttagagaagt gctaggcatt cctgaacgga cattagataa attgctgaag gtactgaagg
     2881 cgaatcagga aattttcttt aagattaaac caggaagaaa tggtggcatt caacttgcta
     2941 gtgttaaatc attgttgcta tcgatcatta aattaaaaaa agaagaacga gaaagctata
     3001 taaaggcgct gacagcttcg tttaatttag aacgtacatt tattcaagaa actctaaaca
     3061 aattggcaga acgccccaaa acggacccac aactcgattt gtttagctac gatacaggct
     3121 gaaaataaaa cccgcactat gccattacat ttatatctat gatacgtgtt tgtttttctt
     3181 tgctgtttag tgaatgatta gcagaaatat acagagtaag attttaatta attattaggg
     3241 ggagaaggag agagtagccc gaaaactttt agttggcttg gactgaacga agtgagggaa
     3301 aggctactaa aacgtcgagg ggcagtgaga gcgaagcgaa cacttgatct tttaagttgc
     3361 tatcatttat aggtcaatag agtatactta tttgtcctaa tatgatttta gtagtatgat
     3421 tgacttggtg aataggtcat ttaagttgag cataatagga ggagtaaaat gaaaaaattt
     3481 atttatcgag ttttagaaaa tgacgaagtg gtggctattt ttaatgagca acaatatgcg
     3541 caagatttta tcgcttacga aaagacaatt tctgataagc aatttgaaat tgaaaaagta
     3601 gatatagctg attggttatt gcaaccgaga gaattttaga ggttggttga aaatggctaa
     3661 aattggttat gcacgtgtca gtagcaaaga acagaactta gatcggcaat tacaagcgtt
     3721 acagggcgtt tctaaggtct tttcagacaa attaagcggt caatcggtcg aacgcccaca
     3781 attacaagct atgcttaact atattcgtga aggggatatt gttattgtta ctgaattaga
     3841 tcgattagga cgaaataata aagaattaac agaattgatg aatcaaattc aaattaaggg
     3901 ggcaaccctg gaagtcttaa atttaccctc aatgaatggt attgaagatg aaaatttaag
     3961 gcgtttgatt aatagccttg tcattgaatt gtacaagtat caagcagaat cagaacgaaa
     4021 aaaattaagg aacgtcaggc acaaggaatc gaaattgcta agaaaaaagg caaattcaaa
     4081 ggtcgtcagc ataaatttaa agaaaatgat ccacgtttaa agcatgcttt cgatttgttt
     4141 ttgaatggtt tatccgataa agaagttgaa gaacaaactg gaatcaatcg ccgaacgttt
     4201 agaaggtatc gagcaagata taacgtgaca gtcgatcaaa gaaaaaacaa tgaaaagagg
     4261 gatagttaat gagtacggtt attttagctg aaaaaccaag ccaggcatta gcctacgcaa
     4321 gtgctttaaa acaaagcacc aaaaaagacg gttattttga gatcaaagac ccactattta
     4381 cagatgaaac gtttatcacc tttggttttg ggcatttagt ggaattagca gaaccaggtc
     4441 attatgacga aaagtggcaa aattggaaac ttgaatcttt gccgattttt cctgatcgat
     4501 acgattttga agttgcaaaa gataagggaa agcagtttaa aattgttgca gaacttctca
     4561 aaaaggcaaa tacaattatt gttgcaacag atagcgacag agaaggtgaa aatatcgcct
     4621 ggtcgattat ccataaagca aatgcctttt caaaagataa aacatttaaa agactatgga
     4681 tcaatagctt agaaaaagat gtaatccgaa gcggttttca aaatttgcaa cctggaatga
     4741 attactatcc cttttatcaa gaagcgcaaa cacgccaaat tgccgattgg ttgatcggca
     4801 tgaacgcaag ccctttgtat acgttaaatt tacaacagaa gggcgtacaa ggtacatttt
     4861 cactaggacg tgttcaaacg cccaccttat accttatttt tcagcgccag gaagccatag
     4921 agaattttaa aaaagaacct tttttcgagg tggaagctag tataaaagta aaccaagggt
     4981 cgtttaaggg cgttctaagc cccacacagc gttttaaaac ccaagaggag cttttagctt
     5041 ttgtttcttc taaacaagct aaaataggca atcaagaggg gataattgct gatgttcaaa
     5101 ccaaagagaa gaaaacgaat agtccgagtt tgttttcttt aagtagtttg caatcaaaag
     5161 tcaatcagct ttataaagcg acagcgagcc aaactttaaa agctatgcaa ggactgtatg
     5221 aagcaaaatt attgagttat ccaagaacag atacaccatt tattacagag aacgaatttg
     5281 cttatttaaa agcgaatttt ggcaaatata gcggtttttt aggacttgat cttgaaatgg
     5341 ttcaaacaga gcctagaaag cgttatgtgg acggtagtaa ggtacaggaa caccacgcca
     5401 ttatcccaac aaaacaagta cctaccgaat ctgcattagc gaaaatggac gatttacaac
     5461 gaaaaattta tgctttagtc gttaaaacga ccgttgccat gtttttacct gattacttgt
     5521 atgaagaaac caagatacaa acgaaagtag ctgatttgct gtttcaatcg atcggaaaga
     5581 caccaaagca agaagggtgg aaaattcttt tcaaacaaca aaccaaagaa gaaaaagagg
     5641 acgttcaaac gttaccactc gttatcattg gcgaacgtgc cgaagttggt gttaagagtg
     5701 ttgaaaaaga aacgcaaccg ccaaaagctt ttacagaggg tacattatta actgctatga
     5761 aaacggcgaa taaaacggtt gatgatgaag aagcaatcaa gattttacaa gaagttgagg
     5821 ggattggaac agaagcgaca agagcaagta ttattgaagc gttaaaacaa aaagaatata
     5881 tccaagtgat taagaataag cttgttgtaa ctgaaaaagg aaaattattg tgccaggcag
     5941 ttgaaagtca gcacctttta acgagtgctg aaatgacggc taaatgggaa acgtatttaa
     6001 aaaaaatcgg taaaagagaa ggcaatcaag agaactttat tacgaatatc aaaaaattca
     6061 ttgttcattt actggaagct gtacctaac
//
LOCUS       DANHOL010000132         6077 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.133, whole genome shotgun sequence.
ACCESSION   DANHOL010000132 DANHOL010000000
VERSION     DANHOL010000132.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 6077)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6077)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6077
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.133"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            75..212
                     /gene="rpmH"
                     /locus_tag="PTC08_001930"
     CDS             75..212
                     /gene="rpmH"
                     /locus_tag="PTC08_001930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000240855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L34"
                     /protein_id="HDK5683429.1"
                     /translation="MVKRTYQPNKRKHSKVHGFRKRMSTKNGRKVLARRRRKGRKVLS
                     A"
     gene            386..733
                     /gene="rnpA"
                     /locus_tag="PTC08_001931"
     CDS             386..733
                     /gene="rnpA"
                     /locus_tag="PTC08_001931"
                     /EC_number="3.1.26.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012664032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P protein component"
                     /protein_id="HDK5683430.1"
                     /translation="MEKAYRIKKNADFQLIYRKGKSVANRQFVVYTYETQTLTHFRLG
                     ISVSKKLGNAVTRNRIKRSIRECFKVHKEDILPKDIIVIARFPAKTMSTAEIQKSLEH
                     VLKIAKVFNKRIK"
     gene            868..2289
                     /gene="mnmE"
                     /locus_tag="PTC08_001932"
     CDS             868..2289
                     /gene="mnmE"
                     /locus_tag="PTC08_001932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000393777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis GTPase MnmE"
                     /protein_id="HDK5683431.1"
                     /translation="MKRNIVLKGGTSIVEQLDTITSISTPMGEGAIGIVRLSGHDAVE
                     IADKLYKGKHLLKDVPTHTINYGHIIDPETEEVVEEVMVSVLRAPRTFTREDIVEINC
                     HGGILTINRVLELTMTYGARMAEPGEYTKRAFLNGRIDLSQAEAVMDFIRSKTDRASK
                     VAMNQIEGRLSDLIKRQRQSILEILAQVEVNIDYPEYDDVEDATTEFLLERSQEIKQE
                     IQKLLDTGVQGKIMREGLSTVIVGKPNVGKSSMLNNLIQDNKAIVTEVAGTTRDVLEE
                     YVNVRGVPLRLVDTAGIRETEDIVERIGVERSRKALSEADLILFVLNYNEPLTEDDRK
                     LYEVIKNEDAIVIINKTDLEQRLDLAEVETMVGDMPIIQTSMLQQQGIDELEIQIRDL
                     FFGGEVQSQDMTYVSNSRHISLLKQAKNAIQDAIDAAEMGVPMDMVQIDLTRTWEILG
                     EIIGESASEELIDQLFSQFCLGK"
     gene            2308..4182
                     /gene="mnmG"
                     /locus_tag="PTC08_001933"
     CDS             2308..4182
                     /gene="mnmG"
                     /locus_tag="PTC08_001933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002499187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis enzyme MnmG"
                     /protein_id="HDK5683432.1"
                     /translation="MVKSFDVIVVGAGHSGIEAGLASARRGAHTLMLTINLDNIAFMP
                     CNPSVGGPAKGIVVREIDALGGQMAKTIDKTHIQMRMLNTGKGPAVRALRAQADKVLY
                     QQEMKRILEDEDNLEVMQGMVDELIIEDGEVKGVRTNIGTEYRAKAVILTTGTFLRGE
                     IILGNLKYSSGPNHQLPSITLADHLRELGFEVVRFKTGTPPRVNAKTIDYSKTEIQPG
                     DDVGRAFSYDTTEYILDQLPCWLTYTNGETHQVIDDNLHLSAMYSGMIKGTGPRYCPS
                     IEDKFVRFNDKPRHQLFLEPEGRNTNEVYVQGLSTSLPEEVQRQMLATIPGLEKADMM
                     RAGYAIEYDALVPTQLWPTLETKMIKNLYTAGQINGTSGYEEAAGQGLMAGINAAARV
                     LGKEETILRRSDAYIGVLIDDLVTKGTNEPYRLLTSRAEYRLLLRHDNADLRLTDLGH
                     ELGLISDERYERFNTKRQQITDEMARLEQIRVKPSERVQQIIEEKGGSRLKDGILAKE
                     LLRRPEMTYETIIEILEEERQLPADVEEQVEIQTKYEGYITKSLQQVDKVKRMEQKKI
                     PEDLDYSQIDSLATEAREKLAEVKPLNIAQASRISGVNPADISILLVYLEQGKIQRVK
                     "
     gene            4183..4902
                     /gene="rsmG"
                     /locus_tag="PTC08_001934"
     CDS             4183..4902
                     /gene="rsmG"
                     /locus_tag="PTC08_001934"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016425723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(527)-N(7))-methyltransferase
                     RsmG"
                     /protein_id="HDK5683433.1"
                     /translation="MSVEWLATQLSEHGITLSEHQKQQFEKYYEMLVEWNGKINLTSI
                     TEKHEVYLKHFYDSITPSFYHDFNQPLNLCDVGAGAGFPSIPLKIIFPEIHVTIVDAL
                     NKRIQFLNQLAEVLELEGVRFVHDRAETFAKNEDYRASFDVVTARAVARMTVLSELCI
                     PLVKKHGVFLALKSSKGQEELEEARFAVGVLGGRIERVDTFDLPEDAGERQIVTIEKR
                     SQTPKKYPRKPGTPNKSPLVE"
     gene            4940..5791
                     /locus_tag="PTC08_001935"
     CDS             4940..5791
                     /locus_tag="PTC08_001935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001831794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HDK5683434.1"
                     /translation="MKKPFSKLFGLKNKDDLLTVTDEDKKGVQSISIEKIVPNRYQPR
                     QKFDTARIEELAESIRAHGLLQPIVVRPIEENMYEIIAGERRFRALQMNQMTDAEVLV
                     RHLDDEETAVVALIENIQRENLSAVEEAEAYKKLLAFEGITQAELAKSVGKSQSFIAN
                     KLRLLKLTPVVLEAVREHQITERHARALVGQTPEFQEEMLGVILKEQLNVKQTEERLK
                     ATTVKDDVVEEKVVARPPEFAQDVSEARDIIADSLMEIRANGIRYEQKEKEHEDYVEI
                     QIRLYRK"
BASE COUNT         2048 a         1004 c         1386 g         1639 t
ORIGIN      
        1 aaaatgaaat taacttaatt tatctataat gacgtattta gataattgaa tgaatgaaga
       61 tggaggtgtt ttgcatggta aaacgtactt atcaaccaaa taagcgtaaa catagtaaag
      121 ttcatggttt cagaaaacgc atgagcacta aaaacggccg taaagtatta gctcgtcgtc
      181 gtcgtaaagg tcgtaaagtt ttatcagcat aagatcactg actcattcag tggtcttttt
      241 tttgagttaa cggctattgg atgagacatg attgagcaat tgtgacgaat tagagagggc
      301 taatgaaaaa cgatgaaatt tgagtggttg tcctaatcac tatcccgcta ttttgggcat
      361 tttgaagaaa gacgagtgat gtacaatgga aaaagcatac cgaatcaaaa aaaatgctga
      421 ctttcaattg atttatcgca aaggtaaatc tgtagccaat cgccaatttg tcgtctatac
      481 ttatgaaact cagacgttaa cacattttag actaggcatc agcgtctcaa aaaagttagg
      541 taatgctgtg actcgaaatc gaattaaaag aagcataaga gagtgcttta aagtgcacaa
      601 agaagacatc ttgccgaaag atattattgt gattgcaaga tttcctgcga agacgatgtc
      661 gacagctgaa attcaaaaga gtttagaaca tgttttaaaa attgcgaagg tctttaacaa
      721 acgaataaag taggggagat ttagacttcg gtttgtgtga cttcagacaa accgaagtct
      781 aacttctaat aatgaataaa gcaaactttc attaaatacc tcaaataaaa catgtgattc
      841 gcaatagatt gagaaacatt ttacaatatg aaaaggaata ttgtgttaaa gggaggtacg
      901 tcaatcgtgg aacaactgga tacgataacg agtatatcaa caccaatggg ggaaggggca
      961 atcggtattg tccgtttatc aggtcatgat gcggtcgaga ttgcagataa gctatataaa
     1021 ggtaagcatc tgttaaagga tgtcccgacg catacgatta attatggtca tattattgat
     1081 ccagaaactg aagaagtcgt tgaagaggtg atggtgtcag tattacgcgc accacgtacg
     1141 tttacacgag aagatatcgt ggagattaac tgtcatggtg gtattctgac aatcaaccgc
     1201 gtacttgaat taacgatgac atatggcgca agaatggctg aacccggtga atatacgaag
     1261 cgtgctttct taaatggtcg tatcgattta tcacaggcgg aagcagtcat ggactttatt
     1321 cgttctaaga ctgaccgggc gtctaaagta gcaatgaatc aaattgaagg acgtttaagt
     1381 gacttaatta agcgtcaacg tcaatcgatt ttggagattt tggcacaagt cgaagtgaat
     1441 atcgattacc ctgaatatga tgatgtagaa gacgcgacaa ctgagttttt attagaacgt
     1501 tcacaagaga ttaaacaaga aattcaaaag ttactcgaca caggtgtgca aggtaaaatt
     1561 atgcgtgaag gtttatctac agtcatcgtc ggtaagccaa acgtcgggaa gtcttcgatg
     1621 ttgaacaatc tgattcaaga taacaaagcg attgtgacgg aagttgctgg gacaacgcgt
     1681 gacgtgctcg aggaatatgt caatgtccgc ggtgtaccgt taagattagt tgatacagcc
     1741 gggattcgtg agacagaaga tattgtcgaa cgtatcggtg tggaacgttc gcgtaaagct
     1801 ttaagtgaag cggacttaat tttattcgtt ttaaactata acgaaccatt aacagaagat
     1861 gatcgtaaat tatatgaagt gattaaaaac gaagatgcga ttgtcattat taataaaact
     1921 gatttagaac aacgcttaga ccttgcagaa gtggaaacta tggtaggaga catgccaatc
     1981 attcaaactt cgatgctcca acaacaaggg atagacgagt tagaaataca aatacgtgat
     2041 ttattctttg gtggagaggt acaaagccaa gatatgacgt acgtgtctaa ttcacgccac
     2101 atttcattat taaagcaagc taaaaatgca atacaagatg cgattgatgc tgcagaaatg
     2161 ggtgtcccaa tggatatggt acaaatcgat ttaacgcgca catgggaaat tttaggtgaa
     2221 attataggtg aatccgcaag tgaagaattg attgatcaac tgtttagtca attctgtctc
     2281 ggaaaataat ttttggaggt taacgaaatg gtaaaatcat tcgacgtgat tgtagtaggc
     2341 gctggacatt ctggtattga agctggactc gcatcagcgc gacgtggcgc acatacgctc
     2401 atgctgacaa tcaatttaga taatatcgca tttatgccat gtaacccatc agtaggggga
     2461 cctgcgaaag ggattgtcgt gcgagaaatc gatgcgctcg gtggacaaat ggcgaaaaca
     2521 atcgataaaa cacatattca aatgcgtatg ttgaacacag gtaaagggcc agctgttcgt
     2581 gcattacgtg cccaagcaga caaagtgcta tatcaacaag aaatgaaacg tattttagaa
     2641 gatgaagata acttagaagt catgcaagga atggtagacg aactgattat cgaagacgga
     2701 gaagtgaaag gtgtccgtac gaatatcggt acagaatatc gcgcaaaagc ggttatttta
     2761 acgacaggca catttttacg tggtgaaatt attctcggta atttgaaata ttcaagtggt
     2821 ccaaaccatc aattgccatc gattacactt gcagatcatt tacgcgaact tggatttgaa
     2881 gtcgtgcgtt tcaaaacagg aacaccacca cgtgtgaacg ccaaaacgat tgattatagt
     2941 aaaacagaaa ttcaacctgg tgatgatgtc ggtcgtgcat tcagttatga tacgacagaa
     3001 tatattttag accagctccc atgttggttg acgtatacga atggcgaaac acaccaagtg
     3061 attgatgata acttgcattt atctgcgatg tactcaggta tgattaaagg aacaggaccg
     3121 cgttattgcc catccattga agataagttt gtgcgtttta atgataagcc aagacatcaa
     3181 cttttccttg aaccagaagg ccgtaataca aatgaagttt acgtccaagg attgtcaaca
     3241 agcttacctg aagaagtgca acgtcaaatg ttagcgacga ttccaggttt agaaaaagca
     3301 gatatgatgc gtgcaggtta cgcgattgaa tatgacgcac tcgtaccaac acaattatgg
     3361 ccaacgcttg aaacgaaaat gatcaaaaat ctttatacag cgggtcaaat taacggaaca
     3421 tcaggctatg aagaagcggc aggtcaaggt ttaatggctg gaattaatgc agcagcgcgt
     3481 gtgttaggta aagaggaaac gattttacgc cgttcagacg catacatcgg tgtgttaatt
     3541 gatgaccttg tgacaaaagg aacgaatgaa ccgtatcgtt tattgacatc tcgtgccgaa
     3601 tatcgtttat tattacgtca tgacaatgca gatttacgtt taacagactt aggtcacgag
     3661 ttaggtttaa tttctgatga acgttacgaa agatttaata cgaagcgtca acaaattact
     3721 gatgaaatgg cacgtttaga acaaattcgt gttaaaccga gcgaacgtgt acaacaaatc
     3781 attgaagaaa agggcggttc tcgtcttaaa gatggtattt tggcgaaaga attgctacgt
     3841 cgtccagaaa tgacttatga aacgattatt gagattttag aggaagagcg tcaattgccg
     3901 gcagatgttg aagaacaagt tgaaattcaa acgaaatatg aaggttacat cacgaagtca
     3961 ttgcaacaag tagataaagt gaaacgtatg gaacaaaaga aaattccgga agacttggat
     4021 tacagtcaaa tcgacagtct cgcaacggaa gcgcgtgaaa agttagctga agtgaaaccg
     4081 ttaaacatcg cacaagcgtc acgtatttct ggtgtcaatc cagccgatat ttcgatctta
     4141 ttagtctact tagaacaagg caaaattcaa agggtgaaat aaatgagcgt agaatggtta
     4201 gcgacacaat taagtgagca cggaatcact ttatccgagc atcaaaagca acaatttgaa
     4261 aaatattatg aaatgcttgt agaatggaat gggaaaatta atttaacaag tattactgaa
     4321 aagcatgaag tgtatttgaa acatttttat gattccatca cgccgagctt ttatcatgat
     4381 ttcaatcagc cactcaactt gtgtgacgtg ggtgcaggtg cagggtttcc aagtattcca
     4441 ttgaaaatta tctttccaga aattcatgta accattgttg atgcattgaa caaacgcatt
     4501 cagtttttaa atcaattggc agaagtgtta gaattggaag gtgtccgatt tgtgcatgat
     4561 cgtgcagaaa catttgcgaa gaatgaagac taccgggcgt ctttcgatgt tgtcacagca
     4621 agggctgtcg cacgtatgac agtgttgagt gaactctgca ttccattagt gaaaaagcat
     4681 ggtgtctttt tggcattgaa atcttcaaaa ggtcaagaag agttggaaga agcacgcttt
     4741 gcagtaggtg tattaggagg acgcattgag cgagtcgata cttttgattt accggaagat
     4801 gcaggtgaac gtcaaattgt aacgatagaa aaacgtagcc aaacgcctaa aaaatatccg
     4861 cgtaaaccgg gaacgccaaa caaatcacca cttgttgaat aaagcatgga ttatggaata
     4921 ttaaagggag agaataaaca tgaagaaacc cttttctaag ttatttggtt taaaaaataa
     4981 agacgaccta ttaaccgtga cagatgaaga caaaaagggc gtgcaatcga tcagtattga
     5041 aaaaatcgta cctaatcgat accagccgcg tcaaaagttt gatacagcac gtattgaaga
     5101 actggccgag tcgattcgcg cacacggttt actccagccg attgttgtac gtccgattga
     5161 agaaaatatg tatgaaatca ttgcaggtga gcgccgtttt cgtgccttgc aaatgaatca
     5221 aatgacagat gcggaagtac tcgtgcgtca tttagatgat gaggaaacag ctgttgttgc
     5281 actgattgaa aatatacaac gtgaaaactt atcagctgta gaagaagcag aagcctacaa
     5341 aaaattacta gcgtttgaag gcattacaca ggccgaactc gccaaaagtg ttggaaagag
     5401 tcaaagtttc atcgcgaata agttgcgttt gttgaagtta acacctgtcg tattggaagc
     5461 ggtccgtgaa catcaaatta cagagcgtca tgcccgtgca ctcgttggcc aaacccctga
     5521 atttcaagaa gagatgctcg gtgtaatttt gaaagagcaa ttgaatgtga aacaaaccga
     5581 ggagcgtttg aaggcaacaa ccgttaaaga cgatgtggtg gaagagaaag tcgtggcgcg
     5641 tcctcctgaa tttgcacaag atgtctctga agcccgtgac attattgcgg atagtttgat
     5701 ggaaatccgt gcaaatggaa ttcggtatga acagaaagaa aaagagcatg aggattatgt
     5761 ggagattcag atccgattgt atcgtaagtg attgttattg aggtgtgagc aaagactgct
     5821 tgcacctttt ctttttggct ctcagaagtc ttacacggtt ctcgtaatgt aggcgttgat
     5881 gcatattcta ataattgaat atcaaacagt ttgtaaataa acgtatgttt aggggagtct
     5941 cacgtacgtc taattttatt aatagaaaaa cagcacacaa gaaaaaaatg gtatttctgt
     6001 ttgcttagat tcacttatgt ctgtaattag agtaatattg caattatgtg aggaggcgtc
     6061 tttattttat tactatt
//
LOCUS       DANHOL010000133         6021 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.134, whole genome shotgun sequence.
ACCESSION   DANHOL010000133 DANHOL010000000
VERSION     DANHOL010000133.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 6021)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6021)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6021
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.134"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            88..846
                     /locus_tag="PTC08_001936"
     CDS             88..846
                     /locus_tag="PTC08_001936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HDK5683435.1"
                     /translation="MKKSFLKFSSTFLLLTTIGMTGTNAANVWGAEEGTKVIVEDTKM
                     DTIGKRTAIFEGPKGLPCTSTMLTSNFGITAAHCGNGFQEGSVGTVYPAQSGLSTPFG
                     SMSITLFNPYENKDVAFVYGPDNGKSRDYIYYQKEFASTEITLEGLSDEELYQLVGKK
                     VYSFGYPYNYNGYKQYKFTGEVTYASKDFIKTTLPAYGGQSGSAVFLEENNKLIGILS
                     KGGEDNKDAILEPITKDIARWYKNKKSLIENPVQ"
     gene            complement(990..1547)
                     /gene="pdxT"
                     /locus_tag="PTC08_001937"
     CDS             complement(990..1547)
                     /gene="pdxT"
                     /locus_tag="PTC08_001937"
                     /EC_number="3.5.1.2"
                     /EC_number="4.3.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal 5'-phosphate synthase glutaminase
                     subunit PdxT"
                     /protein_id="HDK5683436.1"
                     /translation="MKIGVLALQGAVREHIRHIELAGHEGVAIKKVEQLEEIDGLIIP
                     GGESTTLRRLMNLYGFKEALRASQLPMFGTCAGLIVLAKDIVGEEGYLQKLDITVERN
                     SFGRQVDSFESELHIKGIDQPIEGVFIRAPHIQSTEAAVDVLGTIDDKIIAVQQGRYL
                     GVSFHPELTDDYRMTQYFIEHVMQQ"
     gene            complement(1549..2436)
                     /gene="pdxS"
                     /locus_tag="PTC08_001938"
     CDS             complement(1549..2436)
                     /gene="pdxS"
                     /locus_tag="PTC08_001938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011303857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal 5'-phosphate synthase lyase subunit
                     PdxS"
                     /protein_id="HDK5683437.1"
                     /translation="MSKQVGSERVKRGMAEMQKGGVIMDVVNAEQAKIAEEAGAVAVM
                     ALERVPSDIRAAGGVARACNPSIVEEVMNAVSIPVMAKCRIGHITEARVLEAMGVDYI
                     DESEVLTPADEVFHLKKDEYTVPFVCGCRNLGEAARRIGEGAAMLRTKGEPGTGNIVE
                     AVRHMRQVNQEVKRITVMSDDELMTEAKNLGAPYEILKDIKKHGRLPVVNFAAGGVAT
                     PQDAALMMELGADGVFVGSGIFKSEDPETFAKAIVQATTHYQDYKLIGELAKKLGTAM
                     KGIDINQLSLEERMQERGW"
     gene            2546..3955
                     /locus_tag="PTC08_001939"
     CDS             2546..3955
                     /locus_tag="PTC08_001939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent aminotransferase family protein"
                     /protein_id="HDK5683438.1"
                     /translation="MEMLMFHINKREGQPIYIQLYENIKQSIMNGRMHEGEKLPSKRQ
                     LSQYLSVSQTTVENAYAQLVDEGYIYSQPKSGFFVSDIETLPFTKKTSRPTLPTYQSP
                     TTEQAYAFNLGMIDQAHFPFEQFRKYAKEAFEELQFYLVEPGHKQGDYTLRAQISRYL
                     FHSRGVQSTPEQVIVASSTEQLLSIITDLLPGPKGMMLEDPIYPQVHQLLTRKHIPYQ
                     FVPVENDGIAMNTIENASHHIVYITPSHQFPTGVTMSLKKRMRLLKWASEDPHRYIIE
                     DDYDSEFRYEGKPIPALQSLDQTGSVIYVSTFSKSISPTIRIAYAVLPEALLHHYQQA
                     ENIEGGTVPRHTQFMVTTFMETNQFERHLNRMRKIYRQKRDIILQQLQKYPSIFEVSG
                     EKTGMHLIITIKNGWSEQQCLEQLQRFDIDMKPLSQYVYHQQETAPRFVVGFGGIPIE
                     NLETHIERLITCFKEEYCI"
     gene            complement(4010..5869)
                     /locus_tag="PTC08_001940"
     CDS             complement(4010..5869)
                     /locus_tag="PTC08_001940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FUSC family protein"
                     /protein_id="HDK5683439.1"
                     /translation="MLTYFKNVAHIDVDKIDLQRGLRQGLLMFLPLLYGLMFHDFSSA
                     LLATIGTFASIYVFKGTFNSRLRSVTFAAIGLVVTMMIGTLTASTPLLFGIFLLIVAV
                     VPFYVFNTLNIPGPSSTFFIIAYSLASVMPPDPHAFLWRGAIVGIGGLLALIFVLIEI
                     KIGHEQPEFSAVSKEFKEIQALIHHFNEQVTFNALTKTTVQTLISTSEILQTSRSVLK
                     RKSVEVQRLSLLHRTAEGVYSELLELNAKGHRPIPPIINEMMTDVVHRITQRQTSKNV
                     WRKEVNVPTAFEELVGLIFKVDEMIDAPDEQVKKHVTRQSPQYIRRLRYHLTPESMHF
                     ISAAKYSVIIGIAIFVALIFNFERAGARWIGTLIGIGIVIGFLLLEPNSLMVVIVLSL
                     SGAITEILVGANYALAMLAITVQVILLGGLAQGSLTFAIAIPRLLDTTVGVGLAIIGV
                     MIIGRRLASKRLPEFMADVTRIEARIFHTLFSNVHYNVEYFRQREKLRLKINIENMQV
                     MYRYAYGELLSNKKRTQYFYPAMFILEQMSFKLMQVMEIQKRMLISEETMGQYLVVFE
                     NIAKLLEQGQRPEKVVTLPEMNHYAQLRRSLMQLQEIELYDYQNVRNPHLLKD"
BASE COUNT         1924 a         1294 c         1040 g         1763 t
ORIGIN      
        1 ttcaacttta tttaaaaggc atcatcaata catacagaat taacggatta gtttaataca
       61 aataaatcat agaaaaggaa gacaacaatg aaaaaatcat ttttaaaatt cagttcaaca
      121 tttttacttt taacaactat cggcatgacg ggcactaacg ctgcgaatgt ttggggcgca
      181 gaagaaggaa cgaaggtcat tgtagaagat acaaaaatgg atacaattgg aaagagaacg
      241 gctatttttg aaggaccaaa aggactccca tgtacatcta caatgctgac ttccaatttt
      301 ggaatcacag ctgcacattg tggtaatggt tttcaagaag gaagtgtcgg taccgtttat
      361 cctgctcaat caggactatc aacacctttt ggatcaatgt ctataacact ttttaatcca
      421 tatgaaaaca aagatgtcgc ttttgtgtat ggtccagaca atggtaaaag ccgtgattat
      481 atttattatc aaaaagaatt tgcaagtact gagataacgc ttgaaggatt atcggatgaa
      541 gaattatatc aattggttgg aaaaaaagtg tattcatttg gttatccata taattataat
      601 ggttataaac aatataaatt tacgggagaa gtcacttatg cgagtaaaga ttttattaaa
      661 accactttac cagcgtatgg tggtcaatcc ggttccgcag tatttttaga ggaaaacaac
      721 aaattgatag gcatattatc caaaggagga gaggacaaca aagatgccat tttagagcct
      781 atcacgaaag atatcgctcg atggtacaaa aacaaaaaaa gtcttataga aaaccctgtt
      841 caataaatcc ataatctaaa gtgacacctc accatgtttg tatgaaaacg tattggggga
      901 tttacccaat tctttataca caccatatcg ttttacaaca gtaaaggcta ggaccatttc
      961 acgaagtcct agcctatttt tttcctattc tactgttgca tcacatgctc aataaaatat
     1021 tgtgtcatgc gataatcatc tgttaattct gggtggaacg atacgcctaa ataacgacct
     1081 tgttgtacag cgataatttt gtcatcaatc gtccctaata catcaacggc tgcttctgtt
     1141 gattgaatat ggggtgcacg aataaaaaca ccttcaatcg gttgatcaat acctttaatg
     1201 tgtagttcag actcgaaact atcgacttgg cgcccaaatg aattacgctc tactgtaata
     1261 tctaactttt gcagatagcc ttcttcgcct acgatatctt tcgcaaggac aattaagcct
     1321 gcacacgtac caaacatagg taattgtgat gcacgtaacg cctctttaaa accataaaga
     1381 ttcatgagac ggcgtaaagt tgtcgattcg ccaccaggga taattaagcc atcgatttct
     1441 tctaattgtt caactttttt aattgcgaca ccttcatgac ccgcaagttc aatatgacgg
     1501 atatgttcac gtaccgcacc ttgcaaagct aatacaccga ttttcatttt accaaccacg
     1561 ctcttgcata cgttcttcta atgaaagttg attaatatcg atacctttca ttgctgtacc
     1621 tagttttttc gctaactcac caattaattt ataatcttgg taatgtgtcg tcgcttgtac
     1681 aatcgcttta gcaaatgttt ctgggtcttc agatttaaaa atacctgaac ctacgaatac
     1741 accgtcagca cctaattcca tcattaatgc cgcatcttga ggtgttgcca cgccacctgc
     1801 cgcaaagttc acgactggta aacgaccatg ctttttaatg tcttttaaga tttcatatgg
     1861 cgcgcctaag tttttcgctt cagtcatcaa ttcgtcatca ctcattactg tgatacgttt
     1921 cacttcttga ttcacttggc gcatatgacg taccgcttct acgatattcc ctgtacctgg
     1981 ttcacctttc gtacgtaaca tcgcagcacc ttcaccgata cgacgcgctg cttcacctaa
     2041 gttacggcag ccacaaacga atggcactgt atattcatct tttttcaaat ggaacacttc
     2101 atctgcaggt gttaacactt ctgactcatc aatgtagtct acacccattg cttctaatac
     2161 tcttgcttct gtaatatgac cgatacgaca tttcgccatt accggaatag atacagcatt
     2221 cataacttct tctacaatag atggattaca tgcacgcgca acgccacctg ctgcacgaat
     2281 atctgatggg actcgttcaa gtgccatcac tgcaaccgca cctgcttctt ccgcaatttt
     2341 tgcttgttct gcattcacga cgtccataat tacgccgcct ttttgcattt ctgccattcc
     2401 tcgtttaaca cgttctgatc cgacttgttt agacataggt gatgaaaccc ccttttatta
     2461 tttacacatg tagcttatac tattatctga accgcttaaa gtgtcagaaa cgcaaaatat
     2521 taaagggtca gattgaggtg cgatgatgga aatgttgatg tttcatatta ataaacgaga
     2581 agggcagccg atttatattc aattatacga aaacattaaa caaagtatta tgaatggacg
     2641 tatgcatgaa ggcgaaaagt taccttctaa acgtcaactg agtcaatatt tgtcagtcag
     2701 tcaaacgacc gtggaaaatg cctatgcgca acttgtcgat gaaggttata tttatagtca
     2761 accgaaatca ggctttttcg tcagtgacat cgaaacattg ccgttcacta aaaagacatc
     2821 acgcccaaca ttgcctacat atcaaagccc gacgactgaa caagcttatg catttaactt
     2881 aggaatgatt gatcaagcgc acttcccttt cgaacaattt cggaaatatg cgaaggaagc
     2941 atttgaagaa ttacagtttt atctcgttga acctggacat aaacaaggcg attacacttt
     3001 acgtgcacaa attagtcgct atttatttca tagtcgtggg gttcaatcca cacccgagca
     3061 agtcattgtc gcttcgtcta cagagcagtt gctgtctatc attacagatt tactgccagg
     3121 acctaaagga atgatgttag aggacccgat ttaccctcaa gtccatcagc ttttaacccg
     3181 taaacatatt ccttatcagt ttgtgcccgt ggaaaacgat ggcatcgcga tgaatacgat
     3241 tgaaaatgcg tcacatcata tcgtttacat tacaccaagt catcaatttc caacaggtgt
     3301 gacgatgagc ctcaaaaagc ggatgcgtct tctgaaatgg gccagtgaag acccacatcg
     3361 ctatattatt gaagatgatt atgactcaga atttcggtat gaaggtaaac ctattccagc
     3421 cctacaaagt ttagatcaaa caggtagcgt tatttatgtg agtacatttt caaagtccat
     3481 ctctccaaca attcggattg cttacgccgt gttgccagaa gcgttgttac atcattatca
     3541 gcaagccgaa aacattgaag gtggcaccgt accacgccat acgcaattta tggtgaccac
     3601 ctttatggag acgaatcaat ttgaacgcca tttaaatcgc atgagaaaaa tttatcgtca
     3661 aaagcgagac attattttac aacaactaca aaagtatcca tccatttttg aagtttctgg
     3721 tgaaaaaaca ggtatgcatt taattattac gattaaaaat ggctggtcag aacaacagtg
     3781 tcttgagcaa ttacaacgat ttgatatcga tatgaagccc ctttcccaat acgtctacca
     3841 tcaacaagag actgcccctc gttttgtagt aggctttggt gggattccaa tagaaaattt
     3901 agaaacgcat atagaaagac tcatcacttg ttttaaagaa gaatattgca tataaaaaaa
     3961 gacatgctcg actgaacatt tcattcagcc gagcatgtct tttttacgtt taatctttca
     4021 ataagtgtgg gtttctcaca ttctgataat cgtacaactc aatttcttgc aattgcatca
     4081 gtgaacgtct cagttgtgcg taatgattca tttcaggtag cgttacaacc ttctctggac
     4141 gctgaccttg ctctaataat ttagcgatat tctcaaatac aaccaaatac tgccccatag
     4201 tctcttcact aatcaacatg cgcttctgga tctccatcac ttgcattaac ttaaagctca
     4261 tttgttcaag aataaacatc gcaggataaa aatattgcgt tcttttcttg ttcgataaca
     4321 actcaccata cgcataacga tacatcactt gcatattctc aatattaatt ttcagtctca
     4381 gtttttccct ttgacgaaaa tattcgacat tgtaatgtac attcgaaaat aacgtatgga
     4441 aaattcgggc ttcaatgcgt gtcacatctg ccataaattc cggtaaacgt ttagaagcaa
     4501 gtcttctccc aataatcatc acaccaataa tcgcaagccc tacccccact gttgtatcta
     4561 ataaacgtgg aatcgcaata gcaaacgtca agctcccttg agccaaacca cctaataaaa
     4621 tgacttgaac cgtaattgcc aacatcgcaa gcgcataatt ggcaccgact aaaatttcag
     4681 taatcgcacc acttaaacta agcacaatga ccaccattaa actattgggt tctagaagta
     4741 aaaagccaat cacaatgcca ataccaataa gcgtcccaat ccatcttgca ccagcacgtt
     4801 caaagttaaa tatcagtgcc acaaaaatgg cgataccgat gatgactgaa tatttcgcag
     4861 ctgaaataaa atgcatcgac tccggtgtta agtgataacg taaccttctt atatattgtg
     4921 gagattgtcg tgtcacatgt tttttaactt gttcatcagg cgcatcaatc atttcatcca
     4981 ccttaaaaat taaacctact agttcttcaa atgcagtagg tacattaact tcttttctcc
     5041 aaacattttt tgacgtttgc ctttgcgtaa tacggtgcac aacgtctgtc atcatttcat
     5101 ttataatagg ggggatggga cgatgacctt ttgcattcaa ttcaagtagt tctgaatata
     5161 ccccttcagc agtacgatgt agcaatgaca accgctgtac ttctacagac tttctcttca
     5221 ataccgatct tgaagtttga agaatttcag aagttgaaat caaggtttgc acggtcgttt
     5281 tggtcaaggc attaaacgtc acttgctcat taaaatggtg aatcaatgct tgaatctcct
     5341 tgaactcttt agacaccgca ctaaattcag gttgctcatg acctatctta atttcgatga
     5401 gcacaaatat aagcgcaaga agaccaccga tacctacaat agcccctctc cataaaaatg
     5461 catgcggatc agggggcata acgcttgcca aactataggc aataataaaa aacgtagaag
     5521 aaggaccagg gatatttaaa gtattaaaaa cataaaacgg cacaacagca acaattaaca
     5581 aaaagatgcc aaaaagcaaa ggcgtacttg cggttaatgt cccgatcatc atcgttacaa
     5641 ctaaaccaat ggctgcgaaa gtgactgaac gcaagcgcga attaaatgtt cctttgaaaa
     5701 cataaatact tgcaaaagtg ccaatcgttg ctaataaggc acttgaaaaa tcatgaaaca
     5761 tcaagccata gagtaaaggt aaaaacatta ataacccttg acgtaaacca cgttgtaaat
     5821 cgattttatc aacatcgata tgtgcgacat ttttgaaata agtcaacatg acagacacca
     5881 cctttgttta aataaaaaaa agagacctac taaagggtct caattcggct catcgcatcc
     5941 tatgcgtttt atttctgctt ggcaacgtcc tactctcgcg gaacgtaagt ccgactacca
     6001 tcggcgctaa agagcttaac t
//
LOCUS       DANHOL010000134         5950 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.135, whole genome shotgun sequence.
ACCESSION   DANHOL010000134 DANHOL010000000
VERSION     DANHOL010000134.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 5950)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5950)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5950
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.135"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(96..419)
                     /locus_tag="PTC08_001941"
     CDS             complement(96..419)
                     /locus_tag="PTC08_001941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683440.1"
                     /translation="MAILDMPNYIWITLLIMVVLTLFCTLVLNKWFFTAIIMFIVLGA
                     LAFILPNFKPIRYEPLLGYAAFVAILSLILSFILWFITRDWRKKRQMKKYEKERARFE
                     QQHRS"
     gene            550..2349
                     /gene="pepF"
                     /locus_tag="PTC08_001942"
     CDS             550..2349
                     /gene="pepF"
                     /locus_tag="PTC08_001942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligoendopeptidase F"
                     /protein_id="HDK5683441.1"
                     /translation="MSQKLPHRSEVARVETWDLTDLYPNPESYEQALKSLPQEAQAFK
                     VQYENQLNTVENLEKGLNTYAQLLVELERAGNYAELLHSVDTSDAERQRLNALFSTQY
                     GKVLSQLTFVESELLNLDNAVMQQAISELDYSYYLTQLQKKKPHQLHPKAEEALASMS
                     TALDVPYDIYGVTKMLDIDFGTFEVNGLTYDMDYTTFEGYYEDHDDTALRRASFRHFS
                     DILKKYEHTTAAVYNAQVQREKLEADLRGYDSVIEYLLEEQDVTLDMYHRQIDLIMSD
                     LAPIMRKYAKLVQQANGLDELKFEDLKISIDPTFEPEITIEESKKYIFGALDVLGSEY
                     VDMLHQAYDARWIDFPQNKGKETGAYCASPYSSHSYIFISWTGKMTEAFVLAHELGHA
                     GHFTFAQKHQNYLQSEASMYFVEAPSTMNEMLMLNYLFKNSNDARFKRWAIASIISRT
                     YYHNMVTHLLEAAYQREVYQRVDQGESLSAPTLNAIKRQVIEQFWGDTVTITDGAELT
                     WMRQPHYYMGLYSYTYSAGLTIGTIMAQRIKNEGETAVQDWLNTLSAGGSMSPVELAQ
                     LAGIDVTTDQPLKDTIGYIGQLVDELESLTSEI"
     gene            complement(2421..5930)
                     /locus_tag="PTC08_001943"
     CDS             complement(2421..5930)
                     /locus_tag="PTC08_001943"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012948.1,HMM:NF021909.1,HMM:NF028519.1,
                     HMM:NF037690.1,HMM:TIGR01168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fibrinogen-binding adhesin SdrG C-terminal
                     domain-containing protein"
                     /protein_id="HDK5683442.1"
                     /translation="MITNKNIYSIRKHKLGVASFLLGTLFIMGQAHDADASEISETQQ
                     EQNVDEKQAPTAEAKSTSNAPQQEVASPAPVAKETEEMKETDSAAAPNTQEVKETKET
                     EVATSTETKDSDTTKARQDAQPVSSVEKPATQTAPVEQPTTSADQTLPRQAQEGTTTV
                     DAKVINVETGKDVTSKVKVEKSSITAHQNNSNNKTSHRQPNDVNPHNAERVTLDYEWS
                     FENGIKEGDYFDFQLSDNVDTNGISATKKVPHIMDNQSGERVIAYGEIDSNNRVRYRF
                     TNYVNEKQNLNGKLSLNLYINPVKVQNEGETTVSSTLGQKLTSQNFNIKYVDGVKNET
                     GVTLNGHLDYLLKADQSFTHYATFKPNKNKLTNVKLTGTVTKGAKQNGKAGEVKVYEY
                     IGQENLPKSGYTNVSLTSQFKDITKDVQLKYNNGTGYEITFNNMNENPYVIVYKGHYM
                     NDVPDFDFITTATGNQNLNQSQDYLYLGYNNYFNLKWENGVVFYSNNATGEGKDKPVP
                     PTFGFSPTVNTIQDTHANYGEMTFQATGSLEEIEDSAVLITFAESGEDRGENTTPVIE
                     TTEDTQPVEFEETTTFPPSNHAHEMIEFEEDTNQGIQDVTLHADAIDFEEETNHGEQD
                     TVHHSDAIEWEEHTDQGETVTLHSAPLVEYDEETTTGMVTGAMSDHTTVEDTMEYTTD
                     HLLIEFEDEMNPNMRGQYGDIAVDTIEESSQVDTFTELESEFGQHDGAMTFEEDTIVQ
                     KPKTEKGHRVPRSIDLTTPKNNQTFNIQPITPNTNATATYQIGDFVWRDEDHNGVQND
                     GERGLEGVFVTLKTPEGKILRITTTDETGHYRFTNVEKGKYVVEFKTPEGYEATSKHT
                     TADTSKDSDGLIANINVTQDDMTIDAGFFPLENWNPKQEETYTIGDFVWRDEDHNGVQ
                     NDGERGLEGVLVTLKTPEGTVVASTTSDANGHYHFTNVQKGKYVVEFTTPEGYEATSK
                     HTTANTAKDSDGLIANIDVTQDDMTIDAGFFPLENWNPQPEPKQPEEKEMPEPKQPEP
                     MNPDEKEKPEPKQPDTPQPEPMNPGENEMPEPNHPDIPQPEPMNPGENEKPEPKQPDT
                     PQHPSMNEQTEPTMMPEHQPMKEAQNETTPSPKSSSQTNEALPETGESTSQPSALLFG
                     GLLSLFGLALLRRPSKQKRSQLK"
BASE COUNT         1604 a         1113 c         1143 g         2090 t
ORIGIN      
        1 aaccctatta tcttcagtca gttaatcaat agcatctcat cacgtccaca tcacaaaaac
       61 ccaatgactt gtgtatatca ctgggttcgt tatcattatg aacgatgttg ttgttcaaag
      121 cgtgcgcgtt ctttctcata ctttttcatt tgtcgttttt tgcgccagtc acgtgtaata
      181 aaccataaaa taaagcttaa aattaaactc aatattgcga caaacgcagc ataccctaat
      241 aaaggttcat aacgaatcgg tttaaagttt ggcaaaatga atgctaaagc accaagcaca
      301 atgaacatga tgattgctgt aaagaaccat ttgttaagga caagtgtaca aaacaatgtt
      361 aaaacaacca taatgagaag tgtaatccaa atatagtttg gcatgtctaa aatggccatg
      421 tatgaacctc ctttttgtat ttagccttca ttatactaga ttttaatggc tggtgtaatg
      481 atttcacatg caaaaagatg ttaaaaaacg ttataatgga attaatatat tttctaagga
      541 ggttttatta tgtcacaaaa actaccacat cgttcagaag ttgctagagt agaaacttgg
      601 gatttgactg atttatatcc taatccagaa agttatgaac aagcgctgaa atcattgccg
      661 caagaagctc aagcatttaa agtgcaatac gaaaaccaac tcaataccgt tgaaaatctt
      721 gaaaaaggtt taaatacata tgcgcaattg ctcgttgaat tagaacgtgc gggtaattac
      781 gcggaacttt tacatagcgt cgatacgtct gatgctgaaa gacaacgttt aaacgcccta
      841 ttttctacac aatatggcaa agttttaagc caattgacat ttgtagagtc agaactatta
      901 aatcttgata atgctgtgat gcaacaagcg atttcagagt tagattacag ttattattta
      961 acacaactac aaaagaaaaa accgcatcaa ttgcacccta aagctgaaga agcacttgcg
     1021 agtatgtcaa cagcattaga tgtgccatat gatatttatg gcgtgacgaa aatgttagat
     1081 attgatttcg gtacatttga agtcaatggt ctaacgtatg acatggatta tacgacattt
     1141 gaaggttatt acgaagatca tgacgataca gcgcttcgtc gtgcaagttt ccgtcatttt
     1201 agcgatatcc ttaaaaagta tgaacatacg actgctgcag tgtataatgc gcaagtgcaa
     1261 cgtgaaaaac ttgaggctga cttgcgtggt tatgattctg tgattgaata tttattggaa
     1321 gaacaagatg ttactttgga tatgtatcac cgccaaattg atttaattat gtctgattta
     1381 gcaccaatta tgcgcaaata tgcgaaactt gttcaacaag caaacggttt agatgaactc
     1441 aaatttgaag acttaaaaat ctctatcgac cctacttttg aaccagaaat tacaattgaa
     1501 gagtcgaaaa aatacatctt tggtgcatta gacgtattag gttcagaata tgtcgacatg
     1561 ttacaccaag cgtatgatgc acgttggatt gacttcccgc aaaacaaagg gaaagaaaca
     1621 ggtgcttatt gcgcaagccc ttattcatca catagctaca tctttatttc gtggacaggt
     1681 aaaatgactg aagctttcgt cctagcacat gaactgggcc atgccggaca ctttacattt
     1741 gcgcaaaagc atcaaaatta tttacaatct gaggcgtcta tgtattttgt tgaagcgcca
     1801 tcaacaatga acgaaatgtt aatgttgaat tacttattta aaaacagtaa tgatgcacgt
     1861 ttcaaacgtt gggcaattgc ttcgattatt tctcgtacgt actatcataa tatggtgaca
     1921 catttacttg aagccgcata tcaacgtgaa gtatatcaac gtgtcgatca aggtgaatca
     1981 cttagcgccc ctaccttgaa tgcaattaaa cgacaagtca tcgaacaatt ctggggagat
     2041 accgtgacaa ttacagatgg tgcggaattg acttggatgc gtcaaccgca ttactatatg
     2101 ggcttatact catacacata ttctgctggt ttaacaattg gtacgattat ggcacaacgt
     2161 attaaaaatg aaggtgagac tgctgttcaa gattggttga acacattaag cgcaggtgga
     2221 agtatgtccc ctgttgaatt agcacaactt gcaggtattg atgtcacaac ggatcaaccg
     2281 ttaaaagata ccattggtta tataggccaa ttggtagatg aattagaatc attaacgtct
     2341 gaaatttaat atttttgtta aagaaagaac ccctcattgc gtgtttggtt gcaatgaggg
     2401 gatttttaat gttgttaagc ttattttaat tgagaacgtt tttgtttaga gggtctgcgt
     2461 aataatgcga gaccgaataa gctgagtaaa ccaccaaata ataaagcgga tggttgtgaa
     2521 gttgactccc ctgtttcagg aagtgcttca tttgtttggg acgatgactt aggagatggt
     2581 gtcgtctcgt tttgtgcttc tttcatcggt tgatgttctg gcatcattgt tggctcagtt
     2641 tgttcgttca tactaggatg ttgcggtgta tcaggttgtt taggttccgg tttttcgttt
     2701 tcaccaggat tcattggttc tggttgcggt atatctggat gatttggctc tggcatttca
     2761 ttttcaccag gattcatcgg ttccggttgt ggtgtatctg gttgcttagg ttctggtttt
     2821 tctttttcat ctggattcat tggttcaggt tgtttgggtt ccggcatttc tttttcttca
     2881 ggctgtttag gctctggttg tggattccag ttttctaatg ggaagaaacc agcatcaatt
     2941 gtcatatcat cttgagtgac atcgatattt gcgattaaac cgtctgagtc tttcgcagta
     3001 tttgccgttg tatgcttgct cgtcgcttca tagccttcag gtgtagtaaa ttcaaccacg
     3061 tattttcctt tttgtacatt agtgaaatgg tagtgtccat ttgcgtcact tgtagtacta
     3121 gctacaaccg taccttcagg tgttttaagt gtcacaagca cgccttcaag tccacgttca
     3181 ccatcgtttt gaacaccatt atgatcctca tcacgccata caaagtcacc aattgtgtat
     3241 gtttcttctt gtttcggatt ccagttttct aatgggaaga atccagcatc aattgtcata
     3301 tcatcttgag tgacattaat atttgcgatt aaaccatcag agtcttttga agtatctgca
     3361 gtcgtatgct tgctcgtcgc ttcatagcct tcaggtgttt taaattcaac cacgtatttt
     3421 cctttttcta cattagtaaa acggtaatgt ccagtttcgt cagttgtcgt aatacgtaaa
     3481 atcttgcctt caggtgtttt aagtgttacg aacacgcctt caagtccacg ttcgccatca
     3541 ttttgaacac cattgtgatc ttcatcacgc catacaaagt caccaatttg atacgtcgca
     3601 gttgcatttg tatttggagt gataggttga atgttgaacg tttggttatt ttttggtgtt
     3661 gttaaatcaa tcgagcgagg tacacgatga cccttttctg ttttcggctt ctgaacgatc
     3721 gtatcttctt caaatgtcat tgcaccatca tgttgtccaa attctgattc aagttcagtg
     3781 aatgtgtcaa cttgagaaga ttcctcaatt gtatccactg caatatcacc gtactgacca
     3841 cgcatattag gattcatttc atcctcaaat tcaatgagta aatgatcagt cgtatattcc
     3901 atcgtatcct caaccgtcgt atggtcagac atcgcacctg ttaccatgcc agttgtcgtc
     3961 tcttcgtcat attcaacaag tggtgcagaa tgaagtgtca ctgtttcgcc ttgatccgta
     4021 tgctcttccc attctattgc atcagagtgg tgcaccgtgt cttgttcacc atggtttgtt
     4081 tcttcttcaa aatcaatggc atcagcatga agcgttacat cttgaatacc ttgatttgtg
     4141 tcttcttcaa actctatcat ttcatgtgca tgatttgacg gtggaaacgt cgttgtttcc
     4201 tcaaactcaa caggttgcgt atcttcagtc gtctcgataa ctggcgtagt gttttcacca
     4261 cggtcctcgc cagactcggc aaatgtaatc aatacagcac tatcttcaat ctcttctaaa
     4321 gatcctgtcg cttggaaagt catttcacca taattagcat gggtatcttg aattgtatta
     4381 acagttggac taaatccaaa agttggtggg acgggcttat ctttcccttc tccagtcgca
     4441 ttattcgagt agaaaacaac gccattctcc catttcaggt tgaaataatt attatatccc
     4501 aaatataaat agtcttgaga ttggtttaaa ttttgattcc ctgtcgcagt tgttataaag
     4561 tcgaagtcag gtacatcatt catataatga cctttataga caatgacata aggattttca
     4621 ttcatattgt taaaagtgat ttcataacca gtgccattat tgtattttaa ttgcacgtct
     4681 ttcgttatgt ctttaaactg acttgttaga cttacattag tgtagccgct tttcgggaga
     4741 ttttcttgac caatatattc ataaactttg acttctccag cttttccatt ttgttttgca
     4801 ccttttgtta ctgttcctgt tagctttaca ttagttaatt tgttcttgtt aggtttgaaa
     4861 gttgcataat gtgtgaaaga ttggtctgcc ttcaataaat aatcaagatg cccatttaat
     4921 gtgacacctg tttcattttt tacgccatca acatatttga tgttgaaatt ttgacttgtc
     4981 aatttttgtc ctaatgtaga tgaaacagtt gtttctcctt cattttgtac ttttacggga
     5041 ttaatgtata agtttaatga tagttttcca tttaaatttt gtttttcatt cacataattc
     5101 gtaaagcgat agcggacacg attgtttgaa tcaatttcac cataagcgat aactctttca
     5161 ccactttggt tatccatgat atgtggtact ttctttgttg ctgatatccc atttgtgtca
     5221 acgttgtcgc ttaattgaaa gtcaaaataa tctccttctt taatgccgtt ttcgaatgac
     5281 cattcataat ctaatgtcac gcgttcagca ttgtgtgggt tgacgtcatt aggttggcgg
     5341 tgacttgtct tattattact attattctga tgtgcagtga ttgatgattt ttctactttc
     5401 actttacttg tcacgtcttt accagtttct acattaatta ctttggcgtc aaccgtcgta
     5461 gtgccttctt gtgcttgtcg tggtaaagtt tggtctgctg atgttgttgg ttgttccact
     5521 ggtgctgtct gtgtagcggg tttctcaacg cttgatacag gttgtgcgtc ttgacgcgct
     5581 ttcgttgtat ctgagtcttt tgtttcagtt gacgttgcta cttcagtttc ttttgtttct
     5641 ttaacttctt gtgtgtttgg tgctgcagct gagtccgttt ctttcatttc ttctgtttct
     5701 ttagctacag gtgctggtga agcgacttct tgttgtggtg catttgatgt tgattttgct
     5761 tcggctgttg gcgcttgttt ttcgtcaaca ttttgctctt gttgagtttc acttatttct
     5821 gaagcatccg catcgtgagc ttgtcccata ataaataatg tccccaataa gaatgatgcc
     5881 acgccaagtt tatgctttcg aatactatat atatttttat ttgtaatcac ttttttccct
     5941 cttcttctct
//
LOCUS       DANHOL010000135         5853 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.136, whole genome shotgun sequence.
ACCESSION   DANHOL010000135 DANHOL010000000
VERSION     DANHOL010000135.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 5853)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5853)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5853
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.136"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            <1..765
                     /locus_tag="PTC08_001944"
     CDS             <1..765
                     /locus_tag="PTC08_001944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HDK5683443.1"
                     /translation="FRNFGIIYFISFSVFAILIIATTLTIEREINYKRKKQELDDYYK
                     YTVQIEKINNKMRKFRHDYTNILLTMSEYLREDDLEGLKQYYHEHISPLKSEFESNTM
                     RLNGIENLKVREIKGLITTKILQAQENNIEITVEVADEITQIDMDAIQLSRVLGIIMD
                     NAIEASNTIEDPIIQIAFIKTDASVMIIIMNKAPKDMPKLHTLFQDGFSTKGNNRGIG
                     LTTLKEIIDQTDNVFLDTTIENHYFIQKLEIMNDYE"
     gene            779..1495
                     /locus_tag="PTC08_001945"
     CDS             779..1495
                     /locus_tag="PTC08_001945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000688500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HDK5683444.1"
                     /translation="MKILICEDDPKQRERMVSIIENYIMIEEKPMEIELATNDPYAIL
                     ETSKNMTDIGCYFLDIQLESDINGIKLGSEIRKHDPVGNIIFVTSHSELTYLTFVYKV
                     AAMDFIFKDDPEELRTRIIDCLETALKRLDLLTKDHTVETLELKRGTSSVYVNYDDVM
                     FFESSPKSHRLIAHLDNRQIEFYGNLKELAQLDDRFFRCHNSYVLNRRNITSVDTKER
                     IAYFKNEEFCYVSVRNLKKI"
     gene            complement(1555..2499)
                     /locus_tag="PTC08_001946"
     CDS             complement(1555..2499)
                     /locus_tag="PTC08_001946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate kinase"
                     /protein_id="HDK5683445.1"
                     /translation="MKRFYAIGEALIDFIPTQRETSLKDVTGFEPQVGGAPCNVAAAV
                     QKLGGNSHLITQVGEDAFGDKIIETLQAVEVDISHILTTKEANTALAFVSLSNDGERD
                     FSFYRKPSADMLYEAENIDTIELQQGDLVHFCSVALVDSPMKRAHVKLLDKAEQVGAT
                     VVFDPNVRLPLWDDHDVYYETLQAFLPRAHVVKVSDEELSFVTRHEDEAEALKSLFVG
                     NVQAVIYTKGSRGASLIFEDGSTIEVPTPPAQVVDSTGAGDAFIGAISAKLCQSEQQP
                     IETLRQHGHDILKFAHQVSGRVVSQYGAISSLPTLEEL"
     gene            complement(2503..3987)
                     /locus_tag="PTC08_001947"
     CDS             complement(2503..3987)
                     /locus_tag="PTC08_001947"
                     /EC_number="3.2.1.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sucrose-6-phosphate hydrolase"
                     /protein_id="HDK5683446.1"
                     /translation="MEQWSREKRYRKYEEATHEELELLTAKVNRSPFRQTYHIQPPTG
                     LLNDPNGLIFFNGQYYIAHQWFPLGAVHGLKYWRLLTSNNLVQFEDRGVVLRPDQTFD
                     SHGVYSGSAFSFHQKLYYMYTGNHRDNEWNRHSSQIVAEVQANGSVRKLLPPAIPAPP
                     QGYTQHFRDPKVFEKDGKLYALLGAQRENETGCAVLYEAERPEGPWQFKGEIQTQLED
                     FGYMWECPDYFQIHGKDILLFCPQGIESEGDAYQNIYQSGYIMGTLNFDTLEFDHGPF
                     IELDHGFDFYAPQTMTDEAGRRVLIGWMGLPDTEYPTDDDGWAHCLTLPRTLTIEDGK
                     LKQKPHMHLRKLRKNEEVALGYANKFIKQLHPYEGVQYELVVDILENEASAFELQLRA
                     SRNESTTIRYDATTRQVSLERFDSGALPYPVEGTMRVTQLHTDLKQLRIFVDTSSIEI
                     FCNEGERVLTSRIFPEATSNKFKVVTDSGQIYLKMTKYDIVEGG"
     gene            complement(4043..4990)
                     /locus_tag="PTC08_001948"
     CDS             complement(4043..4990)
                     /locus_tag="PTC08_001948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HDK5683447.1"
                     /translation="MNIQDIANLAGVSKSTVSRYLNQGSISLKTKRKIQHVIDTYGYE
                     PNQFAQSLRAQKSMMIGIIFPRMYSHAVSQTVKGIKAKCDAFGYQMLLNLTERHVEQE
                     LDALKSFKRSKVDGILFMATTVTDAHMAVIQEIDKPVIIIGQAHASLSSVYHNDYQAG
                     QLMGREIMAQGKQHVIYASIQEDDVAVGEQRFRGLIEVLTANQVTYETLMTSFDYETA
                     LQSIKGQLTQQPSVAYVGATDTIALALYQALMHDHMTEPPWIAGFGGDPMTQIVHPTI
                     FTLPYQYEAAGRIAFEQLQLQMEQPDLIQSCQLDVNSKL"
     gene            5328..5442
                     /locus_tag="PTC08_001949"
                     /pseudo
     CDS             5328..5442
                     /locus_tag="PTC08_001949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000029204.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ribose transporter RbsU"
BASE COUNT         1793 a         1144 c         1035 g         1881 t
ORIGIN      
        1 tttcgaaatt ttggtatcat ttattttatt tctttttctg ttttcgctat attaattata
       61 gcaaccactt taacaataga acgcgaaatc aattataaac ggaaaaagca agaattagac
      121 gattattata aatatacagt acaaattgaa aaaattaaca acaaaatgcg taaattccga
      181 catgactata cgaatatttt attaacgatg tccgaatatt tacgtgaaga tgatttagaa
      241 ggtttgaagc aatattatca tgaacatatt agtcctttaa aaagcgaatt tgaatccaat
      301 acgatgcgac tgaatggtat tgagaatcta aaagtccgtg aaattaaagg cttaattacg
      361 actaaaattt tacaagcgca agaaaataat attgaaatca ctgttgaagt ggcggatgaa
      421 atcacgcaaa ttgatatgga tgcgattcaa cttagccgtg tactaggtat tattatggat
      481 aatgcgatag aagcttccaa cacgatagag gaccctatta ttcaaatcgc atttattaag
      541 acggatgcgt ccgtaatgat tattattatg aacaaagcgc caaaagatat gcctaagtta
      601 catactttgt tccaggatgg cttttcaact aaaggaaaca atcgaggtat aggattaaca
      661 acattaaaag agattattga tcaaacggac aatgtattcc ttgatacgac gatcgaaaac
      721 cattatttta ttcaaaaact agagattatg aacgattacg aataaggatg tgtgtatcat
      781 gaaaattttg atttgtgagg atgatcctaa acaacgtgaa cgcatggtgt ccattattga
      841 aaattatatt atgattgaag agaaaccgat ggaaattgag cttgctacca atgaccctta
      901 tgctatctta gaaacttcta aaaacatgac tgatattggc tgctactttt tagatattca
      961 attagagtct gatattaacg ggattaaatt agggagcgaa attcgtaagc acgatcctgt
     1021 tgggaatatt atttttgtga cgagtcatag tgagctgacg tacttgactt ttgtctataa
     1081 agtggctgcc atggatttta tttttaaaga tgatcctgaa gaattaagga cacgcattat
     1141 cgattgttta gaaacagcat taaaacggct tgatttatta acaaaagatc atactgttga
     1201 aactttggaa ctcaaacgtg gaacaagctc ggtttacgtg aactatgacg acgtgatgtt
     1261 tttcgagtcc tcaccgaagt cacatcgttt aatcgcgcat ttagacaatc gtcaaatcga
     1321 attttacggc aatttgaaag agttagctca actcgatgat cgattcttca gatgccacaa
     1381 cagttatgtg ctaaacagaa gaaatattac aagtgtcgat acgaaagaac ggattgctta
     1441 tttcaaaaat gaagaatttt gttacgtgtc ggtgcgtaat ttgaagaaaa tttaaaagct
     1501 atatatcgca ttaaaaagcc aatttcccgg ataggtggga gattggcttt ttaattaaag
     1561 ttcttctaat gttggtaagc ttgaaatagc gccatattgg gacacgacgc gacctgaaac
     1621 ttgatgtgca aattttaaaa tatcatgccc gtgttggcgt aatgtctcaa ttggttgttg
     1681 ctcggattga cataatttcg cactgattgc accgataaat gcatcgcctg ctcctgtcga
     1741 atccaccact tgcgctggcg gtgtgggcac ttcaattgtt gagccatctt cgaaaattaa
     1801 agatgctccg cgactgcctt ttgtgtaaat gaccgcttgc acgttgccga caaacagtga
     1861 ttttaacgct tccgcttcat cctcatgtcg tgtaacaaat gacagttctt catctgaaac
     1921 tttaacaaca tgtgcacgtg gtaaaaatgc ttgcaatgtc tcgtaataaa catcatggtc
     1981 atcccataaa ggtaagcgca cattcggatc aaacacaacg gtcgcaccga cttgttccgc
     2041 cttatccagt aatttcacat gtgcgcgttt cataggactg tcaactaatg ctaccgaaca
     2101 aaaatgtact aaatcacctt gttgcaactc aattgtgtca atattttcag cttcatatag
     2161 catgtctgca ctcggcttcc ggtaaaatga aaagtctcgt tctccatcat tagataaact
     2221 gacaaatgca agtgctgtat tcgcttcttt tgtcgttaaa atatgtgaga tgtctacttc
     2281 aaccgcttgt aacgtctcga tgattttgtc accaaaagcg tcttcaccca cttgtgtaat
     2341 caaatgactg ttgccaccta atttttgaac agcagcagcc acattacacg gtgcaccacc
     2401 gacttgcggt tcaaagcctg tcacatcttt caatgacgtc tctctttgtg taggaataaa
     2461 atcgatgagc gcttcaccta ttgcataaaa acgtttcatt cattatcctc cttccacaat
     2521 atcgtattta gtcattttca aataaatttg accggaatct gtgacgactt taaacttatt
     2581 tgatgtcgct tcagggaaaa tgcgtgacgt caacactcgt tctccttcat tacaaaagat
     2641 ttcaatgctt gatgtatcca cgaaaatacg taattgtttc aaatccgtat gtaattgcgt
     2701 caccctcatc gttccttcaa ctggatacgg taatgcccca ctatcaaagc gctccagtga
     2761 aacctgacgt gtcgttgcat cataccgaat cgttgtggat tcattgcgtg atgcacggag
     2821 ttgtaattca aacgcagaag cctcattttc taaaatatca acgactagct catattgcac
     2881 tccttcataa ggatggagtt gtttaataaa tttgttcgca taaccgagcg caacttcttc
     2941 atttttacgt aactttctta aatgcatatg cggtttttgt tttaatttgc cgtcttcaat
     3001 cgttaatgtt cttggcaaag ttaaacagtg tgcccaaccg tcatcatctg tcggatattc
     3061 ggtgtcaggt agacccatcc aaccaattaa cacacgtcgc cccgcttcat cagtcatcgt
     3121 ttgaggggcg taaaaatcaa acccgtggtc aagttcgata aacggaccat gatcaaattc
     3181 taatgtatca aaatttaacg ttcccattat gtaaccgctt tggtaaatgt tttgatacgc
     3241 atcgccttca gattctatgc cttgtggaca gaatagcaaa atatcttttc catgaatttg
     3301 aaaataatct ggacactccc acatataacc aaaatcttct aattgggttt gaatttcacc
     3361 tttaaactgc cacggtcctt cagggcgttc agcttcgtat aatacggcac accctgtttc
     3421 attctcacgt tgtgctccta gcaatgcata cagtttccca tctttctcaa acactttagg
     3481 atcgcgaaag tgttgtgtat acccttgagg aggtgccgga atggctggag gtaatagttt
     3541 acggactgac ccatttgctt gcacttctgc tacgatttga ctactgtgac ggttccactc
     3601 attgtcacga tgattgcctg tgtacatata atacaacttt tgatgaaacg aaaatgcact
     3661 cccactgtag acgccgtgac tatcaaacgt ttgatccggg cgtaatacga caccacgatc
     3721 ttcaaactgt acgagattgt tgcttgtgag taaccgccaa tattttaaac catgtacggc
     3781 acctagtgga aaccattgat gtgcgatata atattgacca ttaaaaaaga tcaaaccgtt
     3841 tggatcattt aataatcctg ttgggggctg aatatggtag gtttgtcgaa atggagagcg
     3901 gttcactttg gccgttaata actccaattc ctcatgtgtt gcttcttcat acttacgata
     3961 acgcttttct ctactccatt gctccatgat atacctcctt ttaacacatt ggtaacggtt
     4021 ccacctcttt tgagataaac cctcataatt tggaattcac gtcaagttga caactttgaa
     4081 taagatccgg ctgttccatt tgaagctgta attgttcaaa tgcgatacgt cctgccgctt
     4141 catattgata aggtagagtg aaaatcgttg gatgaacaat ttgtgtcata ggatctccgc
     4201 caaaaccagc aatccacggc ggttcggtca tatggtcgtg catcaacgct tgatagagcg
     4261 ccaaagcaat cgtatctgtc gcaccgacgt acgccacaga tggttgttgg gtaagctgac
     4321 ctttaattga ttgcagtgcg gtttcataat caaacgatgt catcaatgtc tcatatgtca
     4381 cctgatttgc ggttaacact tcaatcaaac ctcgaaaacg ttgctcaccg accgcgacgt
     4441 catcttcttg aatactcgca taaatgacat gttgcttccc ttgtgccata atttctcgtc
     4501 ccattagttg accagcttga taatcattgt ggtaaaccga gcttaacgat gcatgtgctt
     4561 ggccaatgat gatgactggt ttatcaattt cttgaatgac agccatatgt gcatctgtca
     4621 cagtagtcgc cataaataaa atgccatcca ctttacttct tttaaaagat ttcagtgcat
     4681 ctagttcctg ttccacatga cgctcagtta aatttaacaa catttgatag ccaaatgcgt
     4741 cacatttcgc tttaatccct ttaacggttt gtgacacagc atgagaatac attctcggga
     4801 aaataatacc aatcatcata cttttttgtg ctcttaaact ttgagcaaat tggttcggtt
     4861 cataaccgta tgtatcaatg acgtgttgaa tttttcgctt tgtctttaaa ctaatcgaac
     4921 cttgattcaa ataccttgaa actgtacttt tagaaacgcc cgctagattg gcgatatcct
     4981 gtatattcat tgttcatcac ctcacagtct caatagctat tttatcataa aacccctcac
     5041 gattactgta taaaatacga tatgagatga aaaaaaacct gattttacac agtggatact
     5101 ggtgtctatc catgagaaaa ttctcttcgt ttcttttgtc atttaatact ttcaattcat
     5161 tatctacgca taaacttgaa gcccctttac aaaaaatcat tgagaaatgg gtgtatcatt
     5221 acaaaagata atatatcaaa ataaaattaa tatatcgaat ttgtcagaac atttggtaaa
     5281 ttaaattaat aaaaaaatag attctctaat agatatagtt gagtgcgata aatatggtcg
     5341 cgctcttaat tggtttaggt ccacttctag attggatatt ttcctacaat cgcatcaaaa
     5401 tttggagata aacctgtcaa acagaacatc gtcgctaccg tttgaacact gatttttgtg
     5461 attttcttct tcccatttac tggttgtagt tttctgacaa taaccgaaac tcatttctta
     5521 actcaacata aaactttaaa aagaaatggt attgactatt attagttgaa aattaatttt
     5581 tgacaccgca actgtaactg tatttttaag taatcactga cagtatgtat agcattctaa
     5641 tgtaggcata agcatgtcct tccaaatcat tgtttgtgaa taataattgg aaggactttt
     5701 ttatttttat tgttttacct taagaaaata tcttatttaa tttaaaagta ctatttctaa
     5761 ccaaactttc aatgttcatt gaggttctaa ttcattattg tatatgattg agcaatacaa
     5821 acatgttcaa cttctaaatt tacaattttt tat
//
LOCUS       DANHOL010000136         5801 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.137, whole genome shotgun sequence.
ACCESSION   DANHOL010000136 DANHOL010000000
VERSION     DANHOL010000136.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 5801)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5801)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5801
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.137"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            18..1070
                     /locus_tag="PTC08_001950"
     CDS             18..1070
                     /locus_tag="PTC08_001950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HDK5683448.1"
                     /translation="MKKKTLIVSSLIGVILLTGIAFLVKTFGDVGGQKNEAAYDTYTV
                     KTEKPLRVTGKISPETIKTYLNNAQLGTFLNVQVKDGQKVTQGTPLLNYDIDPTQRQK
                     LVKQLTDAQQSGDQQAINQAWKQLNRYDGQVNNSVNATFNGTVSFVDNSQVGEGEPIL
                     KLIANELEIQSTISEFDLEKIKVGDTVNIKVTSTGKEGKGKITHISQLPTSYQQDATG
                     EAAGSAPVVGEGSEGADSLTTNNPVQSHPTGESDKETSKYKMTIGELDFDARNGYSVE
                     AMIPLETLKIPKSVLTKDHHVYIVDQSGVAHRTKITYDEKNGELIVKKGVKKGDRIIN
                     HPDAKIKDGEKVEVAK"
     gene            1067..1762
                     /locus_tag="PTC08_001951"
     CDS             1067..1762
                     /locus_tag="PTC08_001951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDK5683449.1"
                     /translation="MIELKGINRHFKNGNETNHILKDIELRIEQGEFVAIMGPSGSGK
                     STLINILGFIDRGYEGDYLFNGENYQKTSDNELAAIRNRTVGFVFQNFKLIQNNTILE
                     NVSVPLLYAGMRPAERNRRVLDILHRVGLYDKENLVPNKLSGGQQQRVAIARAIVNRP
                     RFIIADEPTGALDSKTSEDIMALFMELNQEQGTTMIVVTHDPKVAAQADRVIHILDGR
                     VQREEVLSHGVHR"
     gene            1746..2921
                     /locus_tag="PTC08_001952"
     CDS             1746..2921
                     /locus_tag="PTC08_001952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDK5683450.1"
                     /translation="MAYIANILHVSLRSIMKNKRRNIFTMIGIIIGIAAVITIMSLGN
                     GFKKTADEQFSDAGASKDSALVSFLPNNFDTVKEPPFTTEDIEVARQVEGVQDASIKE
                     DDTFGLTAEARTVKKKADVAVVKSETVTEPDEGEGFSKEDNALKQRVATVSSEVAETL
                     FKGDAVGQTLYIDDIGFEVVGVKEKAQVPNAVQIPTKTVEADLPNLKSDYPQLMLKVG
                     EDADKKEIATKVADQLNQRGSAVAQGSYEYADTEALMKSIGKIFDSITYFVAAVAGIS
                     LFIAGIGVMNVMYISVAERTEEIAIRRAFGAKARDIEFQFLIESVVLCLIGGIIGLVI
                     GILIAKLVDVVTPEYIQSAVSLGSIILAVGVSTLIGIVFGWIPARAAAKKELIDIIK"
     gene            complement(3764..5047)
                     /locus_tag="PTC08_001953"
                     /pseudo
     CDS             complement(3764..5047)
                     /locus_tag="PTC08_001953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000842036.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="triacylglycerol lipase"
BASE COUNT         1636 a          987 c         1359 g         1819 t
ORIGIN      
        1 taaggaggat ttttattttg aagaaaaaaa ctttgattgt gtcatcactg ataggcgtta
       61 tcttacttac aggaatagca tttttggtga aaacatttgg tgatgtcgga ggccaaaaaa
      121 atgaagctgc ttacgataca tatactgtaa aaactgaaaa accgctgcgt gtgacgggga
      181 agatctctcc ggagacgatt aaaacatatt taaataatgc acaactgggg acttttttaa
      241 atgttcaagt gaaagatgga cagaaagtca ctcaaggcac gccattattg aattatgata
      301 ttgacccaac gcaacgccaa aagttagtca aacaattgac ggacgcgcaa caaagtgggg
      361 atcaacaagc gattaaccaa gcttggaaac aattgaatcg ctatgacggt caagtgaata
      421 acagtgtaaa tgcgacattt aatggaacag tatctttcgt cgataacagt caagtcggtg
      481 aaggtgaacc gattttgaaa ttaattgcga atgagttaga aattcagtca acgatttcgg
      541 aatttgattt agagaagatt aaagtcggcg atacggtcaa tattaaagta acaagtaccg
      601 gtaaagaagg taaagggaaa atcacgcaca tttcacaact tccgacgagc tatcaacaag
      661 atgctacagg agaagctgct ggtagtgcgc ccgttgtagg tgaagggagt gaaggcgctg
      721 attcattaac aacgaataat cctgtacaat cgcatccaac aggtgaaagc gacaaagaaa
      781 catcgaaata taaaatgact attggtgaat tagattttga tgcgcgtaac ggctattccg
      841 tagaggcgat gattccgtta gaaacactca aaattccaaa atctgtgcta acgaaagatc
      901 atcatgttta tattgtagat caatctggtg tggcacatcg tacgaaaatt acgtatgatg
      961 aaaagaatgg tgaattaatc gtgaaaaaag gtgttaaaaa aggcgatcgt atcatcaacc
     1021 atcctgacgc taaaattaaa gatggtgaga aagttgaggt ggccaaatga ttgaactgaa
     1081 ggggatcaat cgtcatttta aaaatgggaa cgaaaccaat cacattttaa aagatatcga
     1141 gttgcggatt gaacaaggtg aatttgtcgc aattatgggc ccttcaggat caggtaagag
     1201 tacacttatc aatattttag gttttatcga tcgcggttat gagggggact atttgtttaa
     1261 tggtgagaat taccaaaaaa cgtcagataa tgaattggca gcgattcgta accggacagt
     1321 agggtttgta tttcaaaatt ttaaactcat acaaaacaac acgattttag aaaatgtcag
     1381 tgtgccgtta ttgtatgccg gaatgcgacc agctgaacgc aatcgacgtg tgttggacat
     1441 tttacatcgt gtcggattgt atgataaaga aaacttagtg cccaacaaat tatcaggcgg
     1501 acaacaacag cgtgtggcga ttgctagagc gattgtgaac cgtcctcgat ttattattgc
     1561 cgatgagcca actggggcac tcgattcgaa aacgtctgaa gatattatgg cgttgtttat
     1621 ggagttgaat caagagcaag gcacaacgat gattgtcgtg acgcatgatc caaaagtcgc
     1681 tgcacaagcg gatcgtgtca ttcacatttt ggatggccga gttcaaagag aagaggtgct
     1741 gtcgcatggc gtacatcgct aatattctcc acgtttcatt acgttcgatt atgaaaaata
     1801 aacgccgtaa tatttttaca atgatcggga ttattattgg gattgcggcc gtaattacga
     1861 ttatgtcatt aggaaatggt tttaaaaaga cagccgacga acagttcagt gatgcaggtg
     1921 cgtcgaaaga tagtgctttg gtcagctttt taccaaataa ttttgataca gtgaaagaac
     1981 cgccttttac gactgaagat attgaggttg cacgtcaagt cgaaggggtt caagatgcga
     2041 gcattaaaga agatgataca ttcggcttaa cggctgaagc gcgtaccgtg aaaaagaaag
     2101 cggatgtggc cgtcgttaaa agtgaaactg tcacggaacc agacgaaggg gagggtttta
     2161 gtaaggaaga caatgcattg aaacaacgtg ttgcaacggt gtcttcggaa gtggcggaaa
     2221 cgttatttaa aggcgatgca gtcggtcaaa cactgtatat tgacgatatc ggttttgaag
     2281 tcgtcggtgt aaaagaaaag gcacaggttc cgaatgctgt ccaaattccg acaaaaacag
     2341 ttgaagcgga tttacctaac ttgaaatctg actatccaca attgatgtta aaagttggtg
     2401 aagatgcgga taaaaaagaa atagcgacaa aagttgcgga tcaattgaat caacgaggtt
     2461 cagctgttgc gcaaggaagt tacgaatatg cagatactga agcgttgatg aagagtatcg
     2521 gtaaaatctt tgactctatt acgtactttg tcgcagcggt ggcggggatt tcactcttta
     2581 ttgcaggtat cggtgtgatg aacgtgatgt atatttcggt ggcagaacgt actgaagaga
     2641 ttgccattcg acgtgcattc ggtgcaaaag caagagacat tgagtttcag tttttaatcg
     2701 aaagtgtcgt gctttgttta atcggtggga ttatcggttt agtcatcggt attttgattg
     2761 cgaaattggt cgatgtggtg acacctgaat atattcaaag cgctgtgagt ttaggttcga
     2821 ttattttagc agtcggtgtg tcaactttga ttgggattgt gtttgggtgg attcctgcac
     2881 gggccgcagc gaagaaagag ttgattgata ttattaagta aacccgcatt ttgatgatgt
     2941 tgaagtgttt caaaaacatt cattttaaaa atataggtga gcatcttata gattgctgaa
     3001 ccttttttct cagtttaatc atttaacctt tatagattgt tgttttgggc ttcgcgttcc
     3061 taggtgcctc gcttcaacta accaatgctt gatttgacac tagcagaggt ggaagcgttg
     3121 gttgattttc cgcttcgact ggatgcctca ggagtctcgc ctagctcgca aacgaataaa
     3181 ggctattgaa tttgtgagag aagaaaggtt ctagcaatct ttattttggt tttctgactg
     3241 ttaacaggtg aatgtatgaa tttcatcatt atcgtcgtgt aggaagtggg tgtgaagtag
     3301 taagagtggt tttgtattgc gctacatttt tgaagtgatt taaacaatga aagagggaga
     3361 catagaaaat tttagatttc aatccattca taaatttatg attcattaat aattataaaa
     3421 cagtattaaa ataaagggag gcattgaaca taacaaattg atgctattgg tggtcatcat
     3481 ttcagaaact tgtcctctgt ttcgctgtat taggtctaag attgcccaga aggctaagac
     3541 tcttgaagga gcagtcccta agaatgcgaa accatgaggg caatcacaag ccacaaatca
     3601 tacggaaggc aagttaaaca aagtaatgta tcaatagcat caaaatttct tgtgtccgga
     3661 tgccgtgtat attaaatagg attaaaattt gaaaatcgtt ttaatgacgt taaaaatgga
     3721 taataatagt tctattggtg tacctgccat tgtcctaacc tccttatgct gtttgatcct
     3781 ctgatttgac taagtcttcc gcgagtttgt gccagaagcc tttaagttcg tcttgtgaat
     3841 gtgcggtatc atgcgtatct tgacccacaa agtcgacgtg gtcccaaccg tgttgtacag
     3901 gcatcacttg ccatacccct tttttcactt catctgtagc atcgatccat gcttgattgt
     3961 acggatgttg tgatgaaatg actgacacga gaccatcatt ttcacgccat tctttttcag
     4021 cagctttacc gatgatattg gctgtgagtg tgaatgggaa aaacaggttg taatcagctt
     4081 tttgtttacc tgaaagtgac ggatgtgtgg cttcacctgt gtacgtttta tagacgatat
     4141 ttggattgag tgaagtcttt ttgttcaatt ttgatgcgcc ttcacgtgtt agatcataga
     4201 atccgttatc ttcggtgcgc cacaattggt cattatttgc aacgcgatta aagtaatcat
     4261 ccaatgactc gccttcttta cgctgtagac cccattgatt taagccaaag tccacgcgtg
     4321 ctttattttt agcaagaact tgtgcgacat cgaaaacgat ttgacgtaca atcggctcat
     4381 taccgagttg atctgatgcg tgtgttccat tatgtggtgt gccgagtgtt gtaatagagg
     4441 ataccatgtt gtcgttatta ccagtgaaca gtggagaaat atcgccaccg tgttcctttt
     4501 ggtaggcaat ttcttcagga tttccattgc gtaacaacgc ttctaattgg cgaatcgttt
     4561 gtccacccat gctgtgaccg acaaggtgaa ctttttgacc tggcttccaa tctttgtaaa
     4621 caccttcata tgttttaccg taacgtgaat gaccgtattt tgcggcgtgt gctgcaccgt
     4681 aatccacagt acctccctta atgtagtaat aaagttctac tgcacggtcg tagttactac
     4741 cgaatgcact aatacttgct tcatatgtgt tgtaaccgtt ctcttctaag tcttgtctaa
     4801 tattcagttt ttctccaccc caatagtgag ataagacaga agggtttata ttgtctgtaa
     4861 agccattaaa accgtgcact aaaatgatag ggtcgttgtt tttatagaag ccttgtttcg
     4921 cttttttatc tgcttgtgac ttcacttgtt cagcttgacg ttgttgattt tgtggttgtg
     4981 tcgtcgctac attggctgtc gttagtgttt tcacatcatc ttttgtaggt tttggcgctt
     5041 ttgtattcac gagcgtattt ttgtccacgc ttttcgttgt cactgctcga ggtgcaacgc
     5101 gtgcattgaa cgtttttgta ttattatcag actgttctgt caattcttgg cgttgatgtg
     5161 tttcgtcagc agataaatca attgttgtag gtacacgatt ttcatcagat ggtaaatgtg
     5221 ccttctgtga gtgagtgggt tcatttttag ataaagtttc ttctgtttgc tgtgcgctgt
     5281 tttcactagt tagaactgta tttagcacgt ctttttgtgc gtcattatcc acttgtgcgt
     5341 cggaatcaat aactgtttct gctgtcgatg gtgattgttc cgaagtttct ttcaaatcag
     5401 ctgtttcttt aggtgcttct gctactgatt tggatgatgc ttgatctgtt tcagaggccg
     5461 tgtcatcttg cattttgtca gtatgtaagt cttttgtttc ggttgattgt tgagcagaag
     5521 gtgtttttgt agatgacatg acggatgtgt cttttgttgt tttctcgggt gttggtgtcg
     5581 atgcttcttt agcttgagga gaagcgggtg tttcttcttg tgcgtgattt gtttcagcag
     5641 tcgattttgc ttgtatagcg tctttggtcg caggcgcttc ttgattggtc gcttgttcag
     5701 tcgacttttg ttctgatgag tcggtcattg gttctgtatc agctaaagcc ggtgcgtgag
     5761 ataaacctat gaaaaataaa gatgcgataa cgactgatga g
//
LOCUS       DANHOL010000137         5799 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.138, whole genome shotgun sequence.
ACCESSION   DANHOL010000137 DANHOL010000000
VERSION     DANHOL010000137.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 5799)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5799)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5799
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.138"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(168..971)
                     /locus_tag="PTC08_001954"
     CDS             complement(168..971)
                     /locus_tag="PTC08_001954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen family hydrolase"
                     /protein_id="HDK5683451.1"
                     /translation="MQIQLFQINVAIANSRQNEQKIATLFEQHLDDQTDVVVLPEMWN
                     NGYALPQLDKLADEDLAQSYAFIQKLAQNYQVDIVAGSVSNRKEGAVYNTAFAVNRRG
                     EKIYEYDKIHLVPMLNEPDFLTCGKSVPYPYSLSDGTSVSQIICYDLRFPELSRYPAA
                     QGAKVMFYVAQWPEVRLTHWRQLLQARAVENDMYVVAVNGSGHDGKTTYAGHSMVVDP
                     NGEIIAEADENETVMTVTLDLQKVDTQRRAIPVFENMRPSVYRYAQKEI"
     gene            1136..2497
                     /locus_tag="PTC08_001955"
     CDS             1136..2497
                     /locus_tag="PTC08_001955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683452.1"
                     /translation="MVEYKKEHSVKRLLKFGIGSTSILCVVSPLLLTHDVVQAADINN
                     RMPTLSTLRATSSYDQTEHMDELRNAITSDSDTTQTPSFNEITVSSTNETDAASMENV
                     NPSDEVPAKDESESTTPSTEQDTSIEETGTEEVPSHEDNHHNTPSQEQQPSPPDQPGT
                     NKDEESGEKPNKENHRKPNQPNKDQPSKDENKKPDKGNKPAPPSKAPNRPHQKEDGSN
                     NTPPPATDNGGNSNDGTTTGPNGGGGSEASPPPNEQPSNGNASDTHQNGSVSSTNHSN
                     QYGTSAYDEYAGLLNNNYKYNPLFKEEVARLSQFGSQDQHDIASLSRKEQFSQNAFLD
                     DLQQSTDYFRYQYFNPLSTEQYYHRLDKQVLALVTGEFGSMPDFKKSGDKSLVNKHQQ
                     DKVKKIEQQGENINTHHMKNTKEDTGKSLSYKPMIYIGIVMVGFVGLISMILWKRLHH
                     FWK"
     gene            complement(2609..3376)
                     /locus_tag="PTC08_001956"
     CDS             complement(2609..3376)
                     /locus_tag="PTC08_001956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease"
                     /protein_id="HDK5683453.1"
                     /translation="MKRFWVSLLTVVLYILAQISPYIARAVGWIQTGNQAQLLRQSIA
                     VQFTAFIIVAILIIILQLFVKNKLNFELGPKEKKRYVLPYILVGLVIVFIAQMVVNLI
                     SVQLFGANPASENTLRIMKIARQMPIFIVLIAIVGPLLEEFVFRKVLFGELYHAINAN
                     QWVKFTIATTISSAVFAVVHMDFSHFLAYFVMGIIFSAFYIYTKRLSVSIGIHMAQNG
                     LVALIQLMMPEKMIEEAVKQTQFILLLTSHWMSFFLS"
     gene            3546..3833
                     /gene="groES"
                     /locus_tag="PTC08_001957"
     CDS             3546..3833
                     /gene="groES"
                     /locus_tag="PTC08_001957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES"
                     /protein_id="HDK5683454.1"
                     /translation="MLRPLGNRVVIEKKEHEQTTKSGIVLTDSAKEKSNEGVIVAVGP
                     GRILDNGERLKPELNEGDRVVFQQYAGTEVKRDDKEYLVLTEDEVLAVIED"
     gene            3882..5501
                     /gene="groL"
                     /locus_tag="PTC08_001958"
     CDS             3882..5501
                     /gene="groL"
                     /locus_tag="PTC08_001958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500736.1"
                     /note="60 kDa chaperone family; promotes refolding of
                     misfolded polypeptides especially under stressful
                     conditions; forms two stacked rings of heptamers to form a
                     barrel-shaped 14mer; ends can be capped by GroES;
                     misfolded proteins enter the barrel where they are
                     refolded when GroES binds; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HDK5683455.1"
                     /translation="MAKELKFSEDARQAMLRGVDKLANAVKVTIGPKGRNVVLDKEFT
                     APLITNDGVTIAKEIELEDPYENMGAKLVQEVANKTNEIAGDGTTTATVLAQAMIQEG
                     LKNVTSGANPVGIRQGIDKAVAVAIESLHNISQKVENKEEIAQVGAISAADEEVGRYI
                     SEAMEKVGNDGVISIEESNGFNTELEVVEGMQFDRGYQSPYMVTDSDKMIAELERPYI
                     LITDKKISSFQDILPLLEQIVQSNRPILIVADEVEGDALTNLVLNRMRGTFTAVAVKA
                     PGFGDRRKAMLEDLAIVTGAQVITDDLGLELKEATLDMLGTANKVEVTKDNTTVVDGD
                     GDTANIDARVGQLKAQIEETDSDFDREKLQERLAKLAGGVAVIKVGAASETELKERKL
                     RIEDALNSTRAAVEEGIVAGGGTALMNIFKDVQAIEAEGDEATGVNIVLKALQAPVRQ
                     IAENAGLEGSVIVERMKNAEPGIGYNAATDEWVNMLEAGIVDPTKVTRSALQHAASVA
                     AMFLTTEAVVANIPEDKGNDMPQMGGMPGMM"
BASE COUNT         2020 a         1022 c         1183 g         1574 t
ORIGIN      
        1 tcataattaa taacatcccc aattaaatag aataactgta aataaaacat tcccttaata
       61 tgaagaacag gcgagtccct cccaagctcg tctgttcatt tttatttgat gctcatgata
      121 aaaaaaggcg ttacttctct tgaataagag aggtagcgcc tcatatttta tatttctttt
      181 tgtgcgtagc gatatacaga cggtcgcata ttttcaaaaa ctggaatagc acggcgttgt
      241 gtgtctactt tttgaagatc taatgtgacg gtcatcactg tttcattttc atctgcttca
      301 gcgattattt ctccatttgg atccactacc attgaatgac ctgcatacgt tgttttacca
      361 tcatgaccac tgccattgac agcaaccaca tacatatcgt tttcaacggc acgtgcttgt
      421 aataactgac gccaatgtgt gagtcgaact tcgggccatt gtgcgacata aaacatcact
      481 tttgcgcctt gtgctgcagg gtaacgactc aattctggaa agcgtaagtc ataacaaatg
      541 atttgagaaa cacttgtacc gtcagagagc gaataaggat aggggacaga cttgccacag
      601 gttaaaaagt ctggttcatt taacatcggg acaagatgaa ttttatcgta ttcataaatt
      661 ttttcgccac gtcgattgac ggcaaaggct gtattgtata cggcaccttc ttttcggtta
      721 gaaacagatc ccgcaacaat gtccacttga taattttgtg ctaatttttg tataaaagca
      781 taactttgtg ctaaatcttc atctgctaac ttatctaatt gaggcaatgc atagccgtta
      841 ttccacattt caggcaagac tacgacatcc gtttgatcat ctaaatgttg ttcaaataac
      901 gtagcgattt tttgttcgtt ttgacgtgaa ttagcgattg cgacattaat ttgaaataat
      961 tgtatttgca tcgtcatcat cctcatttct gaattaatct tagtgtacta aatgatgaac
     1021 ggtttaacaa aaatcttaat tgaatacaat catatataca tgagggtggt aatcgtagtc
     1081 acttttgttt atactggctt tgttaaaaaa ctttaaacaa tcagaggtga atctgatggt
     1141 agaatataaa aaagaacata gcgtaaagcg actattaaaa tttggaatcg gttcaacgag
     1201 tattttatgt gttgtatcac ctctattatt aacacatgac gttgttcaag cagcagatat
     1261 caataacagg atgccaactt tgagtacatt gagggccact tcatcatatg atcaaacgga
     1321 acacatggat gaattacgaa acgccattac ttcagatagt gacactactc aaacaccatc
     1381 attcaatgag ataactgtgt cttcaactaa tgaaacggat gcagcgtcaa tggaaaatgt
     1441 gaacccgagt gatgaggtcc cggcaaagga tgaaagtgaa tcaacgacac cgagtacaga
     1501 acaagataca tctatagaag aaacgggtac tgaagaagtg ccatctcatg aagacaatca
     1561 tcacaacacc ccaagtcaag aacagcaacc gtctccgcct gatcaaccag gaacaaacaa
     1621 agatgaagag agtggagaaa aaccgaataa agaaaatcat cggaagccga atcaaccgaa
     1681 caaagaccaa ccttcaaaag atgagaataa aaaacctgac aaaggaaaca aaccagcacc
     1741 accgtctaaa gcgccaaatc gcccgcatca aaaggaagat ggttcaaaca acaccccacc
     1801 acctgccact gataacggtg gaaacagtaa tgacggtaca acaacgggtc ccaatggtgg
     1861 aggtggcagt gaagcaagtc caccaccgaa tgagcaaccg tcaaatggca atgcaagcga
     1921 tacccatcaa aacggttcag tttcaagcac caatcattcg aatcagtatg gtacatcggc
     1981 ttatgatgaa tacgcaggtt tattgaataa taattataaa tataatccat tgtttaaaga
     2041 agaggttgcg cgtttaagtc aatttggaag tcaagaccaa catgatattg caagtttgag
     2101 tcgtaaagaa caattttctc aaaatgcatt tttagatgac ttgcaacaaa gtacagatta
     2161 ttttagatat caatatttta acccgctttc cacagagcaa tactatcatc gtttagataa
     2221 acaagtacta gcactcgtta cgggggaatt tggttcgatg ccagatttca agaaaagtgg
     2281 tgataagtca ttggttaata agcatcagca agataaagtg aagaaaattg aacagcaagg
     2341 agaaaatatt aatacgcatc atatgaaaaa tacgaaagaa gatacaggaa aatcattaag
     2401 ttacaagccg atgatttata ttggcattgt catggtcggt tttgtcggcc tgatcagtat
     2461 gattttatgg aaacgactgc atcatttttg gaaataaatc aaaaaagggt taggccgctt
     2521 taactaaagt cgtcttaccc ctttgtgcat tgtaaaaaat aaatatgaag tatttaaaag
     2581 taattttgtg aagcagaacg tgtatagttt atgaaaggaa aaaagacatc caatgcgaag
     2641 tcaataaaag aatgaattgt gtttgcttaa cggcttcttc aatcattttt tcaggcatca
     2701 tgagttgaat gagtgcaacc aaaccatttt gagccatatg aataccaatc gacacactca
     2761 aacgttttgt ataaatataa aatgccgaaa agatgatacc catgacaaaa taagctaaga
     2821 aatgtgaaaa atccatatgg acaacagcaa atactgcaga actgatcgtc gttgcaatcg
     2881 tgaatttgac ccattgattt gcattaattg cgtgatacag ttcaccaaac aatacttttc
     2941 taaagacaaa ctcttctaat aatggtccga caatcgctat caacacaata aatattggca
     3001 tttgacgagc gattttcatg attcttaacg tattctcgct cgcaggatta gccccaaata
     3061 gttggacaga aatgagattc acaaccattt gtgcgataaa cacaatgact agacctacta
     3121 atatataggg tagtacatag cgttttttct cttttggacc aagttcaaag ttcaatttat
     3181 ttttcacgaa caactgaagt atgatgatta aaatggcgac aatgataaaa gcagtgaact
     3241 gaactgctat cgattgccgc aacaattgtg cttggttgcc tgtttgaatc cagccaaccg
     3301 cacgtgcaat ataaggtgat atttgtgcaa ggatgtatag tactacggtg agtagtgaaa
     3361 cccaaaatct cttcataatt agcctccgtt caatctcttt tattctaacg gaaaataaag
     3421 gtatggacaa tggctttaaa ggtaaacgct tgaaattttg accaattttg attattatag
     3481 aattaaatta gcactcaata tatgaaagtg ctaaattgat gttgaacata aggaggcact
     3541 catacatgct tagaccatta ggaaatcgtg tagtcatcga aaagaaagaa cacgaacaaa
     3601 caacgaaaag tggtattgtt ttaactgatt cagctaagga aaaatcaaat gaaggtgtta
     3661 tcgttgcggt aggtccggga cgcattttag acaatggtga acgtctcaaa cctgaactca
     3721 acgaaggcga tcgtgttgtg tttcaacaat atgcaggaac tgaagtgaaa cgtgacgaca
     3781 aagaatactt agtgttaact gaagatgaag tgttagctgt gattgaagac taatcaaaca
     3841 ttgaatataa aacaaatgaa tccaacaacg gaggtaatag aatggcaaag gaattaaaat
     3901 tctctgaaga tgcacgtcaa gcaatgttac gtggtgtcga taaattagca aatgctgtta
     3961 aggtgacaat tggtccaaaa gggcgcaatg tcgtacttga taaagaattt acagcaccgc
     4021 ttattacgaa cgacggtgta acgatcgcaa aagaaattga attagaagac ccttatgaaa
     4081 atatgggtgc gaaactcgtt caagaagttg cgaataaaac gaatgaaatt gcaggggacg
     4141 gtacgacaac agcgactgta cttgcacaag caatgattca agaaggactt aaaaacgtga
     4201 caagtggtgc gaacccagtc ggtatccgcc aaggtattga taaagctgtg gcagtcgcaa
     4261 ttgaatcatt acacaatatt tctcaaaaag ttgaaaataa agaagaaatt gcacaagtcg
     4321 gcgcgatttc tgcagcagat gaagaagtgg gtcgttacat ttctgaagca atggaaaaag
     4381 ttggtaatga cggtgttatc tcaattgaag aatcgaacgg ttttaacaca gaactagaag
     4441 ttgttgaagg gatgcaattt gaccgtggtt accaatcacc atacatggtg acagattctg
     4501 acaaaatgat tgctgaatta gaaagaccat acattttaat tactgacaag aaaatctctt
     4561 cattccaaga cattttgcct ttattagaac aaattgtgca atccaaccgt ccaattttaa
     4621 tcgtagcgga cgaagtagaa ggcgatgcgt taacaaacct tgtcttaaac cgtatgcgtg
     4681 gtacatttac agcggttgca gttaaggcgc ctggtttcgg tgatcgtcgt aaagcaatgt
     4741 tagaagactt agcgattgta acaggtgcac aagtgattac agatgattta ggtcttgaat
     4801 taaaagaagc gactttagat atgttaggga ctgcaaacaa agttgaagtg actaaagaca
     4861 atacaacagt ggttgatgga gatggtgata ctgcgaacat cgatgcacgt gtaggtcaat
     4921 taaaagcaca aattgaagaa actgattctg actttgatcg tgaaaaacta caagaacgtt
     4981 tagcaaaatt agctggcggt gtagcagtca ttaaagtcgg tgcggcatct gaaactgaat
     5041 taaaagaacg taaattacgt attgaagatg cattaaactc gacgcgtgca gcggtagaag
     5101 aaggtatcgt tgctggtgga ggtacggcat taatgaacat tttcaaagac gtccaagcaa
     5161 tcgaagcgga aggtgacgaa gcaacaggtg tgaacattgt attaaaagca ttgcaagcac
     5221 cagtacgtca aattgctgaa aatgcaggtc ttgaaggttc agtcatcgtt gaaagaatga
     5281 aaaatgctga gccaggtatc ggttacaacg ctgctacaga tgaatgggtg aatatgttag
     5341 aagcaggtat cgtggatcca acaaaagtga cgcgttctgc attacaacac gcagcaagtg
     5401 ttgcggcaat gttcttaaca actgaagcgg tagttgcaaa cattcctgaa gataaaggga
     5461 atgatatgcc acaaatgggc ggcatgccag ggatgatgta aaacagctta taaatgttga
     5521 tttaatggca ttttataatt gtgaatgaca tattaataac ataaaagatt tcaaaaagat
     5581 aaaaatgccg tttaattcag atgaaccaaa cggacattta aattcattct tttgaggcgt
     5641 tttccttaag cgagcaaaac ttatgggaag cgcctttttg tgtgaattgg taatctcagc
     5701 ataaatcttt aaagtcgtat ttttaaacaa ctgtattagg taagcggcgc ataaataggg
     5761 cgtcccagcc cctttcctac gattaaatat ttaactgtc
//
LOCUS       DANHOL010000138         5772 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.139, whole genome shotgun sequence.
ACCESSION   DANHOL010000138 DANHOL010000000
VERSION     DANHOL010000138.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 5772)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5772)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5772
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.139"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(46..1560)
                     /locus_tag="PTC08_001959"
     CDS             complement(46..1560)
                     /locus_tag="PTC08_001959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BCCT family transporter"
                     /protein_id="HDK5683456.1"
                     /translation="MKQTKKKKHVSLVFWISLLLCSLFVLVGAIFPKQMEETTQSITT
                     WIGQNFSWYYLLLLLAIFLICVYLLFSRYSQITLGEEGEEPEFSLKSWFAMLFSAGMG
                     IGLVFWTTAEPISHAYTATPIHQAGTQAAIDDSLQFAFFHWGIHAWAVYAIVALAFAY
                     FNFHKGYPGLVSATLTPLFGEKQMQGPLGKLLDILAVIATVTGVSATLGFGALQISEG
                     LNFLFNIPANFTTQILIIIMATALFIWSTWSGLSKGIKMLSNINMILAFIVLVVVFII
                     GPTLFILNMFTNSLGHYIAHFFDMSLRLTINNPEKSQWIQNWTVFYWAWWISWAPFVG
                     IFIARVSRGRTIKEFIIGVLFVPSLVCFVFFAVFGASAIYLQDNGIVNIAGEAIETAT
                     FATLEHFPLGFVMSIVTLLVVMIFFVTSADSATYVLGMLSTNGDNYPGSWVKVSWGIM
                     LALFAFIMLLTGGTQAIQNLLIIAALPFSFVIIFMIWSLFKALAAERPRLSKRK"
     gene            complement(1617..2627)
                     /locus_tag="PTC08_001960"
     CDS             complement(1617..2627)
                     /locus_tag="PTC08_001960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020220315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding alcohol dehydrogenase family
                     protein"
                     /protein_id="HDK5683457.1"
                     /translation="MEAIIATQPFQLAEGQKFEKVSRELPTPEAHDILIKVYATGINP
                     VDTKMRQAPLNAEARVLGFDAAGVVEAVGDAVTDFKPGDRVYYSGSNQRDGSNQTYQL
                     VNENYLAHMPKTLSFAEAAALPLTAITAYETLFDVFNISPNPQQNQGKTLFIINGAGG
                     VGSIATQIAKTYGLTVVTTASRPETNAWSKKMGADVVLNHKEDLAKQFDDQNLSRPNY
                     IFCTYDTDHYYDVMIDLVQPRGHIATIVAFNKNQDLNALKQKSITFTHEFMFARAIHG
                     VDEGMYRKYLEDVTAKVDAGQYQTTLNSVLKGLTPENVLKAHEMMEAQSHIGKLVIEI
                     VE"
     gene            2729..3718
                     /locus_tag="PTC08_001961"
     CDS             2729..3718
                     /locus_tag="PTC08_001961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016426383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HDK5683458.1"
                     /translation="MLLSILDYSPIFEDRTPQDALNHSVDLARYAENLNFHRYWLAEH
                     HEVHSVASTAPEILATMILEQTSRIHVGAGGIMLPHYSPYKVAETFKMLEARHPGRVD
                     IALGKSPSFQNVSQALNEDKQTLTDFDQQLMDLTKYFNNDSSTPHRFQHLKAMPVIET
                     QPQFCILGTSENSAERAAQLGAVFVFGAFGQKTIEKQRIIQRYRKQFQHYHPEGQPYL
                     IVSTFVLAHENSQIRAQLEDSLHYWLQRIHYLKQPKTLLSPETIQQKNWSVRELEKRA
                     ENAPRIISGDGETVAHELHELQRTFDADELLLFPQLYGEENRKHCLALIAKYW"
     gene            complement(3879..5513)
                     /locus_tag="PTC08_001962"
     CDS             complement(3879..5513)
                     /locus_tag="PTC08_001962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002498689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HDK5683459.1"
                     /translation="MNIVNVSQLTKSYNGNKVFDHIKFEVNQNDRIGLIGRNGEGKTT
                     LFKLIAKKEQADEGFISIAKDVKVGLLAQIPNLPPDAIVINQLYQAFDTLNGIEQRMR
                     QLEIKMVEGADDINQILKQYDRLQNEFETLGGYDRDYKIDIVLNGLKIAHLKTQQWSN
                     LSGGMQTKVGLAMLLLQSPELLLLDEPTNHLDIESIEWLTKFIQQYKGAVMVISHDRY
                     FLDETVTQILEIDQQQLYVYPGHYSNFVIEKEKRILNEFKAYQTQQKKIQKMKAQIKQ
                     LKIWANQAKPPNASMHRRAKSMEKALARIEVKPKPRLAYNKMKLDIAQSESASKDIFV
                     LKDVAKMYDDILFEGVNMKIRRRDKVAIVGANGTGKSTLLKLLLREIVPDEGHVQIAE
                     TNRIGYLAQHQFNTGEMSVLEAFRQYAHVSEGEARNHLAKYLFYGYDVYKKVKDLSGG
                     EKMRLRWAQMISQQFNVLILDEPTNHLDIDAKEALEEALEDFDGTVIAVSHDRYFLDK
                     HFSKTYWIDNKQLHYYPGHYSYAKQKRYSEARQKTN"
BASE COUNT         1748 a         1235 c          963 g         1826 t
ORIGIN      
        1 aagtgaaact gttatctaac aatttcactt cttaatgttt agtgattatt ttcttttact
       61 taatcgtggt cgctctgctg caagggcttt gaataatgac caaatcataa agataatcac
      121 aaatgagaaa gggagcgccg caataattaa taaattttga atagcttgcg ttccacctgt
      181 cagtaacata atgaatgcaa aaagtgcgag catgatgccc caactgactt tcacccaact
      241 gcctggataa ttgtcaccat ttgtactgag cataccgagc acataagtcg ctgaatctgc
      301 tgatgtcacg aagaaaatca tcacgaccag gagtgtgaca atactcatga cgaagccaag
      361 tggaaaatgt tccaacgtcg caaacgtggc tgtctcaatc gcttcacccg caatattcac
      421 aataccatta tcctgtaaat aaatagctga tgcgccaaat actgcaaaga aaacgaaaca
      481 gacgagtgat ggtacgaata acacacctat gataaattct ttaatcgttc gccctcttga
      541 aacacgcgcg atgaaaatac ctacaaatgg tgcccatgaa atccaccatg cccaataaaa
      601 gaccgtccag ttttgaatcc attgtgactt ttctggattg ttaatcgtta gacgtaaact
      661 catatcgaaa aagtgtgcaa tgtaatgacc taaactattc gtaaacatgt tcaatatgaa
      721 aagcgtcggc ccaatgataa aaacaactac gagcacgata aaagcaagaa tcatgttaat
      781 attacttaac attttaattc ctttacttag tccagaccat gtcgaccaaa taaataacgc
      841 cgtcgccata atgatgatca aaatttgtgt tgtgaagttg gctggaatat taaataagaa
      901 atttaaacct tcactaattt gaagcgcacc gaaacctaat gttgccgata cacctgttac
      961 tgtcgcaata accgcaagta tgtctaacaa tttgccaagc ggtccttgca tctgtttttc
     1021 accaaacagc ggtgttaacg tcgcactcac taatccagga tagcctttat gaaagttgaa
     1081 atatgcaaac gccaacgcaa cgatcgcgta gaccgcccat gcatgaatgc cccaatgaaa
     1141 aaaggcgaat tgtaaactgt catcaatagc cgcttgcgtt ccagcttgat gaataggtgt
     1201 cgccgtgtag gcatgtgaaa taggttcagc tgtcgtccaa aatactaaac caatccccat
     1261 tcctgcacta aacaacatcg caaaccatga ttttaatgaa aattccggct cttccccttc
     1321 ttcacctaat gtaatctgac tgtatctcga aaaaagtaaa taaacgcaaa tcaagaaaat
     1381 agccaataac aataataaat agtaccaact aaaattttgg ccaatccaag tagtgatcga
     1441 ttgcgtcgtt tcttccatct gttttggaaa aattgcgcca actaggacga ataaactaca
     1501 taacagtaac gatatccaaa acacgagact cacatgtttc tttttctttg tttgtttcat
     1561 gactttaact tccccttaat cgttagttaa cagtcatatt ccctcttctg tgcaatttat
     1621 tcaacaattt caatgacaag tttgccgata tgcgattgtg cttccatcat ttcatgcgct
     1681 ttcaatacat tttccggcgt taaacctttt aagactgaat ttaaagtcgt ttgatattga
     1741 cctgcatcga cttttgcagt tacatcttct aaatatttgc gatacatccc ttcgtcgaca
     1801 ccatgaattg cacgcgcaaa cataaattca tgcgtaaacg taatgctttt ctgtttcaaa
     1861 gcattcaaat cttgattctt attaaacgca acaatcgtcg caatatgacc tctaggctgt
     1921 actaagtcaa tcatcacatc gtaatagtgg tctgtatcat atgtacagaa aatgtaattg
     1981 ggacgtgaca agttttgatc atcaaattgt ttagctaaat cttctttatg atttaacaca
     2041 acatctgctc ccatcttttt agaccaagca tttgtttctg gacgagatgc cgtggtaacc
     2101 accgtcaaac catacgtctt cgctatttgc gtggcgatac ttccaacacc gcctgcaccg
     2161 ttaatgatga acaacgtctt accttggttc tgttgaggat ttggagaaat gttgaataca
     2221 tcgaacaatg tttcgtaagc cgtaatcgct gttaaaggta acgccgccgc ttcagcgaat
     2281 gacaatgttt tcggcatatg cgctaaataa ttttcattca cgagctgata cgtctgattt
     2341 gagccatctc gttgattcga tcctgaataa tatactcggt cacccggttt gaaatccgta
     2401 accgcatcgc cgaccgcttc aaccacacct gccgcatcaa aacctaggac acgtgcctca
     2461 gcatttaacg gggcttgccg cattttcgta tcaaccggat tgatccctgt tgcgtacact
     2521 ttgattaaaa tatcatgtgc ctctggtgtt gggagctcac gcgatacttt ttcaaacttt
     2581 tgaccttctg ctaattggaa cggttgagtt gcaataattg cttccataga tttcccctgc
     2641 tttctattta tttttaagca ttgtactcgt gtttatgctt attttgcttg ataattgtag
     2701 tataacacgc tttgaaagga agtcttatat gctactcagc attttagatt atagtcctat
     2761 ttttgaagac cgcacaccgc aagatgcact taatcatagt gttgatctcg cgcgttatgc
     2821 tgaaaatctg aactttcacc gctattggct agctgagcac catgaagttc attctgtcgc
     2881 atcaacagca cctgaaattt tagcaacgat gattttagaa caaacttcac gcattcatgt
     2941 tggcgccggg ggtattatgt tgccacatta cagtccatat aaagtagctg aaacttttaa
     3001 aatgctagag gcacgccatc ctggacgtgt cgatattgca cttggaaaat cacctagttt
     3061 tcaaaatgtg tctcaagcat tgaatgaaga caaacaaact ttaacagact ttgatcagca
     3121 attgatggac ttaacaaaat attttaataa tgacagctcg accccacatc gttttcagca
     3181 tttaaaagca atgcccgtca ttgaaacgca accgcaattt tgcatcttag gcacgagtga
     3241 aaacagcgca gaacgagccg cacaattagg tgctgttttt gtatttgggg cgttcggaca
     3301 aaaaacgata gaaaaacaac gtattattca acgttatcga aaacaatttc aacactatca
     3361 tcctgagggg caaccttatc tcatcgtctc tactttcgtc ttagcacatg agaatagtca
     3421 aatccgtgca caattagaag acagtctgca ttactggttg caacgcattc attatttaaa
     3481 acagccgaaa acacttttaa gtccagaaac gatacaacag aaaaactgga gtgtacgtga
     3541 acttgaaaaa cgcgccgaaa acgcgcctcg tatcatcagt ggtgacggag aaaccgtagc
     3601 gcatgaactc cacgaattgc agcgtacttt tgatgctgat gaacttttat tatttcctca
     3661 actctatggt gaggagaata gaaaacattg tttagcactc attgcaaagt attggtgaaa
     3721 cctaaataaa aaggtaatgc ttctcatagc gataagcttt taacgctaaa gaacacatta
     3781 ccttttttca tttttcaata atttgttgat tttccattga aatctatcat gactatcaga
     3841 tgcgctttaa cttgggaagg atgagcaaaa cagcaccatc aattagtttt ctgtctcgct
     3901 tctgaatatc ttttttgttt cgcataactg taatgacccg gataataatg cagctgttta
     3961 ttgtcaatcc agtacgtttt tgaaaagtgc ttatccaaaa aatatcgatc gtgtgaaaca
     4021 gcaataacag tgccatcaaa atcctctaaa gcttcttcca atgcttcttt ggcatcaata
     4081 tctaaatgat ttgtcggctc atcaagtata agcacattga attgttgaga aatcatttgc
     4141 gcccatctta atcgcatctt ttcaccacca cttaaatctt ttactttttt atagacatca
     4201 tacccataaa aaagatattt tgccagatgg tttctggctt ctccttctga cacatgtgca
     4261 tattgtctaa aagcctcaag tactgacatc tctccagtat taaattgatg ttgcgccaaa
     4321 taaccaatgc ggtttgtttc agcaatttga acatgacctt cgtcaggcac aatctctctt
     4381 aacaacaatt ttaacagcgt gcttttacct gttccatttg cacctacaat ggccacttta
     4441 tcacggcgtc taattttcat attaacccct tcaaatagga tatcatcata cattttagcg
     4501 acatctttta acacaaaaat atcttttgaa gcactttccg attgggcaat atctaatttc
     4561 attttattgt atgctagtct gggtttaggt ttgacttcga tacgcgccag tgctttctcc
     4621 atgcttttag cacgacgatg catcgacgca tttggtggct ttgcctggtt cgcccaaatt
     4681 tttaattgct taatttgggc tttcattttt tgaattttct tctgctgggt ttgatatgct
     4741 ttaaattcgt ttaaaatacg cttctctttt tcaatgacaa aatttgaata atgaccggga
     4801 tatacatata actgctgttg atcaatttct aatatttgag tgaccgtttc atctagaaag
     4861 taacgatcat gtgaaattac catcacggca cctttatatt gttggataaa ctttgttagc
     4921 cattcaatac tttctatatc taaatgattc gtaggttcat caagcagtaa caattctggt
     4981 gattgaagta acaacatcgc taaacccact tttgtctgca ttcctccgga taaattggac
     5041 cattgctgcg ttttaaggtg tgcaattttt aaaccgttga gcacaatatc aattttgtaa
     5101 tctctgtcgt aaccccctaa agtctcaaat tcattttgca atcggtcata ttgctttaaa
     5161 atttgattga tgtcatccgc cccttcaacc atcttaattt ccaactgtct cattcgttgt
     5221 tcgataccat tcaaagtatc gaaggcttga taaagctggt ttattacaat agcatctggt
     5281 ggtagatttg ggatttgtgc taggagacct actttgacat ccttagcaat actaataaag
     5341 ccttcatctg cctgctcttt tttggctatt aatttaaata aagtcgtttt cccttcacca
     5401 tttcgcccta ttaaaccaat tcggtcattt tgattcactt caaacttaat atgatcaaag
     5461 accttatttc cattatacga tttcgtgagt tgactcacat tgacgatatt cattttttat
     5521 tcctccatat cactagagga aattgtgtca gtattcctct agaagatgta tttgtttaaa
     5581 attagacaga ctacaccaat ttttaacaaa aagcgcaaat tttccacgta taatatggac
     5641 aaatcttaca cgctttacat cttctaaaaa cataccgaca cctccgttca tataatgata
     5701 aatctaattg tagcctagtt tcacttgtga ttcaaatcac ttatacttat tttaactcag
     5761 tcagattttt ag
//
LOCUS       DANHOL010000139         5527 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.141, whole genome shotgun sequence.
ACCESSION   DANHOL010000139 DANHOL010000000
VERSION     DANHOL010000139.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 5527)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5527)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5527
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.141"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            130..1011
                     /locus_tag="PTC08_001963"
     CDS             130..1011
                     /locus_tag="PTC08_001963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HDK5683460.1"
                     /translation="MKLKGFALVIVMVVFMLAGCHFNANQSKETGKSSDKGPERIISL
                     MPSNTEILYELGLGDKVVGVSTVDDYPKGVKEKQQFDAMQLNKEALIKAQPDLILAHE
                     SQKASQGKVLDSLEESGIRVAYVKDAHSINEMYETFNQIGKLTGTEQQAEQLVKETKH
                     NIQQVIDTIPKHKKAPHVFIEIASQPEMYTAGKGTFMNDMLKQLHARNVFDDTEGWPK
                     VSKEQIIKKNPDVMIATSGVSTKDYRNDVQQRGGFERVNAVKEDRVVALNDDMLSRPG
                     PRLDDAMKMLRDAVYEK"
     gene            1001..1951
                     /locus_tag="PTC08_001964"
     CDS             1001..1951
                     /locus_tag="PTC08_001964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HDK5683461.1"
                     /translation="MKNNVTKGFMSISAWSLLLMVVCTYSLFSRLEWHTPLTSTLVME
                     VRLPRMLLALFAGMGLTIAGQMFQIILNNPLADSFTLGLANGATVGAAIAVLLGLPFV
                     WVAPLAMVLGMLSLVVVMTIAYTISRGYPTRSLILAGILIGSLLNAVLFLLVQFNPQR
                     LQNIVAYMFGGFGAAEYREAAVVMSVFVIITLIFFMLVPKVKLLQMNTLSSAALGLHV
                     ERLSVTVLILATMMSTVIIGFVGVIGFIGMVIPQFVHRLSRGTLPFKMLLNILIGGTA
                     MVLADVLGAQLLDPIQLPASVVLAILGIPLMFYLMIVERP"
     gene            2008..2712
                     /locus_tag="PTC08_001965"
     CDS             2008..2712
                     /locus_tag="PTC08_001965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020220026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HDK5683462.1"
                     /translation="MDLTNIKAIIFDLEGTLLDRQKSRDKFIEEQYERFHDYLVRVQA
                     SDFRKKFIELDDDEDHDKPDLYKEIIKQFNIDRLTWKDLFNDFEMHFYRYVFPFYDTT
                     YTLQKLKEADYKIGVIANGKSKIKRYRVYALGIESYVTHLTTSEMVGFRKPHPRIYEE
                     IIEKLDVAPEEVVYVGDDALNDVAPARAMGMVSVWYRHGEREDEVIPLESEMDFEITT
                     LEELLDILNIEREAEK"
     gene            2712..3512
                     /locus_tag="PTC08_001966"
     CDS             2712..3512
                     /locus_tag="PTC08_001966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HDK5683463.1"
                     /translation="MHLFRSSDGTALNYRSMGKGYPIVMVHSVYMNHTVFEDIAKRLS
                     RYFQVILVDLRGHGYSDKPLTIDFHDYSQDLKELMEFLYIECATFIAIEMGSAVALDL
                     VQRDPKKVSELILINPTVSGEGLPHERLFRKYAETIRTWSDSEQDKFLEKHLYYAKGK
                     VRKFLKSVNDSAALLTDYEKNAVDQSFTDFELGEPLSEVQVRTLVIAGVANERIAPSE
                     SENIAELMPNATYELFKKSGVYPFVEEKEKFLKTVKSFMQRTTHNMDL"
     gene            3604..4107
                     /locus_tag="PTC08_001967"
     CDS             3604..4107
                     /locus_tag="PTC08_001967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683464.1"
                     /translation="MKKLVSAMLITGLTFSGIYAGTADAMSGNTLESVKSLQHGDRTV
                     EGVTIGEQMSDVFRDKGHGIHTKEAYGHHHYYEIHTKDGVMIVTASGAGRHAKVTRVS
                     MIYNKLNGPKYQEVKDQVSARAIKREHHNHVTGGSGYISDGKVAYQFATSTPKNQTLK
                     LYRIDVE"
     gene            4196..4912
                     /locus_tag="PTC08_001968"
     CDS             4196..4912
                     /locus_tag="PTC08_001968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683465.1"
                     /translation="MRPNDRTLLENVEDYFTHKGVSPSLIDDVKENLRKDIQKSEAED
                     KDYIEYRQKSPAEMILTIQKNLFILQFNPVVFFIINFILISSLYDKQLVPFGAATGLS
                     LVYMLVMLPISIVIYTRIMHKNYLYRNKIESYAGGALAVFALVLILMNAFDLNLGIHV
                     VTHYAHIAMAVIGVIVTSFGLYKKYLEYTGIGLLLLQKTIDVIVADDQAAQLISIAIW
                     VMILVLIIFYTIELSASKRT"
     gene            complement(5123..5494)
                     /locus_tag="PTC08_001969"
     CDS             complement(5123..5494)
                     /locus_tag="PTC08_001969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016424365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SarA family transcriptional regulator"
                     /protein_id="HDK5683466.1"
                     /translation="MAVTRVKDCFELLSMVTYADRLKSVIKKEFKISFEEFAVLTHLS
                     YRIEEEYYLKDIINNLNYKQPQVVKAVKNLSQEGYFDKRRNENDERTVLILINDQQRE
                     KINALLDRVNETIKSTDIRPQ"
BASE COUNT         1751 a          926 c         1199 g         1651 t
ORIGIN      
        1 tgatgcagtc gatgaaagtg tctatttagg tagttttcaa aaatttacat aaaaaattaa
       61 tttaaggcgc caaaaatcaa caaaaaatga taagataaac aaaataagat gaaaaatggg
      121 agtggaagga tgaaattaaa agggttcgca cttgtgatcg tcatggttgt cttcatgctc
      181 gcgggttgtc acttcaatgc aaatcagtcg aaggagacgg gcaaatcttc tgataaaggt
      241 ccggaacgta tcatttcatt aatgccaagt aatacagaga ttttatatga gctcggacta
      301 ggtgataagg tcgtaggtgt ttctacggta gatgattatc caaaaggcgt gaaagagaag
      361 cagcaatttg acgcaatgca acttaataag gaagcgttga ttaaagcgca accggatttg
      421 attttagcgc atgaatcaca aaaagcatct caaggtaaag tgttggatag tttagaagaa
      481 agtggcattc gtgttgctta tgtcaaagat gcgcattcga ttaatgaaat gtatgaaacg
      541 tttaatcaaa ttggaaagct cacaggaact gaacaacaag cagaacaatt agtgaaagaa
      601 acgaaacata acattcaaca ggtgatcgat acgattccga agcacaaaaa agcacctcac
      661 gtgttcattg aaattgcatc tcaaccagaa atgtatacag cgggtaaagg gacttttatg
      721 aatgatatgt taaagcaact ccatgctcga aatgtgtttg atgatacgga aggttggccg
      781 aaagtgtcta aagaacaaat tatcaagaaa aatccagatg tgatgattgc gacgtcaggt
      841 gtttcgacaa aggattatcg caatgatgta cagcaacgtg gtggtttcga gagagttaat
      901 gcagtgaaag aagaccgtgt tgtcgcttta aatgatgaca tgttatcacg acctggaccg
      961 cgtttagatg atgcgatgaa aatgttgaga gatgctgtgt atgaaaaata acgtaacgaa
     1021 gggcttcatg agcatcagtg catggagcct acttttaatg gttgtctgta catacagttt
     1081 attcagtcga ttagagtggc acaccccttt aacatcgaca ttggttatgg aggtacgtct
     1141 acctagaatg ctactcgcat tgtttgcagg catggggctc acaatagcag gacaaatgtt
     1201 tcaaattatc ttgaacaacc cccttgccga tagttttaca cttggactgg caaacggtgc
     1261 gacagtgggg gcggcaatcg ctgtacttct cggcttacct tttgtatggg ttgcgccttt
     1321 agcgatggtg ttgggcatgc tctcattagt cgttgttatg actatcgctt ataccatttc
     1381 gaggggctat ccgacgcgct cgctcattct agccgggata ctcatcggtt cgttgttgaa
     1441 tgcagtgctg tttttactcg tccaattcaa tccgcaaaga ctccaaaata ttgtggcgta
     1501 catgttcggt ggctttggtg ctgcggaata tcgagaagcg gccgtggtga tgagcgtctt
     1561 tgtcattatt acattgatct tcttcatgtt agttccgaaa gttaaattac tacaaatgaa
     1621 cacgctctcg agtgctgcgt tagggcttca tgtcgagcgt ttatcggtga ctgtattaat
     1681 attagcgacc atgatgtcta cagtcattat cggctttgta ggggtgattg gctttatcgg
     1741 tatggtcatt ccacaatttg tacatcgttt gagccgaggg acattacctt ttaaaatgct
     1801 tttaaatatt ttaattggtg ggacagctat ggtactggca gatgttttag gtgcacaatt
     1861 actcgacccg attcaactgc ccgcaagtgt cgtcttagca attttaggca ttccactgat
     1921 gttttatctc atgatagttg aacgaccttg agcaattgac taatatagta ttatatgaat
     1981 tttaaagaat aagtaatgag gtataccatg gacttaacaa acattaaagc aattatattt
     2041 gatttagagg gaacgttgtt agatcgacaa aaatcacgtg acaaatttat tgaagagcaa
     2101 tacgaacgtt ttcatgatta tttagtacgt gtacaagcct cagacttccg caaaaaattt
     2161 atcgaacttg atgacgacga agatcatgat aaacctgatt tatacaaaga aatcatcaag
     2221 caattcaaca ttgatcgttt aacatggaaa gatttattta acgactttga aatgcatttc
     2281 tatcgttacg tttttccatt ttatgacacg acctatactt tgcaaaaact gaaagaagcg
     2341 gattataaaa ttggtgttat cgcaaatggg aaatctaaaa ttaaacgtta tcgtgtttat
     2401 gcgttaggta tcgaatctta cgtgacacat ttgacgactt ctgaaatggt gggctttcga
     2461 aaaccgcatc cacgtattta tgaagaaatt attgagaaat tagatgtcgc accagaagag
     2521 gtggtgtacg tcggcgatga tgcgttgaat gacgtcgcac ctgctcgagc aatgggcatg
     2581 gttagcgtct ggtatcgtca cggtgaaaga gaagatgagg ttattccttt agaatcggaa
     2641 atggattttg aaattacaac actggaagaa ttattagata ttttaaacat cgaacgggag
     2701 gctgaaaagt aatgcattta tttagatcat cagatgggac agcattgaat tatcgctcaa
     2761 tgggaaaagg ttatccgatt gtgatggtac attcagtgta tatgaatcat acagtatttg
     2821 aggatattgc gaagcgtttg tcacgctatt ttcaagtgat attagtcgac ttgagaggac
     2881 acggatactc tgacaaaccg ttaacgattg attttcatga ttatagtcaa gatttaaaag
     2941 aattgatgga gtttctgtac atcgaatgtg cgacatttat cgcgattgaa atgggaagtg
     3001 cggttgcatt agacctcgtt caacgtgatc caaagaaagt ctcagaactc attttaatta
     3061 atccgactgt ctctggagaa ggcttaccac atgagcgctt gttccgtaaa tacgctgaaa
     3121 cgattcgtac ttggagcgat tcagaacaag ataagttttt agaaaagcat ttatactatg
     3181 ctaaaggaaa agtgcgcaag tttcttaaaa gtgtcaatga ctcagcagct ttattaacag
     3241 attatgagaa aaatgcagtg gaccaatcat ttacagattt tgaacttggt gaaccattgt
     3301 ctgaagtgca agtacgcaca ctcgtgattg caggtgtggc gaatgaacgt atcgcgccga
     3361 gtgaatctga aaatattgcc gagttgatgc cgaatgcgac gtacgaatta tttaaaaagt
     3421 caggcgtata tccatttgta gaagaaaagg aaaaatttct caaaacagtg aaaagcttta
     3481 tgcaaagaac gacacataat atggacttgt aaccattttg taatacaact gttattttat
     3541 tgcaatttag ggtatgatga taatgagcac aaaaaagaga gacaaaagag gagcgtgtgc
     3601 cctatgaaaa aactagtcag tgcaatgtta ataacaggac ttacattttc ggggatttat
     3661 gcaggtacag cagatgcgat gtcagggaat acattagaat cagtgaaatc attacaacac
     3721 ggcgatcgca cagtagaagg tgtgacaatt ggcgaacaaa tgagtgacgt attccgagac
     3781 aaaggccatg ggattcatac gaaagaagct tacggtcatc atcattatta tgaaattcat
     3841 acaaaagatg gtgtgatgat tgtgactgcg agcggcgcgg gtcgacatgc gaaggtgaca
     3901 cgtgtgagta tgatttacaa taaactgaac ggtccgaagt atcaagaggt gaaggatcaa
     3961 gtgagtgcac gtgcgattaa acgtgaacat cataatcatg tcacaggggg tagcggttat
     4021 atttcagatg gtaaagtggc ataccaattt gcgacttcta caccaaaaaa tcaaacattg
     4081 aagctctatc gcattgatgt agagtaatgt acgacgtaac tgtacaaacg gaagcgtcta
     4141 cacgccaggt ctcacttctg atataatggt gctatcaaat gagacggagg attttatgag
     4201 acctaatgat cggactttac tggagaatgt agaagattac tttacgcaca aaggtgtatc
     4261 tccaagttta atcgacgacg ttaaagaaaa tttgagaaaa gatattcaaa aatcagaagc
     4321 ggaagataaa gactatatcg aatatcgtca aaaatctccg gctgaaatga tactaacaat
     4381 acaaaaaaac ttatttatat tacagttcaa cccggtcgtg ttttttatca tcaactttat
     4441 attaatttca tcgctctatg acaaacaatt ggtgcctttc ggtgctgcca caggtttatc
     4501 actcgtgtat atgcttgtca tgttgccgat atcgatcgtt atatatacac gaatcatgca
     4561 taaaaattat ttgtatcgca ataaaataga gagttatgca gggggagctt tagcggtttt
     4621 tgccctcgta ctcattttaa tgaatgcgtt tgatttgaac ttaggtattc atgttgtgac
     4681 gcattatgca catatcgcga tggcagtaat tggcgtgatc gtgacgagct ttggattgta
     4741 taaaaagtat ttagagtaca caggaattgg cttattatta cttcaaaaga ccattgatgt
     4801 gattgttgct gatgatcagg cggctcagct catttccatt gcaatttggg tgatgatttt
     4861 agtgttgatt attttctaca caattgaatt gtcagcgagc aaacgaacat aagtggcatc
     4921 caagcagtat aaaataccct ttcgaagcgt gttacattaa gcaatgtcac ttcgaaaggg
     4981 tattttggtg agggttaaac ggagcaaaaa agtaaaacca ctcgttgtag tcgtataaaa
     5041 agacaatgag tggttttact ttacacttgt acgtatgctc cataagcccc atacgtttca
     5101 taattcatgc tttgttccaa aattactgtg gtcgaatatc tgtagatttg attgtttcat
     5161 taacacggtc tagtaaagcg ttgatttttt cacgttgttg atcgttaatt aaaatcagta
     5221 ctgtacgttc atcgttttca ttacggcgtt tatcgaaata tccttcttga gataagtttt
     5281 taacagcttt cacgacttgc ggttgcttat agtttaagtt gttaatgata tcttttaaat
     5341 aatattcctc ttctattcta tagcttaagt gtgttaaaac cgcgaactct tcaaaactaa
     5401 ttttaaattc ctttttaatc acacttttta atctatcagc gtaagtcacc atagataata
     5461 actcaaaaca atccttgact cttgtaacag ccatactcat aacctcccat atatattacc
     5521 cttaaac
//
LOCUS       DANHOL010000140         5479 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.142, whole genome shotgun sequence.
ACCESSION   DANHOL010000140 DANHOL010000000
VERSION     DANHOL010000140.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 5479)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5479)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5479
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.142"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            15..704
                     /locus_tag="PTC08_001970"
     CDS             15..704
                     /locus_tag="PTC08_001970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020220275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4064 domain-containing protein"
                     /protein_id="HDK5683467.1"
                     /translation="MTNQYTYNQQQHNQMHSNDLNGTPKPFKRTVEKVLTWVGIVLHI
                     VWILLLVGLVKVIQTPEFQQEIQATGQDIAQIENLGSSTFLLALIPLVFAIVAVFIFK
                     KNILAGILLILAAATGLFLTMSLISAVLWLIAGIMLIVRKPKRQDTVIYDAHNNNAND
                     SDRQRGTTTDPYVYGNDTTKSVRDEHESNFNRENHDEERNGFEQNIKDDTTDLKKDLN
                     DSKGDTEDRLR"
     gene            complement(1388..1999)
                     /locus_tag="PTC08_001971"
     CDS             complement(1388..1999)
                     /locus_tag="PTC08_001971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1054 domain-containing protein"
                     /protein_id="HDK5683468.1"
                     /translation="MTKYIFKPKDFKVFQIEGLDARMEGLEKQIRPQLNALGDYFADY
                     LETVTGETFYAHVAKHARRKVNPPKDTWVAFATNKRGYKMMPHFQIGLFEDHLFVMYG
                     VMHEDPNKAEDVKVFEQKLDTLLNLPEDFQISLDHMQPTKSRIQDMSQEEIEAGITRA
                     KNVKKGEFFVARAITPQSEHLKSDRKFIAFLEDTFEQLLKFYQ"
     gene            2117..2935
                     /locus_tag="PTC08_001972"
     CDS             2117..2935
                     /locus_tag="PTC08_001972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase family protein"
                     /protein_id="HDK5683469.1"
                     /translation="MHLYDYAKSLVLEAGNNVRKWMVEDLAIEEKSNPNDLVTNVDKA
                     IEQFIVQQIQESYPHHRIIGEEGHGHDIESTEGVVWVIDPIDGTLNFIHQGENFAISV
                     GIFKDGKPYAGFVYDVMADLLYHAKVGHGAYINQNAIPQLEGTQVRESIIGMNPNWLT
                     KPILSSILQPIISDSRSARAYGSAALEIVYVATGQLAAYLTPRLQPWDYAGGMIILNE
                     VGGVATNFAGEPLSITAPNSILMGNAQVHEEIRRDYLQGYDHVLTALQQKFKRK"
     gene            complement(3163..3348)
                     /locus_tag="PTC08_001973"
     CDS             complement(3163..3348)
                     /locus_tag="PTC08_001973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlaF family protein"
                     /protein_id="HDK5683470.1"
                     /translation="MKKSQSIFLILAIIAVFFLTMFSFAVAATSIFWMIIMFILMVVT
                     FGVGFTLKKKYRENDWL"
     gene            3445..5295
                     /gene="typA"
                     /locus_tag="PTC08_001974"
     CDS             3445..5295
                     /gene="typA"
                     /locus_tag="PTC08_001974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translational GTPase TypA"
                     /protein_id="HDK5683471.1"
                     /translation="MTKFREDVRNIAIIAHVDHGKTTLVDELLKQSGIFRENERVEER
                     AMDSNDLERERGITILAKNTAVDYKDTRINILDTPGHADFGGEVERIMKMVDGVVLVV
                     DAYEGTMPQTRFVLKKALEQNLKPVVVVNKIDKPSARPEGVVDEVLDLFIELDANDEQ
                     LDFPVVYASAINGTASLDPEKQDENMQSLYETILEYVPAPVDNRDEPLQFQPALLDYN
                     DYVGRIGIGRIFRGTMRVGESVSLIKLDGTVKNFRVTKIFGYFGLKREEIQEAYAGDL
                     IAVSGMEDINVGETITPQDHQEALPVLRIDEPTLEMTFRVNNSPFAGREGQFVTARQI
                     QERLDNQLETDVSLKVTPTDSPDAWTVAGRGELHLSILIENMRREGFELQVSKPQVIL
                     KDIDGVLHEPFERVQTEVPEEYAGAIIESLGQRKGEMVDMVTTDNGLTRLIFNVPARG
                     LIGYTTEFMSMTRGYGIINHTFDEFRPRIKGRIGGRRNGVLVSMDQGSASEYAILGLE
                     DRGINFMEPGTEVYEGMIVGQNNRENDLTVNITKVKHQTNVRSATKDQTETMKKPRKL
                     SLEEALEFINDDELVEVTPENVRLRKKILNKGQREKEAKRIKQMMESEEN"
BASE COUNT         1814 a          886 c         1140 g         1639 t
ORIGIN      
        1 aggagggttt ttagatgaca aatcaatata cgtataatca acaacagcat aatcaaatgc
       61 attcaaacga tttgaacggg acaccaaaac cgtttaaacg cacagttgaa aaagtattaa
      121 cttgggttgg aattgtgtta catattgttt ggattttgct tttagtaggt ttggtaaaag
      181 taattcagac acctgaattc caacaagaaa ttcaagcaac aggtcaagat attgcacaga
      241 tagagaattt agggtcaagt acatttttgt tagcattaat tccgcttgta tttgcgattg
      301 ttgcagtgtt tatctttaaa aagaacattt tagctgggat tctgttaatt ttagcagctg
      361 cgacaggttt gtttttaacg atgagcttaa tttcagcagt attatggttg attgccggta
      421 ttatgctaat cgtgcgtaaa ccgaaacgtc aagatactgt gatttacgat gcgcataaca
      481 ataatgcaaa tgattccgac cgtcaacgtg gcacaactac ggatccttac gtttatggta
      541 acgacacaac aaaatcagtg cgtgatgaac atgagtcaaa ttttaaccga gaaaatcacg
      601 acgaagaacg caatggtttt gaacaaaata ttaaagacga tacaacagat ttaaaaaaag
      661 atttgaacga tagtaaaggc gatacagaag accgtctgcg ttaatcattc gaaatctcaa
      721 gtatgtttag gttttatcct agaatacttg ggatttttta tttttgagac attgtgttgc
      781 aacgttattt tgttttcata aatttaagta cgaaaataag acgtaagggg atttgaaaat
      841 aaaaatggaa aaagggtggg acatagaaag ctttagccgt aatctattca tagattgatg
      901 attcattaat gactttaaag caatggaaaa tgaggggaaa taggatacaa aaaatgatgc
      961 taatgctttc tagttttcat actcttaccc tcagttttgc tgtaattgat atcaaattgt
     1021 ccagaaggat gagacgccta agggaatgcg tgaatactgc tggtagtgat agcttctctt
     1081 taatagtggt tactaccagc agtagctgtt tgacttctca atggcatacg cttttgagaa
     1141 gtcgagtcag ccgtgcgggg gcagtacgac gaaatcttta ttgtacatga gatttctgaa
     1201 ctgctccaaa attcattaac gtcttaacaa atgtaacagt ttaatcgagc cgagttgaag
     1261 gggcggcccc taagaaagaa gccatgaggg caatcataaa cacaatttgt ggaagagggc
     1321 aagtttaaca agaatattgc atcaataaca tcaaaatttt tgtgtcctat acctacaaat
     1381 tttggtgtta ttgataaaat tttaataatt gctcaaacgt gtcttctaaa aaggcaatga
     1441 atttacgatc tgattttaaa tgttcagatt gtggcgtgat agcacgagct acaaaaaatt
     1501 cccctttttt cacatttttt gcacgcgtga tacctgcttc aatttcttct tgggacatgt
     1561 cttgaatacg tgatttcgtc ggttgcatat ggtctaacga aatttggaag tcttcaggca
     1621 agttgagtaa tgtatctaac ttttgctcga acacttttac gtcctccgct ttgtttggat
     1681 cctcgtgcat tacaccatac attacaaata aatggtcttc aaataagccg atttggaaat
     1741 gaggcatcat tttataaccg cgtttatttg tagcaaatgc cacccatgtg tctttagggg
     1801 ggttcacttt acgacgtgca tgtttcgcca cgtgcgcata aaacgtttca cctgttactg
     1861 tttctaggta atctgcaaaa tagtcaccta aagcgttcaa ttgaggacgg atttgctttt
     1921 cgagcccttc cattcgtgcg tcaagtcctt caatttgaaa aactttgaaa tcttttggtt
     1981 taaatatgta tttcgtcatg gattgacctc cttatcgtat gtctatgaaa ttacttttat
     2041 tgtagcatat tacagtcgtt tgaacattta aattgaatca aattagtgta taataaatgc
     2101 aataggagtg aggcaaatgc atttatatga ttatgcgaaa agtctagtat tagaagcggg
     2161 gaataatgtt cgaaaatgga tggtggaaga cctcgctata gaagaaaaat caaatccaaa
     2221 tgatcttgtt acgaatgtag ataaagcgat tgaacaattc atcgtacaac aaattcaaga
     2281 aagttatccg caccatcgta ttatcggtga agaagggcac ggccatgata ttgagtcgac
     2341 tgaaggtgtt gtttgggtca ttgatcccat cgatggcacg cttaatttca ttcatcaagg
     2401 cgagaatttt gcgatttctg taggtatttt taaagatggc aagccctatg ctggatttgt
     2461 ttatgatgta atggctgatt tattgtatca tgctaaagta ggtcacggcg cttacattaa
     2521 tcaaaatgca attccacaac tagagggtac gcaagttcgt gaaagtatta tcggtatgaa
     2581 tccgaactgg ttaacgaaac cgattttaag ttcgatttta cagccgatta ttagtgactc
     2641 gagaagtgca cgtgcatatg gttcagctgc attagaaatt gtttatgttg cgactggtca
     2701 acttgcggcg tatttaacac cacgattaca gccttgggat tatgcaggtg gtatgattat
     2761 tttaaatgaa gtcggtggtg tggcaactaa ctttgccgga gagccgttat caatcacagc
     2821 gccaaactct attttaatgg ggaatgcgca agtccacgaa gaaattagac gtgactatct
     2881 tcaaggttat gatcatgtgt taaccgcttt acaacaaaag tttaaacgca aataaacatt
     2941 gagctatcac aattaaaatg atttgaatac atacatcgct acaaagatat tcaatgcgta
     3001 gcggtgtttt ttattgataa aagggtaatg ggcatagtca cataaaaaag atagtgccaa
     3061 tgattgttca tcaagcacta tctatgtaaa agtttatcat tccatcacta agcccatgat
     3121 gtggcatgcg tgttgtgata cgaagcgatg tgtaaatttc agttataacc aatcattttc
     3181 acgatatttc ttttttaatg taaagccaac accaaaagta acgaccatta agataaacat
     3241 aataatcatc caaaaaatgc tcgttgcagc aacggcaaag ctaaacattg ttaaaaagaa
     3301 tacagcgatg attgcaagga ttaaaaaaat ggattgagat tttttcatta tcagcccacc
     3361 tcactgtttc ttcattccat ttctatgata taataaacga gttgtaaaag aaagtgataa
     3421 tttacccgag aaaggaatta cagtatgaca aaatttagag aagatgttcg taacattgcg
     3481 attatcgctc acgtagacca tggtaaaaca actttggttg atgaattatt aaaacaatcc
     3541 ggtattttta gagaaaatga acgtgtagaa gaacgtgcga tggactcaaa tgatttggag
     3601 agagaacgtg gtattacaat tttagcgaaa aatactgcgg ttgactataa agatacgaga
     3661 atcaatattt tagatacgcc agggcacgct gactttggtg gagaagtaga gcgtataatg
     3721 aaaatggtag atggtgttgt attagtggtt gacgcttatg aggggacaat gccacaaaca
     3781 cgtttcgtat tgaaaaaagc gttagagcaa aatttaaaac ctgttgtcgt tgtgaataaa
     3841 attgataaac cttcagcccg tccggaaggg gttgtcgatg aagttttaga tttatttatt
     3901 gaattagacg ccaatgatga acaacttgat ttccctgtag tgtatgcttc ggcgattaac
     3961 ggtacagcga gcttagatcc agagaaacaa gatgaaaaca tgcaaagtct atacgaaacg
     4021 attttagagt atgtgccagc gccagtagac aacagagatg aaccattaca attccaacct
     4081 gcattattag actataacga ttatgtagga cgtatcggta tcggtcgtat tttcagagga
     4141 acgatgcgtg tcggtgaaag tgtgtcatta attaaattag atggcactgt gaaaaatttc
     4201 cgtgtaacga aaatattcgg ttatttcggt ctgaaacgtg aagaaatcca agaagcttat
     4261 gctggagacc ttattgcagt atcgggtatg gaagacatta acgtcggtga aacgataaca
     4321 ccacaagatc atcaagaagc gttaccagta ttacgtattg atgaaccaac acttgaaatg
     4381 acatttagag ttaataattc accttttgct ggtcgtgaag gacaatttgt cactgcacgt
     4441 caaattcaag aacgtcttga taatcaatta gaaacagacg tgtccttaaa agtgacgcca
     4501 actgattcac cagatgcatg gacagttgcc ggtcgtggag agttacactt atctatttta
     4561 attgaaaata tgcgtcgtga aggttttgaa ttacaagttt cgaaaccaca agttatttta
     4621 aaagacattg atggtgtttt acatgaacca tttgaacggg tacaaactga agtaccagaa
     4681 gaatatgctg gtgcaattat tgaatcttta ggtcaacgta aaggtgaaat ggtcgacatg
     4741 gtaacgacag acaatggctt aacacgcctt atctttaacg tccctgcacg tggcttaatc
     4801 ggttatacga cagaatttat gtcaatgaca cgtggttacg gtattatcaa ccatacattt
     4861 gatgaattta gaccacgcat taaaggacgt attggtggcc gtcgtaacgg tgtacttgtc
     4921 tcaatggacc aaggttcagc gagtgaatat gcgattttag ggcttgagga ccgcggtatc
     4981 aactttatgg aaccaggaac tgaagtatac gaaggcatga ttgttgggca aaacaaccgt
     5041 gaaaatgatt taacagtgaa tattacaaaa gttaaacatc aaacaaacgt gcgttcagcg
     5101 acgaaagacc aaactgaaac gatgaaaaag ccacgtaaat tatcattaga agaagcatta
     5161 gaattcatta atgatgatga gcttgtggaa gtaacgcctg aaaatgtacg tttaagaaag
     5221 aaaatcttaa ataaagggca acgtgaaaaa gaagcaaaac gtatcaaaca aatgatggaa
     5281 tctgaagaaa attaatttaa ttcgtcattg aatcatattt tgaaagagct tggagagtga
     5341 aaatcttcag gctctttttt aattttttga aggcagtgca catttttgaa tggtagtcaa
     5401 tgctgatcac ttttctctta aacagaccgt aagccatcga ggaaaggggt atacgctcat
     5461 ttactataaa ccaataaat
//
LOCUS       DANHOL010000141         5471 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.143, whole genome shotgun sequence.
ACCESSION   DANHOL010000141 DANHOL010000000
VERSION     DANHOL010000141.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 5471)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5471)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5471
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.143"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(189..470)
                     /locus_tag="PTC08_001975"
     CDS             complement(189..470)
                     /locus_tag="PTC08_001975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="holin"
                     /protein_id="HDK5683472.1"
                     /translation="MNKFKTNFGVRTRNPHFWAQMVASIFMPILVYYGVTAKQIASWG
                     TLFKLVTDAVSNPYVFATIGVSAYNVYADNTTPGFGDSVRALSYKKPKA"
     gene            complement(937..1197)
                     /locus_tag="PTC08_001976"
     CDS             complement(937..1197)
                     /locus_tag="PTC08_001976"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683473.1"
                     /translation="MIRGLIEKVEDVALRAIIAYIETQIDSHDQRIAKLEDNTKLSDE
                     QLSKVIAQIESDSETWKLIKKTFITTIVGGISGYILIRLGMK"
     gene            complement(1264..1524)
                     /locus_tag="PTC08_001977"
     CDS             complement(1264..1524)
                     /locus_tag="PTC08_001977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683474.1"
                     /translation="MAKEIQGKSTSYILVQVDSESNEKALMRDSYSGTYYATEELAFA
                     KSIKSVASAKKVESALEILHEDEDGESSITFKVMQVDVERKR"
     gene            complement(1544..1954)
                     /locus_tag="PTC08_001978"
     CDS             complement(1544..1954)
                     /locus_tag="PTC08_001978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1617 family protein"
                     /protein_id="HDK5683475.1"
                     /translation="MKLTLKNVEINKVSTFMYKLELKAKQSRSRTKFMRLLDEKQEEY
                     KEGNDELLSMYAVKDEAGQPKIVDNQYEFENGNLEKYIDERAELDNEEVIINLEDYPK
                     VFETLFEVLDELDIQLKEEDAVTYDRLCEVFRVE"
     gene            complement(1976..2461)
                     /locus_tag="PTC08_001979"
     CDS             complement(1976..2461)
                     /locus_tag="PTC08_001979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683476.1"
                     /translation="MFTNTEGTTSPAVVLGANRSGSVDPKRGDFAGIVAHSYANPYSS
                     TGIYSDKVYFDSHGGEPNTGGWTLENYRKSGKMRAFFGNNSVEYSYELGQANAQFYSV
                     WTQGLNDKFKLVTYRSGNAGLTSWNGRYGIVISNHSVELLYNNAVYDVGNILQDSTWK
                     V"
     gene            complement(2583..2828)
                     /locus_tag="PTC08_001980"
     CDS             complement(2583..2828)
                     /locus_tag="PTC08_001980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683477.1"
                     /translation="MSEIRRGSISAKFAAELRKEVANDFGGGQTDSLDYYFEKFMRHQ
                     VTKDLSKHTIKYYNERYSIYRKWRVDNDEDLTLDVIN"
     gene            complement(3175..3248)
                     /locus_tag="PTC08_001981"
     tRNA            complement(3175..3248)
                     /locus_tag="PTC08_001981"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3214..3216),aa:Gly,seq:tcc)
     gene            complement(3282..3356)
                     /locus_tag="PTC08_001982"
     tRNA            complement(3282..3356)
                     /locus_tag="PTC08_001982"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3321..3323),aa:Gly,seq:tcc)
     gene            complement(3371..3445)
                     /locus_tag="PTC08_001983"
     tRNA            complement(3371..3445)
                     /locus_tag="PTC08_001983"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3411..3413),aa:Cys,seq:gca)
     gene            complement(3454..3525)
                     /locus_tag="PTC08_001984"
     tRNA            complement(3454..3525)
                     /locus_tag="PTC08_001984"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3491..3493),aa:Gln,seq:ttg)
     gene            complement(3542..3614)
                     /locus_tag="PTC08_001985"
     tRNA            complement(3542..3614)
                     /locus_tag="PTC08_001985"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3579..3581),aa:His,seq:gtg)
     gene            complement(3617..3690)
                     /locus_tag="PTC08_001986"
     tRNA            complement(3617..3690)
                     /locus_tag="PTC08_001986"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3656..3658),aa:Trp,seq:cca)
     gene            complement(3698..3781)
                     /locus_tag="PTC08_001987"
     tRNA            complement(3698..3781)
                     /locus_tag="PTC08_001987"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3745..3747),aa:Tyr,seq:gta)
     gene            complement(3788..3863)
                     /locus_tag="PTC08_001988"
     tRNA            complement(3788..3863)
                     /locus_tag="PTC08_001988"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3828..3830),aa:Thr,seq:tgt)
     gene            complement(3872..3944)
                     /locus_tag="PTC08_001989"
     tRNA            complement(3872..3944)
                     /locus_tag="PTC08_001989"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3909..3911),aa:Phe,seq:gaa)
     gene            complement(3955..4031)
                     /locus_tag="PTC08_001990"
     tRNA            complement(3955..4031)
                     /locus_tag="PTC08_001990"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3995..3997),aa:Asp,seq:gtc)
     gene            complement(4046..4119)
                     /locus_tag="PTC08_001991"
     tRNA            complement(4046..4119)
                     /locus_tag="PTC08_001991"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4083..4085),aa:Met,seq:cat)
     gene            complement(4137..4229)
                     /locus_tag="PTC08_001992"
     tRNA            complement(4137..4229)
                     /locus_tag="PTC08_001992"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4191..4193),aa:Ser,seq:tga)
     gene            complement(4238..4311)
                     /locus_tag="PTC08_001993"
     tRNA            complement(4238..4311)
                     /locus_tag="PTC08_001993"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4275..4277),aa:Ile,seq:cat)
     gene            complement(4337..4410)
                     /locus_tag="PTC08_001994"
     tRNA            complement(4337..4410)
                     /locus_tag="PTC08_001994"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4374..4376),aa:Met,seq:cat)
     gene            complement(4441..4516)
                     /locus_tag="PTC08_001995"
     tRNA            complement(4441..4516)
                     /locus_tag="PTC08_001995"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4481..4483),aa:Ala,seq:tgc)
     gene            complement(4539..4612)
                     /locus_tag="PTC08_001996"
     tRNA            complement(4539..4612)
                     /locus_tag="PTC08_001996"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4576..4578),aa:Pro,seq:tgg)
     gene            complement(4626..4699)
                     /locus_tag="PTC08_001997"
     tRNA            complement(4626..4699)
                     /locus_tag="PTC08_001997"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4663..4665),aa:Arg,seq:acg)
     gene            complement(4717..4805)
                     /locus_tag="PTC08_001998"
     tRNA            complement(4717..4805)
                     /locus_tag="PTC08_001998"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4769..4771),aa:Leu,seq:taa)
     gene            complement(4812..4886)
                     /locus_tag="PTC08_001999"
     tRNA            complement(4812..4886)
                     /locus_tag="PTC08_001999"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4852..4854),aa:Gly,seq:gcc)
     gene            complement(4890..4971)
                     /locus_tag="PTC08_002000"
     tRNA            complement(4890..4971)
                     /locus_tag="PTC08_002000"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4935..4937),aa:Leu,seq:tag)
     gene            complement(4976..5048)
                     /locus_tag="PTC08_002001"
     tRNA            complement(4976..5048)
                     /locus_tag="PTC08_002001"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(5013..5015),aa:Lys,seq:ttt)
     gene            complement(5053..5128)
                     /locus_tag="PTC08_002002"
     tRNA            complement(5053..5128)
                     /locus_tag="PTC08_002002"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(5093..5095),aa:Thr,seq:tgt)
     gene            complement(5152..5227)
                     /locus_tag="PTC08_002003"
     tRNA            complement(5152..5227)
                     /locus_tag="PTC08_002003"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(5192..5194),aa:Val,seq:tac)
     gene            complement(5240..5354)
                     /gene="rrf"
                     /locus_tag="PTC08_002004"
     rRNA            complement(5240..5354)
                     /gene="rrf"
                     /locus_tag="PTC08_002004"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
BASE COUNT         1553 a         1321 c          973 g         1624 t
ORIGIN      
        1 gtcattttca tcaatcaatt gatatctcat cacagattta tcgccttgct tgatcctgtt
       61 tccgtctcct aaattcaaga cgtttaatac gattgtctgc aaatagtcca cctcttcctc
      121 gataattcaa tgcaaaatac gaataaaata caaataaaaa agacgcccat ttgagcgact
      181 aatttatctt atgctttcgg tttcttatag cttaatgctc gcacactatc tccgaatcct
      241 ggtgtcgtat tatctgcgta tacattgtat gctgatacgc caattgttgc aaatacgtat
      301 ggattactta cagcgtctgt aactaattta aacaacgttc cccatgacgc aatttgcttc
      361 gcagtaacac cgtagtacac caaaattggc ataaaaatag acgcaaccat ttgcgcccaa
      421 aagtgtggat ttctcgttct aacaccgaag tttgttttaa atttattcat ttgtattttc
      481 cctttgttcg ttttattttc acttctgttc gtctaattct gctacaattt gattctttat
      541 tttcgcaact tttctacgtt catcttcatc tataatacgc atcaaattac ggaatattaa
      601 agccaacaca agcaccatta tccctaaccc aaattcggat agttgagcag aaagctactc
      661 gtcactatac cgaaataaaa gaatccgata gtattaaccg ccaattttag tatcggtctc
      721 ttcgtaaaaa atccgattag ataaaatatt gctacgctta aagatatatg caaaagcgat
      781 gattgactac cgagaaggtt aacgtaacct ttgtaaacat cgttgtcaat cttactaaat
      841 aacgatggct ctaacgcaag tgtaaatgtt acatacaatg cgtaaaagaa tatgacgatt
      901 tctatcgccg ccggtttcct aatcattctt aacctcctac ttcattccaa gacggattaa
      961 aatgtaacca cttataccgc caacaatcgt agtaataaac gtcttcttaa tcaatttcca
     1021 agtttcagaa tctgattcta tctgcgctat tactttcgac aattgttcat ctgacaactt
     1081 cgtattatct tccaacttcg caatgcgttg atcatgcgaa tctatttgtg tttcgatata
     1141 agcgatgatg gcacgtaacg ctacgtcttc tactttttct atcaatccac gtatcacgtt
     1201 tctctaccgc cttttatttt cttgttgtta tttgcgcatt ttcactgctt tataactact
     1261 cttctaccgc tttctttcaa catctacttg cataacttta aacgttattg agctttctcc
     1321 gtcttcatct tcgtgaagta tttctaacgc cgattctacc ttcttcgctg atgccacact
     1381 cttaatcgat ttagcaaatg ctagttcctc cgtagcgtaa tacgtcccag aataagagtc
     1441 acgcatcaac gctttctcat tactttcact atccacttga actagaatat agcttgtcga
     1501 cttaccttga atctcttttg ccataaatta ccacccctta tatttattca acgcggaata
     1561 cttcgcacaa tctatcgtaa gtaacagcgt cctcttcttt caattgaata tctaactcat
     1621 ctaaaacttc aaatagagtt tcgaacactt tcgggtaatc ttcgagattg ataataactt
     1681 cttcgttatc taattccgca cgctcatcga tatatttttc taagttacca ttttcgaatt
     1741 catattgatt gtctacaatc ttaggctgcc ctgcctcgtc tttaactgcg tacatactta
     1801 acaattcatc gttaccttct ttatattcct cctgcttttc gtctagcaat cgcataaatt
     1861 tcgttcttga cctactttgt ttcgctttta gttctaactt atacataaac gtactaactt
     1921 tatttatttc gacatttttt aatgttaact tcactaatct tcctccttat tcatattaaa
     1981 ctttccaagt actatcttga agtatatttc ctacatcata gacagcgttg ttatataaca
     2041 gctccacact atgatttgat atcactatac cgtaacgacc attccaacta gtaagacctg
     2101 cattcccact tctatatgtc acgagtttaa acttatcatt caaaccttgc gtccaaactg
     2161 aatagaactg cgcattagct tgccctaatt cataactata ttcgacagag ttattaccga
     2221 aaaaggctcg cattttacca cttttacgat aattttcaag cgtccaacca cctgtattag
     2281 gctcacctcc atgactatcg aaataaactt tatctgaata tattcctgta gaactatacg
     2341 gatttgcata agagtgcgct actattcccg caaaatctcc acgtttagga tcgactgaac
     2401 cacttctatt agctcccaac actactgccg gacttgtagt tccttctgta ttcgtaaaca
     2461 ttaaaaaacc taccccatct ttatttttat atttaagtat attcgaggat gtgtggaagt
     2521 cgatatgtga actcccgtaa aaatcgagtg agttaccgtt taaattctat ttaacagcac
     2581 cattagttga ttacatctaa cgttaaatct tcatcgttat ctaccctcca tttacgatag
     2641 atagaataac gctcattata atatttaatc gtatgtttcg ataaatcttt agtcacctga
     2701 tgtcgcataa acttttcgaa ataataatcg agtgaatcag tttgacctcc gccaaaatca
     2761 ttcgccactt ccttacgtaa ctctgcggca aacttggccg aaatggaacc tcgtctaatt
     2821 tccgacataa aaaatacgcc tacttttctt agagacgttt tcgttgttct tcgaaatata
     2881 gtacctttac gagaatccca ctacgagaat cccgcgaaag gctttcgaaa tatgtgcgat
     2941 tgtaatcaca acacagtcga aattttaggc aataaaaaat ccgtctaaat ccacatccta
     3001 cgtgtgattc aacggtttgc cttcgtaaaa atttatgaat atgtatgcgt ataatatacg
     3061 aaaataaatt tcatgagata tcgtgaaacc taccatttac ttttgagtcc cgcgcgtctg
     3121 ccaattccgc cacaccggca taatacaaaa aaatccaata tgtcattgga aaaatggagc
     3181 ggaagatagg acttgcacct atacctcttt ccgggaagga aagtgttcta gaattgaact
     3241 actcccgcat catgagtgat taacttgaat ttaaaatgat ttggagcgga agataggact
     3301 tacacctata cctctttccg ggaaggaaag tgttctaaaa attgaactac tcccgcatgt
     3361 ttcatatcaa tggaggcggc aaccggattt gaaccggtga atagaggttt tgcagacctc
     3421 ggccttacca cttggctatg ccgccaaaag taactgggct agctggattc gaaccagcga
     3481 gtgacggagt caaagtccgt tgccttaccg cttggctata gcccattaat tttaaataaa
     3541 gggcggttga tgggaatcga acccacgaat gtcggaacca caatccgatg cgttaaccac
     3601 ttcgccacaa ccgccatggc aggggcagta ggaatcgaac ccacatcaaa ggttttggag
     3661 acctctattc taccgttgaa ctatgcccct attgatatgg tggagggggg cagattcgaa
     3721 ctgccgaacc cgaaggagcg gatttacagt ccgccgcgtt tagccacttc gctacccctc
     3781 caagacatgg tgccggccag aggacttgaa cccccaacct actgattaca agtcagttgc
     3841 tctaccaatt gagctaggcc ggcaaaaaaa gtggttcagg acggaatcga accgccgaca
     3901 caaggatttt cagtcctttg ctctaccgac tgagctactg aaccatttta ataatggcgg
     3961 tcccgacggg aatcgaaccc gcgatctcct gcgtgacagg caggcgtgtt aaaccgctcc
     4021 actacgggac cacttataaa taatattgcg ggaggcggat ttgaaccacc gaccttcggg
     4081 ttatgagccc gacgagctac cgaactgctc catcccgcgg taataaaaaa taataatggc
     4141 ggaggaagag ggattcgaac ccccgcgagc cgttaagccc ctgtcggttt tcaagaccga
     4201 tcccttcagc cagacttggg tattcctccg aattatatgg accttgcagg actcgaacct
     4261 gcgaccgaac ggttatgagc cgttagctct aaccaactga gctaaaggtc ctaataatat
     4321 tttcaactaa aattagtggc ggcggagggg atcgaacccc cgacctcacg ggtatgaacc
     4381 gtacgctcta gccagctgag ctacgccgcc ttatgtagtt gtattagtat taaatttaaa
     4441 tggtggagac tagcgggatc gaaccgctga cctcctgcgt gcaaagcagg cgctctccca
     4501 gctgagctaa gcccccatat aaataatttt aaaagctatc gggaagacag gatttgaacc
     4561 tgcgacccct tggtcccaaa ccaagtgctc taccaagctg agctacttcc cgtaaggtaa
     4621 tgtagcgcgc ccgataggag tcgaacccat aaccttttga tccgtagtca aacgctctat
     4681 ccaattgagc tacgggcgca tatgaaacag aaacaatggt gccgaggacc ggaatcgaac
     4741 cggtacggtg atctctcacc gcaggatttt aagtcctgtg cgtctgccag ttccgccacc
     4801 ccggcaaata atggagcaga agacgggatt cgaacccgcg accccaacct tggcaaggtt
     4861 gtattctacc gctgaactac ttctgcatat gcgggtgaag ggagtcgaac ccccacgccg
     4921 taaggcgcta gatcctaagt ctagtgcgtc tgccaattcc gccacacccg caaagtgagc
     4981 catagaggat tcgaacctct gaccctctga ttaaaagtca gatgctctac caactgagct
     5041 aatggctcat catggtgccg gccagaggac ttgaaccccc aacctactga ttacaagtca
     5101 gttgctctac caattgagct aggccggcta ctcatattta ttttttaaaa atggtggaga
     5161 atgacgggat cgaaccgccg accctctgct tgtaaggcag atgctctccc agctgagcta
     5221 attctccaat tatgtaataa cctggcaccg tcctactctc gcggaacgta agtccgacta
     5281 ccatcggcgc taaagagctt aacttctgtg ttcggcatgg gaacaggtgt gacctctttg
     5341 ccattggcac cagattaagt tgttgaatgt tatacattca aaactagata gtaagtatat
     5401 ttatcacaag cattacctta tgaacaatta tattgattaa gtcttcgatc gattagtatt
     5461 cgtcagctcc a
//
LOCUS       DANHOL010000142         5447 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.144, whole genome shotgun sequence.
ACCESSION   DANHOL010000142 DANHOL010000000
VERSION     DANHOL010000142.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 5447)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5447)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5447
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.144"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            39..428
                     /locus_tag="PTC08_002005"
     CDS             39..428
                     /locus_tag="PTC08_002005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YisL family protein"
                     /protein_id="HDK5683478.1"
                     /translation="MFLINVHIVSWIVLLILFYASYENYSNKQGPTLLFKSLHMATRL
                     FMLLVLITGFWLAIKAFSAPGVSHMLMTLKMVGGIAVISLIEVTLTRKKKKAPSRGLF
                     IATFIVAIVTIILGAILPWGPITGLFH"
     gene            complement(532..1857)
                     /locus_tag="PTC08_002006"
     CDS             complement(532..1857)
                     /locus_tag="PTC08_002006"
                     /EC_number="1.8.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-disulfide reductase"
                     /protein_id="HDK5683479.1"
                     /translation="MKKHIIVVGAVAGGATSASQIRRLDKDSRITVYEKDSFMSFANC
                     GLPYYLGNVIEERDDILSTNPEKFKAYKDIDVKVKHEVLKIDDKKQTVTVKNHFTGET
                     FEDAYDALVLSPGARASQLNFDVPHLFTLRNMDDTDQIDTYIRQYNVKTVLIVGAGYV
                     SLEMVENMHHRGLHPTLIHRSEAVNKLMDQDMNSVIFDALNQYNIPYRLNEEIKSIDG
                     HTVTFTSGAVEDYDLIIAGVGVRPNSEFIQNSGIQLDAKGYIPVNDKFETNIPNIYAV
                     GDIVTSFYRHVDLPAHVPLAWGAHRGASIIAEQIAGHPEVTFKGYVGANIVKFFDYTL
                     ASTGISPQELKNFDYQMVEVNLYTHAGYYPGNSKVHLRAYFDKETRRILRAAAVGQKD
                     VDKRIDVLTMALMHQATIDELTEFEVAYAPPFAHPKDLINMLGYKARNL"
     gene            complement(1888..2712)
                     /locus_tag="PTC08_002007"
     CDS             complement(1888..2712)
                     /locus_tag="PTC08_002007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HDK5683480.1"
                     /translation="MKQHLICLDLDGTLLNDEKEIPEYTFRVLKALQQQGHAIIIATG
                     RPYRASQRYYNELGLDTPIVNFNGAFVHHPYDETFPVQHHRLDEGLATSIIETLKNMK
                     VKNMIAEVKDCVFLDQPDPRLFEGFTMGNPVTKVGDLRENLNEDPTSLLIEAEEAMIP
                     RVKQVLTRFYAENIEHRRWGAPFPVIEIVKKGISKAVGIDIVKDCLQIEHDHIIAFGD
                     EDNDLEMIKYATHGIAMGNAIDELKHVAKETTLSNNEDGIGIYLNRFFNLNMPKDK"
     gene            2826..3134
                     /locus_tag="PTC08_002008"
     CDS             2826..3134
                     /locus_tag="PTC08_002008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002465312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-sulfur cluster assembly factor"
                     /protein_id="HDK5683481.1"
                     /translation="MEEALKDSILGALENVIDPELGIDIVNLGLVYKVDLDDDGLCTV
                     EMTLTSIGCPLGPQIVDQVKTVLAELPEIQDTEVNIVWNPPWNKDMMSRYAKIALGIS
                     "
     gene            3404..5248
                     /locus_tag="PTC08_002009"
     CDS             3404..5248
                     /locus_tag="PTC08_002009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyltransferase"
                     /protein_id="HDK5683482.1"
                     /translation="MFVWNFNQRDRKPINPRYMPGLDGVRAVAVIAIIIYHLNPQWLS
                     GGFLGVDTFFVISGYLITSLLLTEYHNTGKIKLMSFWLRRVKRLIPAVLFLVMGVIVL
                     SLIFMPTEIQKVRADSIAAIFYVSNWWYIMQNVDYFEQFAVQPLKHLWSLAIEEQFYL
                     VFPIVLLSLLSFIRRLKSIRIIFLILLVISMIAMMVLYVPNENVARVYFGTDTRIQTL
                     LMGVLLALVWPPFQLKAKVNRQMRTMIDTAGVVGLAILFICFKFVSETNSILYYGGFF
                     LISTVTLLVIASSVHPSGYFAKFLGNKVFTFIGSRSYSLYLWHYPIIVLIHHQFVQGQ
                     IPPLVYVVEILLMVLMAEFSYKFIEQPFRKEVFNIFAFNHLKNWRSQKVLRTWLVIIL
                     LIPTLLVMVGSFNRFAQKNSTRVTEVNTEEIDKLITQPLPLPQLEIDGFVVKGNKQKY
                     ASWKPLLIGDSVMVDIGDDFRSFVPKADINGKVGRQLVEATSLAKRQYQSYRDKNDIV
                     VLELGTNGDFTEEQLNSLLEQFGEADIYLVNTRVPRSYESHVNQVLAKAAKKRANVTL
                     VDWYSRSENHTEYFAPDGIHLQPPGVHALTNSIIQAIEKNHGTKKKNK"
BASE COUNT         1600 a          959 c         1075 g         1813 t
ORIGIN      
        1 tgattgaaaa gatacgcaac ataaggaggt gaccgaacat gtttttaatc aacgtgcata
       61 ttgtcagttg gattgttctt ttgattttat tttatgcgtc gtatgaaaat tattcaaata
      121 agcaaggccc gacgctatta tttaagtcac tccacatggc gacacgatta tttatgcttc
      181 tcgttttaat tacaggcttt tggctagcaa tcaaagcatt ttcagctccg ggtgtgagtc
      241 atatgttgat gactttgaaa atggttggag gtatagctgt tattagttta attgaagtga
      301 ctttaacgcg taagaagaaa aaagcgccaa gtcgaggtct attcattgct acttttattg
      361 tggctattgt gaccattatt ttaggcgcta ttttaccgtg gggcccgatt acaggcttat
      421 ttcattaggg aacgcaagtt taaattggga gtcattcatg agcgtatagt tagtcataca
      481 agatgtgaaa agcgagggat atgtcaccat gacccctcgc tttttttcat cttatagatt
      541 gcgcgcttta taacctaaca tattaattaa atctttaggg tgtgcaaatg gaggcgcata
      601 agcaacttca aattctgtca attcgtcaat tgttgcttga tgcattaatg ccatagtcaa
      661 gacgtcaata cgcttatcaa catctttttg tcccactgcg gctgctctta aaatgcggcg
      721 tgtctctttg tcaaagtatg ctcttaaatg gactttactg ttgccagggt aataaccagc
      781 gtgtgtataa aggttgactt ccaccatttg ataatcaaag ttttttaatt cttgaggtga
      841 gattcctgta cttgctaagg tgtaatcgaa aaatttaaca atattggcac cgacgtaacc
      901 tttaaatgtc acttctggat gacctgctat ttgttcagcg atgatacttg caccgcgatg
      961 tgcaccccaa gcgagtggta cgtgtgcagg gaggtcaacg tgacgataaa agcttgtgac
     1021 aatatcacca accgcataaa tgtttggaat attcgtttca aatttgtcat tgactggaat
     1081 atagcccttt gcatcaagtt gaataccaga attttgaatg aactctgagt tagggcgaac
     1141 acccacgcca gcaatgatta aatcatagtc ttcaacagca cctgaggtaa atgtcactgt
     1201 atgcccatca atagacttga tttcttcgtt taaacggtat ggaatattgt actggttcaa
     1261 cgcatcaaaa atgacactgt tcatgtcttg atccatcagt ttattcactg cttcagaacg
     1321 gtgaatgagt gttggatgca gaccgcgatg atgcatattt tctaccattt ccaagctgac
     1381 gtacccagca ccgacaatta aaacagtttt cacattgtac tgacggatat atgtatcaat
     1441 ctggtcagta tcatccatat ttcgtaacgt gaaaagatgt gggacatcga aattaagttg
     1501 acttgcacgt gcaccaggac tcaatactaa agcatcataa gcgtcttcaa atgtttcacc
     1561 tgtaaaatgg tttttgactg tcactgtctg ttttttatca tcgattttga gcacttcatg
     1621 ttttactttt acgtcaatgt ctttataagc tttaaacttt tctggatttg tcgataaaat
     1681 atcgtctctt tcttcgatga catttccaag gtaataaggt aaaccacagt tcgcaaagct
     1741 cataaaacta tctttttcat atactgtaat acggctgtct ttgtctaaac gtcgaatttg
     1801 gcttgcactt gttgcgccac cagctactgc accgacgaca ataatatgct tcttcatgtt
     1861 aatatctcct ttttctatct cttattttta tttatcttta ggcatattta aattaaagaa
     1921 acgattcaaa taaatcccga taccgtcttc attattagat aatgttgttt cttttgcgac
     1981 atgtttcagt tcatcgatgg catttcccat tgcaatacca tgagtcgcat acttaatcat
     2041 ttctaaatca ttatcttcat caccaaatgc aataatatgg tcatgctcga tttggagaca
     2101 gtctttcacg atatcaattc cgactgcttt actgatgccc tttttgacaa tttcaatgac
     2161 agggaaaggg gcgccccaac gacgatgttc aatattttca gcatagaagc gtgtcaacac
     2221 ttgtttcaca cgtggaatca tggcttcttc tgcttcaatt aatagtgaag tcggatcttc
     2281 atttaagttt tcgcgaagat cgcccacttt tgttacagga ttgcccatgg taaagccttc
     2341 aaaaagacga gggtcaggtt ggtctaaaaa gacacaatct ttcacttcag caatcatatt
     2401 tttgactttc atatttttca aagtttcaat aatgctcgtt gcaagtcctt catctaaacg
     2461 atggtgttga actgggaatg tctcatcata agggtgatga acaaatgcgc cattaaagtt
     2521 aacgataggc gtatccaatc caagctcgtt gtagtaacgt tgacttgcac gataagggcg
     2581 gcctgttgca atgatgatgg catgcccttg ttgttgtagt gcttttaaca cacgaaatgt
     2641 atattctgga atttcttttt catcatttaa aagtgttcca tctaaatcca aacaaattaa
     2701 atgttgtttc attcatactc tccttaatac caagtttcag tgtattcata tcatagcatt
     2761 ttattgtgga aaagtgggga ttttgttata ttgttactag tgaaattgaa aatgaggtga
     2821 tacggatgga agaggcactt aaagatagta ttttaggcgc gcttgaaaat gtcattgacc
     2881 ctgaattagg gattgatatt gtcaatttag gtcttgtata taaagttgat ttagatgatg
     2941 atggtttatg tactgtagaa atgacactca cttcaatcgg ttgtccatta gggccgcaga
     3001 ttgttgacca agttaaaaca gtattagcag aacttccaga gattcaagat accgaagtga
     3061 acatcgtttg gaatccacca tggaataaag acatgatgtc acgttatgct aaaattgcgt
     3121 taggtatcag ctaatatttt gaagttgtta aaggggcttt ctcaattgtg aatgcaattt
     3181 tgaaggtctt tttatttacc tatggggagc ataccaactt actgcactct cccatgacac
     3241 cttgaagtga cagcttaata gcatcattgg aagtgtagcg ataacgatgt taaaaaattt
     3301 tagacacgta ataaaacgct tacatgaatt ttgcgaatat aattgcacga atgaaaacaa
     3361 aagtatacaa tatataatca atacattaaa tttggaaaga atgatgtttg tgtggaattt
     3421 taatcaacga gacagaaaac ctatcaaccc gcgatacatg cctgggttag acggtgttag
     3481 agcggttgca gttatcgcaa tcattatcta tcatctcaat ccccaatggt tgtcgggtgg
     3541 ctttctaggg gtagatacat tttttgtaat ttctggttat ttaattacga gtttgttatt
     3601 aacagagtat cataatacag gaaaaattaa attgatgtca ttttggctaa gacgtgtgaa
     3661 acgactgatt cctgcagtgc tctttttagt catgggtgtc attgtgctga gcttaatttt
     3721 catgcctacg gaaattcaaa aagtacgtgc ggatagtatt gcggcaatat tttatgtgtc
     3781 gaattggtgg tacatcatgc aaaatgtcga ttactttgaa caatttgcag tacaaccatt
     3841 aaaacattta tggtcattag caatagaaga gcaattttat ctcgtgtttc cgattgtgtt
     3901 actcagtttg ttaagcttta tacgtcgtct gaaatcaata cgcatcatat ttttaatttt
     3961 actcgtcatc tccatgatcg cgatgatggt gttatatgta ccgaacgaaa atgttgcacg
     4021 tgtttatttt ggtactgata cacggataca aacattattg atgggggtat tgcttgcact
     4081 ggtttggcca ccatttcaat taaaagcaaa agtgaaccgt caaatgcgca cgatgatcga
     4141 tactgcgggt gtcgtcggct tggcgatttt gttcatttgt ttcaagttcg tatctgagac
     4201 gaatagtatc ctgtattacg gtggattttt tctcatttca acggtcacat tattagttat
     4261 cgcgagcagt gtgcatcctt cagggtattt tgcgaagttt ttaggtaaca aagtttttac
     4321 ttttattggt agtcgttcat atagtttgta tttatggcat tatccgatta ttgtgttaat
     4381 tcaccatcag ttcgtgcaag gccaaattcc acctttagtt tatgtcgttg aaattttatt
     4441 aatggtgctc atggcggaat tttcttataa atttatcgaa cagccattta gaaaagaagt
     4501 ctttaacatt tttgccttta atcatttgaa aaattggcgt tcacaaaaag ttttacggac
     4561 atggttagtg attattttac tcattccaac gttactcgtg atggtgggga gctttaaccg
     4621 tttcgcccaa aaaaatagta cgcgagtgac agaagtaaat accgaagaaa ttgataaatt
     4681 gattacccag ccactgccgt taccgcaact tgaaattgat ggctttgtcg tgaaagggaa
     4741 taagcaaaaa tatgcatcat ggaagccgtt attaattggt gattccgtga tggtagacat
     4801 tggcgatgac tttagatcat ttgtacctaa agcagacatt aacggtaaag tgggacgtca
     4861 attggtcgaa gctacttctc ttgctaaacg acaatatcaa agctatcgtg ataaaaatga
     4921 cattgtcgtc cttgaattag ggacaaatgg tgattttaca gaagaacagt tgaacagttt
     4981 gctcgaacaa tttggcgagg ccgatattta tcttgtcaat acgcgcgttc cacgttctta
     5041 tgagtcacat gtgaatcaag tgttagcgaa agccgcgaaa aaacgagcga atgtgacgtt
     5101 agttgattgg tatagccgtt ctgaaaacca tacagaatat tttgcgccgg atggtattca
     5161 tttgcagcca ccaggtgtac acgcattaac gaacagcatt attcaagcga ttgaaaaaaa
     5221 tcacggtacg aagaaaaaga ataagtaaga aaataattgg ggaataagtc attaagatta
     5281 cccagtccct ttcctatgat ttgtcaaagg tgtgtgaatt aaaattgaca tcactaaact
     5341 caatcgtcca atgtttactt ttttgaatca agtgttagga tgtattcgat tatatggttt
     5401 cgtcagtgtg atgctttcta ataatcatat catttatcat tgactaa
//
LOCUS       DANHOL010000143         5414 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.145, whole genome shotgun sequence.
ACCESSION   DANHOL010000143 DANHOL010000000
VERSION     DANHOL010000143.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 5414)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5414)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5414
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.145"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            22..4188
                     /locus_tag="PTC08_002010"
     CDS             22..4188
                     /locus_tag="PTC08_002010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SH3-like domain-containing protein"
                     /protein_id="HDK5683483.1"
                     /translation="MVKKFGYKTPTIVALTLAGTAFSAHQANAAEQVAPEKTPTNVLD
                     DQYALKQADDAKQTTQGTTLAGSKEYKDPSQIDTTQVDTAAQTETPVERGQQDAQQPA
                     TTDEATSTDHTVSKGTNESASPATASIDEGTLNAQANSDETVTNRTQDATENVTKYPY
                     HSSEIDTHEDATVSPDTYHALDTHAQQPSAMDVSDSTSAQTEATQVNTSTNVNDKEAV
                     STTEDAPTTQHQAAVQSEANKEAKATTETAQNKTPQVEKKATATQNTAQLATGHQDIT
                     DKVSKRVAVTNETKADATTAKTQAPTSVTHQADTQAKTITDKKATTYSAQTATDQDID
                     ANPDGPTPPRVGGKGGPPASLSLQSTGQTAFRSAVASKPSAYQPKVKSSINDYIRKQN
                     YKVPVYEEDYSSYFPKYGYRNGVGKPEGIIVHDTANDNSTIDGEISYMKRNYQNAFVH
                     GFINGQRIVETQPTDYLAWGAGAIANERFIHIELVHVHSKEDFARQMNNMADYAATNL
                     QYYGLSPDSAEYDGRGTVWTHDAVSRFLGGTDHTDPHGYLKQHGYSFDALYDLINEKY
                     QVKMGYASPANSSSKPSTNTGLTVKNTTGFGRINTTNSGLYTTVYDQKGKATNQTNQT
                     LKVTKEATLNGNKFYLMSDAKSNQTLGWVKSNDATYQAAQAEKKVTKTYTVKPGTTVY
                     QVPWGASSQTVGKAAGTSNQSFKSTKEQTVAKTKWLYGTVGKVTGWINASSVVANDQK
                     PSTNTALKVTTDTGLGRIKDKNSGLYATVYDKTGKSTSATNQTLKVTKKASVNGQSFY
                     LVSDYAKGTNVGWVKQSDVEYQTSKAPSKVNQNYTIKSGAKLYQVPWGTSKQVAGTVT
                     GAATQTFKATQSQTVGKATYLYGTVGKLSGWINSTALAAQKTTTNVTKTISQIGQLNT
                     KNSGVKASIYDKTAKDASKWAGQTYKITKTASANNEDYVLLQNSTGGTPLGWFNVKDV
                     TTRNLGAETAVKGRYTVNSKTSGLYAMPWGTTKQRVDTLKNATSRLFTASKSVKVGND
                     TFLFGTVNQKLGWINQKDLTAVAAKVANMKTASNSAVKGAAITTLKKVEDYVITNKNG
                     YYYTKVGDSKTAGALKGFYQQIFKVEKTSLLNGITWYYGAFQNGTKGWIKAADIRSSF
                     IQHTAVSSTLKAALDKQMALTYPPQVQRVAGKWVNANRAETEKAMNTAALEKDPTLIY
                     QFLKLDKYQGLGVEELNKLLRGKGILEGQGAAFKEAAQKHNINEVYLMSHAFLETGNG
                     TSQLANGGHVDKNNKVVTNGKPKYYNMFGIGAIDTDALRNGFKTAEKYGWNTVSKAII
                     GGAKFIRDQYIGSGQNTLYRMRWNPEHPATHQYATDINWANVNAQRMKYFYDQIGETG
                     KYFDVDVYKK"
     gene            complement(4633..>5414)
                     /locus_tag="PTC08_002011"
     CDS             complement(4633..>5414)
                     /locus_tag="PTC08_002011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HDK5683484.1"
                     /translation="DIALTFLMAEISYQFIETPFRRYGFKTFYSKDKIWLTVIRTPFV
                     VAIIVIAALVLSGQFDYLAKQEKKASSYQTNHKNNGKDNEKPIENPAEKEQKAEKFDP
                     KKQSPLFIGDSLTVGMGYYLDEHYQKPTIDAQVGRSMGAAIQVARNYMSFNQKGQPVV
                     IQIGTNGDFDQDQLETLIKDFDKADVYLINTTVPRDYKDHVNQLLKKAADKHKHVTLV
                     DWNKVGVGHTEYFAYDGIHLEHPGIQKLVSELDKEMKANQS"
BASE COUNT         1916 a         1112 c         1009 g         1377 t
ORIGIN      
        1 ttatctaaaa ggagcaataa aatggtcaaa aaatttggtt ataaaacacc tacaatcgtt
       61 gcacttactt tggctggaac tgcattttct gcacaccaag ccaatgccgc tgaacaagtt
      121 gcacctgaaa aaacacctac gaatgtactt gatgatcaat acgcattaaa acaagctgat
      181 gatgcgaaac aaacgacaca aggaacaaca cttgcaggtt caaaagaata caaggatcct
      241 tcacaaattg atacgactca agtcgataca gcagcacaaa ctgaaacgcc cgtagaaaga
      301 gggcaacaag acgcacaaca acctgctaca actgatgaag cgacatcaac agatcatact
      361 gtatcaaaag gtacaaacga aagtgcatca cctgcaacag cttctataga tgaaggaaca
      421 ttaaacgcac aagccaattc agatgaaacg gttactaacc gtacacaaga cgccactgaa
      481 aatgtgacaa aatatcctta tcattcaagt gaaatcgata cacatgaaga cgcaactgtg
      541 tcaccagata catatcatgc actggacacg catgcgcaac aaccttcagc aatggatgta
      601 agcgattcaa catcagcaca aactgaagcg acgcaagtaa atacgtcaac aaatgtaaat
      661 gacaaagagg ccgtttcgac aacagaagat gcacctacta cacaacatca agcagctgta
      721 caatctgaag ccaacaaaga agcgaaggca actactgaaa cagctcaaaa taaaacacct
      781 caagttgaaa agaaagcaac agcaactcaa aatacagcac agttagcaac ggggcatcag
      841 gatattactg acaaagtctc aaaacgcgta gcagtgacaa atgaaacgaa agcggatgcc
      901 acaacagcga aaacacaagc acctacttca gtgacacatc aagctgatac acaagcaaaa
      961 acgataacag acaagaaggc aacaacttac agtgcacaaa ccgcaactga ccaagacata
     1021 gatgcgaatc cggacggtcc aacacctcca cgcgttggcg gtaaaggggg tccccctgct
     1081 tcactttcac tccaatcgac tggtcaaaca gcattccgtt cagctgtcgc tagtaaaccg
     1141 agtgcatatc aacctaaagt gaaatcgtct attaatgact atattcgtaa gcaaaactac
     1201 aaagtgcctg tatatgaaga agattattca agttacttcc ctaaatacgg ttatcgtaat
     1261 ggtgtcggta aacctgaggg catcatcgtg catgatacag caaatgacaa ctctacaatt
     1321 gatggcgaaa tcagttacat gaaaagaaat tatcaaaatg ctttcgtaca tggctttatt
     1381 aatggtcaac gtattgttga aacgcaacct acagattatt tagcatgggg tgcaggtgcg
     1441 attgcgaatg aacgctttat tcatatcgaa ctcgttcatg ttcacagtaa agaagatttc
     1501 gcacgtcaaa tgaacaatat ggcagattat gcggcgacga acttacaata ttatggcctt
     1561 tctccagata gtgcggaata tgatggtcgt gggacagttt ggacacatga tgctgtttct
     1621 agatttttag gtggtacaga ccataccgat ccgcacggct atttaaaaca acacggttat
     1681 tcctttgatg cgttgtatga tttaatcaat gaaaaatatc aagtgaaaat gggttatgcc
     1741 tcacctgcta actcgtcttc aaaaccatca acaaatactg gcttaacagt taaaaacaca
     1801 acaggtttcg gccgtattaa cacaacaaat agcggtttat atacgaccgt ttatgatcaa
     1861 aaaggtaaag cgacgaatca aacgaatcaa acgttaaaag ttacaaaaga agcgacgtta
     1921 aatggcaaca aattctattt aatgagtgat gcaaaatcta atcaaacact cggttgggtc
     1981 aaatcaaacg acgcaacata tcaagctgcc caagctgaga aaaaagtaac gaaaacgtat
     2041 actgtcaaac caggaacaac agtgtatcaa gtgccttggg gtgcctcatc tcaaacagta
     2101 ggcaaagctg caggtacgtc aaaccaatca ttcaaatcaa cgaaagaaca aactgttgcg
     2161 aaaacgaaat ggctttatgg gacagtcggc aaagtgacag gctggattaa tgcaagtagt
     2221 gttgtagcaa atgaccaaaa accatcgacg aataccgcac taaaagtaac aactgacact
     2281 ggtctcggtc gcattaaaga caaaaatagt ggtttatatg caacggtata tgataaaact
     2341 ggtaaaagca cttcagccac taaccaaaca ttaaaagtaa cgaaaaaagc aagtgtcaat
     2401 ggccaatcat tctatttagt atcagattat gctaaaggta caaacgttgg ttgggtgaaa
     2461 cagtcagatg tcgaatatca aacaagtaaa gccccttcta aagtgaatca aaattatacg
     2521 attaaatcgg gtgcgaaatt gtatcaagtg ccttggggta caagtaaaca agttgccggt
     2581 acagtgacag gtgctgcgac acaaacattt aaggcaacac aatctcaaac tgtaggtaaa
     2641 gcaacatact tgtatgggac agttggcaaa ttatctggtt ggattaattc aacagcatta
     2701 gcagctcaaa aaacaacaac gaatgttact aaaacaattt ctcaaatcgg tcaactgaac
     2761 acgaaaaata gcggtgtcaa agcttctatt tatgacaaaa cagcaaaaga tgcatccaaa
     2821 tgggcaggtc aaacttataa aattactaaa acagcttctg ccaataacga agactatgta
     2881 ttactgcaaa atagtacagg aggcacgcca ctcggttggt tcaatgttaa agacgtcaca
     2941 acacgcaact taggtgctga aacagctgtt aaaggtcggt acactgttaa tagtaaaaca
     3001 tctggcctct acgctatgcc ttggggtaca acgaagcaac gtgtcgatac attaaaaaat
     3061 gccacaagtc gtttatttac agcttcaaaa tcagttaaag tcggtaatga tacattctta
     3121 ttcggtacag tgaatcaaaa attgggctgg attaatcaaa aagacttaac agccgtagca
     3181 gcaaaagttg caaacatgaa aactgcatcg aatagcgcag tcaaaggtgc cgcaatcaca
     3241 actttgaaaa aagtagaaga ttatgtgatt acgaataaaa atggttatta ttacactaaa
     3301 gttggagatt caaaaacagc tggtgcttta aaaggttttt atcaacaaat ttttaaagtc
     3361 gaaaaaacat ctttactgaa cggcattact tggtactatg gcgcattcca aaacgggacg
     3421 aaaggatgga ttaaagcagc tgacatacgt tcatcattca ttcaacatac tgcggtcagt
     3481 agcacattga aagcagcact cgataaacaa atggcgctga cttacccgcc tcaagttcaa
     3541 cgtgtagccg gtaaatgggt caatgcgaat cgtgcagaaa ctgaaaaagc aatgaatacc
     3601 gcagcacttg aaaaagatcc gactctcatt taccaatttt taaaacttga taaataccaa
     3661 ggtcttggcg tagaagaact taataaattg ttaagaggca aaggcatttt agaaggtcaa
     3721 ggtgccgcat ttaaagaagc cgcacaaaaa cacaatatta atgaggttta cttaatgtct
     3781 cacgcatttt tagaaacagg taacgggact tctcaattag ccaatggcgg tcacgtagat
     3841 aaaaataata aagtcgtaac aaacggtaaa ccgaagtatt acaacatgtt cggtatcggt
     3901 gcaattgata cagacgcttt acgcaatggc tttaaaactg ctgaaaaata tggttggaat
     3961 acggtcagca aagcgattat cggtggcgca aaattcatcc gtgatcagta catcggttca
     4021 ggacaaaaca cattgtatcg tatgcgttgg aatccagaac accctgccac acatcagtat
     4081 gcgactgata ttaattgggc aaatgtgaac gcacaacgca tgaaatattt ctatgatcaa
     4141 atcggtgaaa caggtaaata tttcgacgtc gatgtatata agaagtagat acattagaaa
     4201 gcagctctag tcatctttat ggtgattaga gcttttttat tgattaaggt agtttgcaat
     4261 tggcttgatg ttaaaacatg tcactaggac tcactacagc gcacctgatc acccgcgctt
     4321 tactgatgtg cccaactgat aacactcatc cttaaatgcc tatttcacac cacatgttca
     4381 cacctcccta caaaatcaga gtcactcaca aaataaaaac tttacataaa attgcgttga
     4441 gacaagtccc atgggaacgc gagtccttaa ctatcaatca tccagacaaa tcatacaaat
     4501 cgaaatcatt ttataatctt gttgtacaac tatacttaaa ttaaagaaat gttatataaa
     4561 catgcaaaaa gcggtcaata gcattcacca tcaaccgctt cttctctatt ttgcttctgc
     4621 tttattttta gactaactct gattcgcctt catctcttta tccaactctg acacgagctt
     4681 ttgaattcct ggatgttcta aatgtatgcc atcatacgca aaatattccg tatgaccgac
     4741 accgacttta ttccaatcta ctaacgtcac atgcttatgt ttatctgccg cctttttaag
     4801 caattggttc acgtgatctt tatagtcacg tggcactgtc gtattgatta aataaacatc
     4861 ggctttatca aaatctttga tgagtgtttc taattggtct tggtcaaaat caccattcgt
     4921 accaatttga atgacgaccg gctgcccttt ttgattaaat gacatatagt ttctcgcaac
     4981 ctgtatcgct gcgcccattg aacgaccgac ttgtgcatca atagtaggct tttggtaatg
     5041 ctcatccaga taatacccca tccctactgt taaagagtca ccaataaaga gcggtgattg
     5101 ctttttagga tcgaactttt ctgctttttg ttccttttca gctggatttt ctattggttt
     5161 ttcattgtct ttaccattat ttttgtgatt cgtttgataa ctgctcgcct ttttctcttg
     5221 tttagcaagg taatcaaatt gaccactgag cactaatgct gctatgacga taatagccac
     5281 aacaaagggt gtacgaatca ccgttaacca aatcttatct tttgaataga aagttttgaa
     5341 accatagcgt ctaaatggcg tttcaatgaa ttgatatgat atttcggcca ttaaaaatgt
     5401 taacgcaata tcaa
//
LOCUS       DANHOL010000144         5335 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.146, whole genome shotgun sequence.
ACCESSION   DANHOL010000144 DANHOL010000000
VERSION     DANHOL010000144.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 5335)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5335)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5335
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.146"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            <1..983
                     /locus_tag="PTC08_002012"
     CDS             <1..983
                     /locus_tag="PTC08_002012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HDK5683485.1"
                     /translation="VLFITGLAQGLARENIALIDQFKSERFVIQKDVDQQLEKSNIDL
                     KTQQDIEENVKSAPLKLAMATMKHQDNKTDMLFATMPKEARPALKAGHLPEKANEVVL
                     NQKLAGEGVQIGDQVNIEGKDVTLKVVGFFDDAMYAHTNIAMTTDEGLKDIAGQHVAT
                     SLYFLNDVTAKQFKNIEGISGIEIVNKQDLTDAIPSYQAEQAPLNMMIVSLFVITAIV
                     LTAFFYVMTIQKTSEIGILKAIGVKTSHLLWSLLFQILFVTMLGVIIALLLITGLKAT
                     LPVTMPFFINSGMMLLVVVVFIIVAIVGALLSLVRVFKIDPIEAIGGGQV"
     gene            980..1669
                     /locus_tag="PTC08_002013"
     CDS             980..1669
                     /locus_tag="PTC08_002013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDK5683486.1"
                     /translation="MSLVVKDLVKTFGKGDAATKVLKGISFEVQPGEFVILNGMSGSG
                     KSTLLTIIGGLLSPTEGKIQLDGEDLGGLSQKALTDKRLKDIGFIFQASHLVPYLKVH
                     EQLELVGKEAGMDRQTAQQRAKMLLNEIGLSHRENVYPHMLSGGEKQRVAIMRAWMNQ
                     PKLLLADEPTASLDAKRATEVVEMIKQQVRQEGAIGIMVTHDQRLFDYADRIIYLNDG
                     ELMETATAMTV"
     gene            complement(1712..1975)
                     /locus_tag="PTC08_002014"
     CDS             complement(1712..1975)
                     /locus_tag="PTC08_002014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AbgT family transporter"
                     /protein_id="HDK5683487.1"
                     /translation="MLFFSLCIVLAIVTEVVSQLDTAVKHPGTDKTITARIILSHDGF
                     VVFLNGVLLTFMINLCTIKNREWETKMSQSLPIIYEKIVSEQN"
     gene            complement(2106..3059)
                     /locus_tag="PTC08_002015"
     CDS             complement(2106..3059)
                     /locus_tag="PTC08_002015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HDK5683488.1"
                     /translation="MNLLQILLLISYIIILTLIKIKPHLFLRIHSFTAVLYIHMLFIT
                     ISYITHADRLIWLMITLVIGLILLALTLYRHIQTYWHIIGRVITYHLAIVALIIGSLL
                     VIPLIPAVLTIPFQLLVQLAIVFLTAWQTYLFMTFTFLHHLPPVTRANIIVLGAGIYT
                     EAVTPMLKARLDRAIALSRQLEKFHIIVSGGQGPDEPISEALAMQRYLIQQGIAPKQI
                     TMEDQSTNTCQNIYYSKHYLALHQQPHTIIVTSSFHILRALRLAERQQLHAFGYGAPT
                     PHHWVSRELIRDYSGLLFQYPRVWALFTIVQVGICILNIFS"
     gene            3200..3664
                     /locus_tag="PTC08_002016"
     CDS             3200..3664
                     /locus_tag="PTC08_002016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HDK5683489.1"
                     /translation="MTHSNLMNQHVTFMGEFMTNVNALTAGLLKDLRSRYGISNEQSS
                     VLLMLSNDKSLTLTEITLRQGVNKAAVSRRIKKLVDLGLVKWVNMAYEYDKRLKYVAL
                     TEAGIDYVRASRNLIANLANEMLSDIPLEKIEQTRDMLELIDERIQGQLNQL"
     gene            3771..5165
                     /locus_tag="PTC08_002017"
     CDS             3771..5165
                     /locus_tag="PTC08_002017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="teicoplanin resistance protein VanZ"
                     /protein_id="HDK5683490.1"
                     /translation="MGQCAVCHHEKLPHQSVCPNCQNQILYSKTPSPQSPKQRDAAQS
                     SSSNNNKRPPSLKKVIPIAIVSFIIILLIILFLLLRNFNSPEAQAKILINAVNNEDNA
                     KVSNLLSSKENKVGRQEASTYIKFVKQEVGMKLFEKEVYDTVDGLNHETAVASYIKTR
                     EGQDVLRISKNGRRYLIFDNLSFLAPTKQAIVKPKEKATFEFDSDGAQKKVVAEAGQS
                     VSLGQFIPGSYAIDTVKTTDRGTYEGQLKFDFVNSKNETIPVTEDFKEAQVKLSLKNV
                     SDLKEIKVVINDEKIAQNKNDTYGPFPVNQDIKVYAEGEAYDHTFKTNTEVIKKDDVQ
                     SENKITVSFDKDEIEKYRQSKEKDTLNKIKDFFKKYTVSLNEAYESHDFDLISKYLKE
                     NTTNYEAMRSNVKGQNQYKFKNPVVIDVSRNADYYAVTVEKEDAQGRTIQSHYLLDGD
                     ENANHLKIVNYQNY"
BASE COUNT         1829 a          858 c         1118 g         1530 t
ORIGIN      
        1 tggtgctttt tattacgggg ttagcacaag gtttagcaag agaaaatatc gcactgatcg
       61 accagttcaa atcagaacgc tttgtcattc aaaaggatgt cgatcaacaa cttgaaaaat
      121 caaatatcga tttgaaaacg caacaagaca ttgaagaaaa tgttaaatca gcgccattaa
      181 aattagcaat ggcgacgatg aaacatcaag ataataagac ggatatgctt tttgcgacga
      241 tgccaaaaga agcgcgtccg gcattaaaag cagggcacct accagaaaaa gcaaatgaag
      301 tcgttttgaa tcagaaatta gcaggggaag gtgtccaaat tggggaccaa gtcaatatcg
      361 agggtaaaga cgtcacttta aaggtcgtcg gtttctttga tgatgcgatg tatgcacata
      421 caaatattgc tatgacaacg gatgaaggac tcaaagatat tgctggtcaa catgtcgcaa
      481 cgtcacttta ctttttaaat gatgtcacag caaaacaatt caaaaatatt gagggcattt
      541 ctggtatcga aatcgtcaac aaacaagatt tgacggatgc gattccgagc taccaagctg
      601 agcaagcacc actgaatatg atgattgtaa gtttatttgt gattacagca atagtactga
      661 cagcattttt ctacgttatg accattcaaa aaacgtcaga aattgggatt ttaaaagcga
      721 ttggcgttaa aacgtcacat ttattatgga gtttattatt ccaaatttta ttcgtgacga
      781 tgttaggggt catcatcgca ttattactca ttacagggtt aaaagcgacg ttacctgtca
      841 caatgccatt ctttattaat agtggcatga tgttactcgt cgttgttgtt ttcattattg
      901 tagctatcgt cggcgcatta ctttcattag tgcgtgtctt taaaattgat cctattgaag
      961 cgattggagg gggacaagta tgagtttagt cgtcaaagat ttagtgaaaa cattcggtaa
     1021 aggtgatgct gccacaaaag tgttaaaagg cattagcttt gaggtgcaac ccggtgaatt
     1081 tgttatttta aatgggatgt caggttctgg taaatctaca ctgttgacga ttatcggtgg
     1141 actgttatct cctactgaag gcaaaatcca attagacggt gaggatttgg gtggtttgtc
     1201 tcaaaaagca ttaaccgaca aacgtttgaa agacattggt tttattttcc aagcttctca
     1261 tttagttcct tatttaaaag tgcatgaaca attggaactc gtgggtaaag aagcggggat
     1321 ggaccgtcaa acagcacaac agcgtgcaaa aatgttatta aatgaaatcg gattgagcca
     1381 tagagaaaat gtttatccac atatgttatc tggtggtgaa aaacagcgtg ttgccattat
     1441 gcgtgcatgg atgaatcagc cgaaattgtt actcgctgat gaacctactg cgagtctaga
     1501 tgctaaacgt gcgacagaag tggttgaaat gattaagcaa caagtacgtc aagaaggtgc
     1561 aatcggtatc atggtaacac atgatcaacg cttgtttgat tatgcagatc gtatcattta
     1621 ccttaatgat ggtgaattga tggaaacagc gactgctatg acagtttgat agggaggtat
     1681 tgagcatatt tgagtaggag aaactgagat atcaattttg ctctgatact atcttttcat
     1741 aaattatagg aagggattgg gacattttag tttcccactc cctatttttt attgtgcata
     1801 ggttaatcat aaaggtaagt aagacaccat tcaaaaacac cacaaaacca tcatgactta
     1861 aaataatgcg cgctgtaatc gttttgtcgg tacctggatg tttcacagcg gtatccaatt
     1921 gtgacaccac ctcagtcaca atggcaagca caatacataa cgaaaagaag agcattatcg
     1981 ggtcaggtca acgagtgctt aacttttcga cttgatttaa aaataatgaa attacgggtt
     2041 gtttttcgct tttattcttc atcacatcac accctatctg aattatgcgc ttacttatct
     2101 gaaatttaag aaaatatatt taaaatgcaa ataccgactt gaacgatagt aaagagcgcc
     2161 caaactcgtg gatattgaaa aagtaagccg ctgtaatcac gtatcagttc acgactgacc
     2221 caatgatgtg gcgttggggc accataaccg aacgcatgta gttgttggcg ttcagcgagt
     2281 cgtaatgcac gtaaaatgtg aaatgaactc gtcactatga tggtatgtgg ttgttgatgt
     2341 aacgctaagt aatgtttgga atagtaaata ttttggcacg tattggtcga ctggtcttcc
     2401 atagtaattt gcttcggtgc tatcccttgt tgtattaaat accgttgcat cgcgagtgct
     2461 tcagatatcg gttcatctgg gccttgtcca ccactgacga taatgtgaaa cttttctaat
     2521 tggcgactca atgcgatggc gcgatctaac cttgctttta acatcggtgt tacagcttct
     2581 gtatagatgc ctgcaccgag aacgataatg ttggcacgtg tcacgggagg caggtggtgt
     2641 aaaaatgtaa aggtcatgaa caaataagtt tgccaagctg tgagaaagac gatggctaat
     2701 tgaactaaca attgaaaagg aatcgtcaaa acggctggta ttaaaggaat gactaataaa
     2761 cttccaataa tcagcgcgac aatcgctaag tgataagtga tgacacgacc gatgatgtgc
     2821 caatatgttt gaatgtgccg atatagcgtt agcgcaagta aaatcaaccc aatgactaaa
     2881 gtgatcatta accatatgag gcgatcggca tgcgtgatgt agctgatcgt gatgaaaagc
     2941 atatgaatgt atagaaccgc cgtaaaggaa tggatgcgta aaaaaagatg tggctttatc
     3001 tttatcaatg ttaagattat aatgtagctt attaatagca aaatttgaag taaattcatt
     3061 ttttaagtcc tttattttat catttacggt aatgatacta aattctttac aaaaaatgtc
     3121 aaaaaatgag gttcccttat aaaataattg ttggtacgat ggtaaagata gttgtttgta
     3181 atgaaggcgg tgaagaaaaa tgacccattc aaatttaatg aatcaacatg tgacgtttat
     3241 gggtgagttt atgacgaatg tgaatgcact cacagcagga ttattaaaag atttaagatc
     3301 tcgatacggc atttcaaatg aacaatcgag tgtgttatta atgctttcta atgacaagtc
     3361 actgacatta acagagatta cattacgtca aggtgtgaat aaagcggcag tcagtagaag
     3421 aataaaaaag ttagtagatt taggtttagt caaatgggta aatatggcat atgaatatga
     3481 taaacgattg aaatatgttg ctctgactga agcgggtatc gattatgtcc gcgcttcaag
     3541 aaatttaatt gcaaatttag caaacgaaat gttgtcagat atcccattag aaaaaattga
     3601 acaaacacga gacatgcttg aattgattga tgaacggata caaggtcaat tgaatcaact
     3661 gtagtgcatc atgtgcgcta ctactcacgt ctgatgcagt ttttatagtt aacctttatg
     3721 atagaaaaat atgacgaatg agctcaatga atagaatagg aggtgtacgt atgggtcaat
     3781 gcgcggtatg tcaccatgaa aagttaccac atcaaagcgt ctgtccaaat tgtcaaaatc
     3841 aaatattgta ttctaaaacc cctagtccac agtcacctaa acaacgagat gcagcacagt
     3901 catcatcttc caataacaat aaaagaccac cgtcattaaa aaaagtcatc cctattgcta
     3961 ttgtaagttt tattattatt ttactcatta ttttattttt gctgctcaga aactttaatt
     4021 ctcctgaagc tcaagcgaaa atcttgatta atgcggtgaa taacgaagac aatgcaaaag
     4081 tatccaacct tttaagttca aaagaaaata aagtaggccg acaagaagcg tcaacttaca
     4141 tcaaatttgt aaaacaagaa gtgggcatga aactgttcga aaaagaagta tacgacactg
     4201 tggacgggct taaccatgaa accgctgtag cctcttatat taaaacacgt gaaggtcaag
     4261 atgtgttgag aattagtaaa aatgggcggc gttatttaat ctttgataat ttaagtttct
     4321 tagcaccaac gaaacaggcg attgtgaagc cgaaagaaaa ggcgacgttt gagtttgatt
     4381 cagatggcgc gcaaaagaaa gtggtcgctg aagcaggaca atccgtatcg ctaggtcaat
     4441 tcataccagg aagttacgcg attgatactg taaaaacaac ggaccgcggt acatatgaag
     4501 gccaattgaa gtttgatttt gtgaatagta aaaatgaaac cattccagtg accgaagact
     4561 ttaaagaagc tcaagtaaaa ctgtcactta aaaatgtgag tgatttaaaa gagattaaag
     4621 tggtgattaa tgacgaaaaa atagctcaaa ataaaaacga tacttatggg ccgtttccag
     4681 tcaatcagga cattaaagtc tatgctgaag gtgaagctta cgatcataca tttaaaacaa
     4741 atacagaagt gattaaaaaa gatgatgtcc aatctgaaaa caaaatcact gtgtcgtttg
     4801 ataaagatga gattgaaaaa tatcgccaat ctaaagaaaa agatacattg aataagatca
     4861 aggacttttt caaaaagtat acggtgtcgt taaatgaagc atatgaaagc catgattttg
     4921 atttaatttc taaatattta aaggaaaata caacaaatta tgaagcgatg cgttcgaatg
     4981 tgaaaggtca aaatcagtat aaatttaaaa atcctgtagt catagatgtt tcgcgcaacg
     5041 ccgattacta cgcagtgaca gttgaaaaag aagacgcaca aggccgtaca attcaatccc
     5101 attatttatt agatggggat gaaaatgcca accacttaaa aattgtgaac tatcaaaatt
     5161 actaaagtat aaaagtgaat aacatcctaa tgaagttcta gtccgttgtt ggagtggaac
     5221 ttcatttttt gatgtatgga tatttcggat tgatgattta aaaatatatt gagtcagttg
     5281 gggttcatga aaggcgatac aagaaagttc gagaagcgtt agcaatttgc ataat
//
LOCUS       DANHOL010000145         5185 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.147, whole genome shotgun sequence.
ACCESSION   DANHOL010000145 DANHOL010000000
VERSION     DANHOL010000145.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 5185)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5185)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5185
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.147"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            56..484
                     /gene="lacA"
                     /locus_tag="PTC08_002018"
     CDS             56..484
                     /gene="lacA"
                     /locus_tag="PTC08_002018"
                     /EC_number="5.3.1.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose-6-phosphate isomerase subunit LacA"
                     /protein_id="HDK5683491.1"
                     /translation="MKVIIGADQYGLSLKEHIKTFLLQHQYEVLDVTSEELEDFVDVT
                     VAVAKEVQQNDENLGVVIDAYGVGSFMVATKIKGMIAAEVSDERSAYMTRSHNNSKMI
                     TMGAALVGQTLAENIVKGFIEGHYDGGRHQIRVDMLNKMG"
     gene            500..1015
                     /gene="lacB"
                     /locus_tag="PTC08_002019"
     CDS             500..1015
                     /gene="lacB"
                     /locus_tag="PTC08_002019"
                     /EC_number="5.3.1.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose-6-phosphate isomerase subunit LacB"
                     /protein_id="HDK5683492.1"
                     /translation="MKIAIGSDHIVTDTKMEVSQFLKSLGHEVLDCGTYDFARTHYPI
                     FGKKVGEAVTSGEADLGICICGTGVGINNAVNKVPGVRSALVRDMSSAIYAKEELNAN
                     VIGFGGKIIGELLLCDIVEAFINAEYHPTAENKRLIEKIAQVESENENQKEDSFFDEF
                     LEKWDNGEYHD"
     gene            1086..2054
                     /gene="lacD"
                     /locus_tag="PTC08_002020"
     CDS             1086..2054
                     /gene="lacD"
                     /locus_tag="PTC08_002020"
                     /EC_number="4.1.2.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tagatose-bisphosphate aldolase"
                     /protein_id="HDK5683493.1"
                     /translation="MSNKQELLARLSDENGIISALAFDQRGALKRMMAQFQASEPEVR
                     DIEQLKKLVSEELTPYASSILLDPEYGLPATQVRHSSTGLLLAYEKTGYDVNAKGRLP
                     DCLVDWSAKRIKEAGAQAVKFLLYYDVDDEAYINDQKEAYIERIGSECKAEEIPFFLE
                     ILAYDDSIKDNKSKEYAKVKPRKVIEAMRVFSNERFGVDVLKVEVPVDMNYVEGFSQG
                     EFVYTREEAAAYFKQQDEATHLPYIYLSAGVSAQLFQETLKFAHEAGAQFNGVLCGRA
                     TWSGAVKAYIENGEEAAREWLRTEGYHNINELNHVLKETAVSYKSK"
     gene            2080..2394
                     /locus_tag="PTC08_002021"
     CDS             2080..2394
                     /locus_tag="PTC08_002021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017174827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS lactose/cellobiose transporter subunit IIA"
                     /protein_id="HDK5683494.1"
                     /translation="MNREEVAMLGFEIVAYAGDARSKYLEALSAAQVGDYDKAEQLIE
                     EGNQCIVDAHKAQTSLLQKEAMGDDIAYSVTMMHGQDHLMTTILLKDMLKHIIELYKR
                     GS"
     gene            2400..4124
                     /locus_tag="PTC08_002022"
     CDS             2400..4124
                     /locus_tag="PTC08_002022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS lactose transporter subunit IIBC"
                     /protein_id="HDK5683495.1"
                     /translation="MNKLIGFIEKGKPFFEKLSRNIYLRAIRDGFISAMPIILFSSIF
                     LLIAYVPNIFDFKWSKETEALIMKPYHYSMGIVGLFVAGTTAKALTDSYNRKLERTNQ
                     INFISTMLASMSGFLFLASNTLEAGGFANAFMGTKGLLTAFLSAFITVMIYNICIKNN
                     ITIKMPKEVPPNISQVFKDLIPFSLVILTLYGLDILSRSVNKTNVAESILKVFEPLFT
                     AADGYVGITIIFGAFAFFWFVGIHGPSIVEPAIAAITYANIETNFKLLHAGEHADKIL
                     TPGTQMFIVTMGGTGATLVVPFIFMWLSKSKRNKAIGRASVVPTFFGVNEPILFGAPI
                     VLNPIFFIPFIMAPIINVWIFKFFVDVIGMNSFSVFLPWTTPGPLGIVMGTGFGVWSF
                     VLAMTLIIVDTFIYYPFFKVYDNQILDDELKGIDSTNELHAKVGENFNTSKADAILNA
                     STNQSVADMTQEANSSNPITKPINVLVLCAGGGTSGLLANALNQAATEYEAPVKAAAD
                     SYGAHMDIMKDFDLVILAPQVASNYQDIKQDTDRLGIKLAKTQGGEYISLTRDGQAAL
                     KFVQDHFR"
     gene            4142..>5185
                     /gene="lacG"
                     /locus_tag="PTC08_002023"
     CDS             4142..>5185
                     /gene="lacG"
                     /locus_tag="PTC08_002023"
                     /EC_number="3.2.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011275160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-beta-galactosidase"
                     /protein_id="HDK5683496.1"
                     /translation="MKKLPEDFIFGGATAAYQAEGATNIDGKGRVAWDTYLEKNYWYT
                     AEPASDFYHRYPVDLELSEKFGVNGIRISIAWSRIFPKGYGEVNPKGVDYYHRLFKEC
                     MKRNVEPFVTLHHFDTPEALHSNGDFLNRENIQHFVDYAEFCFNEFKEVNYWTTFNEI
                     GPIGDGQYLVGKFPPGIQYHFEKVFQSHHNMMVAHAKAVALFKEQGHQGEIGVVHALP
                     TKYPFNPDDPEDVRAAELEDIIHNKFILDATYLGHYSKETMDGVNHILSINGGALDLR
                     QEDFEILEVAKDLNDFLGINYYMSDWMRSFEGESEITHNSKGDKGGSKYQLKGIGQRE
                     FDVDVPRTDWDWMI"
BASE COUNT         1733 a          769 c         1117 g         1566 t
ORIGIN      
        1 atgaaagcgt ttgaaaattg atggatttag cttttatttc gaaaggatga ttattgtgaa
       61 agtgattatt ggtgcagatc aatatggttt aagtttaaaa gaacatataa aaactttttt
      121 acttcaacac caatatgagg ttttagatgt cacaagcgaa gaattagaag atttcgtaga
      181 tgttaccgtt gctgttgcta aagaagtaca acaaaatgat gaaaatttag gtgttgttat
      241 tgatgcatat ggcgttggaa gcttcatggt cgcaacaaaa attaaaggaa tgatagcagc
      301 agaggtgtca gacgaacgtt cggcctatat gacgagaagc cataataact cgaaaatgat
      361 tacaatgggt gcagcattgg tagggcaaac tttagctgaa aacattgtga aaggctttat
      421 cgaaggtcac tatgatggtg gacgtcacca aattcgtgta gacatgttaa ataaaatggg
      481 ataagaggag gagcatgaga tgaagattgc aattggttcg gatcatattg taacagatac
      541 gaaaatggaa gtatcacaat ttttaaaatc attgggtcac gaggtgcttg attgtggtac
      601 gtatgatttt gcacgaacac attatccaat ttttggaaaa aaagtgggag aagctgtcac
      661 aagtggagaa gcagatttag ggatatgtat ttgtggtaca ggagtgggaa tcaataacgc
      721 tgtcaataaa gtgccaggtg tgcgttctgc attggttcgt gatatgtcat cagctatcta
      781 tgctaaggaa gaactaaatg caaatgtcat aggctttggt ggcaaaatta ttggcgagtt
      841 attactttgt gatatagtcg aagcctttat taatgctgaa tatcacccta ccgcagaaaa
      901 taaaaggttg atagaaaaaa tagcgcaagt tgagtcggaa aatgaaaatc aaaaagaaga
      961 ttcctttttt gatgagtttt tagaaaagtg ggacaacgga gaatatcacg attaacttat
     1021 ctaaatcatt aaagtatatt tgcagatttg agtgtattga ttttattaaa tgtagaggtg
     1081 taaaaatgag taacaaacaa gaattattag cacgcttaag tgacgagaat ggaatcattt
     1141 cagcattggc ttttgaccaa cgtggcgcat taaaacgtat gatggcacaa tttcaagcat
     1201 ctgaacccga agttagagat atagaacaat taaaaaaatt agtttcagag gagctcacac
     1261 cttatgcgtc ttctatttta ttagatccgg aatatggttt gcctgcaaca caagtaagac
     1321 atagctcgac aggtttatta ttagcatatg aaaaaacggg atatgacgtg aatgctaaag
     1381 gacgtttacc tgactgctta gttgattggt cggccaaacg tattaaggaa gcaggcgcac
     1441 aagctgtcaa attcttgctc tattatgatg tcgatgatga agcatatatc aatgatcaaa
     1501 aagaggcata tatcgagaga attggttcag aatgtaaggc agaagagata ccgttctttt
     1561 tagaaattct agcatatgat gattcaataa aagataacaa aagtaaggaa tacgcaaagg
     1621 taaaaccaag aaaagttatt gaagcgatgc gcgtattttc aaatgaacgt tttggagtgg
     1681 atgttttaaa agtggaagta cctgtagata tgaactatgt cgaagggttc agtcaaggtg
     1741 aatttgtgta cacgcgtgaa gaagcagctg cgtatttcaa gcaacaagat gaagcaacac
     1801 acttaccgta tatttatttg agtgccggtg tttctgccca attattccaa gagacattaa
     1861 aatttgcaca cgaggctgga gcgcagttta atggtgtgtt atgtggacgt gcaacatggt
     1921 ctggtgcagt gaaagcatat atagaaaacg gtgaggaggc agcaagagaa tggctgcgca
     1981 ctgaaggtta tcacaatata aatgaactaa atcatgtgct aaaagaaaca gctgtttcat
     2041 acaaaagcaa ataattaaca aacggtggag gtaatgagga tgaacagaga agaagttgca
     2101 atgttaggat ttgaaattgt ggcatacgct ggagatgcac gctcaaaata tttagaagca
     2161 ttatcagcag cacaagttgg cgattatgat aaagctgaac aactgattga agaaggtaat
     2221 caatgtattg tggatgcgca caaagcacaa acgagtttat tacaaaaaga agcgatgggt
     2281 gatgatattg cttacagcgt aaccatgatg catggacaag atcacttaat gacaaccatt
     2341 ttattaaaag acatgttaaa acatatcatc gaattgtaca aacgagggag ctgacatcta
     2401 tgaacaaact gattgggttt attgaaaaag ggaaaccgtt ttttgaaaaa ctttctcgta
     2461 atatttattt aagagcgatt cgtgacggtt ttatctcagc tatgccaatt attttatttt
     2521 caagtatttt cttattgatt gcttatgtac cgaatatatt tgatttcaag tggagtaaag
     2581 agaccgaagc actcattatg aagccatacc attattcaat gggaattgta gggttatttg
     2641 ttgcgggaac aacagccaaa gcgctaacgg attcatacaa tcgtaaatta gaaagaacaa
     2701 atcaaatcaa ctttatctcg acgatgctgg cttcgatgag tggtttctta tttctagctt
     2761 cgaatacact tgaagcagga ggatttgcaa atgctttcat gggaacgaaa ggcttactaa
     2821 cagcattttt atctgccttt attactgtga tgatttataa catttgtatt aaaaataata
     2881 ttacaatcaa aatgcctaaa gaagtgcccc caaatatttc acaagtgttt aaagatttaa
     2941 ttccattcag ccttgttatt ttaactttgt atggattgga tatcctttca agatcagtga
     3001 ataaaacaaa tgtcgctgaa tctattttaa aggtttttga accattattt accgcagcag
     3061 atggctatgt gggtattaca attatatttg gtgcttttgc gtttttctgg tttgttggta
     3121 ttcacggtcc ttctatcgtg gagcctgcta ttgcagccat tacttatgcc aatatcgaaa
     3181 caaactttaa attactacac gctggtgaac atgcagataa aattttaaca ccaggtacac
     3241 aaatgtttat cgtaactatg gggggcactg gtgcgacatt agtagtcccg tttatattta
     3301 tgtggctgtc taaatcaaaa cgtaataaag caattgggcg tgcctcagtt gtacctacat
     3361 ttttcggtgt aaatgaacct attttatttg gtgcacccat cgtattaaat cctatattct
     3421 ttataccatt tatcatggca cccattatta atgtgtggat ttttaagttt tttgttgatg
     3481 tcattggtat gaatagtttt agtgtgttct taccttggac gactccaggt ccattaggaa
     3541 tcgtgatggg gacaggattt ggtgtgtggt catttgtttt agcaatgact ttaatcattg
     3601 ttgatacttt catttactat ccattcttca aagtctatga taatcaaatt ttagatgatg
     3661 agttgaaagg tattgacagt acgaacgaat tacatgcaaa agtgggagaa aactttaata
     3721 cgtcaaaagc agatgctatt ttaaatgcgt ctacaaatca atccgtcgct gatatgactc
     3781 aagaagcaaa cagttcaaac cctattacta aacctattaa tgtacttgta ctatgtgctg
     3841 gaggaggaac aagtggttta ctagccaacg ctttaaacca agctgctacg gagtacgaag
     3901 cacctgttaa agctgctgca gatagttatg gcgcacatat ggatattatg aaggatttcg
     3961 atctcgtcat tttagcccca caagttgctt caaactatca agatattaaa caagatacag
     4021 ataggctcgg aataaagctt gctaagacac aaggtgggga atacattagc cttactcgtg
     4081 atggccaagc agctttgaaa tttgtgcaag atcattttag ataaaaggag atcaaaatct
     4141 aatgaaaaag ttaccagaag actttatttt tggtggtgct acagcagcat atcaagctga
     4201 aggtgcgaca aatatagatg gtaaaggtag agtagcgtgg gatacttatt tagaaaaaaa
     4261 ttattggtac acagcagaac cagctagcga cttttatcat cgctatcctg ttgacttaga
     4321 gttaagtgaa aaatttggtg tgaatggaat acgaatatca atcgcatggt cacgtatttt
     4381 tcctaagggc tatggagagg ttaatcctaa aggtgtagat tattatcatc gtctttttaa
     4441 agaatgcatg aaaaggaacg ttgaaccttt cgtaacatta catcattttg atacaccaga
     4501 agctttacat tctaatggtg acttcttaaa cagagagaat attcaacatt ttgttgatta
     4561 tgctgaattt tgttttaacg agtttaaaga agtgaattat tggacaacat tcaatgaaat
     4621 cggacctatt ggggatggcc agtatcttgt agggaaattc ccacccggta ttcaatatca
     4681 ttttgaaaaa gtgtttcaat cacatcacaa tatgatggtt gcacatgcaa aagcagttgc
     4741 tttattcaag gaacaaggtc atcaaggtga aatcggtgtt gttcatgcct tgcctacaaa
     4801 atatcctttt aacccggacg atcctgaaga tgttcgcgcg gctgaattag aagatattat
     4861 ccataataag tttatattag acgcaacgta tttagggcat tactctaaag aaacgatgga
     4921 tggcgttaac cacattttga gtattaacgg tggggcactg gatttaagac aagaagattt
     4981 tgaaatacta gaagttgcca aagacttaaa tgatttctta ggaattaact attatatgag
     5041 tgattggatg cgtagttttg aaggtgaaag tgaaattacg cataattcta aaggtgacaa
     5101 aggcggttca aaataccaac tgaaagggat tgggcaacgt gaatttgatg tagatgtccc
     5161 tagaacagat tgggattgga tgatt
//
LOCUS       DANHOL010000146         5114 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.148, whole genome shotgun sequence.
ACCESSION   DANHOL010000146 DANHOL010000000
VERSION     DANHOL010000146.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 5114)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5114)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5114
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.148"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            <1..528
                     /locus_tag="PTC08_002024"
     CDS             <1..528
                     /locus_tag="PTC08_002024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016425816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDK5683497.1"
                     /translation="MNVESGWSSDILQKLENNELDIAIVTGDYQWYGEKILLKRDPIT
                     LISSQPIDFLNLYKAPRVSYKPRKNYKAYVEIENSITKLINDWWQTQYDEQAYIIVES
                     DQVEFCKKLVKEEVGYSILPNACIQKDEKFYQYHLKNKEGEYIYRKTWLFYRRSIQKN
                     SHVYHFIEFCKNYFD"
     gene            complement(525..1913)
                     /locus_tag="PTC08_002025"
     CDS             complement(525..1913)
                     /locus_tag="PTC08_002025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016425817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfcC family protein"
                     /protein_id="HDK5683498.1"
                     /translation="MKQKNGNKFPDAIVIIFTMSIIAALLTYILPSGEYKRKSVGKIK
                     EIIPDSFHATPKHPTGIMDFFTAIPHGLVESADIIFLVLIIGGAIAIIDSTGATYSGI
                     QTLVEKTKGNQYLLIITIALLFGIMHQVGVSGNTVIAFIPIGIMLAKALKLDAVVGVA
                     MVYLGNFAGGAVGTFDPAIMGVAQRIAGVPLFSGAWYRIIIFIALIIVTIIYICWYTR
                     KISLDPSKSILKDNPFPVINEDSIQNYEKFNKKHFLIIMIFIGSIGVFLYGVFHYKWS
                     VKELSAIFIIAAILVAFVERISPNDFIKIFMEGVRKLAYGAVIIGVARSIIVIFKDAH
                     VLDTITHAATAHIQDFPTTIGALAMFAFNWFFNILVSSGSGQASIVMPIMSPIGDMIG
                     LTRQTTVLAFKLGDGITNIITPFSGVLMSVLAIGGIPWTKWLRFAFPLVLWWTLVGTI
                     FLIIAVFINYGP"
     gene            complement(1935..3119)
                     /locus_tag="PTC08_002026"
     CDS             complement(1935..3119)
                     /locus_tag="PTC08_002026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016425818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M20 family metallopeptidase"
                     /protein_id="HDK5683499.1"
                     /translation="MTYQLKIYQVIHNIENELYHLNDFIHDHPELGNEEFKAVEQITA
                     ILEKYGFDIERNVADLPTAFIATFDHHMDSLKEPYTIGLICEYDALAQLGHGCGHQLQ
                     APSIIGAAIATIKACSDLSFIIKVIGTPAEETTSGKLPMQKAGVFKDLDLALMMHGSD
                     RTTVDTKSLAINKIDFEFTGVPSHAAVSPELGRSALDGVMMLFNGIEYLREHVTSDVR
                     MHGIITNGGQAVNIVPEFASAQFSFRAEKRSNLNQLLKRVKRVAEGAALATETEVRIK
                     TVKQLESKVNVQTLNDVLLKNAELAGAVRISPPREKTGSTDFSLVTHHVPGACLRTAF
                     VPLHTPNHTKAWVDAGKTDEAHTAIQVASKALSYTIADFLTNPTLRHQINREFKQAHQ
                     EL"
     repeat_region   3842..4744
                     /inference="COORDINATES: alignment:crt:1.2"
                     /inference="COORDINATES: alignment:pilercr:v1.02"
                     /rpt_family="CRISPR"
                     /rpt_type=direct
                     /rpt_unit_range=3842..3877
                     /rpt_unit_seq="aatcgaatagagaccccgacattaggggacgagaac"
BASE COUNT         1776 a          840 c          986 g         1512 t
ORIGIN      
        1 atgaatgttg agagtggctg gagttccgat atattacaaa agcttgaaaa taatgaatta
       61 gacattgcga ttgtgacagg tgattatcag tggtatggag aaaaaatact tttaaaacga
      121 gatcctatta cattgattag tagccagcct attgattttc taaatttgta taaagcacca
      181 agagttagct acaagccccg aaaaaattat aaagcttatg ttgaaattga gaattctatc
      241 acgaaattaa ttaacgattg gtggcagaca cagtatgatg aacaagcgta tattatcgtt
      301 gaatctgatc aagtggaatt ctgtaaaaag ttggttaaag aggaagtggg ttattccatt
      361 ctaccaaatg cgtgtattca aaaagatgaa aaattttatc aatatcattt aaaaaataag
      421 gaaggtgagt atatttatag aaaaacatgg ctattttata gaagatctat tcagaaaaat
      481 agccatgtat atcattttat agagttttgt aagaattatt ttgattaagg tccataatta
      541 atgaagacag cgatgattaa aaagatagtg cctacgagtg tccaccaaag tacaagaggg
      601 aacgcaaatc tcaaccactt tgtccaagga ataccaccta tggcaaggac agacatgagc
      661 acgccagaga aaggtgtaat aatattagta atcccgtctc caagtttaaa agcaagtaca
      721 gttgtttgtc gtgtgagtcc aatcatatca ccaataggac tcatgatagg cataacgata
      781 gatgcttgcc cactaccaga actgacaagt atattaaaga accagttgaa tgcaaacata
      841 gctaaagcac ctattgtagt tggaaaatct tgtatgtgtg cagtcgctgc atgtgtaatc
      901 gtatctaaga cgtgagcatc tttaaagata acaataattg agcgagcgac tccgataatg
      961 actgcaccgt atgctagttt tcttacgcct tccataaata ttttgataaa gtcattgggt
     1021 gaaatccgtt caacaaaagc gactaagatc gcagcaataa taaagatagc tgacaattct
     1081 ttaaccgacc atttgtaatg aaaaacgccg tataaaaaga caccgataga tccaatgaaa
     1141 atcatgataa taaggaaatg tttcttatta aatttttcat agttttgtat actgtcttca
     1201 ttaatcactg gaaacggatt atcctttaaa atacttttag aaggatccaa actaatttta
     1261 cgtgtgtacc aacaaatata tataatcgtt acaataataa gtgcaataaa aataatgatt
     1321 ctataccaag caccagaaaa aagagggacg ccagcgattc tttgagccac acccataatt
     1381 gcaggatcaa atgtacctac agcaccacct gcaaaattgc cgagatagac catggccaca
     1441 cctacaacag catcaagttt taatgctttt gcgagcataa tgccaatcgg aataaatgcg
     1501 atgactgtat ttcctgaaac acctacttga tgcataatgc caaagagtaa tgcaatggtg
     1561 atgataagga gatattgatt gcctttagtt ttttcaacta aagtttggat accgctataa
     1621 gtcgcccctg ttgaatcaat aattgcgata gcaccaccga taataagtac taaaaatata
     1681 atgtcggcac tttctactaa accgtgtgga atggcagtaa aaaagtccat aataccagtt
     1741 ggatgcttag gagtggcgtg aaaagagtca ggaatgattt ctttaatttt acctacagat
     1801 ttcctcttat attcaccaga tggaagaatg taagtcagca atgcagcgat gatggacata
     1861 gtaaaaataa tgacgatagc atcaggaaac ttattaccat tcttttgttt catttaaaac
     1921 acctcaactt tttgttacaa ctcttgatgg gcttgcttaa attcacggtt aatttgatgt
     1981 cttaatgtag gattcgttaa aaaatctgct atggtataac ttaaggcttt acttgcaact
     2041 tggatggcag tatgcgcttc atctgtcttt ccagcatcta cccatgcttt cgtatgattt
     2101 ggggtgtgaa gcgggacaaa ggcagtcctt aaacaagcac caggtacatg atgtgtgact
     2161 aaactgaaat ctgttgagcc agtcttttct cttggtggtg agattcgaac agcacccgct
     2221 agttcagcat tttttaataa aacatcattt aacgtttgaa cgttgacttt actttctaat
     2281 tgttttactg ttttgattct cacttcagtt tctgtagcaa gagcagctcc ctctgcaaca
     2341 cgtttaactc gttttaacaa ttgattcaga tttgaacgtt tttcagctct aaaagaaaac
     2401 tgggctgatg cgaactcagg cacgatattg acagcttgcc cgccattcgt aataatgcca
     2461 tgcatacgta catcacttgt gacatgctct cgtaaatatt caatcccgtt aaataacatc
     2521 atgacgccat ctaatgcact tcgaccaagt tcaggtgata ctgcggcgtg agagggtaca
     2581 ccggtaaatt cgaagtctat tttattaatc gctaaagatt ttgtatcaac tgtagtacgg
     2641 tcacttccat gcatcatgag tgctaaatct aagtctttga acacaccagc tttttgcatt
     2701 ggtaatttac cactcgttgt ttcttctgcc ggcgtgccaa tcactttaat aataaagctt
     2761 aaatctgaac aagctttaat agttgcaatt gcagcaccga taatagatgg agcctgaagt
     2821 tggtgcccac aaccatgacc taactgagcc aaagcgtcat attcacaaat taaaccaata
     2881 gtataaggtt cttttagcga gtccatatgg tgatcaaatg tagcaataaa tgcagttggt
     2941 aaatcagcga cgttacgttc tatgtcaaac ccatactttt caagaattgc ggtaatttgt
     3001 tcaacagctt tgaattcttc attgccgagc tcaggatgat cgtgtataaa gtcgttaagg
     3061 tgatagagtt cattttcaat attatgaatg acttggtaga tttttagttg ataagtcata
     3121 gtgactccct cctttttgaa agcgatttct tagaataaag ttatcactta aaggatatgg
     3181 agtgaaattc aattttttta agtcacgata aaaatttttt atagtagagt gctgggattg
     3241 aatcgatata taggtaggga gctcaactgg gtaaaaagaa aattaatgtt tcacgtgaaa
     3301 acttgggatg aagtaataga attttttaga gataaggtca tatgaatgaa gtcggatgtg
     3361 tcgcgtacag taaaaaagtg ggagtatggt agttttggca attgaatagg ctgcggaaat
     3421 atgttgactg caaaaataca ttgcacattc cgatgagctt tttgagtacg aaaaagttaa
     3481 gaataaacaa aaattgaatt gtgcacagct acagcatatt cgaccagaag ttaaaggtta
     3541 aagagaaggt gtcagtatac aaaggaaaag tggaaaatat acgataatta ccatgaacaa
     3601 gaattgattt aaatgaaaac gttcaaaaag tgtagaagag gataatcatg tggagaggat
     3661 atgaattggg aaaaatttat tgtataatat cgatgatgtg ttttgaaaat ttttagttgg
     3721 ttgaaactga aatgtctaaa aattggacaa ttaggatatt tttaatgtta aagttgtctt
     3781 aatttcagac gcggttaaat gatagatatt ctcgctatca agggatttct atagctgact
     3841 aaatcgaata gagaccccga cattagggga cgagaacagg gaatgacaca aacagaaaaa
     3901 aacttaaaaa aaaatcgaat agagaccccg acattagggg acgagaacct tgaacggaaa
     3961 ccaatatatt tacaatgcgc tttaaatcga atagagaccc cgacattagg ggacgagaac
     4021 cacttcaatt tctttacctt gtactgtgtg cgtttctaat cgaatagaga ccccgacatt
     4081 aggggacgag aactgttaaa tgagtaggta agttaacaac agcatctaat cgaatagaga
     4141 ccccgacatt aggggacgag aacttcttta ttattgatta tagattttaa tttatatgtt
     4201 aaaatcgaat agagaccccg acattagggg acgagaactt tttttagtgt ttttttcata
     4261 ataaacaact cctaatcgaa tagagacccc gacattaggg gacgagaact actagccatt
     4321 ccgactaggt cgtgaggaca taaaaatcga atagagaccc cgacattagg ggacgagaac
     4381 tcatagttta aatttaataa attttccata gttatcaaat cgaatagaga ccccgacatt
     4441 aggggacgag aactatctat tgtaatatta atcaatgttc cctcgtgaaa tcgaatagag
     4501 accccgacat taggggacga gaaccataat aaagtcatct aggtcataaa ctgtaatata
     4561 atcgaataga gaccccgaca ttaggggacg agaacagcaa aaacttattc atttatgaag
     4621 attaatttaa aaatcgaata gagaccccga cattagggga cgagaaccct caatacctgt
     4681 accaacttct tttccccaac caaatacaaa tcgaatagag cccctgatat taggggacga
     4741 aaactttcag cagcctgaga atattctttt tcactcaagt caatcgtatt gaaatacgga
     4801 tattaagggg gcttatacca tttatagtat ttataaagtg cttttaagga gaggttacga
     4861 tatctggagc gttgaaaaat gacataacaa catagaaaga tgaatgcaac gttttaaaaa
     4921 ttacaaataa ttcacaattc tattgttgga aataaagaaa tgttgtaaaa tttaattaac
     4981 atttcaagcg ataaaatggg gtcttataca tcttgatgaa tttttgtatt tattgcatat
     5041 tttttagtca tagccattta aagtgtatgt attagtggtt ttgattggaa ttttgaagaa
     5101 ataataagca gatt
//
LOCUS       DANHOL010000147         5083 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.149, whole genome shotgun sequence.
ACCESSION   DANHOL010000147 DANHOL010000000
VERSION     DANHOL010000147.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 5083)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5083)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5083
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.149"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            <1..317
                     /locus_tag="PTC08_002027"
     CDS             <1..317
                     /locus_tag="PTC08_002027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HDK5683500.1"
                     /translation="CDIPKSKLRYYEKKNILKNIKRDANNKRLYTNDDIEMIKFIKCL
                     SHLNMPLKEIEKYTSMLYQNKIDVKTILVAHLEFLNHQRNLISTHIDLIEQELKKETH
                     SK"
     gene            404..1828
                     /locus_tag="PTC08_002028"
     CDS             404..1828
                     /locus_tag="PTC08_002028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribodipyrimidine photo-lyase"
                     /protein_id="HDK5683501.1"
                     /translation="MHLGVILNRVFRINHNPLFDYVITHQDEMKQLYLILPIEDLSDA
                     ATVKREDYHHVVKGFVSTLIKHNIHPYIVDYKNLDTLANALSLSHVLMAKDIMSYHRA
                     SYDYPHMKKRFEKHHISVIGQRVNHYFQPSKTFNQQHQPYQIFTYFYKANRQHLAHTP
                     QKSTQLKQLAQYAAKGMNQSDLKFDKHTDEEACARQSWNHFLNHEITLYSQLANDITR
                     DNISGLSRYLAYGLLDIREVINHLLEGYDSDENSYESFIRELMFREFYYVLMTQYPDA
                     ATQSFSVKYRNMEWSERQSHFEAWKNGETGYPIIDAAMKKLLRTGYMHNRLRMIVSQF
                     LTKHLFMNWTWGEAHFRRYLIDYDNASNVHGWQWSASTGTDAVPYFRMFNPIRQSERF
                     DAMGDFIKEQLQILKDVKPKYIHNPSQYVTAIQQNHQIKIGEDYPKAIVNHKESRDYV
                     MQQFKQYTNYKNGNHHENDINIDF"
     gene            complement(2167..>5083)
                     /locus_tag="PTC08_002029"
     CDS             complement(2167..>5083)
                     /locus_tag="PTC08_002029"
                     /inference="COORDINATES: protein motif:HMM:TIGR01167.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="fibrinogen-binding adhesin SdrG C-terminal
                     domain-containing protein"
                     /protein_id="HDK5683502.1"
                     /translation="ELLIVYKNEKEKHSIRKLSIGAASVIVGGLMYGVLGNDEAQANE
                     DVTETTGRNSVTTQASEQHLQVEAVPQEGNNVNVSAVKVPTNTATQAQEDVASVSDVK
                     AHADDALQAQESSHTDGVSSEFKQETAYANPQTAETVKPNSEAAHQSEDEDKQKPVSF
                     SRKEDETMLQQQQVEAKNVVSAEEVSQEENTQVMQSPQDVEQHVGGKDISNEVVVDRS
                     DIKGFNSETTIRPHQGQGGRLNYQLKFPSNVKSGDQFTIKLSDNINTHGVSVERTAPR
                     IMAKNTEGATDVIAEGLVLEDGKTIVYTFKDYVNGKQNLTAELSVSYFVSPEKVLTTG
                     TQTFTTMIGNHSTQSNIYVYYDNSHYVDGRISQVNKKEAKFQQIAYINPNGYLNGRGT
                     IAVNGEVVSGTTKDLMQPTVRVYQYKGQGVPPESITIDPNMWEEISINDTMVRKYDGG
                     YSLNLDTSKNQKYAIYYEGAYDAQAETLLYRTYIQSLNSYYPFSYQKMNGVKFYENSA
                     SGSGELKPKPPEQPKPEPEIQADVVDIIEDSHVIDIGWNTAVGEESGANQGAQEEITE
                     NHDIEVIEENNLVEMTEDTALEEESGANQGPQEEITENHDIEVIEENNLVEMTEDTAL
                     GEESGANQGPQEEITENHDIEVIEENNLVEMTEDTAVGEESGANQGAQEEITENHDIE
                     VIEENNLVEMTEDTALEEESGANQGAQEEITENHDIEVIEENNLVEMTEDTAVGEESG
                     ANQGAQEEITENHDIEVIEENNLVEMTEDTALEEESGANQGPQEEITENHDIEVIEEN
                     NLVEMTEDTAVGEESGANQGPQEEITENHDIEVIEENNLVEMTEDTAVGEESGANQGP
                     QEEITENQPQQEEIMENQEVEKKGDSNLVESTKTPKGEESVSVQPTLEDKNTKNHVNT
                     VVVNTKVSEVKEKNPHHTKALPDTGTTSRSHSMMIPLLLVAGSVVLLRRKKKHSKVN"
BASE COUNT         1403 a         1061 c          823 g         1796 t
ORIGIN      
        1 attgcgatat accgaaaagt aaactgcgct attatgaaaa gaaaaatata ttaaaaaata
       61 ttaaaagaga cgccaacaat aagcgcctct atacaaacga tgatattgaa atgattaaat
      121 tcatcaaatg tttgagtcat ctcaatatgc ctttaaaaga aattgaaaaa tatacctcca
      181 tgctgtatca aaataaaata gatgtcaaaa ccattttagt ggcacattta gagtttttaa
      241 atcaccaacg caaccttatc agcacgcaca ttgacttaat cgagcaagaa ttgaaaaaag
      301 agactcattc aaaatagcat ctatatctct aaaaacctta aaagacataa aaattcacat
      361 taacattagt gcttctagtt aaaaagcaca aggaggtcat catatgcact taggtgtcat
      421 actaaacagg gtttttagaa tcaatcataa ccctcttttt gattatgtca ttacacatca
      481 agacgaaatg aagcaactat atttgatatt acctatagaa gatttgagtg atgcggccac
      541 agtaaaacgc gaggattatc atcatgtcgt aaaagggttt gtaagtaccc tcattaaaca
      601 caatatacac ccttatattg ttgattataa aaatttggat acattagcga atgcgttatc
      661 actctctcac gtattgatgg ccaaagacat tatgagttat cacagagcaa gttatgacta
      721 tcctcatatg aaaaaacggt ttgaaaagca tcacatttcg gtcattggtc aacgtgtcaa
      781 tcactacttt cagccatcaa agacttttaa ccagcaacac caaccttatc aaatatttac
      841 atacttttat aaagccaatc gccaacatct agctcataca cctcaaaaaa gcacgcaact
      901 gaagcaatta gcacaatatg ctgccaaagg aatgaaccaa agtgatttaa aatttgacaa
      961 acacacagat gaagaagcct gtgcacgtca atcctggaat cattttttga atcatgagat
     1021 taccctttat tctcaattag caaatgatat cacccgagat aatatcagtg gtttaagcag
     1081 gtatttagct tatggtttac tcgatattcg agaagtcatc aatcatttac ttgaaggata
     1141 tgacagtgat gaaaatagtt atgagtcttt catcagagaa ctcatgtttc gtgaatttta
     1201 ttatgtatta atgacacaat atccagatgc cgcgacacaa tctttttctg tcaagtatcg
     1261 gaatatggaa tggtctgagc gtcagtctca ttttgaagct tggaaaaatg gagaaaccgg
     1321 ttatcctatt atcgatgcag caatgaaaaa actccttcgt acagggtata tgcataatcg
     1381 cttacgtatg atagtgtctc aatttttaac aaaacatcta tttatgaact ggacttgggg
     1441 agaagcacat tttagacgct atttgataga ctacgataat gcttcgaatg tacatggttg
     1501 gcaatggtct gcatctaccg gaacagatgc cgtcccttat ttcagaatgt tcaatcctat
     1561 acgtcaaagt gaacgttttg atgcaatggg tgattttatt aaagaacagt tacaaatatt
     1621 gaaagacgta aagcctaagt atattcacaa tccctctcaa tatgtaacag caatacaaca
     1681 aaatcatcaa ataaaaattg gggaagatta tccaaaagcc atcgtaaacc ataaagagag
     1741 tagagattat gtgatgcaac aattcaagca atatacaaac tataagaacg ggaatcatca
     1801 tgaaaatgac attaacattg atttttgaca tcgcaatgat catcgcaagt gtcttgtttt
     1861 gttttaaagg attgagtatc gtatctactg agcactgatt cctgcctcgg tcactttttg
     1921 tagcttgatt tccttatata tggagttcaa aaaatggaaa tcacgtaatg atgagctacc
     1981 aatctgacag ttaattgccc tgtatgtact gttaaatacc agagtaaaaa aaacatttca
     2041 aatcaattta cagattatgg gtttgactta agcatatttc aaataaaaaa tgtagggaaa
     2101 tggcaaatat attgaccact ttcctacatt tctgttttca ccatattacg attttaaaat
     2161 tattctttaa ttcaccttac tatgcttttt ctttcgacgt aacaacacta ctgacccagc
     2221 aacaagaagg agaggaatca tcatggaatg acttcgagag gttgtccccg tatctggtag
     2281 cgcttttgta tggtggggat tcttttcttt aacttcagat accttcgtat tcactactac
     2341 tgtgttaacg tggttctttg tgtttttgtc ttctaaagtt ggctgaacgc taactgattc
     2401 ttcgcccttt ggagtttttg tactttctac caagttacta tcgcctttct tttcgacttc
     2461 ttggttttcc atgatttctt cttgctgagg ttgattctct gtgatttctt cttgagggcc
     2521 ttggtttgct ccactctctt ctccaactgc tgtatcttct gtcatttcca ccaagttgtt
     2581 ttcttcaatg acttcgatgt cgtggttttc tgtgatttct tcttgagggc cttggtttgc
     2641 tccactctct tctccaactg ctgtatcttc tgtcatttcc accaaattgt tttcttcaat
     2701 gacttcgatg tcgtggtttt ctgtgatttc ttcttgagga ccttggtttg ctccactttc
     2761 ttcttccaac gctgtatctt ctgtcatttc caccaagttg ttttcttcaa tgacttcgat
     2821 atcgtggttt tctgtgatct cttcttgagc accttgattt gctccacttt cttctccaac
     2881 tgctgtatct tctgtcattt ccactaagtt gttttcctca atgacttcga tgtcgtgatt
     2941 ttctgtgatc tcttcttgag caccttgatt tgctccactt tcttcttcca acgctgtatc
     3001 ttctgtcatt tccaccaagt tgttttcttc aatgacttcg atgtcgtgat tttccgtgat
     3061 ttcttcttga gcaccttgat ttgctccact ttcttctcca actgctgtat cttctgtcat
     3121 ttccactaag ttgttttctt caatgacttc gatgtcgtga ttttccgtga tttcttcttg
     3181 agggccttga tttgctccac tttcttctcc caacgcggta tcttctgtca tttccaccaa
     3241 gttgttttct tcaatgactt cgatatcgtg gttttctgtg atctcttctt gaggaccttg
     3301 atttgctcca ctttcttctt ccaacgctgt atcttctgtc atttccacta agttgttttc
     3361 ttcaatgact tcgatgtcgt gattttctgt gatttcttct tgagcacctt gatttgctcc
     3421 actttcttct ccaactgctg tattccatcc tatatcaatc acatggctat cttcaataat
     3481 atctactaca tcagcttgaa tttcaggttc tggttttggt tgttcaggtg gtttcggttt
     3541 caactcaccg cttccactcg cactgttttc gtaaaacttc acaccgttca ttttttggta
     3601 actgaacgga tagtaactgt ttaatgactg tatatatgtt ctatacaaca gcgtttcagc
     3661 ttgcgcatca tatgcccctt cataatagat ggcatatttt tgattcttgc tagtatccag
     3721 attcaagcta taaccaccat catattttct taccatagta tcgtttatgc tgatttcttc
     3781 ccacatatta gggtctatag taatactttc aggaggaaca ccttgtcctt tatattgata
     3841 tacacgcact gtaggttgca ttaagtcttt cgtcgtacca ctgaccactt caccattaac
     3901 tgcaattgtc cccctgccat ttaaatagcc attagggtta atgtatgcta tttgttgaaa
     3961 tttagcttct tttttgttca cttgcgaaat acgtccatct acataatgac tattatcata
     4021 ataaacgtaa atattggatt gcgttgaatg attaccgatc atcgtcgtga aagtttgtgt
     4081 cccagtagtc aagacttttt ccggacttac gaaatagctc actgataact cagcagtcaa
     4141 attttgcttg ccatttacat agtctttaaa tgtatatacg attgttttac catcttccaa
     4201 cactagacct tcagcaatta catccgtcgc accttcagta tttttagcca tgattctcgg
     4261 tgcggttctt tcaacagaaa caccatgcgt attgatattg tcagataatt ttatagtaaa
     4321 ctgatcgcct gattttacat tactaggaaa ctttaattga taattcaacc tgccaccttg
     4381 tccctgatga ggtcgaatag tagtttcgct gttaaatcct ttgatgtcac tcctatccac
     4441 tacaacctca ttagagatat ctttaccacc tacatgttgt tcaacgtctt gaggggattg
     4501 catcacttga gtattttctt cttgagacac ttcctccgca ctcacaacat ttttggcttc
     4561 aacttgttgt tgctgaagca tagtctcatc ttctttgcgg ctaaatgata cgggtttttg
     4621 cttatcctcg tcttcagact gatgtgctgc ttcactatta ggtttaactg tctcagctgt
     4681 ttgaggattc gcataagctg tctcctgctt gaattctgaa gaaacaccat cagtatgact
     4741 actttcttgt gcttgtaatg catcatcagc atgtgcttta acatcggata cacttgcaac
     4801 atcttcttgt gcttgcgttg ccgtattcgt aggtactttt acagcggata catttacatt
     4861 attgccttct tgaggtactg cttccacttg caaatgttgc tcagaagctt gcgttgtcac
     4921 tgaatttctc ccagttgttt cagtgacatc ttcattcgct tgagcttcat catttcccaa
     4981 aacaccatac atgagtcccc caacaatgac agatgcggct cctatagata actttcttat
     5041 tgaatgcttt tctttttcat ttttgtacac aattaataac tcc
//
LOCUS       DANHOL010000148         5043 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.150, whole genome shotgun sequence.
ACCESSION   DANHOL010000148 DANHOL010000000
VERSION     DANHOL010000148.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 5043)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5043)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5043
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.150"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            <1..946
                     /locus_tag="PTC08_002030"
     CDS             <1..946
                     /locus_tag="PTC08_002030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683503.1"
                     /translation="IAFIFIIPFLVHIGYITYKDELNPLHRKEHYLWIIFSYGLCYIL
                     TQIALYARIEAKDVASIDVLSINTFFVVLWLIGQMAVWNFLFLRRALPVSEEEITGEA
                     NAYSRSKKYQFTNTSKNHFKDFQDRTAEFTHGISRRTRRSIDLEKLRQKRETLGKKWF
                     SWAKLEEDDIPTFLKIRPKWLNRNYVMIACGVILLFFILLEFNNRNALFMSGDWQLSQ
                     TQYVYEWVSLLLLLIVAIVFIFTTVVRMLRGKYYYLQLFMISILFFKLLTEYIVILFH
                     GLLLSIFITPILVLMLVPAIVAFVLQLRQPVDTQVKKH"
     gene            1082..2251
                     /locus_tag="PTC08_002031"
     CDS             1082..2251
                     /locus_tag="PTC08_002031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002495586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent rRNA methyltransferase"
                     /protein_id="HDK5683504.1"
                     /translation="MKTAILNKGKEEKYFNQYPLVEEEDLFQHDQLEEGDVFHLLTST
                     NVYIATCYVGHQHKGLGWILTYQEDEVIDQAFFEQLFEQALEVRQYYYQIEGTNAFRL
                     FNGEGDGVGGLTIDNYDGHLLIQWYSEGIYHFRPQIVSAIKKIYNYTSIYEKTRFKHQ
                     SIEGGFVTGTAPEFPIVVEENFTFYNVHLDDGPMTGIFLDQKEVRKKIRDYYAKGRQL
                     LNLFSYTGAFSVIAATADSQTTSVDLANRSRQLTEENFGLNGIDPKSQHIYVMDTFDY
                     YKYALRHGLTYDTIVIDPPSFARNKKKTFSVTKDYDKLIEGALSILNPGGSLVLSTNH
                     SAYSLKVFKNMVKQTIENQGFTYEMNEVMGLPKDFKTHPHYKPSKYLKVIFITIK"
     gene            2312..2842
                     /locus_tag="PTC08_002032"
     CDS             2312..2842
                     /locus_tag="PTC08_002032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF697 domain-containing protein"
                     /protein_id="HDK5683505.1"
                     /translation="MNFKQKISETLGNKVLDIETINRKDALPASVQEIRARRERAEVL
                     VRKKALLSSGATVVPIPGFDFGMDMKLMRDVIEDVNKIYGLDHQQVNQMSDDMKNRIL
                     MAAGIQGSQLIGKKVSSGLLKVFIRDVAKRTAAKQTRWFPIVGQAVSASISYYFMVKV
                     GKDHIQKCENVVKSLL"
     gene            3006..3272
                     /locus_tag="PTC08_002033"
     CDS             3006..3272
                     /locus_tag="PTC08_002033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphocarrier protein HPr"
                     /protein_id="HDK5683506.1"
                     /translation="MEQQSYVIIDETGIHARPATMLVQTASKFDSDIQLEYNGKKVNL
                     KSIMGVMSLGVGKDAEITIYADGSDEKSAIDAITEVLSKEGLTK"
     gene            3272..4993
                     /gene="ptsP"
                     /locus_tag="PTC08_002034"
     CDS             3272..4993
                     /gene="ptsP"
                     /locus_tag="PTC08_002034"
                     /EC_number="2.7.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate--protein phosphotransferase"
                     /protein_id="HDK5683507.1"
                     /translation="MSNIIKGIAASDGVAIAKAYLLVEPDLSFSNEKTDQPEAEVQKF
                     NEALNNSKIELTKIRNHAEEQLGADKAAIFDAHLLVLDDPELIQPIEEKIKNESASAP
                     QALTEVTQNFITIFESMDNEYMKERAADIRDVAKRVLAHILGVELPNPSIIDESVIIV
                     AHDLTPSDTAQLNKQYVQGFVTNIGGRTSHSAIMSRSLEIPAVVGTKSISESVQQGDM
                     VIVDGLTGDVIVNPSDDEIKAYQHKRESFFADREALKQLRDEPSKTLDGHEVELAANI
                     GTPNDLEGVHNNGAEGIGLYRTEFLYMGRDNMPTEDEQFEAYKKVLESMEGKRVVVRT
                     LDIGGDKELPYLNLPEEMNPFLGYRAIRLCLDQPEIFRPQLRALLRASAYGKLNIMFP
                     MVATIQEFRDAKALLLEEKENLKQEGVEVSDDIELGIMVEIPATAALADVFAKEVDFF
                     SIGTNDLIQYTMAADRMSERVSYLYQPYNPSILRLIKQVIDASHQEGKWTGMCGEMAG
                     DETAIPLLIGLGLDEFSMSATSILKARRQIKDLSRTEMVQLADRALNCATVDEVVDLV
                     KAKTTKA"
BASE COUNT         1696 a          818 c         1060 g         1469 t
ORIGIN      
        1 gattgcgttt atttttatta ttccatttct tgtacatatt ggttatatca catacaaaga
       61 cgaactaaat ccattgcacc gtaaagaaca ttatttatgg attatattca gttatgggct
      121 ttgttacatc cttacacaaa tagcgctcta tgcccgtatt gaagcgaaag atgttgcatc
      181 gattgacgtt ctgagtatta atacattttt cgtagtttta tggttgatag gacaaatggc
      241 agtatggaat tttctctttt tacgtcgtgc attaccagtg tctgaagaag aaatcactgg
      301 tgaagcgaat gcgtattcaa gaagtaaaaa gtatcaattt acgaatactt ctaaaaacca
      361 tttcaaagac tttcaagatc gtacggctga attcacacat ggtatttcac gtcgcacacg
      421 ccgtagtatt gatttagaga agttacgtca aaagcgagaa acactaggaa aaaaatggtt
      481 ttcatgggct aaactagaag aagatgacat tccgacgttt cttaaaataa gacctaaatg
      541 gttgaaccgc aattatgtca tgattgcttg tggcgtgatt ctgttattct ttatattact
      601 agagttcaat aaccgtaatg cgctatttat gtcaggggac tggcagttat ctcaaacgca
      661 atacgtttat gaatgggtga gcttgctgtt attactcatc gtggcgattg tttttatttt
      721 tacaactgta gtgagaatgt taagaggtaa gtattattat ttacaacttt tcatgatcag
      781 tattttattc ttcaaattgt taacggaata cattgtcatt ttgttccacg gactattatt
      841 atctattttc attacaccga ttcttgtatt aatgttagta ccagcaattg tcgcgttcgt
      901 cttacaattg agacaacccg tggatacaca agttaaaaaa cattaataat gcttgacttg
      961 atgagggcta gggagaccat ttcctagtcc tttttataat ggcgtgtttg ggtgaaagat
     1021 atcattgtga aatcatccgt gttaaaatca gaataatgat aagaaaagaa aggctgataa
     1081 aatgaagaca gctattttaa ataaaggtaa ggaagaaaaa tatttcaatc agtacccact
     1141 tgtggaggaa gaggatttat ttcagcatga tcaattagaa gaaggggatg tctttcatct
     1201 cttgacttca acaaacgtct atatcgcgac ttgttatgta gggcatcagc ataaaggatt
     1261 aggttggata ttaacgtatc aagaagatga agtgattgat caagcatttt ttgagcaact
     1321 gttcgaacaa gcgctcgaag tccgtcagta ttactatcaa attgaaggca ccaatgcatt
     1381 tcgtctattt aatggtgaag gcgatggcgt gggtggtctc acgattgaca actatgatgg
     1441 ccacttatta attcaatggt actcagaagg gatttatcat tttcgtccac aaattgtgag
     1501 cgcgattaaa aagatttata attatacgtc tatatatgaa aaaacgcgtt ttaaacatca
     1561 atctattgaa ggcggttttg taacggggac agcaccggag tttccgattg tcgttgaaga
     1621 aaatttcacg ttttacaatg tacatcttga tgacggtccg atgacgggga tattcttaga
     1681 ccaaaaagaa gtgcgtaaaa agattagaga ctattatgct aaaggacgcc aattactcaa
     1741 tttattcagt tatacagggg cattttcggt tatcgctgca acagctgaca gtcaaacaac
     1801 gagcgtggac ttggctaatc gctcacgtca gttgactgaa gagaactttg gtttgaatgg
     1861 tattgatcct aaatcacaac atatttacgt gatggatacg ttcgattact acaaatacgc
     1921 actacgccat ggtttgactt acgatacgat tgtcatcgat ccaccgagtt ttgcgcgcaa
     1981 taaaaagaaa acattttctg tgacaaaaga ctatgacaag ttaattgaag gggcacttag
     2041 tattttgaac ccaggtggca gtctcgtatt gagcacgaat catagtgctt attcgctaaa
     2101 ggtatttaaa aatatggtca aacaaacgat tgaaaatcaa gggttcacgt atgaaatgaa
     2161 tgaagtcatg ggcttgccaa aagattttaa aacacatcca cactataaac cgtcgaagta
     2221 tctgaaagtt atttttatta caatcaagta gtaaaaattg ttaaaagggg tatagatgtg
     2281 aagaattttc ataatgaggt gagtatggaa gatgaatttt aaacaaaaaa tttctgaaac
     2341 attaggtaat aaagtactag atattgaaac gattaatcga aaagacgcgc taccggcatc
     2401 agtacaagag atacgtgcaa gacgcgaacg tgcagaagtg cttgtgagaa aaaaagcgtt
     2461 gttatcttca ggtgcaaccg ttgtgcccat accgggattt gattttggga tggacatgaa
     2521 attgatgcgc gatgtcattg aagatgtgaa taaaatttat ggcttagatc atcaacaagt
     2581 gaaccaaatg agtgatgaca tgaaaaatcg tatcttaatg gcagcgggta ttcaaggcag
     2641 tcaattaatt ggtaaaaaag tgtcgagcgg tttgttgaaa gtttttatac gtgatgtagc
     2701 taagcgaact gctgcgaaac aaacacgctg gttcccaatt gtcggacaag ctgtgtcagc
     2761 atctattagt tattatttta tggttaaagt cggcaaagac catattcaaa aatgcgaaaa
     2821 tgtagtaaaa tcattattgt agcttgtaaa aaaaatcaca aagcattatg aatgccgtta
     2881 aaaaagagat ggcggggcat ttacgaattg aatttaacaa tagaatttgg taatgtaatg
     2941 ctatgtagcg aagttaaata taatttatgc tagtaaatct agaagtagaa ggagtaagat
     3001 gacagatgga acaacaatca tatgtaatta ttgacgaaac aggtattcac gcacgtcctg
     3061 caacaatgct tgttcaaaca gcttcaaaat tcgattcaga tattcaatta gagtataacg
     3121 gtaaaaaagt taacttaaag tctatcatgg gtgttatgag cttaggtgtg ggtaaagacg
     3181 cagaaattac aatttatgct gatggtagcg atgaaaaaag cgcaatcgac gcaatcactg
     3241 aagtattatc taaagaagga ttaacaaaat aatgtcaaat attattaagg gaattgcagc
     3301 ttctgatggt gttgctattg ccaaggcgta tctgctcgta gaacccgatt taagttttag
     3361 taacgaaaag acggaccaac cggaagcgga agtccaaaaa tttaatgagg cgctgaataa
     3421 ctctaaaatt gaattaacga aaattcgtaa tcatgcagag gaacaattag gtgcggataa
     3481 agcggctatc tttgacgcac atttactcgt tttagatgat cctgagttaa ttcaaccaat
     3541 tgaagagaaa attaaaaatg aaagcgcaag tgcaccacaa gcattaactg aagtgacaca
     3601 aaacttcatt actattttcg aatcaatgga taacgaatat atgaaggaac gtgctgcgga
     3661 tatccgcgac gtagctaaac gtgttttagc gcacatttta ggggtggaat taccaaatcc
     3721 gagtatcatt gatgaaagcg tcatcattgt ggctcacgac ttgacgccat cagatactgc
     3781 acagttaaac aaacaatatg ttcaaggatt cgttaccaac attggtggtc gtacttcaca
     3841 ttcagcaatt atgagccgtt cattagagat tcctgctgtt gtaggtacaa aatcaatttc
     3901 tgaatctgta caacaagggg acatggttat cgtcgacggt ttaacagggg atgtgattgt
     3961 taatccttca gacgatgaaa tcaaagcgta tcaacacaag cgtgaatcgt tctttgcaga
     4021 tcgtgaagcg ttgaaacaat tacgtgatga accatcaaaa acattggatg gacacgaagt
     4081 agaacttgca gcgaacattg gtacaccgaa tgatttagaa ggtgtgcaca acaatggcgc
     4141 agaaggtatc ggtttatacc gtactgagtt cctttacatg ggtcgcgaca acatgccgac
     4201 tgaagatgag caatttgaag catacaaaaa agtgctcgaa tcaatggaag gtaaacgcgt
     4261 tgtcgtacgt acattagata tcggtggcga caaagagcta ccatatttaa acttacctga
     4321 agaaatgaat ccattcttag gataccgtgc gattcgttta tgtttagatc aaccagaaat
     4381 tttccgtcca caattacgtg cactattaag agcttcagca tacggaaaat tgaatattat
     4441 gttcccaatg gtggcaacaa ttcaagagtt ccgtgatgcg aaagcgttac ttcttgaaga
     4501 aaaggaaaac ttgaaacaag aaggcgtaga agtgagcgac gatatcgaat taggtatcat
     4561 ggttgaaatc ccagcaacag ccgcacttgc agatgtattt gcgaaagaag tggatttctt
     4621 cagtatcggt acaaacgatt taattcaata tacaatggct gcagaccgta tgtcagaacg
     4681 tgtttcttat ctttaccaac catataaccc ttcaatctta cgtttaatta aacaagtgat
     4741 tgacgcttct catcaagagg gcaaatggac aggtatgtgt ggtgaaatgg ctggcgatga
     4801 aacagcaatt ccattattaa ttggtttagg attagatgag ttctcaatga gtgcaacttc
     4861 tatcttaaaa gcgcgtcgtc aaattaaaga tttaagccga actgaaatgg tgcaattagc
     4921 agaccgtgca ttaaattgcg caactgttga tgaagttgtt gacctagtaa aagcgaaaac
     4981 aacaaaagct taattgaatc aaataaaaag agattgagtc attgcggctc agtctctttc
     5041 cta
//
LOCUS       DANHOL010000149         4999 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.151, whole genome shotgun sequence.
ACCESSION   DANHOL010000149 DANHOL010000000
VERSION     DANHOL010000149.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 4999)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4999)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4999
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.151"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            44..961
                     /locus_tag="PTC08_002035"
     CDS             44..961
                     /locus_tag="PTC08_002035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683508.1"
                     /translation="MLKLAEWKDEKETLHRLAQILGKHKLASAFQEPQWGHVILDITT
                     TGFSTGLLFYQSSTYSVSVNLVKHLILIETNNGEETIPLKDGVTIQSYYEQIQDALHR
                     HGIEVTINERPQEVADTTLFSQDTKRHHYNEAISKEVLKLMSFATRALQYFIAPYRAR
                     KIKPGLFWGTFDISCLVHYNSFHEMFEPNQVIEYAAFDEHFIEFGFWFGDDRFEGPTF
                     FILPYPFVDKSFTFDQPLISEAYFDKQLTELIYEMNAMTPETLETLSTFFNQGFEIFK
                     SHLSWENCHHYHVPLKMNENQIQKMPYAH"
     gene            complement(1039..1314)
                     /locus_tag="PTC08_002036"
     CDS             complement(1039..1314)
                     /locus_tag="PTC08_002036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HDK5683509.1"
                     /translation="MAEVKKGHNKYYVGDSESNPEAIMTYVPGGTQIIIDHTVVGDSL
                     RGQGVGKQLVEAAVKDARENNFKIHATCPFAKSVLERTPEYHDVYGG"
     gene            1481..1906
                     /locus_tag="PTC08_002037"
     CDS             1481..1906
                     /locus_tag="PTC08_002037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HDK5683510.1"
                     /translation="MQRTETALKTLIGIKRTNDMIDKTIRNDVKSYGLSVTAFAVLEL
                     LYNKGEQSIQRIQERILIASSSTTYVVNSLEQKGYLKRRQCHKDKRVSYVALTDKGQQ
                     LMEKIFPEHAQAIETVFSVLTDEELNTLQQVLKTLSTQP"
     gene            1989..2951
                     /locus_tag="PTC08_002038"
     CDS             1989..2951
                     /locus_tag="PTC08_002038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ring-cleaving dioxygenase"
                     /protein_id="HDK5683511.1"
                     /translation="MKQYPLKGIHHVTAMTDDAERNYHFFTDVLGMRLVKKTVNQDDI
                     YTYHTFFADDEGHAGTDMTFFDFPNNPKGAPGTNSISRTGFRVPNDAALEYYKARFDE
                     FGVKHDDIDTVFGTKVLRFEEEDGQRYQLFSDENNTGVEPGVAWKNGPVPQDKAIYGL
                     GPIEITVSYYDEFKQALMDLYGMKPIKEEENVTLLEVGKGGNGGQVILRKDETTESRP
                     GYGQVHHVSFRVENDEAIEEWFERYNELGVRSSGIVDRFYFKALYTRVGHILIELSTD
                     GPGFMGDEPYETLGETLSLPPFLEDQREYIESEVRPFDTTRSTK"
     gene            2997..3614
                     /locus_tag="PTC08_002039"
     CDS             2997..3614
                     /locus_tag="PTC08_002039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavin reductase family protein"
                     /protein_id="HDK5683512.1"
                     /translation="MYAFYASELSKQQMYKFLIGSVVPRPIALITSQSEEGLLNIAPF
                     SFFNIVSSEPALLSVAVNRKEGAMKDTARNILTTKEAVVHVVTEANVANANQTAALLP
                     PDESELDHTTFTTTDSEMVNVPSLNESSIRFEVKLYQHVEIKNDRNENTNDLLLLEIQ
                     KVYIDEDLFDLEKGYVDVENVQPVSRLAGDNYARLGETFTIKRPR"
     gene            3636..4223
                     /locus_tag="PTC08_002040"
     CDS             3636..4223
                     /locus_tag="PTC08_002040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HDK5683513.1"
                     /translation="MEHIFKQGEPSQPTFVLLHGTGGDEHDLLPVAEMLDPSYNVLGV
                     RGNVSENGMNRFFKRHGEGQYDVEDLKFRTTELHEFLESAANQYNFDLDKVVLVGFSN
                     GSNIAISLMLEENMPYKKGLLFAPLYPLEVPENLDLSGKSVYLSMGKNDPIVPVSESE
                     HVRAIFKDRGADVTEYWVNSHELTQGTVLAAKETL"
     gene            complement(4287..4790)
                     /locus_tag="PTC08_002041"
     CDS             complement(4287..4790)
                     /locus_tag="PTC08_002041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683514.1"
                     /translation="MMDNKKRFMNRMLGFVQGRDEREEQLINEKMKYLFLSSFWILLL
                     FLFISLAVDAYQNTLSVGTILILVLALFNAVSVLITLKKSDVYKEVVYSEEAYHAVLK
                     KIRFQSIFASVLFLVMSLLINILFAFLSHQRLNFAEVNFLGWLTGSVLFGIASYYYAK
                     SKITIEK"
     gene            complement(4797..4985)
                     /locus_tag="PTC08_002042"
     CDS             complement(4797..4985)
                     /locus_tag="PTC08_002042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006152985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDK5683515.1"
                     /translation="MNRLVEYRKKCGISQLELSRKVGVSRQTINLIENNKYNPSLKLC
                     ISICLTLGVTLNDIFWED"
BASE COUNT         1679 a          983 c          893 g         1444 t
ORIGIN      
        1 tacgatacac aactaaacaa taatgaaatt ggaggtatgc atcatgttaa agcttgcaga
       61 atggaaggat gaaaaagaaa cacttcatcg tttagcacaa attctaggta aacataaact
      121 cgcgagtgcc tttcaagaac cacaatgggg gcatgtcatt ttagatatta caacaacagg
      181 attttctact ggattattat tttatcaatc ctccacatat agtgtaagtg tcaaccttgt
      241 taaacatcta attttgattg aaacaaataa cggtgaagag accattccat taaaagatgg
      301 tgttacaatt caaagttatt atgaacaaat tcaagacgcc ttacatcgtc atgggataga
      361 ggtcactatt aatgaacgcc ctcaagaagt ggcagataca actttattct ctcaagatac
      421 aaaacgccac cattacaatg aagcaatcag taaagaagta ttgaagttaa tgtcatttgc
      481 aacgcgagcg cttcagtatt tcatcgcacc ttatcgtgca cgcaaaatta aaccaggact
      541 tttctggggg acttttgaca tctcttgttt agtccattac aactctttcc acgaaatgtt
      601 cgagccgaac caagtcattg aatatgctgc ttttgatgaa cactttatcg agtttggttt
      661 ctggtttggg gatgatcgat tcgaaggtcc tacattcttt atcttacctt atcctttcgt
      721 agacaaatca tttacattcg atcaaccatt gatttcagaa gcctactttg acaaacaact
      781 cactgaattg atttacgaaa tgaatgccat gacaccagaa accttggaga cactgtcaac
      841 attcttcaat caaggttttg agatattcaa gtctcattta tcttgggaaa actgtcacca
      901 ctatcatgtt ccattaaaaa tgaatgaaaa tcaaattcaa aaaatgccat atgcacatta
      961 agtaaatgca atcctataaa aaggcgagaa tctcatattt cttgatgaga ccctcgcctt
     1021 attcatttca atattttatt atccaccata tacatcatgg tattcaggtg ttctctctaa
     1081 tacgcttttt gcgaaaggac atgtagcatg aattttgaaa ttgttttcac gcgcatcctt
     1141 tactgcagct tctacaagtt gtttgcctac accttgacct cttagtgaat ccccaactac
     1201 tgtatggtcg atgataattt gagttccccc tggtacataa gtcatgattg cttcaggatt
     1261 actctctgaa tcacctacat aatacttatt atgccctttt ttaacttctg ccatcattat
     1321 gcctcctcaa atagttatcg ttcaccgccc attataaact tttcaatgta catatcaaag
     1381 catttggctc tctggtataa aaattaaact tattgcttta caaagttttc tttccacgtt
     1441 ataattgcct cgaattcgaa ataaaaggag gtgttggcat ttgcagagaa cagaaaccgc
     1501 actcaaaaca ttaatcggca tcaaacgaac caatgacatg attgataaga cgattcgcaa
     1561 tgatgtcaaa tcgtacggcc ttagtgtcac tgcgttcgct gtacttgaac ttttgtacaa
     1621 taaaggtgaa caaagtatac aacgaattca agaacgcatt ttgattgcca gtagcagcac
     1681 tacttatgtt gttaattctt tagaacaaaa gggctattta aaacgacgac aatgtcataa
     1741 agataaacgc gtaagttatg tagctttgac tgacaaaggc cagcagctca tggaaaaaat
     1801 cttcccagaa catgcacaag ctattgaaac tgtattttca gtcctgacag atgaagaatt
     1861 aaacacttta caacaagttt taaaaacatt aagtacacag ccatagtatg aactgagcag
     1921 tgtccacgta tttcatgcaa tatggtaatt gcattagaga ctattaattt aaaagggagt
     1981 ttttaaaaat gaaacaatat ccattaaaag gtatccacca cgtaacagcg atgacagatg
     2041 atgcagaacg taactatcac ttctttactg atgtgctcgg tatgagactt gttaaaaaaa
     2101 cagtaaacca agatgacatt tatacgtacc acactttctt cgctgatgat gaaggtcacg
     2161 ctggtacaga tatgacattc tttgatttcc caaacaaccc taaaggcgca ccaggtacaa
     2221 actcaatcag tcgtactggt ttccgtgtac caaacgatgc agctttagaa tactacaaag
     2281 cgcgtttcga cgagtttggt gtgaaacacg acgacatcga cacagtattc ggtactaaag
     2341 tattacgttt tgaagaagaa gacggtcaaa gatatcaact cttctcagat gaaaataata
     2401 caggtgttga accaggtgtc gcatggaaaa atggtcctgt acctcaagac aaagccattt
     2461 acggtttagg tccaatcgaa attacagtta gctactatga tgagttcaaa caagcattaa
     2521 tggaccttta tggtatgaaa cctatcaaag aagaagaaaa tgtaacactt ttagaagtag
     2581 gtaagggcgg taacggcggt caagttatct tacgtaaaga cgaaacaaca gaaagccgtc
     2641 caggttacgg tcaagtacac cacgtatcat tccgtgtaga aaatgacgaa gcaattgaag
     2701 aatggttcga aagatacaat gaattaggtg taagaagctc tggtattgta gaccgtttct
     2761 acttcaaagc actttacact cgtgtgggtc atatcttaat cgagctttca actgacggtc
     2821 ctggattcat gggtgacgaa ccatacgaaa ctttagggga aactttatca ttaccaccat
     2881 tcttagaaga tcaaagagag tacatcgaat ctgaagtacg cccatttgac acaacgcgta
     2941 gtacaaaata agagacacag tcatatgcaa aagtgatatg agaatggagg gcgatcatgt
     3001 acgcttttta cgcatctgaa ttatcaaagc aacaaatgta taaattttta atcggttctg
     3061 ttgtgcctcg acctatcgca ttaattacga gtcagtctga ggaaggtctt ctcaatattg
     3121 caccgttcag ctttttcaat attgtctctt cagaaccggc actattgtcg gtagcagtca
     3181 atcgtaaaga aggcgcgatg aaagacactg cgcgcaatat cttaacgacg aaagaagcag
     3241 tcgtacatgt cgtcactgaa gctaacgttg cgaatgcgaa tcaaacggct gccctgctac
     3301 ctcctgatga aagtgaattg gatcatacga cgtttacaac gacagattcg gaaatggtca
     3361 acgtgcctag cttgaatgaa agcagtatcc gatttgaagt caagctctat cagcacgttg
     3421 aaattaaaaa tgatcgcaat gaaaacacga acgatttgtt attacttgaa attcaaaagg
     3481 tttatataga tgaagattta tttgatctag aaaaagggta tgtagatgta gaaaacgttc
     3541 aacctgtgag ccgacttgct ggcgacaatt atgcgcgtct cggcgaaaca tttacaatta
     3601 aaagaccccg ataattataa aagaggtgaa atattatgga acatattttt aaacaaggtg
     3661 aaccatcaca gcctacattt gtcttattac acggtacagg tggagacgaa cacgatttat
     3721 tacccgttgc agaaatgcta gacccatcat acaacgtgtt aggtgtacgt ggtaacgtat
     3781 cagaaaacgg catgaaccgc ttcttcaaac gtcacggtga aggccaatac gatgtagaag
     3841 acttgaaatt tagaacaact gaattgcacg aattccttga aagtgcagca aaccaatata
     3901 acttcgactt agataaagtc gttttagttg gcttctcaaa cggctccaac attgcgatta
     3961 gcttaatgtt agaagaaaat atgccatata aaaaaggctt attattcgca ccactttatc
     4021 cattagaagt accagaaaat cttgacttat caggtaaatc tgtctacctc tctatgggta
     4081 aaaacgaccc aatcgtccct gtttcagaga gcgaacatgt ccgcgctatt ttcaaagacc
     4141 gcggtgctga tgtgactgag tactgggtca acagccacga attgacacaa ggtacagttt
     4201 tagcagcgaa agaaacatta taagtacgaa aaagagctta ggtgcttatc gcctaggctc
     4261 tttttttgat gctaattttg aaatggttat ttttctatag taattttact tttagcataa
     4321 tagtaggaag caataccaaa tagcacactt ccagtcaacc agcctaaaaa gttaacctct
     4381 gcaaaattaa gtcgttggtg tgaaagaaat gcaaacaata tattgattaa caacgacatt
     4441 acaaggaaca acacactcgc aaaaatggat tgaaatctta tttttttcaa cacagcgtga
     4501 tatgcttctt cgctataaac cacttctttg tatacatcag acttcttcaa agtaattaaa
     4561 acagatacag cgttaaacaa tgctagaacg agtattaaaa tagttccaac gctcaatgta
     4621 ttttgatatg catcaacagc aagactaata aaaaggaata ataaaagtat ccaaaaagag
     4681 ctcaaaaata agtacttcat tttttcatta atcaattgtt cttctctctc atctcgacct
     4741 tgcacgaaac ctaacatgcg attcatgaag cgctttttgt tatccatcat gtcatctcag
     4801 tcctcccaaa aaatatcatt caacgtaaca cctaatgtta aacaaatgct aatgcataac
     4861 ttcagggacg ggttgtactt attattttca atcaaattaa tcgtttgtct tgagacgcct
     4921 acttttcgag acaattctaa ttgggaaatc ccacattttt tcctatattc caccaatcga
     4981 ttcatcatgt atgcccctt
//
LOCUS       DANHOL010000150         4974 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.152, whole genome shotgun sequence.
ACCESSION   DANHOL010000150 DANHOL010000000
VERSION     DANHOL010000150.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 4974)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4974)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4974
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.152"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(640..1191)
                     /locus_tag="PTC08_002043"
     CDS             complement(640..1191)
                     /locus_tag="PTC08_002043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GbsR/MarR family transcriptional regulator"
                     /protein_id="HDK5683516.1"
                     /translation="MARAKTYEAKLEEAKDIVINSIAETMDLYGINRSVGNLYGIMLF
                     KESMTLDEMRQELQMSKPSMSAGVKKLQEFDIVKQRLTRGSRKQHFEAEKDFFEFFCN
                     FFTQKWNREISINLAALKESEAMIDEIIAADAVADAVKEEAVEIKAQLEDSRVYYYWL
                     ESITDALKSGKIFEYFPIPESKE"
     gene            1413..2906
                     /gene="betB"
                     /locus_tag="PTC08_002044"
     CDS             1413..2906
                     /gene="betB"
                     /locus_tag="PTC08_002044"
                     /EC_number="1.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="betaine-aldehyde dehydrogenase"
                     /protein_id="HDK5683517.1"
                     /translation="MEAVNRLSRRQYIDGEWVESSNKATREIINPYNQEVILEVAEGT
                     EADVERAILAARRAFDEGRYANETGETKGQKVRAIADKIKENREELAYLETLDTGKTY
                     EESLVDMDDIHNVFMYFAGLADKDGGELINSPIENTESKVVKEPIGVVTQITPWNYPL
                     LQASWKIAPALATGCSLVMKPSEITPLTTIRVFELMEEVGFPKGVINLVLGAGSEIGD
                     VLSSHPEVDLVSFTGGIKTGKHIMKKAADHVTNIALELGGKNPNIIFDDADFDLAVDQ
                     ALNGGFFHAGQVCSAGSRIIVHNSIKDKFEKALIDAVKKIRLGNGFDKSTELGPLISA
                     EHRAKVENYMKVAKEDGATIAVGGQRPEREDLQNGFFFEPTVITDCDTSMRIVQEEVF
                     GPVVTVEGFETEEEAIRLANDSIYGLAGGVFTKDIGKAQRVASKMRMGTVWINDFHPY
                     FAQAPWGGYKQSGIGRELGHQGLEEYLETKHILMNTNPEPVKWFSQS"
     gene            3034..4728
                     /gene="betA"
                     /locus_tag="PTC08_002045"
     CDS             3034..4728
                     /gene="betA"
                     /locus_tag="PTC08_002045"
                     /EC_number="1.1.99.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016426039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="choline dehydrogenase"
                     /protein_id="HDK5683518.1"
                     /translation="MSKAYDKMYDYIIIGGGSAGSVLGARLSEDKDKKVLVLEAGRSD
                     YPWDLLIQMPAALMYPSGNRFYDWKYETDGEPHMGGRKVFHTRGKVLGGSSSINGMIY
                     QRGNPLDYEKWGQPEGMDTWDYAHCLPYFKRLETTFGADADDPIRGLNGPIKLRRGPA
                     DNPLFHAFFDAAVEAGYRKTKDVNGFRQEGFGPFDSQIHNGRRVSASRAYLRPAMKRP
                     NLTVKTRAFVEKLHFDGNTVTGVTYKRNGRLHKVLAKEVILSGGAFNTPQLLQLSGIG
                     DSEHLRSLGIEPRIHLPGVGENFEDHLEVYIQHTCKEPVSMQPSLNKLKMPFIGLEWL
                     TRRTGAAASNHFEGGGFVRSNDEVDYPNLMFHFLPLAVRYDGQKAETAHGYQVHVGPM
                     YSNSRGSLKITSTNPYVKPKFVFNYLSTEEDKREWVEAIRVARNILKQPALDQFNGGE
                     ISPGPSVQTDEEILDWVRRDAETALHPSCSAKMGPASDPMAVVDPLTMKVHGMENLRV
                     VDASVMPTTTNGNIHSPVLMLAEKAADIIRGRQPLEPEYVDYYIHGKSHPDAGAID"
BASE COUNT         1581 a          962 c         1042 g         1389 t
ORIGIN      
        1 tagatgttta tataccaata tctttgacga tgatgggtac tttatgcatg accattgttt
       61 tgtataaaaa gtcaaaaaaa ataggctccc gttacaccac taacgagagc acctcatcat
      121 aggctataat gattaacata cgttgagtta ccagctcact aatatgttgc tattttttgc
      181 acctagctca agtttaacca acttgctagg tgttttttga taatcaaatt atagcaccac
      241 gataaagaag agacaacact ttttaaatgc cagtcagaat gctcactata cccactctca
      301 aatcgggtcg agaagaagag gaaaaggttt tagagaagta ttttatccat ctcccaaagt
      361 cgaagtgatg taagtttata agtactgata gaaaataaag cttgctcaca ccccagattg
      421 caagaaagcc cgagactccc gagggatcaa ccgcagtcga aaatccgcta gcgcttcacc
      481 tatgtatcat ttaatcaagc gttagctagt tgagacaagg cctctgggaa cgcgagggca
      541 aattctgcaa tcggtctgag attgctatcc aatgcatatt ttctatacaa aaaagcttta
      601 tgcatgtcat tcaaaccaca tcgcataaag cccttatcat cattccttcg actccggaat
      661 cggaaaatat tcaaaaatct tcccactctt caacgcatca gtaatcgact caagccaata
      721 ataatacaca cgagaatctt ccaactgcgc cttaatctca acagcctctt ctttcaccgc
      781 atccgccaca gcatctgccg caataatctc atcaatcatt gcctcagact ctttcaacgc
      841 agccaaatta atcgaaattt cacgattcca tttttgcgtg aaaaaattac agaaaaactc
      901 aaagaaatct ttctcagcct caaaatgttg tttacgactg ccgcgtgtta ggcgttgctt
      961 cacaatatca aactcttgca actttttcac acccgcgctc atactcggct tactcatctg
     1021 taactcttgg cgcatttcat cgagtgtcat actttcttta aaaagcataa tgccatacaa
     1081 atttccaacg ctacgattaa tgccataaag gtccatcgtc tcagcgatag aattaatgac
     1141 aatatctttc gcttcttcta atttggcttc atatgttttt gcacgtgcca taatgacgac
     1201 acctcctatc atcataaaac attttaacat ttaacttgag aaaagcgagt tattaattaa
     1261 aaaaatttgt aacattcttt atcaatttaa cgctttttgt aggaaggtgt aaagcaatcg
     1321 ctagcagttg acagtgtcat ttttcatatg ttaaagttaa atttgtgaaa ttcgttaaat
     1381 aaaaacttaa caaacttaac ggagggatac tgatggaagc tgtaaaccga ttatctcgtc
     1441 gccaatatat agacggtgaa tgggtcgaga gtagtaataa agcaacacgt gaaatcatta
     1501 atccgtacaa tcaagaggtc attttagagg tggcagaagg aactgaagca gatgttgaac
     1561 gtgctatcct tgcagctcgt cgcgcatttg atgaagggcg ttatgcgaac gaaacgggtg
     1621 aaacgaaagg ccaaaaagtg cgtgcgattg cggacaaaat taaagaaaac cgtgaagagt
     1681 tagcttattt agaaacatta gatacaggta aaacgtatga agagtcatta gttgacatgg
     1741 atgacattca taacgtgttt atgtattttg caggtttagc agataaagac ggtggcgaat
     1801 tgattaactc accgattgaa aacacagaaa gcaaagttgt gaaagagccc atcggtgttg
     1861 tgacacaaat cacaccgtgg aactatccgc tattacaagc atcatggaag attgcgcctg
     1921 cattagcgac aggttgttcc cttgtaatga agccaagtga aatcacacct ttaacgacca
     1981 ttcgtgtttt tgaattaatg gaagaagttg gttttccaaa gggtgtcatc aatttagttt
     2041 taggtgcagg ttctgaaatt ggcgatgttt tatcttcaca ccctgaagtg gacttagtgt
     2101 cattcacagg tggtattaaa acaggtaaac acattatgaa aaaagctgcc gatcatgtga
     2161 caaacatcgc gcttgaatta ggcggtaaaa atccaaatat tatttttgat gatgcagact
     2221 ttgatcttgc ggtagaccaa gcgttgaatg gtggcttttt ccacgctggt caagtatgtt
     2281 cagcaggttc acgtattatc gttcacaatt ctattaaaga caaattcgaa aaagcgttaa
     2341 tcgatgcggt gaaaaaaatc cgcttaggta acggttttga taagtcgacc gaactcggac
     2401 cattgatttc agcagaacat cgtgcgaaag ttgaaaatta tatgaaagtc gcgaaagaag
     2461 atggcgctac gattgcggtt ggcggtcaac gcccagaacg tgaagaccta caaaatggct
     2521 ttttctttga gccaactgtg attacagatt gtgatacatc gatgcgtatc gttcaagagg
     2581 aagtatttgg tcctgttgtg acagtggaag gctttgagac agaagaagaa gcgattcgtt
     2641 tagcgaacga ctctatttac ggtcttgcgg gtggtgtttt tacgaaagat atcggtaaag
     2701 cacaacgcgt cgcaagcaaa atgagaatgg gtaccgtttg gattaatgac ttccatcctt
     2761 atttcgcaca agccccatgg ggtggttaca aacaatcagg tatcggccgt gaactcgggc
     2821 atcaaggttt agaagaatat ttagaaacga aacatatttt aatgaatact aaccctgaac
     2881 cagtgaaatg gtttagccaa tcttaataca cgaatgttga acagattgac gaagaaggtc
     2941 atgattaaca tcacgtcccg acaaccacga cagttcatga ctttttgtac ataaaaagat
     3001 gagaaaatat aaagttgtgg aggagttttt gttatgagta aagcgtacga taaaatgtat
     3061 gactatatca ttatcggtgg cggtagtgca gggtctgttt taggtgcacg tttaagcgaa
     3121 gacaaagata aaaaggtgtt ggtcctagaa gcaggacgta gtgactaccc atgggactta
     3181 ttaattcaaa tgcctgccgc tttaatgtat ccatctggca atcgtttcta tgactggaaa
     3241 tatgaaacag acggtgaacc gcatatgggt ggccgtaaag tattccacac acgtgggaaa
     3301 gtgttaggtg gttcaagttc aattaacggt atgatttatc aacggggtaa tccgttagac
     3361 tatgaaaaat gggggcaacc tgaaggcatg gacacatggg attatgcaca ctgtctacct
     3421 tacttcaaac gtttagagac gacattcggc gcagatgctg atgatccgat tcgtggctta
     3481 aatggcccga ttaaactacg tcgaggtcca gctgataacc cattattcca cgcctttttc
     3541 gatgcggcag ttgaagcagg ttatcgcaaa acaaaagacg tgaatggttt ccgtcaagaa
     3601 ggttttggtc catttgacag ccaaattcat aacggtcgtc gtgtatcagc ttcacgtgcg
     3661 tatttacgcc cagccatgaa acgcccgaat ttaacggtaa aaacacgcgc atttgtagaa
     3721 aagcttcatt tcgatggtaa tacggttaca ggtgtgacat ataaacgtaa cggccgttta
     3781 cacaaagtgc tcgcgaaaga agtgatttta tctggcggtg cattcaatac accacaatta
     3841 ttacaactgt caggtattgg tgattcagaa catttacgtt cactgggtat cgaaccgcgt
     3901 attcacctac caggtgtggg tgaaaacttt gaagaccatt tagaagttta catccaacat
     3961 acatgtaaag aacctgtatc gatgcaacca agtctaaata aactaaaaat gccgttcatc
     4021 ggtttagaat ggctcacacg ccgtacaggt gccgcggcaa gtaaccactt tgaaggtggc
     4081 ggcttcgtgc gctcaaatga tgaagtagat tatccaaact taatgttcca cttcttacca
     4141 ttagctgtac gttacgacgg tcaaaaagca gaaactgcac atggctatca agtacacgtt
     4201 ggtccgatgt attctaactc acgtggtagt ttgaaaatta cgtcaacgaa cccttatgtg
     4261 aagccgaaat tcgtgtttaa ctacttatca acagaagaag ataaacgtga atgggttgaa
     4321 gccattcgtg tcgcacgtaa cattttaaaa caacctgcat tagaccaatt taacggtggc
     4381 gaaatttcac caggaccaag tgtacaaaca gatgaagaaa ttttagactg ggtacgtcgt
     4441 gatgcggaaa cagcattaca cccatcatgt agtgcgaaaa tgggaccagc gagcgatcca
     4501 atggcagtgg tagacccatt aacaatgaaa gtccatggta tggaaaactt acgtgttgtg
     4561 gatgcatctg taatgccaac tacgacaaat ggtaatattc attcacctgt attgatgttg
     4621 gcggaaaaag cagctgacat catccgtggt agacaaccat tagaacctga atatgtagat
     4681 tattatattc atggtaagag tcatccagat gcaggtgcga ttgattaaga gatgatcata
     4741 atagcgattg attttgaggt tgttgcgacg atttcaagat cagtcgcttt tttatgtagg
     4801 aaacgaaaaa gaggattaaa cattttcagt ttcttctatt gtaaaagcaa taatctcaaa
     4861 actatcgtat tttatggttg aatatatgag gtataagttt ctgctttttg ggataatctt
     4921 ttcagagcgc ttaaatttca atcgctaata ctaacgcttc tgatacagaa aagc
//
LOCUS       DANHOL010000151         4959 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.153, whole genome shotgun sequence.
ACCESSION   DANHOL010000151 DANHOL010000000
VERSION     DANHOL010000151.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 4959)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4959)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4959
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.153"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            151..771
                     /locus_tag="PTC08_002046"
     CDS             151..771
                     /locus_tag="PTC08_002046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001797828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDK5683519.1"
                     /translation="MELNSRQEHIVEIVKSDGPITGEKIAEQLNLTRATLRPDLAILT
                     MAGFLEARPRVGYFYSGKSSSQLLTEKFKKYVVKDYQSQPVILKSNVTVYEAICSIFI
                     EDVGTLFIVNEDNELVGVCSRKDLLRASMAGQDIHSMPVNIIMTRMPNIVLLKENDLV
                     LYAARQMIHKEIDSIPIVREKDNGKFEVTGRISKTTITKLFVSLFD"
     gene            786..1613
                     /locus_tag="PTC08_002047"
     CDS             786..1613
                     /locus_tag="PTC08_002047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="kinase/pyrophosphorylase"
                     /protein_id="HDK5683520.1"
                     /translation="MTNVKIIIASDSVGETAELVAKACMSQFNYSDCSNHILRYPYIE
                     TKENIDEVIAVVREVESIIIYTLVKPDIRAHIQENIDKYGLKSVDVMGPMLNVMEDTF
                     HKKPLNEPGVVHKLDEDYFKKIEAMEFAVKYDDCKDPKGLPKADIVLIGISRTSKTPI
                     SQYLAHKRYKVMNVPIVPEVTPPESLFEVDPKKCVALKISSDKLNAIRKERLKQLGLS
                     DSARYATDQRIAEELAYFNQIVERIGCPVLDVSNKAIEETANNIIQIIEHNHSFTSE"
     gene            1686..3473
                     /locus_tag="PTC08_002048"
     CDS             1686..3473
                     /locus_tag="PTC08_002048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HDK5683521.1"
                     /translation="MRIPQNTIEEIKQQSDILDIVSEYVKLEKRGRNYIGLCPFHDEK
                     TPSFTVSEDKQICHCFGCKKGGNVFQFIQEIENISFTEAVQHLGERVNIKVDIEETND
                     DMHIASDDLKMIQMHEEILSYYHYLLKKTVEGEQALNYLYERGFTDDMIDARKIGFAP
                     DSSHFATDFMEKKGYDLQLGYEAGILSRNDTDFNYYDRFRNRIIFPLANAQGRIVGYS
                     GRTYTEQEPKYLNSPESPIFQKRKLLYNLSEARKSIRQKDEVILLEGFMDVIKADDAG
                     LKNVVASMGTQLSNEHITFLKKLCSHVTLMFDGDFAGIEATMKTGQQLLQQQFNVYVV
                     QLPSKMDPDEYIMKYGAEKFNSFVNTEKKAFVSFKLQQHQHEIQNNDLAYEKYYHMFV
                     EDAALISSHILRNKVVQNASELFKVSADSLNKEVESVHPQQHFEQAGPIPIQTTQWMQ
                     HNKYEKAERAILKHFIMDKEVFLSFYQDIDETDFTNEYFKRIFITLREFYSKFDSFTM
                     SEFVTYIDHDILKEVLIYLWDYPLNREPYENEIADYIQVMTEHRYSESIESLHEKLRE
                     ATRVGDIASQKYFLEMIVNKNRARLKSQE"
     gene            3491..4600
                     /gene="rpoD"
                     /locus_tag="PTC08_002049"
     CDS             3491..4600
                     /gene="rpoD"
                     /locus_tag="PTC08_002049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011275651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoD"
                     /protein_id="HDK5683522.1"
                     /translation="MSDNQVKVIKKETIDPTLTLEDVKKQLIEKGKKEGHLSHEEVAD
                     KLQNFDMDSDQMDEFFDMINDNDIQLINEKDSSDTDDKLNPNDLSAPPGVKINDPVRM
                     YLKEIGRVDLLSAQEEIELAKRIEQGDEVAKARLAEANLRLVVSIAKRYVGRGMLFLD
                     LIQEGNMGLIKAVEKFDFSKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETIN
                     KLIRVQRQLLQDLGRDPAPEEIGEEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHL
                     GDFIEDQEAQSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVG
                     KVFGVTRERIRQIEAKALRKLRHPSRSKRLKDFMD"
BASE COUNT         1728 a          796 c          991 g         1444 t
ORIGIN      
        1 catagatgcg catcagaaag gagtcaattc gagtaacaaa tgatgatacg aaatgtaaaa
       61 aatatagtgc taatatgtaa aaagggggca cttctgctat ttaattagca taaccgctta
      121 tttgtcggtt ttaaatagac agagactcag atagaactca attcaagaca ggaacacatt
      181 gttgaaattg taaagtctga tggacctatt actggagaaa aaattgcgga acaactgaat
      241 ctaacacgtg caacattacg cccagacctt gctattttaa caatggcagg atttttagag
      301 gcaagaccac gcgtcggtta tttttattca ggaaaatcga gctcgcaact tttgaccgaa
      361 aaatttaaaa aatatgttgt taaagattac caatcccagc ccgtcatttt aaaaagtaat
      421 gttaccgttt atgaagcgat ttgttcaatt tttattgaag atgtaggaac attatttatc
      481 gttaatgaag ataatgaact tgtcggcgta tgttcaagaa aagatttgct tagagcgtcg
      541 atggcaggac aagatattca ttcgatgcct gttaatatca ttatgacacg tatgccgaat
      601 attgtattac ttaaagaaaa tgacctcgta ctttatgctg cgagacagat gattcataaa
      661 gaaatcgact caatacctat tgtaagagaa aaagataacg gcaaatttga agtcactggc
      721 cgtatctcca aaacaacgat tacgaaatta tttgtatcgt tgttcgatta gtaggaggat
      781 aatctatgac gaatgtaaaa atcattattg cttcagactc agtgggagaa acagctgagt
      841 tagtcgcaaa agcgtgtatg tctcaattta attatagcga ttgttcaaat catattcttc
      901 gctatcctta tattgaaacg aaagaaaata tagatgaagt catagcggtt gttagagaag
      961 tagaatctat tattatctat acactcgtga aaccagatat tagagcgcat attcaagaaa
     1021 atatcgacaa atatggcctc aaatccgttg acgtcatggg accaatgctc aatgtaatgg
     1081 aagatacatt tcacaaaaaa ccattgaatg agccgggtgt cgtgcataaa ttagatgagg
     1141 attactttaa aaaaattgaa gcaatggaat ttgcagtgaa atacgacgat tgtaaagatc
     1201 caaaagggtt gcctaaagcg gacattgtgc ttatcggtat ctctcgtaca tcaaagacgc
     1261 ctatctcaca atatttagcg cataaacgtt ataaagtgat gaatgtcccg attgtccctg
     1321 aagtgacacc gccggaatca ttatttgaag tggacccgaa aaaatgtgta gcgctcaaaa
     1381 ttagttccga taaattaaat gctattcgaa aagagagatt aaaacaactt ggcttatcag
     1441 attcagcacg ttatgcaact gaccaacgta tcgctgaaga gttagcgtat ttcaatcaaa
     1501 tcgtcgaacg tattggttgc ccagtactcg atgtttcaaa taaagcaatt gaagagacgg
     1561 cgaataacat tattcaaatt attgagcata atcattcctt tacgagcgaa taagttgtat
     1621 aatgttacaa ctatgtgtaa attgtaccta taacatagag atgaatggtg atacaaggtg
     1681 atgacatgag aataccacaa aatacgattg aagaaattaa gcagcagtct gatatactcg
     1741 acattgtaag tgaatatgta aagcttgaaa aaagagggcg caattatatc ggtttgtgtc
     1801 cttttcatga tgagaagact ccatcgttca ctgtttctga agataagcaa atttgtcatt
     1861 gctttgggtg taaaaaggga ggcaatgtct ttcagtttat tcaagaaatt gaaaatatat
     1921 cctttacaga agctgtccaa catctcggcg aacgtgtcaa tataaaggtt gatattgagg
     1981 aaacaaatga tgatatgcat atcgcttctg atgatttaaa gatgattcaa atgcatgaag
     2041 agatattgtc atattatcat tatttgttga aaaaaactgt tgaaggtgaa caagctttaa
     2101 attatttata tgaacgtggc tttacagatg atatgattga tgcgcgtaaa attggctttg
     2161 cacctgattc atcccatttt gctacggatt tcatggaaaa gaaaggttat gatttacagc
     2221 taggctatga ggctggcatt ttgtcccgta atgacacaga ttttaattac tacgatcgct
     2281 tccggaatcg tattattttc ccacttgcta atgcacaagg acgtatcgta ggctattctg
     2341 gtcgaacgta cacagagcaa gaaccgaagt acttgaatag tccagaatca cctattttcc
     2401 aaaagcgcaa actgttatac aacttgtctg aagcacgcaa aagtattcgt caaaaagatg
     2461 aagtcattct tcttgaaggt tttatggatg tgattaaagc agatgatgca ggtttgaaaa
     2521 atgtggtagc aagtatgggc acacagcttt ctaatgaaca tatcacattt ttaaagaagc
     2581 tctgtagtca cgtcacgtta atgtttgatg gggactttgc gggtatcgaa gcgacaatga
     2641 aaacaggaca acaactttta caacaacagt ttaacgttta tgtcgtacaa ttaccgtcaa
     2701 aaatggatcc agatgaatat attatgaaat acggtgcgga gaagtttaat agttttgtga
     2761 ataccgagaa aaaggcattt gttagcttca aacttcaaca acatcagcat gagattcaaa
     2821 acaatgattt agcatatgaa aagtactatc acatgtttgt tgaagatgct gcgttgattt
     2881 catctcatat tttaagaaat aaagtcgtac aaaatgcttc agaattgttt aaagtgagcg
     2941 ctgatagtct aaataaggaa gtagaaagtg ttcacccaca acaacatttt gaacaagccg
     3001 gacctattcc gatacaaacg acgcagtgga tgcaacataa caaatatgaa aaagctgaac
     3061 gtgcaatttt aaagcatttc attatggata aagaagtatt tttaagtttt tatcaagata
     3121 ttgatgaaac agactttaca aatgaatatt ttaaacgtat atttattacc ttacgagaat
     3181 tttattcaaa atttgattcg tttacgatga gcgaatttgt cacatatata gatcacgaca
     3241 tattaaaaga agtgttgata tatttatggg attatccact taaccgggaa ccgtatgaaa
     3301 acgaaatcgc tgactatatt caagtgatga ctgaacatcg ctattctgaa tcgattgaat
     3361 cactccacga aaaattgcga gaagcgacac gtgtaggaga tattgcatct caaaaatact
     3421 ttttagagat gattgttaat aaaaatagag ctagattgaa gagtcaagaa taattttggg
     3481 aggccttttt atgtcagata accaggtaaa agtaatcaaa aaagaaacca tcgatccgac
     3541 actcacatta gaagatgtaa aaaaacaact tatagaaaaa ggtaaaaaag aaggtcatct
     3601 aagtcatgaa gaggtagcag ataaattaca aaattttgat atggattctg atcaaatgga
     3661 cgaatttttc gacatgatta acgacaatga cattcaactt attaatgaaa aagacagttc
     3721 tgatacagat gataaattga accccaatga tctaagtgca cctccaggcg ttaaaattaa
     3781 tgaccctgta cgtatgtatt taaaagagat cggtcgtgtt gatttgttaa gtgcacaaga
     3841 agaaattgag cttgccaaac gcattgaaca aggtgatgaa gtagcgaaag cacggttagc
     3901 tgaagcgaac ttacgtcttg ttgtcagcat agctaaacgt tatgtcggtc gtggcatgtt
     3961 atttttagat ttaattcaag aaggtaatat gggcctcatc aaagcagttg aaaaatttga
     4021 ttttagtaaa ggtttcaagt tttctactta tgcgacatgg tggattcgac aggcgattac
     4081 acgtgcgatt gctgaccaag cacgtacgat tcgtattcca gtacacatgg ttgaaacgat
     4141 taacaaactg attcgtgttc aacgtcaatt attgcaagat ttaggtcgtg atcccgcacc
     4201 tgaagaaatt ggtgaagaaa tggatttacc accagaaaaa gttcgagaaa ttcttaaaat
     4261 tgctcaagaa ccagtgtcac ttgaaacacc aattggcgaa gaagacgata gccatcttgg
     4321 agattttatt gaagatcaag aagcacaaag cccgtctgat catgcggctt atgaattgtt
     4381 gaaagaacag ttagaagatg ttctcgatac attaactgac cgtgaagaaa acgtattacg
     4441 cttacgtttt ggtttagatg atggtcgtac acgtacactt gaagaagtag gtaaagtgtt
     4501 cggtgttacg cgtgaacgaa ttcgtcaaat cgaagctaaa gcattacgca aattaagaca
     4561 tccaagtcga agcaaacgct taaaagactt tatggactaa tacaattgaa agagatgaag
     4621 cataaaaatt tttgatgctg ttgatgcaat atttttgtta aacttgtcct tcctatgaat
     4681 tgtgggtttt gatttccttc atggcttcgc gttcctagtg gtcggtcata caatgaatta
     4741 acactcgatt caactgttac atttgatgag gcgttagtgg attttgggag tagtacagaa
     4801 atctcatgtg taacaaagat ttcgtcgcac tgacccgcat ggctgactag acttcttaaa
     4861 agcgagcacc ttgagagggc agacagcata cacgcaatct cttaagcgtc ttagcctttt
     4921 gatcaaactt acatcaaatg caacagctta aggcaagtt
//
LOCUS       DANHOL010000152         4900 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.154, whole genome shotgun sequence.
ACCESSION   DANHOL010000152 DANHOL010000000
VERSION     DANHOL010000152.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 4900)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4900)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4900
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.154"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            149..2053
                     /locus_tag="PTC08_002050"
     CDS             149..2053
                     /locus_tag="PTC08_002050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="triacylglycerol lipase"
                     /protein_id="HDK5683523.1"
                     /translation="MHKINKRNTFALRKRPMGVSSILIASGLLIFAGHDGKAAERSAS
                     QDVGVVAKQQELSLYQQKDGDEPTRHDAPTVLNHEREMTEKASVDHLHTYTRSSDTTT
                     VSKELDNEKIYGTVPPSPRVPKDQSNEATPVKTEDSHTQLTQKPELDSEFSAIENDNK
                     EAKEQTKHAQRPESDFSVVEQQHKDKYITREVKQAPKVVEASTEDVAPTDADKRNKGV
                     VPDSKINTPSPRLTTHSETQATSAPTITKLDKSAVENKWKHKDPIIFVHGFSGLVGDN
                     APKGSNYWGGTKYKMIEELRHAGYNVFEASVSAFGSNWARAAELYAYIKGGIVDYGAA
                     HAAKYGHQRYGKTYEGILPNWHSDQKIHLVGHSMGGQTIRLLEQLLRNGDLEEMAYQK
                     EHGGTISELFQGNQDNRITSITTIATPHDGTVASDDLGNTEIIKRLLYEYNVFAGRTG
                     QTIDYGLKHWGLEQREGETYAEYAKRASKSPLFTSQDTALYDLTREGAKKLNARTDLN
                     PNIYYKTYTGSATYETVFGTQIAHPYMNIAHVLTGDLIGMTENPAWRENDGLVSVISS
                     QHPEDEAFEFVDFTAPAVKGIWQVTPTLKGWDHTDFTGKDLLDWRRSGAELQNFYHRL
                     VEDLVRKEEV"
     gene            2247..2504
                     /locus_tag="PTC08_002051"
     CDS             2247..2504
                     /locus_tag="PTC08_002051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_501216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system Phd/YefM family
                     antitoxin"
                     /protein_id="HDK5683524.1"
                     /translation="MIIKTPTNARKEFYELLKQVNDNHEPIIISGSKSENNAVIVSQE
                     DWDSIQETLFLEYTGTMDKVRAREKDDSGYTNIDDIDWDNL"
     gene            2504..2770
                     /locus_tag="PTC08_002052"
     CDS             2504..2770
                     /locus_tag="PTC08_002052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Txe/YoeB family addiction module toxin"
                     /protein_id="HDK5683525.1"
                     /translation="MGNYSVLIKNSAKNDLKKIKKSLLKEQFSKIIEVLKINPYEASQ
                     SFEKLQPKHSARYLRRLNHQHRVVYTVDDEKREVYIFSAWSHYE"
     gene            complement(3114..3215)
                     /locus_tag="PTC08_002053"
     CDS             complement(3114..3215)
                     /locus_tag="PTC08_002053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016898541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2648 domain-containing protein"
                     /protein_id="HDK5683526.1"
                     /translation="MKKLLVVATVLTAAFVALKRYQEHVNKAPNIEY"
     gene            complement(3229..4722)
                     /gene="mqo"
                     /locus_tag="PTC08_002054"
     CDS             complement(3229..4722)
                     /gene="mqo"
                     /locus_tag="PTC08_002054"
                     /EC_number="1.1.5.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase (quinone)"
                     /protein_id="HDK5683527.1"
                     /translation="MPTQSEPKDIVIIGAGVLSTTFASMIKDLEPEWNLKLYERLDSP
                     GVESSNERHNAGTGHAALCELNYTVKQPDGSIDIEKAKEINEEFEISKQFWSHLVKSK
                     NIDTPRDFINPLPHISFVRGKNNVQFLKDRYNKMKDFPMFDNIEYTEDIEVMRKWMPL
                     MMQGRSASDIMAASKIDEGTDVNFGELTRKMAKSIEAHKNADVHYNHEVRDFNRRKDG
                     KWEVTVVNRNTGESHVQLADYIFIGAGGGAIPLLQKTGIPESKHLGGFPITGQFLMCT
                     NPDVIEEHGVKVYGKEPPGTPPMTVPHLDTRYINGRKALLFGPFASIGPKFLKNGSNL
                     DLFKSVKPYNITTLLAAAVKNLPLIKYSIDQILMTKEGCMNHLRTFYPEAKDQDWELY
                     TAGKRVQVIKDTEEYGKGYIQFGTEVVNSQDHTVIALLGESPGASTSVSVALEVLERN
                     FAEYVPEWTPKLQEMIPSYGKSLIEDVDLMRKIRQQTSKDLELNYYE"
BASE COUNT         1621 a          834 c          961 g         1484 t
ORIGIN      
        1 taaattataa tgccaaatct aaaatttaaa atataaaata gatttacagt taagcataga
       61 aataatacag ttaggagaaa ctttaactat atacagatgg atttgttata ttgggagtgt
      121 caccattaaa tttcaagggg gaatacaatt gcataaaatt aataaacgta acacttttgc
      181 actgagaaaa cgaccaatgg gtgtttcatc gattttaatt gcatcggggt tgttgatatt
      241 cgcagggcac gacggaaaag cagcagaaag aagtgcatct caagacgtag gagttgtagc
      301 caaacaacag gaattatcac tctaccaaca gaaagatgga gatgaaccca cgcgtcatga
      361 tgctccgact gttttaaatc atgaacgaga aatgacagaa aaagcttctg ttgaccacct
      421 tcatacatat acacgctctt cagatacaac aactgtatct aaagaactcg acaatgaaaa
      481 aatatatggt acagttccac catcaccgcg agttcctaaa gatcaatcta acgaagccac
      541 gcctgtaaaa acagaagata gccatactca attaacacaa aagccagagt tagattctga
      601 gttttcagct attgaaaatg acaataaaga agcaaaagaa caaacaaaac atgcacaacg
      661 accagagtca gatttttcgg tagtagaaca acaacataaa gacaagtata ttacgagaga
      721 ggttaaacag gctcctaaag tggtagaggc atcaacagaa gacgttgcac cgacagacgc
      781 tgataaaagg aataaaggcg ttgtaccaga ttcaaaaata aacaccccct caccgcgtct
      841 aacgacacac agtgaaacac aagcaacttc agcaccgact ataacaaaac ttgataaatc
      901 ggctgttgaa aacaagtgga agcataaaga tccaatcatt tttgttcatg gcttttctgg
      961 cttagtaggt gataatgcgc cgaaaggttc gaattattgg ggcgggacaa aatacaaaat
     1021 gattgaagaa ctgcgtcatg cgggttataa cgtatttgaa gcgagcgtaa gtgcatttgg
     1081 aagtaactgg gcacgtgctg ctgaattata cgcttatatt aaaggcggta tcgttgacta
     1141 cggggcggcg cacgcagcaa aatacggtca tcaacgttac ggtaaaacat atgaaggtat
     1201 tttacctaat tggcactcag atcaaaaaat acatttagta ggtcatagta tgggcggaca
     1261 aacgattcgc cttttagaac aattattgcg taacggagat ttagaagaaa tggcgtacca
     1321 aaaagagcac ggtggcacaa tcagtgaact tttccaaggc aatcaagata atagaattac
     1381 ttcgattacg acaattgcga cgccacatga tgggactgtt gcgtcagatg atttaggtaa
     1441 tacagaaatc attaaacgct tgctatatga gtacaatgta ttcgcagggc gtacaggaca
     1501 gactatagat tatggcttaa agcattgggg attagagcaa cgtgaagggg aaacctacgc
     1561 tgaatatgca aaacgtgcta gcaaaagccc tctttttaca tctcaagata cggcattgta
     1621 cgatttaact cgtgaaggag cgaaaaaact taacgcacgt acagatttga atcctaatat
     1681 ttattacaag acgtatacag gctctgccac atatgaaacg gtttttggta cacaaattgc
     1741 acatccttac atgaatattg cgcacgtctt gactggtgac ttaatcggta tgacagagaa
     1801 ccccgcttgg agagagaatg atggcctcgt ttcagttatt tcatcacagc accctgaaga
     1861 tgaagcgttt gagtttgtcg attttactgc gccagctgtc aaagggatct ggcaagtcac
     1921 gccaacatta aagggatggg accatactga ctttactggt aaagatttac tggattggcg
     1981 acgaagcggt gcggagttgc aaaactttta tcatcgttta gtagaagatt tagtacgtaa
     2041 agaagaagta tagcgcagtg aaaaaaggtt ccatacaata gggttgatga tttgtgaaat
     2101 agtcatacgt aaacttgaaa tgaaatactt taaacatagg tcaatatgtt gtttgtattt
     2161 ttaatcagaa ttgagaaagt catatcattt gcgtacgtaa aaacgtacgt tataatataa
     2221 ctatactagt aaaggaagtg atgttaatga ttattaaaac gcctacaaat gctagaaaag
     2281 agttttacga gttgttaaaa caagttaatg ataatcatga gcctattata ataagtggtt
     2341 ctaaaagtga aaacaatgca gttattgtta gtcaggaaga ctgggatagt attcaagaaa
     2401 cgttatttct cgaatacact ggtactatgg ataaagtaag agcacgtgaa aaagatgata
     2461 gtggttatac caatattgac gatatagatt gggataattt gtaatgggta attattctgt
     2521 tttaattaag aattcagcca aaaatgactt aaaaaaaatt aaaaagtcac ttcttaaaga
     2581 gcaattttca aaaattattg aagttttaaa gattaaccct tatgaagcta gtcaatcttt
     2641 tgagaagcta caaccgaagc attcagctcg atatttaagg cgtctgaatc atcaacatag
     2701 agttgtgtat acggttgatg atgaaaaaag agaagtttat attttttctg cttggtcaca
     2761 ttatgagtga gcggtatgta aataagtgct gtgaaagcat tgatagtgag ttatattgaa
     2821 acaacatgat taaaagtgaa taagaacaag gccatgattt aaaaatcgtg ttttacaata
     2881 ccgtgaatgt ctgagaaagc aatggagtgt atgtttttaa aagtgacatt atttcggtta
     2941 aagcgttgtt actactctat tgttgaagct tctatcgtta agtgtgacag tttacttctt
     3001 agtatatatg ttgagtgatg ttgaataatg acgctgacat cagtccagtt tggcaagata
     3061 ttttgaaaaa gcccgatatc tctaaaatag agatgtcggg ctttttgcat gctttaatat
     3121 tcaatattag gtgctttgtt gacgtgttct tgataacgtt ttaaagcaac gaaagctgca
     3181 gtgagtacag ttgcaacgac taataatttt ttcatgatag caactccttt actcgtagta
     3241 gtttaattct aagtcttttg aagtttgttg acgtattttt ctcattaaat caacatcttc
     3301 aattaatgat ttaccataag aaggaatcat ttcttgtaat ttaggtgtcc attcaggtac
     3361 gtattcagca aagttgcgtt ctaatacttc aagtgccaca gacactgatg tagaagcccc
     3421 tggtgattca cctaataaag caataacagt atggtcttgt gagtttacta cttctgtacc
     3481 gaattggatg taacctttac cgtattcttc agtatcttta atcacttgta cacgtttacc
     3541 agcagtatat aattcccaat cttgatcttt agcttcaggg tagaatgtac gtaagtggtt
     3601 catacaacct tctttagtca ttaagatttg atcgattgag tatttaatta acggtaagtt
     3661 tttcaccgca gcggcaagta aagtagtaat attgtatggt tttacagatt tgaataaatc
     3721 taagttcgaa ccatttttca agaatttagg accgatgctt gcgaaaggtc cgaataataa
     3781 tgctttacgg ccgttgatat aacgtgtatc taagtgaggt acagtcattg gtggtgtacc
     3841 aggtggctct ttaccgtata ctttcacacc atgttcttcg ataacatctg ggtttgtaca
     3901 cattaagaat tgtcctgtaa ttgggaaacc acctaaatgt ttactttcag gaatacctgt
     3961 tttttgtaac aacggaatcg caccgccacc agcaccgatg aagatatagt ctgcaagttg
     4021 tacatgtgac tcacctgtat tgcggttgac cactgtaact tcccatttac catctttacg
     4081 acggttgaag tctctaactt catggttata atgtacatct gcatttttat gcgcttcgat
     4141 acttttagcc atcttacgag ttaattcacc gaagttaaca tcagtacctt cgtcgatttt
     4201 acttgcagcc atgatgtcgc tagcactacg accttgcatc atcaacggca tccattttct
     4261 catcacttca atatcttctg tatattcaat attgtcgaac attgggaaat ctttcatttt
     4321 attataacga tcttttaaga attgaacgtt attcttcccg cgtacgaagc taatgtgtgg
     4381 aagaggattg atgaaatctc ttggtgtatc aatgttttta cttttaacaa gatgactcca
     4441 aaattgtttt gagatttcga attcttcatt gatttctttt gctttttcga tgtcaattga
     4501 gccatcaggt tgtttcactg tatagttcaa ttcacaaagt gcagcatggc cagtaccagc
     4561 attatgacgc tcgtttgaac tttctacacc tggactgtct aggcgttcat ataatttaag
     4621 attccattct ggttctaaat ctttaatcat tgaagcgaaa gtcgtactta gcacaccggc
     4681 accaataatg acaatgtctt taggttctga ttgagttggc atacataatc acctttcgtt
     4741 tgttgtatat tgcggaatat gataggaaat caagtccttt gcatcacttc ttaattatta
     4801 tagtacattt tctatactaa aaaaaatgaa gcgcttgaat tgtgacagaa ttgataccac
     4861 tttgtaaaga ttgtaaacaa aatgaacaat catacttcgc
//
LOCUS       DANHOL010000153         4834 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.155, whole genome shotgun sequence.
ACCESSION   DANHOL010000153 DANHOL010000000
VERSION     DANHOL010000153.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 4834)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4834)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4834
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.155"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            <1..708
                     /locus_tag="PTC08_002055"
     CDS             <1..708
                     /locus_tag="PTC08_002055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683528.1"
                     /translation="MSRHVFAIPYIKFLSHAVIPLNQQWHYETETGIIHSFTDKNEMS
                     DVHYVRSFIIEDFDDSKDYHLNIEGVQQSFMIYLNQSDVGTVEGNEGYIEFDITHAVH
                     GEMNVIELVPTETMMSPQQNLFNDMYVLERANDRIVDYSVDVSQNARGDMSVRIQIQD
                     IEGAPLISYLLQNEEHDTFAKGVMDIDSSYHLVIPAHLVEQQGKHFTLFLETEDETIA
                     HYIGANGEHEPVNVKTV"
     gene            900..1220
                     /locus_tag="PTC08_002056"
     CDS             900..1220
                     /locus_tag="PTC08_002056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001831459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PadR family transcriptional regulator"
                     /protein_id="HDK5683529.1"
                     /translation="MNIQFKKGALEMIVLLIIKKEPQYGYSLVQNISKHMMIAEGTVY
                     PLLRRLVKESCLTTYYEPSMEGPARKYYELTRVGNQRLQQLKSEWHEFVSIVKIFIEE
                     SECE"
     gene            1217..1774
                     /locus_tag="PTC08_002057"
     CDS             1217..1774
                     /locus_tag="PTC08_002057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1700 domain-containing protein"
                     /protein_id="HDK5683530.1"
                     /translation="MTKVEYLNSLYQYLKGMPESEKRDIVAEYENHFIEGLRDGKSEQ
                     EIIGMLGAPKEMARAINAESAVNQAEESQKTSNITQALVTVIGLSVLNFILITGPLMI
                     ALGILFSIVLTSIAFLLTPFALVFKYYVLSEVILIEDVFAVMGWFGLGLILIVLLFFI
                     LKWSYIGFVKYLKWNVKLVKRGVSA"
     gene            1771..2586
                     /locus_tag="PTC08_002058"
     CDS             1771..2586
                     /locus_tag="PTC08_002058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4097 family beta strand repeat protein"
                     /protein_id="HDK5683531.1"
                     /translation="MKRALFIVFLIGCVMFVVGLAGTVYYTFFHDQRDHEITQKTYKT
                     DGIKKLALEIKGRDVTFVKGDTLKIKGDISNEDHFKVKKNGTQMNVSISSERRQPISI
                     HLNPLRPLDRKQLIITLPSSQVDQVALNGTDTTMTLDAFELAHLTLNLTRADLYMDDS
                     HIQQLATAMKDSALYTEHTDFKKMTAKVDASDVTLEDVSLDIPMSWEINNGIVDVNYK
                     GQLSNTAFHIDGDEGAVDLDGVEGLNNNQVGRGEHQVDIKVTNYGDATFSAYE"
     gene            2758..4092
                     /locus_tag="PTC08_002059"
     CDS             2758..4092
                     /locus_tag="PTC08_002059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaC family protein"
                     /protein_id="HDK5683532.1"
                     /translation="MSNELRSQKQYGALALLPLVIFLVLYIGVGLVFTMLGTKDAFQL
                     LPRHVAIFIAIVIAWTCYDRKTPITQKVKIFTENAGSSGIAELGLILLLAGGFASAAS
                     AMGGQEAMVNLGLSIIPPSLLIPGIFVMSAFVATSIGTSTGTQAAFIPIGVAVAQAAD
                     LNVAAAAAAVIAGAYFGDNLSIISDTTIAATTGVGAKMKDKFKANFLIALPAAIITFI
                     IYAIVGGTGHIKGDLSFNFIDVIPYLFVLIAAIAGMNVMLVLISGTVLTGIIGVARGN
                     IGVFEWTSKIGEGMEGTFSIFLIAFLISGLVALIRYYGGIDWIVETMKKRANGPKSAE
                     YAMSFLSGLLSAALVHNVVAIIISAPIAKELGQMYKIAPKRMASLLDIFAASALMVLP
                     HDSGMLMAEQFGHVSYFEVLKFSYYPLILILCAVISIHIGMFRKQKNNAVDE"
     gene            complement(4173..4781)
                     /locus_tag="PTC08_002060"
     CDS             complement(4173..4781)
                     /locus_tag="PTC08_002060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002482515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase"
                     /protein_id="HDK5683533.1"
                     /translation="MDFIHPPTIQTAQNLLGVQLIYEAPEITYSGYIVETEAYLGFKD
                     QAAHGYQGRRTPKVESLYQQGGTIYAHVMHRHLLINFVTQEQGIPEGVLIRAIQPEAG
                     IEMMQRNRGRQGYALTNGPGKLTAAMQIPRSIDGSQLNTGRLKIDTKNRKFPREIEIG
                     PRIGIPNKGDWTAAHLRYSVKGNPYVSHRRKSEMSPIEETWR"
BASE COUNT         1454 a          794 c         1071 g         1515 t
ORIGIN      
        1 atgagtcgtc atgtatttgc gataccatat atcaaatttt taagtcatgc ggtaatacct
       61 ttaaatcaac aatggcacta tgaaactgaa actggcatca tacattcatt tacggataaa
      121 aatgaaatgt cggatgtgca ctatgtacgt tcttttatta ttgaagattt tgatgacagt
      181 aaagattatc atttaaatat tgaaggggta cagcaatctt ttatgattta tttgaatcaa
      241 agtgatgttg gaacggtaga gggcaatgaa gggtatatcg agtttgatat aacacatgct
      301 gttcatggtg aaatgaatgt cattgaactg gtgccaacag aaacgatgat gtccccacaa
      361 caaaatctgt ttaacgatat gtacgtactc gaaagggcga acgatcgaat tgtggattat
      421 tctgtcgatg tgagccaaaa tgcgcgtggt gatatgagtg tgcgtattca aattcaagat
      481 atcgaggggg ccccattaat cagctattta ttgcaaaacg aagaacacga cacatttgct
      541 aaaggggtaa tggacattga tagcagttac catttagtga ttccggcaca tttagtagag
      601 caacaaggga aacatttcac gttgttttta gagacagaag atgaaacgat tgcacattat
      661 attggagcga atggcgaaca tgagccggtc aatgtcaaaa cagtttaaaa taccatttga
      721 aagcgtatct aggtgatgaa agcccctggt acgcattttt tattggtttt gagcagagac
      781 ctatagccgt tcaaatgaat tttacacagt accttgcaat gtataatagt gtttggtatt
      841 ttatatttga gtattataca ttgattagta ctgattaatg tattgatgga ggtgcaacaa
      901 tgaacatcca attcaaaaaa ggtgcattag aaatgattgt actgttgatt attaaaaagg
      961 agccacagta tggctactca ctcgtacaaa atatttctaa gcatatgatg attgctgaag
     1021 gtacggttta tccgttatta cgtcgacttg ttaaagaaag ttgtttgacg acctattacg
     1081 aaccatcaat ggaaggacct gcgcgtaaat attatgaact cacacgtgta gggaatcagc
     1141 ggttacaaca attgaaatca gaatggcatg aatttgtcag tatcgtgaaa atttttatcg
     1201 aggagagtga atgcgaatga cgaaagtaga atatttgaat agcctttatc aatacttaaa
     1261 gggcatgcca gaatcagaaa aacgtgacat tgtggctgaa tatgaaaatc attttattga
     1321 aggcttacgt gatggtaaat ctgaacaaga aattattggg atgttaggtg caccgaaaga
     1381 gatggcacgt gctatcaatg cagaaagtgc ggtgaaccag gctgaagaga gtcaaaaaac
     1441 atcgaatatc acacaagccc ttgtcactgt gataggactc agtgtactga attttatatt
     1501 aattacaggt ccattgatga ttgccctcgg tatccttttc agtatcgtcc tgacgagcat
     1561 tgcatttctc ctgacaccat tcgccttagt gtttaaatat tacgttttat cagaagtcat
     1621 cctcattgaa gatgtgtttg cggtgatggg ttggttcgga ttgggactca tcttgattgt
     1681 gttattattt tttatcctca aatggagcta tatcggattt gtaaaatatt tgaaatggaa
     1741 cgttaaactg gtgaaaagag gtgtaagtgc atgaaacgtg cattgttcat tgtgttttta
     1801 atcggatgtg tgatgtttgt agttggactt gctggcacgg tttattacac attttttcat
     1861 gaccaacgag atcatgagat aacacaaaaa acttataaga cggatggcat aaaaaagtta
     1921 gcgctagaaa taaaaggtag agatgtaaca tttgtcaaag gtgatacatt gaaaattaaa
     1981 ggtgacatct caaatgaaga tcactttaaa gttaagaaaa acgggactca aatgaacgtc
     2041 tccatttcta gtgagagacg tcaacccatc tcgattcatc tcaatccgct tcgtccttta
     2101 gatagaaagc aactcatcat tacgttgcct agttcacaag tggatcaagt ggcgttaaat
     2161 gggacagata caactatgac tttagatgcg tttgaactag cgcatttaac tttgaactta
     2221 acaagagcag atttgtatat ggatgacagt catattcaac aactcgctac ggctatgaaa
     2281 gacagtgctt tatatacgga acatactgac tttaaaaaaa tgactgctaa agtagatgct
     2341 agtgatgtta ctttagagga tgtctcacta gatattccga tgtcttggga gattaataat
     2401 ggtattgtgg atgtcaatta taagggtcaa ctttcgaata cagcctttca tatcgatggg
     2461 gatgaaggag cggtcgactt agatggtgtt gaaggactga acaataatca agtcggtcgt
     2521 ggtgagcatc aagtcgatat taaagttaca aattatggtg atgcgacatt ttcagcatat
     2581 gaatagctgt tcatacattg gaaaagatga aacgatatga tgatttataa aagtaaaaag
     2641 cagatgacta tgcataaaaa acgtatctat tcataaaaaa ataatacgcg agacttgtca
     2701 aagtgagata aaagtgtata atccttatca tgataataag atattgaggg gaaagacatg
     2761 tctaatgaat taagaagtca aaaacaatat ggtgctctcg cgttattacc attagtcatc
     2821 tttttagtat tgtacattgg tgtggggctt gtgtttacaa tgctcggcac aaaagatgca
     2881 tttcaactat taccgcgaca tgtggcgatt tttattgcaa ttgtcattgc atggacgtgc
     2941 tacgatcgta aaacgcccat cacgcaaaaa gttaaaatat ttacggaaaa tgcaggttct
     3001 tcgggtattg cagaacttgg cctgatttta ctattagcag gtggttttgc tagcgcggcg
     3061 tcagcaatgg gtggtcaaga ggcgatggtc aacttgggct tatctattat tccgccaagt
     3121 ttgttgatcc ctggtatttt tgtgatgagt gctttcgtcg caacatcaat agggacatca
     3181 acgggtacac aagccgcttt tattccgatt ggggttgctg ttgctcaagc ggcagactta
     3241 aatgtagctg cggcggctgc ggcggtcatt gcaggggctt acttcggaga taacttatct
     3301 attatttctg atacgacaat tgcagcaaca acaggtgtag gtgcgaagat gaaagataag
     3361 tttaaagcga attttcttat cgcactgcca gcagcgatca tcacttttat tatttatgct
     3421 attgttggtg gcacagggca tattaaaggt gatttaagtt ttaattttat tgatgtgatt
     3481 ccatatttat tcgtcctcat tgcggctatt gctggaatga atgtcatgct cgtgctcatt
     3541 tcggggacgg ttttaacagg tattattggt gtcgcacgag gaaatatagg ggtctttgag
     3601 tggacttcta aaattgggga aggaatggaa ggcacgttct ccatttttct tatcgctttc
     3661 ttaatttcag gtttagtcgc tttaattcga tactatggcg gtattgactg gattgtagaa
     3721 acaatgaaaa aacgtgcaaa tgggccgaaa agtgctgaat atgcgatgag ctttttatcg
     3781 ggactattgt ctgcagcttt agtgcataat gtggtcgcaa ttattatttc agcacctatc
     3841 gctaaagaac tcggtcaaat gtataaaatt gcgccgaaaa gaatggccag cttgttagac
     3901 atttttgctg cgagtgcatt gatggtgttg ccacatgaca gcgggatgtt aatggctgaa
     3961 cagttcggcc atgtttctta ttttgaagta ttgaagtttt cgtattatcc actcatttta
     4021 attttatgtg cggtcatttc aattcatatt ggtatgttta gaaaacaaaa gaacaatgct
     4081 gttgatgaat aagcataacg gtgtcgtgtc gttgtaatga tgcgcatagt aagaggttag
     4141 gacattttgt gtcttagcct cttctttaaa ttttaccgcc acgtctcttc aataggcgac
     4201 atctcacttt ttcgtcgatg tgatacatac gggttccctt taacactata acgtaaatgg
     4261 gcggctgtcc aatcgccttt attcggaatg ccgatacgtg gtccaatttc gatttctcgc
     4321 ggaaactttc tatttttcgt atcaatcttt aaacgccccg tattcaattg actgccatca
     4381 atagaacgag gaatttgcat tgcagcggtt aactttcctg ggccattcgt taacgcgtag
     4441 ccttgtcgac cgcgattacg ttgcatcatt tcaatgcctg cttcaggttg aatagcacgg
     4501 ataagtacgc cttctggaat accttgttct tgtgtaacaa aattgatgag caagtgacgg
     4561 tgcatgacat gtgcataaat ggtcccgccc tgttgataaa gtgattcgac ttttggtgtg
     4621 cgacgtccct gatagccatg tgcagcttga tctttaaaac ctaaataggc ttctgtttca
     4681 acaatatagc cactgtaggt gatttctggt gcttcataaa tcaattgaac cccaagtaag
     4741 ttttgagcgg tttgaattgt cggtgggtga ataaaatcca tagttgcctc cattttattt
     4801 aattatatga tgctatttta ccggaaatcg ctat
//
LOCUS       DANHOL010000154         4806 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.156, whole genome shotgun sequence.
ACCESSION   DANHOL010000154 DANHOL010000000
VERSION     DANHOL010000154.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 4806)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4806)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4806
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.156"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            260..538
                     /locus_tag="PTC08_002061"
     CDS             260..538
                     /locus_tag="PTC08_002061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001806604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683534.1"
                     /translation="MKRNKTSFRGLVFKEKENGYAVQIHNTHVGYSKSKKIAALMYNK
                     SATYLYDNDAILNEVPITDELEEFISNWEIPKKIKALKRNEEVVNNGD"
     gene            659..1882
                     /locus_tag="PTC08_002062"
     CDS             659..1882
                     /locus_tag="PTC08_002062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HDK5683535.1"
                     /translation="MSEVARRATDKGNRVLFCVHRIELVNQIKNTFRLNNVDMDLCHV
                     GMVQTIKNRVKRGAEPEPSIILVDEAHHSLAKTYLDIFEAFPDAYVFGFSATPCRLNG
                     RGFTDVFTDLIPGKTVKWLIDNKRLAPFKYYSVNLLDANQLKTASTGDYRSDSITNAM
                     KTTIYGDAVENYKKFADGKKTIIYTHNVESSKQVAEKFNQSGYKALQVDGKTPKSERD
                     EAMQAFRNNEINILVNAELYGEGVDVPDCHCVILLRPTKSLTLFIQQTMRAMRYQENK
                     TAIIIDHVGNYLTHGLPTTEHDWYEHFKGVDKKKREENTISAKQCPECFSVVASTHSE
                     CPYCGHEWKSEEQALQQDSDTELEEITEETFIKLNFKEPKDCKSMKELYELAESLNYK
                     PGWAYFQGKHLGLIK"
     gene            1900..2403
                     /locus_tag="PTC08_002063"
     CDS             1900..2403
                     /locus_tag="PTC08_002063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002436468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF669 domain-containing protein"
                     /protein_id="HDK5683536.1"
                     /translation="MTNFTLNMQDTFDGGIQDGTYEAVITKCEENVTPGGAEHVDMRL
                     TIRNDVNQKYKNNVIFHKIWKAKATGKYDMRFFNTIGAAAQLQQGKAYSSIEELFNDY
                     LGKPVKVTVKNETSEYNGKTYENLNVKRWDKTALPEMTHQFKTTEDGSNPFAGGEINV
                     EDDDLPF"
     gene            2432..4744
                     /locus_tag="PTC08_002064"
     CDS             2432..4744
                     /locus_tag="PTC08_002064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002436514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HDK5683537.1"
                     /translation="MYDNIPYELKELDRWCCFRIEQGTNGRKTKRPYNPLTNQMAKSN
                     DESTWVSFEDAASLSINYDGIGFFFKEPYIGVDLDNVGQEIIEYLENEDVDNIVSEFV
                     EILETYAEISPSGNGIHLIVKGELPEKGRRRGNVEIYNHGRFFTMTGKHIGGYNRVNE
                     DEMNKLSYLHSKYILKPDTEKKIINTNKGFGNDLSIEQIIDIAKKSKNGLRFTTLYEG
                     DWSQFYSSQSEADLAFCNDLAFWTARDPQKMDAIFRKSVLYREKWDEKRGEDTYGNIT
                     ILRAIESCSNEFIPEVSPDNDFQIYVMEQDVKPAKKDKRYSYDDTGNAERLRDYYGDY
                     IRYNYTANAWFYYDGKRWKKDDAGKMKHLVDKVVNKLKDEKLYISDDVDEEDMKKYRY
                     RHWKDSRNHSKKVNMMKECQHLLPIHHHNFDTDFTLFNTQNGYIDLTTGLLHDHEKNK
                     FFTKMSNTEYTDNADCPIWLDFLNDIFLGRQELIDYIQRAVGYSLSGFTSEQVLFVLY
                     GNGRNGKSVFLDIMNEVFGDYATNIRPQAIMAGKNNSDASPEIAKLDGARFVTTTEPN
                     EGDRFDEGLLKQLTGGDKVSARRLYENEFEFTPQLKLWMATNHKPYVRGTDEGIWRRF
                     VIIPFEKQIPLHEVDKDLTQKIKKELPAIIKWCVDGYLEWQRIGLAEPKIIREQREEY
                     RTEMDPIEMFLDECCELNPLEKINSSELYSAYSYWAKENHQYLMNNTKFGKEMIKKFE
                     RKKYQGRKFYYGLNLTTEAKQEQNKFMLNI"
BASE COUNT         1763 a          790 c          977 g         1276 t
ORIGIN      
        1 tcctaatcga tatacgagac caagaattaa tagccctaca ttttacaaag gggtgaggat
       61 tagatatggc aagtattatg ctgaaataag cataaatggc aaaaaaatac ctttaggtgc
      121 attcgaaaat ttagatgatg cagcaaaggc atataatgac ggtgttgata aatattggaa
      181 cggcttgggt tttaaaaatg tcatcggaat agataataga attaaaaaaa cagattataa
      241 aacaataaaa aaccaacaaa ttaaaagaaa taaaacttca tttagagggt tggtatttaa
      301 agaaaaagaa aatggctatg cagttcaaat acacaacaca cacgttggat attctaaatc
      361 taaaaaaata gctgctttaa tgtacaacaa gagtgcaact tatctttatg ataatgacgc
      421 aattctaaac gaagtaccta ttacagatga actcgaagaa ttcatatcta actgggaaat
      481 acctaaaaaa attaaagcat taaagcgcaa cgaggaggtg gtcaacaatg gcgactaact
      541 tccaactgcg cgattaccaa atcgaattaa ttaatggatt atatgattcg attgcaaaag
      601 gtaatcaaaa cattatggta cagtcgcctg catagcagga agcggtaaat cagtcacgat
      661 gagtgaagtg gcaagacgtg caaccgataa aggtaacaga gtgttgtttt gcgtccacag
      721 aatagagtta gtgaaccaaa tcaaaaacac gtttcgatta aacaatgttg acatggatct
      781 atgtcatgtc ggaatggttc aaacaatcaa gaaccgtgtt aaacgtggtg cagaacctga
      841 accatcaatc atcttagttg acgaagcgca ccactcatta gcaaaaacgt atctcgatat
      901 attcgaggcg tttcccgacg cgtatgtgtt tggcttcagc gcaacaccat gcagattaaa
      961 cggtagaggt tttacagacg tgttcactga tttaatacct ggtaaaacag ttaaatggtt
     1021 aatcgacaac aaacgattag caccgtttaa atattattcg gtgaatttac tcgatgctaa
     1081 tcagcttaaa acagcaagca caggtgatta tcgtagtgat tccattacaa atgcgatgaa
     1141 aacgacaatt tatggtgatg ccgttgaaaa ctataagaag tttgctgacg gtaagaaaac
     1201 tattatctac actcacaatg ttgaatcgag taagcaagtg gcagaaaaat tcaatcagtc
     1261 aggttataaa gccttacaag ttgatggtaa aactcctaaa tctgaacgtg atgaagctat
     1321 gcaagcgttc aggaacaacg agataaacat actcgtcaac gctgaattgt atggcgaggg
     1381 tgtagacgtg ccagattgtc actgtgtgat actgttacgc cctactaaat cgctgacgtt
     1441 attcattcag cagactatgc gtgctatgcg gtaccaggaa aacaagacag caatcattat
     1501 tgatcacgtt ggtaattacc ttacacatgg gttacctaca accgagcatg actggtatga
     1561 gcattttaag ggtgtcgata agaagaaacg cgaggaaaat actatttcag caaaacaatg
     1621 ccctgaatgc tttagtgtag tagcttctac acattcagaa tgtccttatt gtgggcatga
     1681 atggaaatca gaagagcaag cattacaaca agattcagac acagaattag aagaaattac
     1741 agaagaaaca tttatcaaat taaattttaa agagcctaaa gattgcaaga gtatgaaaga
     1801 gttgtacgaa ctcgccgaat cacttaacta taagcctggt tgggcatact ttcaaggcaa
     1861 acatttagga ctaatcaaat aaaaaggaga ttttaaatta tgacaaactt tactttaaac
     1921 atgcaagaca cttttgacgg aggaattcaa gatggcacat acgaagcggt catcacgaag
     1981 tgtgaggaaa acgtaacgcc gggcggtgca gaacacgtag acatgcgctt aactattcgt
     2041 aacgacgtaa atcaaaaata taaaaataac gttatcttcc ataaaatttg gaaagcaaaa
     2101 gcaactggta aatatgacat gcgattcttt aacacaatcg gtgcagcagc acaattgcaa
     2161 caaggtaagg catattcatc aatcgaagag ctattcaatg actacttagg caaaccagtt
     2221 aaagtaacgg ttaaaaacga aacatcagaa tacaacggca aaacttatga gaatttaaat
     2281 gttaagcgtt gggataaaac tgcattacct gaaatgacac atcaatttaa aaccactgaa
     2341 gacggcagta atccttttgc gggtggagaa attaacgttg aagacgatga cttaccattt
     2401 taattcgtaa ataaaaacaa ggagggttat tatgtacgac aatatacctt acgaattaaa
     2461 agaattagat cgttggtgtt gcttcaggat tgagcagggt acaaacgggc gtaaaacaaa
     2521 acgcccttat aaccctctta ccaaccaaat ggcaaaatcg aacgacgaat caacatgggt
     2581 gtctttcgaa gatgctgcaa gtctatctat taactatgat ggtattggtt ttttctttaa
     2641 agaaccttat atcggtgttg acttagataa tgtgggtcaa gagattattg aatatttaga
     2701 aaatgaagat gtcgataata tcgtttctga atttgttgaa atactcgaaa cctatgcaga
     2761 aataagtccg tccggcaatg gaattcactt gattgttaag ggagaattac ctgaaaaagg
     2821 ccgcagacgt ggcaacgtcg aaatttacaa tcatggtcgc ttctttacta tgacaggcaa
     2881 acatattggt ggttataacc gtgttaatga agatgagatg aataaactat cgtacttaca
     2941 cagtaaatac attttgaaac ctgatacaga aaagaaaatt attaacacca acaagggatt
     3001 cggcaatgat ttatcgatag aacagattat cgatattgct aaaaaatcta aaaacggtct
     3061 acgttttacc acattgtatg agggggattg gtcacagttc tactcatcac aatcagaggc
     3121 agacttagcg ttttgcaacg atttagcgtt ttggactgca cgtgatccac agaagatgga
     3181 cgctattttc agaaaatcgg ttttatatcg tgagaagtgg gatgaaaaac gtggtgaaga
     3241 tacgtacgga aacatcacaa ttttaagagc aatcgaaagt tgcagtaacg agtttattcc
     3301 cgaagtttca cctgacaatg attttcaaat ttacgtcatg gaacaagacg tcaagcctgc
     3361 aaaaaaagac aaacgttatt cttacgatga tacaggtaac gctgaacgtt tgcgtgatta
     3421 ttatggtgat tacattagat acaactacac agcgaatgca tggttttatt atgacgggaa
     3481 gcgatggaaa aaagatgatg caggtaagat gaagcatctt gtggataaag ttgtgaataa
     3541 gttgaaagat gaaaagttgt acatcagtga tgatgttgat gaagaagata tgaagaaata
     3601 tcgatacagg cattggaaag attcacgcaa ccacagtaaa aaagtcaaca tgatgaaaga
     3661 atgtcagcat ttactgccga ttcatcatca caattttgat actgacttta ctttgtttaa
     3721 tacacaaaac ggctatatcg atttgacgac tggtttactg catgatcatg agaaaaacaa
     3781 attctttacg aaaatgagta acacagaata tacagataat gcagattgtc caatttggct
     3841 tgatttttta aatgacatat ttttaggtcg gcaagaatta attgattata tacaacgtgc
     3901 agtcggttac tcgttgtcag gtttcacatc agaacaagtg ttatttgttt tatacggtaa
     3961 tggccgaaat ggtaaatcag tatttttaga catcatgaat gaagtttttg gagactatgc
     4021 aacgaacatt cgaccacaag caatcatggc cggtaaaaat aattctgacg cttcaccgga
     4081 aatcgcaaaa ctcgacggtg ctcgattcgt tactactacg gaacctaacg agggcgaccg
     4141 attcgatgag ggactattaa aacaattaac aggtggcgac aaagtatcag cacgacgatt
     4201 atacgaaaac gaattcgagt ttacaccaca gttaaaactt tggatggcaa cgaatcataa
     4261 gccttacgta cgaggaactg acgagggaat ctggcgcaga tttgtcatca ttccttttga
     4321 aaagcaaata ccacttcatg aggttgataa ggatctaaca cagaaaatta aaaaggaact
     4381 gcctgcaatc atcaagtggt gcgttgatgg ttatcttgaa tggcagcgta tcggacttgc
     4441 tgaacctaaa atcatcagag agcagagaga agaatatcgt acggagatgg accctattga
     4501 aatgttttta gatgagtgtt gtgaattgaa tccattagaa aagataaatt cttctgaact
     4561 atattctgct tatagttatt gggcgaaaga aaatcatcag tatctaatga ataacacgaa
     4621 atttggcaaa gaaatgataa aaaaattcga aagaaaaaaa tatcaaggtc gcaaatttta
     4681 ttacggactt aatttaacaa cagaagcaaa gcaagagcaa aataaattta tgttgaatat
     4741 ttaggggagg cataagagat agttagggga tagtttctat taaaaaccct cccctttgat
     4801 aaaacc
//
LOCUS       DANHOL010000155         4595 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.157, whole genome shotgun sequence.
ACCESSION   DANHOL010000155 DANHOL010000000
VERSION     DANHOL010000155.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 4595)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4595)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4595
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.157"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            277..1467
                     /locus_tag="PTC08_002065"
     CDS             277..1467
                     /locus_tag="PTC08_002065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HDK5683538.1"
                     /translation="MKSKKLLIITQNFYPELGSAANRMKMLFKHFTKESVMTHVLTTQ
                     PSYPNHELFQDDSYFDDDVINRYENNRIIRMKMLCEKQNKNLIARLFYYIEQYLRVRY
                     FIFKHKNDFDYIYVTSPNIFIAWATLFMKKAKRPDYILEVRDLWPDSVNSIKGINLKL
                     TWPLLKRLEKIMYNRADKIVINNKGFREHIQQMLDKAVPIEFIPNSVSQEERFTEEKY
                     EDFRVIYTGNIGYAQDVDHLIELFSLLNDHKINVTAIVYGVKAPKFREAVQHLEFVTL
                     KHAMSRERCLQEISRHHVALSILNENDTFLNVLPGKIVDAIGVNTLPVTNIGGKMAED
                     INAFRIGFAEKKATPQILLEKIIAYRDNPSHFESQLVNVRRYRNQFLNWETNIKALIR
                     FLKE"
     gene            1473..2393
                     /locus_tag="PTC08_002066"
     CDS             1473..2393
                     /locus_tag="PTC08_002066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDK5683539.1"
                     /translation="MPEVQYNVICENVTKIYDLNRSRKDKLLSLFTFGKSYQFKPYYA
                     LKEVSFKVERGTSVGIIGLNGSGKSTLSNILGQVVMPTYGKVNTDGKPSLIAIGAGLN
                     PSFTGEENIRYKCLMHGMSTKEINDKFDEIVKFSELDEFIYQPLKSYSSGMKSRLGFS
                     IAIHTDPDILIVDEALSVGDETFSNKCIDRMKAFQKQGKTIFFVSHSASQIRKMCDKA
                     LWIHYGQMVVYDDVNVVIKRYNALVQKIKHMPKSEQVEYKKKKLQQQQVGHLDEVTIS
                     QKNDVSLMTHGLIGVTLIGWFVAMYFQLFG"
     gene            2413..3228
                     /locus_tag="PTC08_002067"
     CDS             2413..3228
                     /locus_tag="PTC08_002067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020220384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl transferase"
                     /protein_id="HDK5683540.1"
                     /translation="MIKLDFDTMTKEDLLKANNQKVKLIVDEIDFYIFINIKPNNQRL
                     LVHTNGAINIKKSQPPVFLRNSWRDDFDANCLFIDDRTIHDSEVNLGWGLGTKERHYV
                     NDYARISQKVSQLLNVEDNQVTYYGSSGGGFVSILLATLHNHSRAIVNNPQTYVHRYR
                     KKNVVDAYQVVFEDMEFEAVNKMYANRVSSTSLMKKCNRVPEILYVQNRLSDEDMENH
                     VIPFIRILDKYQLDSSKINFLLYNDKKSGHNPLPKDKTLELVNLFMKRQLNIY"
     gene            3276..>4595
                     /locus_tag="PTC08_002068"
     CDS             3276..>4595
                     /locus_tag="PTC08_002068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HDK5683541.1"
                     /translation="MKKVAMFVWNHFTNDARVNRECTALAEDGYDVDLIAINDPKNTD
                     IEAFEQREPHFRVHRVKRYPMLIQVYADYGKRFLIIIGGVSFTIAAGLFFINLKLMLG
                     YLAMLLAGMVILKVKKLRKWVVNGAIIARMIIKGYQQKADIYHSNDLNTLPQGIVCSK
                     LRLHPKPLVYDSHEVQTDRTGYNPERIKKIERFLLQFVDTMMVENQTRAQHNECLYGF
                     YPQPLYNYSVLYDIEQQPYYNLHEKLGLNQNEKILLYQGGLQQGRGLEKLIEAMPMIQ
                     EGVLVFVGGGKLTETLKAQAQQSEARDRIFFLDKVPFEKLPQITREAFVGFQVLQNVC
                     FNHYSASSNKLFEYIMAHVPVIACDFPEIKRVVEENEVGIATDTHSSQNIAAAVNHLL
                     QHPELYDRYRANTRRAKMIYNWQNEKQKLLNVYNTLDDNVSFIGKIQP"
BASE COUNT         1590 a          691 c          885 g         1429 t
ORIGIN      
        1 gcaaaatatt attcgaatgc ttttctttct cacacctatt ttttgggtgc ttgaggaaca
       61 acatggcatt ttagcaaagt tagcaagttt gaatcctttt gcatatctta ttggtgtgta
      121 tcgtacagca ttagttcact ctcaaacagc cgtttatggc acttggtctg atcatatcta
      181 tttttgggtc acaacgctat tacttattat aattggctca gtgattcaca tgaaatttag
      241 aaagagaatt ctagattata tataggggtt taaaatatga aatctaaaaa actcttaatc
      301 atcacacaaa atttttatcc cgaattaggt tcagcagcaa atcgtatgaa aatgttattt
      361 aagcatttca caaaagaaag tgtgatgaca catgtattaa caacgcaacc ttcatatccc
      421 aatcatgaat tgtttcaaga tgacagttat ttcgatgatg acgtcattaa tcggtatgaa
      481 aataacagaa ttattcgcat gaagatgttg tgtgaaaagc aaaataaaaa tctcattgca
      541 aggctatttt attatataga gcaatatttg agggttagat attttatttt taagcacaaa
      601 aatgattttg actatattta tgtaacaagt cctaatattt ttattgcgtg ggcaactttg
      661 tttatgaaaa aagcaaagag accggattat attctggaag tcagagattt atggccagat
      721 agtgtgaata gtataaaagg gatcaatctc aaattaactt ggccattgct caaacgatta
      781 gaaaagatta tgtataaccg tgcagataag attgtcataa ataataaggg ctttcgtgag
      841 catatccagc aaatgttgga taaggcggtt cccatagaat ttatacctaa ctcagtcagt
      901 caagaagaac gtttcacaga ggagaaatat gaagactttc gggtgatata tactggtaat
      961 atcggttatg cgcaagatgt tgatcattta attgaattgt tcagtttact taatgatcat
     1021 aaaattaacg ttaccgctat tgtttatggt gtgaaagcac cgaagttcag agaagcggtt
     1081 caacatttag aatttgttac gcttaaacat gcgatgagtc gagaacgatg tcttcaagaa
     1141 atatctagac accatgttgc tttgtcgatt ttaaatgaaa atgatacgtt tttaaatgtt
     1201 ttacctggaa aaattgtaga tgcgatagga gtcaatacgc tccctgtcac gaacataggt
     1261 ggcaaaatgg cagaagatat taatgctttc cgaattggtt ttgcagaaaa gaaagcgaca
     1321 ccccaaatat tattagaaaa aattatagcc tatcgagaca acccttcaca ctttgaatct
     1381 cagttagtta atgtcagacg ctatcgtaat caatttttaa actgggaaac gaatattaaa
     1441 gcattaatca ggttccttaa ggagtgaata gtatgccaga agtacaatat aatgtgatat
     1501 gtgaaaatgt cactaaaatt tatgatctga atcgtagtcg taaagacaaa ttactctctt
     1561 tattcacttt tggaaaatca tatcaattta aaccttatta tgcattgaaa gaagtgagct
     1621 tcaaagtgga acgaggtacg tcagttggga ttattggatt aaatggttct gggaagtcga
     1681 cactctcaaa tatattagga caagtggtga tgccaacata tggaaaagta aacacagatg
     1741 gaaaaccgtc attaattgca attggtgcgg gactcaaccc atcttttacg ggtgaagaaa
     1801 atattcgcta caaatgtctg atgcatggga tgtctactaa agaaatcaat gacaaatttg
     1861 atgaaatagt taaatttagt gaactggatg aattcattta ccaaccgctt aaatcatatt
     1921 caagtgggat gaagtcgaga ttaggttttt ctattgcaat tcataccgat cctgatattt
     1981 taattgtcga tgaggcatta tctgtcggtg atgaaacgtt ttcgaataag tgtattgata
     2041 gaatgaaagc atttcaaaag caaggaaaaa caatcttttt tgtttctcat tctgcaagtc
     2101 aaattagaaa gatgtgtgat aaagcacttt ggattcatta cggtcaaatg gtcgtatatg
     2161 atgatgtcaa tgttgtgatc aaacgttata atgcattagt tcaaaaaatt aaacatatgc
     2221 ctaagtcaga acaagtcgaa tacaagaaaa agaaattaca gcaacagcaa gtgggtcatc
     2281 ttgacgaagt gactatttct caaaaaaatg atgtatcgct aatgacacat ggattgattg
     2341 gtgtcacttt gataggttgg ttcgtagcaa tgtattttca attatttgga tagaaaatgg
     2401 taggtattct caatgattaa attagatttt gacacaatga ctaaagagga tttgttaaaa
     2461 gcaaataatc aaaaagttaa actcatcgta gacgaaatag acttttacat tttcataaat
     2521 ataaaaccga ataatcagcg tcttcttgtt catacaaatg gtgcgattaa tatcaaaaaa
     2581 tctcaaccgc ctgtattttt aagaaacagt tggagagatg attttgatgc aaattgtctg
     2641 tttattgatg atcgcacaat acatgacagt gaagtcaatt taggatgggg gttaggaacc
     2701 aaagagcggc actacgttaa tgattacgca cgaattagtc aaaaagtgag tcaactttta
     2761 aatgtcgagg ataatcaagt gacgtattat gggagctcag gcggtggatt tgtatctatt
     2821 ttgttagcca cgcttcacaa tcattcacgt gctatagtaa acaatccaca aacctatgta
     2881 catcgatata ggaaaaagaa tgtagtggat gcatatcaag ttgtttttga agatatggaa
     2941 tttgaagcgg ttaataaaat gtatgcaaat cgcgtctctt ccacaagcct tatgaaaaaa
     3001 tgtaatcgtg tacctgaaat actctatgtt caaaaccgtt taagtgatga agatatggaa
     3061 aatcatgtaa ttccttttat ccgaatttta gataaatatc aactggatag ttctaaaatt
     3121 aactttcttt tatataatga caagaaatcc ggacataatc cattacctaa agataaaact
     3181 ttggaattag tcaatttatt tatgaaaaga caattgaata tttattagta agtatatttt
     3241 tgactggaaa accataataa agaggagata ctgaagtgaa aaaagtagcg atgttcgtgt
     3301 ggaaccattt caccaatgat gcgcgggtca atcgagagtg tacggcattg gccgaagatg
     3361 gatatgatgt agatttaatt gctatcaatg atccgaaaaa caccgacatt gaagcatttg
     3421 aacaacgaga acctcatttt cgagtgcatc gtgtcaaacg ctatcctatg ttaatccaag
     3481 tctacgctga ttatggaaag cgatttttaa ttataatcgg gggtgtctca tttacgatag
     3541 cagcgggatt attttttatt aatttaaaat tgatgctcgg ttacttagcg atgttgcttg
     3601 ctggaatggt gatactcaaa gtaaaaaaat tacgaaaatg ggtcgtgaat ggtgcgatta
     3661 ttgcacgtat gattattaaa gggtatcagc aaaaagcaga tatctatcat tcgaatgatt
     3721 taaacacttt acctcaaggc attgtatgtt caaaattgcg cctccaccct aagccattag
     3781 tgtatgatag tcacgaggta caaactgatc ggacagggta taatcctgaa cgtattaaga
     3841 aaatagaacg ttttttactg caatttgttg atacgatgat ggtggaaaat cagacacgcg
     3901 cccaacataa cgagtgcctt tatggctttt atccgcaacc attatataat tattctgttt
     3961 tatacgatat tgaacaacaa ccttattaca acttgcacga aaaattgggt ctcaatcaaa
     4021 atgaaaaaat attgctctat caaggtggct tacaacaagg tcgtggtctg gagaaactta
     4081 ttgaagccat gccgatgatt caagaagggg ttctcgtgtt tgtgggcggt ggcaaattaa
     4141 cagaaacact taaagcacag gcccaacagt ctgaagcgcg agatcgaatt ttctttttag
     4201 ataaagtacc atttgaaaag ctaccgcaaa ttactagaga agcatttgtt ggtttccaag
     4261 ttctgcaaaa tgtgtgcttt aatcattatt ctgcgagttc taataaattg tttgaatata
     4321 tcatggcaca tgttccggtc attgcttgtg acttccctga aatcaaacgt gtcgtagaag
     4381 aaaatgaagt tggaatcgct acagatacgc atagtagtca aaatattgcg gctgctgtga
     4441 atcatttatt acaacatcct gaattgtatg accgttaccg tgcgaatacg agacgtgcga
     4501 aaatgattta taattggcaa aatgaaaaac aaaaattatt aaatgtgtac aatacacttg
     4561 atgataacgt ttcatttata gggaaaatac agcct
//
LOCUS       DANHOL010000156         4578 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.158, whole genome shotgun sequence.
ACCESSION   DANHOL010000156 DANHOL010000000
VERSION     DANHOL010000156.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 4578)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4578)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4578
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.158"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            64..705
                     /locus_tag="PTC08_002069"
     CDS             64..705
                     /locus_tag="PTC08_002069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thermonuclease family protein"
                     /protein_id="HDK5683542.1"
                     /translation="MNRETKWYQNWKSGLTLLFVLTVVAFAATCFTNLENALAATGKS
                     TVTSSKAAQPGTTQKFPVELVKAVDGDTAKLKYQGKTETFRFLLIDTPETKHPRLGKQ
                     PFGQEASDRTAKLLKNANKIEVEFDVGRKQDKYHRYLAYIYVDGKMVNNILVKEGLAK
                     VDYVYPPNTRYLSQLEKSQKAAKKAKLGIWSLNSAFEDEISENDTANIGSLAS"
     gene            complement(997..1737)
                     /locus_tag="PTC08_002070"
     CDS             complement(997..1737)
                     /locus_tag="PTC08_002070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HDK5683543.1"
                     /translation="MFTQPKLIIFDLDNTLYAFDALWQEANKATFESYEQFKGMDYDE
                     FLPLYQKYDQHFWKQHDSGLISLDELRQLRLIETLKRYEIDVTYEEAQAYFERFLSLL
                     LSKITVNEKMNALLNDLKAHVEIAILTNGKLTEQRTKIENLQLNTIFNDNIFISEVMG
                     VEKPDAQAFLKVTDELNIRPEETLMVGDSWTNDVKGSINVGMSVIWFNPSQTEDRHLD
                     NHQIQIFTGEIEQLLEKLISMMEADCHF"
     gene            complement(1816..2058)
                     /locus_tag="PTC08_002071"
     CDS             complement(1816..2058)
                     /locus_tag="PTC08_002071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683544.1"
                     /translation="MLTLIFISKSEDSVTYHFYPENRFEAAPGHITVRLSDLKCFKAK
                     KADPDENIWYLEHALTRVREHIKENHFPESEVVAWY"
     gene            complement(2216..3508)
                     /locus_tag="PTC08_002072"
     CDS             complement(2216..3508)
                     /locus_tag="PTC08_002072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDK5683545.1"
                     /translation="MQKILDKLNFKDRKTLIGFLSVVTAGQLIYSSFEAFKGTFYNLL
                     LEVLNVSNAELGAIFGLIGISIFFYIPGGWINNRFSIKSILIVGLLIRFITISVIIFF
                     SPTFQVLKIIAIIWGIVDSFFWPAVLNGVIFFTDQSKRGMGFGLLESVRRAEEMLMNL
                     LIVGIMSLVSGIVVFKGGMLAYNLLIIPLILLIIKYVPKNGIAAMDEEEKTEITGNKS
                     LEALKGLFYVLLKPKVWLASISAMSIYWGYIILIYSVPYLQKTFDLSTTQTALFGIFN
                     TGLMGVLMGVSAGIISDYVFKSSSKMIFAALLLSSIILLGVVFIKGSLFVSMALLIAF
                     SVTTFLAKSVILAPIAEFDIPKKYAGSAMSVGSFAAYAPIFWVYTMNGKLLDAHQDNV
                     VEAYRIIFEIGIIVAFLGSVCTLILLMLNRKSSRQVTE"
     gene            complement(3539..4285)
                     /locus_tag="PTC08_002073"
     CDS             complement(3539..4285)
                     /locus_tag="PTC08_002073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphoryl diester phosphodiesterase"
                     /protein_id="HDK5683546.1"
                     /translation="MTIIFAHRGLSSKAPENTVTAFDLARKVEGVKWLELDVAITKDE
                     QLIIFHDDDLDRTTDTTGEVSETLYEKIEHASSGEWFGPEFKEERVLTFEQLIDFANR
                     YQLNLNIELKGVTGPNGSYLSERMIQLFKEQIKQLDSNIEVLISSFNFALLKLAEQHV
                     PQYTRAVLFERCAFYPDWRTIVDFCGSSIVHLEDINLTRDVVQDIKSSGYTLNVWTVN
                     DKDRANILFNWGVDGIFTDCADDLIHLQKA"
BASE COUNT         1528 a          905 c          699 g         1446 t
ORIGIN      
        1 tattaattaa gatttagtgg gttttagcgg aataaaatgg acattttaag gaggctaaaa
       61 tgcatgaata gagaaacaaa gtggtatcaa aattggaaga gtggtctcac acttttattt
      121 gttttaacgg ttgttgcgtt tgcggcgaca tgtttcacga acctagaaaa cgctctagca
      181 gctacgggaa aatctaccgt cacatcatct aaagcagcac aaccaggtac aacacaaaaa
      241 tttcctgtag aacttgtcaa agctgtcgac ggtgacacag caaaattaaa ataccaagga
      301 aagactgaaa catttcgctt tttattaatt gatacaccgg aaactaaaca tccacgtctc
      361 ggcaagcaac catttggtca agaagcttca gacagaacgg caaaactact taaaaatgca
      421 aacaaaatag aggtagaatt tgatgtaggt cgaaaacaag acaaatatca ccgttattta
      481 gcttatattt atgttgatgg taaaatggtc aacaacattt tagtgaagga aggccttgct
      541 aaagtagact atgtttaccc accgaatacg agatatttaa gtcaattaga gaaatcacag
      601 aaagcagcaa aaaaagcaaa attaggtata tggagcttga attctgcatt tgaagatgaa
      661 atcagcgaaa atgacacagc aaatattgga agtctggcgt cataagtagt aacagaaaaa
      721 aataacagaa gcagtacgat atgacattaa gattttccaa taggtgtatt catttatcat
      781 cttacatcta ttaatcacct tgactgtcat aaaaatcaac ttgtatataa tgtgaattcg
      841 tttttcataa gggtgatgag gttggaacat caatttgttc cagcctgttt ttcactcata
      901 gccaattctt taacgtcaat gccctctgtt tccttccctc ccattttcca ttattctcca
      961 tactatcacg acctaacatt gtatgaatca aatgttctaa aaatgacaat ccgcttccat
     1021 cattgatatg agcttttcca ataattgttc aatctcacca gtaaaaattt gaatttggtg
     1081 attatctaaa tgtcgatctt cagtttgtga gggattgaac caaatcacag acatgcctac
     1141 atttatgcta cctttaacat cattagtcca tgaatcccct accattaatg tttcttcagg
     1201 gcgaatattc aactcatcag tcacctttaa aaacgcttgt gcatccggtt tttcaacacc
     1261 cattacttca gaaataaaaa tattgtcatt aaaaatcgta ttcaactgca agttttcaat
     1321 ctttgtcctt tgttcagtta attttccatt cgttaaaatc gcaatttcaa catgtgcctt
     1381 taaatcgttc aacagcgcat tcattttttc attcaccgtt attttagaca ataataaact
     1441 taaaaatcgc tcaaaatacg cttgtgcctc ttcatacgtc acgtcgattt cataacgctt
     1501 taatgtttca attaatcgca gttgccttaa ttcgtctaaa ctgatcagcc cagaatcatg
     1561 ttgcttccaa aaatgttgat catatttttg ataaagtgga agaaattcat cataatccat
     1621 gcctttaaac tgttcatatg attcaaaagt tgctttattt gcctcttgcc ataatgcatc
     1681 aaacgcatat aacgtattat ctaaatcaaa aataatgagc ttaggttgtg tgaacatggt
     1741 tctactcctc gattttttcg tatttgatag ttcatgatag acataaaatt cagaaaatag
     1801 caaatagtac ttttcttaat accatgcaac aacttctgat tcaggaaagt gattttcttt
     1861 aatatgctct ctcactcttg taagtgcatg ctcaaggtac catatatttt catctggatc
     1921 tgcttttttc gctttaaaac attttaagtc agaaagtcgg actgtgatat gtcctggcgc
     1981 tgcttcaaaa cgattttctg gataaaaatg ataggtgaca ctgtcctcac ttttactgat
     2041 gaatattaat gttaacaatc aaatcactct ctttcaccat ttcctactgt gcatccacac
     2101 cgaatttgaa tagttcaaaa tataatgtga ttatatctca attttagtat aaacacactt
     2161 tccttcaaaa aaacgagtca gaataactcc aactcgttgt gtaatataat ttctcttatt
     2221 cagtaacttg acggcttgat ttgcgattta acatgagcaa aatcagtgta caaacactac
     2281 ctaaaaacgc gacgataata cctatttcaa aaataattct gtatgcttca acgacgttat
     2341 cttgatgggc atcgagcaat ttaccattca ttgtatacac ccagaagatc ggcgcataag
     2401 cagcgaacga accgacactc atcgcagaac cagcatattt tttaggaata tcgaattcag
     2461 caattggcgc aaggattaca cttttcgcca agaatgttgt aactgaaaat gcgattaaca
     2521 atgccatgct gacaaataga ctacctttaa taaatacaac acctagtaat atgatagatg
     2581 ataacaacaa tgctgcgaaa atcattttag atgatgattt gaacacatag tcagaaataa
     2641 tccctgctga cacacccatt agcacaccca ttaaacctgt gttgaaaatt ccgaatagtg
     2701 ccgtttgtgt tgttgataaa tcaaaagttt tctgtaaata tgggacactg taaatcaaaa
     2761 tgatataccc ccagtaaata gacatcgcac tgattgatgc tagccatact tttggtttca
     2821 ataacacata aaataaccct tttaatgcct ctaaagattt atttccagta atttcagttt
     2881 tttcttcttc atccatcgca gcaatcccgt ttttagggac atatttaata ataagtaaaa
     2941 tcaatggaat gataagcaag ttatatgcca acataccacc tttgaataca acaataccac
     3001 tgactaatga cataattccg acgatgagca agttcatgag catctcttct gcacggcgaa
     3061 cggattctaa tagaccaaat cccataccac gcttactttg atccgtaaaa aagatgacac
     3121 cattgagtac agctggccag aaaaatgagt caacaatccc ccaaataatc gcgataattt
     3181 tcagcacttg gaatgtcggg ctgaagaaaa taataacaga aattgtaata aaacgaatca
     3241 ataaaccaac aattaagatc gatttgatgg agaaacggtt attaatccaa cctcctggaa
     3301 tataaaagaa gatggagata ccaattaatc caaaaattgc acctaactcc gcattactca
     3361 cattcaaaac ttctaacaat aaattgtaga atgtcccttt aaaagcttca aaactagaat
     3421 agattaattg tcctgccgtc acaactgata aaaatccaat cagtgtttta cggtctttaa
     3481 aattgagttt atcaagtatt ttttgcatac tgatgttcct ttcattaagt tgttagttct
     3541 atgctttttg taaatgtatt aaatcgtctg cacagtccgt aaaaatgcca tctacgcccc
     3601 aattgaacag tatattcgca cggtctttat cattaactgt ccacacattt aaagtgtaac
     3661 cagatgattt aatatcttgt acgacatcac gcgttaaatt gatatcctcc aaatgaacga
     3721 tggaagaacc acaaaaatca acaatggtac gccaatctgg ataaaaagca cagcgttcaa
     3781 ataacaccgc cctcgtatac tgtggcacat gttgttctgc tagtttaagt aacgcaaagt
     3841 tgaaacttga gataagtact tcgatgttcg aatccaattg tttaatctgt tctttaaaca
     3901 attgaatcat gcgctcacta agatacgacc catttggacc tgtaacccct ttaagttcaa
     3961 tgttcaaatt cagttgatag cgattcgcaa agtcaataag ttgttcaaac gtcaacacac
     4021 gctcttcttt gaactcagga ccgaaccatt ctccagatga agcgtgttca attttttcat
     4081 ataacgtttc acttacttct cctgtcgtgt ccgttgtgcg atctaaatcg tcatcgtgaa
     4141 aaatgattaa ctgctcatct ttcgtaatcg ctacatccaa ctcgagccat ttcacgcctt
     4201 ctacttttcg agccaaatca aatgctgtca ctgtattttc tggtgcctta ctcgacaaac
     4261 ctctgtgtgc aaaaattatt gtcatatgga tgccctgact actcaaatct ttaatttctg
     4321 tctgtatgaa caacgacttt ttataaaatc acatttaaca tgcacctcat gcaactctat
     4381 tgagggtacg ctttgattta cacagtctat gaagttaaag ttactattta agtagttttc
     4441 ctttcttagt ttttatatca aagtttatgt ttttgattgt actaacgaaa acacaacatc
     4501 gcgctttctt catattgctt gtattttatc ttttcgacta tttcgactaa attgtagaaa
     4561 tgagaaatga cgacttgt
//
LOCUS       DANHOL010000157         4573 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.159, whole genome shotgun sequence.
ACCESSION   DANHOL010000157 DANHOL010000000
VERSION     DANHOL010000157.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 4573)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4573)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4573
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.159"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(<1..201)
                     /locus_tag="PTC08_002074"
     CDS             complement(<1..201)
                     /locus_tag="PTC08_002074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1033 family protein"
                     /protein_id="HDK5683547.1"
                     /translation="MWEVAKIRADYEGWWLFDDWPEHIIDSQKFETFEAFEQAYQHMI
                     QQAKTDYDNFIVGKHNIYAFYNN"
     gene            360..632
                     /locus_tag="PTC08_002075"
     CDS             360..632
                     /locus_tag="PTC08_002075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylphosphatase"
                     /protein_id="HDK5683548.1"
                     /translation="MKHYLIRVYGRVQGVGFRYFTERLALKYQIKGTVKNVEDYVEVH
                     AQGDDASLESFTQGVINGASPASRVETYTIDELEINEPYQNFRAIS"
     gene            645..1283
                     /locus_tag="PTC08_002076"
     CDS             645..1283
                     /locus_tag="PTC08_002076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-bromo-4-chloroindolyl phosphate hydrolysis
                     family protein"
                     /protein_id="HDK5683549.1"
                     /translation="MRYLLSRVWGAVVGVPVAVIAFFTSAILDFTFLIDFVIGIAGFV
                     VGYVPTQRLTSRAYLKEMNLTRKDYHYIMHQINLVQNKNKRILKSFIKVRSIQDFKLV
                     NDIYRLSRTINSAIKQRPFQFFNIESFYYSHIDNALNLIESYTRLAKMPLKADNERQM
                     LQQTRITLEEVKRTLIADLKQVNAQDYEQLDTEMRLNEMYQRRHVKEMENDS"
     gene            1280..2446
                     /locus_tag="PTC08_002077"
     CDS             1280..2446
                     /locus_tag="PTC08_002077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxic anion resistance protein"
                     /protein_id="HDK5683550.1"
                     /translation="MKSNDLTNATSTHPLDAYFNDYDHPKTATVTEVETKELNEHFND
                     QDRQKVQSLADQIEPLNHDSLLKFGSNAQTHLSHFSHQMLDEIQSKDVGPIGETLEQL
                     MKKLKEVNPDELSQQNDNFLKKLFKRSKNSMQQLFSRMQSVSAQVDRISIELDKNKAL
                     LVKDIQLLDGLYQQNKDYFDVLNLYIAAAEQKKTEIEQDVLPEMRQRVKAADDQMVVQ
                     DVADMEQFVDRLEKRIYDLKLSRQISLQSAPQIRMIQNVNQALAEKIQSSILTSIPLW
                     KNQMAIALTLQRQQKAATAQKQVTDTTNEILLRNSEMLRQNARVTAEENERGIVDIET
                     LKTTQDNIIQTIEETLQIQQEGREKRQQAEKDLLALESDLKARLTTAKDQRDRQ"
     gene            complement(2681..2896)
                     /locus_tag="PTC08_002078"
     CDS             complement(2681..2896)
                     /locus_tag="PTC08_002078"
                     /inference="COORDINATES: protein motif:HMM:NF014126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BCCT family transporter"
                     /protein_id="HDK5683551.1"
                     /translation="MIPILSVITMLLVGTFLIISDDSATFVLGMQTSHDSLTPTGRVK
                     VIGGLLLSLIAFALLLLNGGEGLGALQ"
     gene            complement(2912..3109)
                     /locus_tag="PTC08_002079"
     CDS             complement(2912..3109)
                     /locus_tag="PTC08_002079"
                     /inference="COORDINATES: protein motif:HMM:NF014126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BCCT family transporter"
                     /protein_id="HDK5683552.1"
                     /translation="MTFIVFLSLFLIFSLIGKLCLGKTDEPEFKTISWLAMLFSTGDG
                     SLFLRHHRTDDTRFNATECET"
     gene            complement(3253..4569)
                     /gene="brnQ"
                     /locus_tag="PTC08_002080"
     CDS             complement(3253..4569)
                     /gene="brnQ"
                     /locus_tag="PTC08_002080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011303123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid transport system II
                     carrier protein"
                     /protein_id="HDK5683553.1"
                     /translation="MLFAIFFGAGNLIFPPNLGLESGQFFWPSILAFVITGIGLPLMG
                     VMVGALDKQGYIGSINKIHPVFSVVFLVSIYLTIGPLFAIPRTASTSFEMTVTPIIHS
                     SSPVWLFVFSVIYFLIVLYLCLNPGKIVDRIGAILTPLLLITIIAMIIKGFVDFGGST
                     QNTANPEVYTSALGGFSKGFTEGYLTMDAIAAIAFSMIVVNAIKATGIKHANDIFKQT
                     AMAGIIAAIALAVIYISLGFIGNHIIIPEETMKKLVENDQNIGAYLLITMADTGFGSF
                     GKYLLGIIVALACLTTACGLIVSVSEYFNSILPKISYKVYVFIFTIISFILSNLGLNA
                     VIKLSIPVLLIVYPIAITTVMLILIARLVPTRPITQQMTVAVVTIESILSVINANGWA
                     KIGFINQLPLHEHSLEWFPIAVITMIIGYIIGAFMKNSDIIVYEKE"
BASE COUNT         1618 a          791 c          856 g         1308 t
ORIGIN      
        1 attattataa aatgcataaa tgttatgttt gccaacaata aaattgtcat aatccgtttt
       61 tgcttgttga atcatgtgtt gatacgcttg ttcaaatgct tcaaatgtct caaatttttg
      121 cgaatcaatg atgtgttctg gccaatcatc gaataaccac caaccttcat agtctgcacg
      181 aatcttagca acttcccaca taaccaacgt ccccctatat gtaaaaaaag tcttactaaa
      241 aaagatagta tctttaaatt taaaaagcaa gctaaaagac ctaaaaataa gagatatgaa
      301 acttaaatat tagtcttttg cactgaaaat acttataatt gagtagaggg gtgaaatgta
      361 tgaaacatta tttaatccga gtatacggac gtgttcaagg ggttggattt cgttatttca
      421 ctgaacgatt agctttgaag tatcaaatca aaggtacagt gaaaaatgtt gaagattatg
      481 tagaggtgca cgcacaaggc gatgacgcgt cacttgaatc ttttacacaa ggagtcatta
      541 atggcgcctc cccggcttca cgtgttgaaa cttatacaat agatgaactt gaaattaacg
      601 aaccatatca aaactttaga gcgatttcat aaaggaagat gaatatgagg tatttattat
      661 cgagggtttg gggtgccgta gttggagtac ctgttgcagt tatcgccttt tttacaagtg
      721 ccattttaga ttttacattt ttaatagatt ttgtcatcgg catcgcaggt tttgtagtcg
      781 gttatgtacc tactcagcgt ttgacgtcac gtgcctattt gaaagaaatg aatttgacac
      841 gtaaagacta tcactatatt atgcatcaaa ttaacttagt tcaaaataaa aataaacgta
      901 ttttaaagtc gtttattaaa gttagatcaa tacaagattt taagttagtg aatgatattt
      961 accgattatc gcgtacaatt aattcagcca ttaagcaacg accttttcag ttttttaata
     1021 ttgaaagctt ttattattca catattgata atgcgttgaa cttaattgaa agttatacgc
     1081 ggcttgctaa aatgccactt aaagcagaca acgagcggca aatgctacaa caaacacgga
     1141 ttactttaga agaagtgaag cgtacactca ttgcagattt aaagcaagtt aatgcgcaag
     1201 attatgagca gttagatact gaaatgcgac tcaatgaaat gtaccaaaga agacatgtta
     1261 aagaaatgga gaatgattca tgaagtcaaa tgatctcacg aatgcaacaa gtacacatcc
     1321 attagatgct tattttaatg attatgatca tccaaaaaca gcaacagtga cggaagtaga
     1381 aacaaaagaa ttaaacgaac attttaacga tcaagaccgt caaaaagttc aaagtttagc
     1441 agatcaaatc gaaccattaa atcatgatag cctattgaaa ttcggctcaa atgcacaaac
     1501 acatctttct catttttcgc atcaaatgtt agatgaaatt cagtcgaaag atgtgggacc
     1561 gattggtgag actttggaac agttgatgaa aaagttgaaa gaagtgaatc cggatgaact
     1621 ttctcagcaa aatgataatt tcctcaaaaa actattcaaa cgctccaaaa attcgatgca
     1681 acaacttttt tcgcgaatgc aatctgtgag cgcacaagtc gatcgtattt caatagaact
     1741 agataagaat aaagcattgt tagtgaaaga tattcaacta ttggatggct tgtatcaaca
     1801 aaataaagac tattttgatg tgttgaatct ttatattgca gctgcagaac aaaagaaaac
     1861 ggaaattgaa caagatgtgt taccagagat gcgtcagcga gtgaaagctg ctgatgacca
     1921 aatggtggtc caagatgttg cggatatgga gcagtttgtc gatcgtcttg aaaaacgaat
     1981 ttatgatttg aaattatcac gccaaatttc attacaatct gcaccgcaaa tccgaatgat
     2041 tcaaaatgta aaccaagcat tagctgaaaa aattcaaagt tcgattttaa caagtattcc
     2101 attgtggaaa aatcaaatgg cgattgcatt aacattgcaa cgtcaacaaa aggcagcgac
     2161 agcacaaaag caagttacgg atacgacgaa tgaaatttta ttacgtaatt ctgaaatgtt
     2221 acgtcaaaat gcgcgtgtta ctgcagaaga aaacgagcgt ggtatagtcg atattgaaac
     2281 attgaagacg acacaagata atattattca aacgattgaa gaaacattac aaattcaaca
     2341 agaaggtcgt gaaaagcgcc aacaggctga gaaagattta cttgcattag aatcagattt
     2401 aaaagcgcgt ttaactacag cgaaagacca gcgcgacaga cagtagagaa acataaaaac
     2461 aggctcggat attgtgttac cgagcctgtt tttatgtttc tttgcgatca agtttatcat
     2521 ttttagcttt tctcgattca acgatatatt cacgcatttt ctctttatct ggtatcagtg
     2581 ttaagctgag atgacgttgt tctaaatgag cgtctttata aaatgaaacg agcatcagta
     2641 taatgacgac gttaaagggt aacgctgaaa taatcgccgc tcattgtaat gcgcctaagc
     2701 cttctccacc atttaataat aataaagcga atgcgatcag tgagagcaat aagcccccaa
     2761 tgacttttac gcgtcctgta ggtgtcaaag aatcatgtga tgtttgcatg ccgagtacga
     2821 aagtggctga atcgtcagaa ataattaaaa atgtacctac gagtaacatg gtaatgacag
     2881 ataatatagg tatcatatcg cagcatttgc ttcaagtttc gcattcagtg gcgttaaatc
     2941 gagtgtcatc ggttcggtga tgccgtaaaa aaagagaccc atcccctgta ctgaataaca
     3001 tcgcgagcca agatatcgtt ttaaactccg gctcatcggt ctttcctaaa cacaacttcc
     3061 ctattagact aaaaataaga aagagactga gaaacacaat aaacgtcatt tacaaaccat
     3121 tgggcttaat tgaataggtc ttaagttagt gggacaaaaa tgtggtgatt acatattaaa
     3181 aagcaaagtt taaagaggta gcaaacaaga caagccacag aaatgtgact tgtcttgttc
     3241 atgatgttaa gcttattctt tttcgtacac gatgatatca gagtttttca taaatgcgcc
     3301 aatgatgtaa ccaataatca ttgtaatgac agcgattggg aaccactcta atgaatgttc
     3361 gtgtaatggc aattgattga taaaaccaat tttcgcccaa ccatttgcat tgatgacact
     3421 aagaatggat tcaatcgtta caactgcaac agtcatttgt tgcgtaatcg gacgtgtcgg
     3481 tacaaggcgt gcgattaaaa ttaacattac tgttgtaata gcgattggat aaacgatcaa
     3541 taatactgga attgaaagtt taatcactgc gtttaaacct aagttcgata aaataaagct
     3601 aatgattgta aagataaaga cataaacttt atatgaaatt ttcggtaaga tgctgttgaa
     3661 atattcactt actgacacga tcaaaccaca cgctgtcgtt aaacaagcta gtgctacgat
     3721 aataccgagt aaatatttac caaatgaacc aaagcctgta tctgccatcg taatgagcaa
     3781 gtaagcacca atgttttggt cattttcaac taattttttc attgtttctt cagggatgat
     3841 tatgtggtta ccaatgaagc ccaaagaaat gtaaatgact gctaaagcga tggcagcaat
     3901 gatacctgcc attgcagttt gtttgaaaat atcatttgcg tgtttaatgc ctgtcgcttt
     3961 aattgcattt acaacaatca ttgaaaacgc aattgccgca atcgcatcca tcgttaaata
     4021 gccttcagtg aaacctttag aaaagccacc taacgcagaa gtgtatactt cagggtttgc
     4081 agtgttttgt gtgctacctc caaaatctac aaatccttta ataatcatcg caataatcgt
     4141 gattaaaagc agtggtgtta aaatggcacc gatacggtca acgattttgc cagggttcaa
     4201 acataagtac aacacgatta agaaatagat cactgagaag acaaataacc aaacgggact
     4261 actcgaatga atgatcggtg tcactgtcat ctcgaaagac gttgatgctg tacgtggaat
     4321 ggcaaataag ggtccaatcg ttaaataaat cgaaactaaa aatacaactg agaaaacggg
     4381 gtgtattttg ttgatcgaac caatgtaacc ttgtttatct aaagcaccta ccatcacgcc
     4441 cattaatggt aaaccaatac ccgtaatgac aaaagctaaa attgacggcc aaaagaattg
     4501 tccactttct agtcctaaat ttggtgggaa aatcaagttc cctgcgccaa agaagatggc
     4561 aaataacata aac
//
LOCUS       DANHOL010000158         4549 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.160, whole genome shotgun sequence.
ACCESSION   DANHOL010000158 DANHOL010000000
VERSION     DANHOL010000158.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 4549)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4549)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4549
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.160"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            <1..3859
                     /locus_tag="PTC08_002081"
     CDS             <1..3859
                     /locus_tag="PTC08_002081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="YPDG domain-containing protein"
                     /protein_id="HDK5683554.1"
                     /translation="NKSRTKHFNFLSKRQNRYAIRHFSAGTVSVLVGAAFLLGVHTSD
                     ASAAEQDQTSEAKQNLFDASAIFGALTETNEKVAQVTPTEKNLSSVEEMRDKGATGNG
                     PSITSLQTVEQNNAVQPTATPINDTENSTEASMKEQSNDAQTTDESNNVTPKNNTDPE
                     ANNEISARNAKTTAYLTSETYTTATSTTDMPTQKQEYPSLENLTNQSQTNRAQPPTME
                     APKLAEGLDNLLKKSTFESMYVTTRNQFDKETASKTKAWPSDVVPENQVEILADAIQN
                     GYIKSVNDVTNKAHTLSGRAWMLDHGTPTTIANGLTPVPEGTKVYLRWIDQDGATSPI
                     YTAKTTSRLSAADGNQVGPGAYAFDLRTGWIDAKGKHHVYRAVKGQYYKIWINDFRTK
                     DGNIATMLRVAGGYVPGTYVDSVTYNNMGQFPLIGTNMQRTGIFMTTIPSEQYLISKH
                     YVKDTKGAAANPAVTIIENNFVSGKVWIETGAGDYVNSATGPNHNAKDVVASGYKVVM
                     SSLTDQGAKAYDAQVNRLPKKDRAEAARQLLIKHPEYIAATVEGITNEWGRYTLRFPK
                     GTFNKDHLYGYVLDFDGEIVKTYSGFTSPEFRRPNYNLTVTPQTAPYYRPIRRAWVNV
                     NFAVIEAPQSQIEIKEFDATSNPAHRGQTATIDIIGMPKTSLLTRVQWKDSSGSIVED
                     SGPVFTEEEAEHIAEFVIPSSAKSGEVYTVQLVVGNHIVASDSLIVHVNEEAATYHPI
                     YPSTTVESGQRVTIPAPKNMDGKPLLDGTTFEKGHHVPTWALVNGDGSITVKPGEKVA
                     EGEYDIPVIVTYPDGSKNTIFAPVTVEEKQPMASQYEPITTGVSKPFGNPVMPTDVTD
                     SIQVPNYPLEGQQPTVTVDDESQLPDGTTEGYKDIDVTVTYPDGTKDRVKVPVVTEQQ
                     LDSDKYDPVATGILKPFGTPTTEEDVIKLVEVPYYPEDKEQPKVIVTDPTTLPDGQTP
                     GKTDVDVTVTYPDGTTDHIQVPVWTNKQLDKDKYEPITLGVAKNYGEPTTASDVTGAV
                     KIPNFPTEGEQPVVTVIDPRQLSNVQKEGQMNVGVVVTYPDGTTDEINVPIKTTRPDD
                     KEGVHGSSSSSGSEQELNSPSNKVGSSQGSLPHFAEPRIAPANEDKQQSDSDNYNPTS
                     ESVTQANGVPATTDVTDPVEIPNYPTDGEQPEPVVSVNDDDQLSGGKVGVHTVTIRSD
                     LSRVMTVSKGHKTSVPNSVQEATDIVVQPHVETNHPADKQEVKQLPETGEDSKQLGIL
                     LDGFIAVVGGLLLLGRRRNSKKD"
     gene            4085..4366
                     /locus_tag="PTC08_002082"
     CDS             4085..4366
                     /locus_tag="PTC08_002082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683555.1"
                     /translation="MSYVVGISFTILILLTGFWFIIFNRHQPIIFFFPDKARTNILTG
                     RSFLVLSLVYFIIVIILPVRISTMLLLYIGLTVLDLIVMYILLKLEVIE"
     gene            4437..>4549
                     /locus_tag="PTC08_002083"
     CDS             4437..>4549
                     /locus_tag="PTC08_002083"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HDK5683556.1"
                     /translation="MKEQDYKILSLLYREKNLTRVAEKMFMSQPALTYRIK"
BASE COUNT         1617 a          827 c          928 g         1177 t
ORIGIN      
        1 gaataaatca agaactaaac attttaattt tttatcaaaa cgtcagaatc ggtatgctat
       61 tcgccacttt tcagctggta ctgtgtcagt gcttgtagga gcagctttct tgctaggtgt
      121 ccatacgagt gatgcatctg ctgcagaaca agatcaaaca tctgaagcaa agcaaaacct
      181 ctttgatgct tccgctattt ttggcgcttt aacagagacg aacgaaaagg tagcacaagt
      241 gacgcccaca gaaaaaaatc tttcatcagt tgaagaaatg agagataaag gcgcaactgg
      301 aaatggacca tcaataacat cactacaaac tgtagaacaa aataatgcag tacaacctac
      361 agcaacacct attaatgaca cagaaaattc aaccgaagcc tctatgaaag aacaatcgaa
      421 tgatgcacaa acgactgacg aaagtaacaa tgtcactccg aaaaataata ctgaccccga
      481 agcaaacaat gaaatatcag cgcgtaatgc aaaaacaaca gcatatttaa caagtgaaac
      541 ctatacaaca gcaacgtcta caacagatat gcctacacag aaacaagaat atccatcttt
      601 agaaaatcta acaaatcaat cgcaaacgaa cagggcacaa ccaccaacaa tggaagcacc
      661 caaactggca gaaggattag acaatctatt aaaaaaatca actttcgaaa gtatgtacgt
      721 gacaacaaga aatcaatttg acaaagagac ggcttctaaa acaaaagcat ggccgagtga
      781 tgttgttcca gaaaatcaag tagagatact tgctgatgca attcaaaatg gctatatcaa
      841 atctgtaaat gatgtgacca ataaagcaca tacgttatct ggacgtgcat ggatgttaga
      901 ccacggaaca ccaacgacaa tagctaatgg tttaacacct gttccagagg gcactaaagt
      961 ttatttgcgg tggatagatc aagatggtgc cacttcgcca atttatacag caaaaacgac
     1021 aagtagatta agcgctgcgg atggtaatca agtgggtcca ggtgcttatg ctttcgattt
     1081 acgcacaggt tggatagatg ctaaaggaaa acaccacgta tatagagcag taaagggtca
     1141 atattataaa atatggatca atgattttag aactaaagac ggtaatatcg ctacaatgtt
     1201 acgtgttgca ggaggatatg ttcccggaac gtacgtggat tctgtgacat acaacaatat
     1261 gggccaattt ccattaattg gtacaaatat gcaacgtaca ggtatcttta tgacaacgat
     1321 accttcagaa caatatttaa tatcaaaaca ttacgtgaaa gatacaaaag gtgctgcagc
     1381 aaatccagcc gtcacgataa ttgaaaataa ctttgtgagc ggcaaagttt ggatagaaac
     1441 aggtgctgga gattatgtga actcagcgac aggtccaaac cacaatgcga aagatgtcgt
     1501 tgcctctgga tacaaagtgg tcatgtcatc attaacagat caaggtgcta aagcctacga
     1561 tgcgcaagtc aatcgcttgc cgaagaaaga tcgagcagaa gcagcacgtc aattattaat
     1621 aaaacatcca gaatatatcg cagcaactgt agaagggata acgaatgagt gggggagata
     1681 tacattgcgt ttccctaaag gcacattcaa caaagaccat ctttacggtt acgtattgga
     1741 ttttgatggt gaaattgtaa aaacttattc aggctttact tcaccagagt tccggagacc
     1801 gaattataat ttgaccgtta caccgcaaac agctccctat tatagaccca ttcgacgtgc
     1861 atgggtcaat gttaattttg cggttattga agcaccacaa tctcaaatcg aaataaaaga
     1921 atttgatgca acctctaacc ctgcgcatcg tgggcaaaca gcaactattg atatcatagg
     1981 tatgcctaaa acttcattac ttacacgtgt acaatggaaa gattcatcgg gcagtattgt
     2041 tgaggatagt ggtcctgttt ttacggaaga agaggctgaa catatagcgg aatttgtaat
     2101 accatctagc gcaaaatcag gcgaagtgta tactgtacaa ctcgtggtag gtaatcatat
     2161 cgtagcttcg gactctctta ttgtacatgt caatgaagaa gcggcgacat atcatccgat
     2221 atacccatcg acaacagtag aatcaggtca aagagtaacg attccagcac ctaagaatat
     2281 ggatggcaaa cctttactag atggcacaac ttttgaaaaa ggtcatcacg taccaacttg
     2341 ggctttagtg aatggtgatg gctcgattac agtaaaacct ggagaaaaag tagcagaggg
     2401 tgagtatgat attccagtga ttgtgacata tccagatggt tctaaaaaca caatctttgc
     2461 acctgtgacc gttgaagaaa aacaaccaat ggcatcgcaa tatgagccaa taacaactgg
     2521 agtatcgaaa ccatttggaa acccagtaat gccaactgat gtaacagatt caattcaagt
     2581 accgaactat ccattggaag ggcaacaacc gacagtaaca gtggatgatg aaagtcaatt
     2641 accagatgga acaacagaag gttacaagga tatagatgta acagtgacat acccagacgg
     2701 aacaaaggat cgtgtcaaag ttccagtcgt aacggaacaa caattagata gtgataaata
     2761 tgatccggtc gcaacaggta tcttgaaacc gtttggtact ccaacaacag aggaagacgt
     2821 tataaaattg gtggaagttc catattatcc agaagataaa gagcagccta aagtcatagt
     2881 aactgatcca accactttgc cagatggaca aaccccaggt aaaacagatg tcgatgtaac
     2941 cgtgacatat ccagatggca caacagatca tattcaagtt ccagtttgga cgaataaaca
     3001 actagataaa gacaaatacg agccaatcac attaggagta gctaaaaatt atggtgagcc
     3061 aacaacagca agtgatgtaa caggggcggt taaaatacca aacttcccaa cagaaggcga
     3121 acaacctgta gtcacagtga ttgatcctag acaattgtca aatgttcaaa aagaaggtca
     3181 aatgaatgtg ggtgtggtag tcacatatcc ggatgggaca acagatgaaa ttaatgttcc
     3241 gatcaaaacg acccgtccag atgataaaga gggggtacat ggttcgagta gttcaagtgg
     3301 ttcagaacaa gaattgaata gtccatctaa caaagtaggg tcgtcccaag gtagtttacc
     3361 acattttgca gaacctcgta tcgcaccagc taatgaagat aagcaacaat cagatagcga
     3421 taactacaat ccaacaagtg aaagtgtgac gcaagcaaat ggcgtgcctg caacaactga
     3481 tgtgacagac ccagtggaaa ttcctaacta tccaacagac ggtgaacaac ctgaacctgt
     3541 agtttctgtg aacgatgacg atcaattatc aggtggtaaa gtgggtgtgc atactgtgac
     3601 aattagaagt gacttatcaa gagtgatgac ggtatctaaa ggtcacaaaa caagtgtgcc
     3661 aaatagtgta caagaagcaa cagatatcgt ggttcaacca catgttgaaa caaatcaccc
     3721 agcagacaaa caagaggtta agcaattacc agaaacaggt gaagatagca aacaattagg
     3781 tattttatta gatggattta ttgcggtcgt gggtggtttg cttttattgg gaagacgtcg
     3841 taactctaag aaagattaat cgatgcatct cgtatatcaa acgatgaagg cttgctctca
     3901 ttcatgaggt caggcctttt taaactaatt tatatcacct tgatgtttta aatgacaata
     3961 tatgcataag ttagtagttt tatgaaatat tgtttactta ttacacttat tttatttata
     4021 atagttttaa tagagattat ttcattcagc caaatagaga aaaagagaga ttggagtgta
     4081 tgaaatgagt tatgttgtag gtattagttt tacgattttg attttattaa cgggtttttg
     4141 gtttattatt tttaatcgtc atcaacctat tattttcttt tttccagaca aggcacgtac
     4201 caatatatta acaggaagat cttttctagt tttaagtctg gtttacttta tcattgtcat
     4261 tattttaccc gtacgtatct caaccatgtt gttactttac ataggtttga cggtgcttga
     4321 tttaattgtc atgtacatat tattgaaact agaagtgatt gaataatgag caatatgtga
     4381 gacggcgatg tgtgaaacaa ggtcgttttt tgtgaatttt aaggggtgtt gtatttatga
     4441 aagaacaaga ttataaaatt ctatctttac tttatcggga gaaaaattta acacgagtag
     4501 cagaaaaaat gtttatgtct caacctgctt taacctatcg tattaagaa
//
LOCUS       DANHOL010000159         4536 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.161, whole genome shotgun sequence.
ACCESSION   DANHOL010000159 DANHOL010000000
VERSION     DANHOL010000159.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 4536)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4536)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4536
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.161"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            13..390
                     /locus_tag="PTC08_002084"
     CDS             13..390
                     /locus_tag="PTC08_002084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3899 domain-containing protein"
                     /protein_id="HDK5683557.1"
                     /translation="MKYLNNNALIYILFTPVASLIIWLFSTHTFTQLVNIFFTISILV
                     GILLFTLLVVQEGILDVTSYGFRKFRYQMMRKKNRSRLEDDEFFNPKAPKKAHHFVSP
                     WIKPALIMQLVYFLLAIIIAYLI"
     gene            complement(869..2113)
                     /gene="fabF"
                     /locus_tag="PTC08_002085"
     CDS             complement(869..2113)
                     /gene="fabF"
                     /locus_tag="PTC08_002085"
                     /EC_number="2.3.1.179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase II"
                     /protein_id="HDK5683558.1"
                     /translation="MTKKQRVVVTGLGGLSPIGNDVPTMWENALNGVNGIDKITRIDT
                     EPYQVHIGGELKDFNVEDFIPKKEARKMARFTQYAVVASREALTDSGLTIDETNANRV
                     GVWIGSGIGGMETFEQAYDQLKAKGPRRVSPFFVPMLIPDMASGQVSIDTGAKGPNGA
                     TVTACATATNSIGEAFKIIERGDADVMIAGGTEAPITHMSIAGFSASRALTTNGDIET
                     ACRPFQEGRDGFVMGEGAGILILESLASAQARGAKIYAELVGYGATGDAYHITAPGPE
                     GEGGSRAMEAAIKDAGIQPSDIQYLNAHGTSTPVGDLSEIQAVKNTFGEAAYNLKISS
                     TKSMTGHLLGATGGVEAIFSILSIRDSKIAPTIHANSPDPEIDLDITPNVAVDHDIEY
                     AMSNSLGFGGHNAVLIFKKFSE"
     gene            complement(2132..3073)
                     /locus_tag="PTC08_002086"
     CDS             complement(2132..3073)
                     /locus_tag="PTC08_002086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020369794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketoacyl-ACP synthase III"
                     /protein_id="HDK5683559.1"
                     /translation="MNVGIKGFGAYAPDRVIDNAYFESYLDTSDEWISQMTGIKERRW
                     ADENQDTSDLAYEASIRAIEDAGIDAQDIDMVIVATSTGDHRFPTVANMLQQRLGLGK
                     VASMDQLAACSGFMYGIITARSFVLSGEYQNVLVVGADKLSKITDLNDRSTAILFGDG
                     AGAVIIGEVSENRGILSYELGSDGVGGKYLYQDQETNFIRMNGREVFKFAVRVMGESS
                     QRAVEKANLGPDDINMFIPHQANIRIMESARQRLNLPKEKMSVSVDKYGNTSAASIPL
                     SVKQELENGSIKDDDVVVFVGFGGGLTWGSIVIRWGK"
     gene            3223..3420
                     /locus_tag="PTC08_002087"
     CDS             3223..3420
                     /locus_tag="PTC08_002087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjzD family protein"
                     /protein_id="HDK5683560.1"
                     /translation="MKYFITLIWAILLVEMINFVLNSLSGGGPLNVVTPLFVAVIMVI
                     ALALLDVATTPPKQSQETNEI"
     gene            complement(3571..4476)
                     /locus_tag="PTC08_002088"
     CDS             complement(3571..4476)
                     /locus_tag="PTC08_002088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-nucleotidase, lipoprotein e(P4) family"
                     /protein_id="HDK5683561.1"
                     /translation="MNKWSKTTAALLALGIVSSSVSTVTYASGDEAVKTEQAEKSKTA
                     VKDQTAQMLGQQNIMSVAWYQNSAEAKALYAQGYNTAKETLSKKIKNHHGGKKLAIVL
                     DIDETVLDNSPYQAMSALKGKAFPEGWHEWVQSAQAKPVYGAKSFLQYADRHDVEIFY
                     VSDRSHEKDLDATIKNLRNEKLPQADKKHVLLKKEGEKGKAERRDKVRTDYNLVMLFG
                     DNLLDFDEPKQPTAKSREALVKQHEDDFGSKYIIFPNPMYGSWEATLYDNNYGLENNK
                     KIQSREQSLRYFDAKTNKVKSYEMK"
BASE COUNT         1287 a          955 c          763 g         1531 t
ORIGIN      
        1 aggactgaaa cgatgaaata tttaaacaac aatgcgttaa tctatatctt attcacacct
       61 gtcgcaagcc ttatcatttg gctcttttcg acacacactt ttacacaatt agtgaacatc
      121 ttttttacta tatctatttt agtgggcatt ttattgttca cactattggt cgtgcaagaa
      181 gggatactcg atgtaacaag ctatggtttc agaaagttcc gctaccaaat gatgcgtaaa
      241 aaaaatcgct cacgtttaga agatgatgaa ttttttaatc caaaagcacc taaaaaagca
      301 catcattttg tatcaccgtg gattaaacct gctttaatca tgcagctcgt ttacttttta
      361 ttagcgataa tcattgcata tttaatttaa aaatgtgtat gtgttataca aaaatgtttc
      421 tttagcatgt atatgaagtc tgataattct gaaatgtcac tgtggcgctt taccactgtg
      481 tcgttatcct tatcatacaa gttcaaagta tttatttagt caatagaaat ctagcgacac
      541 atactgtttt gagaggtttt caccagtaca actacaacgt cgtgattatt gataggcgga
      601 atgtttgtga tgactttcta ctattatata gtgatttatt actatttcat tttcaaagta
      661 ggccctcatg taaccatcca aatgtacttc taatgcaaac attgctgtat aactattcaa
      721 agaaataaaa ataactttaa tcatggtata gcccaaaaag acgaggcaat tttgaaatga
      781 cctcgtcttt tttgaaaagt tatatacatg aataaagcga tgacaccttc tatcatcata
      841 gagagtatca tcgctaagtt ccatcaatct attcactaaa tttcttgaaa atgagtactg
      901 cattgtgtcc accaaaacct aaactgttgc tcatcgcata ttcgatgtcg tgatctaccg
      961 caacatttgg tgtaatatct aagtcaattt ctggatctgg tgaatttgca tggatagtcg
     1021 gtgcgatttt actatcacgg atagataaaa tagagaaaat cgcttcgaca ccgcctgttg
     1081 cacctaataa gtgacccgtc attgattttg tagaactaat tttgaggtta tacgctgctt
     1141 caccaaacgt gtttttaacc gcttgaattt cagataagtc gcctactggt gtacttgtac
     1201 cgtgagcatt gaggtactgg atgtcgctcg gttggatacc tgcatcttta atcgcagctt
     1261 ccattgcacg agaaccccct tcaccttctg gacctggcgc agtaatatga tacgcatcac
     1321 ctgttgcacc gtagccgaca agctcagcat aaattttcgc gccacgtgct tgtgcagatg
     1381 ctaatgattc taaaattaaa atccctgcac cttcacccat cacaaagccg tcacgacctt
     1441 cttggaatgg acgacatgct gtttcgatat caccgtttgt tgttaatgca cggctcgcac
     1501 tgaatcctgc aatagacata tgtgtgattg gggcttctgt tccccctgca atcatcacgt
     1561 ctgcatcgcc acgttcgata attttaaatg cttcaccaat agagttcgtt gcggtcgcac
     1621 atgctgtaac tgttgcaccg tttggccctt tcgcacctgt atcgattgac acttgtcctg
     1681 atgccatgtc tggaattaac atcggtacga agaaaggact aacgcgacgt ggtcctttcg
     1741 ctttcaattg atcatatgct tgttcaaatg tttccatacc cccgatgcct gaaccgatcc
     1801 aaacaccgac acgattcgca ttcgtttcgt caatggtaag tcctgaatct gttaatgctt
     1861 cacgtgatgc tacaacggca tattgtgtaa aacgcgccat tttacgtgct tcttttttag
     1921 gaataaagtc ttctacatta aaatctttca gttctccacc aatgtgcact tgataaggtt
     1981 ctgtatcgat tcttgtaatt ttatcgatac cattcacacc atttaatgca ttttcccaca
     2041 ttgtcgggac atcatttccg attggtgata agccaccaag acctgtcact acaacacgct
     2101 gtttttttgt catattcatt tcctcctcta tttatttacc ccatctgatg acgattgagc
     2161 cccaagtcag tcctccaccg aagcctacaa atacaacaac atcatcgtct ttgatgcttc
     2221 cattttccaa ttcttgtttg acactgagcg ggatagaagc cgctgatgtg ttaccatatt
     2281 tatctactga gacgctcatt ttttcttttg gtaaatttaa tcgttgacgt gctgactcca
     2341 taatacgaat atttgcttga tgtggaataa acatattaat atcatctgga cctaaattcg
     2401 ctttttcaac tgcacgttgt gacgattcac ccatcacacg taccgcaaat ttgaaaactt
     2461 cgcggccatt catacgaata aagtttgttt cttgatcttg gtaaaggtat ttgccaccca
     2521 caccatctga acctaactca tagctcagaa taccacgatt ttcagatact tcgccaataa
     2581 tcactgcacc ggcaccgtct ccaaacaaaa tagcagttga acggtcattt aaatctgtaa
     2641 tttttgaaag tttatctgca cccactacga gcacattttg atattcacct gataatacaa
     2701 atgaacgcgc tgtaatgata ccatacataa atccagaaca tgcggctaat tgatccatag
     2761 atgcaacttt accaagtcct agtcgctgtt gtaacatatt tgccactgtt ggaaaacgat
     2821 gatctccagt agatgttgca acaataacca tgtctatgtc ttgtgcatcg atacctgcat
     2881 cttcaatcgc acgaatactt gcctcatacg ctaaatcaga tgtatcttgg ttctcatctg
     2941 cccatctacg ttctttaatc ccagtcattt gtgaaatcca ttcgtcagat gtatctaggt
     3001 atgattcaaa atatgcatta tcgataacac gatctggggc atatgcgcca aatcctttaa
     3061 tacctacatt catggtttga acaccttctt ttaagttttt taataccagg tattaattta
     3121 acatattgtc acaaaaaaag acaagtgaca tgctagggat ggtatacaaa acatctgaag
     3181 catactataa tagaattatc aattaaatgg aggcaatata caatgaaata cttcatcaca
     3241 ttgatttggg ctattttact tgtagaaatg attaatttcg ttttaaatag cttgagtggt
     3301 ggcggtccac tcaatgttgt gacaccactg tttgtcgctg tcattatggt aattgcactt
     3361 gcattgttag atgttgcaac gacaccaccc aaacaatcac aagaaacgaa tgagatttga
     3421 catagtatgc aatgttgaaa aggttggatg ttgaacagaa gttttgttca atttctagcc
     3481 tttttacgta tttcaaagtg cttgccccta tgtaaaaaaa ctgacgagac ttcaatcatg
     3541 cctcatcagt tttttagatt ttagtaaaat ttacttcatt tcatatgatt ttactttatt
     3601 ggttttcgca tcaaagtaac gtaatgactg ttcacgactt tgaatttttt tattgttttc
     3661 taaaccgtag ttattgtcgt ataatgtcgc ttcccagctg ccatacattg ggttagggaa
     3721 aatgatgtac ttgctaccga aatcatcttc atgttgctta actaaagctt cacgtgattt
     3781 cgctgtcggt tgtttaggct catcaaagtc aagtaagttg tcgccaaata acatcactaa
     3841 attgtaatct gtacgtactt tatcacggcg ttcagctttc cctttttctc cttctttttt
     3901 caataacaca tgcttcttgt cagcttgtgg taacttttca tttcttaaat ttttaattgt
     3961 cgcgtctaag tccttttcat gcgaacggtc tgaaacataa aaaatttcaa catcgtggcg
     4021 gtctgcatat tgtaaaaacg acttagcccc ataaacaggt ttagcttgtg cagattgaac
     4081 ccattcatgc caaccttctg gaaaagcttt accttttaat gcactcatgg cttgatatgg
     4141 agaattatca agaacggtct catcaatatc aagaacgatt gctaactttt taccaccatg
     4201 atggttttta attttcttac ttaatgtttc ttttgctgtg ttatagcctt gtgcatataa
     4261 tgcttttgct tctgctgagt tttgatacca agcaacactc atgatgtttt gttggcctaa
     4321 catttgagct gtttgatctt ttactgctgt cttacttttc tctgcttgct cagttttaac
     4381 tgcttcatcg cctgacgcat atgtcacagt agatacacta gaagaaacaa taccgagtgc
     4441 taaaagtgct gctgttgttt ttgaccactt attcaaatga ttcacctttt ctatgtataa
     4501 tttgcgaatt agactaatac gttattcaca catcta
//
LOCUS       DANHOL010000160         4525 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.162, whole genome shotgun sequence.
ACCESSION   DANHOL010000160 DANHOL010000000
VERSION     DANHOL010000160.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 4525)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4525)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4525
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.162"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            52..774
                     /locus_tag="PTC08_002089"
     CDS             52..774
                     /locus_tag="PTC08_002089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyl-gamma-aminobutyrate hydrolase
                     family protein"
                     /protein_id="HDK5683562.1"
                     /translation="MVTVGISANISYDTGGMFPGYERCYVNQDYIHTIVKHHAIPLVL
                     PIHTSQEIISQQIAHIDGLILTGGDDISPSLYHQDPYEKLGRTLLTRDLFDFKLLEAA
                     KRKGIPILGICRGAQIINVYHGGSLYQDLSYREAHTLRHHQKHIPTETTHTIHIEPNS
                     RLADAFETSQIMVNSFHHQTIQTLAPKFKAIAHATDGVIEAIEATNYPYLIGIQWHPE
                     MFWRESLMDRLFSDFIKICESK"
     gene            780..2165
                     /locus_tag="PTC08_002090"
     CDS             780..2165
                     /locus_tag="PTC08_002090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="APC family permease"
                     /protein_id="HDK5683563.1"
                     /translation="MKKLGFWSIVLLSINSIIGSGIFLTPGSVIRISGIYTPLIYVMA
                     AIFASILALTFASASKYVNKSGAAYSYTMVALGPHIGFYVGITRFIAGSIAWGVMATA
                     VVKTVITIFGGDHTDARLITLGFILLMGILLLINVLGKHLLVWVSNLSTIGKIAALLT
                     VIISGLYLVIQTGDTQFSRISTLVDTSQIDSQAFVMAIIAAFYAFTGFESIATGAQDM
                     KSPEKNLPRAIPLAIFMIAFIYIGVISITMTINPVALIQTKEVVSLVAVFDTPVIHRI
                     ILYGSLISMFGINVAASFSTPRIIEAIAHEGHIPKWFKKRTVYDFPLPAFMLTFLIAI
                     AIPLAFQYNLTSIILLSSISRFIQYLIVPICVILFYYGKTSAPTLNHTRKNFFTDVLL
                     PIFSFVLTLVLLIKFNWKGQFLITNDAVTSFNYLGVASLVLSYVIFPIILYRLTPLSK
                     KESTQIPRKMT"
     gene            complement(2409..4463)
                     /locus_tag="PTC08_002091"
     CDS             complement(2409..4463)
                     /locus_tag="PTC08_002091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614887.1"
                     /note="The YSIRK form of extended signal peptide directs
                     nascent proteins to the cross-wall site, while signal
                     peptides lacking YSIRK direct proteins instead to the cell
                     pole. A large fraction of YSIRK proteins are surface
                     proteins anchored by sortase-mediated processing of a
                     C-terminal LPXTG motif; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YSIRK-type signal peptide-containing protein"
                     /protein_id="HDK5683564.1"
                     /translation="MNQYNQKSIYRIRKYTVGVVSVLATMTFLIGGHDAMASEQHTTQ
                     ASSELARTEVTVSNQSLSEDTHTQSLPQKEGQHSHSGDSKNPKTSLFANASSQEQLPT
                     TPEQGVSSDNPNTSYPTHINENTNVPSLVDIQQEKGEKLSDVPNSEKVKTQSGSQIEE
                     PPHSNNRKAGRIAENQDLTSQQSDVALKDQSDVEVSKRVNHRSSEAMRARNVEKAQTD
                     EIDQMTSQNLKPVVKDKTDQGKEQAIAEHKDQTKKGASEEGMTQKETTQEQQSQTRVA
                     NSKEVLEKSSTQAQQKQSTNKYPIVLVHGFLGLVGENAPALYPNYWGGNKFKVIEALR
                     KKGYDIHQASVGAFSSNYARAVDLYYFIKGGRVDYGAAHAAQYGHERFGKIYKGIMPD
                     WRPGKKVHLIGHSMGGQTVRLMEELLRNGSKDEIAYHQKHGGTISPLFKGGLTDMVSS
                     ITTLGTPHNGSQAADQVANKEFVRHIMYALSRVAGSEYSDFDLGLRHWGFKQRPGESY
                     FDYMKRVSESPIWQTKDNAAYDLTLEGSAILNQKTSLNPNITYTTYTAEASHKGASGK
                     EVPNVGVFPLMDLTSRIIGSDARLEWRKNDGVVAVISSLFPLNQPFVKVSSDALATRR
                     GIWQVRPVLKNWDHVDFIGIDIFDLKRTGGELAKFYMSIMDNLLHIEALDMAAHIKKS
                     AS"
BASE COUNT         1249 a          947 c          780 g         1549 t
ORIGIN      
        1 tgttttatat gatacttaaa aatattatta tagatagtgg gtgcattaaa attggtcaca
       61 gtaggtatat cagctaacat ttcatacgat acgggaggaa tgtttcccgg atatgaacgt
      121 tgctacgtca atcaagatta tattcatacc attgttaagc atcatgccat acccttagtt
      181 ttaccgattc acacttcaca agaaataatt tcacaacaga ttgcacatat agacggttta
      241 atcttaactg gtggtgacga tattagccca tctctatacc atcaagatcc ttatgagaag
      301 cttggcagaa cgcttttaac acgtgattta tttgacttta agttacttga agctgctaag
      361 cgtaaaggta ttccaatttt aggtatttgt cgtggtgcac aaatcattaa tgtttaccac
      421 ggaggaagct tatatcaaga tttatcctat cgtgaagcac atacgttacg ccatcatcaa
      481 aaacacatcc ctactgaaac gacgcatacc atccatatcg aacccaattc tcgactcgct
      541 gatgcatttg aaacttctca gatcatggtt aactcatttc atcatcaaac tattcaaaca
      601 ctcgccccca aatttaaggc cattgcccat gcaactgatg gggttattga agctattgaa
      661 gctacaaact atccttattt aatcggtatt caatggcacc ctgaaatgtt ttggagagaa
      721 agtttgatgg atcgactgtt ttcagatttt attaaaatat gtgaaagtaa gtgatatgta
      781 tgaaaaaatt aggcttctgg tctatcgtat tattatctat caattcaatt atcggttctg
      841 gtatcttttt aactcccgga tcagtcattc gaatatcagg gatctatacg ccactgatat
      901 atgtcatggc tgctatattt gctagtattt tagcgctcac ttttgcatct gcttcaaaat
      961 atgtaaataa aagtggcgct gcctattctt atacaatggt ggctttaggt cctcatatcg
     1021 gattttatgt agggattacg cgttttattg ctgggagtat tgcatggggc gtcatggcga
     1081 cagctgtcgt taaaactgtc atcactattt ttggtgggga tcatacggat gcacgtctta
     1141 tcacgttggg ctttattttg ctaatgggaa ttttgttact cattaatgta ctcggcaaac
     1201 accttttagt ctgggtcagc aacctctcca cgattggaaa aatagctgct ttacttaccg
     1261 ttatcatatc aggtctctat ttagttattc aaacaggtga tacccagttt agtcgtatca
     1321 gtacacttgt cgacacttct caaatcgatt cacaagcatt tgttatggcc atcatagccg
     1381 ctttctatgc ttttacagga tttgaaagta ttgctacggg cgcacaagat atgaaatctc
     1441 cagaaaaaaa cttacccaga gccattccgc ttgctatttt catgattgca ttcatttata
     1501 ttggggttat ttccatcact atgactatca atccagtggc gctcattcaa accaaagaag
     1561 ttgtctcatt ggtggccgta tttgatacac ctgttatcca tcgtatcatt ttgtatggaa
     1621 gcttaatatc catgtttggt attaatgtcg ctgcttcttt ttcaacgcca agaattattg
     1681 aagctatcgc ccatgaaggc catatcccga aatggtttaa aaaacgtact gtctatgatt
     1741 ttccgcttcc tgcatttatg ctgacattct taatcgctat tgctatacct ttggcttttc
     1801 aatataactt gacaagtatc attcttttaa gttcaatttc taggttcatt caatatttaa
     1861 tcgttccaat ctgtgttatt ttattttact acggcaaaac gagtgcacct acactaaatc
     1921 atactcgtaa aaatttcttt acggatgtat tgttacctat attttctttt gtattgacac
     1981 tcgttttact tataaaattc aattggaaag ggcagtttct tattacaaac gacgctgtaa
     2041 catcttttaa ctatttgggt gttgcctcat tagttttgag ttacgtcatt ttcccaataa
     2101 tactttatcg tttgacacct ctaagtaaaa aagagtcgac tcaaatacca cgtaagatga
     2161 cctaaaatgg acgattgaaa aatataagga gtgggacgaa aaaacttcat taattatcgc
     2221 tttaacgtac cactccttct catgctatac atcacaagcg cacgtctcta actgtcattc
     2281 cgcttcatca agcagtagtg acttattcgt catttaatcg atgcagatgt ttttgtttac
     2341 tccattaaaa cttttaaagt gaacgcgata tgtgacgata ttcggttact caaacctaat
     2401 acaatggatt aagatgcaga tttttttata tgagcggcca tatctaacgc ttcaatatgc
     2461 aataaattat ccatgatact catataaaat ttcgctagtt ctccacctgt tcgctttaaa
     2521 tcgaaaatat caataccaat aaaatcaaca tggtcccaat tttttaaaac aggtctgacc
     2581 tgccaaatcc ctctacgggt cgctaaagca tcagatgaga ccttaacaaa aggttggttt
     2641 aatggaaata gtgatgaaat aactgcaaca accccatcat ttttacgcca ctctaacctg
     2701 gcatcactgc caataatgcg actcgttaaa tccattaacg gaaacacgcc cacattagga
     2761 acctctttcc ccgaagcccc tttatgcgat gcttcagcag tataagtcgt gtatgtaata
     2821 ttagggttta ggcttgtttt ctgatttaaa attgccgatc cttctaatgt taaatcatag
     2881 gccgcgttat ctttcgtttg ccaaattggg ctttcactca cacgcttcat ataatcaaag
     2941 taactttcac caggtctttg cttaaagccc caatgcctta aacctaagtc aaagtctgaa
     3001 tattcgctac ctgccacccg actcagtgcg tacatgatat ggcgtacaaa ttctttattt
     3061 gccacttgat ctgcagcttg tgagccatta tgaggggtcc cgagtgtcgt tattgatgaa
     3121 accatatcag tgagccctcc tttaaaaagt ggcgaaattg taccaccatg tttttggtga
     3181 tacgcaattt catctttgct accattcctt aaaagttctt ccattaaacg aaccgtctgt
     3241 cctcccatac tatgcccaat taaatgaact tttttacctg gtctccagtc aggcataatt
     3301 cctttataaa tcttaccaaa gcgttcgtga ccatattgag ctgcatgtgc tgcaccatag
     3361 tcaacacgac cgcctttgat aaaataatat aaatccactg cacgtgcata attgctacta
     3421 aatgcaccaa cacttgcttg gtgtatatcg tagcctttct tcctcaacgc ttcaataact
     3481 ttaaatttat tgcctcccca ataattcgga tagagtgctg gtgcattttc acctactaac
     3541 cctaaaaatc catgtactaa cacgatagga tatttattgg tagattgctt ttgctgagct
     3601 tgagtggatg atttttctaa cacctcttta gaattcgcta cacgcgtttg ggattgctgt
     3661 tcttgtgttg tttccttttg cgtcattccc tcttctgaag cgcctttttt agtttgatct
     3721 ttgtgttctg ctatagcttg ctctttacct tgatcagttt tatccttaac gactggttta
     3781 agattctgtg atgtcatttg atcgatttca tctgtctgtg ctttttctac atttcgggcc
     3841 cgcatagctt cagaagatcg atggttcaca cgtttgctca cttcaacatc tgattggtct
     3901 tttaatgcca catcactttg ctgagatgtt aaatcctggt tttctgcaat acgcccggct
     3961 ttacggttgt ttgaatgagg aggttcctca atctgactac ctgattgcgt cttcactttc
     4021 tcgctgtttg gaacatcact taatttttcc cccttctctt gttgtatgtc aactaaagaa
     4081 gggacatttg tattttcatt gatatgagtg ggataagacg tgttaggatt atccgatgaa
     4141 acaccttgct ccggtgtagt aggcaattgt tcttgagatg aagcgttagc gaatagcgat
     4201 gttttaggat ttttagagtc acctgaatga gaatgttgtc cttctttttg aggtaacgac
     4261 tgtgtatgag tgtcttcact tagcgactga ttgcttacag tcacttctgt tctcgctaat
     4321 tcactagatg cttgagtagt atgctgctca cttgccatag cgtcatgccc accgattaag
     4381 aaggtcatcg tcgccaagac tgaaaccaca cctacagtat actttctgat acgataaata
     4441 cttttttgat tgtattgatt catgatatca cctctaataa gattaactcc ccttaattaa
     4501 atccccctta aacaactgta atgat
//
LOCUS       DANHOL010000161         4497 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.163, whole genome shotgun sequence.
ACCESSION   DANHOL010000161 DANHOL010000000
VERSION     DANHOL010000161.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 4497)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4497)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4497
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.163"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            172..1242
                     /locus_tag="PTC08_002092"
     CDS             172..1242
                     /locus_tag="PTC08_002092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HDK5683565.1"
                     /translation="MIEAIIYNISVTIAGIYLFHRLQYAESHDFRFSKSYITVLMTIV
                     GLLLAFQPIPIENYMIQLSFVPLLFLGRYTNSFYTVFAAVIIALVGYFVLSTTLTYAV
                     SLLVIAAIVSTIGPFLKQNHVVSIQILNILSIIILTIIAMIMPSFDTVEVLYLIPISM
                     VATLVTAVFYVDLLRFFSLIERYENEDTVDYLTGLGNVKEFDRHLNEMARVAENERQS
                     LALLLIDIDGFKDVNDAYTHHAGDAVLKQMSHLLQNYVPKKTRIFRNGGEEFSIVLRD
                     CSLDECVKLAESIRKAVEKSNFHLPDKIVIKLSVSIGVGYMTSESHKSQRKLFKDADD
                     MLHVAKNEGRNQVMFSPIINPK"
     gene            1736..2497
                     /locus_tag="PTC08_002093"
     CDS             1736..2497
                     /locus_tag="PTC08_002093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter family protein"
                     /protein_id="HDK5683566.1"
                     /translation="MAEALTIIDENKVIDVVLLAGKVLLESGAETYRVEDTMGRIAAS
                     FGLEDTYAFVTSTAIIFSLNDRTNTRLVRVRERTTDLEKIALANNISRKISRNTLTLD
                     EAKAELIHLEHASLQYSFIIKFLAASIACGFFLFMFGGVGHDFIYAVIAGGAAFLTFD
                     LVQRFIQIKFFSEFISATVVITVAAFFTKNGWATNQDIITIAGVMPLVPGILITNAIR
                     DLMAGELLAGMSRGVEAALTAFAIGAGVAIVLLIF"
     gene            2513..3016
                     /locus_tag="PTC08_002094"
     CDS             2513..3016
                     /locus_tag="PTC08_002094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter family protein"
                     /protein_id="HDK5683567.1"
                     /translation="MTYIFYYIAQFLISFVSTMLFSIIFNAPKRLLLASGFVGAMGWS
                     IYKFTVDMNYGIVMAAFLGSFILAMMSHTMSRRYKRPVIIFIVPGIIPLVPGGAAYEA
                     TRLLVTNAYTPAVNQFLEVTLTSGAIAFGILCAEIFYYIYTRLKHAYGKLKGKHYRKG
                     YHMNNRI"
     gene            3040..4263
                     /gene="pepT"
                     /locus_tag="PTC08_002095"
     CDS             3040..4263
                     /gene="pepT"
                     /locus_tag="PTC08_002095"
                     /EC_number="3.4.11.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase T"
                     /protein_id="HDK5683568.1"
                     /translation="MKEQIIERLSRYVKINTQSDPNSETTPSTERQWDLLHLLESELK
                     AMGLDTDLDRHGYLFATLEANIETEAPTIGFLAHVDTSPDFNAANVNPQMIDNYDGGV
                     ITLGTSGREINPEVFPDILKVKGHTLMTTDGTSLLGADDKAGVVEIMEALQYLIAHPE
                     IKHGRIRVGFTPDEEIGRGPHKFDVERFDADFAYTMDGSQLGELQFESFNAAEAKITF
                     DGVNVHPGSAKDKMVNALNLANAFHQALPVNEVPEHTEGYEGFFHLMELNGNVEKATA
                     QYIIRDHDSTSFENRKQQLIEIQKDINARYYYDPVHLVINDQYRNMAEKIKPLQHIID
                     IPKAVYADLNITPNTEPIRGGTDGSQLSFMGLPTPNLFTGCDNFHGPYEYASIDVMAQ
                     AVQVILGIVQKVAEK"
BASE COUNT         1391 a          860 c          837 g         1409 t
ORIGIN      
        1 ataaaagcgc tgataaggtt aaaatacacg tttattttat cacatcttag gactcaagtt
       61 cctataaaaa cattttcaat cacataaatc tttacacgtt ataaaaaata atgacaaatt
      121 gtaacatttc acatacaata actaatggta aagaaaagga gtcgcttaat tatgattgaa
      181 gctattattt ataatatttc agtaacaatc gctggaatat atttatttca tcgtcttcaa
      241 tacgctgaat ctcatgactt tagattttca aaaagttata ttaccgtatt gatgactatc
      301 gttgggttgt tacttgcatt tcaacctatt ccaatcgaaa actatatgat tcaactttct
      361 tttgtccctt tactcttttt aggccgatat acaaattctt tttacacagt cttcgcagca
      421 gtcattattg cgttggtcgg ttactttgta ttatcgacga cattaactta tgctgtttcg
      481 ttgttagtca ttgcagctat tgtaagtaca attggaccat ttctcaagca aaatcatgtc
      541 gtttcgatcc aaattttaaa tattttaagc attattattt taacgattat tgcaatgatt
      601 atgccatcat ttgataccgt agaagtgctc tatttaatcc ctatttcaat ggttgcaaca
      661 ttagtaacag ccgtatttta cgtcgacttg ctcagattct tctcactcat cgaacgttac
      721 gagaatgaag atactgttga ttacttaacc ggtttaggca atgtaaaaga atttgaccgt
      781 catttaaacg agatggcacg tgttgcagaa aatgaacgac aaagtttagc gttactatta
      841 attgatattg atggctttaa agatgtgaac gatgcttata cacatcatgc aggtgatgcc
      901 gtattaaaac aaatgtctca ccttttacaa aactacgtgc ctaaaaaaac acgcattttc
      961 cgaaacggcg gcgaagaatt ttcgattgtc ttgcgtgatt gctctttaga tgaatgtgtc
     1021 aaacttgctg aaagtattcg taaagctgtg gaaaaatcaa acttccattt gccagacaaa
     1081 attgtcatta aactctccgt ttctattggc gtcggttaca tgacgagtga aagtcataaa
     1141 tcacaacgca aattatttaa agatgctgat gatatgttac atgtcgcgaa aaacgagggg
     1201 cgtaaccaag tgatgttcag ccctattatt aacccaaaat aacgcattaa agccacctta
     1261 cttacacaac agagaggtgg cttttttata tgctttgatt caatatttgc ttggttttaa
     1321 ggtctaggat agcgttccta ccacccactc attaatgtat gaataacgtg tgacacccat
     1381 gtattgaagc accatttttt taagtttgca aaaaccatta gaccctcgaa agataaaggc
     1441 acagccgaaa atccaattcg ccttccatct aacgcatact tcaatcaagc cggattcagt
     1501 tgaggaaagt tccttgtgaa agggagaaat cgtttagcaa cattgactta acataggaat
     1561 agctttctga catctttgtc ccaaaataaa atagcatttc ctccttccca ctttattttc
     1621 agccatttgc caaatcacat tttcaaaact ttcattaaaa ctaagtatta actattgcaa
     1681 gtggtattat tcccatgtag actgactatt gattgagatg aaaggagaca cagccatggc
     1741 agaagcactc acgattattg atgaaaacaa agtcattgat gtcgtcctac ttgctggtaa
     1801 agttttatta gaaagtggcg cagaaaccta tcgtgtagaa gatacaatgg gccgtattgc
     1861 agcgagtttt ggtctagaag atacatacgc ctttgtcaca tcaacagcga ttattttttc
     1921 actgaacgat cgaacgaata ctcgtcttgt tcgggtgcgt gaacggacga cggacctaga
     1981 aaagattgca ctcgctaaca atatttcaag gaagatttcg cgtaatacat taacgttaga
     2041 cgaagcaaaa gcggaactga ttcatctaga gcacgcttca ttacagtatt catttatcat
     2101 taagttttta gctgcatcta tcgcatgtgg tttcttttta tttatgttcg gcggcgttgg
     2161 acatgatttt atttatgccg ttattgctgg tggcgctgca tttttaacat tcgacttagt
     2221 ccagcgcttt attcagatta aatttttctc agaattcatt agtgctacag ttgtaattac
     2281 agtggccgcc tttttcacta aaaacggttg ggctaccaat caagatatta ttaccattgc
     2341 cggcgtcatg ccacttgtac caggaatttt aattaccaat gccattcgtg atttaatggc
     2401 gggtgaactt ttagcaggta tgtcacgggg tgtagaagct gccctcactg catttgcgat
     2461 tggggccggc gttgcgattg tattacttat tttctagaaa ggtgtgagga cattgactta
     2521 tattttttat tatattgcgc agtttttaat cagctttgtt tcgacgatgc tattttcaat
     2581 cattttcaat gcgccgaaac gccttttact cgcatcaggc tttgtaggtg ccatgggttg
     2641 gtccatttat aaatttacag ttgatatgaa ctatgggatt gtcatggctg cttttttagg
     2701 aagttttatc cttgcgatga tgagtcatac gatgagccgt cgttacaagc gacctgtcat
     2761 tattttcatt gtaccaggta tcattccatt agtgcctggg ggtgcagcat atgaagcaac
     2821 ccgtttactc gtaacaaatg cttatacacc tgcagtaaat caatttttag aggtcacttt
     2881 aacatcaggt gccatcgcat tcggaattct ttgtgccgaa atcttctact acatctatac
     2941 acgacttaaa catgcctatg gtaaacttaa aggaaagcat tatcgtaaag gataccatat
     3001 gaataaccgt atctaagtag acaaaaagga gtgttaagta tgaaagaaca aattatcgaa
     3061 agactctcac gttacgttaa aattaataca caatctgatc cgaatagcga gacaacccct
     3121 tcaactgagc gtcaatggga tttgcttcat cttttagaaa gcgaattaaa agcgatgggg
     3181 cttgataccg atttagatcg tcatggttac ctattcgcca cattagaagc gaatattgaa
     3241 acagaggcac ctacaatcgg ttttttagcg cacgtagata catcacctga tttcaacgcc
     3301 gcaaatgtaa atccacaaat gatagacaac tatgacggcg gtgtcatcac tttaggtact
     3361 tctggccgtg aaattaaccc cgaagtcttt ccagatatcc tcaaagtcaa agggcataca
     3421 ttaatgacaa cagacggtac ttccttactt ggtgccgatg ataaagcagg tgttgtcgaa
     3481 attatggaag cactccaata tttgattgca catccagaaa ttaaacatgg ccgtattcgt
     3541 gttggcttta cccctgatga agaaatcggt cgcggtcctc acaaattcga cgttgaacgt
     3601 tttgatgcag atttcgcgta tacaatggat ggtagccaat taggtgaatt acaatttgaa
     3661 agttttaacg ccgcagaagc aaaaattacg tttgatggtg tgaatgtgca tccaggttct
     3721 gctaaagata aaatggttaa tgcactgaat ttagccaatg cgtttcatca agcattacct
     3781 gtcaatgaag ttccagagca tacggaaggt tacgaaggct tcttccacct catggaattg
     3841 aatggtaacg ttgaaaaagc gactgcacaa tacatcattc gtgaccatga cagcacttct
     3901 tttgaaaacc gaaaacaaca acttattgaa attcaaaaag acatcaatgc acgttattat
     3961 tatgatcctg tacatctcgt aatcaatgat caatatcgca acatggcaga aaaaattaag
     4021 ccattgcaac atattatcga cattccaaaa gcggtttatg ctgacctgaa tatcacaccg
     4081 aatactgagc cgattcgtgg cggcacagat ggttcacaac tttcatttat gggcttaccg
     4141 acaccgaact tatttactgg ctgtgataac ttccacggcc cttatgaata tgcttctatc
     4201 gatgtcatgg cacaagccgt acaagtcatc ttaggcatcg tccaaaaagt agcagaaaag
     4261 taaaccttgt aaaaagagca agaaatagaa gtgtttgatg gtgatatcat caatgtctgt
     4321 taaacgatga atggatataa tcccacaaaa acatactaag attagctgtg aagaaattta
     4381 tgacgataga tttcttcaca gctatttttt atagttgtag agagaagtag atcgcgcagt
     4441 ctcgtggatc tttgaatccg taaaaaaact gatcagcttt actccctttt tgaaatt
//
LOCUS       DANHOL010000162         4482 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.164, whole genome shotgun sequence.
ACCESSION   DANHOL010000162 DANHOL010000000
VERSION     DANHOL010000162.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 4482)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4482)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4482
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.164"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            253..396
                     /locus_tag="PTC08_002096"
     CDS             253..396
                     /locus_tag="PTC08_002096"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683569.1"
                     /translation="MININPRELSMENMEIDLSIINEELSPEEVSESGLELPKLEVVD
                     KVY"
     gene            complement(850..2529)
                     /locus_tag="PTC08_002097"
     CDS             complement(850..2529)
                     /locus_tag="PTC08_002097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease J"
                     /protein_id="HDK5683570.1"
                     /translation="MKQLQKNEVGVYALGGLGEIGKNTYAIEYKDEIVIIDAGIKFPD
                     DNLLGIDYVIPDYTYLEQNQDRIVGLIITHGHEDHIGGVPYLLKKINVPIYSGPLALG
                     LIRNKLEEHHLLRQAELIEIDEDTVIDSKHFKVSFYLTTHSIPETYGVIVDTPEGKIV
                     HTGDFKFDFTPVGAPANIGKMAQLGDEGVLCLLSDSTNSLVPDFTLSEREVGQNVYKI
                     FRNCTGRIIFATFASNIYRVQQAVEAAVKYNRKIVTFGRSMENNIKIGTELGYIKAPP
                     ETFVEPNKINSIPKHELLILCTGSQGEPMAALSRIANGTHKQIKIIPEDTVVFSSSPI
                     PGNTKSINRTINALYQAGAEVIHSKISNIHTSGHGSQGDQQLMLRLIRPKYFLPIHGE
                     YRMLVAHGQTGVDCGVPEENVFIHDIGDVLALTRDSARTAGRIPSGNVLVDGSGIGDI
                     GNVVIRDRKLLSEEGLVIVVVSIDFNKNQLLSGPDIISRGFVYMRESGQLIYDAQKKI
                     KQDVIYKLNNNENIQWHQVKSSIIETLQPYLFEKTARKPMILPVIMKVNEK"
     gene            complement(2529..2744)
                     /locus_tag="PTC08_002098"
     CDS             complement(2529..2744)
                     /locus_tag="PTC08_002098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-dependent RNA polymerase auxiliary subunit
                     epsilon family protein"
                     /protein_id="HDK5683571.1"
                     /translation="MSIFKVFYQHNRDEVIVRENTQSIYVEAQSEEQVRRYLKERNYN
                     IEFITKLEGAHLEYEQQSERFNVERAQ"
     gene            3083..3355
                     /locus_tag="PTC08_002099"
     CDS             3083..3355
                     /locus_tag="PTC08_002099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683572.1"
                     /translation="MKSASQLLEEVKNERNREDKFLCEIQFEVRRNEVTMFFEYEEVQ
                     MATQEAHYFRKHNHDPEFLDIETFETLKKALEEEGIRYKQRRDMFM"
     gene            complement(3969..>4482)
                     /locus_tag="PTC08_002100"
     CDS             complement(3969..>4482)
                     /locus_tag="PTC08_002100"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HDK5683573.1"
                     /translation="TLRQRAKEVEFPLTEEERQTLLDMQTFLKNSQDPEIAEKYQLRS
                     GVGLAAPQINVPKRMFAVYLPDDGEGHSYDFAIVNPKIVSHSVQDAYLPTGEGCLSVD
                     EDVPGLVHRHYRIKLKGYDIDGNEINLRLKGYPAIVVQHELDHLNGVLFYDHIDQEHP
                     LQPKNGAMEV"
BASE COUNT         1391 a          801 c          858 g         1432 t
ORIGIN      
        1 gtttatacgc cgttggaact aattcaaaca taataacagg tattccaata tgtttgtcta
       61 ctgctcaaat tgcatcgtta gacataggaa gaaaaataaa taaagttatt atttctgaac
      121 ccacaggaag gtttccatgg tttcctaggg aagcggattg gaacaattcc tggctgaata
      181 ttttaaaaaa acaaagaaaa tagacaattc agtttattta tgttatattc aaagtgaagg
      241 agggtggttt aaatgataaa tattaatcca agagaacttt caatggaaaa tatggaaatt
      301 gacttaagta ttattaatga agagctttcc ccagaagaag tatcagaatc aggattggaa
      361 ttgcctaagt tagaggtagt ggacaaagta tactaagatg tactttatct atttgaatct
      421 gggactaacc ccaaaatttg ttggagtcta ggatatagat atgatttcta gattcctttt
      481 gtaaatggca gttataaaat gtaggaaaat agcggaatga aagtgctgtt tttcctgcat
      541 tttttagtgc gctcggcatg ggtgacatct tgacggtgaa agtctgttac aggcttggta
      601 gtaggaactg ttagcgaaaa acaagggtgt ctattgacaa gtggaatctg aaggaagtcg
      661 gactcaaaca atcgcactga gatataaaat taaagaagac aaaaagtttg attggtaata
      721 gcgatagatc gttgtataaa aaatctctca tgtataggac taacgacatt gcgtttttca
      781 accctttata cataaaatta acgagtctag gcatattgtt gtcctagact cgtttcctta
      841 ttgatatatc tatttttcat tcactttcat aatgactggt aaaatcattg gtttacgtgc
      901 tgttttctca aataagtacg gttgtaatgt ttcgataata gatgatttca cttgatgcca
      961 ctgaatgttt tcgttgttat tcaatttata gatgacatct tgcttaattt tcttttgggc
     1021 gtcgtaaatc aattgaccag attctcgcat gtagacaaag ccacgtgaaa taatgtctgg
     1081 acctgataac agttggtttt tgttgaagtc aatgctaacc acgacaatga ctaatccttc
     1141 ttcagacaat aacttacggt cgcgaatgac aacattccca atatcaccaa taccactacc
     1201 atcgactaat acattacctg atgggatacg gcctgctgta cgtgcactgt ctcgtgtcaa
     1261 cgcaagaacg tcaccgatat catggatgaa gacattttct tctggtactc cacagtccac
     1321 acctgtttga ccgtgtgcaa cgagcatacg atattcaccg tggattggta agaaatattt
     1381 cggtctaatt aagcgtaaca tcaactgttg atcaccttga gagccgtgac cagacgtatg
     1441 gatgtttgaa atcttgctat gaatgacttc agcgccagct tgatacaagg cattgatcgt
     1501 gcggttaatg cttttcgtat tacctggaat aggtgacgaa ctgaatacaa ccgtgtcttc
     1561 aggaatgatt ttaatctgct tatgtgtacc atttgcgata cgtgataacg ccgccatcgg
     1621 ttcaccttgc gagcctgtac ataaaattaa taattcatgc tttggaatgc tattaatttt
     1681 gtttggctca acaaatgttt cagggggtgc tttaatatac cctaactctg ttccgatttt
     1741 gatattattt tccatcgaac gtccaaacgt cacgatttta cggttgtatt taactgcggc
     1801 ttcgacggct tgttgcacac gataaatgtt tgaggcgaaa gtcgcaaaaa taatacgtcc
     1861 tgtacaatta cggaaaattt tatatacgtt ttgaccgact tcacgttcgc ttagtgtaaa
     1921 gtctggtacg agtgaattgg tagagtcaga aagtaaacag agtacacctt catcaccgag
     1981 ttgcgccatt ttaccaatat tggctggtgc gccgacgggt gtgaagtcaa acttaaagtc
     2041 accagtatgc acgattttac cttcaggcgt atcgacaata acaccgtatg tttcaggaat
     2101 actatgtgtt gtcaaataaa aactcacttt aaaatgtttt gaatcaatga cagtatcttc
     2161 atcaatttca atcaattcag cttggcgtaa taaatgatgt tcttctaatt tattacgaat
     2221 taaaccgagt gcgagtggac cgctgtaaat tggtacatta atctttttga gcaggtaggg
     2281 cacaccaccg atatgatcct cgtgaccatg tgtgataatt aagcctacaa ttctatcttg
     2341 gttttgttca agatacgtgt agtcaggtat gacatagtcg ataccgagta aattatcatc
     2401 ggggaatttg attcctgcgt caatgattac aatttcatct ttatactcga tggcgtaagt
     2461 gtttttacca atttcaccta aaccacctaa tgcgtatacg ccaacttcat ttttttgaag
     2521 ttgtttcatt attgcgcgcg ctccacatta aaacgttcgg attgttgttc atactctaaa
     2581 tgtgcgccct ctaatttagt tatgaattca atattatagt tgcgttcttt caaataacga
     2641 cgaacttgtt cttcagattg tgcttcaaca taaatgcttt gtgtattttc acgtacgatg
     2701 acttcatcgc gattatgttg ataaaaaact ttaaaaattg acatatattt tcctcctaag
     2761 ttgaatcact tatctttaat tgatggatat gcttgaacaa ttgaaatgaa cagtgaaaat
     2821 aaaaaacatg aatcgaatat gcatctctag gaatgtctac atcattcaat tcaccagtca
     2881 ctcacagctc attttcaata tgtatagcgg ttattaaatt tccgttctcg tttgagtgta
     2941 tggcgatgtg cgcatacagc ccagttggtt ttattttaca tgatgttatc gaataaataa
     3001 agcggaatgt gataaactag agagtatctt ataattaaat gaatggaatc tcatttaaaa
     3061 ttccccgaaa taggtgatga agatgaaaag tgcgagtcaa ttactagaag aagttaaaaa
     3121 cgaacggaac cgggaagata agtttttgtg tgaaattcaa tttgaagtaa gacgtaatga
     3181 agtaacgatg ttttttgagt atgaagaagt tcaaatggcg acgcaagaag cacattattt
     3241 cagaaaacac aatcatgacc ctgaattttt ggatattgaa acatttgaaa cacttaaaaa
     3301 ggcattggaa gaagagggga ttcgttataa acaacgtaga gacatgttta tgtaacgtat
     3361 cggatgagtc gaaatagcat cacaacgaat caaacagcgg cgaaggattg actttaccgc
     3421 tcttttttta tcctacaaca ttgtgcaaat gaaaaaagga atgggattgg gacattacat
     3481 tttcccaatc cctatataca tatggcgttg caccattaaa gatgataaaa tgaccgaaaa
     3541 ataaaggcaa attagatgaa aatggatgct cttgttttca tgatttcata aacttgtctc
     3601 agttccactg tatttcatat aaggttaccc agaagaatga ggcacctgag gaaatgcgtg
     3661 catactgcta acagttactt ctttacatta aaagtggttg ctgtttatcg cagcagctat
     3721 ctgatttctc aatgtacacg cttatgcgaa gtcgagtcag ccgtgagggg gcagtacgac
     3781 gaaatctttg ctaaacatga gatttctgta ctgttcccaa aatccactaa gtcctcacta
     3841 aatgtagtag tttaatcaag cgttagtaag ttgaagggcc agcccctata aacgcgaggc
     3901 tatgatggca acccaattct tatattccat ccgctacctt tttaatcgtt ttaaatagtt
     3961 tgttattctt aaacttccat cgcaccattt ttaggttgca atggatgttc ttggtcgata
     4021 tgatcataaa acagtacgcc gttaagatgg tccaattcat gttgtactac aatcgctgga
     4081 taacctttca agcgtaagtt gatctcattg ccatcaatat cataaccttt aagtttgata
     4141 cggtaatggc gatgaacaag gcctggaaca tcttcgtcca cgctcaagca accttcacct
     4201 gttggcaaat acgcatcttg aacactatga ctcacaattt ttgggtttac aatcgcaaaa
     4261 tcatatgaat gtccttcacc atcatcaggt aaataaaccg caaacatgcg tttcggtaca
     4321 ttaatttgag gtgctgctaa tccaacccca ctacgtaatt gatatttttc agcaatttct
     4381 gggtcttgac tattttttaa aaaagtttgc atatctaata aagtttgtcg ttcttcttca
     4441 gttaatggga actccacttc ttttgctctt tggcgaagtg ta
//
LOCUS       DANHOL010000163         4462 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.165, whole genome shotgun sequence.
ACCESSION   DANHOL010000163 DANHOL010000000
VERSION     DANHOL010000163.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 4462)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4462)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4462
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.165"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(76..1173)
                     /locus_tag="PTC08_002101"
     CDS             complement(76..1173)
                     /locus_tag="PTC08_002101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HDK5683574.1"
                     /translation="MTNKVWFRTGVALLLLFLIIKLFLDVNHIFMPIIIIIQSIILPL
                     LLSGFLFYICLPFQKMLEKRHLPRWASITIILLALTAMMAAVIGVIGPVIATQIENLI
                     HQIPFIQREAERLINFALDQRDRLPDQVTEKINDIVSYFSQMASDLLSNSLNIISSIV
                     STLFLLILVPFFLIYMLKDHERFIPAVANIFNGERKIFIVNLLKDLNQTLMSYIQGQV
                     TVSLILGAILYIGYSIIGLEYTMLLVMFAIVANMIPFLGPWMAFLPAGILGLIQSPTT
                     FIWVCVITLIAQQLEGNVITPNVMGKSLNIHPLTIIIVILASGSLGGFTLILVAVPLY
                     AVLKTIVRNVFKYRHQIMHKAHSDVDDKGML"
     gene            1392..2963
                     /locus_tag="PTC08_002102"
     CDS             1392..2963
                     /locus_tag="PTC08_002102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine:cation symporter family protein"
                     /protein_id="HDK5683575.1"
                     /translation="MLETIVGWLNEVVWSKPLVYGLLLTGVAFSLMSRFLQVRHFKEM
                     IRLMFQGEKSPTGISSFQAIALSLAGRVGTGNIVGVSTAIFIGGPGAVFWMWATAFLG
                     AGTAFIESALGQIYKQEEDGEYRGGPAYYIEKGIKGKFGKVYGLVFAIVTIISVGLLL
                     PGVQSNAIASSMHNAFGIPAWVIAVVLVVVLALIIFGGVKWIAKVATAVVPFMAIIYI
                     LMAIVIIILNIQEVPALFALIFKSAFGMEAAFGGIIGAMIEIGVKRGLYSNEAGQGTG
                     PHAAAAAEVSHPAKQGLVQAFSVYVDTLFVCTATALIILISGTYNTTDGTVAADGMPG
                     LLKNSEIFVQNADGTKDYSGTAMYAQAGIDKALQGSSYHFDPNFSGFGSYFIAIALFF
                     FAFTTILAYYYIAETNVSFLTNRIAKNQNQLWRNVTRLVLIAATAYGAVKTADIAWAM
                     GDLGVGLMAWLNIIAIWILYRPAMHALKDFERQKKEKGTGKTAIYRPDPKEIPTATFW
                     LEDYPKRLKEEDIQP"
     gene            3066..3800
                     /locus_tag="PTC08_002103"
     CDS             3066..3800
                     /locus_tag="PTC08_002103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase family protein"
                     /protein_id="HDK5683576.1"
                     /translation="MTTFNPGEVTVTHLQSDYLEREITLSVYLPKDYSDLYKSKVIFC
                     FDGRDFLRYGQLHRVYEKLRKNGEVERAIIVGLHYQNVKMRHMEFHPEGEKAAQTVQA
                     VANEILPWIDENFATYKVGNARILLGDSLAGSIALLTALSYPRVMSQVGLLSPHYDDI
                     VKLIFNRCQFKSELNIWHAVGKEEIDFKLPTSGERADFLTPNRTLKDLFESQQMTYYY
                     EELDGGHNWKTWQKELPKMLTYFLSN"
     gene            3854..4360
                     /locus_tag="PTC08_002104"
     CDS             3854..4360
                     /locus_tag="PTC08_002104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002494354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2'-5' RNA ligase family protein"
                     /protein_id="HDK5683577.1"
                     /translation="MILGLALIPSKDFQNEVNAYRKRYDKHYTMIQPHITIKSNFEID
                     EKDLDQVKAEIEKRLEGAQQAEVYVSKASNFAPITNVIYFKVEKNAALEDLFNRFDGE
                     DFYGKSEHAFVPHFTIAQGLTSQEFEDIYGQVHLAGIEHKEIIDTLSLMHFKEDVAEW
                     EEIATFSL"
BASE COUNT         1460 a          711 c          928 g         1363 t
ORIGIN      
        1 ttttattgat tttgaaagtt aagcaataaa aaacatgcta accgtattgt tgaagttagc
       61 atgtctcttt attaattaaa gcattccttt atcatcgacg tcactgtggg ctttatgcat
      121 aatttgatga cggtacttga acacgttacg tacgatagtt ttaagtactg cataaagtgg
      181 tactgcgact aaaatcagtg taaagccacc taaactacct gaagctaaaa tcacgatgat
      241 aatcgtaagt ggatgaatgt ttaatgattt acccatgacg ttaggtgtaa tgacgttacc
      301 ttcgagctgt tgtgcaatca aagtaataac acagacccaa atgaacgtgg ttggactttg
      361 aattaaacct aaaataccag ctggtaagaa cgccatccaa ggacctaaaa acggaatcat
      421 atttgctaca atcgcaaaca ttactaagag cattgtgtac tctaaaccga taatcgaata
      481 accaatatat aaaatagccc ctagaattaa actcactgtc acttgacctt gaatgtaaga
      541 catcagcgtt tggtttaaat cttttaataa gtttacgatg aaaattttac gttcgccatt
      601 aaaaatattt gcgacggctg gaataaagcg ttcgtggtct tttaacatat aaatcaagaa
      661 gaatggtact aaaatcaaca agaacaatgt cgacacaata cttgaaataa tgttaagcga
      721 gttagacaac aaatccgaag ccatctgact aaaataagac acgatgtcat taattttttc
      781 tgtcacttga tcaggtaagc gatcgcgttg gtcgagtgca aaattaatta aacgttcagc
      841 ttcacgttga ataaatggaa tttgatggat taaattctcg atttgtgtag caataaccgg
      901 tccaatcaca ccaatcactg ccgccatcat tgctgttaat gcgagtaaga taatcgtaat
      961 acttgcccat ctcggtaaat gacgcttctc gagcattttt tggaatggca aacagatgta
     1021 aaataaaaaa ccactcagca ataaaggtaa tataatagat tgaatgataa taatgattgg
     1081 cataaatatg tggttaacat ctaaaaataa tttgatgatt aaaaataaaa gtagtagtgc
     1141 tacacctgtt cggaaccaca ctttatttgt catacattgt ttcctccttc tataagaaca
     1201 ctgattacag tatatcccaa tcagaatcac gttaaaagaa aaaatttaac caatacttga
     1261 atcatttgca ttttttgcat ggtgtgttgt tctaaaaaaa gagttgcacg gaatttttta
     1321 actgtgtata ctgatatcat atttatcaga aaattataaa aaagggtgca gaagaaaaag
     1381 ggggaatgtt tatgttagaa acgattgtgg gatggcttaa tgaagttgtt tggagtaagc
     1441 cattagttta tggtctttta cttacagggg ttgcatttag tttgatgagt cgttttttac
     1501 aagtccgtca ctttaaagaa atgattcgtc tcatgtttca aggtgaaaag tcaccaacgg
     1561 ggatttctag ttttcaggct attgcgttat cattagcagg tcgtgtgggg acagggaata
     1621 tcgttggtgt atctactgcg attttcatcg ggggtcctgg tgcagtcttt tggatgtggg
     1681 ctactgcatt tttaggcgca ggaacagcct ttatcgagtc agcgctaggt caaatttata
     1741 aacaagaaga agatggcgaa taccgcgggg gtccggcata ttatattgaa aaagggatta
     1801 aaggtaaatt tgggaaggtt tacggtttag tcttcgcgat tgtgacgatt atttcagttg
     1861 gtctattgtt gccaggtgtt cagtcaaatg cgattgcaag ttcaatgcat aatgcgttcg
     1921 gtattcctgc gtgggtgatt gcagtcgtac ttgtagtcgt tttagcactc attatttttg
     1981 gtggcgtaaa atggattgcg aaagtagcga cggcagttgt tccatttatg gcgattattt
     2041 atattttaat ggcgattgtc attatcatac ttaatattca agaagtacct gcattgtttg
     2101 cgcttatctt taaatcagca ttcggtatgg aagccgcttt tggtggtatt atcggtgcaa
     2161 tgattgagat tggtgtgaaa cgtggactgt attcaaatga agcaggtcaa ggtacaggac
     2221 ctcacgcagc ggcagcagca gaagtgtctc atccagcgaa gcaaggtctc gttcaagcat
     2281 tttctgttta cgtggataca ttattcgttt gtacagcaac agcgttaatt attttaattt
     2341 ctggtacata taatacaaca gatggaacag ttgcggctga tggtatgcct ggtttattaa
     2401 aaaatagtga aatttttgtg caaaacgcgg atggtacgaa agattactct ggtactgcga
     2461 tgtatgcaca agcagggatt gataaagcgt tacaaggttc gagttaccac tttgatccga
     2521 atttctcagg atttggttcg tactttatcg cgattgcgtt attcttcttt gcctttacaa
     2581 cgattttagc gtattactac atcgctgaaa cgaatgttag tttcttaacg aatcgtattg
     2641 cgaaaaatca aaaccaatta tggcgtaatg tgacacgtct cgtcttaatc gcagcgaccg
     2701 catacggtgc agtgaaaacg gctgacatcg catgggctat gggtgactta ggtgtcggat
     2761 tgatggcatg gttaaacatc attgcgattt ggattttata tcgaccagcc atgcatgcat
     2821 taaaagactt tgaacgtcag aagaaggaaa aagggacagg caaaaccgcg atttaccgtc
     2881 cagatcctaa agagattcca actgctacgt tctggttaga agattatccg aaacgtttga
     2941 aagaagaaga tattcaaccg taacgtcaca aattagacaa aatagcgtca aatcaagctt
     3001 tatagattaa cacagcatgc gtctcctgat acaatgagat taattcgtat gaggaggcgc
     3061 tttttatgac tacatttaat ccaggtgaag taacggtcac acacctacaa agcgactact
     3121 tagagcgaga aattacatta tcagtctatt tgccgaaaga ttattctgat ttatataaat
     3181 cgaaagtaat tttttgtttt gatggtcgtg actttctaag gtatggtcaa cttcatcgtg
     3241 tatatgagaa attaagaaaa aatggggaag tcgagcgtgc aattatcgtc ggactgcatt
     3301 atcaaaatgt gaagatgcgt catatggaat tccatccaga aggcgaaaaa gctgcacaaa
     3361 cggttcaagc ggtcgcaaat gagattttac cgtggattga tgagaatttc gcaacatata
     3421 aagtagggaa cgcgagaatt ttattaggtg atagtttagc agggagtatc gcattgttaa
     3481 ctgcactttc gtacccacgt gtgatgagtc aagtcggttt attgagtccg cattatgatg
     3541 atattgtgaa actcattttt aatcgttgtc agtttaaatc agaattaaac atttggcatg
     3601 cggtaggtaa agaagagatt gattttaaat tgccaacaag tggtgagcga gcagacttct
     3661 taacacctaa ccgtacatta aaagatttat ttgaatcgca acaaatgaca tattactacg
     3721 aagaattaga tggtgggcac aattggaaaa cttggcagaa agaattgcca aaaatgttaa
     3781 cttacttttt aagtaactag ttttaagaaa atttgctata ataaaagtaa gcgaatacaa
     3841 aggaggaatt caaatgattt taggattagc gttaattccg tcaaaagatt tccaaaacga
     3901 ggtcaacgct tatcgtaaac gttatgataa gcactacaca atgattcaac ctcatattac
     3961 gattaaaagt aattttgaaa ttgatgaaaa agatcttgat caagttaaag ctgaaataga
     4021 aaaacgttta gaaggggcac aacaagcaga ggtttatgta tcaaaagcat caaactttgc
     4081 accgattaca aacgttattt attttaaagt cgagaaaaat gcagcactag aagatttatt
     4141 caaccgcttt gatggcgaag atttttatgg taaatctgaa cacgcatttg taccacactt
     4201 tacgattgca caaggtttaa caagccaaga gtttgaagat atctatggtc aagtgcattt
     4261 agcaggcatt gaacataaag aaataattga tacattatca ttgatgcatt ttaaagaaga
     4321 tgtagcagaa tgggaagaaa ttgctacgtt ttctttataa tatgattgaa aaataaaaaa
     4381 tgggctgatg tggcatgggg cgtgcatatc agtccatttt ttaagttcga aaattcatat
     4441 tatctgtgtc tatcaaaata tg
//
LOCUS       DANHOL010000164         4451 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.166, whole genome shotgun sequence.
ACCESSION   DANHOL010000164 DANHOL010000000
VERSION     DANHOL010000164.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 4451)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4451)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4451
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.166"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            92..361
                     /locus_tag="PTC08_002105"
                     /pseudo
     CDS             92..361
                     /locus_tag="PTC08_002105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498760.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            430..1101
                     /locus_tag="PTC08_002106"
     CDS             430..1101
                     /locus_tag="PTC08_002106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683578.1"
                     /translation="MVEDIASQLQSVLHEDEWMLSLTQSDSNGSIYVLFRKGAFAYIP
                     IRISNHKNHSYFSNKTFYTTIEEDVLLSQIRTHLDHSSWYIFRYEDYFTLKMLTKLNM
                     KNLRIYVDNSLGIYDGALMGLLFYQIRYFNRNHKEMNTVSESFQKYLRRLFAAGLLNG
                     YRQANNDLSVYVTQMGKTMLTEYWHVYQERYLTDIKKIDYRYVEVPMDEILYTIDDDH
                     KIIQK"
     gene            1659..1934
                     /gene="rpsP"
                     /locus_tag="PTC08_002107"
     CDS             1659..1934
                     /gene="rpsP"
                     /locus_tag="PTC08_002107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="HDK5683579.1"
                     /translation="MAVKIRLTRLGSKRNPFYRIVVADARSPRDGRIIEQIGTYNPAA
                     VNAPEVKIDAELALKWLKDGAKPTDTVHNLLSREGILKTFDEQKKAK"
     gene            2257..2760
                     /gene="rimM"
                     /locus_tag="PTC08_002108"
     CDS             2257..2760
                     /gene="rimM"
                     /locus_tag="PTC08_002108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimM"
                     /protein_id="HDK5683580.1"
                     /translation="MKVEVGKIVNTHGIKGEVKVQSHSDFTEIRFQPGEVLQAEYQGQ
                     TLLLTVKSHRMHKGLHMLTFEGYTNINDIEHLKGTHLYQERDHEAIELDEHEFYYSDI
                     IGCTVFDGDRPIGRVTEIFETGANDVWVVKGDKEHLIPYIADVVKEVDIEGRRIVITP
                     LEGLLNE"
     gene            2757..3488
                     /gene="trmD"
                     /locus_tag="PTC08_002109"
     CDS             2757..3488
                     /gene="trmD"
                     /locus_tag="PTC08_002109"
                     /EC_number="2.1.1.228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011275960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD"
                     /protein_id="HDK5683581.1"
                     /translation="MKIDYLTLFPEMFEGVLNQSILKRARENEALTTRLINFRDYANN
                     KHNQVDDYPYGGGQGMVLKPEPIFNAMADLEVSDDTRVILMTPQGQPFNQKLAESLAE
                     AEHLVFICGHYEGYDERIREHLVTDEISVGDYVLTGGELPAMVMTDAIVRLIPGVLGN
                     QVSHEDDSFSSGLLEYPQYTRPSDYEGMTVPAVLLSGDHAKIAQWRHEQSLTRTWLKR
                     PDLLDHYPLTDQDQKFIQSLKRTLK"
     gene            3596..3946
                     /gene="rplS"
                     /locus_tag="PTC08_002110"
     CDS             3596..3946
                     /gene="rplS"
                     /locus_tag="PTC08_002110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011303276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="HDK5683582.1"
                     /translation="MTNHKLIEAVTKSQLRDDIPSFRPGDTLRVHVRIIEGTRERIQV
                     FEGVVIKRRGGGISETFTVRKISSGVGVERTFPLHTPKIEKIEVKRRGKVRRAKLYYL
                     RSLRGKAARIQEIR"
     gene            complement(4214..4351)
                     /locus_tag="PTC08_002111"
     CDS             complement(4214..4351)
                     /locus_tag="PTC08_002111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-class phenol-soluble modulin"
                     /protein_id="HDK5683583.1"
                     /translation="MGDLFESITNIVTSAIQHDWVNMGAAIVATVQHGVELIAKLFGL
                     G"
BASE COUNT         1440 a          753 c          965 g         1293 t
ORIGIN      
        1 tgattaaagc acgaataaat ataaaaatcc caccacacaa atgcataata tattataata
       61 aattgtaaga gaaacaaagg taggggatct tatggtttac caaagagaat tcgcattaga
      121 aaaagaaatg atggcacaat taaaatctaa tggctatgaa cctgtgacca ttcgaaatga
      181 acagcagcta ttggataatt ttcgtcaaat attaaacgaa cgccatgcag ataaattaga
      241 aggcaaacca ctgtcagata aagagtttca acgcttacta acgatgatta atggtaaagg
      301 tatttttgaa agtgcgcgta ttttacgtga taaattgccg ttgaaacgtg atgatgagtc
      361 taatgaagaa aaagtgtgtc attgattgag ggaatcaatg tcgtagggtg aagtaagggg
      421 gaatgtctaa tggtggaaga tattgcgtct caattgcaaa gtgttttaca tgaggatgag
      481 tggatgttgt cgctaacgca gtctgattcc aatggttcga tttatgtgtt gtttcgaaag
      541 ggtgcttttg cgtatatacc gattcgtatt agcaaccata aaaatcattc gtatttctcc
      601 aataaaactt tttatacgac aatagaagaa gatgttttac tcagtcaaat cagaacacac
      661 ctcgatcata gtagttggta tatatttaga tacgaagact acttcacact taagatgtta
      721 acgaagctca atatgaaaaa tttgaggatt tacgttgata actcattggg gatatacgat
      781 ggtgcgctga tgggcttgtt gttctatcaa attcgatatt ttaatcgaaa ccataaagag
      841 atgaatacgg tgtcagaatc gtttcaaaaa tatttgaggc ggttgtttgc ggcaggtctg
      901 ttgaatggtt atagacaagc gaacaatgat ttgtctgtat atgtgacgca aatggggaaa
      961 accatgctta cagagtattg gcacgtctat caggagcgtt atctcactga tataaaaaag
     1021 attgattatc ggtatgttga agtgcctatg gatgaaattt tatatacaat tgatgacgac
     1081 cataagatca tacaaaagta atgaacgtat gatgtcagtg tgagatagat gatagtatga
     1141 gacggtaaaa aaagattggg atatagaaat tttttagtct caagccattc atagattaat
     1201 aacttattaa tgtttttaaa tcagtcggaa aatgaaggcg aatgggatac aaaaaatgga
     1261 tgctattggt tttcttgatt tcataaactt gccctctgtt tcctgtattt gatgtcagat
     1321 tgcccagaag gctgacactc ctgagggatc agctggtccg gagaatccac taacgcttca
     1381 acaagtgtaa cagtttaatc aagcgttagt tagtcgaagg gccagcccct aggaaaggga
     1441 agcctagatg gcaatcaaag ccaaaaatca ttgagggcaa gttaagcaaa atcccctgtc
     1501 aatagccttc aaaatttttg tatcccatcc ccaaatgtgc acagcacgac agaaatttta
     1561 aaatggtaaa gtattttctc tttacaaaac catgagttcc tgttattata atttcttgta
     1621 gataacaaaa cttatgacat taaaggagag aattataaat ggcagttaaa attcgtttaa
     1681 cacgtttagg ttcaaaaaga aacccattct atcgtatcgt agtagcagac gcgcgttcac
     1741 cacgtgacgg tcgtatcatc gaacaaatcg gtacttacaa cccagcagcg gtaaatgcac
     1801 cggaagttaa aatcgatgca gaattagcac ttaaatggtt aaaagacggt gcgaaaccaa
     1861 cagatacagt tcacaacctt ttatcacgtg aaggtatttt aaaaactttt gacgaacaga
     1921 aaaaagcaaa ataatgtaag catatcaacg gggaagggag agacaccttt cctatttgat
     1981 tttaggcgtt aacgtttgtt gacgtcgcgg tgattcaagc ggatagggca tgacagggtc
     2041 gataagcgta gtcgtgcaag aagtgactga ctttaaaaca gtaaatttca agttttaaaa
     2101 atcgagtcgc ctttctagag ttcaagttga gagatacttt gaaactctac ataaatggaa
     2161 tcaccaatca tgaggtgaga cgagaagtga cttgatgaga ggtgcttcgg tctcatctct
     2221 tttttgtata aatagtgata ataggaggct cccgatatga aagtagaagt gggtaaaatt
     2281 gtgaacacac acgggatcaa aggcgaagtc aaagttcagt ctcattcgga ctttacagag
     2341 attcgctttc aacctggcga agtgttacaa gcagaatatc aaggtcaaac gctcctttta
     2401 acggtgaagt cccatcgtat gcataaagga ttacatatgt taacgtttga aggttatacg
     2461 aatattaatg acatcgaaca tttgaaaggg acacatctct atcaagagcg tgatcatgaa
     2521 gcgattgaat tagatgaaca tgaattttat tactcagaca ttatcgggtg tacggtgttt
     2581 gacggtgatc gtccgattgg tcgcgtcacg gaaatttttg aaacaggtgc gaatgatgtg
     2641 tgggtcgtga aaggtgacaa agaacatctc attccataca ttgcagatgt tgtgaaagaa
     2701 gtcgacattg aaggacgtcg tatcgtcatt acaccgttag aagggttgtt aaacgaatga
     2761 aaatcgatta cttaacgctc ttcccagaaa tgtttgaagg tgtgctcaat cagtctattt
     2821 taaaacgtgc aagagaaaat gaggcattaa cgacgcgatt gattaatttt cgtgattatg
     2881 ccaacaataa acacaatcaa gtcgatgatt atccttacgg tggcggacaa ggcatggtat
     2941 tgaagccaga accgattttt aatgcgatgg cagatttgga agtttcagat gacacacgcg
     3001 tgattttgat gacgccacaa ggacaaccgt tcaatcaaaa gttggcggaa tctcttgctg
     3061 aagcggaaca tctcgttttt atttgcggcc attatgaagg ctatgatgaa cggattcgcg
     3121 aacatttagt tacagatgaa atttctgtcg gcgattatgt gctgacaggg ggcgagttgc
     3181 ctgcgatggt catgacagat gcgattgtgc gtctcatccc gggtgtacta gggaatcaag
     3241 tgtcgcatga agatgattca ttttcgagcg gcttattaga atatccacaa tatacgcgtc
     3301 ctagtgatta tgaggggatg acggtacctg ctgtgctatt gtctggagat catgcgaaaa
     3361 ttgcacaatg gcgtcatgag caatcattga cacgtacttg gttgaaacgt cctgatttat
     3421 tggaccatta tccattgaca gaccaagacc agaaatttat tcaatcgtta aaaagaacat
     3481 tgaaataaga ctgaatgtat gctagtatat tttaagtgtg gaaacacgaa tatcactatg
     3541 atccgctgct atatattgtc gaggcaagaa cataggttga aggagagaat taatcatgac
     3601 aaatcacaaa ttaattgaag cagtaacaaa atcacaatta cgtgacgata tcccatcatt
     3661 ccgtcctggt gacactttac gtgtacacgt gcgtatcatc gagggtactc gtgaacgtat
     3721 ccaagtattc gaaggtgttg tcatcaaacg tcgtggtggc ggtatttctg aaacattcac
     3781 tgttcgtaaa atctcatcag gtgtaggtgt tgaacgtacg ttcccattac acacaccaaa
     3841 aatcgagaaa atcgaagtga aacgtcgcgg taaagtacgt cgtgcgaaac tttattactt
     3901 acgtagcctt cgtggtaaag ctgcacgtat ccaagaaatt cgttaatttg agtcttaagg
     3961 acacgcatat caaacagggt tgggacaatt cggtgtctca accctgtttt attgatgtaa
     4021 cgatttcatt gcaatgcatt atcgttgttt gaggactgtg atcagggcta ggatatttat
     4081 tcaccctagc ccccaaatgt gattgaatca gaagttacag ttcatatctc tgatgtgtgt
     4141 ttgcatttta tgcttttcat tttccaagtt ctccagtggg cgtgattagg agatttttct
     4201 atagtttgca ttcctaaccc aaaccgaata attttgcgat taattcgaca ccgtgctgta
     4261 ctgtagcgac aatcgcagca cccatgttca cccagtcgtg ctgaatggca gaagttacaa
     4321 tgtttgtgat tgactcaaac aaatcaccca ttcgaaacac ctccttttat tgtataactt
     4381 tattttaaat cctcttatac ataaatttat gattatttca tagttagaaa tataatatgc
     4441 ttaaatgcaa a
//
LOCUS       DANHOL010000165         4437 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.167, whole genome shotgun sequence.
ACCESSION   DANHOL010000165 DANHOL010000000
VERSION     DANHOL010000165.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 4437)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4437)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4437
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.167"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            4..1188
                     /gene="rpsA"
                     /locus_tag="PTC08_002112"
     CDS             4..1188
                     /gene="rpsA"
                     /locus_tag="PTC08_002112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HDK5683584.1"
                     /translation="MMTEEFNESMINDIKEGDKITGEVQQIEDKHVVVHVNGGKYNGI
                     IPISQLSTYHVENANEVVKVGDEIGAYVTKIEVDEENETGSYILSKRKLEEEQSYAYL
                     QEKLENNETIEAKVTEVVKGGLVVDVGQRGFIPASLISTDYIEDFSDYEGRVLELKVE
                     ELEPEKNRVILSRKAVEAEENEKKKAELLQSIKAGDVIEGKVARLTNFGAFIDLGGVD
                     GLVHVSELSHEHVKSPEEVVSIGDTVKVKVRSVEQDSERVSLSIKDTLPSPFETIQEK
                     YSEGDIVEGKVMRLASFGAFVEISSGLQGLVHISEISHKHIGTPGEVLEPGQTVQVKI
                     LGINPEEERISLSIKAANPDEETEEASEETTQHYTQPADENENNPTLGDVFGDKLKDL
                     NL"
     gene            1555..2865
                     /gene="der"
                     /locus_tag="PTC08_002113"
     CDS             1555..2865
                     /gene="der"
                     /locus_tag="PTC08_002113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase Der"
                     /protein_id="HDK5683585.1"
                     /translation="MTKPVVAIVGRPNVGKSTIFNRIVGERVSIVEDTPGVTRDRIYS
                     SGEWLTHEFNVIDTGGIEIGDAPFQTQIRAQAEIAIDEADVIIFMVNVREGVTQNDEL
                     VAQILYKSKKPVVLAVNKVDNPDMRNDIYDFYSLGFGEPFPLSGSHGLGLGDLLEEVA
                     KHFKKDTSDPYDDDTIRLSLIGRPNVGKSSLINAILGEERVIVSNIAGTTRDAIDTVY
                     SYEGQDYVLIDTAGMRKKGKVYESTEKYSVLRALKAIERSNVVLVVLDAEQGIIEQDK
                     RVAGYAHEEGKAIVIVVNKWDTLEKDSNTMKKFMDEVRKNFQFLDYAQIAFVSAKEKM
                     RLRTLFPLINEASENHKKRVQSSTLNEVITDAIAMNPTPTDKGRRLNIFYATQVAIEP
                     PTFVVFVNDVELMHFSYKRYLENQIRQAFGFEGTPVHIIARKRN"
     gene            2881..3879
                     /locus_tag="PTC08_002114"
     CDS             2881..3879
                     /locus_tag="PTC08_002114"
                     /EC_number="1.1.1.94"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000161771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent glycerol-3-phosphate
                     dehydrogenase"
                     /protein_id="HDK5683586.1"
                     /translation="MTNITVFGTGSFGTALANVLADNGHNTLMWGKTSTTIDEINHEH
                     TNHNYLKGVTLNSTIQATTDIQTAIDHSDIYLIALPTKAIREVMSQVNQLLISKKSFI
                     HVTKGIENATFKRVSEMLEDSISPEYNAGIGVLSGPSHAEEVVIKQPTTVSAASSNPE
                     LRKLIQDLFMTDYLRVYTNDDLVGVELGGALKNIIAIASGVLAGMGFGDNAKAALMTR
                     GLAEITRLGVKLGADPLTFQGLGGIGDLIVTCTSTHSRNYSLGYQLGKGKSLDEIMNH
                     MNMVAEGVYTTESVYNLSKKENVEMPITEALYHVLFENQPVEQAVKTLMGRTKKSE"
     gene            4050..4322
                     /locus_tag="PTC08_002115"
     CDS             4050..4322
                     /locus_tag="PTC08_002115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015900354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HU family DNA-binding protein"
                     /protein_id="HDK5683587.1"
                     /translation="MNKTDLINAVAEQADLTKKEAGLAVDAVFEAIQTSLAKGEKVQL
                     IGFGNFEVRERAARKGRNPQTGKEIDIPASKVPAFKAGKALKDAVK"
BASE COUNT         1508 a          762 c          887 g         1280 t
ORIGIN      
        1 atcatgatga ctgaagaatt caatgaatca atgattaatg acattaaaga gggcgataag
       61 attacaggag aagtacaaca aattgaagat aagcacgttg ttgttcacgt caatggcggt
      121 aaatacaacg gtattattcc aattagtcaa ctttccacat atcatgttga aaatgcaaac
      181 gaagtggtca aagtcggcga cgaaattggc gcttatgtga ctaaaattga agttgatgaa
      241 gaaaacgaaa caggcagtta catcctttct aaacgtaaat tagaagaaga gcagtcttat
      301 gcttatttac aagagaaatt agagaacaac gaaacgattg aagcgaaagt aactgaagtc
      361 gttaaaggtg gtttagttgt ggatgtaggt caaagaggtt ttattcctgc atcattaatt
      421 tcaactgatt acattgaaga tttctctgat tatgaaggac gtgtgcttga actcaaagtt
      481 gaagagcttg aacctgaaaa aaatcgcgtc atcttaagtc gtaaagccgt agaagcagaa
      541 gaaaacgaaa agaaaaaagc agaattatta caatcgatta aagctggcga cgtaattgaa
      601 ggtaaagttg cgcgtttaac taactttggc gcatttattg accttggtgg cgttgatggt
      661 ttagtccatg tttctgagtt atctcacgaa catgtaaaat caccagaaga agttgtttct
      721 attggcgata ctgttaaagt taaagttcgt tcagttgaac aagattctga acgtgtgtca
      781 ttatcaatta aagatacatt accaagtcca tttgaaacaa ttcaagagaa atatagtgaa
      841 ggcgacattg ttgaaggtaa agtaatgcgc ttagcttcat ttggtgcatt tgttgaaatc
      901 agcagtggct tacaaggcct tgtgcatatt tcagaaatta gccataaaca tatcggtaca
      961 cctggcgaag ttcttgaacc aggtcaaact gttcaagtta aaattttagg tattaatcct
     1021 gaagaagaac gtatttcact atcaattaaa gcagcaaatc ctgacgaaga aacggaagaa
     1081 gcttctgagg aaacaacaca gcactataca caacctgctg atgaaaacga aaacaaccca
     1141 actttaggtg acgttttcgg tgataagttg aaagacttaa atttataatc tatttcgaac
     1201 taaggttatt tcacgtaacc ttagttcttt tattacgaaa tttcgcccat caaacttgat
     1261 taccgcctta tcggtaccac ttctcgaact tttttcatac ttatcccgat accaaatcca
     1321 cttatattac cgcattgcat ttttaacgca aaagtcaaaa cccatctttc taaccctatt
     1381 caaataaata aaaatgtatt cctacacttt gtaaggggat acttttcacc aatgcttttg
     1441 ttcgctacac ttcacgtgat ataataacgt tgttatgtat cgtacattgc gaaatatact
     1501 tgcacagact gatatattta atatttaagt tattcataga gaggaagaac aagcatgacg
     1561 aaacctgtag ttgctatcgt ggggcgtcct aacgtaggaa aatctacaat ttttaaccgc
     1621 atcgtcggag aacgtgtatc tattgttgaa gatacacctg gtgtgacgcg tgaccgtatt
     1681 tattcaagcg gtgaatggct cacacatgaa tttaatgtga ttgatacagg tggtatcgag
     1741 atcggagacg caccattcca aactcaaatt cgcgcacaag ctgaaatcgc aattgacgaa
     1801 gctgatgtta tcatattcat ggttaatgta cgtgaagggg tcacgcaaaa tgatgaactt
     1861 gtggctcaaa tactttataa atctaaaaaa cctgttgtat tagctgttaa taaagtcgat
     1921 aatccagaca tgcgtaatga tatttatgat ttctattcac tcggttttgg agaacctttc
     1981 ccactttcgg gctcacacgg tctaggttta ggggacttat tagaagaggt cgcaaaacac
     2041 tttaaaaaag atacttcaga tccatatgac gatgatacaa ttcgtttgtc attaatcggt
     2101 cgacctaatg tagggaaatc aagtttgatc aatgccattc taggcgaaga acgcgttatc
     2161 gtatctaata ttgctggtac aactagagat gccatcgata ccgtatatag ctatgaaggc
     2221 caagattatg tacttattga tacagcgggt atgcgtaaaa aggggaaagt ttatgaatca
     2281 actgaaaagt actccgtatt acgtgcattg aaagccattg aacgctccaa tgtcgttctt
     2341 gttgtattag atgcagaaca aggcattatt gaacaagata aacgtgttgc tggatatgcc
     2401 catgaagaag gaaaagcgat tgtgatcgtt gttaacaaat gggatacttt agaaaaagat
     2461 agcaatacga tgaaaaagtt tatggatgag gtacgtaaaa acttccaatt tttagattat
     2521 gcacaaatcg ctttcgtatc agcaaaagaa aaaatgcgtt tacgtacact tttcccatta
     2581 attaacgaag cgagcgaaaa tcataaaaaa cgtgttcaaa gttcaacatt gaatgaagtg
     2641 atcacggatg ccattgcaat gaatcctacg ccgacggata aaggccgtcg actgaatatt
     2701 ttttatgcga cacaagttgc gattgaaccg ccgacgtttg ttgtctttgt gaatgacgtc
     2761 gaactgatgc atttctcata taaacgttat cttgaaaatc aaattagaca agcatttgga
     2821 tttgaaggca caccggtaca catcattgca cgcaaacgaa attagatgga ggggataaac
     2881 atgacgaaca ttacagtgtt tggtacagga agttttggta ctgcattggc taatgtgctt
     2941 gcagacaatg gccacaacac attaatgtgg ggtaaaacat caacaacaat agacgaaatc
     3001 aaccatgaac atacaaatca taattattta aaaggggtta cgcttaattc gacaattcaa
     3061 gcgacaacag atattcagac cgctattgac cattcagata tttatttaat cgcactgcca
     3121 acaaaagcga ttagagaggt catgtcgcaa gtcaatcaat tgcttatttc aaaaaaatct
     3181 tttattcatg ttactaaagg gattgagaat gcaacattta agcgtgtttc agaaatgttg
     3241 gaagactcca tttcaccaga atataacgca ggcattggcg tactttctgg tccaagtcat
     3301 gccgaagaag tggttatcaa acaaccgacc accgtatcag cagcttcaag taatccagaa
     3361 ttacgcaaat tgatacaaga tttattcatg acggattatt tacgtgtgta tacaaatgat
     3421 gatcttgtcg gcgtagaact cggtggtgca cttaaaaata ttattgctat cgcgagcggt
     3481 gtccttgccg gtatgggctt tggtgataat gcaaaagctg ctttaatgac acgtggttta
     3541 gcagaaatta cacgtttagg cgttaaactt ggtgccgatc cgctcacatt ccaaggttta
     3601 ggtggcattg gtgatttaat tgtaacgtgt acttctacac attcgagaaa ctactctctc
     3661 ggttaccaac ttggtaaagg gaaaagttta gatgaaatca tgaatcatat gaatatggtc
     3721 gctgaagggg tgtacacaac tgaatcggtg tacaatcttt ctaaaaaaga aaatgttgaa
     3781 atgccaatta ctgaagcatt gtatcatgtt ttattcgaaa atcaacctgt tgaacaggca
     3841 gtcaaaacgt taatgggacg tacaaaaaaa tcggaataaa gatagaaatt gaccattttc
     3901 atgacaaaat tataaaaaaa tcgacaaaaa gcgattaaat caacgttttt cttgtataaa
     3961 tcgttgcagt cttgcattcg cttgtgttaa agtcatacca taatggtaat tgaattatca
     4021 ttacataacc tttgaggagg tgaattgaca tgaacaaaac tgacttaatt aacgctgttg
     4081 cagaacaagc tgatttaact aaaaaagaag ctggtttagc tgttgatgct gtttttgaag
     4141 caattcaaac atcattagct aaaggtgaaa aagtacaatt aattggtttc ggtaactttg
     4201 aggtacgtga gcgtgccgca cgtaaaggtc gcaaccctca aacaggtaaa gaaattgaca
     4261 tccctgcaag caaagttcca gctttcaaag caggtaaagc attaaaagat gctgtgaaat
     4321 aattcaatta ttaggaaagg ggctgggaca caatggtgtt ttccagcctt tcctatgact
     4381 aatgccactc ataacttcgt cattttaaga ctgttcaaac gatttgaatt caaacat
//
LOCUS       DANHOL010000166         4375 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.168, whole genome shotgun sequence.
ACCESSION   DANHOL010000166 DANHOL010000000
VERSION     DANHOL010000166.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 4375)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4375)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4375
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.168"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(116..592)
                     /gene="greA"
                     /locus_tag="PTC08_002116"
     CDS             complement(116..592)
                     /gene="greA"
                     /locus_tag="PTC08_002116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HDK5683588.1"
                     /translation="MENQKQYPMTQEGYEKLEKELEELKTVKRPEVVEKIKVARSFGD
                     LSENSEYDAAKDEQGFIEQDIQRIETMLRHALIIEDTGDNHVVQIGKTVTFVELPGND
                     EESYQIVGSAESDAFNGKISNESPMAQALIGKQVDDEVRVPLPNGGEMNVKIVDIH"
     gene            complement(619..1242)
                     /gene="udk"
                     /locus_tag="PTC08_002117"
     CDS             complement(619..1242)
                     /gene="udk"
                     /locus_tag="PTC08_002117"
                     /EC_number="2.7.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uridine kinase"
                     /protein_id="HDK5683589.1"
                     /translation="MATTIIGIAGGSGSGKTSVTNKIMNNLEGHSVALIEQDYYYKDQ
                     SHLTFEQRLKTNYDHPFAFDNDLLIQNLKSLQSGQSVEVPTYDYTNHTRSDKTIAFQP
                     KDVIIVEGIFALENEELRNMMDVKIYVDTDADLRILRRLVRDTKERGRTMESVIDQYL
                     TVVRPMHNQFIEPTKKFADIIIPEGGSNKVAIDIMTTKIQALVRKKD"
     gene            complement(1246..2511)
                     /locus_tag="PTC08_002118"
     CDS             complement(1246..2511)
                     /locus_tag="PTC08_002118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="U32 family peptidase"
                     /protein_id="HDK5683590.1"
                     /translation="MKVLEEVKPATQAKMKKPELLAPAGNLEKLKIAVHYGADAVFIG
                     GQEYGLRSNADNFTMDEIREGVEFANRYGAKIYVTTNIIAHDENMEGLDDYLEQLEAT
                     GATGIIVADPLIIETCKRVAPKLEIHLSTQQSLSNYKAVEYWKEEGLDRVVLARETGA
                     MEMQEIKDKVDIEIEAFIHGAMCIAYSGRCTLSNHMTARDSNRGGCCQSCRWDYDLLT
                     VDNDGELDVYYEDGNAVPFAMSPRDLKLIESIPNMMDLGIDSLKIEGRMKSIHYIATV
                     VSVYRKVIDAYAADPENFKIKPEWLFELDKCANRDTAPAFFKGTPGYEEQMFGNESSK
                     KAPFDFIGLVLDYDKDSQMATIQQRNHFKPGQEVEFFGPEIQTFKQVVDKIYDEEGNE
                     LDAARHPLQIVQIKVDQPIYPNNMMRKEV"
     gene            complement(2530..3459)
                     /locus_tag="PTC08_002119"
     CDS             complement(2530..3459)
                     /locus_tag="PTC08_002119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="U32 family peptidase"
                     /protein_id="HDK5683591.1"
                     /translation="MTELLVTPKSLSHIETLIEKGADAFVIGEEKFGLRLAGEFNREE
                     MKKAVEIIHHAGKKAYAAVNGIFHNYHIPALEDYIAFLHEIRVDRIIFGDPAVVMIVK
                     QQENPIPLNWNAETLVTNHFQCNYWGRRGAKRAVLARELSLEEILNIKENSDVEIEVQ
                     VHGMTCMFQSKRMLLGNYYTFQDRQMKIQRNEAATDSQLLLYDEERDNKYPVFEDYNG
                     THIMSPNDICLIEELEPLFEAGIDSLKIDGVLQTEEYINVATEQYREAIDLYEEDPDT
                     YEDEKFMLVDPIEAIQPEHRPFDEGFYYKQTVY"
     gene            complement(3452..4096)
                     /locus_tag="PTC08_002120"
     CDS             complement(3452..4096)
                     /locus_tag="PTC08_002120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-methyltransferase"
                     /protein_id="HDK5683592.1"
                     /translation="MEDKNQSYLLSLKQYDNDIDQLRNYAETHQVPIVDQLSLDLIQQ
                     IIRLHQPKEILEVGSAIGYSAMQFASVDKSINVTTIERNEEMIQQAKTNIRQYGYADQ
                     IRLIEADATEAFELVNDRIYDMIFIDAAKAQSQRFFELYCPLLREKGVMITDNILYHG
                     FVADIDVVRSRNVKQMVKKVQRYNQWLSQQQGFTTNFIHMDDGLAISIKESKHD"
BASE COUNT         1227 a          905 c          685 g         1558 t
ORIGIN      
        1 aaataagctg gggtacaatg aagttttccc agccgctttt cttccgatgc ctcacatcaa
       61 atatttaatt atataatgag atgatgcttg tacgcataca gatttggcgc attgattaat
      121 gaatatctac aattttaaca ttcatttcgc caccatttgg aagaggaaca cgtacttcgt
      181 catctacttg tttaccaata agtgcttgtg ccattggaga ttcgtttgaa atcttgccat
      241 taaatgcatc agattcagct gagcccacga tttgataaga ctcttcgtcg ttacctggaa
      301 gctcaacgaa tgttaccgtt ttaccaattt ggacaacatg gttatcgcca gtatcttcaa
      361 tgattaaagc atgacgtaac attgtttcaa tacgttgaat atcctgctcg ataaaacctt
      421 gttcatcttt cgctgcatcg tactctgagt tctcagataa gtcaccaaaa ctacgtgcaa
      481 ctttaatttt ttcaaccact tcagggcgtt tgactgtttt taattcttct aattcttttt
      541 caagtttttc gtatccttct tgcgtcattg gatattgttt ttggttttcc attgtctgca
      601 tcttccttta actatgattt aatctttttt acgtacaagt gcttgaatct tagttgtcat
      661 gatgtcaata gcaactttat ttgaaccacc ttcaggaata ataatatccg caaatttttt
      721 cgttggttca ataaattggt tatgcattgg cctcacaaca gtaagatact gatcaattac
      781 agattccatt gtacgaccac gctctttagt atctctcaca agacggcgca aaattcttaa
      841 atctgcatca gtgtctacgt atatcttaac atccatcata ttgcgcaatt cttcattctc
      901 gagcgcaaat ataccttcta cgataataac atctttaggt tgaaatgcaa tcgttttatc
      961 actgcgtgta tgatttgtat agtcataagt cggtacttct acactttgac ctgactgtaa
     1021 tgatttaaga ttttggatta acaaatcatt atcaaacgca aatggatgat cataatttgt
     1081 tttaagacgt tgttcaaatg tcagatgtga ttggtctttg taataatagt cttgttcaat
     1141 gagtgcaaca ctatgccctt ctaaattatt cattatttta tttgtcacag atgttttacc
     1201 cgaaccagag cctccagcaa taccaatgat cgttgttgcc attctttaaa cttcctttct
     1261 catcatgttg tttggataaa taggctggtc aactttgatt tgcacgattt gtaatgggtg
     1321 tcgtgccgca tcaagttcat ttccttcttc atcataaatc ttatcgacga cttgtttaaa
     1381 ggtttgaatt tcaggtccga aaaactctac ttcttgacct ggtttaaagt gatttctttg
     1441 ttgtattgtc gccatttgac tgtctttatc atagtctaat actaagccga taaagtcaaa
     1501 tggtgctttt ttacttgatt catttccaaa catttgttct tcataacctg gtgtcccttt
     1561 gaaaaatgcg ggtgcggtat cgcggttcgc acatttatct aattcaaaga gccattccgg
     1621 tttaattttg aaattttctg ggtctgcagc atacgcatca atcactttac gataaactga
     1681 aacgactgtt gcaatatagt gaatagattt cattcggcct tcgattttaa gtgagtcaat
     1741 tcctaaatcc atcatgttcg gaattgattc aattaatttt aaatcacgtg gactcattgc
     1801 aaatggcacg gcattaccat cttcataata gacatctagt tcgccgtcat tatcaactgt
     1861 taataaatca taatcccaac gacaactttg gcaacaaccc ccacggttag aatcacgtgc
     1921 tgtcatatgg ttactcaatg tacaacggcc tgaatacgca atacacatag caccgtgaat
     1981 gaaagcttca atttcgatat ccactttatc tttaatttct tgcatttcca tcgcacctgt
     2041 ttcacgggca agtacgacac ggtctaagcc ttcttctttc caatattcta cggctttata
     2101 gttacttaat gattgctgtg tagataaatg gatttctaac ttcggtgcaa cacgtttaca
     2161 cgtttcaata attaatgggt ctgctacgat aatacctgtt gcacctgttg cttctaattg
     2221 ctctaaatag tcatctagac cctccatatt ttcatcatgt gcaataatat ttgtcgttac
     2281 ataaatttta gcaccgtaac gatttgcaaa ttcaacacct tcacgaattt cgtccatagt
     2341 aaagttgtcc gcatttgaac gcaacccata ctcttgaccg ccgatgaata cagcatctgc
     2401 accataatga acggcgattt ttaacttttc taaattacca gcaggcgcaa gtaactcagg
     2461 ctttttcatt ttcgcttgcg ttgctggttt aacttcttca agtaccttca tccatgctct
     2521 ctcctatctt tagtatactg tttgcttgta atagaatcct tcatcaaacg gtcgatgctc
     2581 tggttgtatt gcttcaattg ggtctacaag cataaatttt tcatcttcat acgtatctgg
     2641 atcttcttca tataaatcta tcgcttcacg atattgctca gtcgctacat tgatatattc
     2701 ttctgtttgg agtaccccat caattttcaa gctatcgatt cccgcttcaa atagtggttc
     2761 taactcctca attaaacaaa tatcgttcgg cgacataata tgcgtaccat tataatcttc
     2821 aaaaacaggg tatttattat cacgctcttc atcgtaaagt aataattgac tgtccgttgc
     2881 tgcttcatta cgttgaattt tcatttgacg gtcttggaat gtatagtagt ttcctaatag
     2941 catacgtttc gattggaaca tacacgtcat accatggacc tgcacttcaa tctcaacatc
     3001 actattttct ttgatgttca aaatttcttc taaacttaac tcccgcgcaa gcaccgctct
     3061 tttcgcacca cgtcttcccc aataattaca ttggaagtgg ttcgtaacga gtgtttctgc
     3121 attccagttt aaaggtatag ggttttcttg ttgctttaca atcatcacta ctgcaggatc
     3181 accaaaaata atacgatcta ctctaatttc atgcaaaaac gcgatataat cttcaagcgc
     3241 tggaatatga tagttatgga aaataccatt tactgcagcg tatgcttttt taccagcatg
     3301 atgaatgatt tcaaccgctt ttttcatctc ttctcgattg aattccccgg ctaatcttaa
     3361 gccaaacttt tcttcaccaa taacaaatgc atctgctccc ttttcaatta aggtttcgat
     3421 gtgacttaaa gacttcggtg tcactaataa ctcagtcatg tttactctcc tttattgata
     3481 tcgctagccc atcatccata tgaataaaat tcgttgtaaa accttgttgt tgacttaacc
     3541 attgattgta tcgttgtacc ttttttacca tttgtttgac attgcgactt cttactacat
     3601 cgatgtccgc aacgaaacca tggtataaaa tattatctgt tatcataaca cctttttcgc
     3661 gtaacaaagg acaataaagc tcaaaaaagc gttgtgattg tgccttagca gcatcgataa
     3721 aaatcatatc ataaatacgg tcattcacga gttcaaatgc ttctgtcgca tctgcttcaa
     3781 ttaaacgaat ttgatccgca taaccatatt gacgaatatt tgttttcgct tgttgaatca
     3841 tttcttcatt gcgttcaatg gtcgtcacgt taatcgattt atccactgaa gcgaattgca
     3901 tcgcactgta accaattgca ctaccgacct ctaaaatttc tttcggctga tgtagacgaa
     3961 tgatttgttg aatgagatct aaagaaagct gatcgacaat aggcacttga tgtgtctcgg
     4021 cgtagttacg caattggtcg atgtcattgt catattgttt taagcttaaa agatatgatt
     4081 gatttttatc ttccatgtat tcttgacttc ctttttatat tctaaaaatc atcaaaaaat
     4141 aaaccagcca agttggactg atttaacttt gatgtctgta tatgcatcac ggaaataatg
     4201 ttcgtttatc cgttctttca tagcatttta aaatgacttc tatacatttt atcacataat
     4261 cgcttgactg ataagctcca atcatcattt tagtgaaaga tttcatggaa ttcaataccc
     4321 cttatttata atagtttagt aataaaggtg acgaaacgaa gttatattac agatt
//
LOCUS       DANHOL010000167         4362 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.169, whole genome shotgun sequence.
ACCESSION   DANHOL010000167 DANHOL010000000
VERSION     DANHOL010000167.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 4362)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4362)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4362
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.169"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(<1..502)
                     /locus_tag="PTC08_002121"
     CDS             complement(<1..502)
                     /locus_tag="PTC08_002121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal transduction protein TRAP"
                     /protein_id="HDK5683593.1"
                     /translation="MKFYITYGTYGYLNQIQLNNENHDLFIFSGNDQSVMIEETDDET
                     IFQQPKKFRVLTRFGSISSDDFHALISIPTTEDHKYQLEKKLESYLPHLDEYDGFNTY
                     RLLKPLQSNIYKVFLGFSSRKAYEDYKKSSAFREHFSKEAVRPLAGSSSAHASYLEQF
                     FYPISEE"
     gene            814..1848
                     /gene="hemE"
                     /locus_tag="PTC08_002122"
     CDS             814..1848
                     /gene="hemE"
                     /locus_tag="PTC08_002122"
                     /EC_number="4.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase"
                     /protein_id="HDK5683594.1"
                     /translation="MGTTKNDTILRAIKGEVVSHTPVWFMRQAGRSQPEYRKLKEKYS
                     LFDITHQPELCAYVTALPVEQYDTDAAVLYKDIMTPLKSIGVDVDIKSGIGPVIANPI
                     RQMSDVEALGQIDPERDVPYVLDTIKLLTEEKLNVPLIGFTGAPFTLASYMIEGGPSK
                     NYNQTKALMYSDEATWFKLMDVLTDMSIRYVGAQVKAGAQLIQVFDSWVGALNQPDYD
                     YYIKPCMEKLITGIKAYNVPVIMFGVGASHLIESWNALPIDVLGLDWRTSINEARAKG
                     VSKALQGNLDPSILLAPWEVIEARLKPILDQGVAHGRHIFNLGHGVFPEVKPETLKHV
                     AQFVHDYTKR"
     gene            1886..2818
                     /gene="hemH"
                     /locus_tag="PTC08_002123"
     CDS             1886..2818
                     /gene="hemH"
                     /locus_tag="PTC08_002123"
                     /EC_number="4.98.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrochelatase"
                     /protein_id="HDK5683595.1"
                     /translation="MKKQIGLLVMAYGTPYQKSDIEPYYTDIRHGRKPSEEELNDLIS
                     RYEAIGGLSPLAGTTERQADAIQKALNETYEDVEFKLYIGLKHIHPFIEDAVTQMNED
                     GIKEAVTVVLAPHFSNFSIASYNRRAKDKADTFGIQLHHVQHYYQQQQFIDYWTMRVN
                     ETLENIPQEEHAKTVLVVSAHSLPEKMIKESNDPYPFELEDTARLIQEQSAIEHVAVG
                     WQSEGNTGTPWLGPDVQDLTRDLFEQEGYQHFIYTPVGFVAEHLEVLYDNDYECKVVC
                     DAVGATYHRPPMPDTHPLFIGAIVSEITKIFPKA"
     gene            2824..4227
                     /locus_tag="PTC08_002124"
     CDS             2824..4227
                     /locus_tag="PTC08_002124"
                     /EC_number="1.3.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019164996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protoporphyrinogen oxidase"
                     /protein_id="HDK5683596.1"
                     /translation="MTNVAIIGAGITGLSSAYFIKQKYPHVNVTIYEATDRPGGKIKT
                     VHHDGYTIELGPESYLGRKTIMTEVAKAVGMTDDDIVTNETGQSYIFANDTLYPIPGG
                     AILGVPTDIKPFMSTKLISMKGKLRALKDLTIKPIEMENEDMSVGEFFRTRLGDEVLE
                     NLIEPLLSGIYGTDIDALSLMSTFPNFKALEEEHGSIIKGMQHVKKERQQQAQHNQQG
                     PQGQFKQFRHGLNDFVNKLEQWLKAHDVTFHYETPVHDLIGTQKGYYVELNDESRSFY
                     DGVIVATPHQVFREWFSTDPMFDYFSKLEASSVATIVFAFDEANIENTSDGTGFVVAR
                     TSATDITACTWTTKKWPHTTPEGKVLIRAYIGKQGDNIVNEKTDEELVAIAKNDLQQM
                     MTFHGEPDFTIVNKMPYASPQYHVGHIARIKAIQQHICDNYQHLQITGAPFEAVGLPD
                     CIRQAETAVKQLLSRIG"
BASE COUNT         1459 a          739 c          899 g         1265 t
ORIGIN      
        1 cctcttctga aattggataa aagaattgtt ctaagtatga agcgtgtgca cttgatgatc
       61 ctgcaagtgg tcgcacagct tctttagaaa aatgttcacg gaatgcagaa gattttttgt
      121 aatcttcata ggctttacgt gatgaaaatc ctaaaaatac tttataaata ttgctttgta
      181 aaggttttaa taatcggtaa gtattgaaac catcatattc gtctaaatga ggaaggtaac
      241 tctctagttt cttttccaac tgatatttat gatcttcagt cgtcggtatt gatattaatg
      301 catgaaaatc atcacttgaa attgaaccaa agcgagttaa gacgcgaaat tttttaggtt
      361 gttgaaaaat agtctcgtcg tctgtctcct caatcatgac agattggtcg tttccagaaa
      421 aaataaataa gtcatggttt tcgttgttga gttggatttg atttaaatat ccgtaagtac
      481 catatgtgat ataaaatttc atggtgttct cctccttgtt ttcattcatt ataagttttt
      541 ctcgcttaaa tcaccactaa aatatactta attctcactt aaattaagtg actatttttg
      601 tacgattaat tcatgtcgca cgattgataa aatactcgct aaatatgcat cgattaagat
      661 atgaaaacta tttcaaaata aaaaagtttc atggttgaaa tcacttagtt aaatgtacat
      721 tttaaatttt tatgacattt gagccagata ctgatgttag aggggcttga tatgatatat
      781 taatgaagaa tgacgttgtt taaggaggaa catatgggta cgacaaaaaa cgatacaatt
      841 ttgcgtgcga ttaaaggaga agtagtctct catacccctg tatggtttat gaggcaggca
      901 ggacgttcac aaccagaata tcgcaaatta aaagaaaaat actcactatt cgacattaca
      961 catcaaccag aattatgtgc ttatgtcact gcattaccgg ttgaacaata cgacacagat
     1021 gcagcagtat tatataaaga tattatgaca ccattaaaat caatcggtgt agatgttgat
     1081 attaaatctg gcattggacc cgtcattgct aatccgattc gacaaatgtc tgatgtggaa
     1141 gcattaggtc aaatcgatcc agagcgcgat gtcccttatg ttttagacac aatcaaatta
     1201 ttgactgaag aaaaattaaa tgtcccattg attggcttta caggtgcacc atttacttta
     1261 gccagttaca tgattgaagg tggcccatct aaaaactata atcagacgaa agcactgatg
     1321 tatagtgatg aagcgacatg gtttaaatta atggacgtgt tgacagacat gtcgattcga
     1381 tacgttggtg ctcaagtgaa agcaggtgca cagctcattc aagtgtttga ttcatgggta
     1441 ggggctttga atcaaccgga ctatgattac tatattaagc catgtatgga aaaattgatc
     1501 acagggatta aagcatacaa cgtccctgtc ataatgtttg gtgtgggggc aagccattta
     1561 atagagtcat ggaatgcttt acctatcgat gtcttagggc tagattggcg tacatcgatt
     1621 aatgaagcac gtgccaaagg ggtttcaaaa gcattacaag gcaatttaga cccaagcatt
     1681 ttattggcac cgtgggaagt gattgaagca cgcttgaaac cgattttaga tcaaggggtg
     1741 gctcacggac gacacatttt caatttaggt cacggggtct ttcctgaagt gaaaccggaa
     1801 acgttaaaac acgtggctca atttgtacat gactatacaa aacgttaagt tgcaagaatc
     1861 gagtatataa aggacggatt aaaagatgaa aaaacaaata ggattattag tgatggcata
     1921 cgggacacct taccaaaaga gtgacatcga accatattat accgatatta gacacggtag
     1981 aaagccatcc gaagaagagt tgaatgatct catttcacgc tatgaggcga ttggggggct
     2041 ttcgccgtta gcaggaacga ctgaacgtca agctgatgca attcagaagg cgctaaatga
     2101 gacttatgaa gatgttgaat tcaagttgta tatcggatta aaacatattc acccatttat
     2161 tgaagatgct gtgacacaaa tgaatgaaga tggtattaaa gaagcagtaa cagtcgtttt
     2221 agcaccgcat ttttctaatt tctcaatagc ttcatataat cgtcgtgcta aagacaaagc
     2281 cgacacgttt ggcattcagt tgcatcatgt tcaacattat tatcaacagc aacaatttat
     2341 cgattactgg acgatgcgtg tgaatgaaac tttagaaaat attccacaag aagaacacgc
     2401 aaaaactgtt ctcgtcgtat cagcacacag cttgcctgaa aaaatgatta aagaaagtaa
     2461 tgatccatat ccatttgaat tagaagacac agcgcgttta attcaagaac agtcagcaat
     2521 tgaacatgtt gcagtgggtt ggcaatcaga gggtaacaca ggtacaccgt ggttagggcc
     2581 tgatgttcaa gatttaacac gtgacttatt cgaacaagaa gggtatcaac atttcattta
     2641 tacaccagtt ggttttgttg cagaacattt agaagtgtta tacgacaatg attacgaatg
     2701 taaagtggtt tgtgatgcag tcggcgcaac atatcatcgc ccacctatgc ctgacacaca
     2761 tccattgttt atcggtgcaa ttgtgagcga aattacaaaa attttcccga aagcgtgaga
     2821 aacatgacaa atgtagcaat cattggtgcg ggtattacag gtttatcaag tgcatacttt
     2881 attaaacaaa agtatccgca tgtgaatgta acgatttatg aagcaacaga tcgacctggt
     2941 ggcaaaatta aaacggtaca ccatgatggc tatacgattg aacttggccc cgaatcttat
     3001 ttaggtcgca aaacgattat gactgaagtg gcaaaagcag tagggatgac agatgatgat
     3061 atcgtgacaa atgaaacggg tcaatcgtat atttttgcca atgatacatt atatccgatt
     3121 ccaggcggcg cgattttagg tgtaccgact gacattaaac catttatgtc aacaaaactc
     3181 atctcaatga aagggaaatt gcgcgcatta aaagatttga cgattaaacc gattgagatg
     3241 gaaaatgaag acatgtcggt aggtgaattt tttaggacac gtctcggtga cgaagtactt
     3301 gaaaatttaa ttgaaccgtt actgagtggt atttatggta cagacattga tgcgttgagt
     3361 ttaatgagta cgtttccgaa cttcaaagca ttagaggaag aacacggtag tatcattaaa
     3421 gggatgcaac atgtcaaaaa agagcgtcaa caacaagcac aacataatca acaaggacca
     3481 caaggacaat ttaagcaatt cagacatggt ttgaatgact ttgtgaacaa acttgaacaa
     3541 tggcttaaag cgcatgatgt gacatttcat tatgaaacgc ccgtgcatga tttaattggc
     3601 acacaaaagg ggtattacgt tgagttaaat gacgaatcgc gttcatttta tgatggtgtc
     3661 attgtcgcaa cgccacatca agtgtttaga gagtggttta gcactgatcc gatgtttgat
     3721 tatttttcga aactagaagc atcatctgtc gctacgattg tctttgcatt tgatgaagcc
     3781 aatattgaaa atacgtctga tggtacagga tttgtggttg cgagaacgag tgcgacggat
     3841 attactgcgt gtacgtggac aaccaaaaaa tggccacata cgacaccaga aggcaaagtc
     3901 ctcattcgtg catatatcgg caaacaaggt gataacatcg ttaatgaaaa gacagatgaa
     3961 gaactggtag caatcgctaa aaatgactta caacaaatga tgacatttca cggcgaacct
     4021 gactttacaa tcgtaaataa aatgccgtat gcgagtcctc aatatcacgt cggtcatatt
     4081 gctcgaatta aagcgataca acaacatatt tgtgacaatt atcaacattt acaaattaca
     4141 ggtgcaccgt ttgaagcggt tggattgcca gactgtattc gacaagcaga aacagcagtt
     4201 aaacaattgt tgtcacgaat tggataaatg ataagaaaaa agctgcgaga tgttgcagct
     4261 tttttcattt tcttgctgat tgtgactaac cacatgattt aattatttat aaaaacattc
     4321 aaaggtcttt ctgtgtcatt taactcaaat gcgaacttaa tt
//
LOCUS       DANHOL010000168         4266 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.170, whole genome shotgun sequence.
ACCESSION   DANHOL010000168 DANHOL010000000
VERSION     DANHOL010000168.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 4266)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4266)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4266
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.170"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(459..1454)
                     /gene="add"
                     /locus_tag="PTC08_002125"
     CDS             complement(459..1454)
                     /gene="add"
                     /locus_tag="PTC08_002125"
                     /EC_number="3.5.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosine deaminase"
                     /protein_id="HDK5683597.1"
                     /translation="MNAELKGIPKLELHCHLDGSVSLEYLEKQSQQQGIPIQMDKVTV
                     DQHCQSLAEYLQSFDEILKVMQTRISLIDAVVDVAEQAVHDGVKYIEIRFAPAFHQGQ
                     GLEIDDILTAVCKGASLAEHTFGIKVRMLVCGMKHHSDEMNQAIFDSLRDDETLEAYI
                     VGVDLAGDEAASPTTEHEALIQYAQQQGLNITLHAGECGCAKNVYDAVRFGAQRIGHG
                     VAALQDEDVLATVKAKDVLLEFCPKSNLQTKAIKSLDSLDLQRLLKENIAFLINTDNR
                     TVTQTNLLDEYALLLEHKLLNWEDIVRINFKAIDYTFANSSTKQWLKQQFEVEAH"
     gene            1847..3838
                     /locus_tag="PTC08_002126"
     CDS             1847..3838
                     /locus_tag="PTC08_002126"
                     /EC_number="1.11.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019469893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catalase"
                     /protein_id="HDK5683598.1"
                     /translation="MDNKKLEQLKKDQKNNDGKAMTTNNGVKVSEDENTLTVGERGPS
                     LLEDFHFREKIMHFDHERIPERIVHARGFGAHGEFQVYKDLSAYTSADFLTHPEKTTP
                     VFVRFSTVQGSKGSPDTVRDVRGFATKFYTDEGIFDLVGNNIPVFFIQDAIKFPDLIH
                     AVKPEPHNEMPQGGSAHDTFWDFFAQNPESTHTAFWAMSDRGIPKNFRQMEGFGVHTF
                     RLVNREGQSYFVKFHWKPLHGLESLVWDEAQILSGKDIDFHRKDLYESIEKGDYPEWE
                     LGLQIIRPEQEFDFDFDILDPTKIWPEDQVPVEIVGKMTLNRNVSNVFDETEQAAFHP
                     GHIVPGIDFSNDPLLQGRLFSYTDTQISRLGGPNFNQIPINRPVNEVHNNQRDAMHQM
                     NVHQGQTAYHKNALNNNDPHTTPREEGGFEHYQEKVEGHKIRKRSSSFEDYYSQAKLY
                     LNSLTPAEYDHMVAGFSFEIGMCKSVMVKQNAVNQLNKVDRQLAEAVAANVGVSVPEE
                     NEEVQSTAKDSQLTMEKFDIPLPGHSVAVLVSGEISEETLKSYAKVFAENKLNYAFVG
                     KQPRAIDEDFGITETYDTAHPTLFDSAIVLSDGSDLLPEAEEFAEMTYKHKKPLVVNE
                     KAANQLGRSKIKLNAPGVFTSDEPATIVKAFDRVRYWDR"
BASE COUNT         1368 a          845 c          721 g         1332 t
ORIGIN      
        1 atggctatca ttatcttaaa aactatataa accctcttca tttcctattt gtactctttg
       61 aatcaacata tatttattca agaggcataa aacacttttg tgacattcac aaaatagatg
      121 acttagaaac cggagatggg acaaaaaact tgattgtttg acttgatatc ttttttacca
      181 atccccctca ttaacagcct tttaaattat catagttgcc atcatggact cagatttccc
      241 aggagttgac cctccatcta attcggctta attgaagtgt aaacactaga ttgctatcga
      301 tttggattga ctgggtcaac taatccctca gaagtctcag ccatttgagt aattgaatat
      361 caaaggcagt gaatcaatga cgaccaagta atgagtattt taagtctctc aaaacaaata
      421 atgttacttt tccaccttaa aaagctgtca ttaatctact aatgtgcttc tacttcaaat
      481 tgttgcttta accattgttt agttgaacta ttagcaaaag tgtaatcaat cgccttaaaa
      541 ttaatgcgta caatatcttc ccagtttaac aatttgtgct ctaacaacag cgcatattca
      601 tctaataaat tcgtttgtgt tacggtacga ttatctgtat tgattaaaaa ggcgatgttt
      661 tcttttaata gacgttgtag gtctaagcta tctaatgatt taatagcttt cgtttgtaag
      721 ttacttttcg ggcaaaattc gagtaagacg tctttggctt tcacagttgc cagtacatcc
      781 tcatcttgta gagccgctac accatgacca atacgttgtg caccaaatcg tactgcatca
      841 tacacatttt tagcacaacc acattctcca gcatgtaacg taatgttcaa tccttgttgt
      901 tgcgcatatt gaatcaatgc ttcatgttcc gtggtcggag atgccgcttc atcaccagct
      961 aaatccacac ctacaatata cgcttctaaa gtttcatcat cgcgaagact gtcgaaaatc
     1021 gcttggttca tttcgtccga atgatgtttc atcccacata ctagcattct tactttaatg
     1081 ccaaaagtgt gttcagccaa agacgcacct ttgcacacag ctgttaaaat gtcgtcaatt
     1141 tccaatcctt gtccttgatg aaatgcgggt gcaaatcgaa tttcaatata ttttacacca
     1201 tcatgtactg cttgttctgc aacatcaacg acagcgtcaa tcaaacttat acgtgtctgc
     1261 atcactttta aaatttcgtc aaatgactgt agatattccg ctaaactttg acaatgttga
     1321 tccactgtca ctttgtccat ctgaataggt ataccttgct gttggctttg cttttcaagg
     1381 tattccaagc taaccgagcc atccaaatga caatgcaatt caagcttggg tatccctttt
     1441 aattccgcat tcataatatc ctcttttcaa tatcttttta atttctaatt ttactgtgat
     1501 tatattgatt gtcaatacat tttttaaaat gtcatgattg tctaattcat ccactattgc
     1561 tgacgtgaat ttcaatgtct aatgtcagtg ttttccaagc attcatccaa catttcccat
     1621 aagatggttc ataagcatca atctctttaa tatcatcttt attcaacctc gaaatcattg
     1681 taactaccta taacatgtga tggcctttac cgaacgtaac aacactctca ttcaatatat
     1741 ttattaatga gtatattaat aatactttag tgcaaaatgt ttctgttttt ttcgaaaagg
     1801 taataggtat attgttacag actacattac taaaggagcg ttggaaatgg ataataaaaa
     1861 gctagaacaa ttgaaaaaag accaaaaaaa caatgatggt aaagcaatga cgacgaataa
     1921 tggtgtcaaa gtgagtgagg atgaaaatac cttaactgtc ggcgaacgtg gtccaagctt
     1981 gctcgaagat ttccatttta gagaaaaaat catgcacttt gaccatgaac gtatccctga
     2041 aagaattgtt catgcgcggg gatttggtgc tcatggtgaa ttccaagttt ataaagattt
     2101 atcagcctac acctctgcag actttttaac tcatccagaa aaaacaaccc ctgtatttgt
     2161 aagattttcg actgtacaag gttctaaagg gtcaccagat acagtgagag atgtacgtgg
     2221 ttttgcgaca aaattctata ctgatgaggg aattttcgac cttgtaggta ataacattcc
     2281 agtattcttc attcaagatg cgattaagtt ccctgattta attcatgcgg ttaaacctga
     2341 gccacataat gaaatgccac aaggtggaag tgcccacgat actttttggg atttctttgc
     2401 gcaaaatcct gaatcaacac atacagcatt ctgggcgatg agtgaccgcg gtattccgaa
     2461 aaactttaga caaatggaag gattcggtgt tcataccttc cgcctcgtta accgcgaagg
     2521 tcagtcttac tttgtgaaat ttcattggaa gccattacac ggtttagaat cattggtttg
     2581 ggacgaagca caaattttat ctggtaaaga tatcgacttc caccgtaaag atttatatga
     2641 atctatcgaa aaaggtgact atccggaatg ggagttagga cttcaaatta ttcgtccaga
     2701 acaagaattc gactttgatt ttgatatttt agacccaaca aaaatttggc cagaagacca
     2761 agtcccagtc gaaattgtag gtaaaatgac gcttaatcgc aatgtgtcta acgtgtttga
     2821 cgaaacagaa caagcagcgt tccacccggg tcatatcgtt cctggcattg acttctcaaa
     2881 tgacccttta ttacaaggtc gcttattttc atatacagac acgcaaattt caagattggg
     2941 cggacctaat tttaaccaaa tcccaatcaa ccgtcctgtc aatgaagtac acaacaacca
     3001 acgtgacgcc atgcatcaaa tgaatgtgca tcaagggcaa acagcttacc ataaaaatgc
     3061 attaaacaat aacgaccctc acacaacacc gagagaggaa ggcggttttg aacattatca
     3121 agaaaaagta gaaggtcata aaattagaaa acgcagctca agttttgaag attattatag
     3181 ccaagcgaaa ttatatttaa acagcctaac acccgctgaa tatgatcata tggtagcagg
     3241 tttctcattt gaaattggca tgtgcaagtc tgtgatggtc aaacaaaatg ccgttaatca
     3301 attaaataaa gtggatcgtc aattagctga agcagttgcg gcaaatgttg gcgtttctgt
     3361 cccagaagag aatgaagaag tacaatctac agcgaaagac agtcaactca caatggaaaa
     3421 attcgatatt ccattaccag gacattccgt agctgtatta gtaagtgggg agattagcga
     3481 agagacacta aaatcttatg cgaaagtatt tgcagagaac aaactgaatt atgcattcgt
     3541 tggtaaacaa ccacgtgcca ttgacgaaga tttcggtatt actgaaacat acgacaccgc
     3601 acaccctaca ctattcgaca gtgcaattgt attatcagac ggctcagacc tattgccaga
     3661 agcagaagaa tttgcggaaa tgacgtataa acataaaaag ccattagtgg tcaatgaaaa
     3721 agccgcaaat caactcggtc gttcaaaaat caaactcaac gcgcccggtg ttttcacatc
     3781 agatgaaccc gctacgattg taaaagcatt tgatagagtg agatattggg accgctaaaa
     3841 tcatacagaa atcgaccccg taccctacaa atgataaggg acggggtttt atgattactt
     3901 gcctacattt tctgactttt accaatagtt atcttttatt ttttatgtta ttttaaacac
     3961 tcataattta tggatataga acagattcat tttttgcgtt tattgcaaat tcatccattt
     4021 ccttcttcca catcaataga attcaaactc tttagatttt caagtaactc atatcattat
     4081 ctagcacgcc tattctcgct agctttataa tgctattttc atttgctttc acttgaatat
     4141 cttctattgt actattccat atatcacggc aatattcagg catactcata aataactttt
     4201 gcatagctaa caaaaatgta atcaatcttt gttgataatg aaatttttga agtctattta
     4261 aatatt
//
LOCUS       DANHOL010000169         4224 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.171, whole genome shotgun sequence.
ACCESSION   DANHOL010000169 DANHOL010000000
VERSION     DANHOL010000169.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 4224)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4224)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4224
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.171"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            85..744
                     /locus_tag="PTC08_002127"
     CDS             85..744
                     /locus_tag="PTC08_002127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HDK5683599.1"
                     /translation="MKKTISVLGLGLLATFFVSNESYAAETIQNNTSSSETNQNSDQT
                     PLDHYIRKADGTLVEPNVYPHKDYVENEGPLPEFKFQVDSKKDSSDPNQAPLDHYIRK
                     ADGTLVEPNVYPHKDYVENEGPLPEFKFMYADKQNHHDQQSKNNKDKQRANYSDKKHN
                     DQQGHPKAVTPAVQHDKAVTSNATVKALPNTGESDKTTQLPIVLSLLSVGILVLLKLR
                     K"
     gene            1018..1983
                     /locus_tag="PTC08_002128"
     CDS             1018..1983
                     /locus_tag="PTC08_002128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="competence protein CoiA"
                     /protein_id="HDK5683600.1"
                     /translation="MLTAYNVQSQQILATHARKEEVYHCPICKEVLILRQGVRKGAHF
                     AHYRHSMGHVHLKGESVQHARCKAALYEQLCKIDPATQLEPYIKKITQIPDMIFRAWA
                     IEVQLSSIAIKTMRERTEGLLSEGYRVLWLAKKPQMKKGLYVLSQLQQQCIIPSTKTL
                     YCIDTTSCELFRLSHMIPITAKTFHGELTPLSIQAFSQALQQDPQYDVVIRKLSTSQI
                     LKYIQQCRRQNNVLEPTLSLMYQMRMLDEQVVKVTGFLFPEQIYIHTHPVLWQLYILK
                     CLQAGIPSHSLLLKQLKFRHFAVEECNRQQIINRIVQRYLKLLNL"
     gene            2057..3865
                     /gene="pepF"
                     /locus_tag="PTC08_002129"
     CDS             2057..3865
                     /gene="pepF"
                     /locus_tag="PTC08_002129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligoendopeptidase F"
                     /protein_id="HDK5683601.1"
                     /translation="MSQQLTREQQEQKYPEYSWDLTTIFESDESWEAAFKTVESYLGK
                     EEQFKGHLGDDAETLYQALSLEDEIETELESVYVYAHLKQDQDTANDKYTGFEARAHQ
                     LAIKLSSAWSFLVPELLQIDEKTIESYVAEHEGLKRFEFDLNLINQKRPHVLDAEKEK
                     LLTEAQDALSTPSNVFSMFDNADLTFDDVTDKDGEEHALTQGSFIKYLESDDRLLRQS
                     AYENMYKAYGSYNNTLAATLAGEVKKHVFNARSHNYKSARAQALGNNHIPEAVYDNLV
                     KTVHEYLPLLHRYTKLRKELLGVDDLKMYDMYTPMVKDIKFEMPYDEAVEWMLKGLEP
                     MGEEYLNVIKEGLNNRWVDVYENKGKRSGAYSSGSHKTNPFILLNWSDTVSDLYTLVH
                     EFGHSAHSYFSRKNQPSNMSGYSIFVAEVASTCNEALLSHYMEQNLDDKRRLLLLNQE
                     LERFRATLFRQTMFAEFEHKIHQIEEAGEPLTATRMNEEYAALNRQYFGDTVETDEYI
                     SKEWSRIPHFYMNYYVYQYATGYSAAQSLSHQILTEGAPAVERYINEFLKKGSSNYPI
                     EILKNAGVDMTTPGPIEDACKVFEQKLDAFEKLMKA"
BASE COUNT         1484 a          721 c          826 g         1193 t
ORIGIN      
        1 caatattatt ctttatactc aattaaaagt gataaatggt taggctatgt taatgctaca
       61 aaatagaaaa tggaggtctt tttaatgaag aaaacaattt cagtacttgg tctagggcta
      121 ttagcaacat tttttgtaag taacgaatca tatgccgcag aaacgattca aaacaatacg
      181 tcatcaagtg aaacgaatca aaattcagat cagacgccgt tagatcatta tattcgaaaa
      241 gcagatggca cactggttga accgaacgtg tacccacata aagattatgt agagaatgaa
      301 ggacctttac cagagtttaa atttcaagtt gactctaaga aagattcatc tgatccaaat
      361 caagcaccgt tagatcatta tattcgaaaa gcggatggca cgttggttga accgaatgta
      421 tatccacaca aagattatgt cgaaaatgaa gggcctttac cagagtttaa atttatgtat
      481 gctgacaaac aaaatcatca tgaccaacag agtaaaaaca acaaggataa gcagcgtgca
      541 aattacagtg acaaaaagca taatgatcag cagggtcatc caaaagcagt cacgccagct
      601 gtacaacatg ataaagcagt cacttcaaac gctactgtaa aagcattgcc aaacacaggt
      661 gaatctgata aaacaacaca attaccaatc gtattatcat tgttatctgt ggggatttta
      721 gttttattaa aattgagaaa ataaataaaa gatagatgtc tacatgaaag aaagggatga
      781 ccctgtttgc gtagggtttt ctcttcttat tttaactgtt catatggcat ggttggacgt
      841 gtcagattat catgttatgc atattgctgc gtaagtcgag gttaactgga aaacatatag
      901 ataaaaatga ggtcaagtgg tgtgtatcgc ttggtctttt ttatttgcga aaaaaattca
      961 ccttattcca aagtaattct acaaatttaa acgtgtaata ggatgaggtg aaaagagatg
     1021 ttaacagctt ataatgtaca atcacaacaa attttagcaa cacacgcacg taaggaagaa
     1081 gtgtatcatt gtccaatttg taaagaggta ttgattttaa ggcaaggggt gcgaaaaggt
     1141 gctcattttg cgcattatcg gcattcaatg gggcatgtac atttaaaagg agaatctgtt
     1201 cagcacgcac gatgtaaagc tgctttgtat gaacaacttt gtaagattga tccggcaaca
     1261 caattggaac cttacattaa aaaaatcaca caaattccag atatgatttt cagagcatgg
     1321 gctattgagg ttcaactgag ttccattgcg ataaagacga tgagagagcg gacagaagga
     1381 ttgctaagtg aggggtatcg tgttttatgg ttagcgaaaa aacctcaaat gaaaaagggg
     1441 ctttatgtgt tatcgcaact gcaacaacaa tgtatcatcc cttctacaaa aacgttgtat
     1501 tgtatagata cgacttcatg tgagctgttc agattatctc acatgatacc gattaccgca
     1561 aaaacctttc atggagagtt aacaccactt tctattcaag cattcagcca agcgttacaa
     1621 caggaccctc agtatgacgt ggttatcaga aagttgtcga catctcaaat tttgaaatac
     1681 attcaacaat gtcggcgtca aaacaatgta ctagagccta cgctgtcatt gatgtaccaa
     1741 atgcgcatgt tagacgaaca agttgtgaaa gttacaggct ttttatttcc agaacaaata
     1801 tacatccata cgcatccagt gctatggcaa ctgtacatat tgaaatgtct tcaagcaggt
     1861 ataccgagtc attcactgtt gttaaagcag ttgaagtttc gtcattttgc ggtagaggag
     1921 tgcaaccgtc aacagattat caaccggatc gtacagcgct atttaaaact tctcaatttg
     1981 taggtatata gagtgcatta ttatgagaaa agtgagaaaa taggagtgtt acacacatca
     2041 cgaggaggaa tttataatga gccaacaatt gacaagagaa caacaagaac aaaagtatcc
     2101 agaatattca tgggacctca cgacgatttt cgaaagtgat gagtcttggg aagcagcgtt
     2161 taaaacagtt gaaagctatc ttggcaaaga agagcaattc aaaggacatt taggtgatga
     2221 cgccgaaaca ttgtatcaag ctctttcgtt agaagatgaa attgaaacag aacttgaatc
     2281 agtttatgtt tatgcacatt taaaacaaga ccaagataca gcgaatgaca agtacacagg
     2341 ttttgaagcg cgtgcacatc aattagcgat taaattaagt tcggcttgga gtttcttagt
     2401 accggaatta cttcaaatcg atgaaaaaac aatcgaatct tacgttgctg aacatgaagg
     2461 attaaaacgt ttcgaatttg atttgaactt aattaaccaa aaacgtccgc acgtcttaga
     2521 tgcagaaaaa gaaaaattat tgactgaagc acaagatgcg ttgtctacgc cgagcaatgt
     2581 gttcagtatg tttgataatg ccgacttaac ttttgatgat gtaacagaca aagatggtga
     2641 agagcatgca ttgacacaag gttcattcat caaatattta gagtcagatg atcgtctgct
     2701 acgtcaatca gcttatgaaa acatgtataa agcctatggt agctataaca atacattagc
     2761 ggcaacatta gcaggtgaag taaagaaaca tgtgtttaat gcacgttctc acaactataa
     2821 gagtgcaaga gcacaagcat tggggaacaa tcatattcct gaagcagtat acgacaatct
     2881 cgtgaaaaca gttcatgaat acttaccact cttacatcgt tacacaaaat taagaaaaga
     2941 attactcggt gtcgatgatt tgaaaatgta cgatatgtat acgccaatgg tgaaagacat
     3001 caagtttgaa atgccttatg acgaagcggt tgagtggatg ttaaaaggcc ttgaaccgat
     3061 gggcgaagaa tacttaaatg tcattaaaga aggtttgaat aaccgatggg tcgacgttta
     3121 tgaaaacaaa ggtaaacgtt caggtgccta ttcatcaggt tcacacaaaa ccaatccatt
     3181 cattttatta aactggtctg acacggtctc tgacttatat acgttagtac atgaattcgg
     3241 tcattcagcg cacagctatt tcagccgtaa aaaccaacca tccaatatga gcggttattc
     3301 tatttttgta gcggaagtgg catctacatg taatgaagcg ttattaagcc actacatgga
     3361 gcaaaattta gatgacaagc gtcgtttact gttgctcaac caagaattag aacgtttccg
     3421 tgcaacgtta ttccgtcaaa caatgtttgc agaatttgaa cataaaatcc atcaaattga
     3481 agaagcaggg gaaccattaa cagcaacacg tatgaacgaa gaatatgctg cattaaaccg
     3541 tcaatatttc ggtgatactg ttgaaacaga tgagtatatt agtaaagaat ggtcgcgtat
     3601 tccgcatttc tatatgaact attacgtcta tcaatatgcg acaggttaca gtgcagcaca
     3661 aagtttaagt catcaaattt tgactgaagg tgcacctgct gttgaacgtt atatcaatga
     3721 attcttgaaa aaaggaagct caaattatcc aatcgaaatt ttgaaaaatg ccggtgtcga
     3781 tatgacaaca ccaggtccaa ttgaggatgc atgtaaagtg tttgaacaaa aattagacgc
     3841 ttttgaaaaa ttaatgaaag cttgaggatg ctgaatccgt ttacaatatg tcagatttgt
     3901 gaaagtttta atttctgggt ttaaatgggt tgaaacaaca tcacacacgt gatatattat
     3961 gaacatgaaa ttaatcacat tacaaacata cccctttgtt tgaagtgaaa aatttctccc
     4021 atcccctttg tttagcgccg tgtcaaaaca cggcgttttt taatgctttc atttcctgtt
     4081 tcttaacaat aattcccatt tatgcgacat tcaaaatcat tgatattcca cttaaacaac
     4141 aaaatattcc gtttatagct gtatctatct aacttatgag tagtgtgcta tataaaaagg
     4201 gggatattga gacatttaaa gaca
//
LOCUS       DANHOL010000170         4120 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.172, whole genome shotgun sequence.
ACCESSION   DANHOL010000170 DANHOL010000000
VERSION     DANHOL010000170.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 4120)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4120)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4120
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.172"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(6..395)
                     /locus_tag="PTC08_002130"
     CDS             complement(6..395)
                     /locus_tag="PTC08_002130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HK97 gp10 family phage protein"
                     /protein_id="HDK5683602.1"
                     /translation="MPIKLKGMKELERELENRYGKAKMKRIVDEALVAGGLVIVQKIK
                     SNFESFKDTGASKAEVKLSKPFTLNGVRTIKIHWKGPKERYRIIHLNEFGTIKNPNPR
                     GKGAVERALRSGQEAYFQAIKQRLKRG"
     gene            complement(385..753)
                     /locus_tag="PTC08_002131"
     CDS             complement(385..753)
                     /locus_tag="PTC08_002131"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683603.1"
                     /translation="MNKNYRPPKISNGDLRVPVTFFRMIENDGPFPGSKKKEEVFATL
                     CEVYESSTKDLEKTNGVTGAHKVTINFRNPHTDYYIDHSDTFELIYGLYENSTFKVID
                     FAPNSSNKEMIKVVGVANAN"
     gene            complement(737..1024)
                     /locus_tag="PTC08_002132"
     CDS             complement(737..1024)
                     /locus_tag="PTC08_002132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage gp6-like head-tail connector protein"
                     /protein_id="HDK5683604.1"
                     /translation="MITQKHVKEMKRRLKIFHTFEDEHIQSLLEQSCEDIKYRCQEFD
                     MDKNKRGAELVYERTRYAYNDSLEFFHENFLGQITSFALENMKETDYEQEL"
     gene            complement(1042..2241)
                     /locus_tag="PTC08_002133"
     CDS             complement(1042..2241)
                     /locus_tag="PTC08_002133"
                     /inference="COORDINATES: protein motif:HMM:TIGR01554.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major capsid protein"
                     /protein_id="HDK5683605.1"
                     /translation="MVVKFKDDIENNVDKLKNEYFEAVRNDADPETIENKYAEYMAAF
                     SSNLHDNILKDAREEALNANTDEQVLMKRGQNVLTSEEKRFFTNLVEDDANLDTYKEE
                     IILPETTVSRVFEDMQSERPLLSKINFQIAGIKTRIIAGDPDGAAMWGEIFGKIQGQI
                     QANFREYTFSQNKLTAFAIVPKDLLDFGPEWVERYVRLQLAEAMGAKLEEGIVKGKGP
                     VQNQPVGLIKDMVKDDSGNITSVKDKTEKGKLTFADAKTTVTELSNLMNSLSVKEDGK
                     RINISGKVSLLVNPDQLFAIQAKYTIQNANGQWVTSLPFNLDILPSEFVEKGKIIAFV
                     PSRYYAMYKGATQIREYGEVLALEDANVYIAKQYAHGMPDDNKVAEVYSFSDVVVAES
                     DESDLSA"
     gene            complement(2254..2967)
                     /locus_tag="PTC08_002134"
     CDS             complement(2254..2967)
                     /locus_tag="PTC08_002134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Clp protease ClpP"
                     /protein_id="HDK5683606.1"
                     /translation="MKTKQELMKATSKYAFKNEVKDDKVVLTLSGPVAQASIFADETI
                     NSHDIAEALDGVDKDILIRLNSPGGDAFQGIEIYNYLKNHSSHITVEVTALAASAASI
                     IAMGADELVMSKGASLMIHEAATIAIGNKADVKKTLNALETVDASIVEVYKDKTGLDD
                     KEIEQLMTDETWFTAKDAVDKGFADKLKDTVETPKETQDAVENNSEMIAIKNEIEGLK
                     IQLSNFKNMENKSKKKRYL"
     gene            complement(2930..4108)
                     /locus_tag="PTC08_002135"
     CDS             complement(2930..4108)
                     /locus_tag="PTC08_002135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage portal protein"
                     /protein_id="HDK5683607.1"
                     /translation="MGFLDVVFKRNLEVRDILDLKLEDDPASRSYLKRMALETSINFI
                     ARTFSQSEFWVKDGQELKRDKLYYKLNVRPNTDSSASDFWHKVIYRLVYDNEVLIIKT
                     DSDDLLIADDFYREEFAVYEDIFKDVVVKDFKFERSFKMNEVIYLNYNNDKLQRFVES
                     LFADYGELFGRMMDTQLRMNQIRGVVRTTKGAGELDNASMQRMQKFINKIYGQLNNNG
                     TAIVPEIPPFQFEEISKNNSSGRDNSGENLQKVKRMIIDDVAKIIGIPSNLIHGDVAD
                     LSNAMTAYIDFCINPLIAKIEDELNSKFFTETEFLKGKRIKVVGINAVDPIKNAEKVD
                     KLISSSAAKQNEVREMLGLAPVDGGDRFILTKNYQTEDDLKGGENENEDETRANESNV
                     "
BASE COUNT         1201 a          852 c          567 g         1500 t
ORIGIN      
        1 tcgtatcaac ccctttttaa cctttgttta atagcttgga aataagcttc ttgtccactt
       61 cttaaagctc tttcaacagc ccctttacca cgtgggttag ggttcttgat tgtgccaaat
      121 tcatttaaat gaataattct gtaacgttct ttagggcctt tccagtgtat tttaatcgtt
      181 cgaacaccat ttaaagtaaa aggtttagat aacttcactt cagctttact agctcctgtg
      241 tctttaaagc tttcaaagtt acttttgatt ttttgcacga ttacaagacc accagcaact
      301 aaagcttcat ctactatacg cttcattttc gctttaccat atctattttc aagttcacgt
      361 tccaactctt tcataccttt taatttaatt ggcatttgct acacctacta ccttaatcat
      421 ttctttatta cttgaattag gcgcaaagtc gattacttta aatgtcgaat tttcatacaa
      481 gccataaatg agttcgaacg tatctgaatg atctatataa taatcagtat gcggatttct
      541 aaaattaatc gtgactttgt gcgcaccagt cacaccgttt gtcttttcta aatcctttgt
      601 tgaactttcg tacacttcac aaagggtagc gaacacttct tctttctttt tacttcctgg
      661 gaatggtcca tcattttcaa tcatacgaaa aaaagtaaca ggaactctca agtccccatt
      721 acttatttta ggtggtctat aattcttgtt cataatcagt ctccttcatg ttttctaacg
      781 cgaaagaggt gatttgtcct agaaagtttt cgtggaaaaa ctctaaactg tcgttataag
      841 catatcttgt acgctcataa acaagttcgg caccacgttt attcttatcc atatcaaatt
      901 cttgacaacg atatttaata tcctcacagg attgttcaag taatgattgt atgtgctcat
      961 cttcgaacgt atgaaatatt tttaatcgtc gcttcatctc tttaacatgc ttttgagtga
     1021 tcatctaacc acctctttca attatgcgct taaatctgat tcgtctgatt cagctactac
     1081 aacatcacta aaagaataaa cctcagctac tttattatca tctggcatac catgcgcata
     1141 ttgttttgca atgtaaacat tagcatcttc aagagccaat acttcgccgt attcgcgaat
     1201 ttgtgtagca cctttataca ttgcgtaata acgtgacgga acaaaggcaa taatttttcc
     1261 tttttcaaca aattcagatg gtaaaatatc taagttaaaa ggtaatgaag taacccattg
     1321 accattagca ttttgaatcg tgtatttagc ttgaattgca aataattggt cagggttaac
     1381 aagtaatgac acctttcctg aaatgttaat acgcttacca tcttctttaa cagatagcga
     1441 attcataaga tttgataatt cagtcaccgt cgttttagca tcagcaaatg taagttttcc
     1501 tttttctgtt ttatctttaa cagaagtaat attaccgctg tcatctttta ccatatcttt
     1561 aattaatcca acgggttggt tctgtactgg acccttacct tttacaatac cttcttctaa
     1621 tttagctccc atagcttctg ctaattgtag gcgaacataa cgctctaccc attctggacc
     1681 aaagtctaat aaatctttag gtacaatcgc aaacgctgtt agtttgtttt gagagaatgt
     1741 gtattcacgg aaattagctt gaatttgtcc ttgaatttta ccgaaaatct caccccacat
     1801 cgcggcacca tcaggatcac ctgcaataat acgcgtttta atacctgcga tttggaaatt
     1861 aattttagat aacaaaggac gttcactttg catatcttca aacactctag aaacagttgt
     1921 ctcaggtaag atgatttctt ccttataagt gtctaaatta gcatcatctt caactaaatt
     1981 tgtgaaaaat cgtttttctt cagatgttaa tacgttttga ccacgcttca ttaatacttg
     2041 ttcgtctgta ttagcattta aagcctcttc gcgcgcatct tttaaaatat tgtcatgcaa
     2101 attagacgag aaagcagcca tgtattctgc atatttattc tcaatcgttt caggatcagc
     2161 atcgttgcgt actgcctcaa aatattcatt tttcaatttg tctacgttgt tttcaatatc
     2221 gtctttaaat ttaacaacca tttaaaattc ctcctataaa tatcgttttt tctttgattt
     2281 attctccata tttttaaaat tggataattg aattttcaat ccctcgattt cattttttat
     2341 agcaatcatt tcgctattgt tttccacagc atcttgagtt tctttaggtg tttcaaccgt
     2401 atctttcaac ttatctgcga atcctttatc aacagcatct ttcgctgtaa accaagtttc
     2461 atcagtcata agttgctcga tttctttgtc atcaagtccc gttttatctt tgtaaacctc
     2521 tacaatcgat gcatccactg tttctaaagc atttaatgtc tttttaacat ccgctttatt
     2581 accgattgca attgtcgcag cctcatgaat cattaatgaa gcacccttgc tcatgacaag
     2641 ttcatcagca cccattgcaa tgatagaagc agcacttgca gctaatgcag tcacttcaac
     2701 tgtaatatgt gatgaatgat tctttaaata gttataaatt tcaatccctt gaaaagcatc
     2761 accacctggg ctgtttaagc gaattaaaat gtctttatcg acaccgtcca aagcttctgc
     2821 aatatcatgg ctgttaatgg tttcatctgc aaaaattgag gcttgtgcaa caggaccact
     2881 aagagtgaga acgaccttat cgtctttcac ttcattttta aaagcatatt tagacgttgc
     2941 tttcattagc tcttgtttcg tcttcatttt cattctcacc ccctttcaag tcatcttcag
     3001 tttgatagtt tttagtcaaa ataaaacggt ctccaccgtc aacaggtgca agaccgagca
     3061 tttcacgtac ttcgttttgt ttagctgcgc ttgatgatat taatttatct actttttcag
     3121 cgttcttaat tggatctact gcgttgatac caacaacttt tatacgtttc ccttttaaaa
     3181 attcggtttc tgtaaaaaat ttgctattca actcgtcttc tatttttgcg attaaaggat
     3241 tgatacaaaa atctatatac gcagtcatag cattacttaa atccgcaaca tcgccatgta
     3301 tcaaattcga tggaatgcct atgattttag cgacatcatc aataatcatg cgcttaactt
     3361 tttgcaagtt ttcaccactg ttatctctgc ctgatgaatt attcttagaa atttcttcaa
     3421 attgaaacgg tggtatttca ggaacaattg ctgtgccatt attattaagc tgtccatata
     3481 ttttgttaat aaatttttgc atcctctgca tactagcatt gtctaattct ccagcacctt
     3541 tagtagttct tacaacacct cttatttggt tcatccgtag ctgtgtgtcc atcatacgac
     3601 caaataattc accataatca gcaaataagc tttcaacaaa acgctgtaat ttatcgttgt
     3661 tatagttcaa atagatgact tcattcatct taaatgaacg ttcaaatttg aaatctttta
     3721 ctacaacatc tttaaaaata tcttcgtaaa ctgcaaattc ttctctgtaa aaatcatcag
     3781 ctatcaacaa atcatctgaa tcagttttaa tgattaaaac ctcattatcg taaaccaacc
     3841 tataaataac tttgtgccaa aaatctgatg cacttgaatc tgtgttaggc ctaacattca
     3901 acttataata caatttatct ctttttaatt cctggccatc tttaacccag aactctgatt
     3961 gactaaatgt tcttgcgata aaattaattg atgtttcaag agccatacgt tttaaatatg
     4021 aacgacttgc agggtcgtcc tctaatttta aatcgagtat atctcttact tctaaattgc
     4081 gtttaaacac tacatctaaa aaacccaatt aaccacctcc
//
LOCUS       DANHOL010000171         4075 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.173, whole genome shotgun sequence.
ACCESSION   DANHOL010000171 DANHOL010000000
VERSION     DANHOL010000171.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 4075)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4075)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4075
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.173"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(127..360)
                     /locus_tag="PTC08_002136"
     CDS             complement(127..360)
                     /locus_tag="PTC08_002136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NrdH-redoxin"
                     /protein_id="HDK5683608.1"
                     /translation="MSEVIIYTQNECPPCSFVKQYLEQHNVPFEERNIVNSTYRNEMI
                     ERDAFSTPFILIDGEPMYQVDLDLMNKKLGIQS"
     gene            563..1906
                     /locus_tag="PTC08_002137"
     CDS             563..1906
                     /locus_tag="PTC08_002137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome ubiquinol oxidase subunit I"
                     /protein_id="HDK5683609.1"
                     /translation="MDAVDISRFLTGMTLAVHIIFATIGVGMPLFFAMAEFIGIKKKS
                     AQYIALAQRWAKGYTITVAVGVVTGTIIGLQLSLLWPTFMRIGGHVIALPLFMETFAF
                     FFEAIFLSIYLYTWNRFKNQWIHFFISIPVIIGGSFSAFFITSVNSFMNTPAGMTIEN
                     GRMVNVDPIAAMFNASFFVRSFHVIATALMTMAFILASIAAFKLLKNKIEKDRRYHQA
                     ALKMTMIAGLIFSMLSMLAGDLSAKFLHQEQPEKLAAYEWHFNTESQADLVLFGVLDE
                     STQEVKGALHIPGALSFLSDSSFDTEVKGLNEFPKDELPPLIVHYFFDLMVFFGIFCF
                     VISFAYVMALWIKRFNPHHKLLLYATLLGGPAAMLAIEFGWFLTELGRQPWIVRGFLK
                     VQDAATDASGLVFVTILFAILYFVLLFSATYVLVRMFKNKPAYQHIESLSQRGDA"
     gene            1906..2925
                     /locus_tag="PTC08_002138"
     CDS             1906..2925
                     /locus_tag="PTC08_002138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002442138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome d ubiquinol oxidase subunit II"
                     /protein_id="HDK5683610.1"
                     /translation="MVYEVIGITVLWIFLFGYIIVASIDFGAGFFSLHAKLFGQSHEI
                     NDLIQRYLNPVWEVTNVFFVFFFVGIVGFFPDTAYYYGTVLLIPGSIALILLSIRGAF
                     YAFENYGQDSKLSWLMLYAVSGLLIPASLSTALTISEGGYIIESSSGNVDLNWTELLL
                     SPFGWAVVLLAIVSVLYISSGFLTFYAHRAKDTSAYQLMRKWFLMWGAPMIMMSLFVF
                     LSLRIQNEAHFMSAVFDYGWLFIISFIAFAIAGVLTLLKKAHGIAFIFVIIQMGTAFF
                     GYGLSKLPYILYPYVHIDDAVTNDSMALVLTIAFIGGLLLLLPSLFFILKLFVFDKDY
                     VRGKK"
     gene            3074..3733
                     /locus_tag="PTC08_002139"
     CDS             3074..3733
                     /locus_tag="PTC08_002139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003222311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrkA family potassium uptake protein"
                     /protein_id="HDK5683611.1"
                     /translation="MDKEYVVIGLGRFGGSIVRELNALDMDVMAIDKDENRVDEYSDI
                     ATHAVVADTTDEAVMKSLGIRNFDHVIVAIGENIQASTLTTLILKELGVKKVTAKAQN
                     DYHAKILNKIGADTVVHPERDMGRRIAHNVASATVLDYLELSDEHSIVEIKASETMAG
                     QTLIDLDIRAKFGINIIAIKRGKEIIVAPDPDMGLEFDDILIMIGHDNDLTRFEKKMA
                     H"
BASE COUNT         1191 a          673 c          883 g         1328 t
ORIGIN      
        1 ggtgtgtctc atacttgcta tacatattct caagaagtat gtataggatg aaagactaaa
       61 cttaaaaaga ctgggagatg catactccca gtctttagct aaaactaaaa tattcaaata
      121 atgtgtttat gattgaatac cgagcttttt gttcattaaa tctaaatcga cttgatacat
      181 cggctcgcca tcaattaaaa tgaacggtgt tgaaaaagcg tcgcgttcga tcatttcgtt
      241 tcgatacgtt gaattgacaa tgtttcgttc ttcaaatggg acattatgct gttcaagata
      301 ttgtttgaca aatgaacatg gcggacattc attttgtgtg taaataatca cttctgacat
      361 agagacgcct actttcatat caattgttgt tacatcttaa tcgacacttt aataaaatgc
      421 aactgaaacg actgtataaa aatgacaaat tttagtcatg tcattaaatt gtcaatgtct
      481 taatgaacaa aaaaatatat atgtgacctg tatattgttt ataatgaata gacattttca
      541 tcatagttaa ggaggtcgtg aaatggatgc agtggatatt agccggtttt taacaggtat
      601 gacacttgca gtccacatta tttttgcaac gattggtgta ggtatgccac ttttctttgc
      661 gatggcagaa tttatcggca ttaaaaagaa aagtgctcaa tatatagcat tagcgcaacg
      721 ttgggctaaa ggatatacga ttaccgtggc agtaggcgta gtaacaggga caattatagg
      781 tttacagtta tcattactat ggccgacatt tatgcgaata ggtgggcacg tcattgcttt
      841 gccattattt atggaaacat ttgcgttttt ctttgaggcg attttcttaa gtatttattt
      901 atatacttgg aatcgtttca aaaatcaatg gatacacttt ttcattagta tcccagtgat
      961 tatcggtggt agtttttctg cgttctttat tacgtcggtc aattcgttca tgaatacgcc
     1021 ggcaggtatg acaatagaaa atggtcgcat ggttaatgtg gatccaattg cagcgatgtt
     1081 caacgcatca ttttttgttc gatctttcca tgtgattgcg acagcgctta tgacaatggc
     1141 gttcatttta gcaagtattg cagcgtttaa gttactgaaa aacaaaattg aaaaggatcg
     1201 tcgttatcat caagcggcac tgaagatgac gatgattgca ggattgattt tttcaatgtt
     1261 atcgatgtta gcaggggact tatcagcgaa gtttttacat caagaacagc ctgagaaact
     1321 tgcagcatat gaatggcatt ttaatacaga atcacaagcg gatctcgtgt tatttggtgt
     1381 gcttgatgaa tcaacgcaag aagtgaaagg cgccctccat attccaggtg cgttaagctt
     1441 tttatcggat tcaagttttg atacagaagt caaaggactc aatgaatttc caaaagatga
     1501 attaccccca ctcattgtcc attatttctt tgatttaatg gtgttctttg ggattttctg
     1561 tttcgtcatt tcattcgctt atgtcatggc attgtggatt aaaagattca acccacatca
     1621 taaactatta ctctatgcaa cgttgttagg tggtccagca gccatgttag cgattgagtt
     1681 cggttggttc ttaactgagc ttggacgcca accatggatt gtgagaggct tcttaaaagt
     1741 gcaagatgcc gcgacagacg caagtgggct cgtgtttgtg acgattttat ttgcgatact
     1801 ttacttcgtg ctgttattct cagccacata cgtgcttgta agaatgttta aaaataaacc
     1861 ggcctatcag cacattgaaa gtttaagtca acgaggtgat gcatgatggt ttatgaagtg
     1921 atagggataa cagtactctg gattttctta tttggttata tcatcgttgc ttcgattgat
     1981 ttcggcgcag gatttttctc attacacgca aaattatttg gacaatcgca tgaaattaat
     2041 gatttaattc aacgttactt gaacccggta tgggaagtta ccaatgtatt ttttgtcttt
     2101 ttctttgtag gcattgttgg atttttccca gatacagctt attattatgg cacagtttta
     2161 cttattccag gttcgatcgc acttatttta ctttcaattc gaggagcctt ttatgccttc
     2221 gaaaattacg gtcaagatag taaattgtct tggcttatgt tatatgcggt atcaggatta
     2281 ttgattccgg cttcattatc aacggcatta accatttctg aaggtggtta tatcattgag
     2341 tcgtcttctg gcaacgttga tttgaattgg acagaattac tattaagtcc attcggttgg
     2401 gcggtcgtcc tattagccat tgtgtctgtg ctatacattt catcaggatt tttaacattt
     2461 tatgcgcacc gtgccaaaga cacatccgca tatcaattga tgcgtaaatg gtttttaatg
     2521 tggggtgcac cgatgatcat gatgtcgttg tttgtgtttt tatcattaag aatacaaaat
     2581 gaagcacact ttatgtcagc agtgtttgat tatggctggt tatttatcat cagtttcatc
     2641 gcttttgcca ttgctggcgt attgacgctc ttgaaaaaag cacacggtat cgcatttatt
     2701 tttgtcatca ttcaaatggg cacagccttt ttcggatatg ggttaagcaa gctgccatac
     2761 attttatatc catacgtgca cattgacgat gcggtgacca atgatagtat ggcgttagtg
     2821 ttaacaatcg cctttatcgg tggtttacta ttattgttac catcactctt tttcatattg
     2881 aaattgttcg tgtttgataa agattacgtc cgtggtaaaa agtaagtggg accagtaaaa
     2941 cggtgcatca taaatcattt tgtagtaata tgataatagt attgaataca tgtgtggctt
     3001 aaagtcaagg attatcaaca tctgagcact ttgagcccgc atttttaatt taacttaatt
     3061 caggaggcca aaaatggata aagagtatgt agtcattggt ctaggtcgct tcggtggcag
     3121 tattgtaaga gaattgaacg cgttagatat ggatgtcatg gcgatagata aagatgaaaa
     3181 tcgtgtcgat gaatacagtg atatcgcgac acatgccgtt gtggctgata cgactgacga
     3241 agccgttatg aaaagtttag ggattcgaaa ttttgatcat gtcattgtgg caatcggaga
     3301 aaatattcag gcaagtacgt taacaacatt gattcttaaa gaactcggtg ttaaaaaagt
     3361 aacggctaaa gcacaaaacg attatcacgc caagatttta aacaaaattg gtgccgatac
     3421 agtcgtgcat cctgaaagag acatgggtcg tcgtatcgcg cataatgtgg ctagtgcaac
     3481 agtgctcgat tatttagagc tttctgatga acactccatt gtagaaatta aagcgagcga
     3541 aacgatggca ggacaaaccc ttattgactt agatattcgt gcgaagtttg ggattaatat
     3601 tattgcgatt aaaagaggga aggaaatcat tgtggcaccc gatccagata tgggattaga
     3661 atttgatgat attttaatta tgattggtca tgataatgat ttaacacgat ttgagaagaa
     3721 aatggcgcat taatcattga gaagtggaat ggtggagact gttccgcttt tttaagtgcg
     3781 cccggcatgg gtaacatctt gacggtgaaa gtccgttaca ggcttggtag taggaactgt
     3841 tagcgaaaga caagggtgtc cattgcgaag tggaatctga aggaagtcgg acgcaaacac
     3901 tcgcactgac gaacagaaat atcatactaa ggctatgtag aatggatgaa tctgctgaac
     3961 aagatgaagt ccgatactac ccgagttcta catagtaaat gatgcggtga catgagtgga
     4021 aagaggttac accttacccg gggaggtctc atcagcggta tctcaaccgt agtaa
//
LOCUS       DANHOL010000172         4058 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.174, whole genome shotgun sequence.
ACCESSION   DANHOL010000172 DANHOL010000000
VERSION     DANHOL010000172.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 4058)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4058)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4058
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.174"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(306..866)
                     /gene="raiA"
                     /locus_tag="PTC08_002140"
     CDS             complement(306..866)
                     /gene="raiA"
                     /locus_tag="PTC08_002140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016424517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated translation inhibitor RaiA"
                     /protein_id="HDK5683612.1"
                     /translation="MINFEIHGDNLTITDAIRNYIEEKIGKLERYFTNVPNATAHVKV
                     KTYQNSSTKIEVTIPLKNVTLRAEERHDDLYAGIDLINNKLERQVRKYKTRVNRKNRD
                     RGYEEDVFTEVEATEPEVEQEATASDIEIIRSKTFSLKPMDSEEAVLQMNLLGHDFFV
                     FNDRETDGTSIVYRRKDGKYGLIETE"
     gene            complement(931..1599)
                     /locus_tag="PTC08_002141"
     CDS             complement(931..1599)
                     /locus_tag="PTC08_002141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComF family protein"
                     /protein_id="HDK5683613.1"
                     /translation="MKHCLFCMNTMHEAILMANLFSKTHTLCPKCHELIENCRFNETN
                     RCAYCKGNLDLSGGCRNCQNLTTMGVRFERIEPLFHYDHFMKTLLQQYKFLNDVALAK
                     VFAYYIRVKLVKDELIVPMPSSQDHDLQRTFNPVQTILHHLKLPYVACLKMRPRSKQF
                     ALSRSERYAVDNPIYFDSDISLENKSILLIDDIYTTGHTAHCAGNVLLQQKVRKLSML
                     TFAR"
     gene            complement(1596..2882)
                     /locus_tag="PTC08_002142"
     CDS             complement(1596..2882)
                     /locus_tag="PTC08_002142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HDK5683614.1"
                     /translation="MYFNGQLITDATLYDDNQIIQVEKGVTRTSTGWRCTRCATEERH
                     HFYQYESDVINDTITYCRHCIQMGRMDSVTDVFTLRSVTCRSEAAYQLPFQLSTQQQY
                     ASEHIVQAVLRHESLLLHAVTGAGKTEMMFEAIAQARRQGYNVAVVSPRLDVVIEVSR
                     RIKQTFLNEAIDILHQASRQQYAAHFVIATVHQLYRFKRHFHVIFIDEVDAFPLAMDP
                     SLMQTIENAARMEKALIYMTATPPPHLKAQFDDAHTITLPARFHQHPLVIPRFKYFKV
                     RVNKVQFYLLTRMKAQQEQQRTTLIFFSEICEMKRFFKTYAPLVVRLGLVYSEDPERL
                     YKVESLRKGLYDIMLTTTILERGFTMPYLDVWVVDSHRYTSTALIQIAGRVGRKAVCP
                     DGDVLFLHEGRTRAMYDAHRQIVEMNQLAKKRGWIK"
     gene            complement(3037..3921)
                     /gene="fakB1"
                     /locus_tag="PTC08_002143"
     CDS             complement(3037..3921)
                     /gene="fakB1"
                     /locus_tag="PTC08_002143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid kinase binding subunit FakB1"
                     /protein_id="HDK5683615.1"
                     /translation="MKIAVMTDSTSYIPQHILEKNNIRTVPLSITLENGENYKENISI
                     FANEFHEILRTSKSIPTTSQPAIGEMISAYEAYRDEGYTDVIVIHLSSGISGAYQTAM
                     QASTMVEGIRVHPVDSKIACLPEGSLVLRALDLIEQGLDVEAILADLDDMVQHVGAFL
                     VVDDLKNLHKSGRITGAQAWIGNLLKMKPVLTFEDGLIVPYEKVRTKKRALKLIEDKA
                     VELSNQYEQSTIMVIGGDDRTESQGVYNGLKEKYPNKNIVFSELGPVITSHLGLGGFG
                     IGVVNRHIDVPDSVNVER"
BASE COUNT         1191 a          860 c          662 g         1345 t
ORIGIN      
        1 tataatacct cataccgtca aataacaatg catgatattt ctttatgata ttcgaatcac
       61 cttcctactt tatagacgtt cgacgtataa accaaatcaa aaacttgtag tcaggctttt
      121 gaatcaaaca cacataaata tttcctatct gataaaagaa gggacaagct ttaaatctaa
      181 tacatctgat tagatttata cacttgcccc accctttttg cacgcatcat cacacgttca
      241 atcaagactt atagttatca aattgttctg cgcaatgaac gctatctctt tatcatgatt
      301 agagattatt cagtttcaat caaaccgtat ttaccatctt tacgacgata aacaatgctt
      361 gtaccatctg tttcacgatc attaaacacg aagaagtcat gtcctaataa attcatttgt
      421 agtacagctt cttctgagtc cattggtttt aagctgaacg ttttagaacg aatgatttcg
      481 atatcagacg ctgttgcttc ttgttccact tctggttcag tcgcttcaac ttctgtaaat
      541 acatcctctt cataaccacg gtctctgttt ttacgattga cacgtgtttt atacttacga
      601 acttgacgtt caagtttatt attaattaaa tcgatacctg catataaatc atcgtgtcgt
      661 tcctctgcac gaagcgttac atttttcaat gggattgtca cttcgatttt agtgcttgaa
      721 ttttgatatg ttttcacttt cacatgcgct gttgcatttg gcacattagt gaaatagcgt
      781 tctaacttac caattttctc ctcaatataa tttctaatag catctgtgat tgtgaggttg
      841 tctccatgaa tttcaaagtt aatcatagtg ctcgctcctt tcaacctctt tttataatat
      901 attccttact tatattttaa catgtttacg ctatctcgca aacgttaaca tacttaattt
      961 tctgactttt tgttgtaata atacatttcc agcacagtga gcagtgtgac cggtcgtgta
     1021 aatatcatca ataaggagaa tacttttgtt ttccagagaa atatcactat cgaagtaaat
     1081 gggattatcg actgcatagc gttctgaacg tgataatgca aattgtttcg agcgaggacg
     1141 catttttaaa catgcgacat aaggtaattt caaatgatgt aatatcgttt gaactggatt
     1201 aaaagtgcgt tgtaaatcgt gatcttgact ggatggcatc ggtacaatca gttcatcttt
     1261 tacaagtttt acccgaatgt aatatgcaaa aactttcgca agtgcgacgt catttaaaaa
     1321 tttatactgc tgtaacaatg tcttcataaa atgatcataa tgaaaaagtg gttcaatgcg
     1381 ctcaaatcga acacccatag tggttaggtt ctgacaattg cggcatcctc ctgagagatc
     1441 taaattgcct ttacaatagg cacatcgatt cgtctcatta aaacgacaat tttcgattaa
     1501 ttcatgacat ttcgggcata aagtatgcgt tttcgaaaag aggttcgcca ttaaaatcgc
     1561 ttcatgcata gtgttcatac aaaaaagaca gtgtttcatt taatccatcc tcgtttcttt
     1621 gcgagttgat tcatttcaac aatttgacga tgagcatcat acatcgccct tgtgcgccct
     1681 tcatgcaaaa acaacacgtc accatctgga caaacggctt tacgtcctac acgtccagcg
     1741 atttgtatta aggctgttga agtatagcga tgactatcca ctacccatac atctaaataa
     1801 ggcatcgtga accctctttc caatatggtt gtcgttaaca tgatgtcgta tagacccttt
     1861 cgtaaagatt caaccttata taaccgctca gggtcttcac tgtaaaccaa tcctaaacgg
     1921 accactaagg gcgcatacgt tttaaaaaac cgcttcattt cacatatttc actgaaaaaa
     1981 attaaagttg tccgttgctg ttcttgctgt gctttcatac gtgttaataa ataaaactgc
     2041 actttgttca ctcgaacctt aaaatattta aacctaggga tcactagagg atgctgatga
     2101 aatcttgcag gtaaagtaat tgtatgtgca tcatcaaatt gcgcttttaa atgcggcggc
     2161 ggggttgctg tcatatagat gagtgctttt tccattcttg ctgcattttc aatcgtttgc
     2221 attaaagacg ggtccattgc gagtggaaaa gcatcaactt catcaataaa tataacgtga
     2281 aaatgccgct tgaatcgata taattggtgc actgtcgcaa tgacaaaatg tgctgcatac
     2341 tgctgccgac tcgcttgatg taaaatatca atcgcttcat ttaaaaatgt ttgcttaata
     2401 cgcctactca cttcaatgac cacatctagc cgtggtgaaa cgaccgcgac attatatcct
     2461 tgacggcgtg cttgagcaat cgcttcgaac atcatttcag tcttacctgc acctgtcacc
     2521 gcatgaagta ataatgattc atgacgcagc acagcttgaa caatatgctc agaagcatat
     2581 tgctgttgtg tcgacagctg aaaaggcaac tgatacgccg cttccgaacg acaagtgaca
     2641 ctcctcaatg taaaaacatc tgtcacacta tccatccgcc ccatttgaat gcaatgacgg
     2701 caataggtga ttgtgtcatt tattacatca ctttcatatt gataaaagtg atgtcgttcc
     2761 tcagttgcac atcgcgtaca tcgccatccg gttgatgtac gtgtcacccc cttttctact
     2821 tgtataattt gattgtcatc gtataaagtc gcgtctgtta taagttggcc attaaaatac
     2881 attttgaagc tcctttcaat aacatacacg ttccaacgcc tcattttact ttttttatcg
     2941 gaagaatttt tctgatccgg tccactttta atacgatacc tctccaaaat aaaaacagcc
     3001 ccctatcttg ggagctgctt taaactcatt ttattgttaa cgttcaacat tgaccgaatc
     3061 aggaacatcg atatgacgat tgacgacacc gataccaaat ccacctaatc ctaaatgtga
     3121 tgtaatgaca ggtccaagct ctgaaaagac gatattttta ttcggatact tttctttaag
     3181 accgttgtaa acgccttgag actctgttct atcatcgcca ccaatgacca taatcgtcga
     3241 ctgttcatac tggttcgata attcaaccgc tttatcttca attaacttta gcgctctttt
     3301 tttcgtacgc actttttcgt aagggacaat caaaccatct tcaaatgtca atacaggttt
     3361 catttttaat aaatttccaa tccacgcttg agcacctgta atacggccac ttttatgcaa
     3421 gttcttcaag tcatctacaa ctaaaaacgc ccctacatgt tgtaccatat cgtctaagtc
     3481 tgccaatatt gcttcgacat ctaatccttg ttcaatcaag tctagagcac gcaatacaag
     3541 tgatccttca ggtaaacatg caattttgga atcgactgga tgcacgcgaa tcccctcgac
     3601 cattgttgaa gcttgcatcg ccgtttgata tgccccactg ataccacttg aaagatgtat
     3661 aacaataaca tccgtgtaac cttcatctct ataggcttcg tacgcactga tcatttcacc
     3721 aatggcaggt tgactcgttg ttgggataga ttttgatgtt cttaatattt catgaaattc
     3781 gtttgcaaag attgaaatat tttctttata gttttcaccg ttttctaacg taatacttaa
     3841 cggtacagta cgaatattat tcttttctaa tatatgttga gggatatagc ttgttgaatc
     3901 agtcatgaca gctattttca tgttttcttc ctcctctaaa gcaaacactt gattttcatc
     3961 acgcatatgt gcaaaaacat tcattataga cagtgctcat tttggtatga atgtatctcg
     4021 acagtttatt atataacaaa tttcatcatg gaatgcta
//
LOCUS       DANHOL010000173         4046 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.175, whole genome shotgun sequence.
ACCESSION   DANHOL010000173 DANHOL010000000
VERSION     DANHOL010000173.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 4046)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4046)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4046
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.175"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(<1..752)
                     /gene="recO"
                     /locus_tag="PTC08_002144"
     CDS             complement(<1..752)
                     /gene="recO"
                     /locus_tag="PTC08_002144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011303003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecO"
                     /protein_id="HDK5683616.1"
                     /translation="MLVKQKGIIIKAVDYGESDKIITILNEHGAKVPLMVRRAKKIKS
                     GLQATTQIFVQGLFIYNQWKGMGTLTSVDVLNLNYELRQDIYAHSYASLCLETIDRAM
                     ETDEINPTMYRLLDFAFDRFQQGVSPQLIANIVMLKCMPRFGFDVDLSKCVMTGETNP
                     AKLTHFSFKFDGIIATEVTHRDPHALPLSNKTIYLTYVLKDLPLDKINALRIQDAIVE
                     EMSKFILLLYKEYAGMYFKSQRLINQLNRLKVT"
     gene            complement(777..1673)
                     /gene="era"
                     /locus_tag="PTC08_002145"
     CDS             complement(777..1673)
                     /gene="era"
                     /locus_tag="PTC08_002145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000134760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase Era"
                     /protein_id="HDK5683617.1"
                     /translation="MSEYKSGFVTIIGRPNVGKSTFVNRVIGHKIAIMSDKAQTTRNK
                     IQGVMTQQDAQIVFLDTPGIHKPKHKLGDYMMKVAKNTLSEIDAVMFMVNVNEEIGRG
                     DEYIMEMLKTVKTPVFLVLNKIDLVHPDALMPRIEQYQRYMDFAEIIPISALEGHNVD
                     HFINVLKSYLPEGPQYYPDGQISDHPEQFVVSELIREKILQTTSEEIPHAIGVNVERM
                     TQESEDRVHIEAVIYVERDSQKGIVIGKGGKKLKEVGKRARLDIEHLLGSKVYLDLWV
                     KVQKDWRNKSSFIKQMGYVEDE"
     gene            complement(1670..2077)
                     /gene="cdd"
                     /locus_tag="PTC08_002146"
     CDS             complement(1670..2077)
                     /gene="cdd"
                     /locus_tag="PTC08_002146"
                     /EC_number="3.5.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytidine deaminase"
                     /protein_id="HDK5683618.1"
                     /translation="MGYTDKHYTEVRKAQQKAYAPYSQFKVGAYLVTKDGQTFHGANV
                     ENAAYPSCICAERSALVAAISQGYKPGDFESITITVDSPELASPCGPCRQVIHELCDD
                     DMPVYMTNQTGEMREATVAELLPYGFSGKDLNL"
     gene            complement(2093..2440)
                     /locus_tag="PTC08_002147"
     CDS             complement(2093..2440)
                     /locus_tag="PTC08_002147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase family protein"
                     /protein_id="HDK5683619.1"
                     /translation="MFNRFKYAFQGCRTILIKDRNFLYHLIIAFLILILGWALPLSTI
                     EWLFIILAIFLVIITEAINTAIEYVVDLATQDFHIFAKHAKDVAAFSVLLASLFAFIV
                     GCIIFIPKFVSFF"
     gene            complement(2440..2901)
                     /gene="ybeY"
                     /locus_tag="PTC08_002148"
     CDS             complement(2440..2901)
                     /gene="ybeY"
                     /locus_tag="PTC08_002148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HDK5683620.1"
                     /translation="MFTIDFSDHTDQVKDDWYTQIRDVLEFAKNEEGIDEDAELSVTF
                     VDKAEIQEINRDYRQKDKVTDVISFAFEEEEDIFEGMDVPRVLGDIIICTDVAAEQAE
                     QYGHSFERELGFLALHGFLHLLGYDHMTEEDEKVMFGRQKDILNQFGLTRD"
     gene            complement(2905..3849)
                     /locus_tag="PTC08_002149"
     CDS             complement(2905..3849)
                     /locus_tag="PTC08_002149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoH family protein"
                     /protein_id="HDK5683621.1"
                     /translation="MPELIQIDDINQAQALLGNNDEHIQLIEEAFDVVIHARGQEVAV
                     KGEKVSAVTEAESVLINLLKVIEQGASITVKDVQAAIKMAKNGQIEHLIDLYEEEITK
                     DAFGKTIRAKTMGQRMYIHSMKNNDLVFGIGPAGTGKTFLAVVFAAKALRAGQVKRLV
                     LTRPAVEAGESLGFLPGDLKEKVDPYLRPLYDGLNTVLGTEQTARLIERGVIEIAPLA
                     YMRGRTLEDAFVILDEAQNTTHAQMKMFLTRLGFGSKMVVTGDKTQIDLPRGVKSGLI
                     EAEQRLKNIKGLAIQHLDQADVVRHPLVGQIISRYEED"
BASE COUNT         1174 a          846 c          684 g         1342 t
ORIGIN      
        1 gtgaccttta gtcgattcaa ttgattaatc aaccgttgac ttttaaaata catccctgca
       61 tattctttat ataacaataa gatgaactta gacatttctt caacaattgc atcttgaata
      121 cgcaatgcat tgattttgtc taacggtaaa tcttttaaaa catacgttaa ataaatggtt
      181 ttatttgata gaggtaatgc atgtggatcg cgatgtgtga cttctgttgc aataatacca
      241 tcaaatttaa aactaaaatg cgtcaacttt gcaggattgg tctcacctgt catgacgcat
      301 ttcgataaat ctacatcaaa gccaaaacga ggcatacatt ttaacatcac aatatttgca
      361 atcagttgtg gtgatacacc ttgttgaaaa cgatcaaaag cgaaatccaa caatcgatac
      421 attgttggat tgatttcatc ggtttccatc gcacgatcaa tcgtttccaa acataaactg
      481 gcataactgt gcgcataaat gtcttggcga agttcataat taagattgag gacgtcaacg
      541 gaagtgagcg tccccatccc tttccactga ttataaataa acaaaccttg tacaaaaatt
      601 tgagttgtag cttggagacc ggatttaatc tttttagcac ggcggaccat gagcggcact
      661 tttgccccat gttcatttaa gatagtaatg attttgtcag actcaccata atcgactgct
      721 tttataatga tgcctttttg tttaacgagc acttcatcac cacctctaat taacgattat
      781 tcatcttcta catagcccat ttgcttaata aagcttgatt tgttacgcca atctttttga
      841 actttcaccc ataaatctaa ataaacttta gaacctagca aatgttcaat atccaaacgc
      901 gcgcgcttac ctacttcttt cagtttttta ccgcctttac caataacgat gcctttttgt
      961 gagtcacgtt ccacatatat gaccgcttca atatgcaccc gatcttcgga ttcctgagtc
     1021 atacgttcaa cgttgacacc aatagcatgt ggaatttcct cactagtcgt ttgtaaaatc
     1081 ttttcacgaa tgagctcact cactacaaat tgttcaggat gatctgaaat ttggccatca
     1141 ggatagtatt gcgggccttc tggtaaatag gatttaagta cattgatgaa atggtcgacg
     1201 ttatgtcctt ctaaagcaga gatagggata atttctgcaa aatccatata acgttgatat
     1261 tgttcgattc ttggcattaa agcatctgga tgaactaaat cgattttgtt cagcactaaa
     1321 aagacaggtg ttttaaccgt ttttaacatt tccataatgt attcatctcc gcgaccaatt
     1381 tcttcattaa cattgaccat aaacatgacc gcatcaattt cagaaagtgt gtttttagca
     1441 actttcatca tatagtcacc taatttatgt tttggtttat gaataccagg tgtatctaga
     1501 aagacgattt gtgcgtcttg ttgtgtcatc acaccttgaa ttttattacg cgttgtttgc
     1561 gctttatccg acataatcgc gattttgtga ccaataacac gattgacaaa cgttgatttc
     1621 cctacattcg ggcgtccaat aatggtcaca aatcctgact tatattcact cataaattta
     1681 aatcctttcc tgaaaatcca tatggtaata gttcggctac tgttgcttca cgcatttcac
     1741 ccgtttggtt cgtcatatac actggcatat cgtcatcaca aagctcatga attacttgtc
     1801 gacaaggtcc acatggtgat gcaagttctg gactgtctac tgtgatagtg attgattcaa
     1861 aatctcctgg tttgtatcct tgcgagattg ccgccactaa tgcggaacgt tctgcacaaa
     1921 tacatgaggg atacgcggca ttttcaacgt tggcgccatg gaaagtttgt ccatctttag
     1981 taactaagta tgcgccaact ttaaattgac tgtatggcgc ataagctttt tgttgtgctt
     2041 ttctaacctc tgtgtaatgt ttatctgtat agcccatgtt tatcttctcc tcttaaaaaa
     2101 atgaaacgaa tttcggtata aaaatgatgc aacctacaat aaatgcaaag agtgatgcaa
     2161 gtaagacact aaatgctgcc acgtctttag catgttttgc gaaaatgtga aaatcttgcg
     2221 tcgccaaatc gacaacatat tctattgcag tattgatagc ttccgtaata atgacaagaa
     2281 atatcgctaa aatgatgaag agccattcta ttgtacttaa tggcagtgcc catcctaaaa
     2341 tgagtattaa gaatgctatg ataagatgat ataaaaagtt tcgatcttta attaaaatcg
     2401 ttcggcaccc ttgaaaggca tatttaaaac ggttgaacat tagtctctcg tcaatccaaa
     2461 ttgatttaaa atgtcttttt ggcgcccaaa catgaccttt tcgtcttctt ctgtcatatg
     2521 atcatagcct aacaaatgta aaaagccatg aagtgctaaa aagccgagtt cacgttcaaa
     2581 agaatgtccg tattgttctg cctgttccgc tgcgacatcc gtacaaataa tgatgtctcc
     2641 taaaacgcgg gggacatcca taccttcaaa aatgtcttcc tcttcttcaa aggcaaacga
     2701 aatgacatct gtgactttat ccttttgacg gtaatcacga ttaatctctt gaatctcagc
     2761 tttatctaca aaagtgacag aaagttcggc gtcttcatca atgccctctt catttttagc
     2821 gaattctaac acatctcgaa tctgtgtgta ccagtcatct ttcacttgat cggtatggtc
     2881 actaaaatca attgtaaaca tcaattagtc ctcctcatat ctactgatga tttgacctac
     2941 tagcggatga cggaccacat cagcttggtc taaatgttga atcgcgagcc ctttaatatt
     3001 ttttaagcgt tgttcagctt caatcagacc acttttaaca ccacgaggta aatcgatctg
     3061 tgttttatct ccagtgacaa ccattttaga accgaatcca agtcgcgtta aaaacatttt
     3121 catctgtgca tgtgtcgtat tttgcgcttc gtctaaaatg acaaacgcat cttctaacgt
     3181 tctaccacgc atgtaggcaa gtggtgcaat ttcgatgacg ccacgttcaa tgagccgtgc
     3241 cgtttgttcc gtccctaaaa cggtatttaa accatcatat agcggacgta aatatggatc
     3301 caccttctct tttaagtcac ctggtagaaa gccaagtgat tcccccgctt ctacggctgg
     3361 acgtgttaag acaagacgtt tcacttgtcc tgcacgtaac gcttttgcag caaaaacgac
     3421 ggctaaaaat gttttacctg ttccagcagg cccaattccg aacactaaat cattattttt
     3481 cattgaatgg atatacatcc gttgtcccat cgttttagct cgaatcgttt tgccgaatgc
     3541 atctttagta atttcctctt cgtacaaatc aatgagatgc tcaatttgtc cgtttttagc
     3601 cattttaatt gcagcttgca catctttaac agtaatagat gccccttgct cgatgacttt
     3661 caataagttg attagcacag attcagcttc tgttacagcg ctgacctttt cgcccttaac
     3721 tgcaacttct tgtcctctgg catgaatgac aacatcaaat gcttcttcaa taagttgaat
     3781 atgttcatca ttgtttccta ataaagcttg tgcttggttg atgtcgtcga tctgaatcaa
     3841 ttccggcata aagtaactcc tttgctcata ttgtttatta tcaatgtatc aaattgtcat
     3901 gtatgatgcg ttttatattt ttgcgactgc tacatactta ttatagcacg tttacgccgt
     3961 ttgttacttg ttattcacat tcaattcata tgttgaaaga taacttgtca gcatttttat
     4021 agggaatcta ttttaacatt ttaaag
//
LOCUS       DANHOL010000174         3940 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.176, whole genome shotgun sequence.
ACCESSION   DANHOL010000174 DANHOL010000000
VERSION     DANHOL010000174.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 3940)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3940)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3940
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.176"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            181..1371
                     /locus_tag="PTC08_002150"
     CDS             181..1371
                     /locus_tag="PTC08_002150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbfB/YjiJ family MFS transporter"
                     /protein_id="HDK5683622.1"
                     /translation="MREIQDLRIHGYRQLALGMIALFIVIALGRFAYTPILPFMQLDT
                     GLDNKSVGLLATFNYLGYLIGAMLPIFYIMKNKVFDLKCYLLLNVATMLLFGVTDHFV
                     IWSLLRLLNGISSGAVFVLASNIVLEALHLARREGIAGLLYSAVGLGLFSSSLFIFLY
                     TDVTHWRETWIWLGSAAFILTLIIIVCLRENPTLPEPASHKAHGPEKVIRYSKKFYIP
                     FAIAYFCEGAGYIITGTFLVAIVKTMPTLSEYAALSWMFVGLGAIPATVLWSMIGQRI
                     GICLSVILAFLLQIVAVLMPIFTVNAFAIALSSMIFGATFLGLTTLFMSKSHQITFET
                     KGNNLVAVMTLIYSVGQMIAPYISGILIERTHSYNDALIFAAAILVVGILSSLYSKRY
                     AHPM"
     gene            complement(1527..2834)
                     /locus_tag="PTC08_002151"
     CDS             complement(1527..2834)
                     /locus_tag="PTC08_002151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HDK5683623.1"
                     /translation="MLLFTIEILIMILAIVLGLRTAGALGCGIFALVAQIVMIFGFGL
                     PPGSAPVTAVLIILSIGIAGGTLQATGGIDYLVHLASKMIERFPKSIIFIAPMIVFVF
                     VFGIGTTNIALSLEPIIAKTALKARIQPKKALTASVLTANIALLCSPAASATAYMISE
                     FAGLGISMGQYLSIVLPTALLSMLVLSCFNTFVGRTKIDEQHAQTMLQKMAVDQEETT
                     KQYDTRVKLGVFAFIVAVGFILLFGIFPEVGPKFQVDGKVVELQMTDLVQLFMYMSAM
                     INLLLVKVQPNQILTTHITQAAIGAIFAVLGPGWLGATIFSAPSNRAMMEDGIGGLIA
                     QAPWLIIILVGLVAMIVISQSATASIMVPIVLSLGIPPMFFIAIVQTLNVNFVIPAQP
                     TILFAVDVDETRSTKVTSFLIPGFFLITTTVVIGLTIKTILGM"
     gene            complement(3024..3887)
                     /gene="galU"
                     /locus_tag="PTC08_002152"
     CDS             complement(3024..3887)
                     /gene="galU"
                     /locus_tag="PTC08_002152"
                     /EC_number="2.7.7.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase
                     GalU"
                     /protein_id="HDK5683624.1"
                     /translation="MKKITKAVIPAAGLGTRFLPATKAMPKEMLPILDKPTIQYIVEE
                     AVRAGIEDIIIVTGKHKRAIEDHFDNQIELEMNLAEKGKDDLLEKVQHATQLANMFYV
                     RQKEQKGLGHAIWTAKQFIGDEPFAVLLGDDIVESETPAIQQLMEEYERTGKSVIGVQ
                     EVPERETHRYGIVDPKNQQERLYEVTQFVEKPVFGTAPSNLAIMGRYVLTPDIFDYLE
                     NQEEGAGGEIQLTDAIERLNQSQQVFAYRFEGERFDVGEKVGFVKTTIQFALRDAEMA
                     DEIRAFLKEVQ"
BASE COUNT         1139 a          830 c          704 g         1267 t
ORIGIN      
        1 ttaataagaa aagtcacacc tttaatgtta ttaacaaaca aaatactcca attttatttt
       61 ttaaaatgtt gccaatcata attttattat aattaattct ataggtatat aattcgttat
      121 tttcataacc ttaaatttcg cgtataatag gaacatcttt accatttagg aggaatccat
      181 ttgagagaaa tacaagatct cagaatacat ggttatcgtc aattagcatt agggatgata
      241 gcactgttta tcgttattgc gttaggccgt tttgcttata caccgatctt accttttatg
      301 cagttggata ctggactgga taacaaaagt gtcggcctgt tagcaacatt taactattta
      361 ggttatttaa ttggtgctat gttacctatt ttttacataa tgaaaaataa agttttcgat
      421 ttgaagtgtt atcttttatt aaatgtcgca acgatgttat tgtttggggt gacagatcac
      481 tttgtcattt ggtcgctcct tcgtttatta aacgggattt ctagtggtgc tgtatttgta
      541 ctcgcatcta atattgtatt ggaagcttta catttagcgc gtcgtgaagg aattgctggt
      601 ctgttatata gcgcagtcgg cctcggttta ttttcgagca gtttatttat tttcctatat
      661 acagatgtga cccattggcg cgaaacgtgg atttggttag gcagtgccgc tttcatttta
      721 acgctcatca ttatcgtgtg tttacgtgaa aacccaacat tacccgaacc tgcatctcat
      781 aaggcacatg gtcccgagaa agtgatacgt tattctaaaa agttttatat tccctttgcg
      841 attgcttatt tttgcgaagg tgccggttat atcattacag ggacttttct cgttgcaatt
      901 gttaaaacga tgcccacgtt atcggaatat gcggcactca gttggatgtt tgtcggactt
      961 ggcgccattc cagctactgt cttatggtca atgattggtc agcgcattgg catttgtctt
     1021 tcagtcatac tcgccttttt attacaaatt gttgcggtac tgatgcctat ctttacagtc
     1081 aatgcctttg cgattgcact cagttcgatg attttcggtg cgacgttttt agggctaacg
     1141 acccttttca tgtcgaagtc gcaccagatt acatttgaaa cgaaaggcaa caacttagtc
     1201 gcagtaatga cattgattta cagtgtcgga caaatgattg ctccttacat ttcaggtata
     1261 ttaatcgaac gtacgcatag ctacaatgat gcactgatct ttgctgccgc gattttagtc
     1321 gtcggaatat tgagtagtct gtacagtaaa cgctatgccc atccaatgta acgtacatta
     1381 atatcaaaaa caccctcaag ctatccgcat ttgatagctt tgggggtgtt tttgatatgt
     1441 ctattgattc attgtcctct tacgttaaaa cttccacacc tcagaatgtg tagcacggtt
     1501 taacaatcca aatctttcac ttttcattac atgcctaaaa tcgtcttaat cgttaatcct
     1561 atcactacag ttgttgtaat taagaaaaag ccaggaatta agaagctcgt tacttttgtt
     1621 gaacgcgttt catctacatc taccgcaaat aaaatcgttg gctgtgctgg aatcacaaag
     1681 ttgacattta acgtttgcac aatcgcaatg aaaaacattg gcggaatgcc taaactcaac
     1741 acaatcggta ccataatcga agcagttgca gattgagaaa tgacaatcat tgctactaaa
     1801 ccgactaaga taataatgag ccacggtgct tgagcaatga gtccaccaat cccgtcttcc
     1861 atcatggcac ggttcgaggg tgcactgaat atcgttgccc ctaaccaacc aggccctaat
     1921 accgcaaaaa ttgcaccaat cgcggcctgt gtaatatgcg tggtcaatat ttggttcggt
     1981 tggactttga cgagtagtag attaatcatc gcactcatat acataaacaa ttgcactaaa
     2041 tccgtcattt gaagttcgac gactttacca tctacttgga atttcggtcc aacttctggg
     2101 aaaataccga agagcaaaat aaagccaact gcgacgataa acgcaaatac acctaacttc
     2161 acacgtgtat catactgttt cgtcgtttct tcttggtcca cagccatttt ttgaagcatc
     2221 gtttgtgcat gttgttcatc aatcttagta cggccgacaa atgtgttaaa acaactgagg
     2281 actaacatgc tcaataatgc agtcggaagt acgatagaaa ggtattgccc cattgaaatg
     2341 cctaagcctg caaattctga aatcatatag gctgttgctg aagctgctgg actacaaagc
     2401 aatgcaatgt tggccgtcaa tacagaagcg gtcaatgctt ttttaggttg aatacgcgcc
     2461 tttaatgctg ttttcgcaat aatcggttct agtgataatg caatattcgt tgtaccgata
     2521 ccgaaaacaa acacaaatac aatcattggt gcaataaaaa taatagattt cggaaaacgt
     2581 tcaatcattt tggaagcgag gtgcactaag taatcaatcc cacctgtcgc ttgtaatgtt
     2641 ccaccagcaa taccgataga taaaatgatc aatactgcag tgactggtgc tgagcccggt
     2701 ggtaaaccaa aaccgaaaat cattacaatt tgggctacaa gtgcaaaaat cccgcaaccg
     2761 agtgccccag cagtacggag gcccaataca atcgcgagaa tcattattaa aatttctatc
     2821 gtaaaaagaa gcatcttttt cttcctcttt tctaaatttt catgtgaaca ttctaacaca
     2881 gttacgttat cactttaata tgtaaaactg caaattcatg tctaaaatag aacaattgca
     2941 tcatattatt gtctcatatg aaaagaactc gatagtcact ttaaataatt tttgcattat
     3001 tacaatatgt gttcaacttg ttatcattgt acttctttta aaaatgcacg aatttcgtca
     3061 gccatttctg catcacgtaa agcaaattga atcgttgttt tgacgaaacc gactttttca
     3121 cccacatcaa atcgctcacc ttcgaaacgg taggcaaata cttgttgcga ctgatttaaa
     3181 cgctcaatcg catcggttaa ttgaatttca ccgccagctc cctcttcttg attttccaaa
     3241 taatcgaaaa tatccggtgt caatacatag cgacccataa tggccaaatt agatggtgct
     3301 gtaccaaaga ctggcttttc aacaaattgc gtcacttcat acaaacgttc ttgttgattt
     3361 ttcgggtcaa caatcccgta acgatgcgtt tcacgttcag gcacttcttg cacaccgatg
     3421 acggatttac ctgtgcgctc atattcttcc atcagctgtt gaatcgctgg cgtctctgat
     3481 tcgacaatat catcacctag caataccgcg aaaggctcgt caccaataaa ttgtttcgcc
     3541 gtccaaatcg catgccctaa ccctttttgc tctttttgac ggacgtaaaa catattcgcc
     3601 aattgtgtcg catgttgaac cttttctaac aaatcatcct tgcctttttc agccaagttc
     3661 atttcgagct cgatttgatt gtcaaaatga tcttcaatcg cacgtttatg tttaccagta
     3721 acgataataa tatcttcaat gcccgcacgt accgcttctt ccacaatata ttgaatcgtc
     3781 ggcttatcta aaatcggcaa catctctttc ggcatagctt tcgtcgcagg taaaaaacgt
     3841 gtacctaaac ctgctgcggg aatcacagct ttcgttattt tcttcattgt gagtttcacc
     3901 ttacttttct atttatttaa cactcatcaa actctagtca
//
LOCUS       DANHOL010000175         3905 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.177, whole genome shotgun sequence.
ACCESSION   DANHOL010000175 DANHOL010000000
VERSION     DANHOL010000175.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 3905)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3905)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3905
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.177"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(218..865)
                     /locus_tag="PTC08_002153"
     CDS             complement(218..865)
                     /locus_tag="PTC08_002153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-sensing transcriptional repressor Rex"
                     /protein_id="HDK5683625.1"
                     /translation="MGKSMNKIPRATLKRLPLYYRFVNTLKAKGEDRVNSKAISEGLN
                     IDSATIRRDFSYFGELGKKGYGYNIDSLLEFFKSELSDSDIIKIGIVGVGHLGTALIS
                     YNFSIHDDMTITEAFDIREDIIGTTVGDITIKSMDDIKETIASGELEVVIITTPESAA
                     QAVTDQLVEAGIKGILNFTPKRVHAPQSVQVHQIDLGIELQSLLFFMKNYGTSEA"
     gene            1019..2971
                     /locus_tag="PTC08_002154"
     CDS             1019..2971
                     /locus_tag="PTC08_002154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HDK5683626.1"
                     /translation="MILMQLSQITKSFDGEEIFEGVNFEVKTGERIGIVGRNGAGKST
                     LMKIIAGVESYDSGHISKIKGLKLGYLTQQMTLNTENTVFEEMAKPFEQVKEIGKRMQ
                     EETDWLAAHAEAYETTEYQTHIAKYEQLSNEFEQLGGYHYDSKIKTVLNGLDFSEADY
                     DRPINDFSGGQKTRLSLAQMLLSEPDLLLLDEPTNHLDMATTEWLEDYLKYFKGAIVI
                     ISHDRFFLDKIVTQIYDVSLGEVKHYVGNYAKFIQLRDQYFQKRLAEYERQQSEIKRL
                     ETFVEKNITRASTSGMAKSRRKMLEKMTRIEKPMLDARSANIQFDFDRNTGNDVMHIQ
                     DLEIGYRTSITAPIRFEINKGDHIGIIGPNGIGKSTLIKTLAKRLPPLSGQIIEGANL
                     KIGYYDQKQAEFRSNKTILDFVWDQYPHMPEKDVRAVLGRFLFTQDEVLKVINDLSGG
                     EKARLQLALLMLERNNVLILDEPTNHLDIDSKEMLEQALKNFEGTLIFVSHDRYFINE
                     LANRIFDLNKTGGHLYLGDYQYYLEKLEQQNALAAYDEQREDNNTSDDSARSQNTYQD
                     QKALRREKRKIERQIEADEQKITELEARITAIDVAMADDTTMNDYEKTQALANERTSI
                     EQSLEQVMTNWEELQLTLSQFEDEMD"
     gene            3334..>3905
                     /locus_tag="PTC08_002155"
     CDS             3334..>3905
                     /locus_tag="PTC08_002155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair protein MutS"
                     /protein_id="HDK5683627.1"
                     /translation="MSSNTFFILLLVVALVGMTLITETVRRIRHQRILTYHLEHFTRF
                     DTTENPHAVYDAYFNSRHTARNTIIDDKTWSDLSMDLLFDKLNATYTSIGENHLYSVL
                     RLQTSLVHYEFLEQLRPYPNQHREIVKRLVDLGKSIYPNYDKDILKQQYQWVYAFLLA
                     MPFVGLMISFFNLGIGLLWICFAFFLNIII"
BASE COUNT         1318 a          716 c          679 g         1192 t
ORIGIN      
        1 cattaagacc gtacacttta atcaagcaat gactgacatc tatcatttat aaccttttcg
       61 ttagttgttt tatttgactt cctcatgaaa ttcaaaaaag gctaggaaat ctctccccta
      121 gcctttgcta taaccgctca tttgcttgta aaaacaaatg atgaagtctc acactttgat
      181 tcatacaaat cactaaaata tttatacttg atttatttta cgcttcagat gtaccataat
      241 ttttcataaa gaagagtaac gattggagtt caatccctaa gtcaatttga tgtacttgta
      301 ctgattgtgg cgcgtgaaca cgtttaggcg taaaattcaa gatacctttg atacctgctt
      361 cgactaattg atcagtcact gcctgtgctg ctgattcagg tgtcgtaata ataacaactt
      421 ctaattctcc tgaagcaata gtttctttaa tgtcatccat cgacttaatc gtaatatccc
      481 cgactgtagt accgataatg tcttctctaa tgtcaaaagc ttctgtaatg gtcatatcat
      541 catgtattga aaagttgtaa gaaattaacg ccgtacctaa gtgaccgaca ccgacaatac
      601 caattttgat aatatctgaa tcacttaatt ctgatttaaa aaattctaat aaactatcaa
      661 tattataacc gtaacctttt ttacctaatt caccaaaata agaaaaatct cgacgtattg
      721 tggctgaatc tatatttaag ccttcactaa tggcttttga attaacacga tcttcgcctt
      781 tcgcttttaa agtattcaca aatctataat acaaagggag acgttttaaa gtcgctctag
      841 gaattttgtt cattgatttt cccattttga agtcctccga tatgatttct aatatatgtg
      901 atagctttca cagtgtgtgt gtttaattat aacttaattt atatgataag gaaacattaa
      961 gtatttgata catatagggt ttgttgtaca ataaataaga atgaaaggag tatgccctat
     1021 gattttaatg cagttaagtc agattacgaa atcgtttgat ggcgaagaaa tttttgaagg
     1081 cgttaatttt gaagtgaaaa caggtgagcg cattggtatc gtaggtcgaa acggtgcggg
     1141 aaaatccaca ttgatgaaaa ttatcgcagg tgtagaatca tatgactcag gccacatctc
     1201 aaaaatcaaa ggtctaaaac tcggctattt aacacaacaa atgactttaa atactgaaaa
     1261 tacagttttt gaagaaatgg caaaaccgtt tgaacaagtg aaagagattg gcaaacgtat
     1321 gcaagaagaa accgactggc ttgctgcaca tgcggaagct tatgaaacga cggaatatca
     1381 aacgcatatc gcaaaatatg aacaattatc taatgaattt gaacaactcg gaggctatca
     1441 ttatgacagt aaaatcaaaa ctgtgttaaa tggccttgat tttagtgagg ctgattacga
     1501 ccgacctatt aatgatttta gtggaggtca aaaaacacgg ctctcactcg cgcaaatgtt
     1561 attgagtgag ccagacttgc tattactcga tgaaccgaca aaccatttag acatggcaac
     1621 aacagaatgg ttagaagatt atttgaaata ttttaaaggt gctatcgtca ttatttcaca
     1681 tgaccgcttc ttcctcgata aaattgtgac gcaaatctat gacgtctctc taggcgaagt
     1741 gaaacattat gtcggcaatt atgcaaaatt tattcagtta cgtgatcaat actttcaaaa
     1801 gcgactcgcg gaatatgaac gccaacaaag cgaaatcaaa agactagaaa cgttcgtcga
     1861 aaaaaatatt acccgtgcat ctacaagcgg tatggcgaaa agtcgtcgta aaatgttaga
     1921 aaaaatgacg cgtatcgaaa agcccatgct cgatgcgaga agtgcgaaca ttcaattcga
     1981 tttcgatcgc aatacaggca atgacgttat gcatatccaa gatttagaga taggttatcg
     2041 tacatcgatt acagcaccga ttcgttttga aattaataaa ggcgatcaca ttggcattat
     2101 cggaccgaat ggtattggga aatcgacatt aattaaaact ttagcgaaac gacttccccc
     2161 tctctccggt caaattattg aaggtgctaa tttaaaaatt ggttattacg accagaaaca
     2221 agcagagttc cgttctaata aaaccatttt agattttgtc tgggaccaat accctcatat
     2281 gcctgaaaaa gatgttcgtg cggtgttagg acgcttttta tttacacaag atgaagtgct
     2341 caaagtgatt aatgaccttt ctggtggcga aaaagcaaga ctccaactgg cattattaat
     2401 gttagagcgt aataatgtac tcattttgga cgaaccgaca aaccatcttg acatcgactc
     2461 aaaggaaatg ttagaacaag cattaaaaaa ctttgaaggg actttaattt tcgtatcaca
     2521 cgatcgttat tttattaatg aacttgccaa tcgtattttt gatttaaata agacaggcgg
     2581 ccatctgtat ttaggtgatt accaatatta cttagaaaag ctagagcaac aaaacgccct
     2641 tgctgcatac gatgaacaac gtgaagacaa caataccagt gacgactcgg cccgttcaca
     2701 aaatacgtat caagaccaaa aagcgttacg tcgtgaaaaa cgtaaaatcg aacgccaaat
     2761 cgaagcggat gaacaaaaaa tcacggaatt agaagcacgt atcacagcaa ttgatgttgc
     2821 aatggccgat gatacaacaa tgaatgatta tgaaaaaaca caagctttag ctaacgaacg
     2881 aacaagtatc gaacaatctt tagaacaagt gatgacaaat tgggaagaat tacaactcac
     2941 attaagtcaa tttgaagatg agatggattg agcgtggtgg aattttctac tccgctcatt
     3001 ttctatactc gaaatacaga caattcatcc acattaagaa tcggataata tcaactatcc
     3061 acaaagttat tctagttatc cacaatttag gagaggtttt cttcttactt tatgcacact
     3121 tatccccact ttatccacga aaatgcatcg aacttacaca caagttattc acaaaatgtg
     3181 cataagtacg cacgttccct cttgacagat ttcctactac atgaatttga aatcatgtcc
     3241 caatgattca aacgctttca caatttattg atttcctcat catattgtgt aaaaatttat
     3301 atgatcttaa aaatattgaa aggatttata catatgagtt cgaatacttt tttcatttta
     3361 ttgcttgtgg tggcactcgt tggtatgaca ttgataacag aaactgtgcg tcgtatccgc
     3421 catcaacgta tattgactta ccatttggaa catttcacac ggtttgatac aaccgaaaat
     3481 cctcacgctg tttatgatgc atatttcaat tctcggcata ctgctagaaa tacgataatc
     3541 gacgacaaaa catggtcaga tttatcaatg gatctcctat ttgacaaact caatgcgaca
     3601 tacacgtcca taggtgaaaa tcatttatat agtgtattac gattacaaac gtcactcgtt
     3661 cattatgaat ttttagagca gctgcgtcca tacccgaatc agcatcgaga aatcgtgaaa
     3721 agactcgttg acctcggaaa gtcgatttat cccaattatg acaaagacat attaaaacaa
     3781 caatatcagt gggtttatgc atttttactt gctatgccgt ttgtaggcct tatgattagt
     3841 tttttcaatt taggtattgg tcttttatgg atttgttttg ctttctttct caatattatt
     3901 attag
//
LOCUS       DANHOL010000176         3840 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.178, whole genome shotgun sequence.
ACCESSION   DANHOL010000176 DANHOL010000000
VERSION     DANHOL010000176.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 3840)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3840)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3840
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.178"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            1..132
                     /locus_tag="PTC08_002156"
                     /pseudo
     CDS             1..132
                     /locus_tag="PTC08_002156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165889.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1381 domain-containing protein"
     gene            212..355
                     /locus_tag="PTC08_002157"
     CDS             212..355
                     /locus_tag="PTC08_002157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020220176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683628.1"
                     /translation="MKYIITTAMILYIAYDYYIRLTANDDVDTFNEYDHAHLNNLQAE
                     VSD"
     gene            356..721
                     /locus_tag="PTC08_002158"
     CDS             356..721
                     /locus_tag="PTC08_002158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002469495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683629.1"
                     /translation="MEWVGFIFSIVVLGFLVPLIYSRLKAEERIKELQKDKLSLEKEV
                     YSLKNKCNTCNGKGYLVELNDKAYLKKRPIGFYINTYIITDNAFEALLYDDLELARKD
                     ANNFGGRVLQHKPNLEVVK"
     gene            861..1283
                     /locus_tag="PTC08_002159"
     CDS             861..1283
                     /locus_tag="PTC08_002159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020220179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDK5683630.1"
                     /translation="MTEIKPGTFRYIESEIYNLEHTKQDIKRLRLEILNPMQSADENI
                     VYGPLQSGEPTRTTELMATRLMTNRMLRNQEEMVQAIERTYSKLSDDYKKVIYLKYWA
                     PQKYKMEHIADECHMHRNTAGKIRKNFVKAVALEVGMK"
     gene            1410..1715
                     /locus_tag="PTC08_002160"
     CDS             1410..1715
                     /locus_tag="PTC08_002160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000988331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HDK5683631.1"
                     /translation="MRDKSKRKQFYKSKAWNNVRQRVLARDNYECQECKKNGIVTTNN
                     PEKHKTLDVDHIKELEFYPDLALEMDNLITLCIKCHNKKHNRYQKRKRKQRWNDEWW"
     gene            1839..2222
                     /locus_tag="PTC08_002161"
     CDS             1839..2222
                     /locus_tag="PTC08_002161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683632.1"
                     /translation="MERNQEEIKQHEARVEKEKKRLDKIFKSIPEDKKRVAQGLIVQA
                     ARMRVLLDDAWLDIQEKGDYELFTQSENTPAYERERPIAKLFNSRDAAYQKIIMQLSK
                     LLPDEIEVVVDKETGNLRSLLNENK"
     gene            2209..>3840
                     /locus_tag="PTC08_002162"
     CDS             2209..>3840
                     /locus_tag="PTC08_002162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009917708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase large subunit"
                     /protein_id="HDK5683633.1"
                     /translation="MKINKHVKWYIDKYKHGEIKLNSDRIKLIDHLETNVLCRDGLYF
                     DNDQIELCIAFIERFYFKLQPFQKFLIAFVFLFDEEDELYFEQFFWLVARGAGKNGLI
                     SGLSTYFISELHGIDNYDGTVVANTEKQAKTSFEEMHRMIIKHGLYEGNINDVEGEGV
                     FDLTKQRITSTQTQSKFEFATSNAGSKDGGREGFIIYDEIHRYENNDIVDVFSSGLGK
                     VKHPREFFIGTDGFVREGFLDKMKERSKEILEGRATDDRLFPFICRLDKREEKDDPST
                     WSKANPMFEEPMSGYGKRLFRKVLNQYHDLKHSPSGYENFMTKRMNLPEEDSSKIVAS
                     RDEVLATNRDIPPLKNKTAIGGVDYASIKDFAAVGLLFKQGDNVVWLSHSFARKEYLD
                     QAQLKPPIKEWERQGHLTIVDEPSINPAHIVNWFIKMREKYAIQKVVADNFRMDLMRP
                     LFEEAGFEIEVLRNPKGVHSKLAPRIETLFANHRIIFGDNPLMRWYTNNVAVQVKKDG
                     NKEFIKKDEHRRKTDGFHAFLHALYSIDEIQEIDLD"
BASE COUNT         1413 a          543 c          793 g         1091 t
ORIGIN      
        1 cagtatttaa taacaacatt cacagactca acaggtcaaa cattcacaga agcaactaaa
       61 gccagagaga atcaaacgtt tagtgttgtg ttagcagata gtaaggaaga agcgttgagt
      121 aaatataaaa aagaagtatt tattaatagt ttccgcttag ctaacaaagg tgtcagggac
      181 ttccgaaata aatttggggg gggacgaata aatgaaatac atcatcacaa cagcaatgat
      241 tttatacatt gcgtacgact attacattcg tttaacagcg aatgatgatg tagatacatt
      301 taatgaatac gatcatgcac atttaaataa tttacaagcg gaggtatcag actaaatgga
      361 atgggtagga tttattttta gtattgtagt gttgggtttt ttagtgcctt taatatatag
      421 ccgattaaaa gcagaagaga gaattaaaga gttgcaaaaa gataagttga gtttagaaaa
      481 agaagtgtat tcgttgaaaa acaaatgtaa cacatgtaat ggaaaaggtt acttggtcga
      541 gttgaatgac aaagcgtatt tgaaaaaaag acctataggt ttttatataa acacatacat
      601 tataactgat aatgcgtttg aagctttatt gtatgacgat ttagaattag ctaggaaaga
      661 tgcgaataat tttggtgggc gcgtattaca acacaagcct aatttagagg tggttaagta
      721 aatgtggatt atcatatcgg taatattagg cattctgtta cttatcgaaa tgaggattag
      781 ttcaagtctt aaaaaagagt tagagattta tcgggatgct tatattaaat taagaaatgc
      841 tattattaat ggagggaaac atgactgaga ttaaacctgg aacatttaga tatatcgaat
      901 cagaaatata taacctcgag catactaagc aagacattaa acggttacga ttagagatac
      961 ttaatcctat gcaatcagca gatgagaata tcgtgtatgg tccgcttcaa tcaggtgagc
     1021 cgacacgtac tactgaactg atggcaacac gtttgatgac taatagaatg ttacgaaatc
     1081 aagaggaaat ggtacaggca attgaacgta cgtatagcaa actatcagat gattacaaga
     1141 aagtcatcta tcttaaatac tgggcgccac aaaagtataa gatggaacac attgctgatg
     1201 aatgtcatat gcatcgtaat actgcaggca aaatacgtaa gaactttgtt aaggctgtcg
     1261 cgttagaagt aggaatgaaa taagcgtgtg catagcgtgt gcatagagcg tattatttca
     1321 tggtattata gtagtgtgga aatcaaagaa catactatat tatttaggac tggggatata
     1381 cctcggtcct tttgttatgg tgaaaggtta tgagagataa atcaaagaga aaacaattct
     1441 ataagtcgaa ggcatggaac aatgtcagac aacgtgtgtt agcaagagat aactatgaat
     1501 gtcaagaatg caaaaagaac ggcattgtta caacaaataa tcctgaaaag cacaaaactt
     1561 tagatgtaga tcacattaag gagttagaat tttatcctga tttagcttta gaaatggata
     1621 acttaataac actgtgtata aagtgtcata acaaaaaaca caatagatac caaaaaagga
     1681 aaagaaaaca aagatggaat gatgagtggt ggtaaatccc ccccacctaa aagtttttaa
     1741 ttatatttta ttcttgggga acggggcggg gactcttctc tccacattca ttgtaaaaaa
     1801 ttcacatacg accccctaga agaaagaagg tgactaaaat ggaaagaaat caagaagaaa
     1861 ttaaacaaca tgaagcaaga gtagaaaaag aaaagaagcg actcgataaa atattcaaat
     1921 caattcccga agataaaaag cgcgttgcgc aaggattaat tgttcaagct gcaagaatgc
     1981 gcgttttact agatgatgct tggttagata ttcaagaaaa aggcgattac gaattattca
     2041 cccaatctga aaacacgcca gcatacgaac gagaacgtcc gatagccaaa ttgtttaatt
     2101 cacgtgatgc agcttatcaa aaaatcatca tgcaattgtc aaaacttctt cctgacgaaa
     2161 tagaggtagt agttgataaa gaaactggca atttaaggag tttgttaaat gaaaataaat
     2221 aaacatgtta aatggtatat cgacaaatat aagcacggtg agattaaact taatagtgac
     2281 agaataaaac tgattgacca tttagaaact aatgttttgt gtagagatgg attgtatttt
     2341 gataacgatc aaatcgaatt atgtattgct ttcatcgaac gattctattt caagttacaa
     2401 ccttttcaaa aattcttaat agcgtttgtc tttttattcg atgaagaaga tgaactttat
     2461 tttgaacaat ttttctggtt ggttgctcgt ggcgcaggta aaaatggttt aatcagtgga
     2521 ttatcaacat attttattag cgaactgcat ggtatcgata attatgatgg tactgttgtt
     2581 gcgaacacag agaaacaagc taagacgtct tttgaagaaa tgcatagaat gattatcaag
     2641 catggtttat acgaaggtaa tataaatgat gtagaaggtg aaggagtatt tgaccttact
     2701 aaacaacgta taacttcgac tcaaacacaa agtaagttcg aattcgcaac gagtaatgca
     2761 ggaagcaaag acggtggtcg tgaaggtttt atcatttatg atgaaattca tagatacgaa
     2821 aacaacgata ttgtagatgt attctctagt ggtttaggta aagttaagca ccctagagag
     2881 ttttttatag gcactgatgg atttgtgcgt gaagggttcc tagataagat gaaagagcgt
     2941 tctaaagaaa tattagaagg acgtgcgact gatgaccgtt tgtttccgtt tatctgtcga
     3001 ttagacaaac gggaagaaaa agacgaccct tcaacatggt ccaaagcaaa cccaatgttc
     3061 gaagagccta tgagtggtta cggcaaacgt ctttttcgta aagtattaaa tcaatatcac
     3121 gatttaaaac atagtcctag cggttatgaa aactttatga ctaaacgcat gaacctacct
     3181 gaagaagatt ctagtaagat tgtcgcttca cgtgatgagg tacttgccac aaatcgtgat
     3241 ataccaccac taaaaaataa aacagctata ggtggcgtgg attatgctag tattaaagat
     3301 tttgcagctg taggtttgtt gtttaaacaa ggcgataacg ttgtttggct ctctcactca
     3361 tttgcgcgta aagagtattt ggaccaagca cagttaaagc ctcctatcaa agagtgggag
     3421 cgacagggac atttaacaat tgtggatgaa ccatcaatta atccggcgca tatcgtgaat
     3481 tggtttataa aaatgcgcga aaaatatgcg attcaaaaag tcgtggctga caatttccgt
     3541 atggatttaa tgcgtccttt attcgaagaa gccgggtttg aaattgaagt gttaaggaac
     3601 ccaaaaggtg tacatagtaa actagcacct cgtatagaaa cgttatttgc aaaccacaga
     3661 attatattcg gagataatcc tttaatgcgg tggtatacaa ataatgttgc tgttcaagtt
     3721 aaaaaagatg gtaataaaga gtttattaaa aaagatgaac acagacgtaa aactgatgga
     3781 tttcatgctt tcttacatgc tttatatagt atagatgaaa tacaagaaat tgatttagat
//
LOCUS       DANHOL010000177         3835 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.179, whole genome shotgun sequence.
ACCESSION   DANHOL010000177 DANHOL010000000
VERSION     DANHOL010000177.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 3835)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3835)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3835
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.179"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            59..1051
                     /locus_tag="PTC08_002163"
     CDS             59..1051
                     /locus_tag="PTC08_002163"
                     /EC_number="6.3.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoate--protein ligase"
                     /protein_id="HDK5683634.1"
                     /translation="MKFINNQNHTDPTLNLAMEEYVLKTVPMDDDDSYFLFYINRPSI
                     IVGKNQNTIEEVHQPYIETHVIDVVRRISGGGAVYHDFGNLNFSFITKDDGDSFHNFK
                     KFTQPIVEVLNDLGVKAELTGRNDIQVGQAKISGNAMVKVKDRMFSHGTLMLNSDLDE
                     VQNALRVNPAKIQSKGVKSVRKRVANIQEFIDEPLDIETFKAIILKKLFGEAEVESYT
                     LTEEDWKNIEKLSNEKYRTWDWNYGKNPKYNFEREHKFEKGFVQIKLDVKKGRIAHAK
                     IFGDFFGEGDVAELENALTDILHQRAAIQEALKDYDLYHYFGDIPRDDLIDMMV"
     gene            complement(1273..1491)
                     /locus_tag="PTC08_002164"
     CDS             complement(1273..1491)
                     /locus_tag="PTC08_002164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017464422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IDEAL domain-containing protein"
                     /protein_id="HDK5683635.1"
                     /translation="MKNQTDVKKQMVADPVRTINQLGVELVIAHALKNQRKQKLQHLI
                     DEALVNKNEQAFLKYTDEYLELEAVNGE"
     gene            1728..2345
                     /locus_tag="PTC08_002165"
     CDS             1728..2345
                     /locus_tag="PTC08_002165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="competence protein ComK"
                     /protein_id="HDK5683636.1"
                     /translation="MDQKSNIMYAISKGDMFLRPVDGPDGALTSTEIYRYDGDHFIIH
                     DRAQRIIERSCRHYGESYSGRKAQAKRIANISNKTPILLTPIYQTYFFPTHSDRVPEN
                     SWLNMHYVVKLKPLKGARCKVTFANDLTVTLPISHHSVKHQFLNCVYFAYLVGRSNQV
                     QTHNPEKPIDYDQQPFNIFEALSQYALLENAKRELEEKKKKTTYL"
     gene            2558..2632
                     /locus_tag="PTC08_002166"
     tRNA            2558..2632
                     /locus_tag="PTC08_002166"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2590..2592,aa:Asn,seq:gtt)
     gene            2634..2722
                     /locus_tag="PTC08_002167"
     tRNA            2634..2722
                     /locus_tag="PTC08_002167"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2669..2671,aa:Ser,seq:gct)
BASE COUNT         1250 a          668 c          705 g         1212 t
ORIGIN      
        1 cgaattaaat catgcataac ataagtaagg gcatattggg ggaaaggagt gtttatgagt
       61 gaagtttatt aataatcaaa accatactga tccaacatta aacttagcaa tggaagagta
      121 cgtattaaaa accgtaccta tggatgacga cgatagttat tttctatttt acattaacag
      181 accgtccatc attgtgggaa aaaaccaaaa tacgattgaa gaagtacatc aaccttacat
      241 cgaaacacat gtgattgatg tcgtacgccg tatttctggg ggtggcgcag tgtatcatga
      301 tttcggtaat ttaaatttca gctttattac taaagatgat ggcgatagtt ttcataactt
      361 caaaaaattc acacagccga ttgttgaagt gctcaacgat ttaggtgtaa aggctgaact
      421 cacaggccgc aatgacattc aagttggtca agctaaaatc tctggtaatg cgatggtcaa
      481 agtcaaagac cgtatgttta gtcatgggac acttatgttg aacagtgatt tagatgaagt
      541 gcaaaatgca ttgcgtgtca atcctgcaaa aattcaatca aaaggcgtca aatctgtccg
      601 caaacgtgtc gctaacattc aagaatttat agatgagccg cttgatattg aaacattcaa
      661 agccattata ctcaaaaaat tgttcggtga agcagaagtc gaatcttata ctttgacaga
      721 ggaagattgg aaaaatattg aaaagttaag caacgaaaaa tatcgcacgt gggactggaa
      781 ttacggtaaa aatccaaaat ataactttga acgcgagcat aaatttgaaa agggttttgt
      841 tcaaattaaa cttgatgtca aaaaaggtcg tattgcgcat gctaaaattt tcggggactt
      901 tttcggtgaa ggtgatgtag ctgaacttga aaatgcactg acagacattt tacaccaaag
      961 agcagccatt caagaagcgc tcaaagatta cgatctttat cattattttg gcgacattcc
     1021 tcgtgatgac ctcattgaca tgatggttta atacatgtag atcacactgt tattaatcat
     1081 attgtatatt aacttcatct gattccgagt caaatgtggc atatttcact tccgttaaaa
     1141 gtgtaaatat tctcttattg gttgatttct ggatataaga tggttaaaaa ttgaacatat
     1201 cgacgtaaaa acaggactac ctcatacatg acggatagtc ctgtttaatt tgaagatgtg
     1261 gatgcacttt gactactcac cgttgactgc ctccaactct aaatattcat cagtatactt
     1321 tagaaatgct tgttcatttt tattaaccaa tgcttcatca attaaatgct gcaatttttg
     1381 cttcctttga ttcttcaatg catgtgcaat cacaagttca acgcccagct gattaatcgt
     1441 acgtaccggg tcagcaacca tttgtttctt tacatcagtt tgatttttca tgttgagtca
     1501 ctcctttgtg ttaaatgcat agtattaagt tatttaatag tataacgaaa catgtcgcaa
     1561 aacgcaacga attttctgaa tttttaaagt aattaagtca aatttttatc tgctttttgt
     1621 aatattatcc atatatttac aaaacggcat tgacttagtt cagaatattc atataataag
     1681 aattagacag agagacccga caccttaaga gataggaggg ttctattatg gaccaaaaat
     1741 ccaacatcat gtatgcaatt agtaagggag atatgttttt gagaccagta gatggtcctg
     1801 atggtgcact cacgagtacg gaaatctata gatatgatgg tgatcatttt attattcacg
     1861 atcgtgccca acgtattatt gagcgcagtt gtagacatta cggtgaatcg tactcaggaa
     1921 gaaaagcaca agctaaacgt atcgccaata tctctaacaa gacacccata ttgctcactc
     1981 caatttatca aacctacttt ttccccactc actcggatag ggttcctgaa aatagttggc
     2041 tgaacatgca ttacgtagtc aaacttaaac cattaaaagg cgcccgttgt aaagtcactt
     2101 ttgccaatga tttaactgtc acactgccta tttcgcatca tagtgttaaa catcaatttt
     2161 tgaattgtgt ttattttgct tatttagtag gaaggtctaa tcaagtacaa acacataatc
     2221 ctgaaaaacc tattgattat gaccaacaac cttttaatat ttttgaagca ctatcgcaat
     2281 atgctttatt agaaaatgca aaaagagaat tagaagaaaa gaagaaaaaa acgacttacc
     2341 tgtagctatg ttattttgaa ttttgtattg aataaattat gattgtatga cttgcgagaa
     2401 aacgcaacat gtttcatcta gactatttat tcaacaaagt gtaaagttag cggaatttat
     2461 atacgcatag tgtaaatgtt ccgttaactt ttttgttatt aacccttgat ttctccaatg
     2521 atgttgatat aataatattt gtgattgaaa aagttattcc acagtagctc agtggtagag
     2581 ctatcggctg ttaaccgatc ggtcgtaggt tcgagtccta cctgtggagc catggaaacg
     2641 tactcaagtt ggctgaagag gcgcccctgc taagggtgta ggtcgcgaaa gcggcgcgag
     2701 ggttcgaatc cctccgtttc cgctaggacg tcaaaaaagt ttaaaatgct tttttgacgc
     2761 ttttttattt cttcgtcaaa cccagtcgta tcaagggttt caggagatta taaaaataag
     2821 agacaaactt tgtttaacta cctttaactt agttttaaaa atttttcggc acaatgtgac
     2881 tagataatga ctaaaaaatt atcattttag tcacaagcat tttatcaatt agtcacatcg
     2941 ttttatactc agataaaatt acaaaattgg acggtctagt tcagtaatgt caatttcact
     3001 tattgaaccc ttgacaaatc gtaggaaagg gactgggaca tgatgatttc ccagtctctg
     3061 cttctattta tggattgata tccattaatg gtgattaaac tgttgaaaaa taagggtgta
     3121 tgtaaaaaat gatgcgattg ttttcttgat ttcatcaact tgcaagcagt tgcgcagtat
     3181 ttgaaatatg attgcccaga aggctgagac gcctgaggga taagttaaag gctaaacaac
     3241 gtcatttaac tttaaaagtg gctaccgttt aacgcagtag ctgtctgact tctcaatgcg
     3301 catgcttttg agaagtctag tcagccttgt gggggcagta cgacgaaatc tttgttacac
     3361 atgagattcc tgtactgctc ccaaaatcca attcggcttc aaacaagtgt tgacttcaat
     3421 caagccgaat tgagttggag ggtcagcccc taggaaaggg aagccatgat ggcaatcaaa
     3481 aaccgaaaat cgtagggagg gcaagtttaa caaaatattg catcaatcgc ttcaaaagtt
     3541 tttatgtccc gccccctttt ttattttatg catgtcaaaa caccacgata tcaaggactt
     3601 gaaattgtta cggcaaaatt cctaaaaatt tagtttgagt atagttaaat ttatttttta
     3661 ggaatttagg tcacaagcga gtcacgcgac cttttcatat ttacaatata catttcaaaa
     3721 aagagcgaaa attgcctgtt ctacaatcaa attgctttat agctccatac ttacaccctc
     3781 ttttttctta catcgaatcc atcagtttgt tatcctttct taatattaat aaata
//
LOCUS       DANHOL010000178         3820 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.180, whole genome shotgun sequence.
ACCESSION   DANHOL010000178 DANHOL010000000
VERSION     DANHOL010000178.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 3820)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3820)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3820
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.180"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            <1..398
                     /locus_tag="PTC08_002168"
     CDS             <1..398
                     /locus_tag="PTC08_002168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_086037612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="leukocidin family pore-forming toxin"
                     /protein_id="HDK5683637.1"
                     /translation="QNSKNIRWEVKANSFNTENGQVSAYDRHLFVRSPIGPNARDFFV
                     PNDELPPLIQSGFNPSFIATVSHEKDKGDTSEFEIAYGRNLDITYATFFPRTGIFAER
                     RHNALMNRNLVTKYEVNWKTHEIKVKGHN"
     gene            400..1380
                     /locus_tag="PTC08_002169"
     CDS             400..1380
                     /locus_tag="PTC08_002169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_086037611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leukocidin/hemolysin toxin family protein"
                     /protein_id="HDK5683638.1"
                     /translation="MKISKVIKAATATSVALMLFSNPVYAANQITPVSEKKVDDKITL
                     YKTTATADSDKLNISQLLTFNFIKDKSYDKDTLVLKAAGNINSGYKSPNPNDYIYSSF
                     YWGAKYNVSISAESKGAVNVVDYAPKNQNEEFQVQNTLGYSFGGDISISKGLSGGLNG
                     SESFSETINYKQESYRTTIDKHTDNKTIGWGVEAHKIMNAGWGPYGRDSFHDLYGNEL
                     FLGGRQSKLNAGQNFLPTSQMPLLARGNFNPEFLSVLSHKPNGAKTSKIKVTYQREMD
                     EYTNYWNGFHWMGTNYKNQNNATFTSFYEIDWDQHTVKLIKTHSDEKNPS"
     gene            complement(1439..2023)
                     /locus_tag="PTC08_002170"
     CDS             complement(1439..2023)
                     /locus_tag="PTC08_002170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4355 domain-containing protein"
                     /protein_id="HDK5683639.1"
                     /translation="MKEQWLKLSLQFFNDAGTEEAVSDENVETEPTQEVEELSESQMK
                     LVNDRVNKELHRRTKEMRQQIQDELTEKQKEADKLRKMNAEQKHQYELEKAEKERDDY
                     KQQLESYKMRQEAMAMFNDAGMQAPESLLNMVVQDTAEATKEAVDSFVSMVNQEVQRQ
                     LESKATQNHVVGNHVTTPNNNKNTPQKVELNSPF"
     gene            complement(2201..2395)
                     /locus_tag="PTC08_002171"
     CDS             complement(2201..2395)
                     /locus_tag="PTC08_002171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LSM domain protein"
                     /protein_id="HDK5683640.1"
                     /translation="MKLWTYVGKKVKIELTNGKIFIGRAAGYDDEMDNESGEDSIHLD
                     SGKLLYDFDESEIKSIEILD"
     gene            complement(2392..3768)
                     /locus_tag="PTC08_002172"
     CDS             complement(2392..3768)
                     /locus_tag="PTC08_002172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="minor capsid protein"
                     /protein_id="HDK5683641.1"
                     /translation="MKVSFKSKKSNLNDYWLERAQQAIQSETLEDAAKVAEIERIIAM
                     MIADIYKNLLAYYGKLVTAEGIDWREAKQIVDKFDVEAFQMQAKAYVENKDFSDKANK
                     ELKRYNTAMYVNREQLLKHELGLIVTKAYAEQAKVVNHHLQDSVTRTLKHQAGILGAD
                     VHVKQSDVEAIVYSNFGKLNWSERLWNNQDGLRKDVERMASHVMLRGRHPYEFVPEIR
                     KKQKQTVANTKRLLITEVARVQTEAQKLHYLETMGDDAEYEFVAKRDEKTSKICRHYD
                     KKVFKVKDMVPGVNAPPMHPHCRSTTVPYVGNWRDDFFKKRKGKYKLDEEETTQLLAK
                     KEMTDAIDSGKIKVELNVEKQNRHQLGHQLYEDYKKKNLQKGKAIPSYTLLDNSELNS
                     LIHQKAGKGSLIADDFGNWKNKEIIDFGKIIGKDYIDGEFIETKRGTVHYSKTGSHII
                     PNGKGEKR"
BASE COUNT         1144 a          796 c          582 g         1298 t
ORIGIN      
        1 aacaaaattc aaaaaatatc agatgggaag tcaaagcaaa ttcatttaat acagaaaatg
       61 gacaagtatc agcatatgac agacacttat ttgtaagaag tcctatcggg ccaaatgcaa
      121 gagacttttt tgtgccaaat gatgagttac ctcctttaat tcaaagtggt tttaatccat
      181 cgtttattgc aactgtatct catgaaaaag ataaaggcga tacaagtgaa ttcgaaattg
      241 cttatggtag aaatctagac attacgtatg caactttctt cccaagaact ggcatatttg
      301 ctgaaagacg tcataatgct ttaatgaatc gaaatcttgt cactaaatat gaagtgaact
      361 ggaaaacaca cgaaattaaa gtaaaggggc ataattaata tgaaaataag caaagttatc
      421 aaagctgcta ctgcaacatc cgtggcattg atgttatttt ctaatcctgt ctatgccgct
      481 aatcaaatta cacctgtatc tgaaaaaaaa gtagacgata aaatcacttt atataagact
      541 accgctactg cagattcaga taagttaaat atttctcaac tcttaacttt taattttatt
      601 aaggataaga gctatgataa ggatacctta gtacttaaag ctgcaggtaa tattaactca
      661 ggttataaaa gccctaaccc taacgactat atctattcaa gtttttattg gggggctaag
      721 tataatgtgt caatcagtgc agaatcaaaa ggtgctgtta acgtagttga ttatgcacca
      781 aaaaatcaaa atgaagagtt tcaagttcaa aacactctag gctactcttt tggaggagac
      841 attagtatct ccaaaggttt gtcaggcggt ttgaacggct cagaatcatt ttcagaaaca
      901 ataaactata aacaggaaag ttatagaaca actatcgata aacacacaga taataaaact
      961 attggctggg gcgttgaagc acataaaatc atgaatgctg gttggggccc atatggtcga
     1021 gatagcttcc atgacctata tggaaatgaa ttgtttttgg gtggtagaca aagtaaatta
     1081 aacgctggac aaaacttctt acctacgagt caaatgccac ttttagcaag aggtaacttt
     1141 aatcctgaat ttttaagtgt attatcacat aaaccaaatg gcgctaaaac atcaaaaatt
     1201 aaagtcacgt atcaaagaga aatggatgag tatacaaatt attggaatgg ctttcattgg
     1261 atgggtacaa actataaaaa tcaaaacaat gccacattta catcatttta tgaaattgat
     1321 tgggatcagc atacagtaaa actaatcaaa acacattctg atgaaaaaaa cccatcataa
     1381 tttaaatttg atatatcaat aattcaaata ttttcaaagt gatattttgt aatacgccct
     1441 aaaaaggaga attcaattct actttttggg gtgtattctt attattattc ggtgtcgtca
     1501 catgattccc aacaacatgg ttttgtgtcg ctttactttc taattgacgc tgcacttcct
     1561 gattgaccat cgaaacaaag ctatctacag cttcttttgt tgcttctgct gtatcctgaa
     1621 caaccatatt caataaagat tcaggggctt gcatacctgc atcattaaac atcgccattg
     1681 cctcttgacg catcttgtat gactcaagtt gttgtttata gtcatcacgt tctttttcag
     1741 ccttttcaag ctcgtattga tgcttttgtt cggcattcat cttacgtaat ttatcagctt
     1801 ctttttgctt ctcagtcaat tcgtcttgaa tctgttgacg catctctttc gtacgacgat
     1861 gcaactcttt attcacacga tcattcacta acttcatttg agactcagac agttcttcaa
     1921 cttcttgtgt cggttcagtt tcaacattct catcactcac ggcttcctca gtacctgcat
     1981 cattaaaaaa ctgtaagctt aactttaacc attgttcttt catattttgc acctctttta
     2041 aatctactct tgcaagtttt atgtcattgc atgttttgga ctacacttgc atcttttaac
     2101 gccataagca cggtttgggc ataaaaaata gccactgcac cacagtagct taaaaatgcg
     2161 tataaaaata gcacctcaac cattattatc ggttaggtgc ttaatctaaa atttcaattg
     2221 attttatttc gctttcatca aaatcatata atagtttgcc actatctaaa tgtatagaat
     2281 cttctccact ttcattatcc atttcatcat cgtaaccagc ggctctcccg atgaatattt
     2341 ttccgttagt taactctatc tttacttttt ttcctacata tgtccatagt ttcatcgctt
     2401 ttcacccttt ccgttcggta ttatatgact tccagttttc gagtagtgta ccgttcctcg
     2461 ttttgtttct ataaattcac cgtcaatata atctttaccg ataatcttac caaaatcaat
     2521 aatttcttta tttttccagt tcccaaagtc atccgcgatt aaactacctt tacccgcttt
     2581 ttgatgtatt aatgaattta attcactgtt atctaatagc gtataacttg gtattgcctt
     2641 acctttttgt aaattctttt tcttataatc ttcatacaat tgatgaccta attggtgtcg
     2701 attctgcttt tcaacgttca attcaacttt tattttacca ctatcaatgg catccgtcat
     2761 ttctttttta gctaaaagtt gtgtcgtttc ctcttcgtct aacttatact tacccttccg
     2821 cttcttaaag aaatcatcac gccagttacc tacataaggt accgtcgtac ttcgacaatg
     2881 gggatgcatc ggcggggcat tgacacctgg caccatgtct ttgactttaa acactttctt
     2941 atcataatga cgacagattt tagatgtctt ttcatcacgt ttcgccacga actcatattc
     3001 ggcatcgtcg cccatcgtct ctaaataatg caatttctgc gcttccgttt gaacgcgtgc
     3061 aacttcggta atcaataacc ttttcgtatt agcgactgtc tgcttctgtt tcttgcgtat
     3121 ctctggcaca aactcatacg gatgacgccc acgtaacatc acatggcttg ccatccgctc
     3181 aacatctttt ctgagtccat cttgattatt ccagagtcgc tcagaccaat tcagcttgcc
     3241 aaagttagaa tacacaatcg cttcaacatc tgactgcttc acatgcacat ccgcacctaa
     3301 aatacctgct tgatgtttca gtgtacgtgt cacgctatct tgtaagtgat gattcaccac
     3361 tttcgcttgt tctgcatagg ctttcgtcac aatcaaaccg agctcatgct ttaacaactg
     3421 ctcacggttc acatacatcg ctgtattgta gcgtttaagt tctttattcg ccttatcact
     3481 aaaatcttta ttttcaacat aggccttagc ttgcatttgg aacgcttcaa catcaaactt
     3541 atccacgatt tgctttgctt ctcgccaatc aatcccttca gccgtcacaa gcttcccata
     3601 ataagctaat aagtttttgt agatgtccgc aatcatcatc gcaatgatac gctcaatttc
     3661 agctacttta gctgcatcct caagcgtctc agattgtatc gcttgttgtg cccgctctaa
     3721 ccagtaatca ttcaagtttg acttttttga tttaaacgat acttttattt caatgattat
     3781 tagttgtatc aattgcaagc gttacataaa tccttttaat
//
LOCUS       DANHOL010000179         3781 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.181, whole genome shotgun sequence.
ACCESSION   DANHOL010000179 DANHOL010000000
VERSION     DANHOL010000179.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 3781)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3781)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3781
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.181"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(82..1314)
                     /locus_tag="PTC08_002173"
     CDS             complement(82..1314)
                     /locus_tag="PTC08_002173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsW/RodA/SpoVE family cell cycle protein"
                     /protein_id="HDK5683642.1"
                     /translation="MNNMKRLFRYILRSSKYIDFPLLITYLALCFIGLTMVYSASMVA
                     ATRGTLTGGIPVAGTYFYTRQLIYVIVGFFIVFFMAYIMDVRILKQRNIQLGMMAIML
                     GLLFATLLFGSEINGSRSWLKLGFMNLQASELLKIAIILYVPYIIERKHYEIQRQPIV
                     ILWPIAFVGFCLGLVLLQKDVGQTLLIGGIFFSIIVYSGIGVKNLIKIGSYAMLALIV
                     VILIIVIFRINILPSYLTARFSALENPFNFESGIGYHLSNSLLAIGNGGLFGRGLGNS
                     IMKLGYLPEPHTDFIFAIISEELGFVGAFIVLGMIFFIVYRAFELASRTASYFYKLVC
                     VGIASYIALQTFVNLGGISGLIPLTGVPLPFISFGGSSMLSLSIAMGLLLIIAKQIKY
                     DDAKQRYMKKQQAKMRRY"
     gene            complement(1385..1660)
                     /locus_tag="PTC08_002174"
     CDS             complement(1385..1660)
                     /locus_tag="PTC08_002174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlaN family protein"
                     /protein_id="HDK5683643.1"
                     /translation="MSKQQQMSNAAYDQLNKDADRILQLIKVQIDNLTLPQCPLYEEV
                     LDTQMYGLQKEVDFAVNLGLVSEEDGKKLMLRLEKELSKLHEAFTRV"
     gene            1797..2279
                     /locus_tag="PTC08_002175"
     CDS             1797..2279
                     /locus_tag="PTC08_002175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683644.1"
                     /translation="MIQIKGDVKFPITLDSTTWIFDDRKISLEDLEKGIFEGQKPIEF
                     EDNREWNRAILEGQTNPPTLNSEIDYKKRAVLQGSFAINMTPFFKNAEPYENVTTIRL
                     SNDEAHIDVPFDLLPYLFFQFAKDGKRLYHDDGVDSFVYTLEDGYDYVFEHVTHIEVF
                     "
     gene            2280..2483
                     /locus_tag="PTC08_002176"
     CDS             2280..2483
                     /locus_tag="PTC08_002176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2197 domain-containing protein"
                     /protein_id="HDK5683645.1"
                     /translation="MRKVTCIICDTEVLLDENTRLAKRLKNNPIKTFMCDECKSRLDT
                     PKQRPPILTTHDKKDATSYHDEA"
     gene            complement(2603..3730)
                     /locus_tag="PTC08_002177"
     CDS             complement(2603..3730)
                     /locus_tag="PTC08_002177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-dependent flavin oxidoreductase"
                     /protein_id="HDK5683646.1"
                     /translation="MNTKYEKLFETLELPNGTTLRNRFVLAPMTHTLSNDDGTASDVE
                     LDYMESRSKDVGLAITAATYVNEEGKAFPGEPSISKEEDLEGLSELARRMKKGGAKAI
                     VQIHHGGAKSLPEWVPNGDVKAPSAVSTVGFGHTEPHDAREITAEEIEQMIKDFGKAT
                     SLAIKAGFDGVEIHGANHYIIEQFQSPYYNRRDDKWKELFSLPNAVADEVLRVAREEG
                     PQDFIVGYRFSPEEAEDPGITMDNTEKLIKHLIEKPLDYLHVSLMNVHSVVRRGEHEG
                     KKRVDLILDWMEDRMPLIAIGSVFSADDALSAIETGVPLIAMGRGLLFDENLISKTKE
                     GREDEIISYFDPEKADHHNMPYLLWKAFADKWYPYPEKPNA"
BASE COUNT         1190 a          739 c          663 g         1189 t
ORIGIN      
        1 aaaaagctaa cttctatata aagtatagaa attagctttt ggtgcatcac aagtatccgt
       61 catacacacg ccatctattt gttaataacg tctcatttta gcttgttgtt ttttcatgta
      121 gcgttgtttc gcatcatcat atttaatttg cttagcaata atgagtagta gtcccatcgc
      181 gatacttaaa cttaacatcg atgaaccccc aaaactaata aatgggagcg gtacacctgt
      241 taatgggatt aagcctgaaa taccacctaa attgacaaaa gtttgtaatg caatataact
      301 cgcaatacca acacatacca atttgtaaaa atatgacgct gtacgggaag ccaattcgaa
      361 agcacgatag acgataaaga aaatcatacc taacacgatg aaagccccca caaaaccaag
      421 ctcttcacta ataatcgcaa aaatgaagtc tgtatgcggt tcaggtaagt atccgagttt
      481 cataatactg ttgcccaatc cacgtccaaa cagtccccca ttaccgatag cgagtaacga
      541 attcgataaa tggtaaccaa taccagactc aaaattaaat gggttttcca atgcgctaaa
      601 acgtgctgtt aaatatgatg gtaaaatatt aatgcggaaa atgacaataa ttaaaattac
      661 gacaattaac gctaacatcg cgtaagagcc gattttaatc aagtttttga caccgatacc
      721 agagtaaacg ataatactaa aaaatatacc gcctatcaac aatgtttgac cgacgtcttt
      781 ttgtagtaag acaaggccaa gacaaaaacc gacaaatgca atcggccaca aaataacgat
      841 cggttgtcgt tgaatttcgt aatgctttct ttctattata tatggtacgt agagtatgat
      901 agcaattttt aaaagttcag aagcttgcaa gttcataaat cctaacttta accagcttcg
      961 tgaaccgtta atctcactac caaataatag tgtcgcaaaa agcaaaccga gcatgatcgc
     1021 catcatccca agttgaatat tacgctgctt taaaatgcgt acgtccataa tatacgccat
     1081 aaaaaacaca ataaaaaaac caacgatgac gtatatgagt tgtctcgtat aaaaatatgt
     1141 acctgcaaca ggaataccac ctgtgagtgt gcctcttgtt gctgcgacca tacttgcact
     1201 ataaaccatg gtcaaaccaa taaagcagag tgcaagatat gtgattaata atggaaaatc
     1261 gatatattta gaagatctca aaatataccg aaatagtctt ttcatattat tcatatgtgt
     1321 caatcatcca attctcgcac ttagacgtcg aaaaaacgtg ctattgtatg ttagatagca
     1381 actattaaac gcgagtaaat gcttcgtgta attttgataa ttctttctct aaacgtaaca
     1441 ttaacttttt gccatcttct tcgctaacaa gtccaagatt tactgcaaag tcgacttctt
     1501 tttgtaaacc atacatctgt gtatctaaaa cttcctcgta taaagggcat tgtggtagtg
     1561 taagattatc tatttgaact ttaatgagtt gtagaatacg atctgcgtct ttattcagtt
     1621 ggtcatatgc agcattgctc atttgttgtt gcttgctcat gacatagtcc ccctattaat
     1681 tttcttctta tgtaaaaagt ttatctcatc gactgttaaa aagcaagtaa atttggcata
     1741 cgctctggga caagtatgtt aaaataaacg tagctaaact gagggagtgc atacaaatga
     1801 ttcaaatcaa aggtgacgtt aaatttccaa ttacactcga tagtacgact tggatttttg
     1861 acgatcgaaa aatttcactt gaggatttag aaaaaggtat ttttgaagga caaaagccga
     1921 ttgaatttga ggacaacaga gaatggaatc gtgccatatt agaaggtcaa acgaatccac
     1981 ctactttaaa ttctgaaatt gattataaaa aacgtgctgt attacaaggt tcttttgcga
     2041 ttaatatgac accttttttc aaaaatgcag aaccatatga aaacgtgaca acgatcaggt
     2101 tgtctaacga tgaagcgcat atcgatgtgc cattcgacct gttgccttat cttttcttcc
     2161 aattcgctaa agatggcaaa cgtctctatc acgatgatgg tgtagacagt tttgtttata
     2221 cgttagaaga cggttatgac tatgttttcg agcacgttac acatatagag gtgttctaaa
     2281 tgcgtaaagt cacttgcatc atatgtgaca ctgaagtttt gttagatgaa aatacacgat
     2341 tagcgaaacg tttgaaaaat aatcccatta aaacgtttat gtgcgatgaa tgtaagagcc
     2401 gtcttgatac accgaagcaa cgtccaccta tcttgactac ccatgataaa aaggacgcga
     2461 cttcttatca tgatgaagct taatatgaac cggggcatgg acttaagatg ccccggtttt
     2521 tgtcaagcat aagaaaaagg cgaatggctt gaccgtttaa gacgtggaag cgattcgccc
     2581 tttttatatc gtttaactca gattatgcat ttggtttttc tggatatgga taccatttat
     2641 cagcaaatgc tttccataat aaatatggca tgttgtgatg atctgctttt tctgggtcga
     2701 agtaagaaat gatttcgtct tctctacctt cttttgtttt actaataaga ttttcatcaa
     2761 ataataaacc acggcccatc gcaattaaag gtacgcctgt ttcgatggca cttaatgcgt
     2821 catctgctga gaatactgaa ccgattgcga tgagtggcat acggtcttcc atccaatcaa
     2881 gaattaaatc tacacgtttt ttaccttcgt gttcaccacg acgtacaacg gaatgcacat
     2941 tcattaatga cacgtgtaaa taatcaagtg gtttttcgat taagtgtttg attaattttt
     3001 cagtgttatc cattgtaata cctggatctt ctgcttcttc aggtgagaaa cggtaaccga
     3061 caataaagtc ttgtggtcct tcttctctgg ctacacgtaa cacttcatct gccaccgcat
     3121 ttggtaaaga gaataattct ttccatttgt catcgcggcg gttgtagtat ggtgattgaa
     3181 attgttcgat aatgtagtgg tttgccccgt gaatttcgac accatcaaat ccagctttaa
     3241 ttgcaagtga tgtcgcttta ccgaaatctt taatcatttg ttcaatttct tcagctgtaa
     3301 tttcacgcgc atcatgtggt tctgtatgac cgaaacctac agttgaaaca gcacttggcg
     3361 ctttaacgtc accattaggt acccattcag gtaagctttt cgcaccaccg tgatggattt
     3421 gaacgattgc ttttgcgcca ccttttttca ttcttcttgc aagttcactt aaaccttcaa
     3481 gatcttcctc tttagaaata gatggttcac ctggaaatgc tttcccctct tcattcacat
     3541 atgttgctgc tgtaatcgct aaaccgacat cttttgagcg agattccata tagtctaatt
     3601 ccacatctga ggcagtccca tcgtcattag ataatgtatg tgtcataggt gctaaaacga
     3661 aacggtttct taatgttgtt ccgttgggta attcaagtgt ttcaaataat ttttcatact
     3721 ttgtgttcac tgtatttccc tcctattcat taactgcctt cattttaata catcgcctga
     3781 g
//
LOCUS       DANHOL010000180         3751 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.182, whole genome shotgun sequence.
ACCESSION   DANHOL010000180 DANHOL010000000
VERSION     DANHOL010000180.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 3751)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3751)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3751
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.182"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(30..1244)
                     /locus_tag="PTC08_002178"
     CDS             complement(30..1244)
                     /locus_tag="PTC08_002178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDK5683647.1"
                     /translation="MKTARQLFRERLNAERKEKNYYNKFIFNGHFSVFLVILLGAFIL
                     GYSQWLKNLPEGINYALWVSMVLSITSIFPLKTLLEDADRLFLLPFERQMKAYMRDSI
                     IFSYLSRLPLQILMLIVFYPLIHTVYPERMAAFIVTSVLAIILPLVGLCLKWEWYRYR
                     LENWSIQLVLFIFNLGGYYVMLETSHLSAIIAVVGIIALCVLLNRLNVNQLFPWESMI
                     KHAHQHRINYYKFVNMFTDVKGMQEQAVRRRYLDFLLKTPKPFDSTQLYPFLFKRNFL
                     RGKDALNMTLRLVVICAFIMIWLNHPWVNAVIGSLAMYIIVLQMSQFYTQEAYSLWPQ
                     VWPVSELYVIEGYRKFLQQTVLIIGILFSIVYVLLHVAQFYFIIFFFIVGYFTIRSTI
                     KKLKYQESLLKD"
     gene            complement(1241..1978)
                     /locus_tag="PTC08_002179"
     CDS             complement(1241..1978)
                     /locus_tag="PTC08_002179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDK5683648.1"
                     /translation="MTVQIKNLTGGYGKKPIIKNINFELTDGEIVGLIGLNGAGKSTT
                     IKHILGLLTPTEGDMSISGINIKEDIHAYRQHLSYIPEAPVIYDALTLKEHIEMTAMA
                     YSIDYDTAMARALPLLKTFRLEDQLHIFPSHFSKGMKQKVMIICAFIVEPDFYIIDEP
                     FLGLDPIGIQSMLDLMASKKEEGRTVLMSTHILATAERYCDRFIILDQGEIVAMGNLE
                     ALRHQTAMPHATLDEIYIHVTKGAQSS"
     gene            2114..2539
                     /locus_tag="PTC08_002180"
     CDS             2114..2539
                     /locus_tag="PTC08_002180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIT family protein"
                     /protein_id="HDK5683649.1"
                     /translation="MTETIFSKIIDGDIPSFKVYENDYVYAFLDISQVSKGHTLLIPK
                     TPSPNIYETDAETMKHIGEALPIVANAIKKTFNPDGLNIIQNNGEYASQSVFHIHFHL
                     IPRYKNDIDGFGYHWETNESRIDDAQKAEIAAQIASNIE"
     gene            2617..2973
                     /locus_tag="PTC08_002181"
     CDS             2617..2973
                     /locus_tag="PTC08_002181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YtxH domain-containing protein"
                     /protein_id="HDK5683650.1"
                     /translation="MKIVRMTLGVVAGVATGLGVALVARDGQTRIANPKAARPKTELE
                     LEVDTMKNSIHDIKRYIAQIKNESQSFAGSIGDEVKTMIGEFKADINPNIKQLQSHIE
                     NLQNRGEEMTNFPTKK"
     gene            3075..3605
                     /locus_tag="PTC08_002182"
     CDS             3075..3605
                     /locus_tag="PTC08_002182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator Hpr"
                     /protein_id="HDK5683651.1"
                     /translation="MNDRQAQIEGMLYTHKIAMLSKVLWKNAESDWQRWLKKSGIAMN
                     EHLILLTLYAFGRATISDISKYGVMHVSTAYNFAKRLEQQALLNMEKDHNDKRNTYIT
                     LTDKGKALVDEIFEQYDETQNKIYNASKDFQTEMFHLPSFSDVHYLVAKLHGKDFIND
                     VNLCQSHIRENLLDEQ"
BASE COUNT         1283 a          673 c          657 g         1138 t
ORIGIN      
        1 acaggctgga agtcgcccca gcctgtttct taatctttca ataaactttc ttgatatttc
       61 aatttcttga ttgtactgcg gatagtgaaa taaccgacga taaaaaagaa gatgatgaaa
      121 taaaactgtg ccacatggag taacacataa acgatactga ataagattcc tatgatcagt
      181 acggtttgtt gtaaaaactt tcgatagcct tctatcacat acaattctga cactggccaa
      241 acttgcggcc ataaactata cgcctcttga gtataaaatt gggacatttg taacacgata
      301 atatacatcg ccaaacttcc aatgaccgca ttcacccatg gatgatttaa ccaaatcatg
      361 atgaatgcac aaatcaccac taaacgcaat gtcatgttta atgcgtcttt accacgtaaa
      421 aagttacgct taaataaaaa tggatagagt tgtgtcgagt caaatggttt tggtgttttt
      481 aacaagaaat caagataacg acgacggact gcttgttctt gcattccttt aacatcagta
      541 aacatgttca caaatttgta atagttaatg cgatgttgat gcgcgtgttt aatcatggac
      601 tcccatggaa acagctgatt cacattcaat ctgttcagca atacacataa agcgatgata
      661 cccacgacag caatgatagc tgataagtga gaagtttcca acatgacata gtagccacca
      721 agattgaaaa tgaaaagcac gagttgaata gaccaatttt caagtctgta gcggtaccat
      781 tcccacttta agcataaacc tactaacggt aaaatgatgg ctaacacact cgtcacaatg
      841 aatgcggcca tacgttcagg ataaactgtg tgtatgagtg gataaaacac gatcagcatt
      901 aaaatttgta gtggcaatct tgataaatag ctaaatataa tactatcacg catatacgct
      961 ttcatttgac gttcgaatgg tagtaaaaat aaacggtcag catcttccaa caaagttttt
     1021 aatgggaaga tggatgtaat agacaaaacc atggataccc acagcgcgta attgatgcct
     1081 tcaggtaaat tttttaacca ttgactataa cccaatataa atgcacctaa taatatgacg
     1141 agaaacactg aaaaatggcc gttgaaaata aatttgttgt agtaattttt ttcctttcgc
     1201 tcagcattta aacgctctcg aaaaagttgt ctcgccgttt tcatgaggat tgtgctcctt
     1261 tagtcacatg aatgtaaatt tcatccaacg tcgcatgtgg cattgctgtt tggtgacgta
     1321 acgcttccaa attccccatc gcgacgattt caccttgatc taatataata aaacgatcac
     1381 aatagcgctc agcagtcgct aaaatatgtg tactcatcaa cactgttcgg ccttcttctt
     1441 ttttagacgc catcaaatca agcatcgact gtatgccaat cggatcaaga cctaaaaatg
     1501 gctcgtctat aatgtaaaaa tccggttcta caataaacgc gcaaataatc attacttttt
     1561 gcttcatccc ttttgaaaag tgactcggaa aaatatgtaa ttggtcttct aaacgaaatg
     1621 tcttcaataa aggtaatgcg cgcgccatcg ctgtatcata gtcaatacta tacgccatcg
     1681 ctgtcatttc aatgtgttct tttaacgtca gtgcatcata aatgacaggt gcttctggaa
     1741 tataggataa atgttgtcga taggcatgta tatcctcttt aatattaatg cctgaaatcg
     1801 acatgtcacc ttcagtcggc gtcaacaatc ctaaaatatg tttaattgtt gtacttttac
     1861 ccgcaccatt taagccgatt aaaccaacaa tttctccatc tgtgagttca aaatttatat
     1921 ttttaatgat aggcttttta ccatagccgc ctgttaaatt tttaatttgt acagtcattg
     1981 atctgcacct ccataattgt tattgtatca aaaatacggt tgctattgct atttaataga
     2041 catttgataa tatcgttaca tgaacagtca cacgtgctat aataaaacta aatgaagaaa
     2101 tgagggaatc tatatgactg aaacgatatt ctcaaagatt attgacggcg acattccaag
     2161 ttttaaagtt tacgaaaatg attatgtcta tgcattttta gatatttctc aagtttctaa
     2221 aggccataca ttactcattc ctaaaacgcc gtcaccaaac atttatgaaa cagatgctga
     2281 aacgatgaaa catatcggag aagcattgcc gattgtggcg aatgcaatta agaagacatt
     2341 taacccagac ggcttgaaca tcattcaaaa caatggtgaa tatgcatcac aatctgtttt
     2401 ccatattcat tttcatttaa ttccgcgtta taaaaatgac attgatggtt tcggttatca
     2461 ttgggaaaca aatgaatctc gaattgatga tgctcaaaag gcagagattg ctgctcaaat
     2521 tgcttcaaac atcgaataag attaaattat actgaaaccg catattttat aaacaaatgg
     2581 gtatatataa aagaaaattg tccgaggagg aaaattatga aaatcgttcg aatgacatta
     2641 ggcgttgttg ctggtgtggc aacaggttta ggtgtggctt tagttgcgag agatggtcaa
     2701 acacgtatcg ccaatccaaa agcggcacga cctaagacag aacttgaact tgaagtcgat
     2761 acgatgaaaa atagtatcca tgatattaaa cgttatatcg ctcaaattaa aaatgaaagc
     2821 caaagttttg ctggctcaat tggtgatgaa gtgaaaacaa tgattggtga gtttaaagct
     2881 gacatcaatc caaatattaa acaacttcaa tcacatattg aaaatctaca aaatcgtggc
     2941 gaagaaatga caaattttcc aaccaaaaaa taatttttta gtgtttgaag gaccattatt
     3001 cgatataatg acgttaaagc atggtacaat acggtatcat gcttttttat agtctaagaa
     3061 aggagtctag cattatgaat gacagacaag cacaaattga gggaatgctt tacacacata
     3121 aaattgccat gttatctaaa gttctatgga aaaatgccga aagtgattgg cagcgttggt
     3181 taaaaaaatc gggtatcgcc atgaatgaac atctgatttt attaacactt tacgcttttg
     3241 gtcgcgcaac tatttcagat atttctaaat acggtgtgat gcacgtttca actgcataca
     3301 attttgccaa acgcctagaa caacaagcat tgcttaacat ggaaaaagat cacaatgata
     3361 agaggaacac gtacattact ttaacggata aaggtaaagc tttagtagat gaaattttcg
     3421 aacaatatga tgaaacacaa aataaaatct acaatgcttc aaaagatttc caaactgaaa
     3481 tgttccacct tccgagcttt agtgatgtcc attatctcgt tgctaaattg cacggtaaag
     3541 actttattaa tgacgtgaat ttatgtcaaa gtcatattcg agaaaatttg cttgacgaac
     3601 agtaatttga ggtagataat acgttatatt actgatagca aaggagcttg taaatgttaa
     3661 actgtttgcg ttcaattgat gtacattcaa gatttggttt acctcgtatt gcttttataa
     3721 gttttgtaac ggttgttatc acattttttg t
//
LOCUS       DANHOL010000181         3744 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.183, whole genome shotgun sequence.
ACCESSION   DANHOL010000181 DANHOL010000000
VERSION     DANHOL010000181.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 3744)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3744)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3744
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.183"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            <1..1685
                     /locus_tag="PTC08_002183"
     rRNA            <1..1685
                     /locus_tag="PTC08_002183"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
     gene            1763..1877
                     /gene="rrf"
                     /locus_tag="PTC08_002184"
     rRNA            1763..1877
                     /gene="rrf"
                     /locus_tag="PTC08_002184"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
     gene            1887..1961
                     /locus_tag="PTC08_002185"
     tRNA            1887..1961
                     /locus_tag="PTC08_002185"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1919..1921,aa:Asn,seq:gtt)
     gene            1963..2034
                     /locus_tag="PTC08_002186"
     tRNA            1963..2034
                     /locus_tag="PTC08_002186"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1996..1998,aa:Glu,seq:ttc)
     gene            2044..2119
                     /locus_tag="PTC08_002187"
     tRNA            2044..2119
                     /locus_tag="PTC08_002187"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2077..2079,aa:Val,seq:tac)
     gene            2140..2223
                     /locus_tag="PTC08_002188"
     tRNA            2140..2223
                     /locus_tag="PTC08_002188"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2174..2176,aa:Tyr,seq:gta)
     gene            2228..2302
                     /locus_tag="PTC08_002189"
     tRNA            2228..2302
                     /locus_tag="PTC08_002189"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2260..2262,aa:Gln,seq:ttg)
     gene            2306..2378
                     /locus_tag="PTC08_002190"
     tRNA            2306..2378
                     /locus_tag="PTC08_002190"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2339..2341,aa:Lys,seq:ttt)
     gene            2755..3660
                     /gene="rocF"
                     /locus_tag="PTC08_002191"
     CDS             2755..3660
                     /gene="rocF"
                     /locus_tag="PTC08_002191"
                     /EC_number="3.5.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginase"
                     /protein_id="HDK5683652.1"
                     /translation="MNKIIELIGAPTTFGQKKLGVNLGPDAIRYAGVLPRLKRIGHEV
                     IDTGNVDVPPVDIEKFMSQQEGLQNYEEILAFSKSLKEKVSDSIRQQHFPVILGGDHS
                     LAIGSISGVAEHYDHLGVIWYDAHGDLNVPEESPSGNMHGMPLRILAGEGDEKLVQLG
                     GFAPKVKPENIVLIGMRDLDFGEREYIKKHQIRTYTMADIDERGIRSVIEESIAYLKD
                     KTDGVHLSLDVDALDPNETPGTGTKVSGGLTYRESHYALELLNQSGMITSMDIVEVNP
                     LLDVENHTAEQAVALLGSFFGETLL"
BASE COUNT         1022 a          763 c          982 g          977 t
ORIGIN      
        1 ttctaagggc gttgaagcat gatcgcaagg acatgtggag cgcttagaag tgagaatgcc
       61 ggtgtgagta gcgaaagacg ggtgagaatc ccgtccaccg attgactaag gtttccagag
      121 gaaggctcgt ccgctctggg ttagtcgggt cctaagctga ggccgacagg cgtaggcgat
      181 ggataacagg ttgatattcc tgtaccacca ttattcgttt taagcgatgg ggggacgcag
      241 taggataggc gaagcgtgct gttggagtgc acgtccaagc agtgagattg agtgttaggc
      301 aaatccggca ctcttaagat tgagctgtga tggggagagg aacttgttcc tcgagtcgtt
      361 gatttcacac tgccgagaaa agcctctagc tagaataacg gtgcccgtac cgcaaaccga
      421 cacaggtagt caagatgaga attctaaggt gagcgagcga actctcgtta aggaactcgg
      481 caaaatgacc ccgtaacttc gggagaaggg gtgctctttg aggttcacgc ttcgaagagc
      541 cgcagtgaat aggcccaagc gactgtttat caaaaacaca ggtctctgct aaaccgtaag
      601 gtgacgtata ggggctgacg cctgcccggt gctggaaggt taagaggagt ggttagcgca
      661 agcgaagcta cgaatcgaag ccccagtaaa cggcggccgt aactataacg gtcctaaggt
      721 agcgaaattc cttgtcgggt aagttccgac ccgcacgaaa ggcgtaacga tttgggcact
      781 gtctcaacga gagactcggt gaaatcatag taccggtgaa gatgccggtt acccgcgaca
      841 ggacggaaag accccgtgga gctttactgt agcctgatat tgaaattcgg tacagtttgt
      901 acaggatagg taggagcctt agaagcgtga gcgctagctt acgtggaggc attggtggga
      961 tactacccta attgtattgg atttctaacc cgcagcactt atcgtgctgg gagacagtgt
     1021 caggcgggca gtttgactgg ggcggtcgcc tcctaaagag taacggaggc gctcaaaggt
     1081 tccctcagaa tggttggaaa tcattcatag agtgtaaagg cataagggag cttgactgcg
     1141 agacctacaa gtcgagcagg gtcgaaagac ggacttagtg atccggtggt tccgcatgga
     1201 agggccatcg ctcaacggat aaaagctacc ccggggataa caggcttatc tcccccaaga
     1261 gttcacatcg acggggaggt ttggcacctc gatgtcggct catcgcatcc tggggctgta
     1321 gtcggtccca agggttgggc tgttcgccca ttaaagcggt acgcgagctg ggttcagaac
     1381 gtcgtgagac agttcggtcc ctatccgtcg tgggcgtagg aaatttgaga ggagctgtcc
     1441 ttagtacgag aggaccggga tggacatacc tctggtgtac cagttgtcgt gccaacggca
     1501 tagctgggta gctatgtatg gacgggataa gtgctgaaag catctaagca tgaagccccc
     1561 ctcgagatga gatttcccaa cttcggttat aagatccctc aaagatgatg aggtgaatag
     1621 gttcgaggtg gaagcgtagc gatacgtgga gctgacgaat actaatcgat cgaagactta
     1681 atcaatataa ttgttcataa ggtaatgctt gtgaaactat acttactatc tagttttgaa
     1741 tgtatgacat tcagcaactt aatctggtgc caatggcaaa gaggtcacac ctgttcccat
     1801 gccgaacaca gaagttaagc tctttagcgc cgatggtagt cggacttacg ttccgcgaga
     1861 gtaggacggt gccaggttaa gattgatcca cagtagctca gtggtagagc tatcggctgt
     1921 taaccgatcg gtcgtaggtt cgagtcctac ctgtggagcc atggcccctt ggtcaagcgg
     1981 ttaagacacc gccctttcac ggcggtaaca cgggttcgag tcccgtaggg gtcattgata
     2041 tatggagaat tagctcagct gggagagcat ctgccttaca agcagagggt cggcggttcg
     2101 aacccgtcat tctccaccat ttttaattgc gtacatatcg gaggggtagc gaagtggcta
     2161 aacgcggcgg actgtaaatc cgctccttcg ggttcggcag ttcgaatctg cccccctcca
     2221 ccatcgatgg gctatagcca agcggtaagg caacggactt tgactccgtc actcgctggt
     2281 tcgaatccag ctagcccagc cataagagcc attagctcag ttggtagagc atctgacttt
     2341 taatcagagg gtcagaggtt cgaatcctct atggctcact ttcaaacctt attccaaatg
     2401 ggatagggtt tttattttgg ttctaatcct tttctcctcc tgctattagc aacgctacat
     2461 ccagtacgtg catctcgaac accgctcagc tcggtgctct ttttctaaca aaatttaaaa
     2521 tgaataaaat ctacagtttc attcacatcc aatcgtcgta cacatagttc atagttataa
     2581 aaattcatta aagcacatat agttaaatcc tatacgactt ctacataatt acagcacttg
     2641 aattcaacgg tctaaacaac tattctgaaa ttgtatgcat attcaattga tttaaagggg
     2701 caattgagat gcagacattg ttaaatgaat cattaaaaaa aggggagaca acaaatgaat
     2761 aaaattattg aactcatcgg tgcacccact acatttggac agaaaaagct aggtgttaat
     2821 ttggggccag atgctattcg atatgctggg gtgttacctc gtttaaaacg tatcggtcat
     2881 gaggtcattg acacagggaa cgttgacgtt cctcctgtgg atattgagaa attcatgtct
     2941 caacaagagg gtttacaaaa ttatgaagag attctcgctt tctcaaaatc attaaaggaa
     3001 aaagtgtcgg acagtattcg tcaacaacat ttccccgtta ttttaggggg tgaccattcg
     3061 ttagctattg gttcgatctc gggtgttgca gagcattatg atcacttagg tgtcatttgg
     3121 tatgacgcac atggtgatct gaatgtacca gaagaatcgc catccggtaa tatgcacggg
     3181 atgccattac gtattttggc gggtgaaggg gatgaaaagc tcgttcaact tggtggcttt
     3241 gcacctaaag tgaaaccaga aaatattgtg ctaatcggta tgcgtgattt agattttggt
     3301 gaacgtgaat atattaagaa acatcaaatt cgtacatata cgatggctga tattgatgag
     3361 cggggtattc gttcagtcat tgaagaaagt attgcatatt taaaagataa gactgatggt
     3421 gtgcatttat cattagatgt cgatgcttta gatcctaatg aaacgccggg gacaggtacg
     3481 aaagtttcag gtggcttaac ctatcgtgag agtcattatg cattagaatt actcaatcaa
     3541 tccggcatga ttacatcaat ggatattgtt gaagtgaatc cacttttaga tgtagaaaat
     3601 catactgcag aacaagccgt tgctctgtta ggttcatttt ttggcgaaac attgttataa
     3661 agtatcattt aaaatatgaa tgttaaatat tgaaacgagg taaggcgcaa gtatgtcatc
     3721 tttatctcgt ttttgatttg ttgt
//
LOCUS       DANHOL010000182         3581 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.184, whole genome shotgun sequence.
ACCESSION   DANHOL010000182 DANHOL010000000
VERSION     DANHOL010000182.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 3581)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3581)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3581
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.184"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            84..1202
                     /locus_tag="PTC08_002192"
     CDS             84..1202
                     /locus_tag="PTC08_002192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002502341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate synthase"
                     /protein_id="HDK5683653.1"
                     /translation="MAELMRGLEGVIAAETKISSIIDSQLTYAGYDIDDLTENAQFEE
                     IVFLLWNYRLPTKKELSELKEKLFEYMTLNPRMYSHFEEYTTDKVHPMTALRTSVSYL
                     AHFDENADDNDEEALQERAIRIQAKIASLVASFARVREGKEPVKPDPALSYAANFLYM
                     LRGEKPTDVEVEGFNKALILHADHELNASAFTARCAVSSLSDMYSGVTAAVSSLKGPL
                     HGGANERVMQMLTEIGSVDNVEGYLQKAFANKDKVMGFGHRVYKNGDPRAKYLKEMSQ
                     KITNETGQSELFDVSVKIAEIMKEEKGLLPNVDFYSATVYHSMGIDHDLFTPIFAVSR
                     TSGWTAHILEQLRDNRIMRPRATYIGDVNRKYVPIEER"
     gene            1248..2510
                     /gene="icd"
                     /locus_tag="PTC08_002193"
     CDS             1248..2510
                     /gene="icd"
                     /locus_tag="PTC08_002193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent isocitrate dehydrogenase"
                     /protein_id="HDK5683654.1"
                     /translation="MSEKIVKTDSGLQVPNQPIVPFIIGDGIGPDIWKAASRVIDAAV
                     EKAYAGEKKIDWKEVLAGQKAYDQTGEWLPAETLDTIKEYLIAIKGPLTTPIGGGIRS
                     LNVALRQELDLFNCLRPVRWFKGVPSPVKHPEQTDMVIFRENTEDIYAGIEFKEGSEE
                     VKKVIDFLQNEMGAKNIRFPETSGIGIKPVSKEGTERLVRAAIQYAIDNNRKSVTLVH
                     KGNIMKFTEGAFKQWGYDLAENEFGDQVFTWQQYDRLVEEKGKDEANKIQDQAEKDGK
                     IIIKDSIADIFLQQILTRPADHDVVATMNLNGDYISDALAAQVGGIGIAPGANINSET
                     GHAIFEATHGTAPKYADLDKVNPSSVLLSGVMLLEHIGWQEAADLITNSVEKTIASKV
                     VTYDFARLMEGATEVKTSEFADELIKNL"
     gene            2829..3533
                     /locus_tag="PTC08_002194"
     CDS             2829..3533
                     /locus_tag="PTC08_002194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HDK5683655.1"
                     /translation="MAQRVLVVDDEQSIVTLLKYNLEQSGYVVEVAQDGEEALQKEKE
                     TKPDLIVLDVMLPKKDGIEVCKTIRSDKNQVPILMLTAKDDEFDRVLGLELGADDYMT
                     KPFSPREVVARVKAILRRSSLVNHVQKEEEDEDIVIGSIRIRPDFFEVYRNDELLELT
                     PKEFELLLYLVERQGRVITREHMLNSVWNYEFAGDSRIVDVHISHLRDKLEENPKQPQ
                     FIKTVRGLGYKLERPK"
BASE COUNT         1240 a          564 c          760 g         1017 t
ORIGIN      
        1 agttcacaaa acgtatcata ttggctataa tagttattga aagccattac aaagaacgaa
       61 tataaagtaa aggggaaatt catatggcag aattaatgag aggtctagaa ggggtaatcg
      121 cagctgaaac aaaaatcagt tcaattatcg atagccaact tacatatgcg ggctacgata
      181 tagatgattt aactgaaaat gcacaatttg aagagattgt tttcttattg tggaattatc
      241 gattacccac gaaaaaagaa ttgtcagaat taaaagaaaa attatttgag tatatgactt
      301 taaatccaag aatgtatagt cattttgaag aatatacgac tgataaagta catcctatga
      361 cggctttacg tacatcggtt tcttatttag cacactttga tgaaaatgcc gatgataacg
      421 atgaagaagc attacaagag cgtgcgattc gtatccaagc caaaatcgca tcactcgtcg
      481 cttcatttgc aagagtaaga gaaggtaaag aaccggttaa gcctgatcct gctttaagtt
      541 atgcagcaaa tttcttatat atgcttagag gcgaaaaacc gactgatgtt gaggtagaag
      601 gctttaataa agcattgatt ttacatgcgg atcacgaatt gaatgcgtct gcttttacag
      661 cgcgttgtgc ggtgtcatca ttatcagata tgtattcagg tgtcactgct gccgtatcat
      721 cattaaaagg accgttacat ggtggtgcaa acgaacgcgt catgcaaatg ttgactgaaa
      781 tcggatcagt ggacaacgtt gaaggctact tacaaaaagc atttgcaaat aaagataaag
      841 taatgggctt cggtcaccgc gtgtataaaa atggtgatcc acgtgcgaaa tacttgaaag
      901 aaatgagcca aaaaatcact aatgaaactg gacaaagtga attgttcgat gtttctgtta
      961 aaattgcaga aatcatgaaa gaagaaaaag gattattacc taacgttgac ttctacagtg
     1021 cgacagtata tcacagtatg ggcattgatc atgatctctt tacaccaatt tttgcggtaa
     1081 gtcgtacatc tggttggact gcgcacatct tagaacaatt aagagataat agaattatgc
     1141 gtcctcgtgc aacatatatc ggtgatgtta accgtaaata tgtaccgatt gaagaacgct
     1201 aatgaagtct atatattata aagtttcaaa attcggaggt attaaacatg agtgaaaaga
     1261 ttgtaaaaac ggacagcgga ctacaagttc caaatcaacc tatcgtacca tttatcatcg
     1321 gcgacggtat tgggcccgat atttggaaag cagcaagtcg tgtcatcgat gctgccgtag
     1381 aaaaagctta tgccggtgag aaaaaaattg actggaaaga agtattagcc ggtcaaaaag
     1441 catacgacca aacgggtgaa tggttaccag cagaaacgtt agacacaatt aaagaatatt
     1501 taattgcgat taaaggacca ttaacaacgc caatcggtgg cggtatccgt tcattaaacg
     1561 tagcgctacg tcaagaatta gacttattta actgtttacg tccagtgcgt tggtttaaag
     1621 gtgtaccttc accagtgaaa catccagaac aaacggacat ggtcatcttc cgtgaaaata
     1681 ctgaagacat ttacgcaggt atcgaattta aagaaggtag cgaagaagtt aaaaaagtga
     1741 ttgatttctt acaaaatgaa atgggcgcta aaaatattcg cttccctgaa acttctggaa
     1801 tcggtattaa gccagtatct aaagaaggga cagagcgttt agtacgtgca gccattcaat
     1861 atgcaattga taataaccgt aaatcagtaa cacttgtgca taaagggaac attatgaagt
     1921 ttactgaagg tgcgttcaaa caatggggtt atgatttagc ggaaaatgag ttcggcgatc
     1981 aagtatttac atggcaacaa tatgatcgtt tagttgaaga aaaaggaaaa gacgaagcga
     2041 acaaaattca agatcaagct gagaaagatg gcaaaatcat tattaaagat tctattgcag
     2101 acatcttctt acaacaaatt ttaacacgtc cagctgatca cgatgttgtt gcgacaatga
     2161 accttaacgg tgactatatt tcagatgcat tagctgcgca agtcggtggc attggtattg
     2221 caccaggtgc gaacattaac tctgaaacag gtcatgcaat tttcgaagcg acgcacggga
     2281 cagccccgaa atatgctgat ttagacaaag tgaatccttc atcggtatta ctttcaggtg
     2341 tgatgttgtt agaacacata ggctggcaag aagctgcgga tttaattact aattctgtag
     2401 aaaaaacgat tgcttcaaaa gttgtgacat atgactttgc gcgtttaatg gaaggtgcaa
     2461 ctgaagtaaa aacgtcagaa tttgcagatg aattgattaa aaatttataa taagttgatt
     2521 aaaaggccgg gaatttcctg gccctttatt tatgttaaaa gcacgaatga aattcaaaca
     2581 ttggataaag tctatagtca aaaacacttc cttatccatg cgctgttttg agataatttt
     2641 ctcagaaggc tgacacttct gagggataaa gttgaaatca aaatggtgtc ttttaagttt
     2701 tgtagagggg atgagaatct ttgatttttt acgcgaaagt taagttattg taaagatgct
     2761 aaaagatata ttatttttaa gactatttta aggtataatg aagttaatca taataaggag
     2821 gtacatatat ggctcaaaga gtgcttgtcg ttgatgacga acaatccatt gtcactttgc
     2881 taaaatacaa cctcgaacaa tcaggttatg tcgttgaagt ggctcaagat ggagaggaag
     2941 cgttacaaaa agaaaaagaa acgaaacccg acttgattgt attggatgtg atgttaccga
     3001 aaaaggatgg cattgaagta tgtaaaacga ttcgctcaga taaaaaccaa gtacctattt
     3061 taatgttaac tgcaaaagat gatgaatttg atcgtgtgct tggtctagag cttggcgctg
     3121 acgattatat gactaagcct ttttcaccga gagaagtagt cgcacgtgtg aaagccattc
     3181 ttcgtcgttc atcattagtg aatcatgtac aaaaagaaga agaggatgaa gatattgtta
     3241 ttggtagtat tagaattcgt cctgactttt ttgaagtata ccgcaatgat gagttgctag
     3301 agttaacgcc gaaagaattt gagttgctac tttacttagt tgaacgtcaa ggtcgtgtca
     3361 taacgcgtga acatatgtta aattctgtgt ggaactatga atttgcaggt gattctcgaa
     3421 ttgtggatgt acatattagt catttgcgag ataagttaga agaaaatccg aagcaacctc
     3481 agtttattaa aacagttcgc ggtttaggat ataaattgga gcgtcctaaa taaatgatta
     3541 aattttacca taaactttta atcatactta caacaatcac t
//
LOCUS       DANHOL010000183         3515 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.185, whole genome shotgun sequence.
ACCESSION   DANHOL010000183 DANHOL010000000
VERSION     DANHOL010000183.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 3515)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3515)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3515
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.185"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(<1..259)
                     /locus_tag="PTC08_002195"
     CDS             complement(<1..259)
                     /locus_tag="PTC08_002195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683656.1"
                     /translation="MQNYNATIKGENGKKAQKQLKTYNSEVEKHMKNQVSNDKFRSKC
                     STAISVSGLLHTGATTAAMTALGVSGPVGWGVGFGMAALYTA"
     gene            complement(311..544)
                     /locus_tag="PTC08_002196"
                     /pseudo
     CDS             complement(311..544)
                     /locus_tag="PTC08_002196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613524.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(642..1289)
                     /locus_tag="PTC08_002197"
     CDS             complement(642..1289)
                     /locus_tag="PTC08_002197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683657.1"
                     /translation="MLYYASTDNLWYGDDTNDIAVGVEACYFSDKERSRKSFDNACKI
                     AVFICKEYGINPRNQMPGHYQIQADKIVPKSVLEACGYSKDMSVVDKYVLKYLDGVAK
                     ESKPKESKPAPKPTSKATQKIPVKKQPKTAKRIKPWSEKAHYSGKIKYNASLRERSGD
                     SFNNYSFGHEKGILGKGETVYIFEEIQDEQGNIWCRMYTPVNKSWVHKHTIAVSK"
     gene            complement(1293..2057)
                     /locus_tag="PTC08_002198"
     CDS             complement(1293..2057)
                     /locus_tag="PTC08_002198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HDK5683658.1"
                     /translation="MPIGYETKASEALRWAKRQRGIMHDGDGIWPGQCADWIIIFGKK
                     YFDWHFEGHAKDIISQKNRRKAPKGRKFIRNKETFVVQPLDICVWVKGKCGHVALGVE
                     GNLDLFKSLDQNWTTHGNGSPVEEVIHNYDDLEFWGVIRLPFIDDLDIEKDSYVKTTK
                     GNGKMVKKYIGDWNGVPTYTEFLKIGTRRTGQRLDSGHPKFLVFHDTGNRNSTAQQNV
                     NYYNNTYNQPWATTVSAHVFVDDKECINCVPLDEKA"
     gene            complement(2105..2296)
                     /locus_tag="PTC08_002199"
     CDS             complement(2105..2296)
                     /locus_tag="PTC08_002199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683659.1"
                     /translation="METEKYPLNDLLVIGTKKSGKVQDDMNLLITKEVFYGETDIVAI
                     YAGKRLVRNQPYINHFESV"
     gene            complement(2336..2734)
                     /locus_tag="PTC08_002200"
     CDS             complement(2336..2734)
                     /locus_tag="PTC08_002200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683660.1"
                     /translation="MAKVILGNRKITVHPSRFDIVINRSLGRVLGNHTYSSLTINDVS
                     YDIESMVVSDTSITVLLSNDQYNLSGVVTAKVVFFRDDSKTEWRVVVDVLPSLVRSAT
                     AEYDSNLLPTQSYVKRRGLNGTIVNRREVE"
     gene            complement(2746..3276)
                     /locus_tag="PTC08_002201"
     CDS             complement(2746..3276)
                     /locus_tag="PTC08_002201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683661.1"
                     /translation="MLEALRGRDGRSLEVIGADLDKEGNIIIKFSDNSYVTIPRGQRG
                     EGGEASAKGEAGQSITILSQRVEDGNILVKFSDETTLTIPKGQDGRDGVNGTNGLSAY
                     ELAKNSGFTGTIEEWLKLLKGEDDAKGERGEQGIQGKAGRDGQKGDIINLWAGTNDEY
                     DALSSISSTTLYLITY"
     gene            complement(3331..>3515)
                     /locus_tag="PTC08_002202"
     CDS             complement(3331..>3515)
                     /locus_tag="PTC08_002202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683662.1"
                     /translation="KKETTVENIDDKDVVIVKIDDILPRGTYMLEIVVDDKYVFPSDE
                     SEKIEVTKSILGRTFE"
BASE COUNT          921 a          843 c          512 g         1239 t
ORIGIN      
        1 cagcagtgta taacgctgcc attccgaaac ctacgcccca accaactgga ccactaacac
       61 ctagagcggt cattgctgct gtagtcgccc cagtgtgtag taaacctgat acactgattg
      121 cagttgagca tttagatctg aatttatcat tactcacctg atttttcata tgtttttcaa
      181 cttctgaatt ataagttttt agttgttttt gtgctttttt accattttcg ccttttattg
      241 tggcattata gttttgcaca taagtctgaa cgtctttaac actcactcct aaatttgatg
      301 aattcaaatc tttttttaat ttaccctcat ctgatataac taaatcgcca tctttacttt
      361 tagctaaatt agagtaaata atatttgcca tttcttcatt tacctgctcg tctcctgctt
      421 gcgcttgtgt agtcttgttt tcacttgatg cgtttacgac gctgtctcct acacccaacg
      481 gacttagaac taaacctcca gataaaactg ctacacctaa aaacttcaga ttcttacttt
      541 tcataaataa ttcctcctaa gtattaaatg tttgcgtttt caatgtaaca tatatgtaat
      601 ataattgtaa gcactttaga atacaaaaaa attaatttac actatttaga aactgctatc
      661 gtatgcttat gaacccaact tttatttacc ggcgtataca tacgacacca gatatttcct
      721 tgctcatctt gaatttcttc gaagatataa accgtttctc ccttccctaa aattcccttc
      781 tcatgtccga atgaatagtt attgaagcta tctccggaac gctcacgtaa tgatgcattg
      841 tatttaatct taccgctata gtgtgctttt tcagaccacg gtttaattct tttagccgtt
      901 ttaggttgtt tcttgactgg aatcttctgc gtagcttttg acgtaggttt aggtgctggt
      961 ttcgattctt taggtttaga ctctttcgct acaccatcga gatatttcag tacatactta
     1021 tctactaccg acatatcttt cgaatatcca cacgcttcca atacgctctt tggaacaatc
     1081 ttatcagctt gtatttgata atgacccggc atttgattgc gtggattaat tccgtattct
     1141 ttgcagataa acactgcaat tttacacgca ttatcgaacg actttcttga acgctcttta
     1201 tcgctaaagt aacacgcctc tacacctact gcaatatcgt tagtgtcatc gccataccat
     1261 aagttatccg tagaagcata gtacaacaca tgtcatgctt tttcgtctaa cggtacgcaa
     1321 ttgatacact ctttgtcatc tacaaacaca tgcgctgaca cagtcgtagc ccacggttga
     1381 ttatacgtat tgttgtagta atttacattt tgttgcgctg tactatttct attacctgta
     1441 tcgtgaaaaa ctaagaactt cggatgacca ctatctaatc gttgtcctgt acgtctagtt
     1501 ccgattttca aaaactctgt atacgttggt actccgttcc aatctccaat atatttcttc
     1561 accattttac cattcccctt tgttgttttt acgtatgaat ctttttcgat atctaggtcg
     1621 tcaataaacg gaagcctaat tacgccccag aattctaaat catcgtagtt atgaattact
     1681 tcttcgactg gactaccgtt cccatgtgtc gtccaattct gatctagcga cttaaacaaa
     1741 tctaaattac cttcgactcc aagagccaca tgtccgcact tacctttgac ccaaacgcat
     1801 atatctaacg gctgtactac gaaggtttct ttattacgaa taaacttcct tcctttgggc
     1861 gctttccttc tattcttttg actgataata tccttcgcat gtccttcgaa atgccaatcg
     1921 aaatactttt taccgaatat aattatccag tcagcgcatt gtcccggcca tattccgtcg
     1981 ccatcatgca ttatgcctct ttgtcgttta gcccaccgca atgcttcact agcttttgtt
     2041 tcgtaaccta tcggcataaa tcgttctcct tactacagat tttctgcaaa ataaaaaacc
     2101 ggcattacac cgactcaaaa tggtttatat acggttgatt cctcaccaat cgttttcctg
     2161 cgtatattgc tacaatatct gtttcgccgt agaacacttc tttcgtaatc aataaattca
     2221 tatcgtcttg cactttaccg gatttcttcg taccgataac taataaatca ttgagcggat
     2281 atttttcagt ttccactcgt tcgtttcgtg ttatacctgt aggtacttcg tccttttatt
     2341 ctacttctct acggttaact attgtgccat ttaatcctcg cctcttaacg tatgattgcg
     2401 taggaagtag attgctgtcg tattctgcgg ttgcactgcg tactaatgaa ggtaaaacat
     2461 ctacaacgac gcgccattca gttttactat cgtctctaaa aaatactacc ttcgcagtta
     2521 ctacgcctga taagttgtat tgatcattcg ataacaacac agtaattgac gtatcactta
     2581 caaccatact ttcgatatcg tagctgacat cgttaattgt tagcgatgag tacgtatgat
     2641 tacccaatac tctacctaag ctacggttga ttacgatatc aaaacgacta ggatgtacag
     2701 ttatcttacg attacctaaa attactttcg ccatatatcg tcacctcaat acgtaattag
     2761 gtacaacgta gtgctgctaa tagaagacaa cgcatcatac tcgtcatttg tacctgccca
     2821 taaattaata atatcgcctt tttgtccgtc acgacccgcc ttaccttgaa taccttgttc
     2881 gccacgttcg cctttagcat catcttcgcc ttttagcaat ttcaaccatt cttcgatagt
     2941 tccagtgaac ccactgttct tcgcaagctc atacgcactt agaccatttg ttccgttcac
     3001 accatctcta ccgtcttgcc ctttcggaat agttagcgta gtctcatccg agaacttaac
     3061 caatatattt ccgtcttcta cacgttgact taagatagtt atcgactgac ctgcctcgcc
     3121 tttcgcgctt gcttctccac cttctccacg ctgtcctctc ggtatagtta cgtacgaatt
     3181 atcgctaaat ttaatgatta tattaccttc tttatctaag tccgcaccaa taacttctaa
     3241 tgaacgtcca tcacgcccac gtaacgcttc gagcaaaccc ttctctattt cgaacttgat
     3301 tagctcatca tatacagatt tattcactac ttattcgaat gtacgcccta aaatcgattt
     3361 agtaacctca atcttttcgc tttcatccga cgggaataca tacttatcat ctacgactat
     3421 ttctaacata taagtaccgc gaggaagtat atcgtctatt tttacgatta ctacgtcctt
     3481 gtcatcgata ttttctaccg ttgtttcttt tttat
//
LOCUS       DANHOL010000184         3479 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.186, whole genome shotgun sequence.
ACCESSION   DANHOL010000184 DANHOL010000000
VERSION     DANHOL010000184.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 3479)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3479)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3479
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.186"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            37..1527
                     /locus_tag="PTC08_002203"
     CDS             37..1527
                     /locus_tag="PTC08_002203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000792564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="B domain-containing protein"
                     /protein_id="HDK5683663.1"
                     /translation="MKTKYTAKLLIGAATISLATFISQGNAHASEQTTGLAPAQPVNF
                     DSINVTPDQKTFYQVLHMEGISEDQREQYLKQLHEDPSSAQNVFSESIKDAIHPERRV
                     AQQNAFYSVLHNDDLSEEQRDAYIGRIKEDPDQSQEVFVESLNVAPKAESHEDRLIEL
                     QNKNLMEANEALKALQQEDSIQNRRAAQRAVNKLTPDSANAFQKELDQINAPRDAKIK
                     ADAEAKKQAPEVSAPQIEDAPTTEVAPSPKQDMPKVDKKEEDKVESDTEVKEVPKADT
                     EKNPQSKDTSKTEQAKETPKVEQSPKTEKAEEAPKAETPQNGNKAQTEEAKPEVKDNV
                     KNTPSAPVLPETGKATTSTLESYWNSFKDSVNKGYTYIKQSLESGYQYLKGQYDYITK
                     KYNDAKYYTKMYSNHKSTIDQSVLAILGKTGSSAYIKPLNIEENSNVFYKAYAKTRNF
                     ATESINTGKVLYTLYQNPTVVKSAFTAIETANTVKNAISNLFSFFK"
     gene            complement(1581..2390)
                     /locus_tag="PTC08_002204"
     CDS             complement(1581..2390)
                     /locus_tag="PTC08_002204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020220246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HDK5683664.1"
                     /translation="MINMKHVFTIVYKDALDIKSDRGVLVSVFIIPFIFSLVLPLALV
                     IGDIHFSVVDYIGGARMFIDQLPEQVIPKSIDPHHGMVYAILMYFFIPFFILIPVFVS
                     SMLATTSFTGEKEHKTIEGLLYTPITNKELMLGKILVSGIPSILLTWIAVFIYGIIAN
                     VYGVNVLGEMIFPNFSWIMVTFFIAPLITFLSISLVVAVSQRVNTSKSAQSVSMILVL
                     PIIGFIISQANGVFLFGPMISIILVVVLIVVDIIVYLAVSKRFDSDKLLTK"
     gene            complement(2383..3318)
                     /locus_tag="PTC08_002205"
     CDS             complement(2383..3318)
                     /locus_tag="PTC08_002205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HDK5683665.1"
                     /translation="MLVRVNQLHKTLNGKDVINDISFTLKPGTINAILGPNGVGKTTT
                     VRLLTGLLQPTHGEIEVFGVKTTDPHFERVRQQMGVQNDGNLYENLTVYENLKIWARF
                     YDMPKAAVEDRIEALLTYFELTERKNSKVATLSKGLKQKVAIMRALIHQPKLLILDEP
                     TSGLDPSAAESLNTYLQKQVREREMTVFMCTHHLQGLEQIADYIFMMDQGRFIASGRA
                     EDLLRETWPQVEFDIHVRDVTRAWALLENEHAVVAKEHSDKEGYLRVKMEAYEDISQV
                     IKLLTEHQLDVYTVTEVQHTIKELYFKKMDVMPHD"
BASE COUNT         1288 a          724 c          533 g          934 t
ORIGIN      
        1 acaaaaaatc aacgaataaa cagaagggaa taaacaatga aaactaaata cacagcaaaa
       61 ttattaattg gggcagcaac aatatcttta gcaacattta tttcacaagg gaacgcacat
      121 gcgagcgaac aaactacagg actcgcaccg gcacaacctg tcaactttga ttcaatcaat
      181 gtaacgccag accaaaaaac attctatcaa gtcttacata tggaaggcat ttcagaagat
      241 caacgtgaac aatatttgaa acaattgcac gaagacccaa gtagcgcaca aaatgttttt
      301 tcagaatcaa ttaaagatgc catccacccg gaacgtcgtg ttgcgcaaca aaatgcgttt
      361 tacagcgtat tacacaacga tgacttatcc gaagagcaac gtgatgcata cattggtaga
      421 attaaagaag atccagatca aagccaagaa gtatttgttg agtctttaaa tgtggcacca
      481 aaagcagaat cacatgaaga tcgcctcatt gaattacaaa acaaaaattt aatggaagca
      541 aatgaagcac ttaaagcgtt acaacaagaa gacagcattc agaatagacg tgcggctcaa
      601 cgtgctgtca acaaattgac gccagatagc gcgaacgcat tccaaaaaga attagatcaa
      661 atcaatgccc cacgcgacgc taaaattaaa gctgacgctg aagcaaaaaa acaagcacct
      721 gaagtaagcg caccacaaat tgaagatgca cctactactg aagttgcacc atctccaaaa
      781 caagatatgc caaaagtaga taaaaaagaa gaagataaag tagaaagtga tactgaggtc
      841 aaagaagtac ctaaagctga tacagagaaa aaccctcaat ctaaagacac ttctaaaact
      901 gaacaagcta aagaaacacc taaagtagag caatcaccta aaacagaaaa ggctgaagaa
      961 gcacctaaag cagaaacacc tcaaaatgga aataaagcac aaactgaaga agctaaacca
     1021 gaagtaaaag acaatgtgaa aaacactcca tctgcacctg tgttacctga aacaggaaaa
     1081 gcaacaactt caacacttga aagctactgg aattctttca aagacagtgt gaataaaggt
     1141 tatacttaca ttaaacaaag cttagaaagt ggttatcaat atttaaaagg tcaatacgac
     1201 tatatcacta aaaaatacaa tgatgcgaaa tactatacaa aaatgtattc aaatcataag
     1261 tctacaattg atcagtctgt attagctata ttaggtaaaa ctggatctag cgcatatatc
     1321 aagccattaa atatcgaaga aaattcaaac gtattttaca aagcttatgc aaaaacaaga
     1381 aactttgcta cagaaagcat taacacagga aaagtattat acacattata tcaaaaccct
     1441 actgtagtta aatctgcttt cactgcaatt gaaacagcaa atacagtaaa aaatgcaata
     1501 agcaatcttt tctctttctt caaataaagt aaaaatagac atcggacaat tctcatgttc
     1561 gatgtctatt ttaattcatg ctattttgtt aacaatttat ccgagtcaaa ccttttcgaa
     1621 acggctaaat aaacgataat atcgactaca attaacacga caacgagtat tattgaaatc
     1681 atcggtccaa acaaaaatac tccgttcgct tgtgaaatga taaaaccaat aataggtaat
     1741 accaatatca ttgacacgga ctgggcggat ttgcttgtgt tcactctttg cgacacagcc
     1801 acaacgagtg aaatagacaa aaacgtaatt aacggcgcaa taaagaaagt aaccattatc
     1861 caactaaagt tcggaaaaat catctcacct aacacattga cgccataaac attagcgata
     1921 ataccataaa tgaatactgc aatccaagtg agcaaaatcg atgggattcc tgaaactaaa
     1981 atctttccga gcatcaattc tttatttgta ataggcgtat agagcaaccc ttcaatcgtt
     2041 ttatgttcct tctcacccgt aaagcttgtt gtagctaaca tactagaaac aaataccggt
     2101 ataaggataa aaaacggaat aaagaaatac atcaaaattg cataaaccat gccgtgatga
     2161 ggatcgatag atttcggtat gacttgttcg ggcaactggt caatgaacat tcttgcaccg
     2221 ccaatataat caacgacact aaaatgaata tcaccaatca ctaacgctaa cggtaacact
     2281 aaactaaaaa taaatgggat aataaatact gatactaaaa ccccacgatc acttttaata
     2341 tccaatgcgt ccttataaac aattgtgaag acgtgtttca tattaatcat gcggcatcac
     2401 atccatcttc ttgaaatata attctttaat cgtatgttgc acttcagtga ccgtatagac
     2461 atctagttga tgttcagtaa gcagtttaat gacctgggaa atatcctcat aagcctccat
     2521 tttcacacgg agataccctt ctttgtcact atgttctttg gcgaccactg catgttcatt
     2581 ttccaataaa gcccatgcac gtgtcacatc acgcacatga atatcgaatt ccacttgtgg
     2641 ccaagtttca cgcaacaaat cttccgctct gcctgaagca ataaaacgac cttgatccat
     2701 cataaaaata taatccgcaa tttgttctaa cccttgtaaa tggtgtgtac acataaatac
     2761 tgtcatttcc ctctcacgca cttgcttttg taaataagtg ttgagtgatt cagctgctga
     2821 tggatccaag ccagatgttg gttcgtctaa aatcaatagt ttcggttggt gaataagcgc
     2881 acgcataatc gccacttttt gcttcaatcc tttactcaac gtcgctactt tgctattttt
     2941 gcgttccgtt aactcaaaat aagttaacag cgcttcaatc ctgtcttcaa ctgctgcttt
     3001 tggcatatcg taaaaacgcg cccatatttt taagttttca tacactgtta ggttttcata
     3061 cagattccca tcattttgca cacccatttg ttgacgtaca cgctcaaaat ggggatctgt
     3121 cgtctttaca ccaaatactt caatttcacc atgcgtcggt tgcaataaac ctgtcagtaa
     3181 ccgaactgtc gttgttttcc ctacaccgtt cggccctaaa atcgcattaa tcgttcccgg
     3241 tttcaaagta aaagagatat cattaatcac atctttacca tttaacgtct tatgtagttg
     3301 gttcacacgg actaacatta tcctcacctc tctcatcgtt gtttactttt cacagcacta
     3361 atcacataaa ttttatcact ttttttcaca aaatacatta aaattcatca tttttatata
     3421 aaattattct aatcacttga tattttttaa aaataacttg cttgtcatat aaatcacac
//
LOCUS       DANHOL010000185         3347 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.187, whole genome shotgun sequence.
ACCESSION   DANHOL010000185 DANHOL010000000
VERSION     DANHOL010000185.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 3347)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3347)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3347
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.187"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(340..675)
                     /locus_tag="PTC08_002206"
     CDS             complement(340..675)
                     /locus_tag="PTC08_002206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5011 domain-containing protein"
                     /protein_id="HDK5683666.1"
                     /translation="MNKILQSLSALGVSATLVSPNLNAEATTNTVPSIKGVDDLVIKV
                     GEDYNPCDGVKAYDKEDGDLTDKIKVNGHIDTTKQGIYTLQYEVTDSDGAIETSSRTI
                     KVVDARLNE"
     gene            903..2048
                     /locus_tag="PTC08_002207"
     CDS             903..2048
                     /locus_tag="PTC08_002207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitric oxide dioxygenase"
                     /protein_id="HDK5683667.1"
                     /translation="MLTQEEKGIILETVPVLKEKGTAITSNFYHRMFNQHPELRNMFN
                     QTNQKKGFQSTALAQSVLAAAMNIEDLTPILPVVKEIGYKHCALQVLPEHYPIVGENL
                     LAAIQEVVGIDENHPIIQTWAKAYGVIADAFIMVEKEIYEGMAWDGFKPFKVSKIETV
                     TPDIKAFTVTSETQDLSQFTPGQYITVDIESEKLPYKAKRHYSIVDGGKDFLTFGVKR
                     DVNEGHEGEVSTALHDEVHEGDTLYLSAPVGGFKIHHPERPQLFLGSGVGITPLISMY
                     RQVAGDAVSAQMIHVAATETAAAFVPELEHITASGKNNHLHIHLRDREGYLEADELKT
                     YLSDNTEVYVCGGTAFLQSMLKSLQALGVEQERVHFETFVPRLSVPV"
     gene            complement(2359..3216)
                     /gene="folD"
                     /locus_tag="PTC08_002208"
     CDS             complement(2359..3216)
                     /gene="folD"
                     /locus_tag="PTC08_002208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional methylenetetrahydrofolate
                     dehydrogenase/methenyltetrahydrofolate cyclohydrolase
                     FolD"
                     /protein_id="HDK5683668.1"
                     /translation="MSAKILDGKQIAKDYRQGLQDEVERLKEQGYTPKLSVILVGNDG
                     ASQSYVRSKKKAAEKIGMISEVIHLEESTSEADVLKELDRLNQDDSVSGILVQVPLPD
                     HVDEQKVLDAIDPDKDVDGFHPINIGRLYLDNAQLIPCTPLGVMELLKHADIELEGKN
                     AVVIGRSHIVGQPVAKLLLQQNATVTILHSRSQNISEHLKQADVIVSAVGRPGMVTKD
                     DVKPGAVVIDVGNTPDENGKLKGDVEYDEVKEVAGAITPVPGGVGPMTITMVLNNTLI
                     AEKMRRGIE"
BASE COUNT         1091 a          601 c          631 g         1024 t
ORIGIN      
        1 tacattttgt gaaatgtcac aatgtttact tattaatgaa gaaaaaaggg ggaaataata
       61 aaattcacgt ctgttaacag aaaattctta cggcttagac agaggggatt ttgaattgaa
      121 atttagggaa ttgactaata aaagtttgtg aaaaaaagtg taaaataaaa gtgtagggtg
      181 cgatagtata tagagcctga tgatgaaaag gtaagttctg ctctatatac tatgtgggat
      241 gatgatggga ttcagtttcg atgcttagga taaaacaatg gacaagttgg cgacaaaata
      301 tgataaaacg ttatgcattt ataataattg tattgttagc tactcgttaa gtcgggcgtc
      361 tacaacttta atggtacgtg atgacgtttc tatagcacca tcagaatcag tgacttcata
      421 ttgtaatgta taaatacctt gtttcgttgt atcaatatgt ccattgacct taattttatc
      481 agtcaagtca ccgtcttctt tatcatatgc tttgacacca tcacaaggat tgtagtcctc
      541 gccgactttg atgactaaat cgtctacacc tttgatagag ggaacagtat tcgtagttgc
      601 ctctgcatta agattaggtg aaacaagtgt cgctgataca cccagtgctg ataaagattg
      661 aagtattttg ttcataaaat aaggcctcca ttcaacgcaa tgatttcgat gtcgtgtgat
      721 taattagtat tatacatttt tgagcaaaat aagctatcct actatggacc gaattatgat
      781 taaaaatttg taagtttatt gaatgattga aagcgttgat gtaaagacgg tttattaata
      841 gcgcgcgcta tatcaattca tataaactat aaaatgtaaa ctttaaacag gagtgatgat
      901 caatgttaac gcaagaagaa aaagggatta ttttagaaac agtaccggta ttaaaagaaa
      961 aaggaacagc aataacttct aatttttacc atcgcatgtt taaccaacac cctgaattac
     1021 gtaacatgtt taatcagacg aaccagaaga aaggattcca atctactgca ctggctcaat
     1081 ctgtattggc tgctgcgatg aacattgaag atctaacacc gattttgcca gtagtgaaag
     1141 aaattggcta taaacattgt gcgttacaag tattaccaga gcattatcct attgtaggag
     1201 aaaatttact agcggcgatt caagaggtcg taggtattga tgaaaatcac ccaatcattc
     1261 aaacttgggc aaaagcgtac ggcgtaattg cagacgcatt tattatggtt gaaaaagaaa
     1321 tctatgaagg catggcttgg gacggtttta aaccatttaa agtatcaaaa attgagacag
     1381 taacacctga cattaaggca tttacagtca cttctgaaac acaagattta agtcaattca
     1441 caccaggaca atacattaca gtcgatatcg aaagtgaaaa attaccgtac aaagcgaaac
     1501 gacactattc cattgttgat ggtggcaaag atttcttaac atttggcgtt aaacgtgacg
     1561 tgaatgaagg acatgaaggt gaagtatcaa cggcattaca tgatgaagtt catgaaggag
     1621 acacattata cttatctgcg ccggtgggtg gtttcaaaat ccatcatcct gagcgtccgc
     1681 aattattcct tggttcaggt gtaggaatta cgccactcat ctcaatgtat cgtcaagttg
     1741 caggtgatgc tgtatctgca caaatgattc atgttgcggc aactgaaaca gcagcggcat
     1801 ttgtacctga gcttgagcat attactgcat caggtaaaaa caatcattta cacattcatt
     1861 tgagagacag agaagggtat ttagaagcag acgaattaaa aacgtacctt tcagataata
     1921 cagaagttta cgtttgtggt ggcacagcat ttttacaatc gatgcttaaa tcattacaag
     1981 cattaggtgt ggaacaagag cgcgtccatt tcgaaacgtt tgtaccgcgt ttaagtgtac
     2041 ctgtataaaa aagagattgt cagagtctag gacatagccc ccctagttcg ttaaaaaagc
     2101 gatgttgagt gcgaacttgg cataacactc atggcagtaa atatacggaa actggccaaa
     2161 ataagtgcta gttttcgttc gctaattaag aaaaaagccg tcaaattcta aaaaatgaat
     2221 tttgacggtt ttttcttaat gaatatgaag gtctgtgtcc cagcccctga ctgttcatcg
     2281 gaaaatgaga atgaattagg gtacaaaaac attgcatcaa tcgcatcaaa aattgttgtc
     2341 ttttatgcct tcatctcact attcgatacc gcgacgcatt ttttcagcga ttaacgtatt
     2401 attcaatacc attgtgattg tcattggacc tacaccccca ggtacaggtg taattgcacc
     2461 agctacttct ttcacttcat cgtattcgac atcgccttta agcttaccat tttcatctgg
     2521 tgtattgccg acatcaatga caacagcacc tggtttcacg tcatctttcg tcaccattcc
     2581 tggacgacct actgcgctaa caatcacatc agcttgtttt aaatgttcac taatattttg
     2641 actgcgagag tgtaaaattg tcactgttgc attttgttga agtaataatt tcgcaacagg
     2701 ttggccaaca atatgactgc gaccgatgac tactgcattt tttccttcaa gttcaatatc
     2761 agcgtgcttt aataattcca tcacgccaag gggggtacaa ggaattaatt gtgcattgtc
     2821 taagtataag cgaccgatat tgatagggtg aaaaccatcg acatctttat ctggatcaat
     2881 cgcatcaagc actttttgct catctacatg atcagggagt ggcacttgaa ctaaaatacc
     2941 actaactgaa tcgtcttggt tcaaacgatc taactctttt aaaacatctg cttctgaagt
     3001 actttcctct aaatgaatca cttctgaaat catgccgatt ttttcagctg ctttcttttt
     3061 agaacggaca taactttggc tcgcaccgtc attcccaact aaaataaccg aaagttttgg
     3121 tgtatagcct tgttctttca atctttctac ttcatcttgt aaaccttgac gataatcttt
     3181 cgcaatttgc ttgccatcta aaatctttgc actcataaaa tattagcctc ctcataataa
     3241 ttcgaacatt aacgaatgat tgcaatttga ttataacaaa aatgaactga aatacgaaat
     3301 atagatgtta aaaaagtatt aaagttcgat ttttgcgttg aaaaaac
//
LOCUS       DANHOL010000186         3316 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.188, whole genome shotgun sequence.
ACCESSION   DANHOL010000186 DANHOL010000000
VERSION     DANHOL010000186.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 3316)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3316)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3316
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.188"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(560..2002)
                     /locus_tag="PTC08_002209"
     CDS             complement(560..2002)
                     /locus_tag="PTC08_002209"
                     /EC_number="3.2.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-beta-glucosidase"
                     /protein_id="HDK5683669.1"
                     /translation="MSKLPASFMWGGALAANQFEGGYDQGGKGLSVIDVMTGGAHRKT
                     REITMSVEADKYYPNHVGIDFYHRYKEDIALFKEMGLQCLRTSIAWTRIFPNGDELEP
                     NEEGLQFYDNIFDELLKNNIEPIITLSHFEMPLHLAREYGGFRNRKVVDYFARFAQVV
                     FERYKDKVTYWMTFNEINNQMDTGNPIFLWTNSGVSLNDNDNPEEVLYQVAHNELIAS
                     AKAVKIGKMINQNFKIGSMISYVPIYPYSCHPKDMMKAQIKNRLRYFFPDVQVRGYYP
                     SYAKKMFEQKGYHIGWQDGDEEILREGVVDYIGFSYYMSTVVKHDTQTGVSNNIINSG
                     LPNSVENPHIKISEWGWAIDPEGLRYTLNVLYERYQVPLFIVENGFGAIDKVENNQIH
                     DDYRINYLREHIEAMIDAVDKDGVDLIGYTPWGIIDIVSFTTGEMKKRYGLIYVDRDN
                     EGRGTLERLKKDSFYWYQKVIETNGKDLGE"
     gene            2324..3031
                     /locus_tag="PTC08_002210"
     CDS             2324..3031
                     /locus_tag="PTC08_002210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HDK5683670.1"
                     /translation="MLLKYEKIAHDIHTFITNHQFKAGDKLPSVTTLKEKYEVSKSTI
                     IKALELLEHDGIIYQAQGSGIYVRNARNDNHINVFKTNGFSKSLNEHQLTSKVLKLEE
                     ITDIPETVMQELNLSKGDSVYYLERLRYVDGNVLCIEYSYYNKEIVKYLNTEITEGSI
                     FDYLEQNMQVKVGFSDIYFNADQLNTNEAQLLKLEPNDPCLRYHQTFYTTTGIPFDAS
                     DIVFHYKNAHFYIPSKR"
BASE COUNT         1073 a          687 c          456 g         1100 t
ORIGIN      
        1 gcctctcaca tacatctata atttggattt cagatctttt gaaagcactt atgtctccaa
       61 aactactcct acccttgaaa attaaatcat agaagcgatg tccaaaacaa ataacaaaat
      121 catatcaacc acaacaactt tttcatctta tactcgttct tttaattgat ccaacattaa
      181 tattgcccat tcgaaaattt gcatgctcac ttaacaaatt gagatgatac cttgtcttca
      241 taatgataca cacctagaag ccatttcaaa acctttaact tctccttgtt caaaagattg
      301 aaacgataca tcgtcgcctt atgttgcatg cgtaccgtac tccccacata acataagtat
      361 cttttccaac cgtttaacat tttagcaact ctctttcgtt aatttccttt accaaagatg
      421 aaaaatgtgt ttttgtcttc gcaatactaa atttaaatga agcaatgcct ctcgattaaa
      481 gtgaatctaa ttatcaaaaa atgtaccttt caaaccagtc acatccaacc aaagcatgcc
      541 ttttcacata ctctttaagt tattcaccta aatctttacc atttgtttct atcacttttt
      601 ggtaccaata gaacgaatct ttcttcaacc tttctaatgt ccctcgccct tcattgtccc
      661 tgtccacata aatcagaccg taacgctttt tcatctctcc tgtcgtaaat gaaacgatat
      721 cgataatacc ccagggtgta taaccaatta aatccacgcc atctttatca accgcatcaa
      781 tcattgcttc tatatgttct ctcaaataat taatacggta atcatcatga atttggttgt
      841 tttccacctt atctatcgca ccaaaaccat tttctacaat gaataaagga acttgataac
      901 gttcatatag aacattaagc gtataacgta gcccttctgg atcgatagcc catccccact
      961 cacttatttt aatgtgtgga ttttcaactg aattaggaag accactattg atgatattat
     1021 tactaacacc agtctgtgta tcatgtttta cgactgtaga catgtaataa ctaaagccaa
     1081 tgtaatcgac aacaccttct cgtaaaatct cctcgtctcc atcctgccat ccaatatgat
     1141 accctttttg ttcgaacatt tttttagcat agctcgggta ataacctctt acttgtacat
     1201 caggaaagaa ataccttaat cgattcttaa tttgtgcctt catcatatct ttcggatgac
     1261 aagaatatgg ataaatgggt acataagaaa tcatactacc aattttgaag ttctgattaa
     1321 tcattttacc gattttgacc gcctttgcgc ttgcaatcaa ttcattatgt gcaacttgat
     1381 acaatacttc ttcaggattg tcattgtcat ttaaacttac acccgagttt gtccataaaa
     1441 aaatcggatt acccgtatcc atttgattat taatttcgtt aaatgtcatc cagtacgtga
     1501 ctttatcttt gtatctttca aatacaactt gtgcgaaacg agcaaaataa tccactactt
     1561 tacggttacg aaaaccgcca tattcacgtg ctaaatgtaa tggcatttca aagtgtgaca
     1621 atgtaataat cggttcgata ttattcttga gtaattcatc aaagatatta tcataaaatt
     1681 ggagcccctc ttcattaggt tctaactcgt caccgttcgg aaaaatacgt gtccaagcga
     1741 ttgacgtccg aaggcattgt aatcccattt ctttaaacag ggcaatatct tctttgtaac
     1801 gatgataaaa atcaatacct acgtgatttg ggtaatattt atccgcttct actgacattg
     1861 ttatttctct cgtttttcta tgtgcgcctc ctgtcatcac atcgataaca cttaaccctt
     1921 tccccccttg atcatagccg ccttcaaatt gattggcagc tagagcgccg ccccacataa
     1981 aacttgctgg taatttagac atcatccatt gcctccttta tttttttaat ggttcaaaat
     2041 tgattttctt tagttatctg tttctcttct gtaataagaa cgccttcaaa atctgttgaa
     2101 ttcgtcacat caataggaat tacacattca tagccattat tttcaatttg cttttttgaa
     2161 ttttaaaaac tgctagccta gtttgacatt ttcattttct ttaaaaaact tcaaagtctt
     2221 caacgtccat tataattgta ccggttcaat ttgtccataa cgatacaaaa taaaaaacga
     2281 cacatgttat aataaattat ctagaaattg aaatgagggc ttattgttgc tgaaatacga
     2341 aaaaatcgct catgatattc atacattcat cacaaaccat caatttaaag caggagataa
     2401 attgccgagt gtcacgactt taaaagaaaa atatgaagtc agtaaaagta cgattattaa
     2461 agcattagaa ttacttgaac atgacggcat tatttatcaa gcacaaggca gtggcattta
     2521 tgtaaggaat gcgagaaatg acaatcacat taatgtcttc aaaacaaatg gtttttcaaa
     2581 aagtttaaat gagcaccaac taacaagtaa ggttttaaaa ttagaagaaa tcactgatat
     2641 tcctgagaca gtcatgcaag aactgaattt atcaaaaggt gatagtgttt attatttaga
     2701 aagactacgc tatgtcgatg gcaatgtgtt atgtattgaa tattcttatt acaataaaga
     2761 aatcgtcaaa tatttgaata ctgaaattac agaaggatct atctttgatt atttagaaca
     2821 aaacatgcaa gttaaagttg ggttttccga tatttatttt aatgctgatc aactcaacac
     2881 taatgaagca caactcttaa aactcgaacc caatgacccg tgcttacgtt accaccaaac
     2941 tttttacact actactggta taccattcga cgcatcagat attgttttcc attacaaaaa
     3001 tgcccatttc tatataccga gcaaaagata gaaatgccgt aaaaagccgg taatatgcac
     3061 atctcgtgaa tattatcggc ttttaagtac tttgcttcag gtattaagtt agcccggaca
     3121 ccttgacccc agtttggata caacaatgtc gacatcatat aaacattgtg cgttgcgagt
     3181 tttaactctg ggtcaacgtg ctcttgcacc gctttgacgg ttcgctgatt gcatactaaa
     3241 gtgcccacga taattaaaaa aacaactatg actaaagaca tgaactgctt gaatcctatc
     3301 attcttttca ttttat
//
LOCUS       DANHOL010000187         3302 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.189, whole genome shotgun sequence.
ACCESSION   DANHOL010000187 DANHOL010000000
VERSION     DANHOL010000187.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 3302)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3302)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3302
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.189"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(275..1735)
                     /locus_tag="PTC08_002211"
     CDS             complement(275..1735)
                     /locus_tag="PTC08_002211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HDK5683671.1"
                     /translation="MLTAIDYLTKKGWKISSDPRTYDGYPKSYGYRNYQENGINYDEF
                     CGGYHRAFDVYNNTTDDVLAVTSGTVIEANDHGNFGGTFVIKDDNDNEWIYGHLQRGS
                     MRFVVGDKVNQGDIIGLQGNSNYYGNPMNVHLHIQLRPKDAPKDEKSQVCSGLAIEKY
                     DITKLNAKQDKSKNGSVKELKHIYSNHIKGNKITAPKPSIQGVVIHNDYGSMTPSQYL
                     PWLYARENNGTHVNGWASVYANRNEVLWYHPTDYVEWHCGNQWANANLIGFEVCESYP
                     GRISDKLFLENEEATLKVAADVMKSYGLLVNRNTVRLHNEFFGTSCPHRSWDLHVGKG
                     EPYTTTNINKMKDYFIKRIKHYYDGGKLEVSKAATIKQSDVKQEVKKQEAKQIVKATD
                     WKQNKDGIWYKAEHASFTVTAPEGIITRYKGPWTGHPQAGVLQKGQTIKYDEVQKFDG
                     HVWVSWETFEGETVYMPVRTWDAKTGKVGKLWGDIK"
     gene            complement(1737..1985)
                     /locus_tag="PTC08_002212"
     CDS             complement(1737..1985)
                     /locus_tag="PTC08_002212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose transporter subunit IID"
                     /protein_id="HDK5683672.1"
                     /translation="MEDKIKQFIALIGGFVGALYLALQASGISAEWINPQAVDAWINV
                     LNTGVPLALVAYGVWKNTFIVKKSAREQEEYLKEKGLK"
     gene            complement(2032..2427)
                     /locus_tag="PTC08_002213"
     CDS             complement(2032..2427)
                     /locus_tag="PTC08_002213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683673.1"
                     /translation="MNDDNKFVLRHEWENSRGKIYEKINENDRKHTEALNKLEKTVDR
                     QVLLQERAFESQERSEKHLETLNETMLKFGNDFTEIRFKVQTHDEKLEDISNDISEKQ
                     KGNVQITTTIITGIFGVIMAALGLAHYFF"
     gene            complement(2411..2833)
                     /locus_tag="PTC08_002214"
     CDS             complement(2411..2833)
                     /locus_tag="PTC08_002214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683674.1"
                     /translation="MKKQTFSETIAFVLIFGLSAFTFVRALFWSYEQNKVIKDSEFYL
                     RLHEVMPIWAWGYLLMIASIILMSSAFFLPRQPYNNICNWLLLVGGLSSAIIYFLMTS
                     ASIFNAINWLTWAQFAVLTVVCGAIGFLGGAAIYERRQ"
     gene            complement(2871..3173)
                     /locus_tag="PTC08_002215"
     CDS             complement(2871..3173)
                     /locus_tag="PTC08_002215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683675.1"
                     /translation="MNQITEYYLVEVNKQGEESPLTQNYSNSFMRGATPNTAFKFNEE
                     EKVKQACKIQNMLAGIFNNGTETYYVKQEVTRTKYNQDGTVYEETAEEPSMREETE"
BASE COUNT          905 a          711 c          525 g         1161 t
ORIGIN      
        1 tttttaggat caaaaaaact atgattgaaa atttcccttt ctctagcata ctctttttcc
       61 gcatcggcaa aaccaaaagt aaattcattt aatttcaata tccccacccc ttagtgcaag
      121 tataataaat tttacaaaaa gctacgcatt atatagatag ctgaaattaa tgccggattg
      181 gttaccggta atttatatgt attatagcat aaaaaaacag ggcagtcgca atgaccgccc
      241 tttcatgtcg tggatataca tagtatatca tactttattt tatatcgccc cacaacttgc
      301 cgactttacc agttttagcg tcccatgtgc gtaccggcat gtatacagtt tcgccctcaa
      361 acgtttccca cgatacccaa acatgaccgt caaatttttg aacctcatca tatttaatcg
      421 tttgaccttt ttgtaataca ccagcttgtg ggtgaccagt ccaaggacct ttgtatcttg
      481 tgataattcc ctctggtgct gtcactgtga acgaagcatg ttcagcttta taccaaatgc
      541 catctttatt ctgtttccaa tctgttgctt tcacaatttg ttttgcttct tgctttttaa
      601 cttcttgctt aacgtcagat tgtttgatag ttgctgcttt gcttacttct agctttccac
      661 cgtcataata atgtttgatg cgtttgatga agtagtcttt cattttatta atattagtag
      721 ttgtgtaagg ctcacctttg ccaacatgca agtcccacga acgatgtgga caagaagttc
      781 cgaagaattc gttatgcaga cgtacagtgt tgcgattaac tagtaatccg tacgacttca
      841 tcacatccgc agctactttc aatgtcgctt cttcattttc taagaataat ttgtccgaga
      901 ttctaccagg atacgactca cacacttcaa atccgattaa gttagcattt gcccattgat
      961 taccacaatg ccactctacg tagtctgtcg gatgatacca aagcacttcg tttctatttg
     1021 cataaacact agcccaaccg ttaacgtgtg taccgttatt ctcacgtgca tataaccatg
     1081 gtaagtattg actaggtgtc atactaccat aatcattgtg gatgaccaca ccttgaatac
     1141 taggttttgg tgctgtaatc ttgttacctt taatatggtt tgaatagata tgtttcaact
     1201 ctttcacgct cccattcttt gatttatctt gttttgcgtt taattttgta atgtcgtact
     1261 tttctatagc taaaccactg cacacttgtg atttttcgtc tttcggtgca tctttaggtc
     1321 gtaattgaat atgcaaatgc acattcatag gattgccgta atagttgcta ttaccttgca
     1381 aaccgataat gtcaccttga ttgactttgt cgcctacaac aaatcgcatt gaaccacgtt
     1441 gaagatgtcc gtatatccat tcgttatcgt tgtcatcttt aatgacgaat gtaccgccaa
     1501 aattaccgtg atcattcgct tcaataactg tcccgcttgt gacagctagc acatcgtcag
     1561 ttgtgttgtt gtatacgtcg aaagcacgat gatatccacc gcaaaactca tcatagttga
     1621 tgccgttttc ttgataattt cggtagccat agcttttagg ataaccgtca taagttcgag
     1681 ggtcggaaga aatcttccaa ccttttttcg taagatagtc aatagcagtt agcatgtcac
     1741 ttcagccctt tctctttaag gtattcctct tgctcacgtg ctgacttttt aacgataaat
     1801 gtattcttcc acacgccata cgccactaac gctaatggca cgccagtgtt taacacatta
     1861 atccatgcgt ccactgcttg cggattaatc cattccgcac tgattccgct agcttgtaac
     1921 gccagatata aagcacccac aaagccaccg attaaagcga taaattgttt gattttatct
     1981 tccatattta tttcctcctt aaaataaaaa gtcgacacat cagtgccgac cttaaaaaaa
     2041 gtaatgcgct aaccctagcg ctgccatgat aacgccgaaa atgccagtaa taatcgtcgt
     2101 tgtaatttgt acatttcctt tttgtttttc tgagatgtcg ttagaaatgt cttctagttt
     2161 ttcgtcatgt gtttgtactt taaatctaat ctctgtaaag tcattaccaa atttaagcat
     2221 tgtttcgttt aatgtttcaa gatgtttttc tgaacgctct tgagactcaa aggcacgctc
     2281 ttgtagtaaa acttgtctat caactgtctt ttctaatttg ttcagtgctt ctgtgtgttt
     2341 acgatcattc tcgttaattt tctcatatat cttacctctt gaattttccc attcgtgcct
     2401 taaaacgaat ttattgtcgt cgttcataaa tcgccgcacc tccgaggaaa ccaatcgcac
     2461 cacacacaac agttaataca gcaaattgtg cccatgtcag ccaattaatc gcattgaata
     2521 tacttgcact cgtcatcaaa aaatagataa tagcgcttga taatccgccc actaaaagca
     2581 accaattaca tatgttattg taaggttgtc gtggcagaaa aaaagccgat gacatcaaaa
     2641 ttatggacgc aatcatcaat aaataacccc acgcccagat aggcataact tcatgtaatc
     2701 tcagataaaa ttcagaatct ttaatgactt tgttttgttc ataagaccaa aaaagcgctc
     2761 ttacaaaagt aaaagcactt aatccaaaaa ttaaaacaaa tgcaatcgtt tcactaaaag
     2821 tttgcttttt caaataactg tacctcctct gtctctattt gtttagaggt ctattctgtc
     2881 tcttctctca ttgacggctc ctctgctgtt tcttcgtaca ctgtgccgtc ttgattgtac
     2941 tttgtacgcg tcacctcttg ttttacatag tatgtctctg tgccgttgtt aaaaattcct
     3001 gcgagcatgt tttggatttt gcacgcttgt ttcacctttt cttcttcgtt aaatttaaaa
     3061 gctgtgttag gtgttgcacc tctcataaaa ctgtttgaat agttttgtgt caaaggactt
     3121 tcttctcctt gtttattaac ttcaactaag taatattcag tgatttgatt catgataatt
     3181 cctcctaaat ttttttaata tattaaaaat agccttactc ttgttgagca ggctcatttt
     3241 taacgtgttt taattgttcg atatatgctt taagtattct attctcatga ataagttgat
     3301 tg
//
LOCUS       DANHOL010000188         3296 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.190, whole genome shotgun sequence.
ACCESSION   DANHOL010000188 DANHOL010000000
VERSION     DANHOL010000188.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 3296)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3296)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3296
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.190"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(26..973)
                     /locus_tag="PTC08_002216"
     CDS             complement(26..973)
                     /locus_tag="PTC08_002216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017722135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDK5683676.1"
                     /translation="MTESTSIMETLFHQLDERTQNLNEENGQSFIENLGLAMEQLYTS
                     ERDMLEQATLQDRRKAFQFAYLNQLQKEEVQANHQITPDSIGLILGFLVSQFKEGTKE
                     LHIADLGSGTGHLSATVHEVMSDFTIMHHLVEVDPVLSRVSVHLANFLEIPFDVYPQD
                     AIMPLPFDGADVVIGDLPIGYYPNDARSEQLQLGFDEGHSFAHHLFIEQAIEAVKPSG
                     YAFLVVPSQLFEGDYVKQLENFIATETEMQAFLNLPKTLFKSERAQKSILILQRKEHN
                     VTKPVEVLLANIPDFKNPQNFQQFLSELKTWLSQNQPKN"
     gene            complement(1181..1675)
                     /gene="tpx"
                     /locus_tag="PTC08_002217"
     CDS             complement(1181..1675)
                     /gene="tpx"
                     /locus_tag="PTC08_002217"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002446674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol peroxidase"
                     /protein_id="HDK5683677.1"
                     /translation="MAQITFKQNPVELLGQEVNIGDQAPDFTVVDNNLQPVTLATYEG
                     KKKLVNVVPSLDTGVCDQQTRKFNEEASTEDGYVLTISMDLPFAQQRWCASSGLDNVI
                     TLSDYQSRSFGQNYGVMMDGLQLLARSVFVLDENNKVVYKEIVAEGTDFPNFEAALEA
                     YRNI"
     gene            complement(1739..2323)
                     /locus_tag="PTC08_002218"
     CDS             complement(1739..2323)
                     /locus_tag="PTC08_002218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HDK5683678.1"
                     /translation="MQHSNEFNYNPSQPRPEMSRPMNSHQAEGLATKTIEKHRYELDA
                     FFYAGFGRRFLSYIIDLAILWGVTQIVLNPIYGLTGIDSWKLWIDKFSLGHMLDVLIY
                     FGYFVLMTKYFQQTVGKMIVGIKVYHRKLTRLNWSDVLMREWIGRIISNVFFGLPYLA
                     VLFTPKHIGVHDYFADTVVVKNKYLHYIKETEGI"
     gene            complement(2333..3265)
                     /gene="sppA"
                     /locus_tag="PTC08_002219"
     CDS             complement(2333..3265)
                     /gene="sppA"
                     /locus_tag="PTC08_002219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002483029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptide peptidase SppA"
                     /protein_id="HDK5683679.1"
                     /translation="MSAMTTVVSSLMSGDFNINKEATSTVLEEGDSNKKIAEIVVEGE
                     IIDTGASGGLFGGGTGYNHQAALKQLETIKNDDSIKGVLLSVNSPGGGTYESDEFYQK
                     IKEVKDSGKKIFVQMENLAASGGYYISAPADKIYAGPQSLTGSIGVISESKDYSELLD
                     NLGIKTNTIKSGAHKDILSSSRKMTDEEREILQSINKDSFDQFVNVVKEGRQMSESKV
                     RELADGRIYSAQQAKSNGLIDAIGYKDKTLKDLKKAIKVENPEIITFDPEESNLTSFL
                     GMKSFINGLRAELKDVKSIINNESQTRPMYKYEG"
BASE COUNT          973 a          690 c          535 g         1098 t
ORIGIN      
        1 agtttgattt caagggtgta acagactaat ttttaggttg attttgtgac aaccaagttt
       61 taagttcaga taaaaattgt tggaagtttt gtgggttttt aaaatctgga atattagcga
      121 gcaaaacttc tacaggcttc gtcacattat gttctttacg ttgcaaaatg agaatcgatt
      181 tttgtgcacg ttcactttta aataatgttt tcggcaagtt taggaaagct tgcatttctg
      241 tttctgtagc aataaaattt tccaactgtt ttacatagtc gccctcgaac agttgacttg
      301 gtacaacgag gaaagcgtac cctgatggct tcaccgcttc aattgcttgt tcgataaata
      361 agtggtgtgc aaaactgtgc ccctcatcaa aacctaactg tagttgttcg ctacgcgcgt
      421 cattcgggta atacccaatc ggcaaatcac caatgacaac atccgcacca tcaaagggta
      481 acggcataat agcatcttga ggatacacat caaacggaat ttctaaaaaa ttcgcaaggt
      541 gtacactcac tctagaaagg actgggtcaa cctcaactaa atggtgcatg atagtgaagt
      601 ctgacatcac ttcatgaacg gtagcgctta aatggcctgt accgctgcct aaatcggcaa
      661 tatgcagttc tttggtgcct tctttaaatt gcgacactaa aaaccctaaa ataagtccaa
      721 tagaatcggg agtaatttga tgattagctt gaacttcctc tttttgcagt tgattcaaat
      781 acgcaaattg aaatgctttt cttctatctt gaagtgtagc ttgttctaac atatcacgtt
      841 cagaggtata aagttgttcc attgccaagc ctaagttttc aataaagctt tgaccatttt
      901 cttcatttaa attttgtgtt ctttcatcga gttgatggaa caatgtctcc ataatagagg
      961 tgctttctgt catcattcat catcctttca taaaaataag ggagcatttc agaagcacac
     1021 actaaaaaat gtggcttctg aatctccctt tgttcatttc atcagcattc attgattgaa
     1081 cgacatgtca acagagatag ggtatgtcag aaaaaccata cttaaagtag gttgatgctg
     1141 atacagcgaa tctccactca acttggtcat tcaccctcaa ttaaatgttg cgataagctt
     1201 caagtgctgc ttcaaagtta gggaaatccg taccctctgc tacaatctct ttatatacga
     1261 ctttattatt ttcgtctaat acaaatactg aacgtgctaa taattgtaaa ccgtccatca
     1321 tcacaccgta gttttgacca aatgaacgac tttgataatc acttaatgta atcacgttgt
     1381 ctaatccact tgacgcacac catctttgtt gcgcaaatgg taagtccata gaaatcgtta
     1441 atacgtaccc atcttcagta cttgcttctt cattgaactt acgtgtttgt tgatcacata
     1501 cccctgtgtc aagagaagga acaacgttga ctaatttttt cttgccttca tatgttgcca
     1561 gtgtcacagg ctgtaaatta ttgtctacta ctgtgaagtc tggagcttgg tccccaatgt
     1621 taacctcttg acctaataat tcaacagggt tttgtttaaa tgtaatttgt gccatcaata
     1681 gtacctccat taactagatt acttccctat tatatcgtgt taatcagtcg ttatcacgtc
     1741 atataccttc agtttcttta atataatgaa ggtatttatt tttaacgacg actgtatccg
     1801 caaagtaatc atgcacaccg atatgtttag gcgtgaacag tacagctaag tatggcaagc
     1861 cgaaaaaaac atttgaaatg atacggccaa tccattctct cattaagaca tctgaccagt
     1921 tcaatcgcgt taatttccgg tgatacactt taatgccgac aatcatttta ccaactgttt
     1981 gttgaaagta tttcgtcatc aatacaaagt aaccaaaata aataagtaca tcaagcatat
     2041 gacctaagct gaatttatca atccacaatt tccaactatc gatacctgtc agtccataaa
     2101 tagggtttaa aacaatttgt gtcacacccc ataggattgc aaggtcaatg atataactta
     2161 aaaaccgtct gccaaaacct gcatagaaaa atgcatccag ttcatatcga tgtttttcaa
     2221 tcgtttttgt cgcaagtccc tctgcttgat gactattcat tggacgtgac atctcagggc
     2281 ggggttgaga cggattatag ttaaactcat ttgaatgttg catctcaatc acctaccctt
     2341 catatttgta cattggtcgt gtttgtgatt cattattaat aatggatttc acatctttca
     2401 actctgcacg caatccattt atgaatgatt tcatgcctaa aaagctcgtt aaattacttt
     2461 cttcagggtc gaacgtaata atttctgggt tctcaacttt aatcgctttc ttcaagtctt
     2521 ttaaagtctt atctttataa ccgatagcgt caatcaaacc attacttttc gcttgttgtg
     2581 cactataaat acgtccatct gccaattcac gcacttttga ttcggacatt tgacgtccct
     2641 ctttaaccac attgacaaat tgatcaaaac tatctttatt aatagactgt aaaatctctc
     2701 tttcttcatc tgtcatttta cgagaactac ttaaaatatc tttatgtgca cctgatttga
     2761 ttgtgtttgt tttaatgcct aagttgtcca aaagctctga ataatctttt gactcagaaa
     2821 tgacaccaat tgaacctgtt aaagattgag gacccgcata aattttatcg gctggtgctg
     2881 aaatgtagta gcctccagat gccgctaaat tttccatttg gacaaaaatc tttttacctg
     2941 aatctttcac ttcttttatt ttttgataaa attcatcact ttcatatgta ccgccacccg
     3001 gactattaac gctgagtaac acacctttga tagaatcatc atttttaatc gtttcgagtt
     3061 gttttaaagc cgcttgatga ttataacctg tgccaccacc gaacagccca ccgctcgcac
     3121 ctgtatcgat aatttcacct tcaacgacaa tttctgcaat tttcttatta ctatcgcctt
     3181 cttcaagtac agtacttgtc gcttccttat taatgttaaa atccccactc ataagagagg
     3241 atacaactgt tgtcatggca ctcattaaaa taccgcccag tacgatgaca cttgct
//
LOCUS       DANHOL010000189         3291 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.191, whole genome shotgun sequence.
ACCESSION   DANHOL010000189 DANHOL010000000
VERSION     DANHOL010000189.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 3291)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3291)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3291
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.191"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            46..1935
                     /gene="ltaS"
                     /locus_tag="PTC08_002220"
     CDS             46..1935
                     /gene="ltaS"
                     /locus_tag="PTC08_002220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003243930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyglycerol-phosphate lipoteichoic acid
                     synthase LtaS"
                     /protein_id="HDK5683680.1"
                     /translation="MVLTIALKTYFAYYVDLSLGVKGLTQNLILLMNPYSLVALILSV
                     FLFFKGRKAFWFMFVGGFLLTFLLYANVVYFRFFSDFITFSTLNQVSNVDSMGGAVSA
                     SFQWYDFVYFLDLIVYLFVLVFKRKWLSRNVFQKKFVPVVMATAIALFFLNLAFAETD
                     RPELLTRTFDHKYLVKYLGPYNFTVYDGVKTVQNNQQKALASEDDLTEVLNYTKQKQA
                     TPNMEYYGKAKGKNVIKIHLESFQTFLINKKIHGEEVTPFLNKLSSGNEDFRYYPHFY
                     HQTGQGKTSDAEFTMDNSMYGLPQGSAFSLKGDNTFQSLPAIMHQQQGYTTNVMHGDY
                     KTFWNRDQVYRHFGIDKFYDATYFDMSPENLENLGLKDKEFFKEAADYLSKEKQPFYS
                     HLITLTNHYPFTLSDEDATIAKGDTGNSTVDGYIQTARYLDESLEQFINDLKERGLYD
                     DSVIMIYGDHYGISENHNKAMSQLLGEEITPAKFNDLNATGFWLKAPGVEPKVDDTYA
                     GQVDVMPTLLHLLGIDTKNYLMFGTDMLSKDHKEIVPFRNGDFVTRNYKYVNGKAYSN
                     RDNQPLETPPADLDKDKKQVQHDLEMSDKVLNGDLFRFYKNPDFNKLNPADYKYPTGP
                     KANQK"
BASE COUNT         1094 a          593 c          585 g         1019 t
ORIGIN      
        1 gaaaaaggaa aaaagaaaat aggtattttt acgtttttcc tactgatggt tttaacaatc
       61 gcattaaaaa cgtattttgc ttattatgtg gacttatcac ttggcgtgaa aggtttaaca
      121 caaaatttaa ttttattaat gaacccatat agtttagttg cacttatttt aagtgtattc
      181 ttattcttta aaggacgtaa agcgttttgg ttcatgtttg ttggcgggtt tttgctcacc
      241 tttttattat atgccaatgt cgtgtatttc cgctttttct cagatttcat cacatttagt
      301 acattgaacc aagtgagcaa tgtagactcc atgggcggtg cagtgagtgc atcattccaa
      361 tggtacgact ttgtttactt ccttgatctg attgtgtact tatttgtact cgtgttcaaa
      421 cgtaaatggt tgagccgcaa tgtatttcag aaaaagtttg tacccgtcgt catggctaca
      481 gcaatcgcgt tattcttctt gaacttagcg tttgcagaaa cagaccgacc tgaattatta
      541 acgcgtacat ttgaccataa atatcttgtg aaatacttag gaccttacaa ctttacagta
      601 tatgatggtg taaaaacagt acagaacaat caacaaaagg cactcgcttc tgaagatgat
      661 ttaacagaag tattgaatta tacaaaacaa aaacaagcta caccgaatat ggaatactat
      721 ggaaaagcta aaggtaaaaa tgtcattaaa atccatttag aaagcttcca aacattccta
      781 attaataaaa aaattcatgg tgaggaagtg acgccgtttt taaataaatt gtcgtcaggt
      841 aatgaggact ttagatatta cccacatttc tatcaccaaa ctggacaagg taaaacgtca
      901 gacgctgagt tcacaatgga caacagtatg tatggtttac ctcaaggttc ggccttttca
      961 ttaaaaggtg acaatacttt tcaatcttta ccagctatta tgcatcaaca acaaggctat
     1021 acaacaaatg tcatgcacgg tgactataaa acattttgga accgtgacca agtatacaga
     1081 cattttggta tcgataagtt ttatgatgca acatattttg acatgtctcc agaaaactta
     1141 gaaaaccttg gattaaaaga taaagagttt ttcaaagagg cggcggatta cttatctaaa
     1201 gaaaaacaac cgttctattc acatttaatt acgttgacga accattatcc ttttacatta
     1261 agtgatgaag acgcaacgat tgcaaaaggt gacacaggta actcaacggt cgatggttac
     1321 attcaaacag cgcgttactt agatgagtcg ttagaacagt tcattaatga cttgaaagag
     1381 cgtggtctgt acgatgattc agtcattatg atttacggtg accattatgg tatctcagaa
     1441 aatcataaca aagcgatgtc acagttatta ggtgaagaga ttacaccagc gaagtttaat
     1501 gacttgaatg caacgggttt ctggttaaaa gcaccagggg ttgagcctaa agtggacgac
     1561 acgtatgcag gtcaagttga tgtgatgcca acattacttc acttgttagg tattgatacg
     1621 aaaaattatc tcatgtttgg tacagatatg ttatccaagg accataaaga aattgtacca
     1681 ttccgtaatg gtgatttcgt gacgagaaat tataaatatg tcaacggtaa agcctacagt
     1741 aacagagaca atcaaccgtt agaaacaccg ccagcagatc ttgataagga caaaaagcag
     1801 gtacaacatg acttagaaat gagtgataaa gtcttgaatg gagacttatt ccgattctat
     1861 aaaaatcctg atttcaacaa attgaaccca gcagattata aatatccgac aggtccaaag
     1921 gcaaatcaaa aataaaatgt tatgacaggg aagtgtacaa attagtgcat ttccctgttt
     1981 tttaggttgt atatatttgg ttgtgtattt ttaacggttg gtgagagatt tactgcccgt
     2041 ttttaaattt tgaaagacct gtttatttaa atttgaagaa gcatcgtttt tactttaaag
     2101 cttgtcaaca aacctttata actaaaacac cctatattca accccgaagt ctcaaataag
     2161 gtcaaacgct tgatgacgcg gaagctaact aaattcacat ctgaaaaaga tgtcgctaaa
     2221 agtctatgtg tatcaccttc aactgttcat tgccatttaa aagaggtgag taatttgtaa
     2281 agacatacgc acatgatgct ttacctgagc acttagcttt tgacgaattc aaatcaacga
     2341 aagatatcga aggaccaatg agctttattt actgtgatag tgtaacccat gatatcatcg
     2401 acattttacc taatcgttgc aaacattcat caaatatttg ccctgaacct caaatactat
     2461 gcatcatcct catttaacaa atggcccgat tgaaaggatt aataataaaa caaatgtgtg
     2521 tcttatagtt atagaaattt ctggaatctt aatcatttct aagatacttg taagtgcata
     2581 taaaaaacgg aatgggtctt aaaaattttt gatgctattg ttgcaatatt tttattaaac
     2641 ttgtccgcat tacgatttgt ggttttaatt gtcatcatgg tttcgctttc ctagagccgg
     2701 cccttcaact caattcggct tgattgaagc caaattggat tttaggagca gtacagaaac
     2761 ctcatatgca acaagatttc gttgtactgc cttgcatggc tgattagact tctcaaaagt
     2821 gaaaacactg agaagtcagc ccgctactgc gataaacgcc tcccaccatt aaagtaaaga
     2881 ggcgactgtc aacagtatgc acgttccccc tcaggcgtct cagccatctg ggtaatccta
     2941 tatcaataca gcgaaactga gtgcaagatt atgaaatcca gaaaacaatg gcatcatttt
     3001 ttatacacat tcacccctta ttttcgaagg atcaatcatt attaatcgat atcagtctat
     3061 aaatagaagc agagattagg aaaccataat gtctcagtgc cgttattgtc tcaccaaccg
     3121 acgttgacaa agaccccgtc tcaatcgcct ctatcgttgg aaagtatttt agattaaaac
     3181 atttcctttc ataaaaagaa taaacttgtc catatttatc ttggcgttta tatatgaaat
     3241 gcagcatttt catttcgcca ttttcctaca ttttataacc gtcatctaca c
//
LOCUS       DANHOL010000190         3285 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.192, whole genome shotgun sequence.
ACCESSION   DANHOL010000190 DANHOL010000000
VERSION     DANHOL010000190.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 3285)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3285)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3285
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.192"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(69..362)
                     /locus_tag="PTC08_002221"
     CDS             complement(69..362)
                     /locus_tag="PTC08_002221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005551828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase small subunit"
                     /protein_id="HDK5683681.1"
                     /translation="MKLTEKQQMFVDEYIIDLNATQAAIRAGYSEKCARQVGNANMSK
                     VYIQQAIQARSAEKKDNLVMKQDEILERNMSSWRNVMKRRLKSVVIMIKKCLK"
     gene            complement(441..836)
                     /locus_tag="PTC08_002222"
     CDS             complement(441..836)
                     /locus_tag="PTC08_002222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016424815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicB family
                     antitoxin"
                     /protein_id="HDK5683682.1"
                     /translation="MKYHFYAVLQQEGNDYNVYFPDLPGAITFGNDIEHAVFMAQDAL
                     EGHLLVMEDDGDDIPRPSEYKELVNDLEANEQLQLVTVDTKLVRIKEENKTVNKMVTL
                     PKYMVVLGKEKGINFSQTLQRALKEELNI"
     gene            complement(870..1054)
                     /locus_tag="PTC08_002223"
                     /pseudo
     CDS             complement(870..1054)
                     /locus_tag="PTC08_002223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016424814.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicA family
                     toxin"
     gene            complement(1394..1813)
                     /locus_tag="PTC08_002224"
     CDS             complement(1394..1813)
                     /locus_tag="PTC08_002224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000058632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDK5683683.1"
                     /translation="MTLRKSTINYLESELRNYPYLEQDIARVREEILHPWSPPDENVG
                     GGGSTENVSVTEIRATRVVNDRRLAQLTRVKLVIEIVYNHTTDEGRKLMELYYFTKPR
                     TLNLTGVANALHISKTIAYDLRKGILSMLADELGIIH"
     gene            complement(1810..1977)
                     /locus_tag="PTC08_002225"
     CDS             complement(1810..1977)
                     /locus_tag="PTC08_002225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HDK5683684.1"
                     /translation="MIKRTLNLFITLALYELGKFVAERAIVILTANDDVDTFNDYDYP
                     KLINIGAEVSE"
     gene            complement(2013..2162)
                     /locus_tag="PTC08_002226"
     CDS             complement(2013..2162)
                     /locus_tag="PTC08_002226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1381 domain-containing protein"
                     /protein_id="HDK5683685.1"
                     /translation="MAQYLITTFTDSTGQTFTEATKARENQTFTVVGAESKEEALNTH
                     EQDKG"
     gene            complement(2147..2623)
                     /locus_tag="PTC08_002227"
     CDS             complement(2147..2623)
                     /locus_tag="PTC08_002227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDK5683686.1"
                     /translation="MKRILDACCGSRMFWFDKNNRNTVFLDKRQLQTNLCDGRKLEVN
                     PNIVADFRNMPFDDESFYMVVFDPLHLIRGGDKSWLVQKYGRLNETWPEDLKQGFDEC
                     MRVLKPNGTLIFKWNEEQIKLSEVLKCFSQKPLLGNKRSKTHWLVFMKGADEWLNT"
     gene            complement(2978..3130)
                     /locus_tag="PTC08_002228"
     CDS             complement(2978..3130)
                     /locus_tag="PTC08_002228"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683687.1"
                     /translation="MYIFIISGTFSTKYDVKPKLTKYNKIPSYQRFKLRAYLDAGITA
                     SGRVYK"
BASE COUNT          929 a          739 c          467 g         1150 t
ORIGIN      
        1 atgtggcact gtcgtacttc gacaatgggg atgcatcggc ggggcattga caccaggcac
       61 catgtctttc actttaaaca cttttttatc ataatgacga cagattttag acgtcttttc
      121 atcacgtttc gccacgaact catattccgc tcaagtattt catcctgttt cataaccaga
      181 ttgtctttct tttcagccga tcgtgcttga atcgcttgtt gaatgtacac ttttgacata
      241 tttgcattcc caacttgcct cgcgcacttc tcgctataac ctgcacgtat agctgcttgt
      301 gtcgcattta aatctataat gtattcatct acaaacatct gttgtttttc cgttaatttc
      361 atctcatcta tcaccaactc tcacgctaat agctttttta gtcataataa aaagacacca
      421 cgcaatgtga tgcctcaata ttatatattc aactcttctt ttaatgctcg ttgcaacgtc
      481 tgactaaagt taataccttt ctctttacct aacacaacca tgtatttagg caatgtaacc
      541 attttgttta ctgttttatt ttcttctttg attctaacaa gcttagtatc gacagtgact
      601 aattgtaatt gctcgttagc ctctaaatca ttaacaagtt ccttatattc agatggtcta
      661 ggtatatcat caccatcatc ttccatcact aacaaatgac cttctaacgc atcctgcgcc
      721 ataaatacag cgtgttcaat atcattacca aaagttatcg cacctggcaa atctggaaag
      781 tacacgttat agtcgttacc ttcttgttgt agcactgcat aaaaatggta cttcatattc
      841 atccctccaa atcaagaaga tgcaaggggc tataacagcc ctgcttggtt taaaattgag
      901 cgttctgtcc cacgtggtaa atcttttttg gatgcgaaac agtgactttt cctttgcgaa
      961 tcggatgttt aaagtgatga tgactaccaa caacccgcac aaggtaccaa ccatctcgct
     1021 caatcttttt aataacttct tttgatgagc tcatcttgat ttatctccta catatatcat
     1081 aacatatgct catacatatg ttatgggatt aataataaaa gacacactta attggtgcgc
     1141 ctaatgattt tgttttgatg ttttatttga gttgtacact catatcagca cgcctcacgc
     1201 actcatatca atatacaaaa gacgcctcga gggcgcctta accgtctcaa tttaaacata
     1261 taggaggatt aaacatgagt cgaaaagaaa ttattgaaag gatgtcttat gcatttcaac
     1321 cagcactctg tacatttctg tacactatca taatacaacg aaaacccatg ctatttttcc
     1381 ggaaattttc cgttcaatga ataataccta attcgtcagc tagcatagac aatatgcctt
     1441 tacgtaagtc atacgcaata gtcttactaa tgtgtaacgc attagcaacg ccagtcaaat
     1501 tgagcgttcg gggctttgta aaatagtata attccattag cttacgcccc tcatcagtcg
     1561 tatgattata aacaatctca atcactaact taacacgtgt gagttgcgct aagcgtctat
     1621 catttacgac acgcgttgct ctaatctctg tcacgcttac attctcagtt gaacctcctc
     1681 caccgacatt ttcatcagga ggagaccacg gatgcaaaat ttcctctcta actctcgcaa
     1741 tatcttgttc taaatacgga taattgcgta actcactttc taaataatta atagtagact
     1801 ttcttaacgt cattcactca cctccgcacc tatattaatt aacttgggat aatcatagtc
     1861 gttaaatgta tctacatcat cattcgctgt taatataacg attgctcgtt ccgctacaaa
     1921 cttgcctaac tcatatagcg ctaacgtgat aaataaatta agcgttcgtt taatcattct
     1981 gtttcctccc taagcggctt taaaaattct tttcaccctt tatcttgctc atgtgtgttt
     2041 aacgcctctt ccttactctc tgctcccaca actgtaaacg tctgattctc tctagctttt
     2101 gttgcttctg tgaatgtttg acctgttgag tctgtaaatg tagtaattaa gtattgagcc
     2161 attcgtctgc tcctttcata aaaactaacc aatgtgtctt acttcgtttg ttacctaaca
     2221 gcggcttttg actaaaacac tttaaaactt ctgacaattt tatttgttct tcgttccatt
     2281 taaaaattag tgttccgttt ggttttaaca cacgcataca ctcatcaaaa ccttgtttta
     2341 aatcttctgg ccacgtttca ttaagccgac catatttttg tactaaccaa cttttatcgc
     2401 caccccttat caaatgcagt ggatcaaaca caaccatata aaaactttca tcatcaaatg
     2461 gcatatttct aaaatcggcc actatgttcg gattaacttc taactttcga ccgtcgcaca
     2521 aattcgtttg tagttgacgt ttatccaaaa aaactgtatt tcggttattc ttatcaaacc
     2581 aaaacattcg actaccacaa caagcgtcta aaatacgttt catttaatct tcctccatca
     2641 catcgaacaa tagcttgaac gtcatctcat ttaatgcata aaagttacta tcgtgacctt
     2701 ttattacata gtcaccaagt ttagcaactt ctgtacaacc attgttaaaa aattctaatt
     2761 gatactccca atcaacaaac gctatagaaa aacgtgcttt gttattagcc cattttttta
     2821 ttttttcacc gatttcggta tcgacatatt gaataaactc aaattcttct tgtctagatt
     2881 tggctttttt atattcactt acgcagcacc tctttccctt tctgtaatat gtctttagat
     2941 tcctgatgat ccaaaccctt tttctcctct tgctgactca cttgtaaact cttccacttg
     3001 ctgtaattcc agcgtctaga taggcacgta acttaaaacg ttgatatgac ggtattttgt
     3061 tgtatttcgt taactttggt ttaacgtcgt attttgtgct aaacgtccct gaaattataa
     3121 aaatatacaa aaaaacaccc acctattgca ggcggggtta atttattcat tttctttttc
     3181 tagttgtttt tggtagttgt atagtttttc ggcgttttta agtgttagat tatcgataga
     3241 ccgttcacct cgacgcattg cattaatatt tccgtaactt acgcc
//
LOCUS       DANHOL010000191         3282 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.193, whole genome shotgun sequence.
ACCESSION   DANHOL010000191 DANHOL010000000
VERSION     DANHOL010000191.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 3282)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3282)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3282
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.193"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(255..611)
                     /locus_tag="PTC08_002229"
     CDS             complement(255..611)
                     /locus_tag="PTC08_002229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HDK5683688.1"
                     /translation="MNNINHFQAVGIINRPPSFYEKEESYFVTFTVAVTREYLSKKQK
                     PITDYLNCKAFGNIALQIHETIQEGITVAISGQIQTRRYVHNDEKRYATELLVSQISP
                     IGAVTIESNTDEFNDE"
     gene            792..1226
                     /locus_tag="PTC08_002230"
     CDS             792..1226
                     /locus_tag="PTC08_002230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YwpF-like family protein"
                     /protein_id="HDK5683689.1"
                     /translation="MKTFKAVRFQIVSENSSVAEYELLDGVIINKENSGTGWVLEIVI
                     SDIHQEQMQAYMEAETLLDIRVVITRPSNDPALFDATIKHITPLNGSISVVFECHIYT
                     LRQVYAENLLEQLVNEGMQGQELITTFNRMMKSKPRLKDERQ"
     gene            complement(1342..1785)
                     /gene="fabZ"
                     /locus_tag="PTC08_002231"
     CDS             complement(1342..1785)
                     /gene="fabZ"
                     /locus_tag="PTC08_002231"
                     /EC_number="4.2.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016426460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-ACP dehydratase FabZ"
                     /protein_id="HDK5683690.1"
                     /translation="METIFNYNEIKNIIPHRQPFLLIDKVVEYEPGQRCVGIKQVSGN
                     EPFFQGHFPDYAVMPGVLITEALAQTGAVAMLNSEENKGKLALFAGIDKCRFKKQVVP
                     GDTLVLEVEITKIKGPIGKGTAKATVDGQIACSCELTFALQDPNA"
     gene            complement(1785..1994)
                     /locus_tag="PTC08_002232"
     CDS             complement(1785..1994)
                     /locus_tag="PTC08_002232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020220231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HDK5683691.1"
                     /translation="MKELMTKWRYGLQTLMDSTSFKLTLFVFIAIMMFVVGLMTGFII
                     NHDNVLNTFNLRFWQHIIETIGGHH"
     gene            complement(1975..3240)
                     /gene="murA"
                     /locus_tag="PTC08_002233"
     CDS             complement(1975..3240)
                     /gene="murA"
                     /locus_tag="PTC08_002233"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HDK5683692.1"
                     /translation="MDRIIVKGGNTLKGEVGVEGAKNAVLPILTASLLASDGKSELVN
                     VPALSDVETINNVLSVLNAKIKYNEKQQSVTVDASKDLSEEAPYEYVSKMRASILVMG
                     PLLARLGRAKVALPGGCAIGSRPIEQHLKGLEALGAEIHQEAGYIYAEAPQGLVGNEI
                     HFDFPSVGATQNIMMAASLAKGRTVIENVAREPEIVDLANYINEMGGDIKGAGTDTVI
                     INGVESLKGVKHAIIPDRIEAGTLMIAAAITRGDVLVKGAIKEHMTSLVYKLEEMGVE
                     LDYTEEGIRVTAPKKLQPVDIKTLPHPGFPTDMQSQMMALLLTAEGHKVVTETVFENR
                     FMHVAEFKRMNAQISVEGRSAKIEGKSALQGAQVKATDLRAAAALILAGLVADGETIV
                     TELKHLDRGYVDFHGKLKSLGANIERIND"
BASE COUNT          981 a          668 c          559 g         1074 t
ORIGIN      
        1 ataaaagtgg tgattggcca ctaaatacat gcacgtattt aatagccaat acacctcatt
       61 ttaaggttga tagatagaca atttaggtag caggttatat accaaatatc actagagctc
      121 aagtcaatat gttgaagata aaagtaatgg tgtgagataa atcgaattat ttcaatcgga
      181 gtatatactt tgagaagggt taataaaaat aggtgggatg atcaaatatt ggaaaatctt
      241 tgcttgttgc tttgctattc atcgttgaac tcatctgtat ttgactctat cgttactgca
      301 ccaattggag agatttgtga aacgagtaat tctgtagcat aacgtttttc atcattatga
      361 acataacgtc tagtttggat ttgcccgctt atggctacag ttatcccctc ttggatcgtt
      421 tcgtgaattt gaagagcaat gttaccgaac gctttacaat ttaagtaatc agtgatgggc
      481 ttttgttttt tacttaaata ctctcgcgtg acagcaacgg taaaggtaac aaagtaactc
      541 tcttcttttt cgtaaaaact gggcgggcgg ttaatgatac ctactgcttg aaaatggtta
      601 atgttgttca cctcctgtac ccgtaatata aacgtttcat tgtgaaatgg caaaatgcaa
      661 attcatataa aattaaagta tgtatcgagg tatatttaag ccttatcgag aattatttta
      721 aaaattgcgt tataatgaaa agtaccatag aaatttcgta aagtttttta aatgatatgg
      781 aggtggctcc aatgaagacg tttaaagctg ttcgttttca aatcgtttct gaaaatagta
      841 gcgtggctga atatgaactc ctagacggtg taattattaa taaagagaat agcggtacgg
      901 gttgggtgtt agaaatcgtt atttcagata tacatcaaga acagatgcaa gcgtacatgg
      961 aggcagaaac acttttagat attcgtgttg tcattacgcg accgtctaat gatcctgcac
     1021 tatttgatgc aacaatcaag catattacac ctttaaatgg cagcatttca gttgtatttg
     1081 aatgtcatat ttatacattg cgacaagttt atgcggaaaa tttactcgag caattggtca
     1141 atgaaggcat gcaaggtcaa gagctcatca caacgttcaa tcgcatgatg aaatctaaac
     1201 cacgccttaa agacgaacga caataagata tgagacttac atacatgtac tatgttcaaa
     1261 ttgaatcgtg aaaatgattt acaaagcaac ccataaaaaa acacctcatt atgaagacga
     1321 ggtggttttt ttatatttga tttatgcgtt tggatcttgt aatgcaaaag tcaattcaca
     1381 actacatgca atttgaccat caacagttgc ttttgcagta cctttaccaa tcggcccctt
     1441 gatttttgta atttcaactt ctaacactaa agtatcgcca ggcaccactt gctttttaaa
     1501 tcgacattta tcaattcctg caaataaagc gagctttcct ttgttttctt cactatttaa
     1561 cattgctact gcacccgttt gagccaacgc ttcagtaatt aaaacgcccg gcataaccgc
     1621 ataatctgga aaatgtcctt ggaaaaacgg ttcattacca gagacttgtt taatgcctac
     1681 acaacgctga cctggttcgt attcaaccac tttatcaatc aataaaaatg gttgtctgtg
     1741 cgggatgatg ttttttattt cattataatt aaagattgtt tccattagtg atgtcctcca
     1801 attgtttcga tgatatgttg ccaaaacctt aaattaaatg tattcaacac gttatcatgg
     1861 ttgataataa agcctgtcat taaaccgact acaaacatca tgattgcgat aaaaacaaat
     1921 aaagttaatt taaaactggt tgaatccatt aatgtttgta gcccatatct ccatttagtc
     1981 attaattctt tcaatattgg cacctaaaga tttaagcttt ccatgaaagt caacataacc
     2041 acggtcaagg tgttttaact cagtgacaat cgtttcacca tcagctacaa gtccagctaa
     2101 aattaatgct gcggcagcac gtaaatcggt cgctttcact tgtgcccctt gcaacgcact
     2161 tttcccttcg attttagcgc tacgaccttc aactgaaatt tgtgcgttca tacgtttgaa
     2221 ttccgccaca tgcataaaac ggttttcaaa tacggtttca gtcaccactt tatgcccttc
     2281 tgctgtgagg agtaacgcca tcatttggga ctgcatatct gttgggaaac caggatgtgg
     2341 caatgtttta atatcgacag gctgtaattt tttcggtgca gtcactcgaa tgccctcttc
     2401 tgtataatct aattcgacac ccatttcttc taatttatat acgagacttg tcatgtgctc
     2461 tttaatcgca cctttgacga gcacatcacc gcgtgtaatg gcagctgcga tcatcaatgt
     2521 accggcttca atacggtcag gaatgatagc atgcttcacc ccttttaatg attcaacacc
     2581 attaatgatt acggtatcgg taccggcacc tttgatatcg ccgcccattt cattgatata
     2641 gttcgctaaa tccacaattt ctggctctct cgcaacattt tcaatcactg tacgcccttt
     2701 tgctaacgaa gctgccatca tgatgttctg tgttgcaccg acacttggaa agtcgaaatg
     2761 aatttcatta ccaactagtc cttgaggtgc ctctgcgtaa atatatcctg cttcttgatg
     2821 aatttcagca ccaagcgctt ctaatccttt caaatgttgt tcaatcggac gtgaaccaat
     2881 cgcacatcct cctggtaatg cgactttagc tcgtcctaaa cgcgccaata acggccccat
     2941 aactaaaata ctcgctctca tcttactcac atattcatat ggcgcttctt cacttaaatc
     3001 tttcgacgca tcaacagtta ctgattgttg tttttcgtta tatttaattt ttgcatttaa
     3061 tacgctcaat acattattaa tagtttccac atcacttaac gccggaacgt tgacaagttc
     3121 acttttacca tcacttgcta acaaagacgc tgtaagaatc ggcaaaactg catttttcgc
     3181 tccttctact ccgacttcac ctttaagtgt atttccacct ttaacaataa ttctatccat
     3241 cttattaatc ctccactatg cttacagctc tattctattt tt
//
LOCUS       DANHOL010000192         3271 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.194, whole genome shotgun sequence.
ACCESSION   DANHOL010000192 DANHOL010000000
VERSION     DANHOL010000192.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 3271)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3271)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3271
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.194"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            71..313
                     /locus_tag="PTC08_002234"
     CDS             71..313
                     /locus_tag="PTC08_002234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002500260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HDK5683693.1"
                     /translation="MSNETILTLKQWRNLRELSQKELAIKADVTERSIANYEKDVKNL
                     QNAKYATVKRLADALDVKVDNIFLSDTSEKPKILIS"
     gene            330..563
                     /locus_tag="PTC08_002235"
     CDS             330..563
                     /locus_tag="PTC08_002235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002485855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2829 domain-containing protein"
                     /protein_id="HDK5683694.1"
                     /translation="MNIQEATKLAMKKGKSIYRKDLRNKGLRGEILPTNDLYHGMLYT
                     IPDKKSYKQGWQPLAEDLISDEWFVTGEELSSH"
     gene            complement(549..884)
                     /locus_tag="PTC08_002236"
     CDS             complement(549..884)
                     /locus_tag="PTC08_002236"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683695.1"
                     /translation="MLTNEANFVLHHFYKIYKDRLDEGYSEEMARYFYDDEQVHHDYF
                     LGFNFDDFVAYTKELSSNEYVTLGYGDGGFAELIINPKLIIEMENLYKNNAKKFINAF
                     IDLKKLVGT"
     gene            951..1178
                     /locus_tag="PTC08_002237"
     CDS             951..1178
                     /locus_tag="PTC08_002237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF771 domain-containing protein"
                     /protein_id="HDK5683696.1"
                     /translation="MATKTYWYMDDLIQEVGRGRKWIKDNILNIPKFKKEIEEFAHYP
                     INNNDEYIFVGSKMKNWLEDNFKEIERLKYM"
     gene            1192..1368
                     /locus_tag="PTC08_002238"
     CDS             1192..1368
                     /locus_tag="PTC08_002238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683697.1"
                     /translation="MKHTLAIFMTVAVAIVLTTVLAFAGVYFTTLLFIVILAEAVTYN
                     GTKAIYEVLKKTEC"
     gene            1449..1709
                     /locus_tag="PTC08_002239"
     CDS             1449..1709
                     /locus_tag="PTC08_002239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1108 family protein"
                     /protein_id="HDK5683698.1"
                     /translation="MYFPNGEEFSGIIEVEGFKFRKHVTRQDDYILIEITDMTYKIIA
                     ETKVSDISDVDIAQEVISAALYDYIEYQTDDLDKIMAQLIKN"
     gene            1721..1936
                     /locus_tag="PTC08_002240"
     CDS             1721..1936
                     /locus_tag="PTC08_002240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683699.1"
                     /translation="MENEKMLITLERYDQLIAERAVYKNEAQRLEDENIELKAQIKDL
                     EEENNKIPLIHFNTSKTTDEEEVLIVD"
     gene            1929..2414
                     /locus_tag="PTC08_002241"
     CDS             1929..2414
                     /locus_tag="PTC08_002241"
                     /inference="COORDINATES: protein motif:HMM:NF017386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="siphovirus Gp157 family protein"
                     /protein_id="HDK5683700.1"
                     /translation="MTNLFDLNQNELAILEMLENEELSFDDVKDTLDAIQDEQKRKYD
                     AMQKMILSLKGDVNTLKEREKALSKRRKSYENKIKSLQNYMLDSMRFKGETKFKTEEF
                     TYFIRKSETTQIEDENVIPEKYKVEQAPKIDKTQIKKDIKAGIEVAGASLVENESLGV
                     R"
     gene            2414..3109
                     /locus_tag="PTC08_002242"
     CDS             2414..3109
                     /locus_tag="PTC08_002242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDK5683701.1"
                     /translation="MSFNISSAKDITTDKSTYLIYGKPGSGKTHTLNFLPGKTLYVNV
                     DKSERPLKGNENVDILNFNSHEAWQEWGDLMKWFAENKQTLNNYDTIVIDNLSELFRS
                     MLANLGRAGKNNRVPEMSHYQRVDFFTIDSLRFLQSLGKRLVFLAWETNYDFYTPAGQ
                     QITQSVPDIRKTIRDNVAGLCQVVARLIVNKESGKRGFILMPTNNVFAKNQLDDREHC
                     LQDELFNVGDVDG"
BASE COUNT         1260 a          524 c          623 g          864 t
ORIGIN      
        1 aaaatagttc ttgacttcgg aaaaaccgaa atgttatgat gtaattaact tcaaaaaagg
       61 aggttatcac atgagtaacg aaacgatact tactttgaag caatggcgta acttgcgaga
      121 attatctcaa aaagagttag ctattaaagc tgatgtaaca gaaagaagta tcgctaatta
      181 tgaaaaagat gttaaaaact tgcaaaacgc taagtatgca acagtaaaaa ggcttgcgga
      241 tgcattagat gttaaagtgg ataatatttt tttgagcgat acttcggaaa aaccgaaaat
      301 tttaattagt taggttaaag gaggacacta tgaacattca agaggcaact aaattagcaa
      361 tgaaaaaagg caaatctatt tatagaaaag atttaagaaa taaagggtta aggggagaaa
      421 tcttgcctac aaacgaccta tatcacggca tgctgtacac cattccagat aagaagtcct
      481 ataagcaagg atggcaaccg ttggcagagg acttaatatc tgatgaatgg tttgtgacag
      541 gagaggaatt aagttcccac tagttttttt aaatctataa aagcgtttat gaatttctta
      601 gcattatttt tatataaatt ttccatttca ataattaatt ttggattgat tattagttca
      661 gcgaacccac catcgccata tccaagtgta acgtattcat ttgaagaaag ctcttttgtg
      721 taagccacaa agtcgtcaaa attaaaacct aaaaaataat catgatgtac ttgttcatca
      781 tcataaaaat aacgagccat ttcttcagaa tacccttcat ctaaacggtc tttatatatc
      841 ttataaaaat gatgtaaaac aaaatttgct tcgttagtga gcatacttct cacctccttt
      901 caataggaga taagaaaagt atagcacaac aaaataaggg ggtggctaac atggctacaa
      961 aaacatattg gtacatggac gacctcatac aagaggttgg aagaggtcgg aagtggatta
     1021 aagacaacat cttaaacatt cctaaattta aaaaggaaat tgaagaattt gcgcactatc
     1081 ctatcaacaa caacgacgaa tacattttcg ttggtagtaa aatgaaaaac tggcttgaag
     1141 ataatttcaa agaaatcgag cgtctcaaat atatgtaagg aggtgactaa attgaaacac
     1201 acattagcaa tatttatgac tgtcgcagtt gctatcgtac taacgaccgt tctagctttt
     1261 gcaggcgtgt acttcaccac actgctattc atcgtaatcc tagcagaagc ggtgacgtac
     1321 aacggcacaa aagcgattta cgaagtatta aaaaagactg agtgctaatg gcagttagca
     1381 aacagtcgaa acagttcaga aaatatttac agactaatta tatcacaaat cttaggagga
     1441 attgaaaaat gtatttcccg aacggcgaag aattttcagg aatcatcgaa gttgaaggct
     1501 tcaaattccg taaacacgtt actagacaag atgattacat cttgattgaa atcactgaca
     1561 tgacatacaa aatcatcgca gaaacgaaag tgtccgatat ttcagatgta gatattgcac
     1621 aagaggttat cagtgcagcg ttgtatgact acatcgaata ccaaacagac gacttagaca
     1681 aaatcatggc acaactcatt aaaaactagg aggaaacatc atggaaaacg aaaaaatgtt
     1741 aatcacatta gaaagatacg accaactcat cgcagaaaga gcggtttaca aaaatgaagc
     1801 ccaacgttta gaagatgaaa atatcgagct taaagctcaa attaaggatt tggaagaaga
     1861 gaataataaa attccattga ttcatttcaa cacatcaaaa actactgatg aagaggaggt
     1921 gttaatcgtt gactaactta ttcgatctaa atcaaaacga gctcgctatt ttagaaatgc
     1981 ttgaaaatga agaattaagt tttgatgatg tgaaagacac attagacgcc attcaagatg
     2041 agcaaaaacg taaatatgac gctatgcaaa agatgattct ttcattaaaa ggtgatgtga
     2101 acacgttaaa agagcgtgag aaggcgctta gtaaacgtcg taaatcgtac gaaaacaaaa
     2161 tcaaatcact tcaaaattac atgttggatt cgatgagatt taaaggtgaa acgaaattca
     2221 agactgaaga atttacctac tttataagaa aatcagaaac tacgcaaatt gaagatgaga
     2281 atgtaatacc tgaaaaatac aaagtagaac aagcacctaa aatcgataaa acgcaaatta
     2341 agaaagacat caaagcagga attgaagttg caggtgcctc actcgtcgaa aacgaaagct
     2401 taggggtgag atgatgtcat tcaacatatc aagcgctaaa gacattacta cagataaatc
     2461 aacgtattta atctacggaa aacctggaag cggtaaaacg cacacactta actttctgcc
     2521 tggtaaaacg ttatacgtga atgtggataa atcagaacgg ccactaaaag gcaatgaaaa
     2581 cgttgatatt ttaaatttca attctcatga agcatggcaa gagtggggcg accttatgaa
     2641 gtggtttgca gagaataaac agacgctaaa caattacgac actatcgtga ttgataattt
     2701 atcagaactg tttagatcta tgctcgcaaa tctcggacga gcaggaaaaa acaacagagt
     2761 acccgaaatg tctcattatc aacgtgtcga tttcttcacg attgatagtt tgcgattttt
     2821 acagtcgtta ggaaaaagac tagtgtttct agcgtgggaa acaaattacg acttctatac
     2881 gcctgcaggt caacaaatca cacaatctgt accggacatt agaaaaacga tacgtgacaa
     2941 tgtggcaggt ctatgtcaag tcgttgcacg actcattgtt aataaagagt cgggcaaacg
     3001 tggttttatc cttatgccga caaataacgt ttttgcgaag aatcaactcg atgatagaga
     3061 gcattgtttg caagatgagt tgtttaatgt gggggatgta gatggttaaa agtatttatt
     3121 tgcaagatgg agaagaaata tttgtagatg atgaagatta tgagagagtg aatcagttta
     3181 catggcataa agtttaccaa aaaaacaaaa caagaattat ccaaaactct aaacacattt
     3241 ctctacagtc ttacattaac aaaaaaaagg a
//
LOCUS       DANHOL010000193         3244 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.195, whole genome shotgun sequence.
ACCESSION   DANHOL010000193 DANHOL010000000
VERSION     DANHOL010000193.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 3244)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3244)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3244
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.195"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(132..434)
                     /locus_tag="PTC08_002243"
     CDS             complement(132..434)
                     /locus_tag="PTC08_002243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683702.1"
                     /translation="MIKVREDLFNRSRIKNYENTMIDVKERYSNLPSYSLRVKGITHT
                     KVHAVKQIGLYDNIDDVITDALEALIQSYNEEDAKKISDYELEFNEIKLKKANLKK"
     gene            complement(427..1317)
                     /locus_tag="PTC08_002244"
     CDS             complement(427..1317)
                     /locus_tag="PTC08_002244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012655895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HDK5683703.1"
                     /translation="MTKVISINNFKGGVSKTSTTAGIAYVLSKVKKKSVLVVDLDPQA
                     DLTDLLLKSFNRSETNLLTEVLDSHDETLIDEKEDAILDALLSKSNTYNEKDLFHTLK
                     DGSSLKQCLIELNDQLSLIPSDFNMIGFPYLLEDLGLNRVDGSRYFDSFLQEIKHNYD
                     YILIDTPPTLSDFANNAIYACDYSLIVVQTHVRSFNAVEKLISHLGTFRDLHRNNFAI
                     AGILPVMFKNKGKIDTFIMKVLDRVYKDNVFKNKVFQRERVKYWDVNGIKNEDMHDKN
                     ALNMYVNITDELIEKVEGDD"
     gene            1527..2209
                     /locus_tag="PTC08_002245"
                     /pseudo
     CDS             1527..2209
                     /locus_tag="PTC08_002245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001568503.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
BASE COUNT         1179 a          439 c          498 g         1128 t
ORIGIN      
        1 aacaaagtat ccatgataaa gaaacagtag agctaatgcg gaagtttata gaattgttaa
       61 aaccttatcg aatattaaaa gatgagaaag agaaatagtg taacaacata agtgttatta
      121 cacttgtgtt gttacttttt taagttagct ttttttagtt ttatttcatt aaattcaagt
      181 tcataatctg aaattttttt agcatcttct tcattatatg attgaattaa tgcttctaaa
      241 gcatcagtaa tcacatcatc tatattgtca taaagtccta tctgcttaac cgcatgtact
      301 ttggtatgtg tgataccttt aactcgtaaa ctatatgatg gtaaattact atatctttct
      361 tttacgtcta tcattgtatt ttcataattt ttaatcctgc tcctattgaa taaatcttct
      421 ctcaccttaa tcatctcctt ctactttttc aataagttca tcggtaatat tgacatacat
      481 attaagtgca tttttatcat gcatatcttc attttttata ccgtttacgt cccaatattt
      541 aacacgctca cgctggaaca ctttattttt aaaaacatta tctttataaa cccggtctaa
      601 aactttcatt ataaaagtgt ctatttttcc tttgtttttg aacataacag gtaatatccc
      661 tgcaattgcg aagttatttc tatgtagatc tcgaaatgta cctaaatggc taattaattt
      721 ttctacagca ttaaaacttc ttacatgtgt ttgtacaacg ataagactat aatcacaagc
      781 atatatagca ttattagcaa aatctgaaag cgtcggtggc gtgtctatta agatgtagtc
      841 ataattatgt ttaatttctt gtagaaacga atcaaagtat cttgaaccat ctactctatt
      901 taaacccaaa tcttccagca agtatggaaa accaatcata ttaaaatctg atgggattag
      961 tgaaagttga tcattaagtt caattaaaca ttgcttaagc gaactaccat cttttaaagt
     1021 atgaaataaa tctttctcat tgtaagtatt tgatttgctt aaaagcgcat ctaaaattgc
     1081 atcttctttc tcatcaatca atgtttcatc atgcgaatcc aatacttcgg ttaataagtt
     1141 agtttcagac ctattgaaag acttcaataa taaatctgtt aagtcagctt gaggatctaa
     1201 atccacaact aaaacgcttt tctttttaac ttttgaaaga acatatgcaa taccagcagt
     1261 agttgaagtt ttagacactc ctcccttaaa gttattgata gatataactt tagtcataca
     1321 aatgtctcct ttcatattca atgtaaattt agcatagatt ttaatttaac acaagtataa
     1381 taacacatgt gttattatac aaatattatc acacttatgt tgattactct tttattaaaa
     1441 ctaattttgt aacaagatac tttaaacata ctgatgaagg atatttaatg ttatataata
     1501 catggttttg taattggagg agtaccatga agaatagtta tcaagcacaa aatgtgattg
     1561 aagaagtaat taaagaaaaa ctaaaagtcc tattgatggt gaaactttag agcaaagttt
     1621 aaaacacatg tctaaggctt ttaataaatt aaaaatgtat acaaaggtta aaaagaattt
     1681 aattggattt atgcgttcaa cagaagtaac cgttaataaa aatgatggta gttataatca
     1741 acatatgcat gttttattat gtgttgaaag tgcctatttt aaaaagcaag gtcaatatat
     1801 aaatcaaagt gaatgggtcg atttatggca aaaagcacta caagttgatt acaaacctgt
     1861 cgcaaatatt aaagcgatca aaccgaatca aaaaggcgat aaagatattc aagcagcaat
     1921 caaagagaca tcaaaatact ctgtaaaatc atcggattat ttaacaggtg atgaagaaaa
     1981 agacgcagaa attgttagtg atttagaaca aggtttatat cgaaaacgta tgttaagtta
     2041 tggtggatta cttaaaaaga aacataaaat tttaaactta gatgatgccg aagatggcaa
     2101 tttaattaat acaagtgatg aaaataaaac aacagacgaa gaagaaaaag catattcaat
     2161 tactgcaatt tggaatttcg aaaagcaaaa ttattattta aaacgctagt tttactagcg
     2221 ttactttttt gtgatttttt atgaaaaaag tggtgtgaca aaggtgtgac gttttacgta
     2281 tattgtgtca cacttctgtg acaagcccaa tatattgtgt cacaaaggtg tgacacattg
     2341 aaaattttga tagcacttga aaaatggctg aaagacttgg aatgtctggc tttgccagac
     2401 ctatcaattt taattgatag catattctcc ttatgctctt aactgagatt tgaagcaaat
     2461 ccaaaatttt aggttttgtt attgttgagg agttgaaaaa aacttcttat ttggctcata
     2521 tttgcgtttt aagaaacaaa aatgatttta caggtaaaaa ctatatattt taaaaagatg
     2581 ctctatatac ccccttaaaa tgcaaaataa ggttattgga ttatcacacg caaattttgg
     2641 ttttagtacg atgccatttt taatggtgtg taagtgcgcc cttggacaat gaaaaataaa
     2701 aaatcttaat taaacagagt ttaactaaga tagtcacgaa ttttagtgtg tttaaaaatc
     2761 tgtattattt cagatgtttg gaattaaggt attgaatatg gtgtgaatga aagtaaagga
     2821 taataattac ttattcaatg catgattagg tttttattca aggcatagtt acatacataa
     2881 tttaagcgcg catttatgcc gagaaaattt attgatgttg agaagaaccc ttaactaaac
     2941 ttgcagacga atgtcggtat agcgtgagct attaagccga ccatttggca agttttggga
     3001 ttgttaaggg tttcgaggct caacgtcaat aaagcaattg gaataaatgt attttgattt
     3061 tatctaaaaa tatcttaaaa aatcatttac ttatcaataa atatctgtta tgataatttt
     3121 agatgaaaag gagatgtttc tatatgaaat ctgaaaagta ttatgaatta ttaggaagaa
     3181 tcaatgagct tgaaagaaga ttaaacacct tagaattaaa attttatgat gatattaagg
     3241 agga
//
LOCUS       DANHOL010000194         3238 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.196, whole genome shotgun sequence.
ACCESSION   DANHOL010000194 DANHOL010000000
VERSION     DANHOL010000194.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 3238)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3238)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3238
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.196"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            68..1558
                     /locus_tag="PTC08_002246"
     CDS             68..1558
                     /locus_tag="PTC08_002246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catalase"
                     /protein_id="HDK5683704.1"
                     /translation="MNRDESKLTGLFGHPVSDRENSMTAGPRGPLLMQDWYFLEQMAH
                     FDREVIPERRMHAKGSGAFGTFTVTNDITKYTNAKIFSEVGKKTEMFARFSTVAGERG
                     AADAERDIRGFALKFYTEDGNWDLVGNNTPVFFFRDPKLFASLNHAVKRDPRTNMRSA
                     QNNWDFWTSLPEALHQVTILMTDRGIPKGYRHMHGFGSHTYGMINANNERVWVKFHFR
                     TQQGIENLQPDEAAAIIANDRESSQRDLYNAIEEGDFPKWKMYIQVMTEEQAKNHKDN
                     PFDLTKVWYKGEYPLIEVGEFELNRNPENYFMDVEQAAFAPTNIIPGLDFSPDKMLQG
                     RLFSYGDAQRYRLGVNHWQIPVNQPKGVGVENICPFSRDGAMRFLDGNQGGQTHYYPN
                     SYGAHQSQPEYKRPPLEIEGGAYEYDFREDDDNYFEQPGKLFRLQSPEQQQRIFQNTA
                     NEMQGTTDEVKRRHIKNCYQADVNYGTGVAKALGMEDQLASIIAEI"
     gene            1774..2097
                     /locus_tag="PTC08_002247"
     CDS             1774..2097
                     /locus_tag="PTC08_002247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683705.1"
                     /translation="MILDRINPDDLFPTEHIETSVLGIMPYQMKDMTKRFEAAYVATN
                     ERLILNVDMDGQFYYRNIQFSEIKGIKTIDNALEITFDYGVFTLEESDADKVKAMSEY
                     LHSKI"
     gene            2219..2665
                     /locus_tag="PTC08_002248"
     CDS             2219..2665
                     /locus_tag="PTC08_002248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA starvation/stationary phase protection
                     protein"
                     /protein_id="HDK5683706.1"
                     /translation="MAQGREQVVEDLNLQLSNFTVLWTKIHNYHWYVKGHNFFALHEK
                     FEELYNKVAVYVDEIAERALALEGNPVGTMKEVLEVSSIEEAEKNISAEQMVAQLATD
                     FETVVKELKQAQGNAEDAGDDRSADMFIEIATELEHNIWMLKAYIG"
BASE COUNT         1122 a          556 c          648 g          912 t
ORIGIN      
        1 actttgtaat tagtttaaac taatggtata ctaaattaaa ataattctaa tctagaggtg
       61 tgaatatatg aacagagatg aatcaaaatt aacgggctta tttggccatc ctgtcagtga
      121 ccgtgaaaac tcgatgactg cgggtccacg tggtccttta ttgatgcaag actggtactt
      181 tttagaacaa atggcacact ttgatcgtga ggttattcct gagcgtcgta tgcatgcgaa
      241 aggttcaggt gcgttcggta cttttactgt aacaaatgac attacaaaat atacaaacgc
      301 gaaaatcttt tcagaagtag gtaaaaaaac tgaaatgttc gcacgttttt ctacagtagc
      361 tggtgaacgt ggagcagcag atgcagaacg tgacatccgt ggtttcgcat tgaaattcta
      421 cactgaagat gggaactggg atcttgtagg taataacaca ccagtattct tcttccgtga
      481 tccaaaatta ttcgcaagct taaaccatgc tgttaaacgt gacccacgta ctaacatgag
      541 aagcgcccaa aataactggg atttctggac atcattacct gaagccttac atcaagtcac
      601 tatcttaatg acagaccgtg gtattccgaa aggttacaga catatgcacg gcttcggctc
      661 acatacttat ggtatgatta atgctaataa tgaacgtgtt tgggtcaaat tccacttcag
      721 aacacaacaa ggtatcgaaa acttacaacc tgatgaagcg gcagcaataa tcgcaaatga
      781 ccgtgaatct tcacaacgtg acttgtacaa tgccattgag gaaggtgact tccctaaatg
      841 gaaaatgtac attcaagtca tgactgaaga acaagcgaaa aaccataaag acaacccatt
      901 tgacctaaca aaagtatggt acaaaggaga gtatccttta attgaagtag gagaattcga
      961 attaaatcgt aaccctgaaa actacttcat ggatgttgag caagcagcat tcgcaccgac
     1021 aaacattatt cctggtttag atttctcacc agataaaatg ttacaaggtc gtttattctc
     1081 ttatggcgat gcacaacgat atcgtctagg tgtaaaccac tggcaaattc cagttaacca
     1141 accaaaaggc gttggtgtag aaaatatttg cccattcagc cgtgacggtg caatgcgttt
     1201 cttagatggt aaccaaggtg gccaaacaca ctattatcca aatagttatg gtgcacacca
     1261 aagccaacca gaatacaaac gtccaccact agaaatagag ggcggggcgt atgagtatga
     1321 tttcagagaa gacgatgaca actacttcga acaaccaggt aaattgttcc gactacaatc
     1381 acctgaacaa caacaacgta tcttccaaaa tactgcaaat gaaatgcaag gaacaactga
     1441 tgaagtaaaa cgccgtcata tcaaaaactg ttaccaagct gacgtaaact acggtacagg
     1501 tgtggccaaa gcattaggta tggaagatca attagcaagt attatcgctg aaatctaatg
     1561 tcgacccatt aatcaataat taaataatca agctgtgatc acccttacag ctcccgttta
     1621 acacacggta tcattaaagg cgattgattt gatagcgcgc acatactgca tcttgaagac
     1681 gatcgccttt gatgcgccgt atatgatcca ctgtctcaca cacggtaaat catatgcgcg
     1741 attgttaaat ttaaaattcg agaggttttt gaaatgatat tagatagaat caacccagac
     1801 gacttatttc caacagaaca tattgaaacg tctgtattag ggatcatgcc ttatcaaatg
     1861 aaagacatga caaaacgttt tgaagcagca tatgttgcga caaatgaacg tctgatttta
     1921 aatgtggata tggatggtca attttattac cgaaatatcc aatttagtga aatcaaagga
     1981 attaaaacga tagataatgc gttggaaatc acatttgact acggcgtatt cacgttagaa
     2041 gagagtgacg ctgacaaagt gaaagcgatg tcggagtatt tacactctaa aatctaaatg
     2101 tgaagaacac atgaacattt cgctgttcgt gtttgagtac aacctatatc ggttaaaata
     2161 tacatgtata attcagtaaa aatataaatg aatggaagct agaaaggtga gattataaat
     2221 ggctcaaggc agagaacaag tcgttgaaga cttaaactta caactatcaa acttcacagt
     2281 attatggact aaaattcaca actatcattg gtacgttaaa ggtcacaatt tcttcgcatt
     2341 acatgaaaaa tttgaagaac tttataacaa agtggctgtc tatgtagatg aaattgctga
     2401 gcgtgcactt gcattagaag gtaatccagt aggtacaatg aaagaagttt tagaagtttc
     2461 aagtattgaa gaagctgaga aaaatatttc agctgagcaa atggttgcac aattagctac
     2521 agacttcgaa acagtggtta aagaattaaa acaagcgcaa ggtaacgcag aagacgctgg
     2581 cgatgatcgt tcagcagaca tgtttatcga aattgcgaca gaattagaac ataacatttg
     2641 gatgttgaaa gcttatattg gttaatttat ttggtgattt gagactcgag tcgtcttgag
     2701 atagtgtaac tatttcaatg atgattcgag tcttttttgt tttatcacca aatttttatt
     2761 ttgaagttgg agataaaagc ttgaaaaatt gaagagatgg gacatcagaa agctgagaac
     2821 ttaggctaga tacttctatt aaatgaaaaa tgaaataaaa tttaagttaa atataattat
     2881 acgtaaaatt taaattggac tataaaatga gggggtgaga aagttagatg gatggtggct
     2941 aacttagtat aaagtgaggt gatgcctacg cacccatcaa cgaaaacttt agaaaggaga
     3001 ggccgtgaat aatcaatgtg atagacgtgc gcatgctgat ctttgctttc ggtaatttta
     3061 tcgtagcgcg catctgttta gtcgttttta ttgctattaa tgtcaaaaaa taaccatttc
     3121 taactttgga cgagttaaat agttattttt tatatttaac aaagccatcg tctatttaac
     3181 ggtctcattg aggtaatgca tatggtgtgc gttgcctttt atctatataa attactat
//
LOCUS       DANHOL010000195         3223 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.197, whole genome shotgun sequence.
ACCESSION   DANHOL010000195 DANHOL010000000
VERSION     DANHOL010000195.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 3223)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3223)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3223
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.197"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            14..1123
                     /locus_tag="PTC08_002249"
     CDS             14..1123
                     /locus_tag="PTC08_002249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002437509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683707.1"
                     /translation="MYQTNTRDLITKLPQSNKTEHFLMNKFSNQDKVQQLQRQISQQL
                     DQQYNELLSNEKAKLDQYVEVHHNLEPLKKEIESESINLDTDKLPDIKATMLEKAKND
                     EHSDKIEHLFDRLDQSLNGTNRLYTQLSLIGTRTHRITTKRFNVQGLPKLVQQTILPS
                     QFKKVYTIDFKSFEPSVAAYMTQDEQLIDYLNLEEGLYDALLRDLSLSKEKRVSVKRA
                     FIGSFLFGGRYSSSKFKINQEVSEINWLQVMSKFKKIIEFKEQVEKYKTMPTPYGIEH
                     DMSAFQGSSIMAIYVQTVASYIFKHILLEVYKAQCEQKTFKIIVPIHDAIMIECNDKE
                     IAQSVAQLMKDTANQLFNGEFAHVTVEALGGIDNE"
     gene            1116..1487
                     /locus_tag="PTC08_002250"
     CDS             1116..1487
                     /locus_tag="PTC08_002250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001058156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683708.1"
                     /translation="MNNDRGKSLQIPQSTSLKEGSIYVATLHSVTETDYSGDIKHQFT
                     YEIEIDQQIFYVNRSVVVNVTHQQLSINDWLERHSNYSASHENYEPYIDQKHLILLGQ
                     YNGNYYVQDVASLDAFGGVLS"
     gene            1484..3127
                     /locus_tag="PTC08_002251"
     CDS             1484..3127
                     /locus_tag="PTC08_002251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001015575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HDK5683709.1"
                     /translation="MNHILQMLSKLLSVAKEAIDRQGLIAILTIPVNNDDEIEETAQG
                     ETVYNELIDQLRLNIPKDTDYRPNIYSYFGIKKNPNDTVLMEMMIKVFHIKRFNSELF
                     VFKANGWQKINGDELQGLISKMIQVLLVDYKPSLSTLKNVVDGLQKSTDVEELVENEH
                     YIGCGENMFDLNTFQVVKNSIDIFPKTRLNLSLSTNDVITDKIPPYFKQYMLQLANYD
                     DDLQYFLFQHTAVLLTADTKYRRGLILYGGAKNGKSVYIELVKSFFYSKDIVSKPLNE
                     LEGRFDKESLIDKSLMASHEIGQSRIQEKIVNDFKKLLSVESMHVDRKGKTQVEVILD
                     LKLIFSTNAILNFPPEHAKALERRVNIIPCEYYVEKADTSLIDKLQSEKKEIFLYLMY
                     VYQQIVKADIEYLENSRVTEITHDWLNFGYEFVSSRSVSIPNQKACINLLRKLIEIKS
                     GSRIKVSELNKVINEEIKVSSQVINQLIQANFDTQTKLYNGYDYWIDLGWKEANKKEI
                     HDISEKDNIISLDKNENITDDEALDEENLDFDWEDFDDE"
BASE COUNT         1207 a          473 c          592 g          951 t
ORIGIN      
        1 ggagcaaaac actatgtatc aaacaaatac acgtgattta attacaaaat tacctcaaag
       61 caataaaaca gaacactttt taatgaacaa attttcaaat caagataaag ttcagcagct
      121 acaaagacaa attagccaac agctagatca acaatataat gagcttttgt ctaatgaaaa
      181 agctaagcta gaccaatatg tggaagtaca ccataattta gaaccattaa agaaagagat
      241 tgaatcagaa tctattaacc ttgataccga taaattacct gatatcaaag cgacaatgct
      301 tgaaaaggct aagaacgatg aacattctga taaaatcgaa cacctatttg atagattaga
      361 tcagtcatta aatggtacga atcgattata tacacaatta tcgttgattg gcacacgaac
      421 acatcggata acaacgaaaa gatttaatgt tcaaggctta cctaaattag tccaacaaac
      481 gattttacct tcgcaattta aaaaggttta tacaatagat tttaaatcat tcgaaccatc
      541 agttgctgcg tatatgacac aagacgaaca actgattgac tacttgaatc ttgaagaagg
      601 gttatacgat gcattactga gagacttatc tttgtcaaaa gagaagcgcg tgagtgtgaa
      661 acgtgcattt atagggtcat ttctttttgg cggtcgttat agtagctcta aattcaaaat
      721 caatcaagag gttagtgaaa ttaactggct acaagtaatg agcaaattca agaagatcat
      781 tgaatttaaa gagcaagtcg aaaaatataa aacaatgcct acgccttacg gcattgaaca
      841 tgatatgagc gcatttcaag gtagtagtat tatggcaatt tacgtacaaa cggtagcgag
      901 ctatattttc aagcacattt tgttggaagt gtacaaagca cagtgcgaac aaaaaacgtt
      961 caagattata gtgccgatac acgatgcgat tatgattgaa tgtaatgata aggagattgc
     1021 acaaagtgta gcacagctca tgaaagatac agctaatcaa ctgtttaatg gtgaatttgc
     1081 acatgtgaca gtggaagctt taggaggtat agacaatgaa taatgataga ggaaaaagtc
     1141 ttcaaattcc ccaaagtaca tcgttaaaag aaggatctat atacgttgct acattacatt
     1201 ctgtgactga gacagattac tcaggcgaca taaaacatca atttacgtat gaaatagaga
     1261 tagatcaaca aatattctat gtgaaccgta gtgttgtggt caatgtgaca catcaacaat
     1321 tatcaattaa tgactggctc gaacgtcata gtaactatag cgcaagtcat gaaaactatg
     1381 agccttatat tgatcagaaa catttaattc tattaggtca atataacggt aactattatg
     1441 tacaagatgt agcatcgtta gatgcgtttg gaggcgtatt atcatgaatc atatattaca
     1501 aatgttatct aagctattaa gtgtggctaa ggaggcaatc gaccgtcaag gtctgattgc
     1561 tatcctaact attcctgtta ataatgacga tgaaatagaa gaaacggctc aaggtgaaac
     1621 cgtgtataac gaacttatcg atcagttacg acttaatatc ccaaaagata cggattatcg
     1681 acctaacatc tatagttatt ttggtattaa gaagaatcct aatgacaccg tactcatgga
     1741 aatgatgata aaggtttttc atatcaaacg ctttaattca gaactgtttg ttttcaaagc
     1801 taacgggtgg caaaagataa atggagatga attacaaggg ttgatatcta aaatgataca
     1861 agtattgctt gtagattata agccttcact aagcactcta aaaaatgtcg tagatggatt
     1921 gcaaaaatca acagatgtag aagaacttgt tgaaaatgag cactatattg gttgtggtga
     1981 aaatatgttc gatcttaata cgtttcaagt cgttaaaaat tcaatcgata tctttcctaa
     2041 aacacgattg aatttatcat taagtacaaa tgatgtaatt actgataaga taccgcctta
     2101 ttttaagcaa tatatgttac aacttgcgaa ttatgacgat gatttacaat actttctttt
     2161 ccagcataca gcagtattac ttacagctga tactaaatac cgtagaggtc tcattttgta
     2221 tggtggagct aagaatggta aatctgtata tattgaacta gttaaatcat ttttctatag
     2281 taaagatatt gtgtctaagc cacttaatga gcttgaaggt cgttttgaca aagaaagttt
     2341 aattgacaaa agtctaatgg caagtcatga aattggacaa tctaggattc aagaaaagat
     2401 cgtaaatgac ttcaaaaagt tattatctgt agaatcaatg catgttgatc gtaaaggaaa
     2461 aactcaagtg gaagtcattt tggatttgaa acttattttt agtacaaatg cgatacttaa
     2521 ttttcctcct gaacatgcga aagctttgga gcgtcgagtt aatattattc catgtgagta
     2581 ttatgttgaa aaagcggaca cttcattaat tgataagctc cagagtgaga agaaagaaat
     2641 ctttctttac ttgatgtatg tgtatcaaca gattgtaaaa gcagatatcg agtaccttga
     2701 aaatagccgt gtcactgaaa ttactcacga ttggttaaat tttggatatg aatttgtttc
     2761 tagcaggtcc gtaagtattc caaatcagaa agcatgtatt aatttactca gaaaacttat
     2821 agaaatcaaa tcaggatcac gaatcaaagt atccgagtta aataaagtta ttaatgaaga
     2881 aataaaggtg agttctcagg ttattaatca gttaattcaa gcaaactttg atactcaaac
     2941 caaactatac aatggctacg attattggat tgatttaggt tggaaagaag ccaataaaaa
     3001 agagattcat gatatttcgg aaaaagataa tattatttca ttagataaaa atgaaaatat
     3061 aacagacgat gaggcattag atgaagagaa tttggatttt gattgggagg actttgacga
     3121 tgaataatga acaaattgaa gcatttgtag aagtgcttgt gcctatcata gaagaacgta
     3181 tcaataaagg taagtaatct aattacgtac tacaggcaac tgc
//
LOCUS       DANHOL010000196         3168 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.198, whole genome shotgun sequence.
ACCESSION   DANHOL010000196 DANHOL010000000
VERSION     DANHOL010000196.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 3168)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3168)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3168
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.198"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            731..2683
                     /locus_tag="PTC08_002252"
     CDS             731..2683
                     /locus_tag="PTC08_002252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614888.1"
                     /note="The YSIRK form of extended signal peptide directs
                     nascent proteins to the cross-wall site, while signal
                     peptides lacking YSIRK direct proteins instead to the cell
                     pole. A large fraction of YSIRK proteins are surface
                     proteins anchored by sortase-mediated processing of a
                     C-terminal LPXTG motif; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YSIRK-type signal peptide-containing protein"
                     /protein_id="HDK5683710.1"
                     /translation="MLRTNYKLRKLKVGLVSTGVALTFVMASGNAEASENEQTEVKGE
                     AQVASVNEKESEAELPVAQQEASIQLDKVQPGDAQLSGYTQPNKAISVKIDNKDIVSV
                     DDGYEEVLSDDTGKFVYDLKGRQIVYNQKVDVEAMTPFNFEDFDESALESEEALEALG
                     QLEDEETATASVTTPRYEGAYTVPEERLTPIQGQQQVFIEPILEGASKIKGHTSVQGK
                     VALAINQEHVHLGDTLEEQAALTDQEWQGRYDGIWRHIDDQGFFEFDLNRLYNKSYPL
                     KSGDLVTLSFKSNDEVGPLFNVNVEPFERVAQAKTKYEQNDSPVVNKLDDTKSDLEVQ
                     PIYGDLTQAAVHGESKVLIPGTSKVEGRTNYAHAWIEMASNLGEYRSFPTLQADATGA
                     FIFDLKAADIQLLNGERLTFRAVDPHTKQQLAETTSEVRPVDMQDEESEVVQTSSTEK
                     SALADEILRSMTIDKSFNPEVTEIPGHVYPKKTEDKGAENTEQASENSEKPSQTTESQ
                     NDAVQDVEKSSVNEEVTPPSTESAQVEKGQNTEGALLPKNVEQHVESIPYQKRKALIG
                     LTKHQGSGHMPPFSLSFNNKEDDVSTKVNEANEHERKQGTVYPEQIEQLPQTGLTEKS
                     PFWALLFVVSGTGLLLFKRSRRQRQS"
BASE COUNT         1161 a          490 c          674 g          843 t
ORIGIN      
        1 taagacgttg gggatcaaac cataatgcat atgagagatg actgaggaat taacgtcata
       61 ttctaaaaca agtgatgagc aatgcaatca agatgtctat tgggggagga aataaaaacg
      121 gtttatttta acacaatatt tttatagctg tagacaaaaa gacatctaga gactctgaca
      181 tgttaaagtc aaaatttcta gatgattatg attaggttta atgatgatgg gcatatgagt
      241 ttatatacgt tgagaatgaa aacaacaatg atagatatga gatgaaataa ataataaagt
      301 atagtacaag aaatatattg aaaataatgt gtataacttg gcatttaaga tacggcacct
      361 tttgatatgt ttattaataa taagccttcc tatatgatgt tcgtcataaa aaagcttact
      421 aacgaaatgt gtcatcataa tgagcagaat agtaaactgt gattgtgcga taacgatgcc
      481 ataataatgc caatcctttg tgagtacccc ctatttgtat aaaatgagtg agttggaaga
      541 gggtgtgtga ggttcacttt aggaggcatc tatattatta atatgtacaa ataaacaagc
      601 gaaaaaatta aaatccctga acgttagatg ccgtactttt aattaatagt taataatcag
      661 ttaataacat ttatttcatt aatatattaa agtatataaa gaatgaataa gtagaagagc
      721 gaggataaca atgttaagaa caaattataa actaagaaag cttaaagtag gtttagtatc
      781 gacaggtgtg gcgttgactt ttgtgatggc aagtgggaat gcagaggcgt cggagaacga
      841 gcagactgaa gtaaaagggg aggcgcaagt agcttctgtg aatgaaaaag agagtgaagc
      901 agaattacct gtagcgcaac aagaagcatc tattcaacta gacaaagtac aaccaggcga
      961 tgcacagctt tcaggctata cacagccaaa caaagcgatt tctgtaaaga tcgacaataa
     1021 agatattgtg tctgtagatg atggctatga agaggtatta tcggatgata caggtaaatt
     1081 tgtatatgat ttgaaagggc gtcaaattgt ttacaatcaa aaagttgatg ttgaagcgat
     1141 gacgccattt aattttgaag attttgatga atcagcactt gagagcgaag aggccctaga
     1201 ggcgttaggt caattggaag acgaagaaac agcgacagct tctgtgacga cgcctagata
     1261 tgaaggtgcg tatacagttc ctgaagaacg cttgacgccc attcaaggcc aacagcaagt
     1321 attcatcgaa cctattttag aaggggcaag taaaatcaaa ggacatacat ctgtacaagg
     1381 taaagtcgcg ttagcaatca atcaagaaca tgtgcaccta ggtgatacgt tagaagaaca
     1441 agcagcactc actgatcaag agtggcaagg tcgttatgat gggatttggc gccatattga
     1501 tgatcaaggg tttttcgagt ttgacttgaa ccgtctttac aataaatctt acccattgaa
     1561 gtctggcgat ttagtgactt tatcttttaa atctaatgac gaagtaggcc cattattcaa
     1621 tgtgaacgtt gagcctttcg aacgtgtggc acaagctaaa acaaagtatg agcagaatga
     1681 cagtccagta gtcaacaaat tggatgatac taaaagtgac ttggaggttc aacctatcta
     1741 tggagacctt acacaagcag cagtacatgg cgagtcgaaa gtgttgatac cggggacgtc
     1801 aaaagttgaa ggacgtacga attatgcaca tgcatggata gagatggcat ctaatttagg
     1861 ggaatatcgt agtttcccta cattacaagc tgatgcgaca ggtgcgttta tatttgattt
     1921 aaaagcggca gacatacaat tgttaaacgg agaacgtttg acattcagag ccgttgaccc
     1981 acatacaaaa caacagttag ctgaaactac atcagaagta cgcccagtag atatgcaaga
     2041 tgaagagtca gaggttgtgc agacttcaag cactgagaaa tcagcacttg cggatgaaat
     2101 tcttcgttct atgacaattg acaaatcatt taatcctgaa gttaccgaga taccgggtca
     2161 tgtatatcct aagaaaacag aggataaagg tgctgaaaat acagaacaag cctcagagaa
     2221 ttctgagaag ccatctcaga ctacagaatc tcaaaatgat gccgtacaag atgtagagaa
     2281 atcctctgtt aatgaggagg ttacgccacc ttcaacagaa tctgctcaag ttgaaaaggg
     2341 gcaaaataca gaaggggctt tgcttccaaa aaatgtagaa caacatgtag agagtatacc
     2401 ataccaaaaa cgtaaagcgt tgataggact gacaaaacat caaggatcag ggcacatgcc
     2461 gccattttct ttaagcttta acaataaaga agatgacgta tcaacaaagg ttaatgaagc
     2521 aaacgagcat gaacgtaagc agggtacagt ttatccagag caaatagaac aattacctca
     2581 aacaggttta actgaaaaat cgccattctg ggcattgtta tttgttgtat caggcacagg
     2641 tttattatta ttcaaacgtt ctagacgaca acgccaatct taatagttga aaataatgtt
     2701 atcatactgg atgtgttagc atatggattg tattaaatga ctctactgtg aaagtagcca
     2761 tgcaccatca tcagaaaaca gtatagtgta acaaaaatct atagaacaat tatcaagcga
     2821 aaacaatacg aggttttcgc ttgtttcatt ttatgaattg tatacttttg cggttggtgg
     2881 ggcatctact gaccgcattt tatttttgat ataaaaaaca caaaaccgct atcattgtaa
     2941 ttttcaaacc aataaagaag atattgcgct tatgtacaat atgtaatgat attgaagaaa
     3001 gacagagaat taaagttaaa aactacttaa aaattggggt aacatgcaca tcaaaacgta
     3061 atggcttatg atgcaaagat taagataagc gcatgtttga caactataaa aatgggcagt
     3121 taaatccaat tgatgattga gacaactaag ggaagcaata aaacatag
//
LOCUS       DANHOL010000197         3101 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.200, whole genome shotgun sequence.
ACCESSION   DANHOL010000197 DANHOL010000000
VERSION     DANHOL010000197.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 3101)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3101)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3101
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.200"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(<1..663)
                     /locus_tag="PTC08_002253"
     CDS             complement(<1..663)
                     /locus_tag="PTC08_002253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683711.1"
                     /translation="MMKEMIYFKRETPLQEISLFLRPYEKMNSDFAHVLEHILTARVK
                     DDGFHILGAHATEDYIKITLKDDFDIELFKPAPYLYEFNQQEFNRALSEIKQERALEN
                     KEIKNIMNKMRGLKQDAIVNQDLEYYNGLLQNTLDTFSFIFINNDICNEVAHHVFFKD
                     EVIEKVTQPMTAKSGTLSHNKVEFFFKYINIPVHSIQEASTIFYIQKLIGFINKKMAN
                     LRS"
     gene            complement(660..1472)
                     /locus_tag="PTC08_002254"
     CDS             complement(660..1472)
                     /locus_tag="PTC08_002254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SagB family peptide dehydrogenase"
                     /protein_id="HDK5683712.1"
                     /translation="MEHFKSIMISNDYATRLSSKCVLSQTYHQNTKHSKRYLMSNMYQ
                     SRVLLNSPNFLKATQSPERYFPTQQHFKLNAHSSGLLTEYLDKRRSQVHSPDKDAFID
                     LNVLSDLFWAAYGKNSQNKRVVPSAGALYPLEIYGIVFNDYENFKKGLYHYNPSTHAL
                     SLLDNGAHVFDISQYIMRYQNMEHPSIIFFITAVFSRATFKYDDRAYRYILLEAGAVA
                     QNISLMATHYNLVSTSIGGTDDFKVEEMLKIDGNHESIVDCVFITKDREAVL"
     gene            complement(1492..2712)
                     /locus_tag="PTC08_002255"
     CDS             complement(1492..2712)
                     /locus_tag="PTC08_002255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcaO-like family protein"
                     /protein_id="HDK5683713.1"
                     /translation="MTVKLKAQNFVDEKYGIIKNIYDLPTYYGLPKVYVKMAFGGQYN
                     TAGFNASGAGITEAQAVNSAVGEYIERYSCLHPHRVMKVSKGVVKINPQKINASASAN
                     LDDYQWIHGYDLIQKRTVALPVDAVYLTYRSNKKQSWMTTATGAACGPNLKACFWKGI
                     AEIFERDAFQYIWRRQIACEQIRINDNRELRSYFNRYIKSENIQFKLYKMDMDWDVPA
                     VFGVAILPNKGCVVAASVRPTWIEACKKTLLELAQSIVGYAAIIFKVDENIEVHSYDE
                     VKEYQDHSLLYFNDHMSQHLSFLDGHQHIFRIPENEIQPDDDEAVTLFIEKIKSIDKQ
                     VYFVDVTSEEIKHTDWKVGKTIIPRMLDIEPHFIKHLESSRLNEVDRNLIKMKKRQPN
                     ELKNSQPIVPHPFP"
     gene            complement(2709..>3101)
                     /locus_tag="PTC08_002256"
     CDS             complement(2709..>3101)
                     /locus_tag="PTC08_002256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683714.1"
                     /translation="PYNSVIFDNVSFEVTYTIPKETSCLNCKRLRETENNVYGEVFSL
                     FNDSSHESKEYVPEEIIQLALSFVAVQMLKEAMQMNDLSVENELIQTVYAYSLLNEGW
                     RTHNLFKHPNCELCFPESVNTQVFEVRL"
BASE COUNT          935 a          606 c          477 g         1083 t
ORIGIN      
        1 gcttcttaag ttcgccattt tcttattgat gaatccgatt aatttttgaa tgtaaaaaat
       61 agttgatgct tcttggatag aatgaactgg gatattaata tacttgaaga aaaactcgac
      121 tttgttgtgt gatagcgttc cacttttcgc tgtcatcggt tgtgtcacct tttctatcac
      181 ttcatcttta aaaaaaacat gatgagccac ttcattacat atgtcattat tgatgaagat
      241 gaacgagaaa gtatccagcg tgttttgaag tagtccgtta taatattcca aatcttgatt
      301 cactattgca tcttgtttca gacctctcat cttgttcata atatttttga tttccttgtt
      361 ttcaagtgca cgctcttgtt taatttcact caaagctctg ttgaattctt gctgattaaa
      421 ttcatataaa tatggagcgg gtttaaaaag ctcaatatca aagtcatctt tcaaagtgat
      481 tttgatgtaa tcttctgtcg catgtgcacc taaaatatga aaaccgtcat cctttactct
      541 tgccgttaaa atgtgctcga gtacatgtgc aaagtcactg ttcatttttt catagggtct
      601 aaggaataat gaaatttctt gtaatggcgt ttctctttta aaatatatca tttccttcat
      661 cataaaaccg cctctctatc tttagttata aatacacagt caacgatact ttcatgatta
      721 ccatcaattt ttaacatttc ttctacttta aagtcgtcag tcccccctat agaggtactc
      781 actaaattgt aatgggttgc cataagtgaa atattttgag ccacagcgcc tgcttctagc
      841 aaaatatatc tgtatgccct gtcgtcatac ttaaaagtag cccttgaaaa aacagctgta
      901 ataaaaaata taatagaagg atgttccatg ttttgatatc tcataatata ttgggagata
      961 tcaaaaacat gcgcgccatt atctaacaga ctgagagcat gcgtcgaagg attgtaatgg
     1021 tagagtcctt ttttaaaatt ttcgtaatca ttaaaaacaa tgccatatat ttctaacgga
     1081 tataaagcgc ccgctgaagg gacaacccgt ttattttgac tattctttcc ataagctgcc
     1141 caaaacaaat ctgaaaggac atttaaatcg ataaaagcat ctttatccgg actatgaact
     1201 tgagatcttc tcttatctag gtattctgtt agcaaaccag atgaatgtgc attcaatttg
     1261 aaatgttgtt gtgttggaaa atagcgctcc ggactttgtg tcgctttaag aaaattcgga
     1321 ctatttaata aaactctaga ttgatacata ttgctcatta aatatctttt gctatgcttc
     1381 gtattttgat gatatgtttg actcaataca cattttgaac ttaatcgagt cgcataatca
     1441 ttactgatca ttatagattt gaaatgttcc atggcatact cctttaaaat attatgggaa
     1501 aggatgtggg acaatcggtt gactattttt taactcatta ggctgccttt tcttcatttt
     1561 aattagattc ctatcgactt cattaaggcg gctactttct agatgtttaa taaaatgtgg
     1621 ctctatatca agcattctag ggataatcgt tttccctact ttccaatccg tatgttttat
     1681 ctcttcagaa gtcacatcta caaaatacac ctgcttatca atagacttta ttttttctat
     1741 aaataaagtc actgcctcat cgtcatctgg ttgtatctcg ttttcaggaa tccgaaaaat
     1801 gtgctgatga ccatcaagaa acgacaaatg ttgcgacata tgatcattga aatataaaag
     1861 agaatggtcc tgatattctt tcacttcatc ataactatga acctcaatat tttcatcaac
     1921 tttaaaaata attgccgcat acccaacaat actttgtgct aattctagta aagttttttt
     1981 acacgcctca atccatgtag gtctcacact cgcggcgaca acacaccctt tgttgggaag
     2041 aatagccact ccaaaaacag cgggcacatc ccaatccata tccattttat ataacttaaa
     2101 ttgaatattt tcagatttga tataacgatt aaaataactt cttaattctc tgttatcatt
     2161 gatacgaatt tgctcacaag caatttgtct tctccaaata tactggaaag catctctttc
     2221 aaatatttct gcaatacctt tccaaaaaca tgctttgaga ttcggtccac acgcagcgcc
     2281 agttgctgtc gtcatccaac tttgcttctt attacttcta taagtgagat acactgcatc
     2341 tacagggagt gcgacggttc ttttttgaat caagtcataa ccatgaatcc actggtaatc
     2401 atcaaggttc gcacttgcag acgcattgat tttttgtgga ttgattttta ctaccccttt
     2461 acttactttc atgacacgat gaggatgcaa acaagaatag cgttcgatgt actctcctac
     2521 agccgaattt acagcctgtg cttctgtaat accggcacca ctcgcattaa atcctgcagt
     2581 attatactga cccccaaagg ccattttcac ataaacttta ggtagtccat aatatgtcgg
     2641 caaatcatat atatttttaa taataccgta tttttcgtcc acaaagtttt gggcctttaa
     2701 tttcactgtc ataatctcac ctcaaaaact tgtgtattca ctgattctgg gaagcacaat
     2761 tcacagttgg ggtgtttgaa taaattgtgc gtgcgccatc cttcatttaa taaagaataa
     2821 gcgtacactg tttggatcag ttcattttca acactcaagt cattcatttg cattgcttct
     2881 tttaacattt gtactgccac aaaactcaat gccagttgaa tgatttcttc tggtacgtat
     2941 tctttacttt cgtgagatga atcattgaat agcgaaaaaa cttcgccata tacattattt
     3001 tcagtttctc gtaaccgctt acaattcaaa caactcgttt ctttgggtat cgtataagtg
     3061 acctcgaaag aaacattatc aaaaatgaca ctattatatg g
//
LOCUS       DANHOL010000198         3067 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.201, whole genome shotgun sequence.
ACCESSION   DANHOL010000198 DANHOL010000000
VERSION     DANHOL010000198.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 3067)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3067)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3067
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.201"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            292..2913
                     /gene="clpB"
                     /locus_tag="PTC08_002257"
     CDS             292..2913
                     /gene="clpB"
                     /locus_tag="PTC08_002257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002433465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent chaperone ClpB"
                     /protein_id="HDK5683715.1"
                     /translation="MDINQMTHAIQNALQKAIEHAKTYKLTNVEVEAVLKAVLEAPES
                     LFQSILERANIDTHALNQAYEDKLKNYPTVKGDNVQYGQYMSPQMNNLFVKAENYMQE
                     YDDQYISMEHVLRAAIDVDETTKRYVDGKKEVIIEIIKKIRGGNHVTTQNPEVNYEAL
                     AKYGRDLVEEVRKGNMDPVIGRDEEIRNTIRILSRKTKNNPVLIGEPGVGKTAIVEGL
                     AQRIVKRDVPDSLLDKTVFELDLSALVAGAKYRGEFEERLKAVLKEVKESEGRILLFI
                     DEIHMLVGAGKTDGAMDAGNMLKPMLARGELHCIGATTLNEYREYIEKDSALERRFQK
                     VAVAEPTVEDTISILRGLKERYEVHHGVRIQDRALVAAAELSDRYITDRFLPDKAIDL
                     VDQASATIRTEMGSNPTELDQANRRVMQLEIEENALKKESDKASRIRLKELQEELAEE
                     KEKQAALQARVENEKEKIAKVQEKRAELDESRKALEDAENNYDLEKAAILQHGKIPEL
                     EKELKALEAAFQEEKGTDSDRIIREVVTDEEIGEIVSQWTGIPVSKLVETEREKLLHL
                     SDILHERVVGQDRAVDLVADAVVRARAGIKDPNRPIGSFLFLGPTGVGKTELAKSLAS
                     SLFDSEKHMIRIDMSEYMEKHAVSRLIGAPPGYVGHDEGGQLTEAVRRNPYSVILLDE
                     VEKAHTDVFNVLLQILDEGRLTDSKGRSVDFKNTIIIMTSNIGSQILLENVKDSGKID
                     DATEKAVMNSLNAYFKPEILNRMDDIVLFKPLTVDDMQMIVDKILINLNIRLMDQRIT
                     LEISDEAAKWMGETAYEPQFGARPLKRFVQRHVETPLARMMIKENLPEGTIVRGDLKD
                     GDIHFEVEKPQRTQHEN"
BASE COUNT         1101 a          493 c          670 g          803 t
ORIGIN      
        1 taatgatctc taccataaga ttgcgaggcc atgatggcag tctaaaacta ctaatcataa
       61 ggaaggcaag ttcaacaaaa atatttcatc aatagcatcc aaaactttga tgtccttatt
      121 tttaatgatt gaaaaagctg tatggggtta aatatatggg ggagtattta aaaatagtca
      181 aaaaaagtca aagctatcga ttgattttta gtgaatgtgg acttataata gaattaaggt
      241 caaagaaagt caaagtcaat tcgacctatt ccaataaagg agtgagacat tttggacatt
      301 aatcaaatga cacatgcgat tcaaaatgca cttcaaaaag caattgaaca tgcgaaaacg
      361 tacaaattaa caaatgtaga agtagaggct gtattaaaag cagttcttga agcaccagaa
      421 agcttatttc aaagtatttt agaacgtgca aacattgata cgcatgcttt aaatcaagcc
      481 tatgaggaca agctaaaaaa ttatccaaca gtgaaaggtg acaacgtcca atacgggcaa
      541 tatatgtcgc ctcaaatgaa caatttattc gttaaagctg aaaattacat gcaagaatat
      601 gatgatcaat atatttcgat ggaacatgtt ttacgtgcgg ccatcgatgt tgatgaaacg
      661 acgaaacgat atgttgacgg taaaaaagag gtcatcattg aaatcattaa aaagataaga
      721 ggagggaatc atgtgactac acaaaaccct gaagtaaact acgaagcatt agcaaaatat
      781 ggtcgtgacc tcgttgaaga agtgcgtaaa ggtaacatgg accctgtcat tggtcgtgat
      841 gaagaaatac gtaatacgat tcgtatttta agtcgaaaaa cgaaaaacaa ccctgtactt
      901 attggtgaac ccggtgttgg taaaacggcg attgttgaag gattggcaca acgtatcgtg
      961 aaaagagatg tgccggattc attgcttgat aagaccgtgt ttgaattaga cttgagtgcg
     1021 ctcgttgcag gtgcgaaata ccgtggtgaa tttgaagaac gactcaaagc ggtattaaaa
     1081 gaagtgaaag aatcagaagg ccgtatttta ctcttcatag atgaaattca tatgttggtc
     1141 ggtgcaggta aaacggacgg tgcgatggat gccggcaata tgctgaaacc gatgttagct
     1201 agaggtgaac ttcactgtat tggtgcgaca acattaaatg agtatcgtga atacatcgaa
     1261 aaagattctg cgttagagcg tcgttttcaa aaagttgcgg ttgcagaacc gactgttgaa
     1321 gatacgattt ctattttaag aggtttgaaa gaacgttatg aagtccatca tggcgtgcgt
     1381 attcaagacc gcgcactcgt tgcggcagcg gaattgtcag atcgctatat tacagatcgg
     1441 ttcttaccgg ataaagcgat tgatttagtg gaccaagctt cagcaacgat tcgaacagaa
     1501 atgggttcaa atccaactga actcgaccaa gcgaatcgtc gtgtgatgca gttagaaatt
     1561 gaagaaaatg cattgaaaaa agagtccgat aaagcaagcc gtattcgttt gaaagaattg
     1621 caagaagaat tagctgaaga aaaagaaaaa caagcagcat tgcaagcacg tgtggaaaat
     1681 gaaaaagaaa aaattgcaaa agtgcaagaa aaacgtgcag aacttgatga aagtcgtaaa
     1741 gcattagaag acgcagaaaa caactatgac cttgaaaaag cagcaattct tcaacacggt
     1801 aaaattccag aattagaaaa agaactaaaa gcgttagaag cggcattcca agaagaaaaa
     1861 ggtacagact cagaccgcat tattcgtgaa gttgtgacag acgaagaaat cggtgaaatc
     1921 gtcagtcagt ggacaggtat tcctgtgtca aaattggtcg aaactgaacg tgaaaaatta
     1981 ttacacttat ccgatatttt acatgagcgt gttgtaggcc aagatcgtgc ggtagattta
     2041 gtagcagatg cggttgtacg ggcgagagca ggaattaaag acccgaaccg tcctattggt
     2101 tcattcctat ttttagggcc aacaggggtc ggtaaaacag aattagccaa atcattagcg
     2161 tcatcattgt ttgattctga aaaacatatg attcgcatag atatgagtga atatatggaa
     2221 aaacacgcag tctctcgtct aataggagcg cctccaggtt atgtgggtca cgatgaaggt
     2281 ggtcaattaa cagaagcagt gagacgcaat ccttattcag tcattttgtt agacgaagta
     2341 gaaaaagcac atacagatgt ctttaacgta ttactgcaaa ttttagacga aggtcgctta
     2401 acagattcaa aagggcgtag cgttgatttc aaaaacacaa ttatcatcat gacaagtaat
     2461 attggttcac aaattttact tgaaaatgtg aaagatagtg gcaagattga tgacgcaaca
     2521 gaaaaagcag tcatgaacag tttgaatgca tacttcaaac ctgaaatttt aaaccgtatg
     2581 gacgatatcg tattattcaa accattaact gttgacgata tgcaaatgat tgttgacaaa
     2641 atcttaatta atttgaatat ccgcttaatg gatcaacgta ttacgttaga aatttcggat
     2701 gaagcggcaa aatggatggg tgaaacagct tacgaacccc aatttggtgc acgtccactt
     2761 aaacgtttcg tgcagcgaca tgtcgaaaca ccacttgcac gtatgatgat taaagaaaac
     2821 ttaccagaag gcacaatcgt acgtggtgat ttgaaagatg gcgacattca ttttgaagtt
     2881 gaaaagcctc agcgtacaca gcatgaaaac taatgtaata aaatgaaaat ggattgtaat
     2941 atttgatttg tattcccgcc ccaattctca tttaaaatga atttaagggt gggaattttt
     3001 gatatcaaag ccaaatactg tgatgttatt ctaaaaattc gtcatgtact gtgtcgtttc
     3061 aaagtcg
//
LOCUS       DANHOL010000199         3064 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.202, whole genome shotgun sequence.
ACCESSION   DANHOL010000199 DANHOL010000000
VERSION     DANHOL010000199.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 3064)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3064)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3064
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.202"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            31..1137
                     /locus_tag="PTC08_002258"
     CDS             31..1137
                     /locus_tag="PTC08_002258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016424838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HDK5683716.1"
                     /translation="MIGYGVVGVGYFGAELARAMKKNKGAKIISVYDPENGEQISTEL
                     ECKCANSLEELVSDSEIDCVIVATPNNLHKEPVLEAAKNKKHVFCEKPIALNYKDCVE
                     MVSACKEAGVIFMAGHIMNFFNGVHHAKELIQQGVIGDVLFVKSARNGWEEAQPSISW
                     KKMRDQSGGHLYHHIHELDCVQFIMGGMPEKVTMTASDIAHNGEAFGDEDDFIMMNLE
                     FSGNRYAHLEWGSAFRWGEHYVMIQGTKGAIMLNMYDTGGTLRVDGKETHFLIHENQE
                     EDENRTQIYHGTEMDGAIQYGHPGKRTPLWLNTLIHKEMEFFNDVIHGKEVSSEYLKL
                     LDGTAAEEAIATADAATLSNLEDRKVSLSEILNR"
     gene            1178..2626
                     /locus_tag="PTC08_002259"
     CDS             1178..2626
                     /locus_tag="PTC08_002259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDK5683717.1"
                     /translation="MKQKEGAVSSSQNMTAIKVDAKPFGMKDKIGYMLGDIGNDAILG
                     LVNSFLMIYYTNVLGIAGSVVGILFLISRIIDAFADVSVGRMVDVAELTPDGRFKPWI
                     RRMKYPFCIISLLLFLPLVHDWNDGAKIAYIFATYLIFGVVLSAINIPYGSMAAAISD
                     HPDDRAALSTFRSVGAAIGMSSTGFLIPMFIYTTNAHGEKTISGMRFFIIAIICCSIA
                     FIVYNIINHMLVERVQVKKKEKVTVGKLLKGLFTDRAILVLIIVDFFVVLTQILYGTT
                     TTYLFNDYFHSPKAMSIAMLFNWGTVVLVAAPTIYLVRKFGKKEVTMIALPFSSLMFF
                     LLFFLHTTNPWVYVTLMFFATIGYSVFNVIVWALITDVIDAHQYNTGLREDGTVYGLN
                     SFARKVAQAFSGGIGGFMLAFIGYQSSTVGGAMQSEVVQERIYMISNLLPAVLFLVAA
                     LILMFGYPMNKKTTDRIARELREERERMQVKI"
     gene            2677..>3064
                     /locus_tag="PTC08_002260"
     CDS             2677..>3064
                     /locus_tag="PTC08_002260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sialidase"
                     /protein_id="HDK5683718.1"
                     /translation="MLAFNQEVRAENNPVKDQSIFKSGDTTQANYFRIPALYTLSNGE
                     MIASADARYGGTHDAKSKINIATSTSFDGKNWTSPTFALQFHDYESQLIDWPRDNVGK
                     NRQIQGSASFIDSAIVQDKNTNKIFLM"
BASE COUNT         1046 a          416 c          644 g          958 t
ORIGIN      
        1 ttgaaaggag tttttagaat gacaaatgaa atgataggat atggtgtagt tggcgttggt
       61 tattttggtg cagagcttgc tagagcaatg aaaaaaaata aaggagcgaa gattatatca
      121 gtatatgatc cggaaaatgg tgaacaaata tctacagaac ttgaatgcaa atgtgcgaat
      181 agtttagagg aattagtatc tgacagtgaa attgattgtg tcattgttgc aacacctaac
      241 aaccttcata aagaaccagt actagaagca gcaaaaaata aaaaacatgt attttgtgaa
      301 aaacctattg cattaaacta taaagattgt gttgagatgg tcagtgcatg taaagaggct
      361 ggagttatct ttatggcagg tcacattatg aatttcttta atggtgtgca tcatgcaaaa
      421 gaattgattc aacaaggtgt aataggggat gtgttatttg taaaatcagc tcgaaacggt
      481 tgggaagaag cacaaccaag tatttcctgg aaaaaaatga gagatcaatc aggtggtcac
      541 ttatatcacc atattcatga attagactgt gttcaattta taatgggggg aatgcctgaa
      601 aaagttacaa tgaccgcatc tgatattgct cataatggtg aggcatttgg tgatgaagat
      661 gattttataa tgatgaactt agagttctct ggaaacagat atgcacattt agaatggggt
      721 tctgcattcc gatggggaga gcactatgtc atgattcaag gaacaaaagg cgcaatcatg
      781 ttaaatatgt atgacacagg tgggactctg agagttgatg gaaaagaaac acatttccta
      841 attcatgaaa accaagaaga ggatgagaac cgtactcaaa tttatcatgg cacagaaatg
      901 gatggtgcca ttcaatatgg tcatccagga aaaagaacac cactttggtt aaatacatta
      961 attcataaag aaatggaatt ctttaacgat gttatacacg gaaaagaagt atcaagtgaa
     1021 tatttaaaac ttttagatgg tacagcagcg gaagaagcta ttgctactgc cgatgcagca
     1081 actttatcaa atttagaaga tagaaaagtt tcattgagtg aaattttaaa tcgctaacga
     1141 caacaaggac gaattcattt aaaaggtgat gaaagatatg aaacaaaaag aaggggcagt
     1201 ttcaagcagt caaaacatga ccgctatcaa agttgatgca aagccatttg gaatgaaaga
     1261 taaaattgga tatatgttgg gtgacatagg taatgatgca attttaggtc tcgtaaatag
     1321 ctttttaatg atttattata cgaatgtact gggtattgca ggcagtgtag taggaatatt
     1381 atttttaatt tcaagaatta ttgatgcatt tgcagatgta tcagttggac gtatggtaga
     1441 tgtagcagaa ttaacgcctg atggtcgatt taaaccgtgg attagaagaa tgaagtatcc
     1501 gttttgtatc atctcattac tactattttt accattagtt catgattgga atgatggggc
     1561 aaagattgca tatatttttg cgacttactt gatttttggc gtagttttat cagccattaa
     1621 catcccatat ggttctatgg ctgcggcaat cagtgatcat cctgatgatc gagcggcact
     1681 gtcaacattt agaagtgtgg gggcagcaat agggatgtct tcaacgggat ttttaatccc
     1741 aatgttcatt tatacaacaa atgcgcatgg tgaaaaaaca atttctggaa tgagattctt
     1801 tattatcgca atcatttgtt gttcgattgc ttttattgta tataatatta tcaatcatat
     1861 gttagtagaa cgagtgcaag ttaagaaaaa agaaaaagtg actgtaggta aattattaaa
     1921 aggcttattt actgatagag cgattctagt tctaatcata gtagatttct ttgtagtatt
     1981 aactcaaatt ttatatggta ctactacgac atatttgttc aatgattact tccatagccc
     2041 gaaagcgatg tcaattgcta tgctatttaa ctggggaaca gttgtattag ttgcagctcc
     2101 tacaatttac ctagtaagga agtttggtaa aaaagaagta actatgattg ctctaccatt
     2161 ttcatcattg atgtttttct tgttattctt cttacacaca acgaaccctt gggtgtatgt
     2221 cactttaatg ttttttgcaa caattggtta ttcagtattt aatgtaatcg tttgggcatt
     2281 aataaccgat gtaattgatg cgcatcaata taatacaggt ttacgcgaag atggtacagt
     2341 ttatggtctg aattcatttg caagaaaagt ggctcaggcg ttttctggtg gtattggtgg
     2401 atttatgcta gcgtttattg gatatcaatc ttctacagtt ggaggtgcta tgcaatctga
     2461 ggttgtgcaa gaaagaattt atatgatatc aaatttactt cctgctgtat tattcttagt
     2521 tgctgcattg attttaatgt ttggttatcc aatgaataaa aagacgacag atagaatcgc
     2581 tagagaatta agagaagaac gtgaaagaat gcaagttaaa atataatgaa gaagattatc
     2641 aaattgggag tattatttac actagtcagt acgttgatgt tagcttttaa tcaagaggtt
     2701 cgagcagaaa ataacccggt caaagatcaa agtattttca aatcaggcga tacaacccaa
     2761 gcgaattatt ttagaatccc tgcattgtat acgttaagta atggagaaat gattgcaagc
     2821 gctgatgcac gctatggtgg gacacatgat gcaaaaagta aaattaatat agcgacatct
     2881 actagttttg atggtaagaa ctggacatcc cctacatttg cattacaatt ccatgattat
     2941 gaaagtcaat tgatagattg gccacgtgat aatgttggga aaaatagaca aattcaaggg
     3001 agcgcttcat ttattgactc agcaattgta caagataaaa ataccaataa aattttttta
     3061 atgg
//
LOCUS       DANHOL010000200         3011 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.203, whole genome shotgun sequence.
ACCESSION   DANHOL010000200 DANHOL010000000
VERSION     DANHOL010000200.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 3011)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3011)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3011
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.203"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            126..1094
                     /gene="pfkA"
                     /locus_tag="PTC08_002261"
     CDS             126..1094
                     /gene="pfkA"
                     /locus_tag="PTC08_002261"
                     /EC_number="2.7.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002462395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphofructokinase"
                     /protein_id="HDK5683719.1"
                     /translation="MKKIAVLTSGGDSPGMNAAIRAVVRKALYHNIEVYGVYQGYQGL
                     INDDIRKLELGSVGDIIQRGGTFLYSARCPEFKEKEVRQKGIENLRKRGIEGLVVIGG
                     DGSYRGAQRISEECKEIQTIGIPGTIDNDINGTDFTIGFDTALNTIIESVDKIRDTAS
                     SHARTFIIEVMGRDCGDLALWSGLAVGAETIILPETETDIKDIAEKIQHGIDRGKKHS
                     IIIVAEGCMTGDMCASELTKYINVDARVSVLGHIQRGGSPTGADRVLASRLGGYAVEL
                     LLNGETAKGVGIKDNRLVATNFDEIFNTSERQINQRMLGLTEELSI"
     gene            1113..2873
                     /gene="pyk"
                     /locus_tag="PTC08_002262"
     CDS             1113..2873
                     /gene="pyk"
                     /locus_tag="PTC08_002262"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HDK5683720.1"
                     /translation="MKKTKIVCTIGPASESEDMLEKLMKAGMNVARLNFSHGSHDEHA
                     ARIRSIRKIAKKLEKNIGILLDTKGPEIRTHDMKDGIITLEKGSHVIVSMQEVEGTAE
                     KFSVTYENLINDVEVGSFILLDDGLIELEVESIDHAAGEVHCKVLNTGELKNKKGVNL
                     PGVRVNLPGITDKDAEDIRFGIEQDVDFIAASFVRRASDVLEIRKILEEVGNRTISII
                     PKIENQEGIDNIEEILEVSDGLMVARGDMGVEIPPEAVPIVQKDLIRKCNKLGKPVIT
                     ATQMLDSMQRNPRATRAEASDVANAIYDGTDAVMLSGETAAGAYPEEAVKAMHDIAVA
                     AEQAQNYKQLLSDRTKLVETSLVNAIGVSAAHTALNLSVKAIVAATESGKTARTISKY
                     RPKSDIIAVTPFETTARQCTLVWGVYPVVREGNFTTDELLNNSVATAIESERVENGDL
                     LIIIAGVPTGESGTTNLMKLHLVGEDLASGQGIGRNSAVGRTVVVNNGSELKGRDLDQ
                     AVIVTPSIDESIIPYLDQAVALVTEEAGLTSSSAIIGLEKGIPTVVGVNNVVDTIPDN
                     ALVTVDATQGRVYEGYANVL"
BASE COUNT          990 a          480 c          677 g          864 t
ORIGIN      
        1 tggcggattg atgaattcat ttgaataaac cgttttcatt tgtttttgta tttatttatg
       61 atggaatgcg caatgaaatt gtggtatttt taacataaca actatgcaag aaagggtatg
      121 tctacatgaa aaaaattgca gttttaacaa gtggcggaga ttctccgggg atgaatgcag
      181 caattcgagc agttgtaaga aaagcgcttt atcacaatat tgaagtctat ggtgtgtatc
      241 aaggttatca aggtttaatc aatgacgaca ttcgcaaact cgagttgggt tcagttggcg
      301 atattattca acgtgggggt actttcttat attcagcacg ttgcccagaa tttaaagaaa
      361 aagaagtacg ccaaaaaggg attgaaaatc ttagaaagcg tgggattgaa ggtttagtcg
      421 ttattggtgg cgatggaagt taccgtggtg cacaacgtat tagtgaagag tgtaaagaaa
      481 ttcaaacgat tggtattcca ggtacaattg ataacgatat taatggtact gattttacaa
      541 tcggttttga tacagcgtta aatacaatta ttgaatctgt ggacaaaatc cgagatactg
      601 cttcaagcca cgcacgcact tttatcattg aagttatggg ccgtgactgt ggagatttag
      661 cattatggtc aggtttagct gtaggcgctg aaacaatcat tttacccgaa acagagacag
      721 acattaaaga tatcgcagaa aaaattcaac atggtattga tagaggtaaa aagcattcta
      781 ttatcattgt tgcagaaggt tgtatgacgg gtgatatgtg cgcatcagaa ttaacaaaat
      841 atattaatgt tgatgcacgt gtatctgtgc tcggccatat tcaacgtggc ggtagcccaa
      901 caggtgcaga ccgagtactt gcatcacgtt tagggggcta tgctgttgag cttttactta
      961 acggcgaaac ggcgaaaggt gtcggcatta aagacaaccg attagttgcg actaattttg
     1021 atgaaatttt taacacttca gaacgtcaaa ttaaccaacg tatgttaggt ttaactgaag
     1081 aattatctat ataattatag gaggcatttc caatgaaaaa aactaaaatc gtttgtacga
     1141 ttggaccagc atcagaatca gaagatatgt tagaaaagtt aatgaaagca ggtatgaatg
     1201 ttgcgcgatt aaacttttca catggctcac atgatgaaca tgcagcacgt attcgttcaa
     1261 ttcgtaaaat agcgaaaaag ttagagaaaa atattggtat cttacttgat actaaaggac
     1321 ctgaaatccg tacgcatgac atgaaagatg gcatcattac gcttgagaaa ggctcacatg
     1381 tcatcgtgag catgcaggaa gttgaaggta cagcggaaaa gttctctgtc acatacgaaa
     1441 acttaattaa cgatgttgaa gtcggttcat ttattttatt agatgatggc ttgattgaat
     1501 tagaggtaga atctattgat catgcagcag gtgaagttca ctgtaaagtt ttaaatacgg
     1561 gagaacttaa aaataaaaaa ggtgttaact taccaggagt acgtgtcaac ttaccaggta
     1621 ttacagataa agatgcggaa gatattcgtt ttggtatcga acaagacgtt gactttattg
     1681 cggcaagttt cgttcgtcgt gcaagtgacg ttttagaaat ccgtaaaatt ttagaagaag
     1741 tgggcaaccg tacaattagc attatcccta aaatcgaaaa tcaagaaggt atcgataata
     1801 ttgaagaaat tcttgaagtt tctgacggct taatggtagc cagaggggat atgggtgttg
     1861 aaattccacc agaagcagtg ccgattgtac aaaaagattt aatccgtaaa tgtaataagc
     1921 tagggaaacc agttattact gcaacacaaa tgttagactc aatgcaacgt aatcctcgtg
     1981 cgacacgtgc agaagcgtct gacgtagcga acgcgattta cgatggtaca gatgcggtaa
     2041 tgctttcagg tgaaactgca gcaggggctt atccagaaga agctgttaaa gcaatgcatg
     2101 atatcgcagt agctgctgaa caagctcaaa actacaagca actgttatca gaccgtacga
     2161 aacttgttga aacttcgctc gtaaacgcaa ttggtgtatc tgctgcacat acagccttaa
     2221 acttaagtgt taaagcgatt gtggctgcaa cagaaagtgg taaaactgcg cgtacgattt
     2281 cgaagtatag accaaaatct gacattatcg cagtaacacc attcgaaaca acagcgcgtc
     2341 aatgtacact tgtatggggt gtatatccag ttgttcgtga aggtaacttt actacagatg
     2401 aattattgaa caattctgta gcaacagcta tcgaaagcga acgtgttgaa aacggtgatt
     2461 tactcattat catagcaggt gtaccaacag gtgaatctgg tacgacaaac ttgatgaagt
     2521 tacatcttgt cggtgaagac ttagcaagtg gtcaaggtat tggtcgtaac tcagcagtag
     2581 gtcgtacagt cgttgtcaac aatggttcgg aattaaaagg tcgcgactta gaccaagctg
     2641 ttatcgtgac accatcaatt gacgaaagca ttatcccata tttagatcag gctgtagctt
     2701 tagttactga agaagctggc ttaacttctt caagtgctat cattggactt gaaaaaggta
     2761 ttccaacagt tgtaggtgtc aacaatgtcg ttgatacaat tcctgataac gcattagtta
     2821 cagtagatgc gacgcaaggt agagtttatg aaggttatgc aaacgtacta taatttttaa
     2881 atagatgata cgatattaat tttaaaaggg ttggtaaggt gaatacgcct tatcgccctt
     2941 ttttaaatgt aacgttaaac aattttctgg ataatagtac gactttgggt gtaaaaagag
     3001 tttaattaca c
//
LOCUS       DANHOL010000201         2989 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.204, whole genome shotgun sequence.
ACCESSION   DANHOL010000201 DANHOL010000000
VERSION     DANHOL010000201.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 2989)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2989)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2989
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.204"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            188..805
                     /locus_tag="PTC08_002263"
     CDS             188..805
                     /locus_tag="PTC08_002263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF47 domain-containing protein"
                     /protein_id="HDK5683721.1"
                     /translation="MIRKKKDKFMERLEDMIFNLDRAAIEFGKMDFNTHLDLRAYADN
                     VKTYESHGDELMHQVITDLNQTFITPIEREDIMSLCNAIDDVLDAMEETSAMFEMYSI
                     EYTDEYMLEFVDNIQKAIGEMKLAIGLMTEKKLSHMRVHSINIKEYETNCDGILRQSI
                     KHIFNSETDPVTLIKIKDIYESLENIADRCQAVANNFETIIMKNS"
     gene            820..1821
                     /locus_tag="PTC08_002264"
     CDS             820..1821
                     /locus_tag="PTC08_002264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic phosphate transporter"
                     /protein_id="HDK5683722.1"
                     /translation="MEFLLLITVAIIIFSLLFDFINGFHDTANAVATAVSTRALTPRQ
                     AIFLAAIMNFIGALTFTGVASTITKEIVDPFTLDNGLIVVLSAILAAIVWNLVTWFYG
                     IPSSSSHALIGAIAGAAIASAGSVDVLHYQGFTKIVLVLILSPVIAFVVGFVMYTLVK
                     RVFRNANLTRTNRNFRIFQIFTASLQSFSHGTNDAQKSMGIITMALIVANMQTSVEPA
                     LWVKVACAAAMGLGTAVGGWKIIKTVGGNIMKIRPANGASADLASALTIFVASSLHFP
                     LSTTHVVSSSILGVGSSNRIKGVHWNTAKRMIVTWVITLPISALIAGTFYFILNLFL"
     gene            complement(2081..2908)
                     /locus_tag="PTC08_002265"
     CDS             complement(2081..2908)
                     /locus_tag="PTC08_002265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HDK5683723.1"
                     /translation="MKKLAFACTLTSGAAAVAMLNHQDADASTQYTVQSGDSLWSIAQ
                     KYGTTVDALKQSNQLQNNMVFPGQVLSIGGGSGAQSSATVPQQTGGTYTVQAGESLNV
                     IATKYGVSVQDLMRANGLTNYLIHPNQQLQIPGGNGGNTAPKTGGAGGTGSISTSGQY
                     NTPTFNHQNLYDWGQCTYHVFDRRAQIGQPISTYWWNADHWAANAAADGYTVDHNPTT
                     GSIMQNFEGPVGHVAFVERVNYDGSILISEMNYNTPPGQQDYRTIPASIASSYNYIH"
BASE COUNT          888 a          516 c          632 g          953 t
ORIGIN      
        1 tgctattttc gaataggatt atgaaaaaat gtgaaaacat tgagcactaa taaaattgaa
       61 agttaaaaag gtgatgttgc ctgcacgtta tattttgagt taacaaagga ttaacaatat
      121 tttataatta aagtaacata acttttacaa tagtgattta ggtaatcgct gaatggagga
      181 ttttaacatg attaggaaga aaaaggataa gttcatggag cgtctagagg atatgatttt
      241 caatttagac cgagctgcaa ttgaattcgg taaaatggat ttcaacaccc atttagattt
      301 gcgagcttat gccgacaacg tgaagacgta tgaatcacat ggtgacgaat tgatgcatca
      361 ggtgattaca gacctcaatc aaacatttat tacaccaatt gaacgtgaag acattatgtc
      421 gttgtgtaat gcgattgatg acgtcttaga tgcgatggaa gaaacgtccg ctatgtttga
      481 aatgtactca atagaataca cagatgaata catgttagag tttgtagata atattcaaaa
      541 agcaatcggg gaaatgaaat tagcaattgg cttaatgaca gagaaaaagc tttcacatat
      601 gcgtgtacac tcaatcaata ttaaagaata cgaaacgaat tgtgatggta ttttacgtca
      661 atccattaaa catatcttta atagtgaaac agaccctgtc actttaatta agatcaaaga
      721 catttatgaa agtttagaaa atattgctga ccgctgccaa gctgttgcga ataattttga
      781 aacaatcata atgaaaaata gctaagggag tcctcattta tggagttttt gttgcttatt
      841 acagtagcta tcattatctt ttcgttatta tttgatttta ttaatggctt tcacgataca
      901 gcgaatgccg tagcgacagc agtatcgacg cgtgcgttaa caccaaggca agccattttc
      961 ttagcggcca ttatgaactt tattggtgcc ttgacattta caggtgtggc ttcaacgatt
     1021 acaaaagaaa ttgtggatcc atttacttta gacaatggtc tcatcgttgt attatccgcg
     1081 atattagctg caattgtgtg gaatttagtc acttggtttt acggtatacc gagttcgtct
     1141 tcacatgcgt taatcggtgc aattgctggt gcggcgattg cttctgcggg gtcagttgat
     1201 gtcttacact atcaaggttt tacaaaaatc gtgcttgttt taattttatc acctgtgatt
     1261 gcgttcgttg taggttttgt catgtatacg cttgtcaaac gtgtatttag aaatgcgaat
     1321 ttgacacgta cgaatcgtaa cttccgtatt ttccaaattt tcactgcgtc tttacagtcg
     1381 ttctcacacg ggacgaatga tgcgcaaaag tcaatgggta tcattacaat ggcgttaatc
     1441 gtagcgaata tgcaaacaag tgtcgagcca gcattatggg taaaagtagc ctgtgctgct
     1501 gcaatgggct taggtacagc agtcggtggt tggaaaatca ttaaaacagt cggtggcaat
     1561 attatgaaaa tccgtcctgc aaatggggcg tcagcagact tagcatcagc gttaacaatc
     1621 tttgtcgcat catcgttaca tttcccattg tcaacaacac acgttgtttc atcttcaatt
     1681 ctcggtgtgg gctcatcgaa tcgaattaaa ggtgtgcact ggaatacagc gaaacgtatg
     1741 attgtgacat gggtgattac tttacctatt tctgcattga ttgccggtac tttttacttc
     1801 attttaaatt tattcttata acgataacta tataagcaag gagctgagat gtatgtcttg
     1861 gcttcttttt gatgccaatt attttgggga atagtacaaa gttcttgttt gtgacaaagg
     1921 tgtcgtcgtg ttgctctggc aaagagggtg cgcttctcac aaacgtcgca cagactttga
     1981 caaactataa aaacacaatg tgcattttcg ttaattgggg aataaaaaaa gattaactaa
     2041 tgatgtacga aaacacctta gttaatctct ttttacaata ttaatgaata taattgtatg
     2101 atgaagcaat tgatgctggg attgtacgat aatcttgttg tcctggtggc gtattgtagt
     2161 tcatttctga aattaaaata ctaccatcat agttcacacg ttcaacaaaa gcaacgtgac
     2221 ccacaggacc ttcaaagttt tgcataattg aacccgttgt tggattatgg tctactgtat
     2281 aaccatctgc tgcggcatta gctgcccaat gatcagcgtt ccaccaatac gtactaatag
     2341 gttgaccgat ttgtgcacga cgatcaaata catgatacgt acattgaccc cagtcgtata
     2401 agttttgatg gttaaatgta ggtgtattgt attgaccgct tgttgagata ctacctgtac
     2461 cgccagcacc acctgttttt ggtgcagtgt tgccaccgtt gccaccaggg atttgaagtt
     2521 gttggttagg atggattagg tagttcgtta atccgttagc acgcattaaa tcttgaacag
     2581 acacaccata ttttgtggca atgacattta aagattcgcc agcttgtaca gtgtatgtgc
     2641 ctccagtttg ttgcggtact gtcgcagaag attgtgcacc actaccgccc ccgatagata
     2701 agacttggcc agggaagacc atgttgtttt gtaattgatt ggattgctta agtgcatcaa
     2761 ctgttgtgcc atatttttgc gcgatggacc aaagtgaatc accagattgg actgtgtatt
     2821 gtgttgacgc gtcggcatct tgatgattga gcatagcgac ggctgccgca cctgaagtca
     2881 acgtacatgc aaatgcgagt tttttcaatg tattgcctcc ttatttacac gaatgataag
     2941 atgtgttgag caatgaataa cgaaatgtgt aatttgatta ttaattcaa
//
LOCUS       DANHOL010000202         2961 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.205, whole genome shotgun sequence.
ACCESSION   DANHOL010000202 DANHOL010000000
VERSION     DANHOL010000202.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 2961)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2961)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2961
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.205"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(32..784)
                     /locus_tag="PTC08_002266"
     CDS             complement(32..784)
                     /locus_tag="PTC08_002266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HDK5683724.1"
                     /translation="MNKYERLDEIARRVNEKGTIRITDIVEDLNVSDMTVRRDLIELE
                     EQGILTKIHGGARSNKASQYKEMSHREKHTRKSEEKLEIAKKAAKLIEDGNVIFLGPG
                     TTVEMLAKEIDNQRLSIVTNCLPVFQILEHKRSEQFSVYLIGGSKRQLTESFVGEMAN
                     TLLEKMRFSKIFFSANGIKGNDVMTSSYEEAYTQNLAIKHSNEKYILADDSKIGKEDF
                     VSFCELKDLTAIVTNTLNNDQLQYLQKFIEII"
     gene            1090..1635
                     /locus_tag="PTC08_002267"
     CDS             1090..1635
                     /locus_tag="PTC08_002267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine hydrolase"
                     /protein_id="HDK5683725.1"
                     /translation="MTKHGLLVIDVQNDYFKGGKMALHQPDKALRNIQQLEQDFSAKH
                     LPIIYIQHINTKPNPTFFEADTEGVALHSELAVQPESIIIEKHFPNSFFQTELQETLQ
                     QHDIDTLVICGMMTHMCVDSTTRAASELGYNPILIHDATATKALSFTGHDVDASDVQH
                     ALIASLTNFSTVMSTDEWLEL"
     gene            complement(1744..2646)
                     /locus_tag="PTC08_002268"
     CDS             complement(1744..2646)
                     /locus_tag="PTC08_002268"
                     /inference="COORDINATES: protein motif:HMM:NF019976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NERD domain-containing protein"
                     /protein_id="HDK5683726.1"
                     /translation="MVIVIIILMITILGLVFVLKRTNAMVKEEMHKRMAIEQQYEKKL
                     EQKETEVDTHIQTLESYQLSKGEIETDFKQLEKNYIQLKETLNKHKIFSNNIGEVMAS
                     RDLSHIFESYKSRGIVNQYHIIDNILFSDENVRQIDHVVVCDYGIFMIETKTWKGDIF
                     YNTNKEALQGTAYRFLEKYLFNDKFEKAYKTFVLKSDKDGKFEVLDYGNPYQQVRQSI
                     YKVYHYFNKKYYVNGLVYFNYKAEADHYIFFDGSEENNPIKAVNQIEHLVAYFDDKIK
                     NSKKYMNADDINAVATKLKENMML"
BASE COUNT          922 a          603 c          375 g         1061 t
ORIGIN      
        1 ggttgtcgta gtccttttca ttaattcatt attaaataat ctcaataaac ttttgtaaat
       61 actgcaactg atcattgttc aaagtattcg ttacaatcgc agttaaatct ttcaattcac
      121 aaaatgatac aaaatcctct ttgcctattt ttgaatcatc agctaaaata tatttttcat
      181 ttgagtgctt aatagctaag ttttgtgtat aggcttcctc ataagatgac gtcatcacat
      241 cattcccttt aatcccattt gcactaaaaa atatttttga gaagcgcatt ttttctaaca
      301 atgtattggc catctcacca acaaatgatt ctgttaactg tctttttgaa ccaccgatta
      361 aatacacaga aaattgttct gaacgcttat gttctagaat ttgaaaaaca ggcaaacaat
      421 tagtcacgat agataggcgt tgattatcga tttctttcgc taacatttca actgttgtac
      481 caggacctag aaaaataaca tttccatctt caatcaactt tgccgctttt ttagcaattt
      541 ctaacttttc ttcacttttt cgggtatgtt tttcacggtg agacatctct ttatattgag
      601 aagctttatt acttctggca cccccatgta ttttcgtcaa tatcccttgt tcctctaatt
      661 cgattaaatc ccgtcttaca gtcatatcgg acacattcaa gtcttccaca atatccgtaa
      721 tacgtattgt acctttttcg tttactcgac gtgctatctc atctagtcgt tcatatttgt
      781 tcaaacattt cacaccttta atatctaact attttatatt gattatacgt caatttaaca
      841 tattcaaact tgtattatca taaccatact acaaaatgtt caaaaaacaa acaaaaatag
      901 ttttccaaac aaattcaaac ataaataagt cgatagtgta gtaatacttt cgttagtcat
      961 caatggagtg gattcgactt aaattcacct gttaatcagc gctttgtgat tgtctagagt
     1021 aaaacgtatc attttaactt tatgaaacgc tgatgtatga taaatcataa taactaagga
     1081 gggacagcca tgacaaaaca cggtttatta gtcattgatg ttcaaaatga ttatttcaaa
     1141 ggagggaaaa tggcgctcca tcaacccgat aaagcactga gaaatattca acaacttgaa
     1201 caagatttta gcgcgaaaca tttgcctatc atctatatcc agcacatcaa tacgaaaccc
     1261 aacccaacat tttttgaagc agacacagaa ggcgtggcat tgcactctga attagcagtt
     1321 caaccagaaa gtatcattat cgaaaaacat tttccaaata gcttttttca aacagaactt
     1381 caagaaacac ttcaacaaca cgatattgat actttagtga tttgtggcat gatgacacat
     1441 atgtgtgtgg attcaacgac tagagccgct tcagaactcg gttacaaccc gatactcatt
     1501 catgatgcta cagcgacaaa agctttatcg tttactggtc atgatgtcga tgctagtgac
     1561 gtacaacacg cattgattgc atccttaacc aacttttcaa cggtcatgtc cactgacgaa
     1621 tggctcgaat tatagtgcac gagatccaat aaaccatggc acgccacata caaaaagtag
     1681 gaaaatagca tttccattct gccattttcc cactttttat aatcgctgtt ataagtcatt
     1741 atcctatagc atcatatttt cttttaactt tgttgcgact gcgttgatat catccgcatt
     1801 catatatttc ttgctgtttt taattttatc atcaaagtac gctaccaaat gttcgatttg
     1861 attaacggcc ttaattggat tattttcttc tgaaccatca aagaaaatat aatggtctgc
     1921 ctccgcttta taattaaaat agactaatcc attcacataa tactttttgt tgaagtaatg
     1981 atacacctta taaatagact gtctgacttg ttgatagggg tttccataat ctaatacttc
     2041 aaatttacca tctttatcag acttaagtac aaaagtttta tatgcttttt caaacttatc
     2101 attaaacaaa tatttctcta aaaatctata tgctgtccct tgcaatgctt ccttattggt
     2161 attataaaat atatcccctt tccaagtctt tgtttcaatc ataaatatcc cataatcaca
     2221 aaccaccaca tgatcgattt gccttacatt ctcgtcactg aaaaggatat tgtctataat
     2281 atgatattga ttcactatcc ccctagattt ataagattca aaaatatgag acaaatctct
     2341 tgatgccatc acttcaccga tattatttga aaaaatctta tgcttgttaa gtgtctcttt
     2401 taattggatg taatttttct ctaactgttt aaaatctgtt tcgatttcac ctttactcaa
     2461 ttgataactt tccaacgttt gaatatgcgt gtcaacctca gtttctttct gctctaattt
     2521 cttttcatat tgttgttcga ttgccattct tttatgcatc tcttctttta ccatcgcatt
     2581 tgttcttttt aagacaaata ctaaaccaag aatcgttatc atgagtatga ttatgacgat
     2641 taccatacca ctcacctcat cagtcaatta tttttccccg tgcgcattct ctatttaatt
     2701 gtgccccatt tttatatcca tactgaacta cttttattca acatttttta atccatgtca
     2761 tgccatcatt gcatgaacac acagtgtcat ttttattggg tacaaaatct ttaaatgtat
     2821 acgtacatat catgtcgtta cttataaaca cgaacccaat cccaaataag tcgtctctat
     2881 caatataaat gatttcatca ctttagtttt tcacccatac ccacttccat cctaatcatt
     2941 ttatgacatc tctttatttt t
//
LOCUS       DANHOL010000203         2892 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.206, whole genome shotgun sequence.
ACCESSION   DANHOL010000203 DANHOL010000000
VERSION     DANHOL010000203.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 2892)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2892)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2892
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.206"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            42..845
                     /locus_tag="PTC08_002269"
     CDS             42..845
                     /locus_tag="PTC08_002269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001273058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDK5683727.1"
                     /translation="MNSVITVMKEHFKSFYLIQRLAQFQLKISNHNNYLGFAWEIINP
                     VIQIMVYWFVFGFGIRSNHPIDGVPFIYWLLVGISMWFFINQGILEGTKSITMKYGQV
                     AKMNFPLSIIPTYIVTSKLYGHIMLVVAIVILCTVSGMTPTIYILQLFIYIPFAFCLT
                     ASVTLLTSTLGVLVRDTQMAMQALLRVLFYASPILWTPPAGSLAEKILMFNPIYFVAE
                     SYRAAILFHEWYFITHWELALYNVCVTAMLFIIGSMLHMRYRDHFADFM"
     gene            920..2011
                     /locus_tag="PTC08_002270"
     CDS             920..2011
                     /locus_tag="PTC08_002270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-glycerol glycerophosphotransferase family
                     protein"
                     /protein_id="HDK5683728.1"
                     /translation="MMRYYIKAFYICMVACLSRLYSALRIDRKHIVFLMTFKEDQLPI
                     IYQLSQRGFNITVFAKPKDFYYLENRKQITYYPLKQSSILKQLAALATAKVVFIDTYY
                     LIMAGWRKKEGQTVIQTWHAAGALKKFGLEDHSVDLTQKEHVDQYCAVYQATDKYLVG
                     GQQMADCFEKAFGARYEQLLSFGSPRLTTYRHIDRHAHQQKLKKQLGIQNKVAVYLPT
                     YREGGQTNRTIDKETFETAVPGYTLLSKYHPTVSAAAENIKMCTLDLIVLADLIITDY
                     SSLAIEASIVNTPTLFYVYDEADYEIVRGLNKYYYDIPQEYKAYDERTLYERINEGQL
                     QPLFQKWHQYNTSESLNQVVNYVEKLVRI"
     gene            2105..2503
                     /gene="tagD"
                     /locus_tag="PTC08_002271"
     CDS             2105..2503
                     /gene="tagD"
                     /locus_tag="PTC08_002271"
                     /EC_number="2.7.7.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate cytidylyltransferase"
                     /protein_id="HDK5683729.1"
                     /translation="MKRVITYGTYDLLHYGHIELLRRAREMGDYLVVALSSDEFNRIK
                     NKKSYYNFEQRKMMLESIRYVDLVIPENDWGQKETDVEKYEIDTFVMGHDWEGEFDFL
                     KDKCEVIYLKRTEGISTTQIKQELYGKDAK"
BASE COUNT          931 a          471 c          573 g          917 t
ORIGIN      
        1 gctctagatg gattatctag catgtgaaag cgtggtaaat tatgaattct gttattaccg
       61 taatgaaaga acattttaag agtttttatc tgattcagcg gttagcacaa ttccagctta
      121 agatttcaaa tcataataac tatctcggat ttgcttggga gatcattaat cctgtgatac
      181 aaattatggt ttactggttt gtcttcggtt ttgggatcag aagtaaccac ccgattgatg
      241 gcgtcccttt tatttattgg ttgctcgtcg gtattagtat gtggttcttc attaatcaag
      301 gtattttaga gggaacaaaa tcgataacca tgaaatatgg acaggtggcg aaaatgaact
      361 tcccactttc tatcattccg acatacatcg tcacaagtaa actgtatggg cacattatgc
      421 ttgtggtagc gattgtcatt ttgtgtacag tgagtggtat gacaccaacg atttatattc
      481 ttcaactgtt catttatatc ccgtttgcgt tttgtttgac ggcatcagtg acgctcctaa
      541 catcaacatt aggcgtgctt gtccgtgata cgcaaatggc aatgcaagct ttattaaggg
      601 ttcttttcta tgcttcaccg attctttgga cgcctccagc aggatcgtta gcagaaaaga
      661 ttttaatgtt taaccctatt tattttgtag cggagagtta ccgtgctgcg atactatttc
      721 atgaatggta ctttattacg cattgggaac tagcacttta caatgtgtgc gttacagcga
      781 tgttatttat tattggttcg atgttacata tgcgctacag agatcacttc gcagatttta
      841 tgtaatgaga acagtccctc aatacattag atttgtgttg agggttttgt tttaaataac
      901 attttagggt ggtgaagaaa tgatgcgtta ttatatcaaa gcattttata tttgtatggt
      961 tgcgtgttta agtcgactgt acagtgcgtt acgtatcgat agaaaacata ttgtcttttt
     1021 aatgactttt aaagaagatc aattaccaat tatatatcaa ctgagtcaac gcggttttaa
     1081 cattactgtt tttgcaaagc ctaaagattt ttactattta gaaaatagaa agcagattac
     1141 gtattatcct ttgaaacaat cttctatttt aaagcagtta gccgcattag ctaccgcaaa
     1201 agtggtgttt attgacacat attatttaat tatggcaggg tggcgcaaaa aagaaggcca
     1261 aaccgtcatt caaacgtggc atgcggcagg tgcattgaag aagtttggtt tagaagatca
     1321 ttcagtagat ttgactcaaa aagaacatgt ggatcaatat tgtgcagtgt atcaagcgac
     1381 cgataaatac ttagtcggtg gtcaacagat ggcagattgc tttgaaaagg cgttcggggc
     1441 acgttatgaa cagctgctca gttttgggag tccgagatta acgacatacc gacacatcga
     1501 ccgacatgcg catcagcaaa aacttaaaaa acaattaggt attcaaaaca aagtcgctgt
     1561 ctatttaccg acttatcgtg aaggcgggca aacgaaccgt acgattgaca aagaaacatt
     1621 tgagactgcg gtgcctggct acacgttgtt aagtaaatat catcctactg tttccgcagc
     1681 ggcagaaaat attaaaatgt gtacgcttga tcttatcgta ttggcagatt taattattac
     1741 ggattacagt tctttagcga tagaagcaag cattgtcaat acgccaactt tattttacgt
     1801 atatgatgag gcggattatg aaatcgtacg agggctcaac aagtattatt atgacatccc
     1861 gcaagaatat aaagcgtatg acgagcgcac attgtatgaa cgtatcaacg aaggtcaatt
     1921 acaaccatta ttccaaaaat ggcatcaata taatacaagt gaaagcttaa atcaagtggt
     1981 caactatgta gaaaaactcg tgagaattta gcgtaaacac tggatatttt taggaattga
     2041 gaaatgttta tgctataatt ctacaaaatg aagaaaatat taaacatgtt aaggaggtgt
     2101 aaagatgaaa cgtgtcatta catatggaac gtatgatctt ttacactatg gacatattga
     2161 attactaaga cgtgcacgtg aaatggggga ttacctcgtt gtagcactct caagtgatga
     2221 attcaaccgc attaaaaaca aaaaatcata ttacaatttt gaacaacgta aaatgatgct
     2281 tgaatcgatt cgttacgttg accttgtcat tcctgaaaac gattggggcc aaaaagaaac
     2341 cgacgttgag aagtatgaaa tcgatacatt tgtaatgggg catgattggg aaggcgaatt
     2401 tgatttctta aaagataaat gtgaagtgat ttacttgaaa cgtacggaag gtatttctac
     2461 aacacaaatc aaacaagaat tatacggtaa agacgcaaaa taatgggaat aatcgagtag
     2521 aagaatagcc aattaacggc tattcttcta ctcgattttt ctaaaatata taatcatatc
     2581 ttaactaaac tctagaatgg agcttgtttg attgagacat gatatacacg gaggagtgtt
     2641 attttacatt gtgaaaggca taaaaccata ttaagctgag gtagctagac aatatcatct
     2701 tatatcaaat tatttatcaa tataaatcta tttttccttt gttcatcagt taacggcaca
     2761 tgatcaacat caacttctgt gaacaaagtc caaggtaaat gtttttcatt tgcatatttt
     2821 acagcctcca atgtatctcg ataattcagt acactatcgt tgtcaccttg gataatgtaa
     2881 acttcggttt ta
//
LOCUS       DANHOL010000204         2872 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.207, whole genome shotgun sequence.
ACCESSION   DANHOL010000204 DANHOL010000000
VERSION     DANHOL010000204.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 2872)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2872)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2872
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.207"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            124..360
                     /locus_tag="PTC08_002272"
     CDS             124..360
                     /locus_tag="PTC08_002272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF896 domain-containing protein"
                     /protein_id="HDK5683730.1"
                     /translation="MLSKEKLNRINELANKKKSEGLTETEAKEQSQLRSEYLEVFRSS
                     FKSQIENTKVIDPDGNDVTPEKLKEVQKQNQLRS"
     gene            465..2450
                     /gene="tkt"
                     /locus_tag="PTC08_002273"
     CDS             465..2450
                     /gene="tkt"
                     /locus_tag="PTC08_002273"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HDK5683731.1"
                     /translation="MSQRNDSLAINTIRGLSIDAIEKANSGHPGLPMGAAPMAYTLWT
                     RHLNFNPKSHEYFNRDRFILSAGHGSALLYSLLHVSGSLELDELKQFRQWDSKTPGHP
                     EYHHTQGVEITTGPLGQGFAMSVGMAMAEKHLAAKFNKDIDVVDHYTYVLASDGDLME
                     GISHEAASLAGHLKLDKLITLYDSNDISLDGEASKAFSEDIKKRFEAYGWNHILVKDG
                     NDIEAIDKAIEEAKGQAGPTIIEVKTIIGYGSPNKSNSNASHGAPLGEEERNLTFESY
                     NLDPSKHFHVEDEVYDIFNSTMIQRADENEKAWKEKVEQYAEKYPELYKEFEDAMAGK
                     LPEGYENELPKFELGHKGASRADSGDVIQALSKAVPTLFGGSADLASSNKSNVKNETD
                     FSAENGVGKNVWFGVREFAMAAAVNGMAAHGGLHPYGATFFVFSDYLKPALRLAAIMG
                     LRSTFVFTHDSIAVGEDGPTHEPIEQLAGLRAIPNLNVIRPADGNETRVAWKVAVESN
                     GTPTALVLTRQGLPVLDVEESTVEEGVRKGAYVVFETEKSPEYVLLASGSEVSLTVDV
                     AKALEEQGKGVRVISMPNWNAFENQSKAYQDEILLPHVEKRAAVEMAASLGWHKYVGM
                     NGVVVGIDRYGASAPGDLVVEKYGFTKDNVLAEIEKL"
     gene            2608..2835
                     /locus_tag="PTC08_002274"
     CDS             2608..2835
                     /locus_tag="PTC08_002274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015900233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YneF family protein"
                     /protein_id="HDK5683732.1"
                     /translation="MATWLAILLIVIALIGGLVGGFFLARKYMMDYLKKNPPINEEML
                     RMMMMQMGQKPSQKKINQMMTMMNKNMDKKM"
BASE COUNT          992 a          465 c          596 g          819 t
ORIGIN      
        1 agtgttagct tggaataacg ctcaaacaat gacagcgctt acttttatgc tgagttcaag
       61 catttggttt tataacattt ttctgttata tttttgtaaa gaaaatcacg gaggggagct
      121 catatgctta gtaaagaaaa gttaaatcga attaatgaac tcgcaaataa gaaaaaaagt
      181 gaaggcctta ctgaaacgga agcaaaagaa caatctcaat taagaagtga gtatttagaa
      241 gtatttagaa gcagttttaa aagccaaata gaaaacacaa aagtgataga tccagatggc
      301 aatgacgtaa cgcctgagaa attaaaagaa gttcaaaagc aaaatcaatt acgtagttag
      361 tatttttgaa cataatggat aacgcggtgc catttattag gtttcagaca gtgtttcggt
      421 tataatgtaa ttatgatatg gaatcagaaa ggaaggattt tcaaatgagt caacgaaatg
      481 atagcttagc tataaataca atacgtggat taagtattga tgctattgag aaagcgaatt
      541 caggtcatcc tggtttacca atgggggcag caccaatggc atatacttta tggacacgcc
      601 atttaaactt taatccaaag tcacatgaat atttcaacag agaccgcttt attttatcag
      661 caggtcacgg atcagcattg ctttatagtt tattacatgt gtctggttca ctcgaacttg
      721 atgagttaaa acaatttaga caatgggatt ctaaaacacc tggacaccca gaatatcacc
      781 acacacaagg tgtagaaatt acgactggac cacttggaca aggttttgcg atgtcagttg
      841 gtatggcaat ggctgaaaaa catttagctg ctaaattcaa caaagatatc gacgttgttg
      901 atcactacac ttatgtattg gcatctgacg gtgacttaat ggaaggtatt tcacatgaag
      961 cagcttcact tgcaggtcat ttgaaattag acaaattgat tacactttat gattcaaacg
     1021 atatttctct agacggggaa gcttcaaaag cattctctga agatattaaa aaacgttttg
     1081 aagcttatgg ttggaaccac attcttgtaa aagacggtaa cgacattgaa gcgattgata
     1141 aagcgattga agaagctaaa ggtcaagctg gtccaacaat cattgaagtg aaaacaatca
     1201 ttggttacgg ttcacctaac aaatctaata gtaacgcgtc acacggtgcg ccacttggtg
     1261 aagaagaacg taacttaaca ttcgaaagct ataaccttga tccatctaaa cattttcatg
     1321 ttgaagatga agtttatgac attttcaatt caacaatgat tcaacgtgcg gatgaaaatg
     1381 aaaaagcatg gaaagaaaaa gtggaacaat acgctgagaa ataccctgaa ttatacaaag
     1441 agtttgaaga tgctatggca ggtaaattac ctgaaggcta tgaaaatgaa cttcctaaat
     1501 ttgaacttgg tcacaaaggg gcttctcgtg cagactctgg tgatgtgatt caagcgttaa
     1561 gtaaagccgt accaacatta ttcggtggtt cagctgactt agcttcatca aataaatcaa
     1621 atgttaaaaa cgaaactgac ttctctgctg aaaatggcgt tggtaaaaac gtatggttcg
     1681 gtgtacgtga attcgcaatg gcagcagctg ttaacggtat ggctgcacac ggcggtttac
     1741 acccatatgg tgcgacattc ttcgtattca gtgactattt aaaaccagca ttacgtttag
     1801 cagccattat gggcttacgt tcaacattcg tattcacaca tgactcaatt gctgtaggcg
     1861 aagatggtcc gactcacgaa ccaatcgaac aattggctgg tttaagagcg atccctaact
     1921 taaacgttat tcgtccagct gatggtaacg aaacacgtgt tgcatggaaa gtcgctgttg
     1981 aatcaaacgg cacaccaact gcattagtat taactcgtca aggtttacct gtattagatg
     2041 tggaagaatc tacagttgaa gaaggcgtaa gaaaaggtgc ttacgttgta ttcgaaactg
     2101 aaaaatctcc agaatacgtt ttattagcat ctggttcaga agtgagctta acagtagacg
     2161 ttgctaaagc acttgaagaa caaggtaaag gtgtacgtgt catttcaatg ccaaactgga
     2221 acgcatttga aaatcaatca aaagcatacc aagatgaaat tttattacca catgttgaaa
     2281 aacgtgcagc tgttgaaatg gcagcttcat taggttggca taaatacgtt ggtatgaacg
     2341 gtgttgttgt aggtatcgac cgttacggtg caagtgcgcc tggcgactta gttgttgaga
     2401 aatacggctt cactaaagat aatgttttag cagaaattga aaaattataa tttcctctaa
     2461 aatagtgtca aatatagcgt cgagctcgat cagtcgattt tgagctcggc ttttcttttt
     2521 agatttggta taaatttgtc ttccatatct tgaaaagcat acataatttt agtaaaatgc
     2581 aaaaggataa agaaagtggg tgaaactatg gctacatggt tagcaatttt attaattgtt
     2641 attgcactta tcggtggatt agttgggggc tttttcttag cacgtaaata tatgatggat
     2701 tatttaaaga aaaacccacc aatcaatgaa gaaatgttac gcatgatgat gatgcagatg
     2761 ggacaaaaac catctcaaaa gaaaattaat caaatgatga caatgatgaa caaaaacatg
     2821 gataaaaaaa tgtaatgttc tttaacgtta acgatagcaa ggatttgtgc tg
//
LOCUS       DANHOL010000205         2860 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.208, whole genome shotgun sequence.
ACCESSION   DANHOL010000205 DANHOL010000000
VERSION     DANHOL010000205.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 2860)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2860)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2860
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.208"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(<1..927)
                     /locus_tag="PTC08_002275"
     CDS             complement(<1..927)
                     /locus_tag="PTC08_002275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_086558064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS30 family transposase"
                     /protein_id="HDK5683733.1"
                     /translation="MTYKHLNTDELTFIESYYHQNLSVKEIAKRLKRSRQTIYNVINA
                     LKTGITALEYYQEYKQRKSNCGRHRIVLPENQSAYIREKVADGWTPDTIIGRGEHPID
                     CSVKTLYRMFKENVFSVQSLPMKGKRKPNGHCEKRGRQAFKRHISERIEEFPFFFQEF
                     GHLEGNTIIGRNHGSAVITLVERISKMIITIRPQGRKADDIEDALHSMFSALPAHIFK
                     SITFDCGKEFSNWKTICNRHDISIFFADPGTPSQRGLNEHSNGILRRSGLDKELDFNS
                     VTDDHIISVAQNINHRPRKSLGYKTPLEVFMSF"
     gene            1079..1219
                     /gene="rpsI"
                     /locus_tag="PTC08_002276"
     CDS             1079..1219
                     /gene="rpsI"
                     /locus_tag="PTC08_002276"
                     /inference="COORDINATES: protein motif:HMM:NF012598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HDK5683734.1"
                     /translation="MKFKIEEILLYQGVRQSKQLYETLKFFERKKPGLTKARRSPQFS
                     KR"
     gene            1637..>2860
                     /locus_tag="PTC08_002277"
     CDS             1637..>2860
                     /locus_tag="PTC08_002277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000204270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA binding domain-containing protein"
                     /protein_id="HDK5683735.1"
                     /translation="MTSSKYIEYLQNEVEGQLLDRKRASINPKDVAQHISAFANAEGG
                     KLVIGIEDNGEISGFNHSKAKNKEVYIEAPFEHLYRIPKYTHEIIEVKKRDGTMDEIL
                     IFDIEPSYDAIITLKDDSVYLRINDKSRKLTHNQITNLEYDRGSRRFEEELVEYSSIE
                     DVDENLVSEFKQLLDTNVDNEKLLKARGFMREGKLTVAGLLLFSNNINVYLPSARIRF
                     MRYEGTKEESGTRLNVVKDITFDKALPVAIREARAFINTQLREYTFLGKEGRFVTLPE
                     YPEFAWFEGMINAIIHRRYDNQGDHIRIKMFDDRLEISSPGVLPASVTLENIKEERYS
                     RNPKLAAALTQYKWVRESNEGVGRIFDEMKDYFLDDPVYSEPNNSSVQLTLKNNVVAR
                     KERETGRVSNIITPEL"
BASE COUNT          959 a          426 c          557 g          918 t
ORIGIN      
        1 gaaactcata aatacttcca atggtgtttt atagcccagc gattttctgg gacgatgatt
       61 aatattttga gcaacactaa taatatgatc atcagtgact gaattaaagt ctaattcttt
      121 atctaatcca ctgcgtctaa gtattccgtt agaatgttca ttcaatccac gttgcgacgg
      181 agtgccgggg tcagcaaaga atatcgagat atcgtgtcgg ttacagattg ttttccagtt
      241 ggagaactcc ttaccacaat cgaaagtaat cgatttaaat atatgagcag gtaaagctga
      301 aaacatagag tgaagagcat cttcaatatc atctgccttg cgaccttgag gtcgtatagt
      361 gataatcatc ttagagattc tttctactaa ggttatgaca gcactcccat gattacggcc
      421 aatgatagtg ttaccttcaa gatgaccaaa ttcttgaaag aagaaaggaa attcttctat
      481 tctttcagaa atgtgtcttt tgaaagcttg tctacctctt ttttcacaat gaccatttgg
      541 cttcctttta cctttcatag gtaaagattg taccgaaaag acgttttcct taaacattct
      601 ataaagagtt tttacagaac aatcaatcgg gtgttcacct ctgccaataa tggtgtcagg
      661 tgtccagcca tcggctactt tttctcgaat ataagctgac tgattttctg gaagtactat
      721 tctatgtctg ccacaatttg attttctttg cttatactct tggtaatatt ccagtgcagt
      781 tatacctgtc ttaagtgcat ttattacgtt ataaattgtc tgtcttgatc gtttcaatct
      841 ctttgcgatt tcttttaccg aaagattttg atgataatat gattctatga acgtgagttc
      901 atccgtgtta agatgtttat aggtcattct gtactaactc cttatgtttt ctttggtcgg
      961 aaatacatat tgagtttagc acagaaggct tttttagttg tctagcttaa ttttacaatc
     1021 gacgtaataa aaaattaatg ccccgttaat accctttgct ttaatttgat gaaaatcaat
     1081 gaaattcaaa attgaagaaa tacttttgta tcaaggtgta agacagtcta aacaattgta
     1141 cgaaacccta aagttttttg aacgtaaaaa accaggtctt acaaaagccc gtcgttcacc
     1201 tcaattctca aaacgttaat atcgattata tattatgttt caagacatct tctcattgcg
     1261 ggaagatgtc tttttattgt gcgcccggca tgtgtaacat cttgacggtg aaagtccgtt
     1321 acagttttgg tagtaggagc agtcacacgt ttaaagttct tgagttgtct aataaccaag
     1381 gtcaatgggg tttgtcgttt cagaccgaat acggaagcaa aaagaaattt aatacgcacc
     1441 ttaaggaaaa taacgaaatg aaatagaccc ggtaccttta aagacattat cactgaaatt
     1501 agccaagtga cgcgaggttg gataaatgac tttgggattt gtacgacaag cagatagagg
     1561 tcataatgat attcgataga tatcttattg aatgttataa taaagtcaat aagatgcgtg
     1621 attgcgaggt ttatatatga ctagtagtaa gtatattgaa tatttgcaaa atgaggttga
     1681 aggacagctt ctagatcgaa agagggcgtc tataaatcct aaagatgttg ctcaacatat
     1741 tagtgcgttt gcaaatgctg aaggtggcaa actagtaatt ggtattgaag ataatggaga
     1801 aatttcagga tttaatcatt caaaagcaaa aaataaagag gtatatattg aagcaccttt
     1861 cgaacattta tatagaatac ctaaatatac tcatgaaata atagaagtga agaaacgcga
     1921 tggaactatg gatgaaattc ttattttcga cattgaacct agctatgatg ctattatcac
     1981 cttaaaagat gattcagtat atttaagaat taatgataaa agtagaaaat tgacacacaa
     2041 tcaaattacc aatttagaat atgatcgcgg ttcacgtcgt ttcgaagaag aattggtcga
     2101 gtattctagt attgaagatg tggatgaaaa ccttgttagt gagtttaagc aattacttga
     2161 tactaatgta gataatgaaa aattattaaa agctagaggg tttatgcgtg aaggtaaatt
     2221 gacagttgca ggtttattat tgtttagtaa taatattaat gtttatttac ctagtgctag
     2281 gatccgattc atgaggtatg aaggtacaaa agaagaatct gggacaagac ttaacgttgt
     2341 aaaagatatt acttttgaca aagctttgcc agtagcaata agagaagcga gagctttcat
     2401 caatacacaa ttacgtgaat atactttttt aggcaaagag ggaaggtttg taactttgcc
     2461 ggaatatccg gaatttgctt ggtttgaggg aatgataaat gctattatac atcgcagata
     2521 tgataatcaa ggcgatcata taagaataaa aatgtttgac gacaggttag aaattagtag
     2581 cccgggtgta ttgcctgctt ctgttacgtt agagaatatt aaggaagaaa gatattcaag
     2641 gaatccaaaa ttagctgcag cattaactca atataaatgg gtgagagaat caaatgaggg
     2701 cgtgggacgt atatttgacg aaatgaagga ttatttttta gatgatcctg tttattcaga
     2761 gcctaataat agttcagtac aactaacttt gaaaaataat gtcgtagcta gaaaagaaag
     2821 agaaacaggt agagtgagta atataataac acctgaatta
//
LOCUS       DANHOL010000206         2747 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.209, whole genome shotgun sequence.
ACCESSION   DANHOL010000206 DANHOL010000000
VERSION     DANHOL010000206.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 2747)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2747)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2747
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.209"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            171..2732
                     /locus_tag="PTC08_002278"
     CDS             171..2732
                     /locus_tag="PTC08_002278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HDK5683736.1"
                     /translation="MSKKPQTKNDQLIEAVSLLQTDYLQGLSRLEETINASDVYTYLK
                     SLEKNGKLNFINQFKNELEKEKSSNGSRILKKAKYKIGIIADEFLFNSFKDTADITFI
                     SSDAEIEKLSFDFVIVATTWRGIDETWQGVASPKSRMRAHLMLLLDELIERQIPLVFY
                     SKEDPVNFHLFKDIASKCDYIFTTAQEMVQDYIEYTHNTKVKVLQFGVNPHYHNPIGT
                     RTEEAIKHKDGVIFAGSWTKKYPQRNKDLARIFDGLSLSGNDLTIFDRNLHLERERYL
                     FPSKYIPYITGPLSHDELMKVHKIFRWALNVNSVKYSETMFANRVFELQAFGNLIISN
                     YSVGVNNQFPNIFMVNDKSDVGPILNRHSDSELREFQAKNIRNVMLENTTYHRIDEIA
                     NFIGLTSASMQPVIGVVVKERTEALIEMFKRQMNVKKILLTEQELNDRIHELDFITFF
                     DENYIYEEYYLADLISAFYYTDVDFVQKVLTTDYQVHDYTDTYHDKYLTLFDAQAYQS
                     GDYQIGYTLDDAELFYNEKQILSKNDLVSVIVPIHNNGRYLEDKCMRSLRRSSLFNRF
                     EIIFVDDGSTDEETRHVIQRLRRKYPNIVYYRFESGSGSASRPRNKGVELASTPYITY
                     LDPDNEAIGDGYAQLYEKLKEDSSLDMVIGNIIKEDNRKRSVFNYHGTIKKYNNDNAL
                     ITNTKKFLKNAGLRAQSIQALMVKANVIKNNNIKMVEGAAGQDTVFFQELMLYSKKVL
                     GIKVPIHMYYAAVSGSVTNSISKKLFDKYYKLELERIPFLEQHHLMDAYMEQRFNLYV
                     KGWYKPRLDIVKSEEREEAVKRFLDIYHLYEKYERPHDVELDDYIKTLKKEVKHL"
BASE COUNT         1018 a          375 c          520 g          834 t
ORIGIN      
        1 tatattaact gcattagtca atgacaagat taataatgaa tcgaacacta accctgatca
       61 aattgagggt aaaagtaata tctatacacg atatcaaaat ttaaaaaact caaaactagg
      121 taaactgcag attaaatatt ggaatatgag aaaaaaatgg gggaagtaac atgtcaaaaa
      181 aacctcaaac gaagaacgac caactgattg aagcggtcag tttactgcaa actgactatt
      241 tacaaggttt aagtcgatta gaagaaacaa tcaatgcaag tgatgtttat acgtatttaa
      301 aatcattaga aaaaaatggc aagttgaatt ttatcaatca gtttaaaaat gaattagaaa
      361 aagaaaaatc tagtaacggt tcgcgaattt tgaaaaaagc caagtataaa attggaatca
      421 ttgccgatga gttcttattc aattcattta aagatacagc ggatattact tttatttcga
      481 gtgacgcaga gattgaaaaa ctgagctttg attttgttat cgtggcaacg acatggcgag
      541 gaattgatga aacttggcaa ggtgtagcaa gtcctaaaag tagaatgcgt gcacatctta
      601 tgctgttatt agatgaatta atcgaacgtc aaattccatt agtattctat tcaaaagaag
      661 atcctgttaa ttttcatttg tttaaagata tagcgagtaa atgtgattat atttttacta
      721 cagcacaaga aatggttcaa gattatattg aatataccca taatacaaaa gttaaagttt
      781 tacaatttgg tgtaaaccca cattatcata atccaattgg aacaagaact gaagaagcga
      841 taaaacataa agatggagtg atattcgctg gtagttggac aaaaaaatat cctcaaagaa
      901 ataaagactt agcacgtatt tttgatggat tgagtttaag tggtaacgat ttaacaatct
      961 ttgatcgaaa tttacatctt gaaagggaaa gatacttatt tcctagtaaa tacattccat
     1021 atattaccgg tccattgagt catgatgaac taatgaaagt acataagatt tttagatggg
     1081 cactgaacgt caattctgtg aagtattccg agacgatgtt tgcgaatcgt gtctttgaat
     1141 tacaagcatt cggaaatttg attatttcta attattcagt aggtgtgaac aatcaatttc
     1201 ctaatatatt tatggtgaat gataaatctg atgtaggacc tattttaaac cgacattcgg
     1261 acagtgaatt aagggagttt caagcaaaga atattcgcaa tgtgatgttg gaaaatacga
     1321 catatcaccg aattgacgaa attgctaact tcatcggttt aacaagcgct tctatgcaac
     1381 ccgtaatcgg tgttgtagtg aaagaaagga cagaagcttt aattgaaatg tttaagcgtc
     1441 aaatgaatgt gaagaaaata ttgctgaccg aacaagaact gaatgatcgt atacatgagt
     1501 tggattttat tacatttttt gatgagaact acatttatga agaatattac ttagctgatt
     1561 taatcagtgc gttttattac acagatgtcg attttgttca aaaggtgtta accaccgact
     1621 atcaagtgca tgactatacc gatacgtatc atgacaaata tttaacttta tttgatgctc
     1681 aagcttatca atcaggggac tatcaaatcg gttatacatt agatgatgcc gaattatttt
     1741 acaatgaaaa gcaaatttta agtaaaaatg atttagtcag tgtaatcgta ccaattcata
     1801 ataatgggcg ctacttagaa gataagtgta tgcgtagttt gagacgatct tctttgttca
     1861 acagatttga aattattttt gtcgatgatg gttcaactga cgaagaaacg cgtcatgtta
     1921 ttcaaagatt aagacgaaaa tatcctaata tcgtttatta tcgatttgaa tctggctcag
     1981 gtagtgcttc gagaccaaga aataaaggtg tggaactcgc ctctacacca tacattacgt
     2041 atttagatcc tgataatgaa gcgataggtg atggatacgc acaactgtat gaaaaattaa
     2101 aagaagattc atctcttgat atggtcatag gtaatattat taaagaggac aatcgtaaaa
     2161 gatccgtctt taattatcac ggtacgataa aaaagtataa taacgacaat gcattaatca
     2221 caaatacaaa aaagtttttg aaaaatgcag ggttacgggc tcaaagtatt caggccttaa
     2281 tggtcaaagc gaatgtcatc aaaaataata acattaaaat ggttgaaggt gcagcagggc
     2341 aagacaccgt attctttcaa gagttgatgt tatattctaa aaaagtattg ggcatcaaag
     2401 ttcctataca catgtattat gctgcggtaa gtgggtcggt tacgaattca atctcaaaaa
     2461 aattgtttga taagtattac aaactagagc ttgaacgtat tcctttttta gaacaacatc
     2521 atctcatgga tgcgtatatg gaacagcgct ttaatttgta tgtgaagggc tggtataaac
     2581 caagactaga tatagtgaaa agtgaggaac gagaagaagc tgtaaaacgt tttttagata
     2641 tttatcatct gtatgaaaag tatgagagac cgcacgatgt tgaattagat gattatatta
     2701 aaacgttaaa aaaagaagtg aaacatctat aagggggtta gatgatg
//
LOCUS       DANHOL010000207         2655 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.210, whole genome shotgun sequence.
ACCESSION   DANHOL010000207 DANHOL010000000
VERSION     DANHOL010000207.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 2655)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2655)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2655
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.210"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            80..643
                     /locus_tag="PTC08_002279"
     CDS             80..643
                     /locus_tag="PTC08_002279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1700 domain-containing protein"
                     /protein_id="HDK5683737.1"
                     /translation="MDKITFLNELEYQLHRLPNHVVDEVMNEYENHFYREGLDGKSDE
                     AIVNALDTPKQIAKQRYAKYAVKNAEKKPDVTHLVRAVFATIGMSMITLFFIVIPLFF
                     VGLLLLIGTFLALGMLLSPLLLLITDVWSGMFSFSLSNYLYSFAYLGLGMMFIVMIVK
                     LIAAIKKLLIKYLKWNVNFIKKGTSQS"
     gene            640..1482
                     /locus_tag="PTC08_002280"
     CDS             640..1482
                     /locus_tag="PTC08_002280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4097 family beta strand repeat protein"
                     /protein_id="HDK5683738.1"
                     /translation="MRKLFVFGLSCFLICFILGTAVWFGFEKKKQSVEKIDKTFEKNA
                     INQIVINVDSTHIKMVPSDDFHISYEGKQDMKVSKQSRVLTITEMNRSGFRTPNLNPF
                     NNLEGQLEIGIPQNQLKEIDLTSNLGAIDIVDVNVEHATIWNGDSGELNIHNSELTHS
                     KFSANETLVNIENSRIDKSEFNIKQGKINGEKTLLKNSIFKLNSGDIHLKEMQTDCDF
                     KSSVKDGNIYLGYRQPPTDVMLSLNPENGKAIINNDEIKKGKNGTGTHQIELYTTRGD
                     ITVD"
     gene            complement(1583..2626)
                     /locus_tag="PTC08_002281"
     CDS             complement(1583..2626)
                     /locus_tag="PTC08_002281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="linear amide C-N hydrolase"
                     /protein_id="HDK5683739.1"
                     /translation="MQQVSSDVSAFRGTHYDYGVATGQWLQQTAMLKNREKEWKKRVP
                     RFDIDVEKTYQIFQQFAPKIWDEIQGIQDVLNIPTRQAILNFAHYRFTTLPESGCSVF
                     VGGDYLVRNYDYHPATYDARYQLFQPTDGGYAQIGPMSRTTGRMDGMNEYGLVMAYNF
                     MHRKKPANGFVCYMIGRLVLEYCRNVEEAIQFLNVLPHRSSFSYIVQDKTGAHAIVEV
                     TPRSIDVRYDTTCTNHFKLLTHENRNYTKESEERLARLDAQVQSSEPSRFDIFKRFND
                     PQYELYSKLFKSWSGTIHTTMYEPRQLYAWITLGENQPPIKFDFGAWLNGQPIDKTIL
                     TGHLDTDIHFATH"
BASE COUNT          827 a          463 c          535 g          830 t
ORIGIN      
        1 ttcaaaaagt gtttaatttt acagcacaac tccttataat ttgaggtgat aaaagattgc
       61 aataaagggg ggagctgcgg tggataaaat tacgtttttg aatgaattag aataccaatt
      121 acatcgattg cctaatcatg tcgttgacga agtgatgaat gagtatgaaa accattttta
      181 tcgtgaaggt ttggatggca aatcggatga agccatcgtc aatgctctcg atacaccaaa
      241 acaaatcgcg aagcaacgtt atgcgaaata cgcagtcaaa aatgctgaaa agaaaccaga
      301 tgtgacgcat ttagtccgcg ctgtttttgc aacgattggc atgagcatga ttacattgtt
      361 ttttattgtg attccgctct tttttgtggg cttacttcta ctcataggga catttctcgc
      421 tttaggcatg ttgttatcgc cattgttact gttgattaca gatgtttggt cagggatgtt
      481 ttctttttcc ctcagcaatt acttgtatag ttttgcttat ttaggactgg gcatgatgtt
      541 tatcgttatg attgttaaac tgattgctgc gattaaaaaa ttacttatta aatatctaaa
      601 atggaatgtc aattttatta aaaaaggaac atcacagtca tgagaaagtt atttgtattt
      661 ggactcagtt gctttttaat ttgttttatt ttgggaacag ccgtgtggtt tggttttgaa
      721 aagaaaaaac aatctgttga gaaaatcgat aaaacctttg aaaaaaacgc aatcaatcaa
      781 attgtaatta acgttgattc gacgcatata aaaatggtgc cgagcgatga ctttcatatc
      841 tcgtatgaag gcaaacaaga tatgaaagtt tcaaaacaaa gtcgcgtgct gaccattact
      901 gagatgaatc gctcaggttt tcgaacgccg aatctcaacc cctttaataa tttagaaggg
      961 cagcttgaaa tcggtattcc tcaaaatcaa cttaaagaaa tcgatctcac ttcgaattta
     1021 ggtgcgatag atatagtaga tgtcaatgtt gagcatgcaa cgatttggaa tggtgacagt
     1081 ggagaattga atattcataa tagtgagttg acccattcta aatttagcgc caacgaaacg
     1141 cttgtcaata ttgaaaacag tcgcatagat aaaagtgaat tcaatattaa acaaggaaaa
     1201 attaacggtg aaaagacgct actcaagaac agtattttta agttgaatag tggtgatatt
     1261 cacttgaaag agatgcaaac ggattgtgat ttcaaaagtt cagtgaaaga tggcaacatt
     1321 tacttagggt atcgtcaacc gccaactgac gtgatgctgt cgcttaatcc tgaaaatggt
     1381 aaagctatca tcaataacga cgagattaaa aaaggtaaaa atgggacagg tacacatcaa
     1441 atagaacttt atacgacacg tggcgatatt actgttgatt aggcaaataa tacagaggct
     1501 tggatatgag gtgatccgag ccctgtactt tttatattgt gacggggatt tgacatagaa
     1561 attttatgtc ccatccccaa cattaatgtg tagcaaagtg aatgtcagta tcgaggtgac
     1621 ctgttaatat agttttgtca attggctggc cattaagcca ggcgccgaaa tcaaatttga
     1681 tgggcggttg attttcacct aaagtgatcc aggcataaag ttgtcgtggt tcatacatcg
     1741 ttgtgtgaat cgtgccactc caacttttaa ataatttact atagagttca tattgtgggt
     1801 cattaaaacg tttgaaaata tcgaaacgtg atggctcaga tgactggact tgggcatcta
     1861 gccgcgccaa acgttcttct gactctttgg tatagttacg gttttcatgt gttagtaatt
     1921 taaaatgatt cgtacaagtc gtatcgtaac ggacatcaat gcttctcggt gtcacttcaa
     1981 caatggcgtg tgcacctgtc ttatcttgca caatatagct gaatgagctt cgatggggca
     2041 atacatttag aaattgaatc gcttcttcga cattacgaca atattctaat actaaacgcc
     2101 caatcatata acacacaaag ccattcgcag gttttttacg gtgcataaaa ttataagcca
     2161 taactaatcc atactcgttc atcccatcca tacgcccagt tgttcgtgac atcggaccaa
     2221 tttgcgcata gccaccatca gtgggttgga acagttgata acgtgcatcg tatgtggccg
     2281 gatgataatc gtaattgcgt actaagtaat ctcctccaac aaataccgag caaccactct
     2341 caggtaatgt cgtaaagcga taatgtgcaa agtttaaaat cgcttgtctt gtcggtatgt
     2401 ttaacacatc ttgaatccct tgaatttcat cccatatttt aggagcgaac tgttggaaaa
     2461 tttgataggt tttttctaca tctatgtcaa aacgagggac gcgctttttc cattcttttt
     2521 ctctattttt caacatggca gtttgttgta gccattgacc ggtagcaaca ccataatcat
     2581 aatgtgtacc acgaaaagct gaaacgtctg atgatacttg ttgcatgtgt attcatcctt
     2641 tctgacatct gtata
//
LOCUS       DANHOL010000208         2645 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.211, whole genome shotgun sequence.
ACCESSION   DANHOL010000208 DANHOL010000000
VERSION     DANHOL010000208.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 2645)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2645)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2645
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.211"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            14..1258
                     /locus_tag="PTC08_002282"
     CDS             14..1258
                     /locus_tag="PTC08_002282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDK5683740.1"
                     /translation="MNKQMTDANYYKKIIIALVLGWIAIWIYRTVLTPIYPQIQSDLG
                     NVSDSQIGLVASVYFFAYTGMQIPSGALVDRFGQKRVLIPAFLGFAVAAFIIGTAHTL
                     TQVYLGALVAGISTGSYYGAAFSLSAKYTPKDKKSFSNAIINSGSALGMIIGLVGSSV
                     LVGGLNIQWNYMLYMTGIIILAVTVVFVLFIKSDNIQTPTQQAKGSRHSVSTSTQQVS
                     LFAPKQLVIYFVYFATCYGYYMIVTWLPSFLVAEKNFEQSSVGYVAAIVAITAVPGAL
                     IFSKYIDKNAHQRLNLIVILLFAAAITISLTVFSPTPIVLYIALILYGLLGKLAIDPV
                     LITYVSDSVKEDVVAKALGMFNFFGMSSSVVAPWLTGLIGDMTGSKVIAFYISAILLV
                     IAALLFIFVVLLRKDKQQIHVQ"
     gene            complement(1337..2068)
                     /locus_tag="PTC08_002283"
     CDS             complement(1337..2068)
                     /locus_tag="PTC08_002283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HDK5683741.1"
                     /translation="MQERNDFIERLLESAGVTTGMRVLDVGCATGEVTQIVAKIVGET
                     GEVIGVDMNQNLLDIAENHNHATNVQFINADLYQLPESLGQFDAIVGRRILMYLPDVP
                     QILTLLKSRLNSKGILCFQESDAINGGVGAESLPEHQQAIQRVWSTIQQEGGDMHIGQ
                     KLYKLFLQAGMTDVHVHAEALIQTSDNNDLQWLTEMMLPRMVQHNSVSEDFSLDVWKQ
                     AMDREARQHQAAFIRGMPYGIFGRK"
     gene            complement(2200..>2645)
                     /gene="cas6"
                     /locus_tag="PTC08_002284"
     CDS             complement(2200..>2645)
                     /gene="cas6"
                     /locus_tag="PTC08_002284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="CRISPR-associated endoribonuclease Cas6"
                     /protein_id="HDK5683742.1"
                     /translation="QFLNEQELSRFIKLRIHTPMSFKSNGTYTIFPDMNSFFRSIMMQ
                     FDTFFDAYQMYDYDTLQYLKNHIHIVDYRLKTTRFHLEKVRIPSFIGDMTIKVNGPLP
                     VLQLSHFLLYFGSFSGAGIKTSLGMGKYSIVESRVEQNSKKNKQS"
BASE COUNT          763 a          550 c          458 g          874 t
ORIGIN      
        1 ggagggaatc attatgaata aacagatgac agacgcaaac tattataaaa aaattattat
       61 agcgcttgtc ctcggttgga ttgcgatatg gatttaccgt actgtcttga caccgattta
      121 tccacaaatt cagagtgatc ttggcaatgt aagtgactct cagattggac tcgtcgcaag
      181 tgtatatttc tttgcttaca ctggcatgca aattccatct ggcgcacttg tcgatagatt
      241 cggtcaaaaa agggtgttga ttccagcatt cttagggttt gcagttgcag cctttatcat
      301 tggaactgcc catacactta cacaagttta tttaggggcg ttagttgctg gtatttctac
      361 aggttcatat tatggcgcag ctttttcact ttcagccaaa tatacaccaa aagataaaaa
      421 gagcttttcc aacgccatca tcaatagcgg ttctgcttta gggatgatta tcggcttagt
      481 aggctcatct gtgttagtag gtggactgaa tatccaatgg aactatatgc tatacatgac
      541 tggcatcatt attttagcag tcactgtcgt tttcgtttta tttattaaaa gcgataacat
      601 acaaacacca actcaacagg caaaaggctc acgacattct gtatcaacat caacgcaaca
      661 agtgagttta ttcgcaccga aacaactcgt catctatttc gtttattttg caacttgtta
      721 cggctattac atgattgtca cttggttgcc gtcatttttg gtcgccgaaa agaactttga
      781 acaatcgtct gttggttatg ttgcagctat cgtagctatt acagctgtac ccggcgcttt
      841 aattttttcg aagtatattg ataaaaacgc acaccaacgt ctaaatttga tcgttatttt
      901 actttttgca gctgccatta caatcagctt aactgtcttt tcacctacac caatcgttct
      961 ctatattgca cttattcttt atggattact tggtaaattg gcaattgatc ccgtgttaat
     1021 aacgtatgta tctgattctg ttaaagaaga cgttgttgca aaagcacttg gaatgtttaa
     1081 ctttttcggc atgtcttctt ccgttgttgc gccttggtta acaggactca ttggagatat
     1141 gacaggttca aaagttatcg cattttacat ttcagctatt ttattagtta ttgctgcact
     1201 tctctttatt tttgttgttt tgttacgtaa ggataaacaa cagatacatg tgcaataata
     1261 taaaaaacga gcattcaaac tcatcattgg attgatgctc gtttttctat tgattcaatt
     1321 cattttttat aataaatcat tttcgcccaa aaattccata aggcatgcca cgaataaagg
     1381 ctgcttgatg ctgtcttgct tctctatcca tcgcttgctt ccacacatct agggagaagt
     1441 cttcactcac actgttatgc tgaaccattc ttggcaacat catttctgtc agccactgta
     1501 aatcgttgtt gtcagacgtc tgaataaggg cctccgcgtg cacatggacg tctgtcattc
     1561 ctgcttgtag aaacagcttg tacaattttt gaccgatatg catgtcacca ccttcttgtt
     1621 gaattgttga ccacacacgt tgaattgcct gttgatgttc cggtaatgat tccgcaccga
     1681 cacccccatt gatggcgtca ctttcttgaa aacataggat acctttcgag tttaatcgcg
     1741 atttcaatag ggttaatatt tgaggcacgt ctggcaaata cattaaaatt cgacgtccca
     1801 ctatcgcatc aaactgaccg agtgattccg gaagttgata aagatctgca ttgataaatt
     1861 gaacattagt ggcgtgattg tggttttcag caatatctag caaattctga ttcatatcta
     1921 caccgatgac ctcacctgtc tcaccaacga ttttcgctac aatttgggtt acttcacccg
     1981 tcgcacaccc tacatctaac acacgcattc ctgttgttac accagcactt tcaagcaatc
     2041 tctcgataaa atcattacgc tcttgcatga tatgacctcc tcatttcgac acttttctta
     2101 acgcttcata ttataaagaa aaaagcagac aatttcgaat gatggtgatg aacacacctc
     2161 attcatagaa acatcaataa acagtcgcaa cacttgacgc tacgactgct tatttttctt
     2221 gctattttgt tcaactctag attcgacaat actatattta cccattccta aactagtttt
     2281 aataccagca ccactaaatg atccaaaata tagcaagaag tgactcaatt gcaacacagg
     2341 aagcgggcca ttcactttta ttgtcatgtc accgataaat gatgggattc taactttttc
     2401 caaatgaaat cttgtggttt ttaaacgata gtcaacaata tgaatatgat tcttcaaata
     2461 ctgcaatgta tcataatcat acatttgata tgcatcaaaa aaggtgtcga actgcatcat
     2521 gatacttcta aaaaaactat tcatatcagg aaagatcgtg tacgttccat ttgacttaaa
     2581 tgacataggt gtgtgaatgc gaagttttat aaaacggctc agctcttgct catttaaaaa
     2641 ctgat
//
LOCUS       DANHOL010000209         2640 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.212, whole genome shotgun sequence.
ACCESSION   DANHOL010000209 DANHOL010000000
VERSION     DANHOL010000209.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 2640)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2640)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2640
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.212"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            <1..790
                     /locus_tag="PTC08_002285"
     CDS             <1..790
                     /locus_tag="PTC08_002285"
                     /inference="COORDINATES: protein motif:HMM:NF012798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HDK5683743.1"
                     /translation="NHIKEKFGNRKISEITRPQCLEFRTHLIDNCNSINTARTIWFTF
                     KAVFSYASLYYGLSPNPCTGIPTIPKKKTKFNFVTKEEFHNKIVNLKNDTYREMLTFM
                     FYTGTRVGEAMGMLWEDVNLERKEISISKTWDITQRKMADYPKTSSSIAILPIPKILV
                     EMLSDMYEIASNKYYGFNDSMFVFGGYAPPDYAHFSRTVKTIFPKITSHGLRHSYASY
                     LADKGCDIYVLRDLLRHSSITETVDTYTHFYNNKKHDVMSLFDD"
     gene            complement(819..1970)
                     /locus_tag="PTC08_002286"
     CDS             complement(819..1970)
                     /locus_tag="PTC08_002286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA/acyl-ACP dehydrogenase"
                     /protein_id="HDK5683744.1"
                     /translation="MKSVLIQSAIQKEWLAKLEAHREELTKYAQSNDRAHRFPHENIQ
                     WLVDEGYTQLTLPESYGGRGATLEDMVVLQSVLGSIDGPTALSIGWHIALVGEVFERR
                     IWDKAILDDFAEAVKNGALANRAVSEAETGSPTRGGRPQTYARFENNHFILNGVKTFT
                     SMSPVLTHIIVAAYIPEKEQVGFFMVKKDTPGLEIANNWNMVGMRATESHDVILNDVP
                     VQPDQLIEIRGEGPPYQNGWLLHIPATYLGIAQAARDYAVDFALEYSPNSIEGTIADL
                     PVVQQNIGQMETKLITARHLLWSTARAYQKMTPQDVVAAETAASKVVVMNEGLDVIDL
                     AMRIVGAKSLEMERPLQRYFRDMRAGLHNPPMQDMAFTKIASIAIDSRR"
     gene            complement(2408..>2640)
                     /locus_tag="PTC08_002287"
     CDS             complement(2408..>2640)
                     /locus_tag="PTC08_002287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HDK5683745.1"
                     /translation="LTFILEHQQETYNVKDIIRSSKFKPYYITKAMQKLKDFGFLTKK
                     RNEQDERTVIVEVSKEQYEKIASLFNEIETLL"
BASE COUNT          773 a          541 c          455 g          871 t
ORIGIN      
        1 gaatcatata aaagaaaagt ttggaaaccg taaaatttca gaaataacac ggcctcagtg
       61 tttagagttt agaactcatc ttatagataa ttgtaattca ataaatacag ctcgtacgat
      121 ctggttcact tttaaagctg ttttttcata tgcttctctt tactacggtt tgtcgccaaa
      181 tccttgtact ggtataccta caatacctaa aaagaaaact aaattcaact ttgtaactaa
      241 agaagaattt cacaataaaa tagttaatct gaaaaacgac acatatcgag aaatgttaac
      301 ttttatgttt tatacaggca ctagagtggg cgaagcaatg gggatgcttt gggaagatgt
      361 gaatctagaa agaaaagaaa taagtatatc taaaacttgg gatatcactc aaaggaaaat
      421 ggccgattat cctaaaacta gctcatcaat agctatattg ccaataccaa aaattctcgt
      481 tgaaatgtta tctgatatgt atgaaattgc atcaaataaa tattatggct ttaacgattc
      541 aatgtttgtt ttcggtggtt acgccccacc tgattacgca catttttcga gaaccgttaa
      601 aaccattttt cctaaaataa catcacacgg gttaagacat tcttatgcaa gttaccttgc
      661 tgataaaggg tgcgatattt atgtgttgcg agatttgttg cgccattcaa gtataactga
      721 aacagttgat acttacactc atttttacaa taacaaaaag catgatgtta tgtcactatt
      781 tgatgactaa tggtatcgaa atggtatcat ttttataatt atctcctgga atctatagca
      841 atactggcga ttttagtaaa cgccatgtcc tgcatgggtg ggttatgcag gcctgcccgc
      901 atgtctcgaa aatatcgttg caatgggcgc tccatttcta aactttttgc accgacgata
      961 cgcatcgcca aatcaatcac gtccaatcct tcattcatca ctacgacttt acttgcagcg
     1021 gtttctgcag caacaacatc ttgtggtgtc attttttggt aagcacgtgc agtactccat
     1081 agtaaatgcc tcgctgtaat gagttttgtt tccatttgac cgatattttg ttgcacaacc
     1141 ggtaagtctg caatcgtccc ttcaatgcta ttcggactat attctaatgc aaaatcaact
     1201 gcataatctc gagcagcttg ggcaatacct aaataagttg cgggaatgtg taataaccaa
     1261 ccattttgat acggtggccc ttctcctctg atttcgatga gctggtctgg ttgaactggc
     1321 acatcattca gtatcacatc atgactttct gtcgcacgca tgccgaccat attccaatta
     1381 ttggcaattt ctaaacctgg cgtatctttc ttgaccataa aaaagcctac ttgttctttt
     1441 tcagggatgt aggctgccac aatgatatgt gttaagacag gactcatcga cgtaaatgtt
     1501 ttaacaccat ttaaaataaa atggttattt tcaaagcgcg catacgtttg ggggcgtcca
     1561 cctcttgtag gactgcctgt ttccgcttca cttaccgctc tatttgcgag tgcgccgttt
     1621 ttcactgctt cagcaaaatc atctaaaatc gctttatccc aaatgcgacg ttcaaacact
     1681 tcccctacaa gtgcaatgtg ccaaccaatt gaaagtgcag taggtccatc aatcgaccca
     1741 agtactgact ggaggacgac catatcttct aaagtggctc ctcgtccgcc gtacgattca
     1801 ggtaatgtca attgcgtata cccctcatca actaaccatt gaatattctc gtgaggaaaa
     1861 cgatgcgctc gatcattact ttgcgcatat tttgtcaatt cttcacgatg cgcttcaagc
     1921 tttgcgagcc attctttctg tatagcagac tggattaaca cagatttcat ttctaaaacc
     1981 tctcaatctt tttatttctt acttactttg tcaacattat aatataaata tgtgcgaatg
     2041 cctaatccga gttttaaaat gggttttaaa atacgccgtt gatagctata gtttccgcct
     2101 tgattgaagg ggattttgtg ataacgtttt gtacgcatca gaccccatct agtcatgctg
     2161 tgttgcgata acataaaaaa agcgacaaaa agcttatggt gtacgctttt tgtcgcttat
     2221 tccccatctc tttttcacta tctttagtgc actaaagacc ccatctagat agcggttttc
     2281 tttggatatg tcgctgctag aaacagatga tatgcccttc aatccgaaac tacttgccgc
     2341 taatccaata ttgttcattg tttattgccc attcatgcta catgctgtca atctgtcaat
     2401 gatatgctta aagtaacgtt tcgatttcgt taaataaact cgcaattttt tcgtattgct
     2461 cttttgaaac ttcaacaatg actgttcttt catcttgttc attacgcttt ttagttaaga
     2521 aaccaaagtc tttaagcttt tgcatcgctt tcgtaatgta atatggctta aacttagaag
     2581 atcttataat atctttcacg ttataagttt cttgttgatg ttccaaaata aacgttaaaa
//
LOCUS       DANHOL010000210         2612 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.213, whole genome shotgun sequence.
ACCESSION   DANHOL010000210 DANHOL010000000
VERSION     DANHOL010000210.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 2612)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2612)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2612
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.213"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            <1..213
                     /locus_tag="PTC08_002288"
     CDS             <1..213
                     /locus_tag="PTC08_002288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter permease"
                     /protein_id="HDK5683746.1"
                     /translation="VAINKEMFGFLAPFEASNSMYVSVEKVLNGEIPTINLHDVLTIA
                     LFFTFVFIVNFIVLGLSKKRWLKLGL"
     gene            789..2019
                     /gene="ltrA"
                     /locus_tag="PTC08_002289"
                     /pseudo
     CDS             789..2019
                     /gene="ltrA"
                     /locus_tag="PTC08_002289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219999.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="group II intron reverse transcriptase/maturase"
     gene            complement(2372..2612)
                     /locus_tag="PTC08_002290"
                     /pseudo
     CDS             complement(2372..2612)
                     /locus_tag="PTC08_002290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001095317.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
BASE COUNT          862 a          432 c          565 g          753 t
ORIGIN      
        1 gtagctatca ataaagaaat gtttgggttt ttagcaccat ttgaagctag taattcgatg
       61 tatgtatctg tagaaaaagt gcttaatggt gagattccga caattaatct ccatgatgta
      121 ttaactatcg cactattttt cacttttgta tttattgtta attttattgt attgggatta
      181 tctaaaaaga gatggctaaa actagggtta taaacttttg gtctataatt acataatctc
      241 aaaaagcgat ttacttcatg agtgaaagta catcgctttt ttaagtgcgc ccggcatggg
      301 taacatcttg acggtgtaag ttcgttacag gcttggtagt aggaactgtt agtgaaagac
      361 aaaggtgtcc attgcgaagt ggatctgaag gaagtcggac gcaaacactc gtactgacga
      421 acagaaacat catactaagg ctatgtagaa tgaatgaatc tgctatacaa gatgaagtcc
      481 gatactaccc gagttctata tagtaaatga tgcggtgaca tgagtggaaa gaggttacac
      541 cttacccggg gaggtctcat caacggtatc tctaccgtag taacaacgaa ggatgagaag
      601 tcagcagaag tcatagtagg gaaaatgtac cgaaggactg aacaatattc aatacaaagt
      661 aaagattgga ggttatagat ttacgacgta cagaatacgg tgttaaccgg caacttatgg
      721 aaggataagt agtggaacga aaaagaatac ataagtgtgt acagtaaatc ttaggtgaaa
      781 tgaaagaaat gtatcgtaag tctccatcac tgatggagct tgttgtaaga cctgaaaata
      841 tagaaaaggc tatcaaaaag gttaagaaaa ataaaggcgc tcctggaatt gacggcatga
      901 aagtcagtga actccatgct cactttgcgc agtacttttc acagataacg aaaaaactgc
      961 ttgatggttc atatcaacct caagcagttc gaaaagttca aattcccaaa ccaaacggga
     1021 aaatgcgtgt gcttggtatt cctgtcgcta gagacagagt catacaacaa gccattagac
     1081 aagtgattga accaggcatc gaccgaacat tctcaaatca tagccatggt ttcagacctc
     1141 atcgtagcac aggaacagca cttaagcaat gtgctgacta ctacgaagaa ggctataaaa
     1201 tagctgtgga ttgtgatttg aaacagtgct ttgacatgtt gaatcatgat aagctcatgt
     1261 atttgttcga acgccatgtt caagataagt caatttccac atttatccgt agaagtttac
     1321 aagtcggtgc cattgaccta tctggcgaag tcacagaaag aaagataggt gcaccacaag
     1381 ggggcgttat ctctccctta ctatgtaata tctatctaca tgaactggat aaagaactcg
     1441 aaaagcgcgg acatcgtttt gtacggtatg ccgatgactt tgtcatcttt gtacgcacaa
     1501 aacgtgcagg tgaacgcgtg atgacgagtg taacgaaatt cattgaaaag caattgaagt
     1561 tggttgtcaa tgaagagaaa agtaaagtag gagcagtcac acgtttaaag ttcttgagtt
     1621 gtctaataac caaggtaaat ggggtttgtc gtttcagacc gactatggaa gcaaaaagaa
     1681 atttaatacg caccttaagg aaaataacga aacgaaatag acccggtacc tttaaagaca
     1741 ttatcattga aattaaccaa gtgacgcgag gttggataaa tgactttggt agaggtttta
     1801 tcagaggatt tattgaaacc acgcaatctt ggttgaaccg ccggcttaga caactcattc
     1861 ttaaacggtg gaaaagagtt agaactaaat ataagatgtt gcgtcaatat gggcttgacc
     1921 atagaagtgc aatgaaaatc gcaccgtctc gcaaaaaaat attggcgatt atcgaatacg
     1981 cacgaggttc atcgtgcact tacaacaaaa taactctaaa agtggggatt aataccgtta
     2041 gcccagcttg cagagttggc ttacgcaaga tattgaaccg ccgagtacgg aaccgtacgc
     2101 tcggtggtgt gagaggacga atagtcaatt aatgactaat ctcctactcg attttgccga
     2161 gtatgcttgt tatcttgatg gaataagttt gttacagtac tagtagtaag aacatcgata
     2221 ctttatgatt cgtcatatgt tcttgctgaa aaatataaag ttcttttttg ttcgtcaaca
     2281 gtgtcaatag cggtttgaaa atgtcggttt ttagcggttt aagaacgatg acatatattt
     2341 aaactttttt acttttatag actttaagtc gttaggaagc ctctgtaatt ttaaatattt
     2401 ttgaatgatg aatgagttta tcaataatgg ttgctgacgc tattttgttc ctaaattaat
     2461 ctccccaact agaaaaggag atattcgtcg ttatgatcgt ggatttcatt tcatatctta
     2521 gtgacatcaa ttgatagaag aggtctgcct gttcttttga aatgggtgta tagcctatct
     2581 catcaataat aagtagttca attctgttta at
//
LOCUS       DANHOL010000211         2607 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.214, whole genome shotgun sequence.
ACCESSION   DANHOL010000211 DANHOL010000000
VERSION     DANHOL010000211.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 2607)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2607)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2607
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.214"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            <1..>2607
                     /locus_tag="PTC08_002291"
     CDS             <1..>2607
                     /locus_tag="PTC08_002291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000431211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HDK5683747.1"
                     /translation="VAEQHNGDLVAIQAKFNKGKIGKSEINSFVAELGSTYYTRGLII
                     STVDEWNSNARATIDKNEKGIEIIGLSDLRNSQINWADFSFERPEQTSIKQPKSLRPY
                     QLDALESAVSYFKTKDRGQLIMAPGTGKTFTSLKIAEALSKQSYKQFKVLYLVPSIQL
                     LTQTLRGWNNDTEYTMTSMAVTSDRDASRGDDGTEDIKATDIGYPATTSKDQLLKNWN
                     DVQEKESSTDLFVVFSTYQSIEVIGKAQKEGFPEFDLIISDEAHRTTGAHEMNKDASV
                     FTKVHDNENVKGKLRMYQTATPKIYGDSAKKNAKDKSILLSSMDDESKYGEVIYRMGF
                     GQAVSRGILTDYKVMVLAVDETAIQRDMQRTLADPENGLNIDDVGRIIGIWNGMMRRN
                     GYKNPVKNSPYDGAPLERAIAFTRTIEDSKKVSHQFEEVVNEYIGADIEEQSKKLSMR
                     HADGTMNALQKGEVLDWLADPNKPSDEARIVSNVRFLTEGIDVPTLDAVIFLAPKKSQ
                     VDIVQAVGRIMRKSENKDYGYIILPIVIPAGEKPETILDNNKNYEAVWQIINALRSVD
                     ERFEAMVDKLNIAKPKQLRVIGVGPSPDKENDLVNDNAETNQLKPKEFEPTQLEFQWD
                     KYEQAIFGKIVEKVGNRKYLENWSADVAKIAQRQISWIKTKLEDKNDPISIEFKKFVS
                     SLRHNINASIDENQAAEMLSQHLITKPIFEALFSEYSFVNNNPVSSAMENIVQELEKA
                     GFAKEQENLTPLYESVKMRAEGVERNEDKQKIIITLYDKFFSTAFKSTTEKLGIVFTP
                     VEVVDFIVKSVDVILKKHLNKSLSDKGVHIFDPFTGTGTFIVRTLEYLKEQMEHGVIS
                     LEDITYKFMSEL"
BASE COUNT         1011 a          351 c          509 g          736 t
ORIGIN      
        1 tagttgctga acaacataat ggagatttag tagctataca agcgaaattt aataaaggga
       61 aaataggtaa aagtgaaatt aattctttcg tcgcagaact tggatcaaca tactatacta
      121 gaggattaat tatatcaact gttgacgaat ggaatagtaa tgctagagca acgattgata
      181 aaaatgaaaa aggaatagag ataattgggt tatcagattt aagaaactca caaattaatt
      241 gggctgattt cagttttgaa agacctgaac aaacatcaat taaacagcct aaatcattac
      301 gtccatacca attagatgct ttagaaagtg ctgttagcta ttttaaaact aaagatcgtg
      361 gccagttaat catggcacct gggacaggga aaacgttcac aagtttaaaa attgctgaag
      421 cattatctaa acaatcatat aaacaattta aagttcttta tttagtacct agtattcaat
      481 tgcttacgca aacattaaga ggatggaata acgatactga atatactatg acaagtatgg
      541 cagttacttc agatagagat gcttcaagag gtgatgatgg tacagaagat attaaagcta
      601 cagatatcgg atacccagcc acaacctcta aagatcagtt gcttaaaaac tggaatgatg
      661 ttcaagaaaa agaatcaagt actgatttgt ttgtcgtatt cagcacatat caaagtattg
      721 aagtaatagg taaagcacaa aaagaagggt ttccagagtt tgatttaatt atttctgatg
      781 aagcacatag aacaactggt gctcatgaaa tgaataaaga tgctagtgta tttacaaaag
      841 ttcatgacaa tgaaaatgta aaaggaaaac tgcgcatgta tcaaacagca acaccaaaga
      901 tttacgggga cagtgctaag aaaaatgcta aagataagag tattttactt tcttcaatgg
      961 atgatgaatc aaaatatggt gaagttattt atcgtatggg ttttggacaa gcagtgtcac
     1021 gaggtatatt aactgattat aaagtaatgg tattagctgt tgatgaaaca gctattcaaa
     1081 gagatatgca acgtacgtta gctgatcctg aaaatggttt gaatattgat gatgtgggta
     1141 gaattattgg tatttggaac ggtatgatgc gtagaaatgg atataaaaat ccagttaaaa
     1201 atagccctta tgatggtgca ccattagaaa gagccattgc atttacaaga acgattgaag
     1261 attctaaaaa ggtatcacat caatttgaag aagttgtgaa tgaatacatt ggtgcagata
     1321 ttgaagaaca atctaaaaag ttatcaatga gacacgcaga tggaacaatg aatgcacttc
     1381 aaaaaggtga ggtgttagat tggttagcag atccaaataa accatctgat gaagcgagaa
     1441 ttgtctctaa cgtaagattc ttaaccgaag gtatagatgt accaacatta gacgctgtga
     1501 ttttcctagc acctaaaaaa tcacaagtgg atattgttca agcagttgga cgtattatgc
     1561 gtaaatcaga aaataaagat tatggttata tcattttacc gattgttatc ccagctggtg
     1621 aaaagccaga gacgatttta gataataata aaaactatga agcagtatgg caaataatca
     1681 atgcattacg ttctgtagat gaacgttttg aggcgatggt ggataaactc aacattgcta
     1741 aaccaaaaca gttaagagtt ataggtgttg gtccgtcacc agataaagaa aatgatttag
     1801 taaatgataa tgcagaaaca aaccaactga aacctaagga gtttgaacca actcaattag
     1861 aattccaatg ggataaatac gagcaagcaa tattcggtaa aatcgttgaa aaagtaggta
     1921 atcgtaaata tttagagaac tggtctgcag atgtagcaaa aattgcacag aggcaaatta
     1981 gttggataaa aacgaaatta gaggataaaa atgatccgat ttcaattgaa tttaaaaagt
     2041 ttgtatcttc tctacgacat aatatcaatg caagtataga cgaaaatcaa gcagcggaga
     2101 tgttatctca gcatttaatc acaaagccta tatttgaagc attatttagc gagtatagct
     2161 ttgtaaataa caatccagta tcttcagcta tggaaaatat cgttcaagaa ttagaaaaag
     2221 caggttttgc gaaggaacaa gaaaatctta cccctttata tgaatctgta aaaatgagag
     2281 cagaaggtgt ggaaaggaat gaggataagc aaaaaataat aatcacacta tatgataagt
     2341 tcttcagtac agcttttaaa tcaacaacgg aaaaactagg aattgttttt accccagttg
     2401 aagtagttga tttcattgta aaatcagtag atgttatctt gaaaaaacat ctaaataaat
     2461 ctttatctga taaaggggta catatttttg atccattcac aggaacggga acctttatag
     2521 ttagaacatt agaatattta aaggaacaaa tggagcatgg tgtaatttct ttagaggaca
     2581 ttacttacaa atttatgagt gaattac
//
LOCUS       DANHOL010000212         2585 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.215, whole genome shotgun sequence.
ACCESSION   DANHOL010000212 DANHOL010000000
VERSION     DANHOL010000212.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 2585)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2585)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2585
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.215"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(<1..1362)
                     /locus_tag="PTC08_002292"
     CDS             complement(<1..1362)
                     /locus_tag="PTC08_002292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-glycerol glycerophosphotransferase family
                     protein"
                     /protein_id="HDK5683748.1"
                     /translation="MMNKSVKKVLSNQLSRKYKFASSPILNLIKSKYQRKVSKYAHLY
                     QKTSLKPHQIIYQVRDGKSITDSPYAIFLKLNSDKQFSKYHHIWVVDHPHTMHYYKKK
                     FKKFNNVSFVIKESEEYLQALTESKFIINNATFPAYFTKKPEQVYINTWHGTPLKHMG
                     LDVADNLRGSQNTIKNFLASDYIISPNAHTTDIFERAFKLKGLYNGEILEMGYPRIDL
                     TLNTSTKEARKYLAEHLNLKKKPILLYCPTWRGKNVNDPENSLLNVFEEIKLLNQKLP
                     YQVLVKVHPFVYSKAKEMPELKPYLVPDFLDTNQLMPAVDLMVTDYSSIFFDFLVTEK
                     PVVFYVPDLKMYQSERGVYIEPSELPGPVTDTIQEVIEMIQDETYRHADVRDKYLKFK
                     HQFVGYEDGQVTDRFIEKVFLNHQGQSLNMNHRSEKKKLLLYPGGMKNNGITTSVMNL
                     LSNI"
     gene            complement(1615..2550)
                     /locus_tag="PTC08_002293"
     CDS             complement(1615..2550)
                     /locus_tag="PTC08_002293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002492548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-mannose 4,6-dehydratase"
                     /protein_id="HDK5683749.1"
                     /translation="MKVLITGGAGFIGSHVAEHFIKQQQDVYIVDNLSSGYRANIPFI
                     DDNHFFHTDIRNYDVMESIIRKHQFDVIIHLAAVVSVVDTVENPESSNDVNISALVHL
                     LELSRKHLSHLKKFIFASSAAVYGNEPNLPKDINSHIQPESPYAIQKYSSEQYVKLYH
                     TLYHLPTTSLRFFNVYGPKQDPQSQYSGVLSIMKNCFDYDKTFTFFGDGEQTRDFVYV
                     KDIVQAVQVVLEQHASHGKVYNVGTSHPTSLLAIYETFVNLYQKEIPVAFVDPRDGDV
                     KHSYADIEPLKQLGFLNCYTLEEGLDEYLNFERNH"
BASE COUNT          815 a          449 c          386 g          935 t
ORIGIN      
        1 aatgtttgat aacaagttca tcacagaggt tgtaataccg ttatttttca tacctccagg
       61 ataaagcaac aattttttct tttcacttct atggttcata tttagcgatt gaccttgatg
      121 atttaaaaat actttctcaa taaaacggtc tgtaacttgt ccatcttcat atcctacaaa
      181 ttgatgctta aatttcaaat atttatctcg aacatcagca tgtcgatatg tttcgtcttg
      241 aatcatttca ataacttctt gaattgtatc agtcactggc ccaggtaatt cggaaggctc
      301 aatataaacg ccacgttcac tttgatacat ttttaaatct ggaacgtaaa atacaactgg
      361 cttttctgta acaagaaaat caaaaaatat acttgaataa tcagtaacca tcaaatctac
      421 agccggcatc aactgattcg tgtctaaaaa gtctggcact aaataaggtt tgagttctgg
      481 catttcttta gccttgctgt aaacaaaagg atgtacctta actaaaactt gataaggtag
      541 cttttgattt agtaatttaa tttcttcaaa aacatttagt aaactatttt ctgggtcatt
      601 aacattcttc cctcgccatg ttggacaata aagtaagata ggttttttct ttaagtttag
      661 atgctcagct aaatattttc tagcttcttt tgtagacgta ttgagcgtca aatctatacg
      721 tggatatccc atttctaaaa tttcaccgtt atataaacct ttcaatttaa atgctcgttc
      781 aaaaatatct gttgtgtgtg catttggact aataatgtag tctgaggcta aaaagttttt
      841 tatcgtgttt tgtgagcctc tcaaattatc tgctacatct aagcccatat gtttcaaagg
      901 cgtcccatgc catgtattaa tatacacttg ttcaggcttt tttgtgaaat aagcaggaaa
      961 tgtcgcatta ttaataataa acttactttc tgttaaagct tgaagatatt cttcagactc
     1021 tttaatcaca aatgatacat tattgaattt tttgaatttc ttcttataat aatgcattgt
     1081 atgagggtga tcgacgaccc atatatgatg atatttacta aattgcttat ctgaatttaa
     1141 tttcagaaaa atggcgtaag gactgtctgt gatactttta ccgtctctta cttgatagat
     1201 aatctgatga ggtttgagag aagttttttg gtacaaatga gcatatttac tcacttttct
     1261 ttgatacttt gacttgatta gatttaaaat gggtgaactt gcaaatttat acttcctaga
     1321 taattgatta gatagcactt tcttgacact tttattcatt atgttctcct ttaattaaaa
     1381 tattgatatt tccggatgac tttcatttct ttaacattat cctaacaaac caacttgcct
     1441 tacgtatcag ctttttacta cttccaatcg tgagcagatt tctttaccac ttatttattc
     1501 tttacatatt agaaaaaatc agtcacaacc ttgtagttag gactgattaa gcacaacttt
     1561 ataaccttgt atcacctgat ttacacattt ataataaagt tttaatgtct atgactaatg
     1621 gttcctttca aaatttaagt attcatcaag accttcttct agggtataac agtttaaaaa
     1681 acctaattgt tttaaaggtt caatatcagc ataagaatgc ttaacatctc catctctagg
     1741 gtcaacaaac gcaaccggta tctccttttg atacaaatta acaaaagttt cgtatatggc
     1801 taataaagac gttggatgag atgttccgac gttgtacact ttcccatgag aagcgtgttg
     1861 ttctaaaacg acttgaacag cttgaacaat atctttaaca tacacaaaat ctctcgtttg
     1921 ttctccatct ccaaaaaaag taaacgtttt gtcataatca aaacaatttt tcatgataga
     1981 cagcacacct gaatactgtg attgaggatc ttgcttaggg ccgtaaacat taaagaatcg
     2041 gagtgaggtc gtcggtaaat gatataacgt atgatacagt ttcacatact gttcactact
     2101 atacttttga attgcatagg gtgactcagg ttgaatgtga ctattaatat ctttaggtaa
     2161 atttggctca ttgccataaa ccgctgctga tgaagcaaat ataaactttt taaggtgact
     2221 taagtgtttt ctacttaatt caagtaagtg aacaagtgct gaaatattga catcatttga
     2281 gctttcagga ttttctacag tatccacaac gctaactact gctgctagat ggatgataac
     2341 gtcaaattgg tgttttcgaa taatactttc cattacatca taatttctaa tatcggtatg
     2401 gaagaaatgg ttatcatcaa taaacggaat atttgctcta tatccactac tcaaattatc
     2461 aactatgtat acgtcttgtt gctgttttat aaagtgttct gcaacatgtg aaccgatgaa
     2521 tccagcacca cccgtaatca atactttcat tttcatttcc tccttataat tagtaaaatc
     2581 gtttg
//
LOCUS       DANHOL010000213         2456 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.216, whole genome shotgun sequence.
ACCESSION   DANHOL010000213 DANHOL010000000
VERSION     DANHOL010000213.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 2456)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2456)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2456
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.216"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            50..1549
                     /locus_tag="PTC08_002294"
     CDS             50..1549
                     /locus_tag="PTC08_002294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="coagulase"
                     /protein_id="HDK5683750.1"
                     /translation="MKKKLLVLSASAVLASHFLVGGEASAIVSGEKNPYTSKALSIME
                     KSSTSSVTTEQYKKSLEKLMARLTIGGYEKYDEPEYADVVKKYKQRFMAEMNAMNQFL
                     QEEKAKEKKNGAISTDAIGLTHQRYDTVYKSLEENKKDFEREIKKLNEQHSDLKTFNR
                     QEQNDADQKLNDLENQALMLGQTFIYQGDAIFNLYNKLDMSIGNLDYEREEKKAINKR
                     MLDKKVEDLETIIDEFFEEIGLARPKEIPVLTRENEKDSAVKAKLRQDAQDAKNDASL
                     RHPRVLKQQSTDAPSQPSDQEVAQPSVNSIEIKAPQAATPQQPVHTETIVHTPMTAVP
                     QTKHEATFEVPQGRNTQTSATANSEQATETVDVPKANGQVQSEQVTTPGVQQTHSMAQ
                     QSETPQPVAEETEIITENHVVDIDESTTFQKSGYLYGVSESDTSGYTEREKRAIRRNH
                     VREAEALVNQYVETHRYQDRMAAQQKVNTLSKAHQKRFNKMINKAYNGQ"
     gene            1743..2447
                     /locus_tag="PTC08_002295"
     CDS             1743..2447
                     /locus_tag="PTC08_002295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exotoxin"
                     /protein_id="HDK5683751.1"
                     /translation="MKQSTILKVSLAVGILTTGVGIHSQAAAFASEAHAQNVHSEAQQ
                     LKDYYSKTYFEYNDVTGYVEDNNKLSVVTPQETLVSVSLVGKDLSKYTDKANGYNHLD
                     LFVVPEGTDRSAETKSIGGITKTNQRSYYDYVKKPNIIINKKYGELTSSMSTNDFSIN
                     KEEVSLKELDFKLRQKLINEYGLYQNGSSNGKIVIKIGDNDKDIMTLELNKKLQEHRM
                     SDTVDVNKIQQITIDL"
BASE COUNT         1002 a          416 c          442 g          596 t
ORIGIN      
        1 aaaagtaatt tgtaactata aatatattca tattaaggga gaagaattaa tgaaaaagaa
       61 attgcttgtt ttatccgcaa gtgctgtgct tgcttcacac tttttagttg gaggagaagc
      121 gtctgccatt gtttcagggg agaaaaatcc ttatacatct aaagctttat cgattatgga
      181 gaagagtagt acgtcatcag tcactacaga acaatataaa aagagcttag aaaaattaat
      241 ggctcgacta acaattggtg gttatgaaaa atatgatgag ccagaatatg ccgatgtcgt
      301 taaaaaatat aagcaacgtt ttatggctga aatgaatgcc atgaaccaat ttttacaaga
      361 ggaaaaagca aaagagaaaa agaacggagc tatttcaact gatgccatag gattaacaca
      421 ccaaagatat gatacagttt ataaatcctt agaagaaaac aaaaaagatt ttgaaagaga
      481 aatcaaaaaa ctgaatgaac aacactctga tttaaaaacc tttaatcgac aagaacaaaa
      541 tgacgcagat caaaaattaa atgatctaga aaaccaagcg ttaatgttag gtcaaacatt
      601 tatttaccaa ggtgatgcga tattcaactt gtataataaa ctcgatatga gcatcggtaa
      661 cttagattat gagcgcgaag agaagaaagc tattaacaaa cgtatgttag ataaaaaagt
      721 ggaagattta gaaacgatta ttgatgaatt ttttgaagaa attggtttag cacgtcctaa
      781 agaaatccct gttttgacaa gggaaaatga aaaagatagt gcagtgaaag caaaacttag
      841 acaagatgca caagatgcta aaaatgacgc aagtttgaga caccctagag tgttaaaaca
      901 acaaagtact gacgcaccat ctcaaccgag tgaccaagaa gttgcgcaac catcagttaa
      961 tagcatcgaa atcaaagcac cacaagctgc aacaccacaa caacctgtgc atactgaaac
     1021 aatcgtacac acaccaatga ctgctgtacc acaaacgaag catgaggcta cattcgaagt
     1081 acctcaaggg cgtaacacac aaacatcagc tactgctaac agtgaacaag caactgaaac
     1141 agtcgacgta cctaaggcaa atggacaagt acaatctgaa caagtcacga cacctggagt
     1201 acaacaaaca cattcaatgg cacaacaatc agagacacct cagccagtag cagaagaaac
     1261 tgaaataatc acagaaaatc acgtcgttga tattgatgaa tctactactt tccaaaagtc
     1321 aggctatttg tatggtgtaa gcgaaagtga tacatctggc tacacagaaa gagaaaagcg
     1381 cgccattcga cgtaaccatg tgagagaggc agaagcatta gtaaaccagt acgttgagac
     1441 acatcgttac caagaccgaa tggcggctca acaaaaagtc aacacattaa gcaaagcaca
     1501 ccaaaaacgc tttaacaaaa tgattaataa agcttacaac ggtcaataaa atatcaagta
     1561 atcaagaaaa cccttatttt aagttgtaac ttaaaataag ggttttactt attaaatttc
     1621 cgtgacatta attaataatc atttaaaaat tagttaatat taaaatccct agtatctcta
     1681 tataattaaa aagtcttcaa tgacaaacaa tagatgacaa catattaagg agaaaaatca
     1741 tcatgaagca atcaactatt ctaaaagtaa gtttagcagt aggtatttta acaacaggtg
     1801 tggggataca cagtcaggca gccgcattcg ctagcgaagc acatgcccaa aatgttcact
     1861 ctgaagcgca acaacttaaa gattattact ctaaaactta ttttgaatac aacgacgtga
     1921 ctggttatgt agaagataat aacaagttaa gtgtcgtaac acctcaggaa acattagtgt
     1981 ccgtttcatt agtaggaaag gacttatcaa aatatacaga taaagcaaac gggtataacc
     2041 atttagacct ttttgtggtg cctgagggaa cagatagaag cgccgaaacg aaatctattg
     2101 ggggcattac aaaaacgaat caacgttcat actacgatta cgtgaaaaaa cctaatatca
     2161 tcataaataa aaagtatggt gagctaactt caagcatgag cacaaatgac ttttcgatta
     2221 acaaagaaga agtgtcttta aaagaattag actttaaact tcgtcaaaaa ctgattaatg
     2281 aatatggttt ataccaaaac ggttcaagta atggaaaaat tgtcatcaaa attggggata
     2341 atgataaaga catcatgact ttagagttaa ataaaaagtt acaagaacac cgtatgagcg
     2401 acacggtgga tgtcaataaa atccaacaaa ttacgataga tctgtaaaaa gttcta
//
LOCUS       DANHOL010000214         2360 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.217, whole genome shotgun sequence.
ACCESSION   DANHOL010000214 DANHOL010000000
VERSION     DANHOL010000214.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 2360)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2360)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2360
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.217"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            <1..1165
                     /locus_tag="PTC08_002296"
     CDS             <1..1165
                     /locus_tag="PTC08_002296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020220253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="LCP family protein"
                     /protein_id="HDK5683752.1"
                     /translation="KFLLYLLALMLIIVPTIFAFTLFNSSKNAFDDSFSQSDQRQSQL
                     RDSKVNAAKQPISILFLGIDDSSTRRQNGQSAENARTDAMILSTMNPDKHQIRLVSIP
                     RDTLSYIPEVGYYDKITHAHAYGGPEASMRTVEANLNVPVDYYVRINMEAFAKTVDEL
                     GGIEYDVPYDLNEPNTMDKGRIKLKKGKQQLNGDEVLAVTRTRKQDSDLKRGQRQMEV
                     LKILFKKAQDTKSLHKLDDIIEIVGKNSKHNLSYSEIKALATNYLANDVDIQSQQLKG
                     ENELLNGIYYINPDVDNLIETSNTLRKDLGLAPFKDRNQFLVERVKAYYGEIPPLTYL
                     EESLLQNVKKLLPKDENNDQNNKGESADNTNGAMHNQQQGVPYQNQNPDGSYY"
     gene            1180..1650
                     /locus_tag="PTC08_002297"
     CDS             1180..1650
                     /locus_tag="PTC08_002297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000088431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2538 family protein"
                     /protein_id="HDK5683753.1"
                     /translation="MARHTQEKIRHINGIFNMLEQQIIHSKDMAHFRQELFYVNHTHR
                     ENYEALLLYYQESETNPVINAACYIVALPEIFDAIDVFESPLPFSWVYDENGLTPAMQ
                     NLSVPIQYLVAAALEVTDVNIFKPSGYTMGMNNWNLVQMRLFWQYTALVRQQAM"
     gene            1845..2273
                     /locus_tag="PTC08_002298"
     CDS             1845..2273
                     /locus_tag="PTC08_002298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDK5683754.1"
                     /translation="MIKTVETEQEYQDVLVVRETVFIDEQGVSRDEEIDEHEHTAQYI
                     IAYNDDQQPIATARFRHVEGSAKVERVAVLKSARGLGIGKQLMQYLEQVAYEQGHRHF
                     KLGAQTHAIPFYESLGYHTYGEEFLDAGIPHYHMEKHLTS"
BASE COUNT          806 a          457 c          419 g          678 t
ORIGIN      
        1 taaattttta ctctatttat tagctttaat gcttataatt gttcctacaa ttttcgcatt
       61 cactcttttt aattcatcaa agaatgcttt tgacgactcg ttctcacaat cggatcaacg
      121 acaatcccaa ttaagagatt caaaagtcaa tgctgccaaa caacctatct ctattttatt
      181 tctaggcata gatgatagca gtacaagaag acaaaacgga caaagcgctg aaaatgcacg
      241 taccgatgcg atgattttat caacgatgaa tcctgacaaa catcaaattc gtttggtcag
      301 tattcctcgt gacacgttaa gttacattcc agaggtcggt tactacgata agattacgca
      361 cgcacatgca tacggtggac cagaagcttc aatgcgtacc gtagaagcaa atttaaatgt
      421 ccctgttgat tactatgttc gcattaatat ggaagctttt gccaaaactg tagacgaact
      481 tggcggtatt gaatatgatg tcccatacga tctgaacgaa ccgaatacaa tggacaaagg
      541 tcgtatcaaa ctaaaaaaag gaaagcaaca acttaatggt gatgaagtgc ttgctgtgac
      601 acgtacgcgt aagcaagact ctgatttaaa acgcgggcaa cgacaaatgg aagtattaaa
      661 aatattgttc aaaaaagccc aagacactaa atctttacac aaattagatg atatcattga
      721 aattgtaggg aaaaattcaa aacacaactt aagttactca gaaatcaaag cactcgcgac
      781 aaattactta gcaaatgatg tagacattca atcacaacaa cttaaaggtg aaaatgaatt
      841 actgaatggt atttattaca ttaatcctga cgttgataat ttaattgaaa cgtctaacac
      901 tttacgtaaa gacttaggtt tagcaccttt taaagacaga aaccaatttt tagtggagcg
      961 agtgaaagca tactatggag aaattccacc actcacatat ttagaagaat cattgttaca
     1021 gaacgttaaa aagctcttgc caaaagatga gaacaatgat caaaacaata aaggtgaatc
     1081 agctgataac acaaatggcg caatgcataa tcagcaacaa ggagtaccgt atcaaaacca
     1141 aaatcctgat ggttcatact actaatagga ggttcacaca tggcacgtca tacacaagaa
     1201 aaaattagac atatcaatgg catttttaat atgctcgagc aacaaattat tcacagtaaa
     1261 gacatggcgc attttcgtca agagttgttc tatgtaaatc atacacatcg tgaaaattat
     1321 gaagcgctat tgctttatta tcaggaaagt gaaacgaacc ctgtcatcaa tgccgcatgt
     1381 tatatcgtcg cccttcctga aatttttgat gcgattgatg tctttgaatc gccattaccg
     1441 ttttcttggg tttatgatga gaatggttta acacccgcaa tgcaaaattt aagcgtgccg
     1501 attcaatatc ttgtcgctgc ggcattagaa gtgacagatg tgaatatttt caaaccttct
     1561 ggctatacta tgggtatgaa caactggaat ctcgtacaaa tgcgtctctt ctggcaatat
     1621 actgcccttg tacgccaaca agcgatgtaa caccgtcaaa tacgaattaa tgataagtat
     1681 ccgtcatttt tacaatgagg gtactttttt atatcattac aaatagtcct caacgcgtat
     1741 catctgtcgc gctgttattt caattttaaa aatactttta ttctacagct caatcgatta
     1801 tgataaacat taaattcacg ctctttatga aaggaatgtg gcctatgatt aaaacagtag
     1861 aaacggaaca agaatatcaa gatgtcctgg tcgttcgtga aacagtattt atcgacgaac
     1921 aaggtgtctc tcgtgatgaa gaaattgatg aacatgaaca taccgcacaa tatatcatcg
     1981 cctataacga cgaccaacag cctatcgcaa cagcgcgttt tcgtcatgta gaaggcagtg
     2041 ctaaagttga acgtgtcgcc gtgttgaaaa gtgctcgtgg cttaggtatt ggcaaacaac
     2101 tcatgcaata tcttgagcaa gtcgcatatg aacaaggcca ccgtcatttt aagttaggcg
     2161 cccaaacgca cgcgatccct ttttatgaat cattaggcta tcatacgtac ggcgaagaat
     2221 ttttagatgc aggtatccct cattatcata tggaaaagca cctcacttct tagacttttc
     2281 ccacttcatt catattaatg attcgaattg agatatgtcc taacttaggc gatttcaatt
     2341 cgatcattta atatcattat
//
LOCUS       DANHOL010000215         2359 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.218, whole genome shotgun sequence.
ACCESSION   DANHOL010000215 DANHOL010000000
VERSION     DANHOL010000215.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 2359)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2359)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2359
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.218"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            4..654
                     /locus_tag="PTC08_002299"
     CDS             4..654
                     /locus_tag="PTC08_002299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease"
                     /protein_id="HDK5683755.1"
                     /translation="MLFFNQLGEILTSEMLSLILICIVFLGCLYQLYSRRINFSGIIA
                     LFALLFLFLGFIIQGSFTLITLMLFVIGVLLLLVELFVFGAVLGIIGITLIIISFVTL
                     GDNLSMMLFNVVFASILTLIEWVVLVKFFKKSIAIFDKVVLKDSTSKESGYTSHNDRS
                     HLVGEIAVSYTDLRPSGIIILNNERIDAVSEGSFISKDMKVAIIEVEGTRVVVREI"
     gene            673..1668
                     /gene="floA"
                     /locus_tag="PTC08_002300"
     CDS             673..1668
                     /gene="floA"
                     /locus_tag="PTC08_002300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613783.1"
                     /note="flotillin-like protein involved in membrane lipid
                     rafts; Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flotillin-like protein FloA"
                     /protein_id="HDK5683756.1"
                     /translation="MLTSGLITFIVIAVLIIVALLILFSFVPVGLWISALAAGVKVGI
                     GTLVGMRLRRVSPRKVIGPLIKAHKAGLHLTTNQLESHYLAGGNVDRVVDANIAAQRA
                     DINLPFERGAAIDLAGRDVLEAVQMSVNPKVIETPFIAGVAMNGIEVKAKARITVRAN
                     ISRLVGGAGEDTIIARVGEGIVSTIGSSEHHTQVLENPDNISKTVLSKGLDSGTAFEI
                     LSIDIADVDISKNIGADLQTEQAIADKNIAQAKAEERRAMAVAQEQEMKARVQEMHAK
                     VVEAEAQVPLALAEALRSGNIGVKDYYNLKNIEADTGMREAINKSTQNNNSTPEQ"
     gene            1682..2296
                     /locus_tag="PTC08_002301"
     CDS             1682..2296
                     /locus_tag="PTC08_002301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683757.1"
                     /translation="MSIGTIIFIITIAISLFSAVSDKSHEKRQKQNKPQNNKKETAPQ
                     KSGGFLENVQQKLEEFERELSDFDEPNEPSQPQPAQQLKRKKTVRPEPTQFEKQAEAT
                     KPKTQENQKQAIEMQQMLDQHMRELDQQLDKERQKRIAHIERRAKNIIQDNYLSHRTK
                     QFKLKQLLEENNTTAIQQGDLTFSNNEVVNGLIWSEVLNRPKQL"
BASE COUNT          783 a          378 c          482 g          716 t
ORIGIN      
        1 caattgcttt ttttcaatca actaggagag attttaactt ctgaaatgct ttctcttatt
       61 ttaatttgta ttgtttttct tggatgtttg tatcaacttt attcacggag aattaatttt
      121 tctggaatta tagcgctttt tgccttattg tttttatttt taggttttat catccaaggt
      181 agttttacat tgattacatt gatgttgttt gttattggtg tgctcttact tttggttgaa
      241 ttgtttgtat ttggtgcagt gttaggtatt attggcatta cacttattat tataagcttt
      301 gttacgcttg gtgataattt atcaatgatg ttatttaatg tcgtgtttgc atcaattttg
      361 acattaatcg agtgggtggt tttagtgaaa tttttcaaaa aaagtatagc gatatttgac
      421 aaagtagtat taaaagattc aacgagtaaa gaatctggct acacatctca taatgatcgc
      481 tctcatctcg ttggcgaaat tgcagtgagt tatactgatt tacgtccttc aggtattatt
      541 attttgaaca acgagcgtat tgatgctgtt tctgaaggtt cttttattag taaagacatg
      601 aaagttgcaa tcatcgaggt tgagggtaca cgtgtcgttg taagagaaat ttaaatataa
      661 ggagcgaatg tcatgttaac aagtggatta attactttca ttgttattgc cgtattaata
      721 attgttgcgt tattaatttt attttcgttt gtcccagtcg gcttatggat ttctgcatta
      781 gctgctggtg taaaagtagg aattggtaca ttagtaggga tgcgtttacg tcgtgtgtca
      841 ccgcgtaaag tcattggccc actcattaaa gcgcataaag caggtttaca tttaacaaca
      901 aaccaacttg agtctcacta tttagcaggt gggaacgtgg atcgtgttgt tgatgcgaat
      961 atcgcggcgc aacgtgcgga tattaattta ccgttcgaac gtggtgcagc tatcgattta
     1021 gcaggtcgtg acgtattaga agctgtacaa atgtcagtca accctaaagt cattgaaaca
     1081 ccatttattg cgggtgttgc gatgaacggg attgaagtaa aggcaaaagc gcgtattact
     1141 gtacgtgcaa acatttcacg cttagtcggt ggtgcgggtg aagatacgat tattgcccgt
     1201 gtaggtgaag gaattgtctc aacaattggt tctagtgaac accatacaca agttttagaa
     1261 aaccctgata acatttctaa aactgtttta agtaaaggtt tagattcagg aacagccttt
     1321 gaaattttat ctattgatat tgctgacgta gatattagta aaaacattgg tgccgactta
     1381 caaactgaac aagccattgc agataaaaac attgcacaag ccaaagcgga agagcgtcgt
     1441 gcgatggccg ttgcacaaga gcaagaaatg aaggcacgtg tacaagaaat gcatgcaaaa
     1501 gtagtcgaag cagaggcaca agtacctcta gcattagcag aagcattgcg ttctggtaat
     1561 atcggtgtaa aagattatta taatctaaaa aatattgaag cagatacagg gatgagagaa
     1621 gccattaata aaagcactca aaacaataac tcaacacctg aacagtaatt gaggtgatta
     1681 gatgagcatt ggaacgatta tatttattat caccattgct atttctttat ttagtgcagt
     1741 tagtgataaa agtcatgaga aacgccaaaa acaaaacaaa cctcaaaaca acaaaaagga
     1801 aacagcacct caaaaaagtg gcggtttcct agagaatgtc caacaaaagc ttgaagagtt
     1861 tgaaagagaa ctttcagatt ttgatgaacc aaacgaaccg tctcagccac aaccagcaca
     1921 acaactgaaa cgtaaaaaga cggtaagacc tgaacctact caattcgaaa aacaagctga
     1981 agcgacaaag ccaaaaacgc aagaaaatca aaagcaggct atagaaatgc aacaaatgtt
     2041 ggatcaacat atgcgtgaac tcgatcaaca acttgataaa gaaagacaaa agcgaattgc
     2101 acacattgaa agacgcgcca aaaatatcat tcaagataat tatttatcgc atcgtacaaa
     2161 gcaatttaaa ttaaagcaat tgttggaaga aaacaataca actgctatcc aacaaggcga
     2221 tttaacattt tctaataatg aggtcgtgaa tgggctcatt tggtcagaag ttttaaaccg
     2281 accaaagcag ttataaaact ctcttaagat gaggcaagaa atgatttcag tagagcagct
     2341 gagattgtcg cttgcctca
//
LOCUS       DANHOL010000216         2355 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.219, whole genome shotgun sequence.
ACCESSION   DANHOL010000216 DANHOL010000000
VERSION     DANHOL010000216.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 2355)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2355)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2355
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.219"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            <1..812
                     /locus_tag="PTC08_002302"
     CDS             <1..812
                     /locus_tag="PTC08_002302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="type III-A CRISPR-associated RAMP protein Csm5"
                     /protein_id="HDK5683758.1"
                     /translation="NNPRERTLKFFLEQEKVKKSEWHKFVSFSQRVNQGKKENQKNSK
                     KGLNDIHLMVRDGQNEVYIPGSSLKGALKTMIVAKYNNEDDKTYYSKIKVSDSLPIEE
                     NCLSIYQKIDINKKEVGMPLYRECIEVGTEVSFQISIEDQVISIEDLESCIKDFYRNY
                     YEKWLAGFKETYGGRRFAFGGGFPDMAQNNIIYIGGGVGFASKTLHYQQHEYTLAKRE
                     SFKVLRSRYKSVYGKMKEIPRNVPVVLKGTVNLAKNEYYQQGMCQISFNKK"
     gene            830..2104
                     /gene="csm6"
                     /locus_tag="PTC08_002303"
     CDS             830..2104
                     /gene="csm6"
                     /locus_tag="PTC08_002303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002502662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III-A CRISPR-associated protein Csm6"
                     /protein_id="HDK5683759.1"
                     /translation="MKVLFSPIGNTDPWNHNYDGAMLHIVRHYKPEYVYLYFTESIWK
                     GTERIPGRKSFDWESIVQSVSPTTKVKLIIENITHEHDFDSYKETFHDHIQQIRDSHD
                     EPEILLNVTSGTPQMESTLCLEYITYPEQKLCIQVAAPDPSNNGMRHFANPNRQLEEL
                     AEVNQRELNAATRSRVINIISFREAMIRSQLKELIKHYDYEAAYHLINENPEFRNSKI
                     LKEELLALTKQIKTHTVFPEIMEKYTNKDLQKVLLHYLLLNMRYKRQDVAETLIRVKS
                     IAEYILRYYIDQKWPGFIIDKKGKPYITHNTSKNSALVGKYKLYLLQQGKNFDAKYTV
                     SLPAYIDIIVALDQKSPFLNASQSIININDLRNSIAHQLEPLKLESKKNMEKIKKAVE
                     AIPTMISHSFPDMRKEDFDFLEYKNEKLIGLL"
     gene            2158..>2355
                     /locus_tag="PTC08_002304"
     CDS             2158..>2355
                     /locus_tag="PTC08_002304"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="CRISPR-associated endoribonuclease Cas6"
                     /protein_id="HDK5683760.1"
                     /translation="MGSVLHGVLMDQFSDDLANILHHESAYSPLKQRIYFDDNQQFLW
                     EIVSLSQQLTQELLELFGKEKK"
BASE COUNT          882 a          328 c          442 g          703 t
ORIGIN      
        1 ccaataatcc cagagagaga acattaaagt tttttctgga gcaagaaaag gttaaaaaat
       61 cagaatggca taagtttgtg agttttagcc aacgtgtgaa tcaaggaaaa aaagaaaatc
      121 aaaagaatag taaaaaaggc cttaatgata ttcatttaat ggtgagagat ggtcaaaatg
      181 aggtatacat acctggcagc tcgcttaaag gtgcactcaa aacaatgatt gtcgcaaaat
      241 ataacaacga agatgataaa acctattata gtaagattaa agtgagcgac tcattgccta
      301 ttgaggaaaa ttgtctgagt atctatcaaa aaattgatat taataaaaaa gaagtaggaa
      361 tgccattata tagagaatgc atagaagtag gcactgaagt ttcatttcaa atctctattg
      421 aagatcaagt catttctata gaggaccttg aatcgtgcat taaagatttt tatcgtaatt
      481 actatgaaaa atggttggcc ggttttaaag aaacatatgg tggtcgacgt tttgcatttg
      541 gtggcggatt tccggacatg gctcaaaata atatcatata tattggtggt ggtgtaggat
      601 ttgcgagtaa aacgttgcac tatcaacaac atgaatatac tttagcaaag cgagaatctt
      661 ttaaggtatt aagaagtaga tataaaagtg tatatggcaa aatgaaagaa atccctagaa
      721 atgttcctgt tgttttaaag ggaacggtaa atttagctaa aaatgagtac tatcaacaag
      781 ggatgtgtca aattagtttc aacaaaaagt aaaatgtggg agggttattt tgaaggtatt
      841 atttagtccc ataggtaata cagacccatg gaatcataac tatgatggtg ctatgttaca
      901 tattgttaga cactataaac ctgagtatgt ttacttgtat tttactgaga gtatttggaa
      961 aggcactgaa cgtatacctg gtagaaaaag ttttgattgg gagtcgattg ttcaatctgt
     1021 atctcctaca acaaaggtta aacttattat agaaaatatt acgcatgagc atgattttga
     1081 tagttataag gaaaccttcc atgatcatat tcagcaaatt agagatagtc atgacgaacc
     1141 tgaaatattg cttaatgtta caagcggtac accacaaatg gagtcgactt tgtgtttaga
     1201 atacattaca tatccagaac aaaagttgtg tattcaagtt gctgcccctg acccgtcgaa
     1261 taatgggatg cgtcattttg cgaatcctaa ccgtcaattg gaagaattgg cggaagttaa
     1321 tcaaagagaa ttaaatgcag ctacgagatc tagagtgatc aacattatca gttttcgcga
     1381 ggcaatgata cgttcgcaat tgaaagagct tattaaacat tatgattacg aggcagcata
     1441 ccatcttatt aatgaaaatc cggaatttag aaacagtaag atattaaagg aagaattatt
     1501 agcgctaaca aaacaaatta aaacacatac tgtatttcct gaaattatgg aaaagtatac
     1561 taataaagat ttacagaaag tcttattaca ttatttgcta ttaaacatga gatataagcg
     1621 tcaggatgta gcagagacgc tcattcgagt gaaatctatt gctgaatata ttcttcgtta
     1681 ttatatcgac caaaaatggc caggtttcat tatagataaa aaaggtaagc catatataac
     1741 tcataataca tcaaagaatt cagcgttagt tggcaaatat aaattgtatt tgctacagca
     1801 aggtaaaaac tttgatgcta aatatacagt gagtctaccg gcatatattg atatcatagt
     1861 tgcacttgac cagaagtcac catttttgaa tgcatctcaa tccatcataa atattaatga
     1921 tttaagaaac tccattgcgc accaattaga accacttaaa ctagaaagta agaagaatat
     1981 ggaaaaaata aaaaaagcag tagaagcgat tcctacaatg atatcgcatt cgtttccgga
     2041 tatgagaaaa gaagattttg attttctaga atataaaaat gaaaaactaa tagggttatt
     2101 ataatgaata aaataacagt taatttaaac ataccatcta ctatgcgtgc ttcttatatg
     2161 gggagcgttc tccatggtgt cttaatggat cagttttctg atgatttagc caacatatta
     2221 caccatgaat ctgcttatag tccattgaaa cagcgtattt atttcgatga taatcaacag
     2281 tttttgtggg agattgtaag tttatctcaa caattaacac aagaattgtt agaactattt
     2341 ggtaaagaaa aaaag
//
LOCUS       DANHOL010000217         2341 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.220, whole genome shotgun sequence.
ACCESSION   DANHOL010000217 DANHOL010000000
VERSION     DANHOL010000217.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 2341)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2341)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2341
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.220"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(88..369)
                     /locus_tag="PTC08_002305"
     CDS             complement(88..369)
                     /locus_tag="PTC08_002305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683761.1"
                     /translation="MTEEEKIKRSRFKRNVIAIPYIIFGFIVALLFIFSPDIIWLVTI
                     FGIFMVYNVIAMFIAFLFKYGRTALYLLMMTLLMAGAFALYLYMLLEFH"
     gene            complement(452..1360)
                     /locus_tag="PTC08_002306"
     CDS             complement(452..1360)
                     /locus_tag="PTC08_002306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HDK5683762.1"
                     /translation="MDQITINQHVKYSRVIQGFFRAHQWQKSTQAMNRFIHELVERGV
                     TTMDHADIYGHYTVEKMFGDALALSPELRDKIQIVTKCGIVLPNHIYPEQTDHRYDLS
                     KQHIKRAVERSLKSFQVEYLDSLLIHRPSPLMKPCEITDALKDLVQEGKLLSFGVSNF
                     QRPQYELLNRCLKDDKFHIAVNQIEISPYHLEAFHDGTIDDMYREGVKLMAWGPFAGG
                     RLFDENDPVAARVLPVITRIAKAHHTSVAAVVSAWFKKNPADIMPIIGTERLERVDEV
                     IDGLQLELHDQEWFDIFTAAQGFDIP"
     gene            complement(1387..2316)
                     /locus_tag="PTC08_002307"
     CDS             complement(1387..2316)
                     /locus_tag="PTC08_002307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HDK5683763.1"
                     /translation="MFKKQTSLILIHGFLGSGKTTFLNHYMTQILKKDEKVALIVNEF
                     GDFDVDSHLLSQYHVQQSALQGCICCDIQHDLIAHLYQLTRDAEVDYIIVEATGVANP
                     IDILVACQDPLLVDAFSSIETIGLVDSVRFIKRHDNTAQTKALMEDQVRASQTILVNK
                     VDLIEDDAQLQMVIEDIKALSPKSRIVLTQYGETLKTIEKGANAQNVDVTGFHSHTHA
                     HYTSLQYQFNSAVSQEALVQFILRLPDNVLRLKGYIRLREQPDEIFLIQYSEGVPAIE
                     SVGHLTLPTSIIIIGEQLDKAMLRNQLDMLQFT"
BASE COUNT          734 a          480 c          394 g          733 t
ORIGIN      
        1 ccgattcatt aaaattaata aatgcaatac acaccgaaaa aacacgccta catggacgga
       61 caccatgtaa acgtgtgcat atttcaccta atgaaattca agtagcatat agagataaag
      121 cgcaaatgca ccagccatca ataaggtcat catcaacaaa tataatgcag tgcgcccata
      181 tttgaataaa aaggcaataa acatcgcgat gacattatac accataaaga taccaaaaat
      241 agtgacgagc caaatgatat ccggtgaaaa gataaacagt aatgcaacga taaagccaaa
      301 gatgatgtac ggtatcgcaa taacattacg tttgaaacga ctgcgcttaa ttttttcctc
      361 ttctgtcata tttttccctc tcaattccta ataatcacgt ttaattgtac taaagtttgc
      421 tgtacgttga cttccatgag atgtgacaat tttatggaat gtcgaatcct tgtgcagccg
      481 taaaaatatc gaaccattct tggtcatgca attcaagttg gagtccatca atcacttcgt
      541 caacacgttc gagtcgttca gttccaataa tgggcatgat atcagctgga ttctttttaa
      601 accatgcaga cactaccgct gcgactgaag tatggtgtgc ttttgcaatt cgtgttatta
      661 ctggaaggac acgtgctgca actgggtcat tttcatcaaa taaacgtccg cctgcaaacg
      721 gtccccaagc cattaacttc acaccttcac gatacatatc atcaatggtg ccgtcatgaa
      781 acgcttctaa atgatacggt gaaatttcaa tttgattcac tgcgatatga aatttgtcgt
      841 ctttcaaaca acgatttaat aattcatact gtgggcgctg aaaatttgat acaccaaatg
      901 acaacaattt cccttcttgg actaaatctt ttaaagcatc agtgatttca cacggtttca
      961 ttagcggcga tggtcgatga atcaacaaac tatccaaata ctctacttga aatgacttta
     1021 atgaacgctc aactgcacgt ttaatatgct gtttacttaa gtcataacga tggtcggttt
     1081 gctctggata aatatgattc ggcaggacaa ttccacactt cgttacgatt tgaattttat
     1141 cgcgcagttc aggtgacaaa gccaatgcat ctccaaacat tttttccaca gtgtaatgtc
     1201 cgtaaatatc ggcatggtcc atcgttgtca cgccacgctc aacaagttca tgaatgaaac
     1261 gattcatagc ttgtgtcgat ttctgccatt gatgcgctcg aaaaaaacct tgtatgactc
     1321 tagaatattt cacatgctga ttgatagtga tttgatccat ttaaacaccc cttgaataat
     1381 ccagaattaa gtaaattgta acatatccaa ttgatttctt aacatggcct tatctaattg
     1441 ctcgcctatg atgataatag aagttgggag cgtcaagtga cctacacttt caatagcggg
     1501 caccccttct gaatattgaa ttaagaaaat ctcatcaggc tgttcgcgca aacggatata
     1561 gccttttaat cgcaatacat tgtcaggtag ccttaaaatg aattggacaa gtgcttcttg
     1621 agagactgca ctattgaatt gatattgtaa gctcgtataa tgtgcatgtg tatgactatg
     1681 aaaccctgtc acatcgacat tttgtgcatt tgcacctttt tcaattgttt tcaatgtttc
     1741 accgtattgt gtgagaacga tacgactttt aggtgatagc gccttaatat cttcaatcac
     1801 catttgaagt tgtgcgtcat cttctattaa atccacttta ttaaccagta tcgtttgact
     1861 cgcacggact tgatcttcca ttaaagcttt cgtttgtgca gtattgtcat gtcgttttat
     1921 aaatctgaca ctatccacca agcctatcgt ttctattgat gaaaatgcat ccactaataa
     1981 agggtcttga caggcaacca aaatatcaat cggattcgca acaccagtcg cttctacaat
     2041 gatataatca acttctgcat cacgtgttaa ttggtacaaa tgcgcaatta aatcgtgttg
     2101 aatatcacag caaatacatc cttgtaatgc tgattgttgt acatgatatt gactcaaaag
     2161 atgactgtct acatcaaaat caccaaattc atttacaatg agtgcaactt tctcatcttt
     2221 ttttaatatt tgcgtcatat aatgatttaa gaatgtggtt ttgccacttc cgagaaatcc
     2281 atgtatcaat atgagcgatg tttgtttttt aaacataaat ttaacccttt ctctcaaaaa
     2341 a
//
LOCUS       DANHOL010000218         2341 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.221, whole genome shotgun sequence.
ACCESSION   DANHOL010000218 DANHOL010000000
VERSION     DANHOL010000218.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 2341)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2341)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2341
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.221"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(443..1345)
                     /locus_tag="PTC08_002308"
     CDS             complement(443..1345)
                     /locus_tag="PTC08_002308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HDK5683764.1"
                     /translation="MKRNVMSNLVGRYLSQQRHLKFKTQAEVDVFLEKRRVLNQSKHK
                     QPDQINVKSNLVKDMFDEMQVFRFNFGHHIKNKILYIYGGTFVFQPSVFHWRFMDKLA
                     YETLHEIVLPIYPKAPEFTYRETHEAIEQAYRRLLKETEPENIVIMGDASGGNMALSF
                     AQKLMEQEELPLPGKLYLISPWLDISLSNPEITEQVQKKDPIHNIFSLQSIAKVWADD
                     LERKNPRISPMYGPVRGLPPVYMFGGTCEVFYPDMRKLADYFEAEQQPIHFYEYRDMV
                     TAFPLYPIVESRKVLKQIRKTIDA"
     gene            complement(1468..1803)
                     /locus_tag="PTC08_002309"
     CDS             complement(1468..1803)
                     /locus_tag="PTC08_002309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HDK5683765.1"
                     /translation="MEVLKTLDAYEAFVANHQIAVVHVSRDNCSVCHAVLPRIQELVA
                     RYEGVALGNVSADDVPEIAGALSIFTVPVDIIFLEGKEMHREGRFIDLERIESQLNTI
                     YEGVKGSNL"
     gene            1964..>2341
                     /locus_tag="PTC08_002310"
     CDS             1964..>2341
                     /locus_tag="PTC08_002310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683766.1"
                     /translation="MKETTRQHPQFQQQFENQPIHRSTYYGKKRRSWVSFILTLIAMV
                     LVAIAAYSMYSETLFKMSFLDENVTFDKLKVIADQLTAQSFIDTSNIEQTLNYVIMGL
                     NFFFILVLVNIIFAILTLIFNRTI"
BASE COUNT          749 a          491 c          351 g          750 t
ORIGIN      
        1 tgattttgaa ctttcttaaa atgaatctta atagtcaatt tactgaccgt catttcaatt
       61 cttataaaca ttaccaccca ttttccacct taaattaagc gaaatatacg cattacttta
      121 aggtcaacaa gagaaataat acagtaaaat gttataaaaa taatgccatc attcctttag
      181 catagtttaa aacaaataaa aaggcatacc caatcaatca tttgtggtat cctttttcat
      241 acgtagtcat tttcctattc acatcagcgt catgataaac aaaacttaat cacaaactaa
      301 tgatgcttat tggtttgatc aatgagtagt aacatatcgt tagattgcaa aaaaccgtgc
      361 aaaactcctg aaacatcagc ccttaagaaa gcacaacacg attcatgcaa tctgtatagc
      421 catactgatt tatttgaaac cctcacgcat caatcgtttt tcgaatctgc ttcaacactt
      481 tccttgactc aacaatcggg tacaacggaa aggctgtcac catatcgcga tactcataaa
      541 aatgaatcgg ctgttgttcc gcttcaaaat aatctgctaa ctttctcata tcaggataaa
      601 acacttcaca tgtgccccca aacatgtaaa caggtggtaa tcctctcaca ggtccataca
      661 tcggtgaaat acgcgggttt ttacgttcca aatcatcggc ccacacttta gcaatcgatt
      721 gtaaactgaa aatattgtgg atcggatctt ttttctgcac ttgttcagtg atctccggat
      781 tggatagcga aatatctaac caaggcgaaa taagatagag ctttccaggc agtggcaatt
      841 cttcttgttc cattaatttt tgcgcaaaac taagcgccat atttccacct gaagcatcac
      901 ccataatgac gatattttca ggttctgttt cttttaataa gcgacgataa gcttgctcaa
      961 tcgcctcatg cgtttcacga tatgtaaatt caggcgcctt aggataaatc ggcaacacaa
     1021 tttcgtgtaa cgtttcatac gccaacttat ccataaaccg ccaatgaaaa acagagggtt
     1081 gaaagacgaa agtgcctcca taaatatata agattttatt tttaatatgg tgaccaaaat
     1141 taaagcgaaa cacctgcatc tcatcaaaca tatctttgac taaatttgat ttcacattaa
     1201 tttgatctgg ctgtttatgc ttggattgat ttaacacacg tctcttttct aaaaacacat
     1261 ccacttctgc ttgggtttta aatttgagat gacgttgttg cgacaagtat ctccccacta
     1321 aattactcat gacatttcgt ttcaattgta tccctcactt tttctcaaca atcgtagtgt
     1381 atcacttgaa aactttgctt atatatttat tttatatgtt atccctcaga gcgcaataac
     1441 tgttttcaca aaatcatctt catattatca taaatttgag cctttgacgc cttcataaat
     1501 ggtattcagt tgtgattcga ttcgttctaa atcaataaag cgaccttcac gatgcatttc
     1561 tttaccttca aggaatatga tatcgacagg gacagtaaaa attgacagcg ctcctgcaat
     1621 ttcagggacg tcatctgcac tgacattgcc taacgcaaca ccttcataac gtgcaactag
     1681 ctcttgaatc cgtggtaaaa cggcatgaca tacagaacaa ttgtctctcg aaacgtgaac
     1741 gaccgcgatt tgatggttgg caacaaacgc ttcatacgca tccaatgttt ttaatacttc
     1801 catcttgcaa cctccttttc catttcccat tatgaactta tctcagttct atcatatttt
     1861 ataaaaaagc actatgaata tgattctagg tgtactataa tgcataattg tattagcgaa
     1921 agattttaac aaagcttgtt caatgatata ggaggcgtta catatgaaag agaccacacg
     1981 acaacacccc cagtttcaac aacagtttga aaaccaacct atccaccgta gtacatatta
     2041 tggtaaaaag cgacgttcat gggtgagctt tattttaaca ctgatcgcta tggtactcgt
     2101 tgcgattgct gcatatagta tgtatagcga aactttattt aaaatgagct ttcttgatga
     2161 aaatgtcaca ttcgataaac ttaaagtgat tgccgatcaa ctgacagcac aatcatttat
     2221 cgatacatca aatattgaac aaaccctcaa ttatgtaatt atgggtctca attttttctt
     2281 cattttagta ctggttaata ttatttttgc gattttgaca ctcatcttta accgcaccat
     2341 t
//
LOCUS       DANHOL010000219         2338 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.222, whole genome shotgun sequence.
ACCESSION   DANHOL010000219 DANHOL010000000
VERSION     DANHOL010000219.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 2338)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2338)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2338
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.222"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            212..1309
                     /gene="ispG"
                     /locus_tag="PTC08_002311"
                     /gene_synonym="gcpE"
     CDS             212..1309
                     /gene="ispG"
                     /locus_tag="PTC08_002311"
                     /gene_synonym="gcpE"
                     /EC_number="1.17.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002194540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin-dependent
                     (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase"
                     /protein_id="HDK5683767.1"
                     /translation="MTHRKNTRPVKVGDLTIGGADEVVIQSMTTTKTHDVEATVAEIK
                     RLEEAGCQIVRVACPNEEDAHAIKDIKAQINIPLVVDIHFNYKLALIAIENGADKIRI
                     NPGNIGRREKVEAVVEACKAKGIPIRIGVNAGSLEKHILKKYGYPTADGMVESALHHI
                     KILEELDFHDIIVSMKASDVNLAIEAYTKAAKAFDYPLHLGITESGTLFNGTVKSSAG
                     LGAILSLGIGNTMRISLSADPVEEVKVAKSLLKSFGLASNAATLIACPTCGRIEIDLI
                     SIANEVEEYIEKLQIPLKVAVLGCAVNGPGEAREADIGIAGARGEGLLFMKGKTVRKV
                     PEETMVDELKMEIDKLAAEWEENKKQEAAQN"
     gene            complement(1580..>2338)
                     /locus_tag="PTC08_002312"
     CDS             complement(1580..>2338)
                     /locus_tag="PTC08_002312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ISL3 family transposase"
                     /protein_id="HDK5683768.1"
                     /translation="THDIIDILPDRRKHQLEAYFLKFSRKQREKVKTVSIDMFPPYIA
                     LIQDLFPHAEIIIDRFHIVQAINREINRCRVQVMNGFRTKERPQYNKLKRYWKLLLKA
                     PIDLDRMIYQPYRLFKSWQSQYSLVQYLLNLDETLKETYETGHRLLSALKANDIQQLR
                     FILQDAKTKDTSKGLKRVIHTFIKYMPYISSTMRHRHLTNGPIEGINNKIKLIKRVSY
                     GYRNFWNFRNRILMISKVFVSEYKKRIKQQNNVA"
BASE COUNT          769 a          375 c          460 g          734 t
ORIGIN      
        1 atacacattg aaaatactcc aaaagactga tgtgttatca tatcgatgaa aataatgacg
       61 atatcgtgaa atttttgcgt cgttttaaac atattatttt gaataaacac acacgcatat
      121 tgtataatat gtaataacgt tgattaatgg tctctgagaa gtacattttc aagttaaaat
      181 tatttataaa ggagttccta acatggctga aataacacat cgtaaaaata cgcgaccagt
      241 taaagttggt gatctaacta ttggtggtgc agatgaagtt gttatccaaa gtatgacaac
      301 aacaaaaact cacgatgttg aggcaacagt agctgaaatt aagcgattag aagaagcagg
      361 ttgtcaaatt gtacgtgttg cttgtcctaa tgaggaagac gcacatgcaa ttaaagatat
      421 aaaagcacaa attaatattc cactcgtcgt tgatattcac tttaattata aactcgcctt
      481 aattgcgatt gaaaacggtg cggataaaat tcgtatcaat ccaggtaata tcggtagacg
      541 tgaaaaagta gaagctgtag tagaggcatg taaagcaaaa ggtattccga ttcgtattgg
      601 tgtgaatgca ggctcactag aaaagcatat cctaaaaaaa tacggatacc ctactgcaga
      661 tggtatggta gagagtgctt tacatcatat taaaatttta gaagaacttg acttccatga
      721 cattatcgtc tcaatgaaag cgagtgacgt taacttagct attgaagcct atacaaaagc
      781 agcaaaagct tttgactatc cattacatct cggcattaca gaaagtggta cgttgtttaa
      841 tggtacagta aaatcttcag caggtttagg tgcgatttta tctttaggta tcggtaacac
      901 aatgcgaatt tctttatcag cagaccctgt tgaagaagtc aaagtggcta aatcattatt
      961 aaaatcattc ggtcttgcaa gtaacgcagc gacattgatt gcatgcccaa catgtggacg
     1021 tattgaaatt gacttaattt caattgcgaa tgaagttgaa gaatacatcg aaaaactaca
     1081 aattccatta aaagttgcgg tattgggctg tgctgttaat ggtccaggtg aagcacgtga
     1141 agcagacatc ggtattgccg gtgctcgcgg tgaaggatta cttttcatga aaggtaaaac
     1201 tgtgcgtaaa gttcctgaag aaacaatggt tgatgaattg aagatggaga ttgataaatt
     1261 ggctgctgaa tgggaagaaa acaagaaaca agaagcggct caaaattaaa aattccaatt
     1321 cccacataaa atatatgaaa gacaatttag cttcctactt ttgtggggag cttttatatt
     1381 tgattgattt gcaattgact gaactggcct cacgtttcct aaaggctgcc ccctcttaca
     1441 aatacacgat ttgattttac tgttacaatt gtagcaggcg cgtcgtggat gtattaaatt
     1501 tttgaagaac agttgtgtat gtccttgtac taaaattaaa aggttctttg tcaacgtcgg
     1561 ttggtgagac gataacgcat taagcaacgt tattttgttg tttaatgcgt tttttatatt
     1621 cacttacaaa taccttagaa atcattaaga tacgattcct aaaattccag aaatttctat
     1681 aaccataaga aacacgttta atcagtttta ttttattatt aatcccttca atgggtccat
     1741 tcgttaaatg tcgatgacgc atagtacttg agatataagg catgtatttg atgaatgtgt
     1801 ggatgacacg cttgagccct ttcgaagtat cttttgtctt tgcatcctgt aagatgaacc
     1861 gtagttgctg gatatcgttt gctttcaaag cacttaaaag acggtgtcct gtttcatatg
     1921 tctctttgag cgtctcatca agatttaaca ggtattgaac taaactgtac tggctctgcc
     1981 atgacttaaa aagtctgtat ggctgatata tcattcgatc taaatcaatg ggcgctttta
     2041 atagtaactt ccaataacgc tttaatttat tatattgagg tcgctctttt gtcctaaaac
     2101 cattcatgac ttgaacacgg cagcgattga tttcacgatt gatggcttgt acgatatgaa
     2161 agcgatcgat aatgatttcc gcatgaggaa ataaatcctg aatcagagcg atataaggtg
     2221 gaaacatatc tatagagacc gtttttactt tttcacgttg ttttctagag aactttaaaa
     2281 aataagcttc taattgatgt ttgcgacgat caggtaaaat atcaatgata tcatgagt
//
LOCUS       DANHOL010000220         2335 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.223, whole genome shotgun sequence.
ACCESSION   DANHOL010000220 DANHOL010000000
VERSION     DANHOL010000220.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 2335)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2335)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2335
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.223"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            155..1621
                     /locus_tag="PTC08_002313"
     CDS             155..1621
                     /locus_tag="PTC08_002313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612949.1"
                     /note="The YSIRK form of extended signal peptide directs
                     nascent proteins to the cross-wall site, while signal
                     peptides lacking YSIRK direct proteins instead to the cell
                     pole. A large fraction of YSIRK proteins are surface
                     proteins anchored by sortase-mediated processing of a
                     C-terminal LPXTG motif; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YSIRK-type signal peptide-containing protein"
                     /protein_id="HDK5683769.1"
                     /translation="MKDQKQLFSIRKFKRGVSSVVIASLFFTTLSITPALANSETMHP
                     SSKKAQETARSSVNNTSYDTLHSKTTSNVQTLNSENKTSSQVQNQNITTQQVKTQDGQ
                     KAKQNFYKNRDPIVLVHGFNGFTDNLLPSVYPHYWGGEKLNIRQDLEENGYNTYEASV
                     SAFGSNHDRAVELYYYIKGGTVDYGAAHAAKYGHSRYGKTYEGIDKDWKPGKKIHLVG
                     HSMGGQTIRQLEEYLRNGDPEEIAYQKKHGGKISPVFKGGHDGMISSITTLGTPHNGS
                     HASDKLGNEAIVRQIVFDAAQYLAKNKGRVDFGLKQWGLERKKGESLDAYFERILNND
                     QLWRTEDQGFYDLTLEGSAKLNKKTSLNPNIVYKTYTGEATHPTLSGKQKADYDMFFL
                     LTVTANVIGKTAEKDWRVNDGVVSVVSSQHPYNQAWVEATDEIQKGVWQVMPVQEGWD
                     HLDFIGLDTNDTSRSQDELKNFWHSIAEDLVKSEETTK"
BASE COUNT          796 a          461 c          429 g          649 t
ORIGIN      
        1 cccttacaaa tatttagggt gccactttta aagtaaaggg gggatacgta tgtcagcgat
       61 tttagctaaa attttcagct ttttaccaag acttattatt aatatttttg tataaccatt
      121 acaacttcaa ctcattaaaa aaagaggtgg aaaaatgaaa gatcaaaaac aactttttag
      181 tattcgtaaa tttaaacgcg gtgtctcatc agtcgttatc gcatctttgt ttttcacaac
      241 cttatccatc acacccgctt tagccaattc agaaacgatg cacccttctt ctaaaaaagc
      301 acaagaaaca gcgcgatctt cagtaaataa tacatcatat gacacattac actccaaaac
      361 aacaagcaat gtacaaacac tcaattctga aaataaaacg tcatcccagg tacaaaatca
      421 aaacatcacc actcaacaag tcaaaacaca agacggtcaa aaagccaaac aaaactttta
      481 caaaaacaga gacccgattg ttttagtcca tgggtttaat ggatttacag ataatttact
      541 cccatcggtt tatccacatt attggggtgg agaaaaactg aatattaggc aagatttaga
      601 agaaaatggc tacaacacat atgaagccag tgtgagtgca tttggtagta accatgaccg
      661 cgccgttgaa ctttattact atatcaaagg tggtactgtc gattatggtg cagctcatgc
      721 agcgaaatat ggacactccc gttatggcaa aacatatgaa ggtatcgaca aagattggaa
      781 acctggtaaa aaaattcact tagtcggcca tagtatgggt ggacagacca tccgccaact
      841 tgaagaatat ttgcgtaatg gagacccaga agaaattgct tatcaaaaaa agcatggagg
      901 taaaatatct ccagtcttca aaggcggtca cgatggtatg atttcatcca ttacaacatt
      961 aggtacaccg cataacggtt cacatgcctc agacaaactc ggtaacgaag caattgtacg
     1021 tcaaatcgta tttgatgccg cacaatatct tgctaaaaat aaagggcgcg tagactttgg
     1081 attaaaacaa tggggtcttg agcgtaaaaa aggagaatca ctcgatgctt attttgagcg
     1141 cattttgaat aacgatcagt tatggcgtac agaggatcaa ggtttctatg acctcacact
     1201 agaaggttca gcaaaattga acaaaaagac atcattgaac cccaatattg tttacaaaac
     1261 gtacacaggt gaagcgacac atccaacact ttcaggcaaa caaaaagcgg actacgacat
     1321 gttcttctta ttaacagtga cagccaatgt tatcggtaaa actgctgaaa aagattggcg
     1381 cgtcaatgat ggtgtcgtct ctgttgtttc ttctcaacat ccatacaacc aagcctgggt
     1441 ggaggcaaca gatgaaatac aaaaaggtgt ttggcaagtc atgcctgtac aagaaggttg
     1501 ggaccattta gactttatcg gcctagatac gaatgatacg tcacgatcac aagatgaatt
     1561 aaaaaatttt tggcatagta ttgctgaaga tctcgttaag tcagaagaaa caacaaaata
     1621 aggaggtggt gtagatggca ggaacacctt tagaactttt actttcaatt tttaaattat
     1681 taagaaatat tttcaaattt taatgtaatt gatgcaatat tttgttaaac ttgccctccc
     1741 tacgattttc ggtttttgat tgccatcatg gcttcccttt cctaggagct ggcccttcaa
     1801 ctcaattcgg cttgattgaa gcatacatga gatgggagcc gaattggatt ttgggagcag
     1861 tacaggaatc acatgtgtaa caaagatttc gtcgtactgc cccgcaaggc cgactagact
     1921 tctcaaaagc atgcgcattg agaagtcaga cagctactgc gttaaatggt agccactttt
     1981 aaagttaaat gacgttgttt agcctttagc tgatccctca ggagtctcag ccttctgggc
     2041 aatcttatat cgaattcaga gaactgaggg caagtttttg aaacctagca aaacaatagc
     2101 atcaattttt tacctcattc actctagttt tccaactgct ttaaaatcaa ttaacccatc
     2161 aaaaacctat gcatggattg aggctggggg agcatatcat catatcccag ccctctcttt
     2221 ttgttatgct caaaaaattt tagacttcat attgaacgtc aaaattaacg ccacattcct
     2281 cttcaaattc atgtctcaga gcatttaaag taataaaata aaaaatcaaa ttttg
//
LOCUS       DANHOL010000221         2333 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.224, whole genome shotgun sequence.
ACCESSION   DANHOL010000221 DANHOL010000000
VERSION     DANHOL010000221.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 2333)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2333)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2333
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.224"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            8..1459
                     /locus_tag="PTC08_002314"
     CDS             8..1459
                     /locus_tag="PTC08_002314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="APC family permease"
                     /protein_id="HDK5683770.1"
                     /translation="MKKKNQKPDRGDLQQNLSEKFVWAIAYGSCIGWGSFILPGDWIQ
                     SSGPIAASIGIFIGALLMIVIAVSYGALVERFPVSGGGFAFSFLGFGRYVSFFSAWFL
                     TFGYICVVALNATAFSLLIKFLLPDVIEFGKLYTIAGWDVYITEILIASILLLVFMLI
                     AIKGASVSGSLQYYFCVAMVVVVVLLFIGSFFGSNYSLDHLKPYNGTHYGWFQAIIMI
                     VAVAPWAYVGFDNIPQTAEEFDFSPNKTFKLIVYSLLAASLTYILMILYTGWLSGGNS
                     DLWLTGSVTREAFGTIGLAVLSIAIIMGIFTGLNGFLLSSSRLLFSMGRSGIMPSLFS
                     QLHTKYKTPYVAIMFLVAITLIAPWLGRTALTWIVDMSSTGVSIAYLVTCLAAAKLFS
                     FNQNSQTYGPVYKVFAIIGSIFAFIFLLLLLLPFSPASLSMPSYIALGGWTILGLVFF
                     FIRLPKLRRMDKDELTQLILDTRKRDVEKMIEE"
     gene            complement(1669..1846)
                     /locus_tag="PTC08_002315"
                     /pseudo
     CDS             complement(1669..1846)
                     /locus_tag="PTC08_002315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019835342.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
BASE COUNT          655 a          409 c          430 g          839 t
ORIGIN      
        1 aaaaataatg aaaaaaaaga atcaaaagcc tgatcgtggt gacctccaac aaaacctttc
       61 agaaaaattt gtgtgggcca ttgcttatgg ttcatgtatc ggttggggtt cgttcatctt
      121 accaggtgac tggattcaat catccgggcc tattgccgca tcaatcggta tttttatcgg
      181 tgccttatta atgatcgtta tcgcggtaag ttacggtgca ttagtcgaac gctttccagt
      241 gtcaggtggt ggctttgcat ttagtttttt agggtttgga cgttatgtta gctttttctc
      301 agcatggttt ttaacgtttg gatacatatg tgtcgtcgcg ttaaatgcga cagcgttcag
      361 tttattaatc aaatttttac tgccagatgt aattgaattt ggcaaacttt atacgattgc
      421 aggttgggat gtctacatta ctgaaatttt aattgcatct atccttttac tcgtttttat
      481 gttgattgcg attaaagggg caagcgtttc aggttcattg caatattatt tctgtgttgc
      541 aatggtcgtt gtcgtcgtat tactctttat cggatcgttc tttggttcta actattcatt
      601 agatcattta aaaccttata atggtacaca ttatggatgg ttccaagcga ttattatgat
      661 tgtcgcagtc gcaccgtggg cctacgtcgg tttcgataat atcccacaaa ccgcagaaga
      721 atttgatttc tcaccgaata aaacatttaa attaatcgtt tatagtttac ttgcagcgag
      781 tttgacctat attttaatga ttttatatac aggctggcta tcaggtggta atagcgactt
      841 atggttgacg ggttcggtaa cgcgtgaagc attcggtacg attggtctag cggtattaag
      901 catcgcgatt attatgggga ttttcaccgg cttaaacggt ttcttgttaa gctcaagccg
      961 cttgttattc tcaatgggcc gctcaggcat tatgccgtca ttatttagtc aattacacac
     1021 aaaatataaa acgccttacg ttgcaatcat gtttttagtt gcgattacat tgatagcacc
     1081 atggttaggg cgtaccgcgt taacatggat tgtcgatatg tcatctacag gggtatctat
     1141 cgcttacctt gtaacatgcc ttgcagcagc gaaattgttt agctttaatc aaaacagtca
     1201 aacttacgga ccggtttata aagtgtttgc gattattggc tcaatttttg cctttatctt
     1261 tttactgtta ctattgttgc cattttcacc ggcgtcgtta tctatgccat cctatattgc
     1321 gttaggtggt tggacgattc tcggattggt gttcttcttt attcgtttac ctaaattacg
     1381 tcgtatggat aaagatgagt tgacacaatt gattttggat acgagaaaac gtgatgttga
     1441 aaaaatgata gaggaataag cagttttgaa atgttagaag atatgctaga acgaaaaagt
     1501 atgtttgtct taaatctagc tttttcacga ttgttcttaa taaatttacg ctcttgctgt
     1561 accttaagtt tttgatgtat gatagtattt taaaaaacag tgacgagttt ttcttttgat
     1621 aattgaattc ctcatcactg ttttatttgt ttaatagaaa aacttttatt attttattgt
     1681 tccccataaa gcaccgaatt ttcctgttaa tctatcccaa gcacttactg tcaggtaaac
     1741 gcttctccca gtattcagtg tagcttaccc aaatatggtc gtcttgcttc ataacttcat
     1801 cataagtcat tgtttgtctt gcttttaaga ctccagcttt catcatcgtt ctaattgact
     1861 atatttcaca tcagttgggc tttccagaga agagcttagg aatgatataa taccaacttc
     1921 aaattaaaga cgttcattta gtaataaact agcatcaccc accactatag atatacccta
     1981 tttttaactg tccttgggtc acaatgttac tgtttgccca actcagcgta atttggtttc
     2041 attccttttg tgatgtaaaa tgacacgcct tcgtatatat catgtctcaa tcaaacaacc
     2101 tccgatcaaa gattaagtta agacatgatt atatatttta gaaaataaaa aatgtagaaa
     2161 aaacagcatt ttcattccgc catttacacc ccatccccta acaattaatg tgataatttt
     2221 tctgaacgga aattaatcat aaacaaactg ttagatatta tatatattaa tgaaattaat
     2281 atatatattt cgcgaagaga taatagttct aatagtaaag aggctgtata tcc
//
LOCUS       DANHOL010000222         2309 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.225, whole genome shotgun sequence.
ACCESSION   DANHOL010000222 DANHOL010000000
VERSION     DANHOL010000222.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 2309)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2309)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2309
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.225"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            34..279
                     /locus_tag="PTC08_002316"
     CDS             34..279
                     /locus_tag="PTC08_002316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000567888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HDK5683771.1"
                     /translation="MIDVNELLEEAIRETENLNDGEVFLVKDLFKGYVGNRIPRKDRL
                     LLGTLFLNHVSKMNGNLKAIEKTSSNQQRYKKTIDKF"
     gene            382..1251
                     /locus_tag="PTC08_002317"
     CDS             382..1251
                     /locus_tag="PTC08_002317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002328890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase domain-containing
                     protein"
                     /protein_id="HDK5683772.1"
                     /translation="MVDNIIKSVAEKLSSLSYIEGIVLGGSRARGTHTEDSDIDIGIY
                     YNSESFDINTINQFATKLDDEHRNNLVVPPGAWGDWINGGGWLVINGYHVDLILRDIK
                     RVEQIMKDTEHGIVTANYQTGHPHGYISAMYRGELAISKILYAKNESLCELKKQAETY
                     PNALQKSLVNFFMFEAGFSLMFVKANSGTDDKYYIAGHVFRIVSCLNQVLFACNNAYC
                     INEKKAIKLLETFEHKPEKYTEKVNHIFEVLGISLFECYDMTEKLYNEVNEIVSEINN
                     FLNEESSDERKQI"
     gene            1232..1966
                     /locus_tag="PTC08_002318"
     CDS             1232..1966
                     /locus_tag="PTC08_002318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016250180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HDK5683773.1"
                     /translation="MKENKYDDNIFFQKYSQMSRSQKGLAGAGEWETLKKMLPDFKGK
                     RVLDLGCGYGWHCIYAMENGASSVVGVDISHKMLEVAKGKTHFPQIEYECCAIEDVDF
                     PEESFDVILSSLAFHYVADYENLIKKIYRMLKAGGNLVFTVEHPVFTAHGTQDWYYNE
                     KGEILHFPVDNYYYEGKRTAMFLEEKVTKYHRTLTTYLNTLLSNSFIINQIVEPQPPE
                     NMMDIPGMADEMRRPMMLIVSAKKKM"
     gene            1999..>2309
                     /locus_tag="PTC08_002319"
     CDS             1999..>2309
                     /locus_tag="PTC08_002319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032491779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside 6-adenylyltransferase"
                     /protein_id="HDK5683774.1"
                     /translation="MRSEKEMMDLVLSLAEQDERIRIVTLEGSRANINIPKDEFQDYD
                     ITYFVSDIEPFISNDDWLNQFGNIIMMQKPEDMELFPPEEKGFSYLMLFDDYNKIDLT
                     L"
BASE COUNT          814 a          306 c          496 g          693 t
ORIGIN      
        1 gggctgaccc attattaata aggagtggac aacatgattg atgtaaatga gctattggaa
       61 gaagctatta gagaaactga aaatctaaat gatggcgaag tttttcttgt taaagattta
      121 ttcaagggat atgtggggaa taggataccc agaaaggatc gacttctgct tggaacgtta
      181 tttttaaacc atgttagcaa aatgaatggt aatttaaagg ctattgaaaa gacttcatct
      241 aatcagcaga ggtataaaaa gacaattgat aagttttaac tatcttttgt gaaattaaaa
      301 aaattataaa tatgttgagt agaagcaaaa gatttggctt ggaattttta cagcagtgaa
      361 tcgataaaag gagcatgctt gatggtagat aatattatta aatcagtagc agagaaatta
      421 tcctctctgt cttatataga aggtattgtt ttaggtggtt cacgtgcaag gggcacccat
      481 acagaggatt cggatataga tatcggcatc tattacaatt cagaatcatt tgacataaat
      541 actattaatc aattcgctac aaagctggat gatgagcata gaaataacct tgttgtacct
      601 cccggagcat ggggtgattg gattaatggc ggcggatggt tagtcataaa cgggtatcat
      661 gtggatttaa ttttacgtga tattaaacgt gtggaacaaa taatgaaaga tacagagcac
      721 ggaattgtta ctgccaatta tcagactggg catccccatg gttatattag tgcaatgtat
      781 cgaggagaat tagcgattag caaaatacta tatgctaaga atgaaagctt atgcgaatta
      841 aaaaaacagg cagaaactta tcccaatgct ttgcagaaaa gtttagttaa cttttttatg
      901 tttgaagcag ggttctcttt aatgtttgta aaagcaaatt cgggaacaga cgataaatat
      961 tatattgcgg gtcatgtttt tcgtatagtt tcatgtttaa atcaagtgtt atttgcatgt
     1021 aataatgctt attgtatcaa cgaaaagaaa gctataaaac tgcttgaaac ttttgaacat
     1081 aaacctgaaa aatataccga gaaggtaaat catatttttg aagtactcgg tatctcactt
     1141 tttgaatgct acgacatgac cgagaagctt tataatgaag tgaatgaaat tgtatcggag
     1201 ataaataact ttttaaacga ggagagttca gatgaaagaa aacaaatatg atgataatat
     1261 attttttcaa aaatacagtc aaatgagtcg ctcgcagaaa ggactggctg gtgcgggaga
     1321 atgggagact ttgaaaaaga tgctacctga ttttaagggt aagcgtgtgc ttgatttagg
     1381 atgcggctat ggatggcact gtatatatgc gatggaaaac ggtgcttcct ctgtagtagg
     1441 tgttgatatt tctcataaaa tgctcgaagt agcaaaagga aaaacccatt ttccacagat
     1501 tgaatatgaa tgctgtgcca tagaagatgt ggatttccca gaggagagct ttgatgtaat
     1561 actaagttcg cttgcgtttc attatgtagc agactatgag aatttaataa aaaagatata
     1621 taggatgctg aaggctggtg gcaatttagt ttttacagtt gaacatcctg tttttactgc
     1681 tcatggaaca caagactggt attataacga aaaaggagaa atactgcatt tcccggtgga
     1741 caattattat tatgagggca aacggacagc tatgtttttg gaagaaaagg ttacaaaata
     1801 tcatagaaca ctgaccacat atctaaatac actgctttca aatagtttta taataaatca
     1861 gattgtggag ccacagccgc cagagaacat gatggatatt ccggggatgg cggatgaaat
     1921 gcgacgccca atgatgctga ttgtatcggc aaaaaagaag atgtaataat atagaaaaaa
     1981 taaacgagga gtatgtaaat gagatcagaa aaagaaatga tggatttagt actttcttta
     2041 gcagaacagg atgaacgtat tcgaattgtg acccttgagg ggtcacgcgc aaatattaat
     2101 atacctaaag atgaatttca ggattatgat attacatatt ttgtaagtga tatagaaccg
     2161 tttatatcta atgatgactg gcttaatcaa tttgggaata taataatgat gcaaaagccg
     2221 gaggatatgg aattattccc acctgaagaa aagggatttt cctatcttat gctatttgat
     2281 gattacaata aaattgatct taccttatt
//
LOCUS       DANHOL010000223         2305 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.226, whole genome shotgun sequence.
ACCESSION   DANHOL010000223 DANHOL010000000
VERSION     DANHOL010000223.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 2305)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2305)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2305
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.226"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(205..732)
                     /locus_tag="PTC08_002320"
     CDS             complement(205..732)
                     /locus_tag="PTC08_002320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683775.1"
                     /translation="MIIDKIETFILNIDQMTSRFARRKLLKLLNGMNLHATIQIEWLK
                     HQQNYLLKIHLPKQALPYLISFMSFHHYRIYQIVPFQLLDAIKPLHQRPHEEHRFEMM
                     IDGLDDPFIKDKVIDILNGFQSERIIYSFAKDILKVTTTAEVMSALVGTLATRNIDIY
                     HANTAARCFHKMRIS"
     gene            922..1842
                     /locus_tag="PTC08_002321"
     CDS             922..1842
                     /locus_tag="PTC08_002321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bile acid:sodium symporter family protein"
                     /protein_id="HDK5683776.1"
                     /translation="MLQRLGRFASKTFLLWMLLASITGFLIPDIFKGFGTFVPYLLGI
                     VMLGMGLTVTVDDFKLILKEPKAVLIGIVLQYTIMPLSAYAVVKLFQLPADIAIGVLL
                     VGCCPGGTSSNVISYLAKGNVPLSVTITTISTVLASFMTPFLMFVLAQEWMDVSFIAM
                     FISVVKVVLVPLVLGILIQRFLKPVAHVGEDILPIISVIAISVILGAVVAGSGELIIQ
                     TGLLIFLVVVIHNAIGYLLGFWFSHLFKLNYTDQKTVSIEVGMQNSGLAASLATVHFN
                     PLAAVPGAIFSVVHLVTGPILAKYWAAKSK"
     gene            2021..2299
                     /locus_tag="PTC08_002322"
     CDS             2021..2299
                     /locus_tag="PTC08_002322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683777.1"
                     /translation="MMMKVLQNYFITVSILFMMLVLSVGFLMNFQNGLTLLLSLTAIL
                     TMINFTIETWLLRTTLSERKVRFIQTLVFPLSIIIIGVVCFILLPTVS"
BASE COUNT          655 a          363 c          469 g          818 t
ORIGIN      
        1 aactctacaa gtggggatta ataccattag tccagcttgc agagttggct tacgcaagat
       61 attgaaccgc cgagtacgga accgtacgct cggtggtgtg agaggacgag tagtcaatta
      121 atggctattc tcctactcga ttgcattgaa tcaagcagtg gatgacatcg acgtcatgct
      181 actgaaagag agatgatgca tagcctatga aatacgcatt ttatggaaac agcgtgcagc
      241 tgtgttcgca tgataaatat caatattgcg cgttgctaaa gtgccaacta acgcactcat
      301 cacttctgca gttgtcgtca ccttcaaaat gtcttttgca aaactgtaaa tgatacgttc
      361 actttggaaa ccatttaaaa tatcaatcac tttatcttta ataaacgggt cgtctagacc
      421 gtcaatcatc atttcaaagc gatgttcctc gtgggggcgt tggtgtaatg gttttatagc
      481 atcaagtaat tggaaaggca caatttggta aatgcgataa tgatggaagc tcataaaact
      541 aatcaaatag ggcaaagctt gtttcggtaa atgaattttg agtaggtaat tttgctgatg
      601 tttcaaccat tctatttgaa ttgtggcatg gaggttcatc ccatttaata actttaatag
      661 ttttcgtctg gcaaagcgac ttgtcatttg atctatattt aaaataaatg tctctatttt
      721 atcgattatc attctaattc cccattttaa atattgttgc attcattgta tcacgagtca
      781 tttgtatttt cagtaagact atagatgtaa agtgaccatg atatttatgt atttaaacta
      841 aatatttttg taaaaagcat tgtacaccgc atttatttgt gataatattc tgcttattaa
      901 ttgcattggg gagtgaatgc catgttacaa cgattaggtc gatttgcatc taaaacattt
      961 ttattatgga tgttattggc gagtattacc gggtttttaa ttccggatat ttttaaagga
     1021 ttcggaacgt ttgtaccgta tttattaggt attgttatgt tagggatggg tttaactgtt
     1081 acagttgatg actttaaatt aatattgaag gaaccgaaag ctgtcttaat tgggatcgtt
     1141 ttacaatata cgattatgcc gctttctgca tatgcggttg tgaagttatt tcaattacca
     1201 gctgatattg cgattggtgt actgttagta ggatgttgtc caggaggtac gtcgagcaat
     1261 gttattagtt atttggcaaa agggaatgtg ccattatctg taacgattac aacaatttca
     1321 accgtacttg cgtcgttcat gacaccattt ttaatgtttg tattagcaca agaatggatg
     1381 gacgtttcgt ttatcgcgat gtttatttca gtcgttaaag tcgtcctcgt acctttagtg
     1441 ttaggtattt taattcaaag atttcttaaa cctgtggcac atgtggggga agacatcttg
     1501 ccaattattt cagttattgc gatttcagtg attttaggtg cggttgtagc gggcagtggt
     1561 gagctcatta ttcaaacagg attgctcatc tttttagtcg tagtgataca taatgcgatc
     1621 ggttatttgt taggcttttg gttttcgcat ttgtttaaat taaattatac agaccaaaaa
     1681 acagtttcga ttgaagtcgg catgcaaaac tctggcttag ctgcatcatt agcgacagtt
     1741 cattttaatc ctttagctgc agtaccaggt gcaatattta gtgtggttca tttagtgaca
     1801 ggaccgatat tagcgaaata ctgggcagca aaatcaaaat aattttttag aaagaatagg
     1861 cgtatcatgt cgttaaaggc gataggatag gggctattct ttttctttgc atgattcgct
     1921 attgtaggat tgctagcggt tttacttttt tattaggttg tgcgaaaata atgtttaaat
     1981 atataaaata atgaagcctt aaaaagggtg tgatgtaaaa atgatgatga aagtgctaca
     2041 aaattacttt atcacggtct ccatattgtt tatgatgctc gtgctgtcag tcggcttttt
     2101 gatgaatttt cagaatggct tgacgttatt actttcattg actgcgatat tgactatgat
     2161 caactttacc attgaaactt ggctcttacg cacaacatta tcagaacgaa aagtacgctt
     2221 tattcaaacg cttgtttttc cattatctat catcattatt ggtgttgtct gtttcatact
     2281 cctgccaact gtatcctaat catat
//
LOCUS       DANHOL010000224         2276 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.227, whole genome shotgun sequence.
ACCESSION   DANHOL010000224 DANHOL010000000
VERSION     DANHOL010000224.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 2276)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2276)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2276
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.227"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(120..305)
                     /locus_tag="PTC08_002323"
     CDS             complement(120..305)
                     /locus_tag="PTC08_002323"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683778.1"
                     /translation="MILKIRLIVLILLLPQIIKVACILHLKHLGYKYIGHDQYVKMGI
                     NRTSGMNGKDKPAYKSN"
     gene            complement(371..577)
                     /locus_tag="PTC08_002324"
     CDS             complement(371..577)
                     /locus_tag="PTC08_002324"
                     /inference="COORDINATES: protein motif:HMM:NF025063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
                     /protein_id="HDK5683779.1"
                     /translation="MLRQACIESFHSIIKKELIYHQNYKTREEAMFSIVEYLLTFYNS
                     KRVHSELGKQAKRSRILFFLGPYS"
     gene            complement(556..1278)
                     /locus_tag="PTC08_002325"
     CDS             complement(556..1278)
                     /locus_tag="PTC08_002325"
                     /inference="COORDINATES: protein motif:HMM:NF033516.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
                     /protein_id="HDK5683780.1"
                     /translation="MKKGDAHLCQRPEIIYKFIYEHRHEFRVVKMCQVLGVSRSGYYD
                     WKNRKPSVRVVKREGLKKHIYQIYIKSQKRYGSPKITQLLRRHGDTVTQRTVSRLMKA
                     LGIRSITKKKYKATTHSKHHLPVSPNLLNQQFKVSQPDSVWVADITYVYTKEGWLYLA
                     TVMDLFSGRIIGWAMAPRMTNALVISALNKAYTIQEPREGLIQHSDQGSQYASIEYQN
                     LLREKGIQNSMSRKGNCYDRHV"
     gene            complement(1236..1427)
                     /locus_tag="PTC08_002326"
     CDS             complement(1236..1427)
                     /locus_tag="PTC08_002326"
                     /inference="COORDINATES: protein motif:HMM:NF013677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDK5683781.1"
                     /translation="MPIQTLTRWLSIYRKDGENGFVGSGKRTSKKQAETDLEKRLRDL
                     EEENKILKKAMHIFAKDQK"
     gene            1853..2161
                     /locus_tag="PTC08_002327"
     CDS             1853..2161
                     /locus_tag="PTC08_002327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002503462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4870 domain-containing protein"
                     /protein_id="HDK5683782.1"
                     /translation="MNKSSNKILSSFCYFSVFFAPFIFPIVVWALSNGDTSRNAKRAL
                     LYHILPMISLGLSTVLFSIYNNNHSSVMFILAIIFIIAVPFYMLKNLYLGIKVLISEK
                     "
BASE COUNT          626 a          450 c          338 g          862 t
ORIGIN      
        1 taaaaaacac tcgctaactt ttactgataa aaaatcatga gtattcattc aaaagctgat
       61 ttaattgttg attaatgtcc gtgcattaaa cttacattaa tggcaatttg aatcacacat
      121 caattagact tgtatgctgg tttatctttc ccattcatac cacttgtacg atttatcccc
      181 atttttacat attgatcgtg accaatatac ttgtagccta aatgttttaa atgtaaaata
      241 cacgctactt ttatgatttg tggtaacagt aaaattaata caattaaacg tattttgagt
      301 atcatcacgc attcccctat tcatatttca atacaagtag ttgccattga taaaaaattc
      361 tagatctatg tcaagaatac ggacccagaa aaaagagaat tctactgcgc ttcgcttgct
      421 tgcctagctc agaatgtact cgtttagaat tataaaaagt aaggagatac tccacaatgc
      481 taaacattgc ttcttccctg gttttatagt tctgatgata tatcaattcc tttttgataa
      541 tactatgaaa tgattctata catgcctgtc gtagcagttt cctttacgac tcatactgtt
      601 ctgaatccct ttttcacgta gtaaattttg atattctatt gaggcatatt gacttccttg
      661 gtctgagtgc tggattaacc cctctctagg ttcttgaatt gtatacgctt tgtttaaagc
      721 tgatatcaca agtgcattag tcatacgagg tgccatcgcc caaccaatga ttctaccgga
      781 aaataagtcc atgactgtgg ctaaatagag ccatccttct ttcgtgtaga catacgtaat
      841 gtcagcgacc catacgctgt caggttgcga tactttaaac tgttggttca ataaattggg
      901 ggatacagga agatgatgct ttgaatgggt cgttgccttg tatttctttt ttgtgataga
      961 ccttataccg agtgccttca tcaatctact gacagttctt tgggtgacag tatcgccatg
     1021 acgtctcagt aattgtgtga ttttcgggct tccgtatcgc ttttgacttt taatatagat
     1081 ttgataaata tgcttcttca aaccttcacg cttcactacg cgcacactgg gcttacgatt
     1141 tttccaatca taataaccac ttctcgaaac acctagaact tggcacatct ttacgacacg
     1201 gaattcatgt cggtgttcat agataaactt gtatattatt tctggtcttt ggcaaagatg
     1261 tgcatcgcct tttttaatat tttattctct tcttctaaat ctcttaatcg cttttctaaa
     1321 tccgtttctg cttgcttctt tgacgtccgt ttaccgctac cgacaaaacc attttcaccg
     1381 tctttacggt atatgctcag ccatcttgtt aacgtttgaa taggaatatc tagaactcta
     1441 gaaacttctg aggcacgtct ccctgattct actcattgaa ttacttccat tttaaagcta
     1501 tgatcgtatt ttcttcttgc atcactgaca cgcctatcaa ttgatttctt ttattataca
     1561 ttaaattctt atcaatttac cgtgtccgtt tcttagtcta gcatcacttt ttcgttagca
     1621 ccgactactc tcaattctca atttcatcgt tgcaaatatc ttttcttagt ttcaaacttt
     1681 ctatctctaa tcgattagcc gtgtaaaact cgagcaattc aatcatttaa tcacatttct
     1741 ttcgccttac agttttgtaa tttcaatctt acaattttgt aagatattga tttttcatta
     1801 gcactcttca gtcattcatg atagatttgc agtatagata ggaggggttg aaatgaataa
     1861 atcatcaaat aaaattcttt cttctttttg ttattttagt gtcttttttg caccatttat
     1921 tttcccaatt gtagtttggg ctctatctaa cggagataca tcgaggaacg ctaaaagagc
     1981 tttgctttat catatattgc cgatgatttc tcttggacta tctactgtgc ttttcagcat
     2041 atataataat aatcattcaa gtgtgatgtt tatattagct attattttta ttatagctgt
     2101 gccattctat atgctgaaaa atttatattt aggaatcaag gtactcattt ccgaaaaata
     2161 aaaagtcttg atgacttttt atttttctcc tcatacttct taatcgtttc cccttattat
     2221 tcacctccac agcactattc gtttgattgt cacgtacttt cgttgcttct gtaaaa
//
LOCUS       DANHOL010000225         2251 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.228, whole genome shotgun sequence.
ACCESSION   DANHOL010000225 DANHOL010000000
VERSION     DANHOL010000225.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 2251)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2251)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2251
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.228"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(191..1138)
                     /locus_tag="PTC08_002328"
     CDS             complement(191..1138)
                     /locus_tag="PTC08_002328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HDK5683783.1"
                     /translation="MVKEKIGTWNGVPVYTDFLPIGTRRTGQRLVSGNPKFVVFHDTG
                     NRDSTAQNNVDYYRNTYNIDWAYTASAHVFVDDKECIICIPVTEKAWHVLYDTPIDNN
                     WYGDDANDIAFGLEACYFSDRNRTLKSLDNACRIMGALCNSWDINPRNEMPGHQDIQF
                     DKQDPGNILEAAGYGRHDMHIIDDLVVKYMNGDAPAPKVAKTVSKPKQGKPPKTVWTW
                     HGIFTASDDNDDAIVVRRAFGMDAEEVDSGSWIYPGEYVEFDQVIKDVKNSMWWIRFK
                     YQADGANKKDNFYMPIGKITDKDGKLLKEKALWGKLEVK"
     gene            complement(1154..1528)
                     /locus_tag="PTC08_002329"
                     /pseudo
     CDS             complement(1154..1528)
                     /locus_tag="PTC08_002329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219526.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage holin family protein"
     gene            complement(1734..1931)
                     /locus_tag="PTC08_002330"
     CDS             complement(1734..1931)
                     /locus_tag="PTC08_002330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LSM domain protein"
                     /protein_id="HDK5683784.1"
                     /translation="MKLWTYVDKNVRVILKNGKEFNGRVSGYDDEVANDNGEDCIYLD
                     VGMELLYEFRESEIKSIEVLD"
     gene            complement(1934..2212)
                     /locus_tag="PTC08_002331"
     CDS             complement(1934..2212)
                     /locus_tag="PTC08_002331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001813273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683785.1"
                     /translation="MYEDYKKKNLQKGLPIPSYTELDNNELNSFIQQKTGSGRLIASD
                     TGEWRNKEVIDFGKDIGKVNINGKFITTKWGIVHYSKTGTHVIPKKED"
BASE COUNT          676 a          510 c          313 g          752 t
ORIGIN      
        1 taggaaatta aaaaaacgca accaacatcg gggaaagaca ctggttgcta ctacacactt
       61 ttattataca ataattaaat atgcaactca aaagttcata tctatactta agttacatat
      121 tacaacataa aaaaacaggg cagtcgcaat gaccgccctt aatataatat agtatgaact
      181 ttttaactta ttacttaact tctaacttgc cccacaaggc tttttctttc aacaatttac
      241 catccttgtc agtaatttta ccaataggca tataaaaatt atccttttta ttagctccat
      301 cagcttggta tttgaagcga atccaccaca tgctattttt aacatcttta atcacttggt
      361 caaactctac gtattcgccc ggataaatcc atgaaccact gtccacttct tctgcatcca
      421 ttccaaatgc acgacgtaca acaatcgcat cgtcgttatc gtctgaagcg gtaaaaatac
      481 catgccacgt ccacactgtt ttaggtggtt taccttgctt tggtttgctt actgtttttg
      541 ccacttttgg cgctggtgca tctccattca tatatttaac cactaaatca tcaataatat
      601 gcatgtcgtg gcgcccatac cctgcagctt ccaaaatatt gcctgggtct tgtttatcaa
      661 actgaatatc ttgatgacca ggcatttcat tacgtggatt aatatcccaa gaattacaca
      721 acgcgcccat aattcgacac gcattgtcta atgatttaag agttctattc ctatcactga
      781 aataacaagc ttctaaacca aaggcaatgt cgtttgcatc atcgccgtac caattattgt
      841 caataggcgt atcatacagt acgtgccatg ctttttctgt tacaggtata cagataatac
      901 actctttatc gtccacaaac acgtgtgctg atgcagtgta agcccaatcg atattatacg
      961 tattgcgata ataatcgaca ttattctgtg cagtactatc tcgatttcca gtgtcatgga
     1021 ataccacaaa ttttggattg ccactcacta gcctttgacc agtacgacgt gtcccaatcg
     1081 gtaaaaaatc cgtatatact ggtacaccgt tccatgtacc aattttctct ttaaccattt
     1141 tgtaacctct tcctcatcgt cttttagttg tatctgacat ttcttctttc aactcatgaa
     1201 taattgattt atgttcatca ttcccaatca cagccagctt ttcagcaatt tgcttcggaa
     1261 tcaacacacc catctcagca caattttcga caatagacag tccttcattg gcaatgtaga
     1321 agaatatcgt caccatcaca atgccgctat tcgcatttaa aatttgatct atcatgttgg
     1381 ccaaaataac aatacagaaa atcaacattt tacgcgcata accaaacatg gatttgcgac
     1441 tccataattt tctattcttt atcgctttag ccaaacctgt aatgacatca agcgccatca
     1501 ggagcattaa aaattataat agtttcatct cacctgcgta aaaaaaatgt cttaaaaact
     1561 tcagtttctg taaaactaat cgtaaacata tgaatcacct ctgtggacta cacttgcatc
     1621 ttttaacgcc ataagcacgg tttgggcata aaaaaaagcc actgcaatac agtagcttaa
     1681 aattgggtat aaaaagagca ccgagatgaa tgatttacca cttcatccgg tgcttaatct
     1741 aaaacttcaa tcgatttaat ttcgctttct ctaaattcat acagtaattc cataccaaca
     1801 tctaaatata tgcaatcttc tccgttatca ttagctactt catcatcata gccggacaca
     1861 cgtccattga attccttacc attttttaat attacacgta cgtttttatc tacataagtc
     1921 catagtttca ttgctaatcc tcctttttag gaatgacgtg ggttccagtt tttgaataat
     1981 gcactatccc ccattttgta gttataaact tgccattgat gttgacttta ccaatatctt
     2041 taccgaaatc aatgacttct ttgtttctcc actcacctgt atcactggca attaaacgtc
     2101 cactaccagt cttttgttgt atgaaggaat ttaattcgtt gttgtctaat tcggtatagc
     2161 tcggtatcgg caaccctttt tgtaaattct ttttcttata atcttcatac aatttatgac
     2221 ctagctgatg cctattctgt ttgttagggt t
//
LOCUS       DANHOL010000226         2250 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.229, whole genome shotgun sequence.
ACCESSION   DANHOL010000226 DANHOL010000000
VERSION     DANHOL010000226.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 2250)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2250)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2250
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.229"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            <1..612
                     /locus_tag="PTC08_002332"
     CDS             <1..612
                     /locus_tag="PTC08_002332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015365343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="poly(glycerol-phosphate)
                     alpha-glucosyltransferase"
                     /protein_id="HDK5683786.1"
                     /translation="IHVLNYPDLSIKERFRIVYYDGEASLALLRLYQLDQNSNWLNTV
                     EMLFEKFISKNYWKYHDHWLGYCTNELVKIVPKEEYFKFGIKNVVGHLDYIYQRETTF
                     PTFLELLMATYHLIEAAKANGFEKLVEDMIDEEKFIKTIHKRADYQRTGYFYPEVAMY
                     FKNPRRTLGSFFIKHHGYRVRIDDVEHYLSGYVQYQKVFKWMM"
     gene            complement(675..848)
                     /locus_tag="PTC08_002333"
     CDS             complement(675..848)
                     /locus_tag="PTC08_002333"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683787.1"
                     /translation="MKNKELEELNKQIEEELLNDNQIHKNEPNSSNMNKPRAIFLCIV
                     LLMCFISFIKMFM"
     gene            929..>2250
                     /locus_tag="PTC08_002334"
     CDS             929..>2250
                     /locus_tag="PTC08_002334"
                     /inference="COORDINATES: protein motif:HMM:NF019850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683788.1"
                     /translation="MYTVKDIAHILKELVIKTENLNDAVISDFEFQYRLINHVNTAFI
                     SISKATWTHWLGKPPKISSGNDQLKQNYLRPSLIITDDFIADLEPSIPQILVEDAIEA
                     MQVLGIYFRSQFHNTVIAVTGSMGKSSTRMMIGESLREYQVLQNRGNANTRVPTLLNL
                     CKLIKNPDFAVFEMSINAINNKGNLSLIVNPHYTIVTGIGEAHLSTIRSTEDIAQFKS
                     RIFAGQSKNGIAIVNADTKHTDLLEKEAKKYVNRVITYSRYNRNKVKITVNKGSTTIR
                     IYMNQENIQFTIPTISDGMVSNALATVHLLQLLNVDLKSCLNHLSQFKPFQKVLEIKK
                     VITPTLTTTLLDDTHNASLPAMVNAIEAFNKQSQFYTGNKIIVLGKISDLGSESEKLH
                     LQLVGKLEQSNADYILCMDPEMRKVVNRVKYKSITWYNDSELLLHDLL"
BASE COUNT          818 a          317 c          359 g          756 t
ORIGIN      
        1 attcatgtcc taaattatcc cgatttatct atcaaagagc gttttagaat tgtgtattat
       61 gatggggaag cttcactagc attactaaga ttatatcaat tagatcaaaa ttcaaattgg
      121 ttaaatactg ttgaaatgct tttcgaaaaa tttataagta aaaattattg gaaataccac
      181 gatcattggc tcggttattg tacaaatgag cttgttaaaa tcgtaccaaa agaagaatat
      241 tttaagtttg gaattaaaaa tgttgtaggt catttagact atatttatca gagggaaacg
      301 acatttccaa catttttaga attacttatg gcgacttatc acttaataga ggctgccaaa
      361 gcaaatggtt ttgaaaagtt agtagaagat atgattgatg aagaaaaatt cataaaaaca
      421 atccacaaaa gagcagatta tcaaaggaca ggctattttt atcctgaagt tgcgatgtat
      481 tttaaaaacc cgcgccgtac attggggagt ttcttcatta aacatcatgg ttatcgcgta
      541 agaattgatg acgttgaaca ttatttatca ggttatgtgc aatatcaaaa agttttcaag
      601 tggatgatgt aggttttaat ttaccattac ttgtttgaat aataaagaca aattggatta
      661 gtaaacctat accgttacat aaacattttg ataaaagaaa taaagcacat taataaaaca
      721 atgcatagaa agatagctct aggcttattc atattagatg agtttggttc attcttatga
      781 atctgattat catttaataa ttcttcttca atttgtttat taagttcttc taattctttg
      841 ttcttcataa gttgcctcct atttaaatag aattttaagg cgtttaacgt ttcaacacaa
      901 atatttttag ttaaagaggt tattttcaat gtatacagtt aaagatattg ctcatatttt
      961 aaaagagtta gttattaaaa cagaaaattt aaacgatgcc gtcataagtg attttgaatt
     1021 tcagtatcgc cttattaacc acgtaaatac tgcttttatc agtatctcta aagcaacatg
     1081 gactcattgg ttaggaaagc cacctaagat ttcatcaggc aatgatcaac ttaaacaaaa
     1141 ttaccttagg ccaagtttga ttattactga tgattttatt gctgatttag aaccgtcaat
     1201 cccacaaata cttgtagaag atgcaattga agctatgcaa gtactaggaa tatattttcg
     1261 atctcaattt cataatactg tcatcgcagt aacaggatca atggggaaaa gttctactag
     1321 aatgatgata ggcgagtcgc ttagagaata tcaggtttta caaaatcgag gaaatgccaa
     1381 tacacgtgtt cccacattac tcaatctttg taaattaatt aaaaatcctg actttgctgt
     1441 ttttgaaatg tctatcaatg caattaataa caaaggtaat ttatcactca ttgttaatcc
     1501 tcattataca atagtgacag gaattggaga agcacattta tctacaattc gtagcactga
     1561 agatattgct caatttaagt cacgaatatt tgccggtcaa agtaaaaatg gtattgcaat
     1621 tgttaatgct gacactaaac atacagactt attggaaaag gaagcaaaaa aatatgtgaa
     1681 tcgtgtaatt acttatagtc gctataatcg taataaagta aaaattactg tcaataaagg
     1741 ttctactaca attcgtattt acatgaatca agaaaatatt caatttacaa tccctacaat
     1801 aagtgatggt atggtatcca atgcccttgc gacagttcat ttattacaat tacttaatgt
     1861 tgatttaaaa tcttgtttga atcacttgtc acaatttaaa ccttttcaaa aagtattgga
     1921 aataaagaaa gtgattacac caacattaac aacaacttta ttagatgata ctcacaatgc
     1981 ctctttacca gcaatggtta atgcgattga ggcttttaac aagcaatctc aattttatac
     2041 tggaaacaaa attatcgtat taggaaaaat cagtgattta ggtagtgaat cggagaaatt
     2101 acatttacaa ttagttggaa agttagaaca gtccaatgct gattatatac tatgtatgga
     2161 tcctgagatg aggaaagttg ttaacagagt aaaatataaa agcattactt ggtataatga
     2221 ttcggaattg ttattacatg acttattata
//
LOCUS       DANHOL010000227         2232 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.230, whole genome shotgun sequence.
ACCESSION   DANHOL010000227 DANHOL010000000
VERSION     DANHOL010000227.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 2232)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2232)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2232
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.230"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            113..421
                     /locus_tag="PTC08_002335"
     CDS             113..421
                     /locus_tag="PTC08_002335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VRR-NUC domain-containing protein"
                     /protein_id="HDK5683789.1"
                     /translation="MTEQDIQNLIRIAVSKNNMIFRANVGKVKTADGRIFDTGLPPGF
                     CDLFGFRPDGKIFFIEVKKPGGRVREVQKHFIDVVKRNGAIAGVAYSVEDALKIIEEG
                     "
     gene            424..621
                     /locus_tag="PTC08_002336"
     CDS             424..621
                     /locus_tag="PTC08_002336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683790.1"
                     /translation="MNRIFGKKGQKHTETTVDYYDELKSKSAYRRYRIERVDRSHLEK
                     YPQHVEPSDFYLYLKSKVTWS"
     gene            778..1275
                     /locus_tag="PTC08_002337"
     CDS             778..1275
                     /locus_tag="PTC08_002337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3310 domain-containing protein"
                     /protein_id="HDK5683791.1"
                     /translation="MEIKDLKIGDKVQIVRGVQRVRDEDDEKWVYEPCFENGEVIDVY
                     EKGSKAQVDFKNGTCTVINANTEWYKVPSNTKIATHSEVKRPHHYMFENGTEAIKVIN
                     MIVKRYKQSIVSAQIYNAIKYIIRAPFKNGVKDLKREQKVLDKVTNQVKDMQENWDIK
                     NKEER"
     gene            1275..1523
                     /locus_tag="PTC08_002338"
     CDS             1275..1523
                     /locus_tag="PTC08_002338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683792.1"
                     /translation="MIKIYKNENDELECHVNYAGYDFKFQCIKNGFGATFKGSNSTEY
                     REFESYIDEDGEILDNLQDVMYHIASVCNWRESFGEER"
     gene            1548..1904
                     /locus_tag="PTC08_002339"
     CDS             1548..1904
                     /locus_tag="PTC08_002339"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683793.1"
                     /translation="MNFSELHQWAKENNVKSKTFSSSKFVNVHFDENGRVNCTNVGHF
                     DNFIVWKEEEITKDTRLDLIVRFIGRINNDSLYTINHMSINEHLSRFAETLTTHFYVE
                     NEDRELILIWKDGELV"
BASE COUNT          853 a          319 c          466 g          594 t
ORIGIN      
        1 tggaagtgtc ccctaacccc caaaatgatg ttttaaccat tgatatgaca acgtttttaa
       61 gctttttaaa ctatccccct aaactgtccc ctaaatttta aggaggatac aaatgaccga
      121 acaagacatt caaaacttaa tcagaatcgc agtatcaaaa aataatatga tctttcgggc
      181 aaacgtcgga aaagtaaaaa ccgcagacgg aagaattttt gatacaggat tgccaccagg
      241 tttttgcgac ctattcggtt ttagacctga tggaaaaata ttctttattg aagtaaagaa
      301 accaggcggc agagttagag aagtacagaa gcactttatt gatgtggtta aacgtaacgg
      361 tgctattgca ggcgtcgcat acagtgtgga agatgccttg aaaattattg aggagggtta
      421 gtcatgaatc gtatttttgg aaagaaaggt caaaaacata ctgaaacgac tgtcgactat
      481 tacgacgaat taaaatcaaa aagtgcttat cgtcgttatc gtatcgagag agtcgaccga
      541 agtcatttag aaaagtaccc gcaacacgtt gagccgagcg acttttatct atatctaaaa
      601 agcaaggtga catggtcgtg aaaattagaa atatagacag acgtatcata ctaactgatg
      661 agcaagtaca acagatgcat aaaaacaacg tagaacgcag acacgtatat aacagagtaa
      721 tcaatttagg atggtcagtc gataaggctg tcagtacgcc ggtgggagga aaacgacatg
      781 gaaattaaag atttgaaaat tggtgataaa gtacagattg ttcgtggagt acaacgcgtg
      841 cgtgatgaag atgacgaaaa atgggtttat gaaccgtgtt ttgaaaatgg agaggttatc
      901 gatgtgtatg aaaaaggtag caaagcgcaa gttgatttta aaaatggtac ctgcactgtt
      961 ataaatgcaa acacagaatg gtacaaagtg cctagcaaca caaaaattgc gacacattca
     1021 gaggtaaaga gacctcatca ctatatgttt gaaaatggta ctgaagccat caaggttata
     1081 aacatgattg taaaaagata caaacaatcg attgtttcag cacaaattta taacgcgatc
     1141 aaatacatca ttagagcacc ttttaaaaat ggagttaaag atttgaaacg tgagcaaaaa
     1201 gttttggata aggtaactaa tcaagtaaag gatatgcaag aaaattggga tataaaaaac
     1261 aaggaggaac gatgatgatt aaaatctata aaaatgagaa tgacgaattg gaatgtcacg
     1321 taaattatgc aggatatgac tttaaatttc aatgtattaa aaatggtttt ggcgctactt
     1381 ttaaggggag caattcaaca gagtatcgag aattcgaaag ttatatcgat gaagatggtg
     1441 aaatattgga taatttacaa gatgtaatgt accacattgc ttctgtatgc aactggagag
     1501 aaagctttgg ggaggaacga tgatgaagat taaaagttaa aaagagaatg aatttttctg
     1561 aattgcacca gtgggcaaag gaaaataacg tgaaaagtaa aacattttct agcagtaaat
     1621 ttgttaacgt tcattttgat gaaaatggac gtgttaactg cactaacgta ggacactttg
     1681 acaattttat tgtgtggaaa gaagaagaaa ttacgaaaga tacaagactt gacctaattg
     1741 ttcgatttat tgggcgaatc aataatgata gtttgtacac aattaaccat atgagtataa
     1801 acgaacactt atcacgcttt gctgaaacac taacaactca tttctatgtt gaaaatgagg
     1861 atagagagtt aattttaatt tggaaagatg gggagctggt ctagcatgta cgattcaaaa
     1921 gaatactggc ataacgaact aattaaatgt tcaaaagaac gagacgatct aaaacgtaaa
     1981 ttagacgatg tagttgattt gttcaacgct cacttacacc acaaaaaagc gtggtcggac
     2041 aatccttatt acgacagagt gcaacagaga ttaaataaaa ttatggagga cgaatagatg
     2101 gaagcacctt ataaaattca atcagagatt aaaaaaagaa ttattaagcc cgaatataaa
     2161 tttgaatata tgaacaaatt agcgggtgaa actttaacac atgtctttca tgtaaatctt
     2221 agtgtcaatt ca
//
LOCUS       DANHOL010000228         2180 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.231, whole genome shotgun sequence.
ACCESSION   DANHOL010000228 DANHOL010000000
VERSION     DANHOL010000228.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 2180)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2180)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2180
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.231"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            <1..474
                     /locus_tag="PTC08_002340"
     CDS             <1..474
                     /locus_tag="PTC08_002340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HDK5683794.1"
                     /translation="EPENPSPEQPSEPGQPENPSPEQPSEPGQPENPSPEQPSEPGQP
                     ENPSPEQPSEPGQPENPSPEQPSEPGQPKNPSPEQPNNPSVPGVQNPEKPSLTPVTQP
                     VHSNGNKAKPSQQQKALPETGETESHQGTLFGGILAALGALLFARKKRHDKKQSH"
     gene            complement(570..2084)
                     /locus_tag="PTC08_002341"
     CDS             complement(570..2084)
                     /locus_tag="PTC08_002341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional metallophosphatase/5'-nucleotidase"
                     /protein_id="HDK5683795.1"
                     /translation="MSEHDEINIQIIATSDMHSHILNETERSNIYRAGTYINEVRQQH
                     QHVVLVDNGGNLAGSVTAFYYAIIAPYKRHPMIKLMNAMNYDASGMSENEFKYGLDFF
                     NRSVALSRFPWLSANVEYAVTHEPYFSTPYTVKDIDGLKLVVMGVSSEGLMKNENVEM
                     EPEVIVESATYAAQRWIRYIYETIEPDFLIVLYHGGLSKLSHDAKSQFENRAEEIMRQ
                     AGIIDLMITGHQHETIIENDGMTLYVQAGQNAENVIHVNAKFKKRRNSFELLEMQPKI
                     VTLTDYEEDERLLNLTYYDRKAIRNWKNEYIIAHEVDMQFDTFHELLIQPHPYIQLLH
                     QSLNHETEIPLTCVHLPLPNTKGLKGRLKNEDVYNSYPHPDKPIDLTLKGSEIKRLIE
                     ESVSHLELEKGQWTLKDTDPTHFLFWSGFTYTVDMSKPLNARVTDFELREDYCYRVVT
                     TDYIYRHYRHLLSEAVVHQTFPSTMPELLVREIQAEQERQLVPQNMHIVSGLSL"
BASE COUNT          665 a          504 c          342 g          669 t
ORIGIN      
        1 gaacctgaaa accctagtcc agagcaacct tctgaaccgg gtcaacctga aaatcctagt
       61 ccagagcaac cttctgaacc aggtcaacct gaaaatccta gtccagagca accttctgaa
      121 ccaggtcaac ctgaaaatcc tagtccagaa caaccttctg aaccgggtca acctgaaaat
      181 cctagtccag aacagccttc tgagccagga caacctaaaa atcctagtcc agaacagcca
      241 aataatccaa gtgtgccagg tgttcaaaat cctgaaaaac caagcttaac tccagtcaca
      301 caaccggttc attcaaacgg caataaagca aaaccatctc aacaacaaaa agctttacct
      361 gaaacaggtg aaactgaatc acatcaaggt acattattcg gtggtatttt agctgcttta
      421 ggcgcattac tctttgcacg taaaaaacgc cacgataaaa aacaatcaca ctaagttcaa
      481 cttatgattt aaatgtgatg cacacaaaga cccatgtcgc atttctttat gaaatgctag
      541 acatgggtct tttttaatct catattcgat tacaatgata gtccacttac gatatgcata
      601 ttttgcggta ctagttgtct ctcttgttct gcttgaattt ctcgaacgag caactctggc
      661 attgtgcttg gaaatgtttg atgtacgacc gcttcactta acagatgacg ataatggcga
      721 taaatataat ccgtcgtcac cacgcggtaa caataatctt ctcgcaattc aaaatccgta
      781 acacgcgcat ttaaaggctt cgacatatct acagtatatg taaaacctga ccagaataaa
      841 aagtgtgtcg ggtctgtatc tttcaacgtc cactgccctt tttctaattc aagatgactt
      901 acactttctt caattaaacg tttaatttca ctccctttta atgtaagatc aatcggtttg
      961 tcgggatgcg gatacgaatt atagacatct tcatttttca aacgcccttt taagcctttc
     1021 gtattcggta aaggcagatg tacacatgtt aatgggattt ccgtttcatg gttcaaactt
     1081 tgatgtaaca attgaatgta tggatggggt tggattaaca actcatgaaa cgtatcaaat
     1141 tgcatatcga cttcatgcgc gataatatat tcgtttttcc aattccgtat cgcttttcga
     1201 tcgtaatacg ttaagttcaa taaacgttca tcttcctcat aatccgtcaa tgtgacaatc
     1261 tttggctgca tctctaacaa ttcaaaagag ttacgtcgtt ttttaaattt cgcattaaca
     1321 tgaatgacat tttcagcatt ttgacctgct tgaacataca gtgtcatacc atcattttcg
     1381 ataatcgttt cgtgttgatg cccagtaatc atgagatcaa ttatcccagc ctgcctcata
     1441 atttcttccg ctcgattttc aaattgcgat ttagcatcat gactcaactt cgacaaaccc
     1501 ccatgataca acacaataag aaagtcaggt tcaatcgttt cataaatata gcgaatccaa
     1561 cgttgtgccg cataggtcgc actttcgaca atcacttccg gttccatttc tacattttca
     1621 tttttcatca gtccttctga agaaaccccc atcacgacta attttaaccc gtcaatatct
     1681 ttcactgtat aaggcgtaga aaaatacggt tcatgggtga cagcatattc tacattcgcc
     1741 gatagccatg ggaaacgtga taacgcaaca gaacgattaa aaaagtctaa accatatttg
     1801 aattcatttt cgctcatgcc actcgcatca tagttcatcg cattcattaa cttaatcatc
     1861 ggatgtcttt tgtatggtgc aataatggcg taataaaaag ctgtcacact gcctgctaaa
     1921 ttaccaccgt tgtccactaa tacgacatgc tgatgttgct gtcttacttc attaatatat
     1981 gtccctgctc gatatatatt agaacgttca gtttcattga gtatatggct atgcatatca
     2041 gaagtcgcta taatttgtat atttatttca tcatgctcac tcattgcttt caccccaaat
     2101 ctcaatattc atctcgtatt ctaccatatc tcgacatcca cccactatta ttactccttt
     2161 gcacagacat taatggatat
//
LOCUS       DANHOL010000229         2139 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.232, whole genome shotgun sequence.
ACCESSION   DANHOL010000229 DANHOL010000000
VERSION     DANHOL010000229.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 2139)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2139)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2139
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.232"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            91..1443
                     /locus_tag="PTC08_002342"
     CDS             91..1443
                     /locus_tag="PTC08_002342"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HDK5683796.1"
                     /translation="MKVSKFGGSSVASAEQIKKVLNIVNSDSERRIIIVSAPGKRYSD
                     DVKTTDLLIRLYEKVINQLDYTHKKQEILNRFKDIIDELPLETDILTEIDRTLESHIA
                     TLKDTPERLLDALKSSGENFNAQIIAAYNNEQGVPTIYLSPQDAGIIVTDDPGNAQIL
                     ESSYDKIKEIRNTDKKIIIPGFFGYSETEHIVTFPRGGSDITGAIVARGVKADLYENF
                     TDVSGIFRANPSVIKHPEVIHKITYREMRELSYAGFGVFHDEALQPLYRYRIPVVIKN
                     TNRPSDKGTYIVHDREINHDKVVSGISCDKGFTSINIKKYLMNRQVGFTVKVLEILAK
                     YNISFDHMPSGIDNISIIMRSNQLAGKEQKVLEEIRHYCQIDELNVEHDLAILMIVGE
                     GMSSTVGTANKITHALAQANINLKMMNQGSSEISMMFGISTKDAEAAVKACYEHCYKR
                     "
     gene            complement(1487..2074)
                     /locus_tag="PTC08_002343"
     CDS             complement(1487..2074)
                     /locus_tag="PTC08_002343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683797.1"
                     /translation="MNTSKRERMEYLVHTLIDNEPHAFKFHGEMATHLFLTDQLHFGN
                     KVEICVKRNELLKILRVIPMAFTIKVINKKGEQLPYDDVQLHQMSSLEVYDHNDLLMN
                     IIIYDVDNEHWLFRLNHNVRIPEKYIYYHSLKWKVDYIKPEIVLMYLLHEPFNDKKVP
                     FYRHLIDKMSYFQFVTLKIAVGEDLLKRVISERST"
BASE COUNT          738 a          372 c          365 g          664 t
ORIGIN      
        1 ctaaaaattt agaaaagaca gttctatttt accattagta ttggttaatt tgaataggta
       61 tctcatatta tagaaaggtt gtctaaagtt atgaaagtat caaaatttgg aggcagttca
      121 gtcgcatcag ctgaacaaat taaaaaagtt ttaaatatcg taaacagcga ttctgaaaga
      181 cgtattatta tcgtatccgc acctggtaaa cgctatagtg atgatgtcaa gacaaccgat
      241 ctactcatta ggttgtatga aaaagtgatt aaccaactcg attatacaca taaaaaacaa
      301 gagatcctta atcgcttcaa agatattatt gatgaattac cattagaaac agatattctc
      361 actgagattg atcgtacact cgaatcacac attgcaactt taaaagatac acctgaacgc
      421 ttgctcgatg cgttaaaatc atcaggtgaa aactttaatg cacaaatcat tgctgcatac
      481 aataacgaac aaggggtccc gacgatatac ttatcaccac aagatgccgg catcattgta
      541 acggatgatc caggcaacgc acaaatttta gaatcgagtt acgataaaat taaagaaatt
      601 agaaatacag acaaaaaaat tattattccg ggcttttttg gctattcaga aacggagcat
      661 atcgtgacat tcccgcgagg tggctctgat attacaggtg caattgtcgc aaggggtgtt
      721 aaagcggatt tatatgaaaa ctttacggat gtatcaggta ttttccgcgc caatccatca
      781 gttattaaac atcctgaagt cattcacaaa attacttatc gcgaaatgcg tgaattgtct
      841 tacgctggct ttggcgtatt tcatgacgag gcattacaac cgctgtatcg ctatcgtatc
      901 cctgtcgtca ttaaaaatac gaatcgccca agtgataaag ggacatatat tgtgcacgac
      961 cgtgaaatca accatgacaa agtcgtgtca ggtattagtt gtgacaaagg ctttacaagt
     1021 attaacatta aaaagtattt gatgaataga caagtcggtt ttacagttaa agttttggaa
     1081 atattggcaa agtataacat ttcatttgac catatgccat ctggaattga taatatcagt
     1141 attattatgc gctcgaatca acttgctggc aaagaacaaa aagttttaga ggaaattcgc
     1201 cattattgtc aaattgacga attgaatgtt gaacatgact tagcaatatt aatgatcgtc
     1261 ggtgaaggta tgagttctac agtcggcact gccaataaaa ttacccacgc tttagcacaa
     1321 gccaatatta acttaaaaat gatgaaccaa ggttcttccg aaatttcgat gatgttcggg
     1381 atttcaacaa aagatgctga agcagctgta aaagcgtgtt atgaacattg ttacaaacgt
     1441 taaaaattaa aagagtactt agcgtagaat gattatcaca ttcacgttaa gtacttcttt
     1501 ctgaaatgac gcgttttaat aaatcttccc cgactgctat tttcaatgtt acaaattgaa
     1561 agtaactcat tttatcaatt aaatgacgat aaaacggtac ttttttatca ttaaaaggtt
     1621 catgtagtaa atacatgagc acaatttcag gcttaatata gtcgactttc catttgagcg
     1681 aatgatagta aatatacttc tcaggaattc tgacattatg attgagtcga aatagccaat
     1741 gctcattatc tacatcataa ataatgatgt tcattaacaa atcattatga tcataaactt
     1801 ctaaagagga catttgatgg agttgcacat catcatatgg cagctgctct ccctttttat
     1861 ttatcacttt aatcgtaaaa gccattggaa tcacacgtaa aattttcaat agctcatttc
     1921 gcttgacaca aatttcaact ttgttaccaa agtgaagttg atccgttaaa aataaatgcg
     1981 ttgccatctc accatgaaat ttaaacgcat gcggctcatt atcaattaac gtatgtacta
     2041 aatattccat tcgttctctt tttgatgtat tcatgttatt tcaccccctg ggaaaacgct
     2101 tacaattgca tttaattata ctagattaat tgtgtttta
//
LOCUS       DANHOL010000230         2083 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.233, whole genome shotgun sequence.
ACCESSION   DANHOL010000230 DANHOL010000000
VERSION     DANHOL010000230.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 2083)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2083)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2083
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.233"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(334..531)
                     /locus_tag="PTC08_002344"
     CDS             complement(334..531)
                     /locus_tag="PTC08_002344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683798.1"
                     /translation="MKTFSENRLSLIIVIVAVIIGYALQYVFNLPLIAGAFIGVLLGV
                     LGGFITQLIKSKRERRNSKNS"
     gene            670..1176
                     /locus_tag="PTC08_002345"
     CDS             670..1176
                     /locus_tag="PTC08_002345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thermonuclease family protein"
                     /protein_id="HDK5683799.1"
                     /translation="MKKITTGVSILVIAIVVLIFQYINGDGPFKKSSTDVRGESYLVK
                     RVIDGDTIIIDKDGQDERVRLIGVDTPETVKPNTPVQPYGKAASNFTKKHLTNQRVRL
                     EYDREPKDKYGRTLAYVWLGDEMFNVKLAKEGLARGKFYPPNDKYRILIEQAQKEAQK
                     KQLNIWER"
     gene            complement(1240..>2083)
                     /locus_tag="PTC08_002346"
     CDS             complement(1240..>2083)
                     /locus_tag="PTC08_002346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683800.1"
                     /translation="CVLFILVLLALLRLKFYQHQLDVEAYTKMQLLNKISILKQERYQ
                     SKEKRAITTTYHLNLRNTRQLLNHLLEDFKSDEKIKDFRIITTSQIAPKNPLFPFISE
                     FDFIVITNVGMILMNIKSLKSKTFYHFDSRIPTTYEHDLNRIVGHYIAHQYHNQFQSD
                     LKTSYTFNEIISENKITYEFHEYDPYQIAERATQNIQEAVESFVQVPVSTIGVIYCVD
                     QRGERIDGDAQPYSRIYTSESETDIQYAIQALIDTSHTQLESHTMQQLVSSFENHHES
                     SKHQ"
BASE COUNT          686 a          317 c          397 g          683 t
ORIGIN      
        1 aaacgtcaat caaagaatgt attaaaggca ttgttttttg gagtattatt atttcattgg
       61 tcacatattc acgaaagaaa aataagtaag acgtcagtaa atgataaaag ggagctatga
      121 ttatgaacga aattactaaa atacgtctca gaacagtatt gaactatggc attggagtgg
      181 cagcattaat ttttgcggtg tatatattaa cgaaatagtg cactgggcag taggattcgt
      241 taaatgattg atttgaatta aaaaggggag ttgcttattt ttgcgactcc cctttttatt
      301 aatctcagtt gttagtctta tcacgtgata ttattatgag tttttggaat tacgccgttc
      361 tctcttggat ttaatgagtt gcgtaatgaa cccacctaaa acaccgagta atacgccgat
      421 aaatgcgcct gcaatgagag gtaagttgaa tacatattgc aaagcataac cgattatcac
      481 tgcaacaatc acgatgatta gagacagacg attttcacta aaagtcttca tttttttggt
      541 tcactcctaa tcgttttgat tataacattt ttcactgaaa agaacagtgt catatgtgtg
      601 taaaattgac gcttatagtt aggattacat atgatatgat ggtgttaatc acacaaaaaa
      661 ggagtcgcta tgaaaaaaat tacaacaggc gtttcaatcc tcgtcattgc cattgtcgtt
      721 ttaatctttc aatatatcaa tggagatggc ccttttaaaa agtcttcaac ggatgtgaga
      781 ggcgaatcat atctcgttaa acgcgtaatc gatggagata ccattattat cgataaagat
      841 gggcaagatg aacgtgtacg cttaattggt gtggatacac cagaaacggt taaaccgaat
      901 acgccagtgc aaccatacgg aaaagctgca tcaaatttta caaagaaaca tttaacgaat
      961 caacgtgtta gattggaata tgatcgtgaa ccaaaagata aatacggacg tacattggct
     1021 tatgtttggt taggagacga aatgtttaat gtaaaattag caaaagaagg tttagctaga
     1081 ggcaaatttt atccaccgaa tgataaatat cgtatattga ttgaacaagc ccaaaaggaa
     1141 gcacaaaaga aacagctgaa catttgggaa cgctaaaaca ttaaagacac tttgaggcta
     1201 atatacagtc tcaaagtgtc tttttattta tgaataacct tattgatgtt ttgacgattc
     1261 atgatggttt tcgaacgatg atactaattg ttgcattgta tgactttcga gttgtgtatg
     1321 agacgtatca atgagcgctt gaatcgcata ttgaatgtct gtttcacttt cactcgtata
     1381 aatgcggcta tatggctgtg cgtcaccatc aatacgttcc ccacgttggt caacacaata
     1441 tatcacaccg attgtcgata caggcacttg tacgaatgat tcaacagctt cttggatgtt
     1501 ttgtgttgct ctttcagcaa tttgatacgg atcatattca tgaaattcat aggtgatttt
     1561 gttttcagaa ataatttcat taaacgtgta cgatgttttt aagtcagact gaaattgatt
     1621 gtgatattga tgtgcaatat agtgaccgac aatgcgattc aaatcatgtt catatgttgt
     1681 aggtattcga ctatcaaaat gataaaatgt tttggatttc aatgacttga tgttcattaa
     1741 aatcatgccg acattcgtaa tcacaataaa atcaaattct gagataaatg gaaatagtgg
     1801 attttttggt gcaatttgac ttgttgtaat aatgcggaaa tccttaattt tttcatcact
     1861 tttgaaatct tctagcaagt gattcaacag ttgtcgtgta tttctcaaat taagatgata
     1921 cgtcgttgta atcgcccgtt tctccttaga ttgatatctt tcctgtttta agatggaaat
     1981 tttattgagt agttgcatct ttgtataagc ttctacatcg agttgatgtt gataaaactt
     2041 tagacgtagg agcgctaata aaactaaaat aaaaagtaca caa
//
LOCUS       DANHOL010000231         2061 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.234, whole genome shotgun sequence.
ACCESSION   DANHOL010000231 DANHOL010000000
VERSION     DANHOL010000231.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 2061)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2061)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2061
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.234"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            5..640
                     /locus_tag="PTC08_002347"
     CDS             5..640
                     /locus_tag="PTC08_002347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016424513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YigZ family protein"
                     /protein_id="HDK5683801.1"
                     /translation="MTDSVITIKDEHIIENIISKSRFIAHIKPVHDEDEAKAFIEAKK
                     KEHREATHNCSAYTIGDTMLIQKAHDDGEPTGTAGVPMLEMLKKLDVHDVAVVVTRYF
                     GGIKLGTGGLIRAYGGAVRDVIQDVGRVALRPAIPIRISMAYDLTGKFEYELQSTTFM
                     LRDTAYTDQVTYHIDVLEEEYETFIQFANQHTQGKYTLEADPVMRLPFDID"
     gene            complement(797..1855)
                     /locus_tag="PTC08_002348"
     CDS             complement(797..1855)
                     /locus_tag="PTC08_002348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl/decaprenyl-phosphate
                     alpha-N-acetylglucosaminyl 1-phosphate transferase"
                     /protein_id="HDK5683802.1"
                     /translation="MYTLTLIGVSMIVSLIITPIVIAVSKKLDIVDKPNFRKIHTKPI
                     SMLGGTAILLSFLIGVWLGHPIEREIKPLLLGAIVMYFVGLIDDLYDLKPILKLIGQI
                     AAALVVVSYGVTIDFISIPIGPTIYFGWLSIPITIFWIVAITNAINLIDGLDGLAAGV
                     SVIALVTIAFIAILQGNIFIIMICSVLIGSLFGFLAFNFHPAKIFLGDSGALCIGFII
                     GFVSLLGFKNITFISLFFPIVILAVPFIDTLFAMIRRVKKGQHIMQADKSHLHHKLLE
                     LGYTHRQTVILIYSIAFMFSVVSIILYLSQPWGVFLMIILIVITIELIVEFTGLIDDD
                     YRPLLDLIARQKRLRSKK"
BASE COUNT          720 a          393 c          364 g          584 t
ORIGIN      
        1 ctgtatgaca gattcagtaa ttacaattaa agatgaacac attatagaaa acatcattag
       61 taaatctcgt ttcattgctc atattaaacc ggtccatgat gaagatgagg caaaagcatt
      121 tattgaagcg aagaaaaaag aacatcgaga agcaacgcat aactgttcgg cttacacgat
      181 tggtgatacg atgctcattc aaaaagcaca tgatgatggc gaaccgactg gcacagcggg
      241 tgtgccaatg ttagaaatgt taaaaaagtt agatgtccat gatgtcgctg tagtggtgac
      301 acgctacttc ggtggtatta aacttggcac aggtggcctc atacgtgcat atggtggtgc
      361 tgtacgcgat gtgattcaag atgtcggtcg tgtcgcatta cgtccggcga ttcctatccg
      421 tatttcaatg gcttatgatt taactggaaa atttgaatac gaactccaat caaccacttt
      481 tatgcttcgt gataccgcat atacagatca agtgacgtac catatcgatg tccttgaaga
      541 agaatatgag acattcattc aattcgccaa tcaacataca caaggtaaat atactttaga
      601 agctgaccca gtgatgcgct taccgtttga tattgattaa tcttataacc ttgaacaata
      661 tcctctctcg cgtactttcc atgtggcatt caaggcaata tgccgtatga aaaaaagtat
      721 ggagcgctag tttcaacctt gtaaaaactt atcccccatc atgacgatga gggataagta
      781 atatatggtt caatgtttat tttttacttc ttaatcgctt ttgtctcgct atgaggtcaa
      841 gtaatggacg ataatcatca tctattaaac cagtgaattc aacaatcaat tcaatcgtaa
      901 tgacaatgag gatgatcatt aaaaagacgc cccacggttg tgagaggtat aaaataatac
      961 tcacgacact gaacataaac gcgatagaat agattaaaat caccgtctgt cgatgcgtat
     1021 aaccgagttc taataacttg tgatgtaagt gagatttatc ggcttgcata atatgttgac
     1081 cttttttaac gcggcgaatc atcgcaaaga gtgtatcaat aaatggcact gctaaaataa
     1141 cgatcgggaa aaacaaggaa ataaacgtaa tatttttaaa accaagtagt gacacgaaac
     1201 cgataataaa gccgatacat agcgcgccac tatctcccaa aaagatttta gctggatgaa
     1261 agttaaaagc aagaaatcca aaaagcgaac caatcagaac actacaaatc ataataataa
     1321 aaatattgcc ttgtaaaatc gcaataaatg caatcgtcac aagcgcaatg acagagacgc
     1381 ctgctgcaag tccatctaag ccatcaatca agttaatcgc attcgtaatg gctacaatcc
     1441 aaaaaatggt aattggaata cttaaccatc caaagtaaat cgttggccca attggaatgg
     1501 aaataaaatc gatagtcacg ccgtacgaca caacgactaa tgccgctgca atttggccta
     1561 ttaatttaag tataggtttt aagtcatata aatcatctat taatccaaca aaatacataa
     1621 caattgcacc aagtaatagc ggcttgattt ctcgttcaat cggatgtcca agccaaaccc
     1681 ctattaagaa agataataat attgccgtac ccccaagcat cgaaatgggt ttagtatgta
     1741 ttttacggaa gttgggttta tctacaatat ctagcttttt agaaacggct attactattg
     1801 gtgtaattat taaactgact atcatcgaga cgccaatgag tgttaaagta tacatcagtt
     1861 cacctacatt acacggaatt tttcttcatt cgtcgttcaa caacggcaaa aatcattcga
     1921 aacatttgct gtctcattca ttcgcaatca aacgacttca gtacattagt tgaatacaag
     1981 acaacacaca aaacacaatt atacattaat tattttttat tatgtcagtg ttgccaatat
     2041 atttatttta cattaaatta a
//
LOCUS       DANHOL010000232         2043 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.235, whole genome shotgun sequence.
ACCESSION   DANHOL010000232 DANHOL010000000
VERSION     DANHOL010000232.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 2043)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2043)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2043
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.235"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(265..1890)
                     /locus_tag="PTC08_002349"
     CDS             complement(265..1890)
                     /locus_tag="PTC08_002349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BCCT family transporter"
                     /protein_id="HDK5683803.1"
                     /translation="MHKNNKLMDWVVFIGTAIVLLMAVIPMMVFPEQSRAVVVAMNGF
                     VTSKMGAIYLVLGLAIFCFVLYIAFGKYGSVTLGRANDKPEFSDFTWASMLFCAGIGS
                     DILYWGVIEWAYYFQAPPHSAKPFSEEALNYATMYGMFHWGPIAWAIYVLPALPIAYL
                     VFVKKQPVFKISQACRPILKGQTDKALGKIVDILFIFGLIGGTATSLALGVPMISAGL
                     EKLFGFDGSSMVVKSIVLICITIVFAYSSYQGLKKGIQVLSDLNVWLSFILLGFIFVV
                     GPTIFIMETTVTGFGNMLKNFFQMATWLEPFGGIGGREETKFPQQWTIFYWSWWIVYA
                     PFIGLFIARISKGRTLKEVILGTIVYGTFGCVLFFGIFGNFAVYLQISGQFDVIQFLN
                     SHGTEATIIEVISQLPFSKIIIGLFILSAFLFLVTTFDSASYIVAAATQTRVKGEPIK
                     LNRLFWAFALCLLPFSLMLVGGEKALEILQTASIVAGVPLIVIFIIIMISFMMILGGD
                     RIALQSRADRFKRIERRSLRILRVGEDEEDDNL"
BASE COUNT          677 a          442 c          343 g          581 t
ORIGIN      
        1 tactaaaatt tcactttggc tgatgtatga tgcttcttta aaaatcatta taaaaatgca
       61 tatatgttca ccttacgaat tcattcctct ctactcattc tcacaaaaaa gttttcaatt
      121 cacgacagcc taacaattat tagaccaatc ctgaattatg aataagttcc aaataacaat
      181 gtttattgaa aatcatataa aaatggtgta gaacattaag acctcgacgt tgtggtttct
      241 gtcctacacc attattttgt atcgttataa attgtcgtct tcttcgtctt caccgacacg
      301 taaaattctt agtgagcgac gttcgatgcg cttaaagcga tcggcacggc tttgtaaggc
      361 aatgcggtct ccacctaaaa tcatcataaa ggaaatcatg atgatgataa agatgacaat
      421 cagtggtaca cctgcaacga tagaagcagt ttgtaagatt tctaatgctt tttctccacc
      481 gactaacatg agtgaaaacg gaagtaaaca aagcgcaaat gcccaaaata gacgatttag
      541 cttaataggt tcccctttaa cgcgtgtttg cgtagctgcc gcaacaatgt atgatgctga
      601 gtcaaatgtt gtgactaaga ataagaacgc cgacaagatg aacagtccga taatgatttt
      661 tgagaatggc agttgactaa tgacttcgat gattgtcgct tccgtaccgt gtgaatttaa
      721 aaattggatg acatcgaatt gacctgagat ttgtaaatat acggcgaagt taccaaaaat
      781 accgaagaat agaacacatc cgaatgtccc gtaaacaatc gtacctaaaa tgacctcttt
      841 caatgtacgc ccttttgaaa tacgcgcaat gaataaaccg ataaatggcg cgtaaactat
      901 ccaccatgac caatagaata tcgtccattg ttgtgggaac ttcgtctctt cacgtcctcc
      961 gataccaccg aatggttcga gccatgtcgc catttggaaa aagtttttca acatgttccc
     1021 aaagcctgtc actgttgttt ccataatgaa aatagtcgga ccaacgacaa agataaagcc
     1081 taataaaata aatgataacc agacattcaa gtcacttaac acttgaatcc cttttttcaa
     1141 accttggtac gaactatagg caaatacaat cgtgatacaa attaacacaa tacttttgac
     1201 gaccatactt gacccgtcaa agccgaataa cttttcaaga cctgcagaaa tcatcggtac
     1261 acctaatgcg agtgacgtcg ctgtaccgcc aatgagtccg aaaatgaata aaatatctac
     1321 aattttacct aatgctttat ctgtctgccc ttttaaaatc ggacgacaag cttggctaat
     1381 tttgaaaacc ggttgctttt tgacgaatac taaatatgcg atcggtaatg ctggcaaaac
     1441 gtaaatcgcc catgctatag gtccccaatg aaacatccca tacattgtcg catagtttaa
     1501 agcttcctca gaaaagggtt tcgcactgtg tggtggcgct tgaaaataat aagcccactc
     1561 aatgacaccc cagtacaaaa tatctgaacc gatacctgcg caaaacagca tcgaagccca
     1621 cgtaaagtca ctaaattctg gcttgtcatt ggcacgacct aaagtgaccg aaccatattt
     1681 accaaaagct atgtataata caaaacaaaa aatcgcaagt cccaatacga gatagatggc
     1741 gcccatttta gatgtaacga acccattcat cgcgacgacg actgcgcgac tttgttcagg
     1801 aaacaccatc atcggtatga cggccatcaa taatacgatt gccgtaccga tgaacacgac
     1861 ccaatccatc aatttattat ttttatgcaa ttttaagcac cccttattct ttttaactcc
     1921 ttttctgttg attcttgatg ctcaacgtct tgatacaagc aataggttat cgaaaattaa
     1981 attttaatgc aaatttcata cattcaattt aactgtccgt tttgaatata tataactttt
     2041 caa
//
LOCUS       DANHOL010000233         1993 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.236, whole genome shotgun sequence.
ACCESSION   DANHOL010000233 DANHOL010000000
VERSION     DANHOL010000233.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 1993)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1993)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1993
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.236"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            1..1338
                     /locus_tag="PTC08_002350"
     CDS             1..1338
                     /locus_tag="PTC08_002350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019834983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate permease"
                     /protein_id="HDK5683804.1"
                     /translation="MSVAIAIIVLLILIMKLQLNTFVALVITAMVTGILLGMPFDKIV
                     ATIETGMGGTLGHIALIFGLGAMLGKLLADGGGATQIADTLIAKLGKKYVQWAMVIAS
                     FIIGIALFFEVGLVLLIPLVFTIAKRMNVSQLKIGMPMVTALSVTHGFLPPHPGPVVI
                     AKELGANIGEVLLYGFIVAIPVTIIAGPVFAKIAPRLTPTAFQREGDISSLGATKSFK
                     DEELPSFGLSTFTALLPVLLMLFATLWQLISGHEGKAHNTLESMIYFIGSAGTAMLIA
                     VVFAVFSMGIRRGIPTKQVMNTLTQAIYPIGMMLLIIGAGGAFKQVLIDGGVGGAIEK
                     IFTDVNISPILLAWLVAAILRLALGSATVAAISTTGIVLPLLQTADVNLALVALAIGA
                     GSIFCSHVNDAGFWMFKEYFGLTVKETFLTWSLIETIISVSGLVFVLFISLFV"
     gene            complement(1426..1983)
                     /locus_tag="PTC08_002351"
     CDS             complement(1426..1983)
                     /locus_tag="PTC08_002351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HDK5683805.1"
                     /translation="MAHLRTYYAEAKPFEQYIQDMEQNQTELLYIYKDFDMPTDDERI
                     EKIKDSGYKYVLVITEDWCGDAMMNNPILKHIAEQANLEVRAFHRDDNTDLIDQYLTN
                     GKSRSIPIYIFMNEKFEQKAVWGPRALNVQKFVEALRKASLPDKTDPSFEEKQKEVHL
                     KIRERYLTDASFWHDVYESIMSRLV"
BASE COUNT          550 a          361 c          424 g          658 t
ORIGIN      
        1 ttgagtgtgg ctattgcaat tattgtgtta ttaattttaa ttatgaaatt gcagttaaat
       61 acatttgtcg cactggttat tacggcaatg gtgaccggta ttttgctagg gatgccattt
      121 gataaaattg tcgcaacgat cgagacaggt atgggcggta cattaggcca tatcgccttg
      181 atttttggtc tcggtgcgat gctagggaag ttgctcgcag atggtggtgg cgcgacgcaa
      241 attgcggata cgttaattgc taaactcggt aaaaaatatg tgcagtgggc gatggtgatt
      301 gcatcattta ttatcgggat tgcattattt ttcgaagtcg gtcttgtgtt attaatacca
      361 cttgtcttta cgattgcgaa acgaatgaac gtgtctcaat taaaaatagg tatgcctatg
      421 gtaaccgcat tatcagtaac acatggtttc ttaccgccac atccaggtcc agtcgttatc
      481 gctaaagaat taggcgcaaa tattggagaa gttttattat acggctttat tgttgcgata
      541 cctgtgacaa ttatagcggg gcctgttttt gcgaaaattg caccacgttt aacaccgaca
      601 gcgtttcaac gtgaaggcga tatttcatca ttaggtgcaa cgaagtcctt taaagacgaa
      661 gaattgccaa gttttggatt aagtacattc acagcattat tacctgtatt actcatgtta
      721 tttgcgacac tttggcaact gatttctggg catgaaggaa aagcgcacaa tacacttgaa
      781 agtatgattt actttatcgg tagtgcaggt acagccatgc tcatcgcggt tgtcttcgcg
      841 gttttcagta tgggtattcg tcgtggtatc ccaacgaaac aggtgatgaa tacattaaca
      901 caagccattt atccgattgg gatgatgctg ttgattatcg gtgcaggtgg cgcattcaaa
      961 caagtactca ttgatggagg cgttggtggg gcgattgaaa aaatatttac tgacgtgaat
     1021 atttcgccaa ttctattggc atggttagtc gcagccattt tacgacttgc gctcggttca
     1081 gcaacagtag cggcaatctc aacaacgggt atcgtgttac cgttgttaca aacagcagat
     1141 gtcaatttag cgctcgttgc attagcgatt ggggcaggta gtatcttctg ctctcatgta
     1201 aacgacgcag gtttctggat gttcaaagag tatttcggat taacagtgaa agaaacattt
     1261 ttaacatggt cattaattga aacgattatt tcagtgagtg gactcgtgtt tgtactgttt
     1321 atcagtctat tcgtataagc tttgtaaaaa attagaggtt ggaacgtaaa aatttttaga
     1381 tacaattcat tcaaaaattt gcatgtccca acctcgtctt attgattaaa cgagtcgaga
     1441 cataatcgat tcatacacat catgccaaaa tgatgcgtct gtcaaataac gctctcgaat
     1501 cttgagatgt acttcttttt gtttttcctc aaagctcgga tctgttttat ccggcaatga
     1561 tgcttttcgt aacgcctcaa caaatttttg gacattgagt gcacgaggac cccataccgc
     1621 tttttgttca aacttctcat tcataaaaat ataaattggg atggaacgtg acttaccatt
     1681 tgttaaatat tgatcgatta aatctgtgtt atcatcgcgg tgaaatgcgc gtacttccaa
     1741 attggcttgt tctgcaatat gtttcaaaat agggttattc atcattgcat cgccacacca
     1801 atcctctgta atgacaagga catatttgta gccgctatct ttaatttttt caattctctc
     1861 atcatcagtc ggcatatcga aatctttata aatgtataag agttctgttt gattttgttc
     1921 catatcttga atatactgtt cgaaaggttt agcttctgcg taataagttc ttaaatgtgc
     1981 cataaaatac ccc
//
LOCUS       DANHOL010000234         1992 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.237, whole genome shotgun sequence.
ACCESSION   DANHOL010000234 DANHOL010000000
VERSION     DANHOL010000234.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 1992)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1992)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1992
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.237"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            162..1805
                     /locus_tag="PTC08_002352"
     CDS             162..1805
                     /locus_tag="PTC08_002352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011303449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-sugar mutase"
                     /protein_id="HDK5683806.1"
                     /translation="MKAQWMSKLDESLVREFYEGQTEEERQAGFEDVLTFGTAGIRST
                     FGIGPGRLNKFTVRKVALGLAQYLNAKQSDATVVIHFDTRFLSEDFGDEIARVLATKG
                     VKVVLADSYKSTPELSFAVRHLQATAGVMITASHNPSNYNGIKIYGPDGGQLLPDASE
                     DLSQYINAIESPLEIEANDFEALRDAGMILPLADEVTEAYKAGVKALVEAIESQGEKV
                     VLTSLHGTSLPLGATLLTELGFEDFVIETTQSQPDGRFPTVKSANPEEEAAFEYGIRL
                     AEQEDASLIIATDPDADRFGFVERYQDGTTRYFDGNEIGLILMKLRYQELQPTGDAFY
                     IIKSIVTGALSEALAKALNIEVVNVLTGFKYISEQLQQRQTDDAQLVLAFEESHGYLA
                     KDLSRDKDAIQFIPLLVKYKQMLAQNGLTFKEVLNDIYQQIGRYDNLTLSPTYAGHAG
                     RQKIEALMAQFRGDTSDQLLGLNVVTKEDYLTQQTTNLKTGKTTAISLPKADVIRYTF
                     EEGFIALRPSGTEPKIKVYFSLNVPDFNEVVEQFKQKYL"
BASE COUNT          664 a          335 c          420 g          573 t
ORIGIN      
        1 tcatttcata cattttcatc tattttgtat tggttagtcg aattctatgt tggaagcgtg
       61 tcgttcatgt ataatgaagt tattattatg aatgagggat atcaatcacg ttggcgtccc
      121 gttaattttt atcaatgaat catatgagga tggtggatgt tttgaaagca caatggatgt
      181 caaaactaga tgaaagttta gtacgcgaat tttatgaagg ccaaaccgaa gaagaacgac
      241 aagcaggctt tgaagatgta cttacgtttg ggactgcagg aattcgaagc acttttggca
      301 ttggacctgg acgtttaaat aaatttacag tgcgtaaagt tgcgctcggt ctcgcacaat
      361 atttaaacgc gaaacaatca gatgcgacgg tggtcattca ttttgataca cgctttttat
      421 cggaagactt tggcgacgaa attgcgcgtg tattagcgac taaaggtgtt aaagtagtac
      481 tggctgacag ttataaatca acaccggagc tgtcttttgc ggtgcgtcat ttacaagcga
      541 cagcaggtgt gatgattaca gcgagccata acccaagtaa ttacaatggc attaaaattt
      601 atggtccaga tggggggcaa ttgttgccag atgcttcaga agatttaagc caatatatta
      661 atgcgattga atcaccatta gaaattgaag cgaatgattt tgaagcttta cgtgatgccg
      721 gcatgatttt accattagcg gatgaagtca ctgaagcgta taaagcgggc gttaaagcat
      781 tagtagaggc aatcgaatca caaggcgaaa aagtcgtttt aacaagtctt cacggcacaa
      841 gcctaccatt aggtgcgaca ttattaacag agctcggctt tgaagatttt gtcattgaaa
      901 caacacaatc acaaccagac ggacgattcc cgacagttaa aagtgcgaat ccagaagagg
      961 aagcggcatt tgaatatggt attcgtcttg ctgaacaaga agacgcatca ttaatcattg
     1021 cgactgatcc agatgcagat cgatttggtt ttgtagaaag atatcaagac ggtacgacac
     1081 gttattttga tgggaatgaa atcggcttaa ttttaatgaa actgcgctat caagaactcc
     1141 aaccgactgg tgatgcgttt tatatcatta aatcaattgt gacaggtgct ttaagtgaag
     1201 cattagccaa agcgttaaat attgaggtag ttaatgtgtt gaccggcttc aaatacattt
     1261 ccgaacaatt acaacaacgt caaacagatg atgcccagtt ggtactcgca tttgaagaaa
     1321 gccatggtta tttagcaaaa gacttgtcac gcgataaaga cgccattcaa tttattccat
     1381 tattagtgaa atataagcaa atgttggctc aaaatggttt gacgtttaaa gaagtgttga
     1441 acgacatata ccaacaaatt ggccgatatg ataatctcac gttatctcca acttatgcag
     1501 gtcatgcggg aagacaaaaa atcgaagcac tcatggcaca atttagaggt gatacgagtg
     1561 atcaattgct cggcttaaat gtagtaacaa aagaagatta tctcacgcaa caaacaacaa
     1621 atttaaaaac aggtaagact acagccatct cattaccgaa agctgatgtc atccgatata
     1681 catttgaaga aggttttatt gcgttaagac cttctggaac tgaaccgaaa attaaagtgt
     1741 atttctcatt aaatgtacct gattttaacg aagtagtaga acaatttaaa caaaaatatt
     1801 tataactcga gcatcgaacg tatctttgac gcaatagaat gctgttgaat gaactatttt
     1861 taattgtttt tgggaacgtt aaattattga aagagcgata cggaagtcta aagaaatgta
     1921 ttgacttcca tatcgctctt ttttaatgct tatagtgacg atcaaaacaa ttataaacca
     1981 ggcactgaaa ta
//
LOCUS       DANHOL010000235         1967 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.238, whole genome shotgun sequence.
ACCESSION   DANHOL010000235 DANHOL010000000
VERSION     DANHOL010000235.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 1967)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1967)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1967
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.238"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(212..1822)
                     /locus_tag="PTC08_002353"
     CDS             complement(212..1822)
                     /locus_tag="PTC08_002353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HDK5683807.1"
                     /translation="MLQVTDVSLRFGDRKLFEDVNIKFTPGNCYGLIGANGAGKSTFL
                     KILSGEIDSQTGHVSLGKDERLAVLKQDHFAYEDERVLDVVIKGHERLFEVMQEKDAI
                     YMKPDFSDEDGIRAAELEGEFAEMNGWNAESDAATLLSGLGIGTDLHDKTMSELENNQ
                     KVKVLLAQSLFGEPDVLLLDEPTNGLDIQAISWLEDFLINFDNTVIVVSHDRHFLNNV
                     CTHIADLDFGKIKVYVGNYDFWYQSSQLAQKMAQEQNKKKEEKIKELQDFIARFSANA
                     SKSKQATSRKKQLEKIELDDIQPSSRRYPFVKFTPEREIGNDLLFVENLSKTIDGEKV
                     LDSLSFTMNPNDKAVLMGESEIAKTTLLKILAGEMEPDEGSYKWGVTTSQSYFPKDNS
                     AYFEGVDMNLVDWLRQYAPENEQTETFLRGFLGRMLFSGEEVKKKASVLSGGEKVRCM
                     LSKMMLSSANVLLLDEPTNHLDLESITSVNEGLKSFKGSMIFTSHDFEFINTIANRVI
                     DLDVPGGLSKEISYEAYLEEKGILKSKA"
BASE COUNT          607 a          401 c          291 g          668 t
ORIGIN      
        1 taaacagaaa atgctgaaaa ttttaaaata catcaaaaat ttcagcattc ttttaggttc
       61 aattgttgac ctttttataa gtaacgtgat gtagaattaa gtttgaaaag actattatct
      121 taagtcagta tatgcaatgg gggagaccta catatgcatc cgatttactc aaaaaaacga
      181 gatgacatca tatcatcccg ttaaataatg attatgcttt agatttcaaa ataccttttt
      241 cctctaagta ggcctcgtaa gaaatttctt tcgataaacc accaggcaca tctaaatcaa
      301 tgacacgatt cgcaatagtg ttaataaact caaagtcatg cgatgtgaaa atcatagacc
      361 ctttaaatga tttcaaacct tcattgacag atgtaatact ttccaaatct aaatggtttg
      421 ttggctcatc taataacaat acgttcgcac tagaaagcat cattttactt aacatacaac
      481 gtactttctc accaccagaa agaacgcttg cttttttctt cacttcttca ccactgaata
      541 acatacgtcc taagaaacca cgtaaaaatg tctcagtttg ttcattttct ggcgcatatt
      601 gtcttaacca atcgactaag ttcatatcaa cgccttcaaa atacgctgag ttatctttag
      661 ggaagtagct ttgtgatgtt gtcacacccc atttatagct gccttcatcc ggttccatct
      721 cgcccgctaa aattttaagt agtgttgttt ttgcgatttc actttcgccc attaaaaccg
      781 ctttgtcatt tgggttcatc gtgaatgaca atgaatctaa cactttttca ccgtcaattg
      841 ttttagaaag attttcaaca aataataaat cattaccaat ctcgcgttct ggcgtaaatt
      901 ttacgaaagg ataacgacgt gaagacggtt gaatatcatc caattcaatt ttctcaagtt
      961 gttttttacg gctcgtagct tgtttagact tagaggcatt ggcagagaaa cgtgcaataa
     1021 agtcttgtaa ctctttaatt ttctcttctt ttttcttatt ttgttcttgt gccatttttt
     1081 gtgctaattg actagattga taccagaagt catagtttcc gacataaact ttgattttac
     1141 cgaagtctaa gtcagcaatg tgtgtacaaa cattatttaa aaagtgtcgg tcatgggaaa
     1201 caacgatcac tgtattatca aagttaatta agaagtcttc taaccaacta atcgcttgaa
     1261 tatccaaacc gtttgtcggc tcatccagta agagtacatc aggctcaccg aacaaacttt
     1321 gagcgagtaa cactttcact ttttggttat tttcaagctc tgacattgtt ttatcgtgca
     1381 agtctgtacc aatgcctaaa ccagataata atgttgcagc gtcagattcc gcgttccaac
     1441 cattcatttc agcaaattcg ccttccagtt ctgctgcgcg aataccatct tcgtcactga
     1501 aatcaggttt catataaata gcgtcttttt cttgcatcac ttcaaacaat cgttcatgac
     1561 ctttaataac aacgtctagc acgcgctcat cttcatacgc aaagtgatcc tgtttaagga
     1621 ctgctaaacg ttcatcttta ccgagtgaca cgtgacctgt ttgtgaatca atttcacctg
     1681 ataaaatttt taagaaagta gattttccgg caccattcgc accaattaaa ccgtaacaat
     1741 ttcctggtgt aaacttaatg ttcacatctt caaataattt acgatcacca aaacgtaaac
     1801 ttacatccgt aacttgtaac atgcattttc tcctttaatt caattattct aatggatgca
     1861 ttatatcatg agaatgcctt ataaatctaa tttctgttgt attttatacc atcatttcag
     1921 ctaaaaacat agacgttgtt caagagattt cattatttca ctgctta
//
LOCUS       DANHOL010000236         1943 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.239, whole genome shotgun sequence.
ACCESSION   DANHOL010000236 DANHOL010000000
VERSION     DANHOL010000236.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 1943)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1943)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1943
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.239"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            113..355
                     /locus_tag="PTC08_002354"
                     /pseudo
     CDS             113..355
                     /locus_tag="PTC08_002354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167071.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3427 domain-containing protein"
     gene            517..1839
                     /locus_tag="PTC08_002355"
     CDS             517..1839
                     /locus_tag="PTC08_002355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Nramp family divalent metal transporter"
                     /protein_id="HDK5683808.1"
                     /translation="MRKSLEEINGTVAYHRDAPSWKKVFFFLGPGALVAVGYMDPGNW
                     MTSMAGGAQYGYILLSVILISSLAAMLLQSMCARLGIASGMDLAQVTRAMTSKKVAVV
                     LWLVTELAIMATDIAEVIGSAIALNLLFHIPLWLGVTVTVLDVFLLLAIIKLGFRKIE
                     ALVTVLVLTVFIIFVFEVYLSDPVWGDVFSGFLPQASVVTQPGALYIALGIIGATIMP
                     HNLYLHSSIVQSRNYERQSDEEKREAIRYATIDSNVQLSLAFIVNCLLLILGAALFFG
                     SGEALGGFYDLYDALTHSEVSTVIGGAVMSTLFAVALLASGQNATITGTLSGQIIMEG
                     FVHLKMAQWLRRLVTRIIAVIPVFFCLWLYGSSTEKIENLLIFTQVFLSLALPLSVIP
                     LVIATNNPKIMGKDFTNPRWVNLIAWALAIILTILNIYLIYATFGELG"
BASE COUNT          552 a          324 c          415 g          652 t
ORIGIN      
        1 atgatatatc cattattttt gtataatgat tgaataagta gtcacaatta ttcaacctag
       61 ctcctcaatt aacttgcttt aattaaatat aagctgcaga gtttatgaat tcaacttgaa
      121 atcttcagaa gtagatgata ttgttcatca tcaagcgcgc aacattccgt tatatctatt
      181 tgtgaaaaaa gaagatgcag aaggtaaaaa cttctactat ttagggcgtg tgcatgtcat
      241 tgaaggcacc gtggaagaaa caacgatgaa atctggagaa cctgttgtca caatgcattt
      301 taacttagaa acgcctgttc gagacgatat ttaccgttat atcgtcgaac actaactctc
      361 aactcaaata ctatttttca aaagcgattg cgatatgcgt cgcttttaat tttgtctcaa
      421 ttcatatata ataacaatat taatttaggt ggtcctaatt taatggatag atatgacatt
      481 taatgataga gatagaagag gaaaaggtag agtaaaatga gaaaaagttt agaagagatt
      541 aatggaacgg tcgcatatca tcgtgatgca ccgtcatgga aaaaagtgtt tttctttctc
      601 ggaccgggtg cccttgtagc ggtgggttat atggatccgg gaaactggat gacgtcgatg
      661 gcaggtggtg cgcaatatgg ctatatcctg ttatcggtca ttttaatttc gagtttagct
      721 gcgatgttac tccaaagcat gtgtgcgcgt ttaggtatcg cgagtgggat ggatttagca
      781 caagtcacac gtgcaatgac ttctaaaaaa gtagcagtcg tgttatggct tgttacagaa
      841 cttgcgatta tggcgacgga tattgcagag gttatcggaa gtgcgattgc gttgaattta
      901 ctttttcata ttccattatg gctcggtgtg acggtgacag tattagacgt ctttttactt
      961 ttagccatta ttaaactcgg atttcgtaaa attgaggcac tcgttacggt attagtgtta
     1021 actgtattta tcattttcgt ctttgaagtt tatttgtcag atcctgtatg gggcgatgtg
     1081 ttcagtggat ttttaccaca ggcttccgtc gtgacacaac cgggtgctct atatatcgcc
     1141 ttagggatta tcggtgcgac gattatgcca cataacttat acttacattc atctatcgtc
     1201 caatcaagaa attatgaacg tcaatcagat gaagaaaaac gagaagccat tcgttatgcg
     1261 acgattgatt cgaacgtcca attgtcactc gcatttatcg ttaactgttt attattaatt
     1321 ttaggggcag cactattttt tggaagcggt gaagcacttg gtggttttta tgatttatat
     1381 gatgcactga cacattcgga agtatctact gtaattggtg gtgcggtgat gagtacattg
     1441 tttgcggtag cgttattagc ttcaggacaa aacgccacaa tcactggcac gttatcaggc
     1501 caaattatta tggaaggttt cgttcatttg aaaatggcac aatggcttcg acgccttgtg
     1561 acacgtatta ttgcggtgat tcctgtcttt ttctgtttat ggttatacgg ttcgagtact
     1621 gaaaaaatcg aaaatctact catctttacg caagtctttt taagtttagc cttaccttta
     1681 agcgtcattc cattagtcat agcgacgaat aatcctaaaa ttatgggcaa agactttacc
     1741 aatccgcgtt gggtcaatct cattgcgtgg gcattagcga ttatcttaac aattctgaat
     1801 atctatctta tttacgcgac ttttggagaa cttggttaat acggttaagt cgggggcttg
     1861 tacatgcatt gttcaggccc ttaattttgt ttaaaaaaat gtgaaatgaa tcgagtagat
     1921 tgttttaata tgtttctttt tgc
//
LOCUS       DANHOL010000237         1908 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.240, whole genome shotgun sequence.
ACCESSION   DANHOL010000237 DANHOL010000000
VERSION     DANHOL010000237.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 1908)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1908)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1908
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.240"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(764..1135)
                     /locus_tag="PTC08_002356"
                     /pseudo
     CDS             complement(764..1135)
                     /locus_tag="PTC08_002356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016912861.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylglutaryl-CoA synthase family
                     protein"
     gene            1189..1862
                     /locus_tag="PTC08_002357"
     CDS             join(1189..1390,1390..1862)
                     /locus_tag="PTC08_002357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_084012291.1"
                     /ribosomal_slippage
                     /note="programmed frameshift; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS6 family transposase"
                     /protein_id="HDK5683809.1"
                     /translation="MNYFGYKQFSKDVITVAVGYYLRYALSYRDISEILRERGVNVHH
                     STVYRWVQEYAPILYQIWNKKHKKAYYKWRIDETYIKIKGKWSYLYRAIDAEGHTLDI
                     WLRKQRDNHSAYAFIKRLIKQFGKPQKIVTDQAPSTKVAMAKVIKAFKLNPDCHCTSK
                     YLNNLIEQDHRHIKVRKTRYQSINTAKNTLKGIECIYGLYKKNRRSLQIYGFSPCHEI
                     SIMLTS"
BASE COUNT          624 a          336 c          291 g          657 t
ORIGIN      
        1 attaaaaaga gatgaatatc ataaataaag aagtcgatag attcgtattg attatggagt
       61 taatctacgt ctcatctcat ttttaaaaaa tcatttatgt cccaagctcc attttgtaat
      121 caagtctagt ttttctgtac cccttatctg caattttact taggattgct tttaacttac
      181 ctcttatctg caattttact taggattgct tttaacttac cccttatcag caattttact
      241 gagaactgct tttaacgcac ctcttatctg caattttgcc tagaactgct tttaacgtac
      301 ctcttatctg caattttact tagaactgct tttaacgtac ctcttatctg taattttact
      361 gagaactgct tttaacaaac ctcttatctg caattttact tagaactgct tttaacaaac
      421 ctcttatctg caattttact tagaactgct tttaacaaac ctcttatctg caattttact
      481 tagaattgct tttactattc ctcttattag tataatctca gtaagaatgc gtataaaaat
      541 gaaaattaca accgattttg taagtgctga cgcctgaggg aatagtatgt gcgagagact
      601 aatggctcga gccatacccc taggcaagca tgcacgtaca aaatcgtaag ataaaaaaat
      661 aagcatatca ctgtaaactt taaaaaatca gtttagtgat atgcttattt atttcgagtt
      721 aggatttatg tcccaagctc atcaagcaca atcggccact agtttatttc tctatcttat
      781 atgttctgat atggtcttct atactgtata agtatacttt tgaatatgga tcttgtgtca
      841 attcacgttc gaaatcaaat tcttgattat caaatctgtt aaagaatgtt tcgtattctt
      901 cgactgataa ttgctctcta gattctagca tatttaagtg tttctcttta tctaatgctt
      961 tgtcatatcc tttaacgatt gaaccactaa agatttctcc tactgctcct gaaccataac
     1021 taaatagaca tactttctct tctggttgga atgtgtggtt ctgtaataac gaaattaaac
     1081 ttaagtataa tgatcctgta taaatgttac caacatctct attccataat acggttctgt
     1141 tgcaaagttg aatttatagt ataattttaa taaaaaggag tcttctgtat gaactatttc
     1201 ggatataaac aattcagtaa agatgttatc actgtagccg ttggctacta tctaagatat
     1261 gcattgagtt atcgtgatat atctgaaata ttaagggaac gtggtgtaaa cgttcatcat
     1321 tcaacggtct accgttgggt tcaagaatat gccccaattt tgtatcagat ttggaataaa
     1381 aagcataaaa agcctattat aagtggcgca ttgatgagac atacatcaaa ataaaaggaa
     1441 aatggagcta tttatatcgt gccattgatg cagagggaca tacattagat atttggttgc
     1501 gtaagcaacg agataatcat tcagcatatg cgtttatcaa acgtctcatt aaacaatttg
     1561 gtaaacctca aaagatagtt acagatcagg caccttcaac gaaggtcgca atggctaaag
     1621 taattaaagc gtttaaactg aatcccgact gtcattgtac atcgaaatat ctgaataacc
     1681 tcattgagca agatcaccgt catattaaag taagaaagac aagatatcaa agtatcaata
     1741 cggcaaagaa tactctaaaa ggtattgagt gtatttacgg tctatataaa aagaaccgca
     1801 ggtctctcca gatctacgga ttttcgccat gccatgaaat tagcatcatg ctaacaagtt
     1861 aacacaaagt attattttaa aattgagatt agacatttat ttttcaac
//
LOCUS       DANHOL010000238         1902 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.241, whole genome shotgun sequence.
ACCESSION   DANHOL010000238 DANHOL010000000
VERSION     DANHOL010000238.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 1902)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1902)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1902
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.241"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            255..797
                     /locus_tag="PTC08_002358"
     CDS             255..797
                     /locus_tag="PTC08_002358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HDK5683810.1"
                     /translation="MNERDIRVQKTNLKLSEVFLTLLEDYWLTKITINQICQRANVHR
                     TTFYKHFKDKYELLYYVSRMALKPYFALALDMRLREPFSSIDKTINQQILKILHTQKG
                     DAKFYQVVTASFYDYFQKELQRYEAELPTQFPFPIEVFSYVYASTICSINQWCSDYDL
                     QLDAYYRDEIYRNLMNFHQK"
     gene            891..1565
                     /gene="tenA"
                     /locus_tag="PTC08_002359"
     CDS             891..1565
                     /gene="tenA"
                     /locus_tag="PTC08_002359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiaminase II"
                     /protein_id="HDK5683811.1"
                     /translation="MKFTERLWQRVQPIWDSYLEHPFVKGIGDGTLDKEKFKHWMKQD
                     YIYLIDYARLFAIGATKATDLEMMTTFGNLVSGTLNTEMQLHRQYAAQFGISEQELES
                     TQPASTALAYTSYMLNLAQRGGVENVIAAVLTCTWSYHYIGEALNQIEGAAEHPFYGE
                     WIKMYSSPEFTAFKEDVIEMMDRVAEGMSEEVLDALEEIVVHTSYYEYMFWDMAEYLE
                     TWPIKG"
     gene            complement(1691..>1902)
                     /locus_tag="PTC08_002360"
     CDS             complement(1691..>1902)
                     /locus_tag="PTC08_002360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683812.1"
                     /translation="PIAFLFYINRAAEEITQKLAPYIGNVDPATVFSPSNALHNAIIF
                     TAIAMVLYFISLFFRNRRPKIRKQL"
BASE COUNT          650 a          265 c          410 g          577 t
ORIGIN      
        1 tataaattaa ttggaacaat catgttattt gtttcgtaaa agttatttga ataaatttta
       61 gtttctattg agttgtgtcg aaagttgaag tacaattatt aataatttaa taaaaaacgg
      121 tgtaaaataa tattgtaaga aaaattttgt gttgttggag ggggcatctc caatgatatg
      181 agtgatgaat gtttcgaatt tacacctcat tgataagcat caccatagaa gaaaagaaag
      241 gtgcgcatga gtttatgaat gaaagagata tacgtgtaca gaaaacgaat ttgaaattat
      301 cagaagtatt tttaacctta ttagaagatt attggctcac caaaattacc attaaccaaa
      361 tatgccaaag agcgaacgtc catagaacga ctttttataa acattttaaa gacaaatacg
      421 aattactcta ttatgtgagt cgaatggcgt tgaaacctta tttcgccttg gcattagaca
      481 tgcgtttaag agaaccattc agtagtatcg ataagacgat taatcaacaa atattaaaaa
      541 ttttacatac gcaaaaaggc gatgcgaagt tttatcaagt ggtgaccgca agtttctacg
      601 attattttca aaaggaactc cagcgctatg aagcagaatt acctactcaa ttccctttcc
      661 caatagaagt gtttagttat gtttatgctt ccacaatctg ttcgattaat cagtggtgta
      721 gtgattatga tctacaatta gatgcgtact atcgtgatga aatttatcgc aatttgatga
      781 attttcacca aaaataaaac gcgtgtgtat gatgtagatg attgcatatc gtctgtacac
      841 acctttatga tgataaggaa agaaactcta atttgaaagg cgtgttcatg atgaaattta
      901 ctgaacgatt atggcaacgt gttcaaccga tatgggacag ctacctagag catccgtttg
      961 tcaaagggat aggtgacggg acgttagata aggaaaagtt taaacattgg atgaagcaag
     1021 actatattta tttgatagat tatgcgcgat tatttgcgat aggtgcaaca aaagcgacgg
     1081 atttagaaat gatgaccact tttggcaatt tagtctctgg gacattgaat acagaaatgc
     1141 aactccatcg tcaatacgcc gcgcaatttg gcattagtga acaagaatta gaatcaacgc
     1201 aaccagcgag tacggcattg gcttatacaa gttatatgtt gaatttagcc caacgtggtg
     1261 gtgtagaaaa tgtgattgcc gcagtgctca cgtgtacatg gagttatcac tatattggag
     1321 aggcgttaaa tcaaatagaa ggcgctgcag aacatccttt ttatggtgaa tggataaaaa
     1381 tgtacagttc acccgagttt acggcgttta aagaagatgt cattgagatg atggatcgtg
     1441 tcgctgaagg aatgtcggaa gaggtattgg acgcattaga agagattgtc gttcatacga
     1501 gctattatga atatatgttt tgggatatgg cagagtactt ggagacttgg ccaatcaaag
     1561 gataaatgaa gaagtgatga agattgatgt gcttttggga tggtagtatt taatcattga
     1621 aagacaatca aaaagaagtc gctatggaga atgtggttgt ctctatagtg acttctttaa
     1681 tttgagtcat ttaaagctgt ttacggattt ttggacgtct gtttctgaaa aatagactga
     1741 taaaataaag aaccatggca atagcggtaa aaataatcgc attatgaagt gcattcgatg
     1801 gtgaaaaaac agtagcagga tctacgttgc cgatgtaagg tgcaagtttt tgtgtgattt
     1861 cttcagcagc acgattaata taaaataaga aagcaattgg aa
//
LOCUS       DANHOL010000239         1876 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.242, whole genome shotgun sequence.
ACCESSION   DANHOL010000239 DANHOL010000000
VERSION     DANHOL010000239.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 1876)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1876)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1876
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.242"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            92..1582
                     /gene="cls"
                     /locus_tag="PTC08_002361"
     CDS             92..1582
                     /gene="cls"
                     /locus_tag="PTC08_002361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cardiolipin synthase"
                     /protein_id="HDK5683813.1"
                     /translation="MQLIFDPAVNTIYRIFLGVVFLMNIVLAFVIIFMERDRRDATST
                     WAWLLLLFIMPTFGFLLYLFFGRAVKLKQTRYDESKEVEDARTRVKDQKENFKNKQFS
                     TDNPVVEKQSDLVEMMLTREASFLSENNHVSIFTDGHELFNRMKQDLKDAQQYIHMEF
                     YILNMDGLGTEILQILKDKAREGLEVKLLYDAVGSKQLRKSKLKGLVDAGVEVEAFFH
                     AKIIPFINFRVNNRNHRKNVVIDGDIGYVGGFNIGDEYLGLDKKMGYWRDTHLRIQGD
                     GVDALQLSFIHDWNSQVDEDEQLKYISRYFPKNARKDGNVALQLGLSGPDREWPQLEF
                     AYLKMIMNAKSTIYMHSPYFVPDIGYVNALRIAAKAGVDIHLIVPNKPDQPFVHWATL
                     TTVAQLMKDGVNVYTYENGFIHSKMMVIDGEVASVGSANMDERSFKLNFEVNAIMYNE
                     EIAQTLIAAFKEDLKVSKKLTPERYAARSNWVKFKQSIAKLLSPIL"
BASE COUNT          589 a          306 c          414 g          567 t
ORIGIN      
        1 aaagaatatg aagataaatt caaaagtgat atattgatga atgtgattga taaaatatat
       61 gattgaaatc agtgtaaagg aggttttcgc gatgcaactc atatttgatc ctgctgtgaa
      121 tacgatttat cgcatctttt taggcgtcgt ttttcttatg aatattgtgc tcgcgttcgt
      181 cattattttt atggaaagag atcggcggga tgcgacatcg acatgggcat ggttactgtt
      241 actttttatt atgccgacat ttggcttctt gttgtatctc ttctttggtc gggcggtcaa
      301 attgaaacaa acacgttatg atgaaagtaa agaggtagaa gatgcaagga cacgtgttaa
      361 agatcaaaaa gaaaacttta aaaataaaca atttagtaca gataatcctg tagtagagaa
      421 gcaatctgat ttggttgaaa tgatgttaac acgagaagca agctttttaa gtgaaaacaa
      481 tcatgtctcc atttttacag atggccatga attatttaat cgaatgaaac aagacttgaa
      541 agatgcgcaa caatacattc atatggagtt ttatatttta aatatggatg gtttaggtac
      601 tgagatactt caaatattga aagacaaagc tcgggaaggc ctcgaagtga agttgttgta
      661 tgatgcggtc ggttctaaac aactgagaaa gtcaaaatta aaaggtttgg ttgatgcggg
      721 tgttgaagtg gaagcctttt tccatgcaaa aatcattcca tttatcaatt tccgtgtgaa
      781 caatcggaac caccgtaaaa atgttgtcat tgatggcgat attgggtatg tcggtggttt
      841 taatattgga gatgaatacc tcggtttaga caagaaaatg ggttactggc gtgatacaca
      901 tttgcgcatt caaggtgacg gggtagacgc attacaattg agttttattc atgattggaa
      961 ctcacaagta gatgaagacg aacaattgaa atacatatct cgttacttcc ctaaaaatgc
     1021 acgtaaagat ggaaacgtcg cattgcaact tggtttaagc ggaccagaca gagagtggcc
     1081 gcaacttgaa tttgcatatt tgaaaatgat tatgaatgcg aagtccacca tttacatgca
     1141 ttcaccttat tttgtgccag acattggtta tgtgaatgcc ttacgtattg ccgccaaagc
     1201 aggcgttgac attcatctga tcgtccctaa taagccagat caaccgtttg tgcactgggc
     1261 gacgttaacg acagtcgcgc aactaatgaa ggatggcgtc aatgtgtaca cgtatgaaaa
     1321 cggctttatt cactctaaaa tgatggtcat tgatggtgaa gtcgcatcgg tcggttcagc
     1381 gaatatggac gaacgaagct ttaaactgaa ctttgaagtc aatgcgatta tgtataacga
     1441 agagattgcg caaacattaa tagcagcgtt taaagaagat ttgaaagtgt cgaaaaaatt
     1501 gacaccagaa cgttatgcgg cccgctcaaa ttgggtgaaa ttcaagcagt ctatcgcaaa
     1561 actactgtcg cctattttat aaactttttc tgtatttgaa cttgatatta cgattgtcat
     1621 caaaggttcg cgttcccagg ggctgaccct tcaactaacc aacgctttgt ttatacagtt
     1681 acatgagacg aagcgttggt ggattttccg ggccatctga tccctcggga gtctcaccca
     1741 gatgccaatc atgcgttaaa tacagccaag aaacaaatag ccgaattttt atggatgtca
     1801 gaatatttta cgtcaaattt gatggatgtg tatatttctt atatgcaagg tatcgtttgg
     1861 tggttattta gataac
//
LOCUS       DANHOL010000240         1821 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.243, whole genome shotgun sequence.
ACCESSION   DANHOL010000240 DANHOL010000000
VERSION     DANHOL010000240.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 1821)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1821)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1821
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.243"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            463..1218
                     /gene="nfsA"
                     /locus_tag="PTC08_002362"
     CDS             463..1218
                     /gene="nfsA"
                     /locus_tag="PTC08_002362"
                     /EC_number="1.5.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011276836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-insensitive NADPH nitroreductase"
                     /protein_id="HDK5683814.1"
                     /translation="MSEYVYDLAKRHHSVRKFKQTPIDREIIKKLIEAGQMASTSSFL
                     QTTSFIGVESIEKKEALREVSGQPYVVENGYLLVYVIDYHRHQLVNEKSKADMAASFE
                     SAEGLLVGTVDAALAAQNIALTAEDMGYGIVYLGSLRNDVQRVREILNLPEHVFPLFG
                     MAIGEPADDENGSPKPRLPLSHVFHVDTYNQDDAELSEQIEAYDQTVSQYYQERTQGK
                     RDETWSEQIAGFMSSKQRLEMNDWLQMSGFNKK"
BASE COUNT          590 a          299 c          383 g          549 t
ORIGIN      
        1 atctcaagta gtattatgac atggaacaat cattacgtca aataaataca aaagattttt
       61 atccactttg aagtcaaacg ctttcatcat taatagcggt tttgatgtta taggtgcaat
      121 aaagcataaa tacagtaaaa aagccacttt ttgatcacaa ttcggtcaca tttggtgatt
      181 gatacgcatt attttctcat tttagtaaag ttaataaagc agacgatgta ttggaaataa
      241 aaatggaaat aagttaattg ataaaagatt tgaatatcat ttatatgctt tcattctcaa
      301 ttaaagggta aatatagaaa gcactttgtt gatgttgtca taacagatgt gattttcgct
      361 aatttaataa agtacgagta tgatagctag gaagcatgca cgaatcatgc gttttagtag
      421 ggcaagtgtt acgatagaga aaaggatgtt aggagtgttt ttatgtcaga atatgtgtat
      481 gatttggcga aacgtcacca ttcagttcga aaatttaagc aaacaccaat tgatcgagaa
      541 ataatcaaaa agttaatcga agcaggacaa atggcatcga catcgagttt tttacaaacg
      601 acatcattta ttggggtaga atctattgaa aagaaagagg cacttagaga agtctcaggt
      661 cagccttatg tcgttgaaaa tgggtacttg ctcgtttatg tgattgatta ccatcgccac
      721 cagttggtta atgaaaaatc gaaagcagac atggcagcga gctttgaatc ggctgaaggg
      781 ttattagtcg gtacagttga cgcggcatta gcggcgcaaa atattgcatt aacggctgaa
      841 gatatgggtt acggcattgt atatctcggt tcattacgta acgatgtgca acgggtacgc
      901 gaaattttaa atttacctga acacgtcttc ccattattcg gtatggccat tggagagccg
      961 gcagatgacg aaaatggttc acctaaaccg cgccttccat tatcgcatgt ctttcatgtg
     1021 gatacgtaca atcaagatga cgctgaattg tctgaacaaa ttgaagcgta tgaccaaacg
     1081 gtttctcaat attatcaaga acgtacacaa ggtaaacgtg atgaaacgtg gtctgaacaa
     1141 attgctggct ttatgagtag caagcaacga ttagaaatga atgattggtt gcaaatgtca
     1201 ggatttaata agaaataggg gtgaaagggc taatattatt ttgacagagc taagtttgct
     1261 gaacttgcct tttcattatt cgaacatgct gtttgcatat gattgccgtc ttggactcgc
     1321 gttcttaggg gctgaacctt caactaacca acgctttgat tatactgtta cacttgcaga
     1381 agagttggtg gattttccgg ttcagctgat ccctcaagag tctcgtccat acggcaatca
     1441 cgccaacatt tgaagaaagc gaacaagttt cattgaaaat gtctagctta gcaggataag
     1501 ctaaactaga catcagtttt tgatatttaa gtgtaaactg gaggggttca agttcaggac
     1561 ttgcctcaac tagccaacgc ttgattgaac tgttacatta ttgaagcgtt ggcggatttt
     1621 cggctgcgtc tgatctctcg ggagtctcac cctttttggc aatcttatcc ccccaaaaaa
     1681 gtaaaaggaa caggtttgcg caagtaaaaa aagtatcata tgaaaataat ccagcccttt
     1741 aacctttgag tggttttact taaaaaatgt acctctttaa tctaaataat tgactaggaa
     1801 gaattttttg tataaaatga g
//
LOCUS       DANHOL010000241         1814 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.244, whole genome shotgun sequence.
ACCESSION   DANHOL010000241 DANHOL010000000
VERSION     DANHOL010000241.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 1814)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1814)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1814
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.244"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(126..1718)
                     /locus_tag="PTC08_002363"
     CDS             complement(126..1718)
                     /locus_tag="PTC08_002363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BCCT family transporter"
                     /protein_id="HDK5683815.1"
                     /translation="MNKHNNLKKKNRNIVYTISFSIILILTLLAAIFPKTFGAYAQNT
                     YDALALNFGWLFLIIVFVLDIFLIFLALSRYGRFKLGRDDEEPEFSFMSWIGMLFSAG
                     LGVGIVFWGVAEPLTHYLHSPFPKSVDGQSVESARLAMGYTFFHWGISQWSIFAMSGL
                     IVAYFQFRKNRDGLISTAMEPVFGETYRRPFRNVIDILAIIATVMGIATSIGLGILQI
                     AGGLNHVFKVPNTSLTLILITLLMTLIFLGSALTGINRGVKWLSNINIMIGALLLLFI
                     FIFGDLRFIVETFTVSIGDYLTHFIQYSLRMDPYTGDNSWIQKWTVFYWAWVISWSPF
                     IGGFVARVSRGRTIREFVVGVLIIPPCISFLWISGFGGTAINWALHHQDGIEKIVDQD
                     YTVALFELLSKFPLYELTSALAIILIFTFIVTSADSTTHIVSGMATGGVENPKRKHKM
                     VWGILIGAISVALTVAGGLTSLQTASVVTGLPFSIILLLMIFSLMNALRREHTKHFKM
                     THIDDEKDFSRTIEERERDNEM"
BASE COUNT          644 a          373 c          325 g          472 t
ORIGIN      
        1 attttaatta ttgaaccctt gacaaatcgt aggaaagaga ctgagaaaac taatgtccca
       61 gtccctccct aatatttaaa ttaaaagtag atgttgaaat gatgatgcgt gaataggttc
      121 gcctatcaca tctcattatc gcgctcacgt tcttcaatgg tacgagaaaa gtccttttca
      181 tcatcaatat gcgtcatttt aaaatgcttc gtatgctcac gtctcaacgc attcatcaat
      241 gaaaaaatca tcaataataa gataatcgaa aatggtaatc cagttacgac tgatgcggtt
      301 tgtaaacttg tgaggccacc agcaacagtt aatgcaacag aaatggcacc gattaaaata
      361 ccccatacca ttttgtgttt acgcttagga ttttcaacgc cacctgtcgc catacctgat
      421 acgatatgtg tggttgagtc cgcactcgtc acgataaaag taaaaattaa aataatggct
      481 aaagcacttg tcaattcgta taacggaaac ttgcttaata attcaaatag cgctaccgta
      541 taatcttgat cgacaatttt ttcaattcca tcttgatgat gtaatgccca gttaatagca
      601 gtccctccaa aacctgaaat ccataaaaat gaaatacaag gtggaataat taagacgccg
      661 acgacaaatt cgcgaatcgt ccgtcctctt gagacacgag caacaaaacc accaataaat
      721 ggcgaccacg aaatgaccca tgcccaatag aacacagtcc atttttgaat ccatgaattg
      781 tcacccgtat aaggatccat acgtaaacta tactgtatga aatgtgtcaa atagtcccca
      841 attgaaacgg tgaatgtttc gacgataaat cgtaaatccc cgaaaataaa aataaacaac
      901 aataacaatg caccaatcat aatatttatg ttacttagcc acttcacgcc acgattgata
      961 cctgttaatg cagaaccgag gaaaatgagt gtcatgagta acgtaatcaa aattaatgtg
     1021 agcgacgtgt tcggaacttt aaagacatgg tttaaaccac cagcaatttg taaaatacca
     1081 agaccgatag aagtcgcaat ccccataact gttgcaatga tggccaaaat atcaatgacg
     1141 ttacgaaatg ggcgtcgata cgtttcgcca aaaacgggtt ccattgcagt agaaatcaga
     1201 ccatcccgat ttttccggaa ttggaaatag gcgacgatta aaccgctcat tgcgaaaatc
     1261 gaccattgcg aaattcccca atgaaaaaaa gtataaccca tcgcaaggcg cgcagattct
     1321 accgattgac cgtcgaccga ttttggaaac ggtgaatgca agtaatgggt taacggttca
     1381 gccacgcccc aaaagacaat gccgacacct aagccagccg aaaaaagcat accgatccac
     1441 gacataaatg aaaattctgg ctcttcatca tcgcggccta atttgaatcg gccatatctc
     1501 gaaagtgcta agaaaatcaa gaaaatgtcg agtacaaaaa cgataattaa aaagagccag
     1561 ccaaagttta aagctaacgc atcatatgta ttttgggcat atgcgccaaa tgttttagga
     1621 aagatggctg ctaataaagt gagaattaaa atgatactga acgaaatggt gtaaacaata
     1681 ttgcgattct ttttctttaa attgttgtgc ttgttcatgt gaaccccttt cttaatgcca
     1741 cgaaattgag agataatagt agttgaagat aacaataagg tcgctaatga taaaagttct
     1801 aaattatctc tata
//
LOCUS       DANHOL010000242         1716 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.246, whole genome shotgun sequence.
ACCESSION   DANHOL010000242 DANHOL010000000
VERSION     DANHOL010000242.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 1716)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1716)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1716
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.246"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            141..1535
                     /locus_tag="PTC08_002364"
     CDS             141..1535
                     /locus_tag="PTC08_002364"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase"
                     /protein_id="HDK5683816.1"
                     /translation="MEKKNMDTIVQLAKHRGFVFPGSEIYGGLANTWDYGPLGVELKN
                     NVKKAWWKKFITQSPYNVGLDAAILMNPKTWEASGHLGNFNDPMIDNKDSKIRYRADK
                     LIEDYMANVKGDENFIADGLSFDEMKRIIDEEGITCPVSGTANWTDIRQFNLMFKTFQ
                     GVTEDSTNEIFLRPETAQGIFVNYKNVQRSMRKKLPFGIGQIGKSFRNEITPGNFIFR
                     TREFEQMELEFFCKPGTEIEWQNYWKDFAANWLESLGLAKENTRLRDHDEDELSHYSN
                     ATTDIEYRFPFGWGELWGIASRTDFDLKKHSEHSGEDFSYHDPETNEKYIPYCIEPSL
                     GADRVTLAFLCDAYDEEGVEGSKDARTVLHFHPAIAPYKAAVLPLSKKLSADAIKVYE
                     QLSEDFVVDFDESQSIGKRYRRQDEIGTPYCITFDFDSLEDQQVTVRDRDTMEQVRMP
                     ISELNAFLAEKVKF"
BASE COUNT          570 a          283 c          349 g          514 t
ORIGIN      
        1 tttggcgtaa cgattcaatt taaataaaag tgagtggcta cactaatttg ggtggaaccg
       61 cggattattc taataattcg tcccaaggca aagttaattc tttggcttgg gattttttta
      121 atttttaagg agtgtaaaat atggaaaaga aaaacatgga tacgattgta caactggcta
      181 agcatagagg gtttgttttc ccaggtagtg aaatttatgg tggcttagca aacacttggg
      241 attacggtcc tctaggtgtt gagcttaaaa acaacgttaa aaaagcatgg tggaaaaagt
      301 ttattacaca gtccccttat aacgttggtt tagatgctgc tattttaatg aaccctaaaa
      361 cttgggaagc ttcaggtcac ttaggtaact ttaacgatcc aatgattgat aataaagaca
      421 gtaaaattcg ttatcgcgcg gacaagttaa ttgaagatta tatggctaac gtgaaaggtg
      481 acgaaaactt tatagcggac ggtttaagtt ttgatgaaat gaaacgtatt attgatgaag
      541 aaggcattac gtgtcctgtt agtggtactg caaactggac agacatccgt caattcaact
      601 taatgttcaa aacattccaa ggtgtaactg aagattctac aaacgaaatt ttcttacgtc
      661 cagaaactgc acaaggtatt ttcgttaact ataaaaatgt tcaacgttca atgcgtaaaa
      721 aattgccatt tggtattggt caaatcggta aatcattccg taatgagatc acaccaggta
      781 acttcatttt ccgtacacgt gaattcgaac aaatggaact tgaattcttc tgtaaaccag
      841 gaactgaaat tgaatggcaa aactattgga aagattttgc ggcaaattgg cttgaaagtt
      901 tagggttggc taaagaaaat acgcgtttac gtgaccacga tgaagatgaa ttatcacatt
      961 actcaaacgc gacaactgat atcgaatacc gcttcccatt tggttggggc gaactatggg
     1021 gtatcgcgag tcgtacagat tttgacttaa aaaaacatag cgaacattct ggtgaagact
     1081 tcagctatca cgatcctgaa acaaatgaaa aatatattcc ttattgtatc gagccttcat
     1141 taggtgcaga ccgtgtgaca ttagcatttt tatgtgatgc ctatgatgaa gaaggggttg
     1201 aaggaagcaa agatgcacgt actgttcttc acttccaccc tgctatcgcg ccgtataaag
     1261 ctgctgtatt accgctaagt aaaaaattgt ctgcagatgc gattaaagtt tacgaacaat
     1321 tgagtgaaga ctttgtagta gactttgacg aatctcaatc tattggtaaa cgttaccgtc
     1381 gtcaagacga aatcggaacg ccatactgta ttacatttga ctttgattca ttagaagatc
     1441 aacaagtgac tgtacgtgac cgtgacacaa tggaacaagt ccgtatgcca attagcgaac
     1501 ttaatgcatt cttagctgaa aaagttaaat tctaattaat atcgaataaa aaacctcgtc
     1561 caatgatgcg aactatcggg cgaggttttt gatatgaatg acaaatttga gaaataacgg
     1621 tttaatcttt aatttgggta gaccattaag ttttcctacc ctctatctac tatgtttata
     1681 tctatagtta aaaatcaatt gaaaactgaa gatgat
//
LOCUS       DANHOL010000243         1712 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.247, whole genome shotgun sequence.
ACCESSION   DANHOL010000243 DANHOL010000000
VERSION     DANHOL010000243.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 1712)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1712)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1712
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.247"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(<1..143)
                     /locus_tag="PTC08_002365"
     CDS             complement(<1..143)
                     /locus_tag="PTC08_002365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683817.1"
                     /translation="MVEKTLSELEKAMLKEEHIDVSTDLTLSIKLDILNQDYKIEPPQ
                     PFTT"
     gene            complement(334..576)
                     /gene="rpsR"
                     /locus_tag="PTC08_002366"
     CDS             complement(334..576)
                     /gene="rpsR"
                     /locus_tag="PTC08_002366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="HDK5683818.1"
                     /translation="MAGGPRRGGRRRKKVCYFTANGITHIDYKDTELLKRFISERGKI
                     LPRRVTGTSAKYQRMLTTAIKRARHMALLPFVKDEA"
     gene            complement(630..1136)
                     /gene="ssb"
                     /locus_tag="PTC08_002367"
     CDS             complement(630..1136)
                     /gene="ssb"
                     /locus_tag="PTC08_002367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HDK5683819.1"
                     /translation="MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGER
                     EADFINCVVFRKQAENVNNFLFKGSLAGVDGRLQSRSYENQEGRRVFVTEVVCDSVQF
                     LEPKSQNQRHANQNQGNQFDSYGQGFGGQQQGQNSSYQNNHQQPANDNPFANANGPID
                     ISDDDLPF"
     gene            complement(1159..1455)
                     /locus_tag="PTC08_002368"
     CDS             complement(1159..1455)
                     /locus_tag="PTC08_002368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001831345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="HDK5683820.1"
                     /translation="MRTYEVMYIVRPNIEEDARKAVVERFNGILASEGSEVLETKDWG
                     KRRLAYEIEDFKDGYYNIVRIQSENNKATDEFQRLAKINDDIIRYIVVREDENK"
BASE COUNT          469 a          346 c          291 g          606 t
ORIGIN      
        1 gtggtaaaag gttggggagg ttctatctta taatcttgat tcaaaatatc gagctttata
       61 gatagcgtta agtccgttga aacatcaata tgttcttctt tcaacatagc cttttctaat
      121 tcactcaaag ttttttcaac catcttaacc cctccatttt agacaaaaaa aggccaactc
      181 tgtttcgcat tgttaagagg cgttagttgg cttctaatac tcataaaata ccactcttaa
      241 ttttaaaatt caatgctttt tattgattcc aaatactttc aatttaaaaa ccccatacac
      301 ctcaatagat gtacggggtt tttatatatt ggcttacgct tcgtctttaa cgaatggtaa
      361 taatgccata tgacgtgcac gtttgatcgc tgtagtcaac atacgttgat atttagctga
      421 agtccctgtg acacgacgtg gtaaaatttt accgcgttct gagataaaac gttttaataa
      481 ttcagtgtct ttgtagtcga tatgtgtaat accgtttgct gtgaaataac aaactttttt
      541 acgacgacga ccgcctcttc ttggtccacc tgccatgttt tgtgcctccc ttactttaaa
      601 aatggttttc tatacgtttc agattgtcat tagaatggta aatcatcatc gctaatatcg
      661 ataggaccgt tcgcattcgc aaatgggtta tcgttagctg gttgctgatg attgttttga
      721 taagacgaat tttggccttg ttgttgtcca ccgaatcctt gaccgtagct gtcgaattga
      781 ttgccttggt tttgattcgc gtgacgttgg ttttgtgatt ttggctcaag gaattgaaca
      841 ctatcacata ccacttcagt gacgaataca cgtcggcctt cttggttttc gtaactgcgt
      901 gattgtaagc gaccgtcaac gccagcgaga cttcctttaa acaaaaagtt gtttacattt
      961 tctgcttgtt tacggaaaac aacacagtta atgaagtctg cttcacgttc cccttgcgca
     1021 ttcgtaaatg tacgattaac cgctaaggta aatgtcgcta cacttacgcc tgagggtgtc
     1081 gttctgtatt ctggatcttt agttaagcga cctactaata cgactctatt aagcatttac
     1141 acgcccccaa ttattctatt acttgttttc gtcttcacgg acaacgatgt aacgaatgat
     1201 atcgtcattg attttagcta aacgttggaa ttcgtcagta gctttgttgt tttcagactg
     1261 gatacgtacg atgttgtagt aaccgtcttt gaagtcttca atttcataag ctaagcgacg
     1321 tttaccccag tccttcgttt ctaatacctc agaaccttca gaagctaaaa ttccgttaaa
     1381 acgttcaact actgctttgc gtgcatcttc ttcaatattt ggacgcacga tgtacattac
     1441 ttcatatgtt ctcattgtat attggcacct ccttatggtc tatgcggctt atcaaaattc
     1501 aaatgataag caaggaataa ttttcattac tcacattcaa agattgtatc atagcccttt
     1561 acaaattaca acatgtttca cagattgatc aatacaattt aatttattgt catctttact
     1621 atgtcatctg tacatacaaa aactcagcat attctcagtc cttcactaac tgttcaatat
     1681 taatggcttt ttatctttaa ttaagaaata gt
//
LOCUS       DANHOL010000244         1707 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.248, whole genome shotgun sequence.
ACCESSION   DANHOL010000244 DANHOL010000000
VERSION     DANHOL010000244.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 1707)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1707)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1707
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.248"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            <1..1690
                     /gene="mec"
                     /locus_tag="PTC08_002369"
     CDS             <1..1690
                     /gene="mec"
                     /locus_tag="PTC08_002369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001801873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PBP2a family beta-lactam-resistant peptidoglycan
                     transpeptidase"
                     /protein_id="HDK5683821.1"
                     /translation="NIDRNVQFNFVKEDGMWKLDWDHSVIIPGMQKDQSIHIENLKSE
                     RGKILDRNNVELANTGTAYEIGIVPKNVSKKDYKAIAKELSISEDYIKQQMDQNWVQD
                     DTFVPLKTVKKMDEYLSDFAKKFHLTTNETESRNYPLGKATSHLLGYVGPINSEELKQ
                     KEYKGYKDDAVIGKKGLEKLYDKKLQHEDGYRVTIVDDNSNTIAHTLIEKKKKDGKDI
                     QLTIDAKVQKSIYNNMKNDYGSGTAIHPQTGELLALVSTPSYDVYPFMYGMSNEEYNK
                     LTEDKKEPLLNKFQITTSPGSTQKILTAMIGLNNKTLDDKTSYKIDGKGWQKDKSWGG
                     YNVTRYEVVNGNIDLKQAIESSDNIFFARVALELGSKKFEKGMKKLGVGEDIPSDYPF
                     YNAQISNKNLDNEILLADSGYGQGEILINPVQILSIYSALENNGNINAPHLLKDTKNK
                     VWKKNIISKENINLLTDGMQQVVNKTHKEDIYRSYANLIGKSGTAELKMKQGETGRQI
                     GWFISYDKDNPNMMMAINVKDVQDKGMASYNAKISGKVYDELYENGNKKYDIDE"
BASE COUNT          718 a          247 c          297 g          445 t
ORIGIN      
        1 taacattgat cgcaacgttc aatttaattt tgttaaagaa gatggtatgt ggaagttaga
       61 ttgggatcat agcgtcatta ttccaggaat gcagaaagac caaagcatac atattgaaaa
      121 tttaaaatca gaacgtggta aaattttaga ccgaaacaat gtggaattgg ccaatacagg
      181 aacagcatat gagataggca tcgttccaaa gaatgtatct aaaaaagatt ataaagcaat
      241 cgctaaagaa ctaagtattt ctgaagacta tatcaaacaa caaatggatc aaaattgggt
      301 acaagatgat accttcgttc cacttaaaac cgttaaaaaa atggatgaat atttaagtga
      361 tttcgcaaaa aaatttcatc ttacaactaa tgaaacagaa agtcgtaact atcctctagg
      421 aaaagcgact tcacatctat taggttatgt tggtcccatt aactctgaag aattaaaaca
      481 aaaagaatat aaaggctata aagatgatgc ggttattggt aaaaagggac tcgaaaaact
      541 ttacgataaa aagctccaac atgaagatgg ctatcgtgtc acaatcgttg acgataatag
      601 caatacaatc gcacatacat taatagagaa aaagaaaaaa gatggcaaag atattcaact
      661 aactattgat gctaaagttc aaaagagtat ttataacaac atgaaaaatg attatggctc
      721 aggtactgct atccaccctc aaacaggtga attattagca cttgtaagca caccttcata
      781 tgacgtctat ccatttatgt atggcatgag taacgaagaa tataataaat taaccgaaga
      841 taaaaaagaa cctctgctca acaagttcca gattacaact tcaccaggtt caactcaaaa
      901 aatattaaca gcaatgattg ggttaaataa caaaacatta gacgataaaa caagttataa
      961 aatcgatggt aaaggttggc aaaaagataa atcttggggt ggttacaacg ttacaagata
     1021 tgaagtggta aatggtaata tcgacttaaa acaagcaata gaatcatcag ataacatttt
     1081 ctttgctaga gtagcactcg aattaggcag taagaaattt gaaaaaggca tgaaaaaact
     1141 aggtgttggt gaagatatac caagtgatta tccattttat aatgctcaaa tttcaaacaa
     1201 aaatttagat aatgaaatat tattagctga ttcaggttac ggacaaggtg aaatactgat
     1261 taacccagta cagatccttt caatctatag cgcattagaa aataatggca atattaacgc
     1321 acctcactta ttaaaagaca cgaaaaacaa agtttggaag aaaaatatta tttccaaaga
     1381 aaatatcaat ctattaactg atggtatgca acaagtcgta aataaaacac ataaagaaga
     1441 tatttataga tcttatgcaa acttaattgg caaatccggt actgcagaac tcaaaatgaa
     1501 acaaggagaa actggcagac aaattgggtg gtttatatca tatgataaag ataatccaaa
     1561 catgatgatg gctattaatg ttaaagatgt acaagataaa ggaatggcta gctacaatgc
     1621 caaaatctca ggtaaagtgt atgatgagct atatgagaac ggtaataaaa aatacgatat
     1681 agatgaataa caaaacagtg aagcaat
//
LOCUS       DANHOL010000245         1701 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.249, whole genome shotgun sequence.
ACCESSION   DANHOL010000245 DANHOL010000000
VERSION     DANHOL010000245.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 1701)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1701)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1701
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.249"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(125..346)
                     /locus_tag="PTC08_002370"
     CDS             complement(125..346)
                     /locus_tag="PTC08_002370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001832432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683822.1"
                     /translation="MNHNTTQSDWRTVTSCLVSQNYISIVKGLLHHFTNIDDEEILDK
                     TYDDFMNDESITTVLNNDFQDIINRYLSK"
     gene            complement(361..864)
                     /locus_tag="PTC08_002371"
     CDS             complement(361..864)
                     /locus_tag="PTC08_002371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000447786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1643 domain-containing protein"
                     /protein_id="HDK5683823.1"
                     /translation="MKTIKNILETEAIFSDDQQHRYLLKKTWDSEKQTITIITMYPNY
                     TGLLRIDLTTQLIMNKVSEMDAFGSINFVNLYSNIKTPINLKHLENAYDKHTDIQIMK
                     AVKESDEVILAWGAYAKKPVVETRVNEVLEMLKPHKKKVKKLINLATNEIMHPLNPKA
                     RQKWTLK"
     gene            complement(880..1191)
                     /locus_tag="PTC08_002372"
     CDS             complement(880..1191)
                     /locus_tag="PTC08_002372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000833212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683824.1"
                     /translation="MNRYITRGIANHLPTTLQHQLWQLVAKRESEQFKELEEMDYFHV
                     FQFNMYKNQLYVKHKQERPEYIKIHKANYSKAININKVYIIREDDVYLSYYVMLLPEE
                     Y"
     gene            complement(1287..1625)
                     /locus_tag="PTC08_002373"
     CDS             complement(1287..1625)
                     /locus_tag="PTC08_002373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000171559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683825.1"
                     /translation="MTLEQQLKHYITNLFNLPKDEKWECESIEEVADDILPEQHVRLG
                     PLSNKILQTNTYYSYTLHKSNIYPFILYYQKQLIAIGYIDENHDMDFLYLHNTIMPLL
                     DQRYLLTGGQ"
BASE COUNT          472 a          240 c          312 g          677 t
ORIGIN      
        1 gatgatggaa aagcaacaaa aagagttgtt gaaaaggtta ttaagtaata tttaaaaaaa
       61 taattaatag agcatccctc accgcaaaag tgaaggatgc tctggtttta ctattatata
      121 cattttattt tgataagtag cgattgataa tatcttgaaa atcattatta agtaccgttg
      181 ttatagattc atcattcata aaatcgtcat aggttttatc aagtatttcc tcatcatcga
      241 tgtttgtgaa atgatgtagt agacctttta ctatcgaaat ataattctgt gagactaaac
      301 aactagtaac cgttcgccaa tctgattgtg tagtgttatg gttcatagat aatcctcctt
      361 ttatttcaat gtccattttt gacgagcttt aggattgagt gggtgcatga tttcatttgt
      421 tgctagatta atgagctttt tgactttctt tttatgtggt ttcaacattt ctaagacttc
      481 attaactctc gtttcaacaa ctggcttctt cgcataggcg ccccaagcta atatcacttc
      541 atctgattct ttgactgctt tcataatttg aatatctgta tgcttatcat aggcattttc
      601 taaatgtttg agattgatag gtgtcttaat attagaatat agattcacaa aattgattga
      661 gccaaatgca tccatttctg aaactttgtt cattatcaat tgggtagtta aatctatacg
      721 aagaaggccc gtataatttg gatacattgt gatgattgtg atcgtttgtt tttcgctatc
      781 ccatgttttc ttaagtagat agcgatgttg ttggtcatca ctgaatatag cttcagtttc
      841 taatatgttt ttgattgttt tcatgtagta ttcactcctc tagtattctt ccggtagtaa
      901 catgacgtaa taagaaaggt atacatcatc ttctcgtata atgtatacct tatttatatt
      961 gatagctttt gagtaattag ctttatgaat tttgatatac tcaggacgtt cttgtttgtg
     1021 ttttacgtat aattgatttt tgtacatgtt gaactgaaag acatgaaagt aatccatttc
     1081 ttctagttcc ttgaactgtt cgctttcacg tttcgctaca agttgccata attggtgttg
     1141 taatgtggta ggtaagtgat tggcaatacc ccttgtgata tatctattca taagcgttat
     1201 cctttcgttc ggattctttc atccatgtga tgatttcact taggatagtg attgctaatt
     1261 gtgttagttt gatatattta tgcattttat tgtcctcctg ttagtaagta tcgttgatcc
     1321 aaaaggggca tgatagtgtt gtgtagatat aagaaatcca tatcgtgatt ttcgtcgata
     1381 taaccgatgg ctatgagttg tttctgatag tagaggatga agggatagat attacttttg
     1441 tgaagtgtgt atgagtagta ggtattagtc tgaagtattt tattactaag tggaccaagt
     1501 cttacgtgtt gttcaggtag aatatcatca gcgacttctt cgatggattc acattcccat
     1561 ttttcatcct ttggcagatt gaataagtta gttatatagt gtttgagttg ttgttctaat
     1621 gtcatcatta tgacctccta atgtgtttga ttgatgtatg catgtgatac atcattttga
     1681 taatatatat ttgattttta t
//
LOCUS       DANHOL010000246         1700 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.250, whole genome shotgun sequence.
ACCESSION   DANHOL010000246 DANHOL010000000
VERSION     DANHOL010000246.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 1700)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1700)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1700
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.250"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            340..894
                     /locus_tag="PTC08_002374"
     CDS             340..894
                     /locus_tag="PTC08_002374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001062593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HDK5683826.1"
                     /translation="MAIVGYARVSTQDQKLDSQIDALKEYGCTKIFSEKVSGKKFKRT
                     ELDKCLEYLREGDTLVIYKLDRLGRTTKQLIELSQWLEDNHIELQIINMNINTKDAMG
                     KMFFTMMSAFAELEANLLSERTKKGLAAARARGRKGGRPSLPDYKKREIKFLYDERKL
                     TGEEIAKQTGVSRSTVYRVINERK"
     gene            complement(1078..1173)
                     /locus_tag="PTC08_002375"
     CDS             complement(1078..1173)
                     /locus_tag="PTC08_002375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000889978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system Fst family toxin"
                     /protein_id="HDK5683827.1"
                     /translation="MQEILVQIAVTIFSGCVITLFSHWLSKRNKK"
BASE COUNT          625 a          262 c          277 g          536 t
ORIGIN      
        1 caacataaaa agtaattaaa tatattttta tacacacttg ttttatgttg ttttgggaca
       61 tatgtttaaa cttttttcgt atttataatc tttaagcctg tatgaatcac ttgttatttc
      121 aaatattttt gaatgaccgt ttttgagaca aatggtccct aaattgaatc atcttaaatt
      181 aaaccctgga ttatacaaaa tatccaggat ttaatttaag aagctcattc ccaaaacacg
      241 tattattatc tatgtgttat aattatcaaa aatcatgagt tttaataatt tgtaaagggc
      301 tctcatttac attgagatgt tattatggag gacaaagcta tggcaatagt tggttatgca
      361 cgtgtgtcaa cacaagatca aaaactagat agtcagattg atgcattaaa agagtatgga
      421 tgtactaaga tattcagtga aaaagtaagt ggcaaaaaat tcaaaagaac agaacttgat
      481 aaatgcctag aatatttgag agaaggagat acacttgtta tttataagct tgatcgtcta
      541 ggcagaacta ccaaacaatt aatagagctg tctcagtggc ttgaagataa tcatatagaa
      601 ctccaaatta ttaatatgaa tatcaataca aaagatgcta tgggaaaaat gttttttaca
      661 atgatgagcg catttgctga attagaggct aatttattaa gtgaaagaac taagaaggga
      721 cttgcagctg caagagctag aggccgtaag gggggcagac catcactccc agattataaa
      781 aaacgtgaaa tcaaattttt atatgatgaa cggaaactta caggggaaga aattgctaag
      841 caaactggtg ttagtcgctc tacggtctat cgcgttataa acgagaggaa atgattaaaa
      901 aaggatacgt tgcttaatag ggtttcaagt gcacaagaat cttttggttt taatatatca
      961 tttgtttgca aagcgaattt atgatgatat aatgtactta acaaggataa ctgcataaat
     1021 gcaccaatcc cctcactact cgcaatagtg aggggatttt tagtgcagct aagtcgctta
     1081 ttttttatta cgcttgctta gccaatgcga aaatagcgta ataacacatc cactgaaaat
     1141 agtgacagct atctgtacaa ggatttcctg cataaattaa cacctcctct caaagtcgat
     1201 ttgacgcttt gagagataag cgacctcttt attatagcat ctcatttctt cttttctaac
     1261 cttaaaaaat gttatttcta tatagtatca agacaagaag aaactcgttt caaaaaccca
     1321 aaaaaagaag ctcagatcac caaggtgatc tgagcttctt ttaggtcaaa tttgagactt
     1381 taaacccttt cccctgttag gtaaaaagtc aaaataggaa aggagaaaaa cgaaatgata
     1441 acagacatta taatcaactt tatactatca atcacagcaa gcataatagg caattacatc
     1501 acggaatttt taaaaaaata aaataactat aaattattca acgcaatttc ttcaattttt
     1561 ttccaagaat taacattccc agttaaaagt aattcacctt ctcgatgatc aaaatattga
     1621 ccatttttat ctttagcaag ataaaaatga tatcttccat gtgaatcttg aattttttgg
     1681 tccaaaatag aattcatatc
//
LOCUS       DANHOL010000247         1694 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.251, whole genome shotgun sequence.
ACCESSION   DANHOL010000247 DANHOL010000000
VERSION     DANHOL010000247.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 1694)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1694)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1694
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.251"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            30..674
                     /gene="csm3"
                     /locus_tag="PTC08_002376"
     CDS             30..674
                     /gene="csm3"
                     /locus_tag="PTC08_002376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002486018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III-A CRISPR-associated RAMP protein Csm3"
                     /protein_id="HDK5683828.1"
                     /translation="MYSKIKISGKIEVVTGLHIGGSGEVSMIGAIDSPVVRDLQTKLP
                     IIPGSSIKGKMRSLLAKNFGLKMKQTSPNEDPEELLRLFGSSEKGNIKKARLQISDAF
                     YSEASRQWFAENDVSYTETKFENSIDRLTAVAMPRQIERVTRGSEFDFIFIYNLENED
                     EVTTDFNNIKQGILLLENDYLGGGGTRGNGRVLFKDVHIETVVGDYDSSHLKLK"
     gene            684..1592
                     /gene="csm4"
                     /locus_tag="PTC08_002377"
     CDS             684..1592
                     /gene="csm4"
                     /locus_tag="PTC08_002377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002502663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III-A CRISPR-associated RAMP protein Csm4"
                     /protein_id="HDK5683829.1"
                     /translation="MVMKIFKLHFHTAVHFGNKRLSDGEMTISADTLFSALFIENLQL
                     GQSQEWLHNDLILSDTFPFVNDLLYLPKPLIKIESKEEGHHKDFKKIKYIPTYHYLQF
                     VKGEFHAEDAKDLNDIFNVGHYALETKVSLLAQSMNLEAESEPYSVGTFTFEEDAGLY
                     FIAQGSEKTMDLLEKTLNALQFSGLGGKRNTGYGRFHFEVIEDSVMSKLLNQTGKQHI
                     LLTTAMATDEEIMKACNDARYLLKKRSGFIQSTTYEEQLVKKKDFYSFAAGSVFLTPF
                     KGGTFDVGHKGNHPIFRYAKPLWLEV"
BASE COUNT          596 a          233 c          351 g          514 t
ORIGIN      
        1 cgctaaattt tatcaaaggg aggattaaaa tgtattcaaa aattaaaatt tcaggaaaaa
       61 tagaagttgt tacaggtctt catattggag gcagtggaga agtgagcatg ataggcgcca
      121 ttgattctcc agtagttaga gatttacaga caaagttacc aattattcca ggtagttcga
      181 ttaaagggaa aatgagaagc ctacttgcta aaaactttgg ccttaaaatg aaacaaacat
      241 cacctaatga agatccagaa gagttattga gattatttgg atccagtgaa aaaggaaaca
      301 tcaagaaagc acgtcttcaa atttctgatg cattttattc tgaagcatca cgccaatggt
      361 ttgcagaaaa tgacgtctca tatactgaaa ctaaatttga aaattcaatt gatcgattga
      421 cagctgtagc gatgccacga caaattgaac gagtaactag agggtctgag tttgacttta
      481 tatttattta taatcttgaa aatgaagatg aagtgacgac agattttaat aatattaaac
      541 aaggtattct tttgttagaa aatgattatc tcggtggcgg tggaacgaga ggaaatggcc
      601 gtgtactatt taaggatgtt catattgaaa cagtagtagg tgattatgat agtagtcatc
      661 taaagttgaa gtaggtgata gcggtggtca tgaaaatatt taaactacat tttcatacag
      721 ctgtacattt tgggaataaa agattatctg atggagaaat gacaatctca gctgatacct
      781 tatttagcgc gctttttatt gaaaatttac aattgggaca gagtcaagaa tggttacata
      841 atgatttgat attgagtgac acatttccat ttgttaatga cttattgtat ttgccaaagc
      901 cattaatcaa aatagaatct aaagaagaag gacaccataa ggatttcaaa aaaataaagt
      961 atattcctac ttaccattat cttcagtttg ttaaaggtga attccatgct gaagatgcta
     1021 aagatttgaa tgacattttt aatgtgggtc actatgcgct tgaaacaaaa gtatccttat
     1081 tagcgcaaag tatgaaccta gaagcagaaa gtgaaccgta ttcagtcgga acttttactt
     1141 ttgaagaaga tgcagggttg tacttcattg cgcaaggatc tgaaaaaaca atggaccttt
     1201 tagaaaagac cttaaatgcg ttacagtttt cgggactagg tggtaagcgg aatacaggct
     1261 atggaagatt ccattttgaa gtaattgaag atagtgtcat gtcgaaactt ttgaatcaaa
     1321 ctggtaaaca gcatatttta ttaactacag caatggcgac tgatgaagaa ataatgaaag
     1381 cttgtaatga tgcgcgatac ctccttaaaa agcgatcagg atttattcaa tcgacgacat
     1441 atgaagaaca acttgttaag aaaaaagatt tctatagctt tgcagcaggt tctgtatttt
     1501 tgacgccttt taaaggtggt acctttgatg taggtcataa aggaaatcac ccaatatttc
     1561 gatatgcgaa accactatgg ctggaggtgt gattatggga attgaaactt atgaagtcaa
     1621 attaaaagtg ttaggtccag ttcatattgg tgatggttcg atacggacga aacatgagta
     1681 tatctatgat tttt
//
LOCUS       DANHOL010000248         1675 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.252, whole genome shotgun sequence.
ACCESSION   DANHOL010000248 DANHOL010000000
VERSION     DANHOL010000248.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 1675)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1675)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1675
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.252"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(200..1648)
                     /locus_tag="PTC08_002378"
     CDS             complement(200..1648)
                     /locus_tag="PTC08_002378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter"
                     /protein_id="HDK5683830.1"
                     /translation="MENKSYSKIIMTVFLIGAFFMILNETLLNIALQELMHYFDISRT
                     TVQWMASGFMMVMGIVSPLSALIIQWFTTRRLFLGLLVIFTTGSFVAGFAVNFPMLLT
                     GRMIQAMGTGLMIPLIMNAMLLLFDESVRGRVMGTFGLIIMFAPALGPTLSGVIVDYL
                     GWRWLFFSVIPFMLFTFVFAFIFLKNVGEVTRPKIDVLSIILSTVGITGLIFSVSKVS
                     SVAGGLLNWQIAVPLVIGLISIIAFIRRQFILEEPILDFRVLHYHNFRKGMIIFVIVM
                     MSMFASEIVMPMYLQGPMGFSAKVAGLILLPGALLNGLLSPFMGGLFDKFGPRKMVIP
                     GLFLLLVVAIFYTTIHPGIPVYAFVIAYIVLMVGIASIMMPASTNGLNALPQDKYPHG
                     TAIFNVLQPIAGATGIAVFVGIVSGVQNNEISKHEHVTQDIVNKAMTMGMHSAYIFAI
                     VLIVIGIFFAFRLTNASKEKKLQEAVSQSTEQ"
BASE COUNT          605 a          353 c          256 g          461 t
ORIGIN      
        1 cacggggttt atcagaattt cattttaatt gtaacattat acataactaa acagaaatat
       61 taattttaaa aaaatgaagt acatttgatt taaaaacaag accgactttc tatccttagc
      121 cttgtctatt aaaatgccca tacataagaa aaagagacta agaaatcttc atttcctagc
      181 ccttaaaaag acgatatcat cattgttctg ttgattgtga aacagcttct tgtaatttct
      241 tttctttaga agcgtttgtt aatctaaacg cgaagaaaat acctattaca atcaatacaa
      301 ttgcgaaaat ataagcactg tgcatcccca tcgtcatcgc tttgttaaca atatcttgtg
      361 tcacatgttc gtgttttgag atttcgttat tttgtacacc agaaacgata cctacaaaca
      421 ccgcaatacc tgttgcccct gcaatcggtt gtaggacgtt aaaaatcgct gtgccgtgtg
      481 gatacttatc ttgcggtaaa gcatttaaac cattcgtact tgctggcatc ataatagaag
      541 caatgccgac catgagtaca atataagcaa ttacaaaagc ataaactgga atacctggat
      601 gaatggttgt gtagaatatc gctactacca aaagtaaaaa caaaccagga ataaccattt
      661 tacgtggtcc aaatttgtca aacaatcctc ccataaatgg tgagagtaat ccattcaaca
      721 aagcacctgg taataaaata aggcctgcaa ctttagcaga gaaacccata ggtccttgta
      781 aatacattgg catcacaatt tcagatgcaa acatactcat catcacaatc acaaaaataa
      841 tcatcccttt acggaaattg tgatagtgca acacgcgaaa atctaaaata ggttcctcta
      901 aaataaactg tcgacggata aaagcgataa tactgatgag tccaataacg agtggtacgg
      961 cgatttgcca attcaataag ccgccagcta ccgaactcac tttagacaca ctgaaaatca
     1021 accctgtaat gccgaccgtt gaaagaataa ttgacagtac atcgatttta ggtcgtgtga
     1081 cttctcccac attttttaag aaaataaatg caaatacaaa tgtaaataac ataaacggaa
     1141 tgacgctaaa aaacaaccaa cgccacccta aatagtcaac aataacacct gataaagtcg
     1201 gcccgagtgc aggtgcgaac atgataatca gtccaaatgt ccccatgaca cgccctctca
     1261 ctgactcatc aaataaaagt agcatcgcat tcataataag cggaatcatc aagccagtcc
     1321 ccattgcttg aatcattcgt cctgttaata acatcggaaa attcacagca aaacctgcta
     1381 cgaatgaacc tgttgtaaaa atgacgagta gccctaaaaa taatcgtctt gtcgtaaacc
     1441 attggataat taacgcagat agtggtgaaa caattcccat gaccatcata aaaccactag
     1501 ccatccactg cacggtcgtt ctcgaaatat caaagtaatg catcagctct tgtaatgcaa
     1561 tattcaatag tgtttcattt aaaatcatga aaaaagcacc aataagaaat accgtcataa
     1621 taatttttga ataacttttg ttctccataa tttaactccc tcttttttcg aactt
//
LOCUS       DANHOL010000249         1631 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.253, whole genome shotgun sequence.
ACCESSION   DANHOL010000249 DANHOL010000000
VERSION     DANHOL010000249.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 1631)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1631)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1631
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.253"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            92..568
                     /locus_tag="PTC08_002379"
     CDS             92..568
                     /locus_tag="PTC08_002379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683831.1"
                     /translation="MILLWFGIHRYINHDEKQLKSPSVILWAISLLLYFVAIVLYQTD
                     ALHLYERIHEIALVTVFGFIVAWTYSHLYRSIDTIVYTVMIVLFTLVIFATSGPSLLV
                     SDAITMMLVIRLILTAVFVGIGVHVVIKQLKTKNMENFPLLYFFAFGYWVTIAYWL"
     gene            complement(732..1460)
                     /locus_tag="PTC08_002380"
     CDS             complement(732..1460)
                     /locus_tag="PTC08_002380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000717383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHAP domain-containing protein"
                     /protein_id="HDK5683832.1"
                     /translation="MKKLIATTSIATAGVAALTLAHGHDAQAAEYNGGYNPQDPTSYS
                     YSYTIDNQGNYHFTWEGNWSPERFNGGNASASYYTGYDATAGSSYTQPTRTYSAPSYT
                     TQTTSTSSSYSSRDYASSYTTTTTSTRSVSRGGSSANLYTVGQCTYYVFDRVGGTIGS
                     TWGNASNWASAAAAAGYTVNNRPSAGAILQTTQGAFGHVAYVESVGSDGSIRVSEMNY
                     GYGPGVVTSRTISASQAASYNYIH"
BASE COUNT          449 a          277 c          353 g          552 t
ORIGIN      
        1 ttgaatcata tatgttttag ctagatagaa aacggttata gtataaacat gaagaggtga
       61 ttccatctta tacttaatag ttctagtagc gatgattcta ttatggtttg gtattcaccg
      121 atacatcaat cacgatgaaa aacaacttaa aagtccttct gtaatattat gggctatcag
      181 cctgttactg tattttgtag cgattgtact gtatcagact gatgcccttc atttatatga
      241 gcgaatccat gaaattgcac ttgtcacagt ttttggtttc attgtggctt ggacttattc
      301 acatctttat cgctctatag atactatcgt ttatacagtg atgattgtat tgttcacact
      361 tgttattttt gccacaagtg gcccaagcct gttggtttct gatgccataa cgatgatgct
      421 cgtcatacgc ttgattttga cagcagtgtt tgtagggata ggtgtacacg tcgtcattaa
      481 gcaactgaaa actaaaaaca tggaaaactt cccattactc tatttctttg catttggtta
      541 ttgggtaacg attgcttatt ggttgtaaag catgaagtgg tttaaagtga tgagttggca
      601 tgtatggcga gcgtagcgat tttaaacttg tgagattgta aaagagaagt atgtgattca
      661 acttaaaaat acacaaaaaa gaaccctctg catatcaaaa tgcggagggt ttaatatatg
      721 aaagattcat gttagtgaat gtagttgtaa gatgctgctt ggctagctga gattgtacgg
      781 cttgttacaa caccaggacc gtaaccgtag ttcatttctg atacgcgaat agaaccatca
      841 gaaccaacgc tttcaacgta tgctacgtga ccgaaagcac cttgagttgt ttgtaaaatc
      901 gcgcctgctg atgggcggtt gtttacagtg tagcctgctg cagctgctgc gcttgcccag
      961 ttacttgcgt taccccaagt tgaaccgatt gtaccaccta cacgatcaaa tacataataa
     1021 gtacattgtc ctacagtgta taggttcgca cttgatccac ctcttgatac tgaacgtgta
     1081 gacgttgtag ttgttgtata agatgatgcg taatcacgtg aactgtatga gctagacgtg
     1141 cttgtcgttt gtgttgtgta tgatggtgcg ctgtaagtac gtgttggttg cgtgtatgaa
     1201 gaacctgctg ttgcatcgta accagtgtag taagaagctg atgcgttacc accgttaaag
     1261 cgctctggtg accagttacc ttcccatgtg aagtggtagt ttccttgatt gtcgattgtg
     1321 taagaatagc tataagacgt tgggtcttgt gggttatatc caccgttgta ttctgctgct
     1381 tgtgcatcgt gaccatgagc taatgttaaa gcagcaactc ctgctgtagc gattgaagtt
     1441 gtagcgatta attttttcat tgtaaaaaat cctcctagat aatttgttca agattataaa
     1501 gtaattcact aaagtgtgat ttgattttct gtataagtat aaaccaactg ttgtggttta
     1561 ataacgatat atactgtatc agaaaaaaaa tcgcttgtgt agtacttctt tgttttgtaa
     1621 tgtttaatca t
//
LOCUS       DANHOL010000250         1615 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.254, whole genome shotgun sequence.
ACCESSION   DANHOL010000250 DANHOL010000000
VERSION     DANHOL010000250.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 1615)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1615)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1615
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.254"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            117..1169
                     /locus_tag="PTC08_002381"
     CDS             117..1169
                     /locus_tag="PTC08_002381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HDK5683833.1"
                     /translation="MKIELGLTSFADNQDMHTENGVLPAISNGERIRNVVEEIKLADE
                     VGLDVYGLGEHHRPDYAVSSPTTVLAAAAAVTKNIKLSSAVTVLSSDDPIRVYQQFAT
                     IDALSDGRAEIMAGRGSFIESFPLFGYDLKNYEQLFDEKLELLLKINQNTIIHWEGAL
                     TPNIDGRGVYPRAVQKELPVWLATGGTPESSLKAGSLGLPITYAIIGGDPKRFRRNIA
                     MYKAVAESNGHNGDTLQVASHSWGYVADTDEQAQREFYPSVEAHHNVLAKERGWPPFS
                     NEHFQREIGPNGAMYVGSPETVAQKIIDTIEALGITRFMLHLPLGSMPHERTMHAIRL
                     FGEKVKPIVDSYFENK"
     gene            1183..1536
                     /locus_tag="PTC08_002382"
     CDS             1183..1536
                     /locus_tag="PTC08_002382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HDK5683834.1"
                     /translation="MILRYVTNLKVAKQLYDAAQPKLKGDQGMKDAFKMFNLPESMVK
                     VIGITEAVAAGLFAISIFDKRLSQVASVLTLGVLVGAIYKHIEAGQGKEGAQHAIDVA
                     SLAGLSLVDNLVNKK"
BASE COUNT          538 a          254 c          337 g          486 t
ORIGIN      
        1 tgttatttta aggcgggtac gctataaatt gaaatcggaa tctttcttat tgacaaatcg
       61 tataagagag ggatataatc ttagtataat ttttatactt gaaaggtggt gttgagatga
      121 aaattgaatt aggattgaca tcttttgcag ataaccaaga tatgcataca gaaaatggtg
      181 tattaccagc aatttcaaac ggagaacgta ttcgtaatgt tgttgaagaa attaaattag
      241 cagatgaagt aggcctagac gtctatggat taggggaaca tcaccgccct gactacgctg
      301 tatctagccc aacaacagtg cttgcggcag cagcggctgt aactaaaaac attaaattgt
      361 cgtctgcagt aacggtttta tcatcagatg atccaatccg tgtgtatcaa caatttgcga
      421 caattgatgc attatctgat ggacgtgcag aaattatggc aggtcgtggt tcatttattg
      481 aatctttccc attatttggt tacgacctta aaaactacga acaacttttt gatgaaaaat
      541 tagagctatt attgaaaatt aatcaaaata cgattataca ctgggaaggt gcattgacac
      601 caaatattga tggacgtggt gtatatccac gtgcggtaca aaaagaatta ccagtgtggt
      661 tagcaacagg cggcacacct gagtcatcat taaaagcagg atctttaggt ttaccgatta
      721 cttatgcgat aataggtggt gacccaaaaa gatttagacg taatattgcg atgtacaaag
      781 ctgttgctga atcaaatggt cataatggtg acacacttca agttgcttct cattcttggg
      841 gttacgttgc agatacggat gaacaagcgc aacgtgagtt ttatcctagt gtagaagcac
      901 atcataatgt attggctaaa gaaagaggtt ggccaccatt ctctaatgag catttccaaa
      961 gagagattgg tccaaatggt gcgatgtacg ttggtagtcc agaaacagtc gcacaaaaaa
     1021 ttattgatac catcgaggca ttaggtatta cacgatttat gttacactta ccattaggtt
     1081 ctatgccaca tgaaagaaca atgcatgcaa ttagactttt tggggaaaag gtaaaaccta
     1141 tcgtcgattc atattttgaa aacaaatagg aggaatttag aaatgatttt acgttacgtt
     1201 acaaacttaa aggtagcaaa gcaattatat gatgcagctc aaccaaaatt gaaaggtgac
     1261 caaggtatga aggacgcttt taaaatgttc aacttacctg aaagtatggt taaagtgatt
     1321 ggaattactg aagctgttgc tgctggtctt ttcgctatta gtatttttga caaacgttta
     1381 tcacaagttg cttcagtgtt aacacttggt gtattagtag gtgcaattta caaacacatt
     1441 gaagcaggtc aaggtaaaga aggtgcacaa cacgcaatcg acgtggcatc tttagcaggg
     1501 ttaagcttag ttgacaactt agttaacaaa aaataattac aataacatat tcatttgatg
     1561 tttattgtac tagctcttta gtttgaaaat ctattattga tgacgataac ttaaa
//
LOCUS       DANHOL010000251         1605 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.255, whole genome shotgun sequence.
ACCESSION   DANHOL010000251 DANHOL010000000
VERSION     DANHOL010000251.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 1605)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1605)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1605
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.255"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(<1..336)
                     /gene="csm2"
                     /locus_tag="PTC08_002383"
     CDS             complement(<1..336)
                     /gene="csm2"
                     /locus_tag="PTC08_002383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000599362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III-A CRISPR-associated protein Csm2"
                     /protein_id="HDK5683835.1"
                     /translation="MILAKTKSGVHIDLRFAHDVIKDNIEIKKNRKQQEYNVLFKGLT
                     TSKLRSLMEQVNRLYTIVFNSNSELLSDEFLDELEYLKVKFYYEAAREKSVDIFLRKT
                     FMIQIIDKAI"
     gene            complement(342..>1605)
                     /gene="cas10"
                     /locus_tag="PTC08_002384"
     CDS             complement(342..>1605)
                     /gene="cas10"
                     /locus_tag="PTC08_002384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="type III-A CRISPR-associated protein Cas10/Csm1"
                     /protein_id="HDK5683836.1"
                     /translation="KLWFIKEFGVDLSLSVAYQSCSGNALMNIDNQYKQIWQQLSQKL
                     STAKAQKYDASDIINLNNKQTFGDRECKECLRSDTDINEEGRCSVCDRIIQISNDLRD
                     KSFFILSDKGVLKMPFGKYISIVDQKEAENIMRDNALAQIYSKNNPHIGTGVSTNLWM
                     CDHDFSSKQPETKSKGISSYADRDIGIKRLGVLRADIDNLGMTFISGIDNRYNSLSRT
                     ATLSRQLSLFFKYELNQILEGYQITSIYSGGDDLFLIGAWDDIVEASLCINDKFHAFT
                     LGKLTLSAGIGIYNAKYPVSKMAFETGILEEAAKVGDKNQVTLWVDEKVYPWHILKDN
                     ILGEKYALLKEAFKNEDHHGKAFLYKILQLLRENDTIHVARLAYLLARSRMSDAFTSQ
                     MFKWAQNNEEKEYLVTALEYYIYQTREV"
BASE COUNT          509 a          321 c          195 g          580 t
ORIGIN      
        1 aattgcttta tctattattt gtatcatgaa tgtcttccgt aaaaagatat ctacactctt
       61 ttctcttgcg gcttcatagt aaaacttaac ctttaaatac tctagttcat ctaagaattc
      121 atctgaaagc aattcactgt tactgttaaa aacaatcgta tacaaacgat tcacttgttc
      181 catcaaactg cgaagtttac ttgtggtcaa acctttgaaa agaacattat attcttgttg
      241 ctttctattc ttcttaattt caatattgtc tttaatcacg tcatgtgcaa atcttaaatc
      301 aatatgaacc ccgctttttg tcttagctaa aatcatttcc gttaaacctc cctcgtttgg
      361 taaatatagt attcaagtgc tgtaaccaaa tattcttttt cttcattatt ttgagcccat
      421 ttaaacattt gacttgtaaa tgcatcagac atacgactac gagctagtag ataggctaat
      481 cgcgcgacat gtattgtgtc gttttctctt aacaactgca atattttgta taaaaaggct
      541 tttccatggt gatcttcatt tttaaaagct tcttttaata gagcatattt ctcccctaat
      601 atattgtctt ttaatatgtg ccatggatac accttttcat ctacccacaa tgtgacttga
      661 tttttatctc caactttagc cgcctcttct aaaatgcctg tttcgaaagc catttttgaa
      721 actggatact ttgcattata aataccaatg cctgctgata aagttaactt acctaaagta
      781 aacgcatgga acttatcatt aatacaaaga cttgcttcaa caatgtcatc ccaagcccca
      841 ataagaaaca aatcatctcc accagaataa atacttgtaa tttgatatcc ctctaaaatt
      901 tggttgagtt catatttaaa gaatagagaa agctgtctag acaaagtggc tgtacgagat
      961 aacgaattat atctattatc tatacctgaa atgaaagtca tgcctaaatt atcaatatct
     1021 gctctcaata cacctaaacg tttaatgcct atatctctat cagcataact actgataccc
     1081 ttactcttag tttcaggctg cttactagag aaatcatggt cacacatcca taaattagta
     1141 gagacccctg ttccaatatg tgggttgttt ttactgtaaa tttgtgctaa agcattatct
     1201 ctcattatat tttcagcttc tttttgatca actatagaaa tatactttcc aaaaggcatt
     1261 tttaaaacac ctttatcgga cagtataaaa aatgatttat ctctcaaatc attagaaatt
     1321 tgaattattc tatcacatac cgaacaacga ccttcttcat tgatatccgt atcacttctc
     1381 agacattctt tacactctct atcaccaaaa gtttgcttat tatttagatt tataatatct
     1441 gacgcatcat atttttgtgc tttcgcagtt gatagttttt gactcaactg ttgccaaatt
     1501 tgtttatact gattatcgat attcattaat gcattaccac tacaactttg ataagccaca
     1561 gaaagcgaca aatcaacacc aaactcttta ataaaccata atttt
//
LOCUS       DANHOL010000252         1591 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.256, whole genome shotgun sequence.
ACCESSION   DANHOL010000252 DANHOL010000000
VERSION     DANHOL010000252.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 1591)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1591)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1591
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.256"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            <1..1274
                     /locus_tag="PTC08_002385"
     CDS             <1..1274
                     /locus_tag="PTC08_002385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016425457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="dicarboxylate/amino acid:cation symporter"
                     /protein_id="HDK5683837.1"
                     /translation="LTVKIIIALILGIALGSIFNFYVESKFVGFIDQYVFNVIGQIFL
                     NLIFMLVVPVVFVSIVLGVIGVGDPKLLGGIGLKTLVFFLSTTAIAITLAMCLALIVK
                     PGAGHSDLLKSEEVTTYQKKLDDQKATGASPINQTFDQTLINFFPKNAIQSMTTGNML
                     QIITFAIFVGIGIMMVGERGRIVHQFFEQFNEVLMYIISMVMNVFAPIGTFGLVAHAF
                     TGAGFGAIRQLGLYFIVVLAALFIHFFVVYGGAVKFLAGRSPIEFFKGFFPAITVGFG
                     GSSSNAALPVSMECTKKMGVKPEIASFVQPLGATINMDGTAIMQGVATIFIAQLSGAD
                     LTVLQLITVVAVAVIASVGTAGVPGVGLIMLAMVLTAVDLNPAAIGIILGIDRLLDMT
                     RTAVNITGDAACALILSEREGRKLKGNMHVE"
BASE COUNT          475 a          264 c          329 g          523 t
ORIGIN      
        1 ggttaacagt gaaaattatt atagcattaa tcttagggat tgcgttaggt tcgattttca
       61 atttctatgt cgaatctaaa tttgttggat ttatcgatca atatgttttt aatgtcattg
      121 gtcaaatctt cttaaatcta atctttatgc tcgtagtacc ggttgtattc gtgtcgattg
      181 tactcggtgt aattggtgtt ggtgatccaa aattattagg cggcattggc ttaaaaacac
      241 tcgtcttttt cttatcgaca acagcgattg cgataacgtt agcgatgtgt ttagcattaa
      301 tcgttaaacc aggtgctggc cattcagact tattaaaatc agaagaagtt accacatatc
      361 aaaagaaatt agatgatcaa aaggcaactg gggcttctcc aatcaaccag acatttgatc
      421 aaactttaat taatttcttt ccaaaaaacg cgattcaatc aatgacaaca ggaaatatgc
      481 ttcagattat tacatttgcg attttcgtcg gtatcggtat tatgatggta ggcgaacgag
      541 gaaggattgt acatcaattt ttcgaacagt ttaatgaagt cctgatgtat attatatcaa
      601 tggtaatgaa tgtatttgcg ccaatcggta catttggact tgtcgcacat gcatttacag
      661 gcgcaggctt tggtgcaatc agacaacttg gtttatactt tattgttgta ttagccgcac
      721 tctttattca tttctttgtc gtctatggcg gtgcagtgaa gtttttagcg ggtcgtagcc
      781 caattgaatt tttcaaaggt ttcttcccag cgattacagt tggtttcggg ggctcaagtt
      841 ctaacgctgc acttccggtt tcaatggaat gtacgaaaaa aatgggtgtc aaaccagaaa
      901 ttgcatcttt cgttcaacct ttaggggcaa caattaatat ggatggtact gcaatcatgc
      961 aaggtgtcgc tacaattttc attgcgcaat tatctggtgc ggatttaaca gttctacagc
     1021 tcattaccgt tgtcgctgta gctgttattg cttctgtcgg aacagcaggc gtccctggtg
     1081 taggactgat catgttggcg atggtattaa ctgcagtcga tttaaatcca gccgctattg
     1141 gtattatctt aggaatcgac cgtttgttag atatgacacg tacagcagta aacattactg
     1201 gtgatgccgc atgtgcattg attctatccg aacgtgaagg acgaaaatta aaagggaata
     1261 tgcacgtaga ataaagttaa tagttggcat tagaatgtac tttagtaaaa ttaaaaatga
     1321 ataaaaagag aggaccctat atacgacaaa tagtatgtag ggttcttaat ccattaaatt
     1381 aaaaagtggc cttgtctata ttctttgata aacaaacata gcgataatag ttggttttgg
     1441 tggctcaagt tcaaacgaag tgctccctgt ttcaatggaa attacgaaaa ataggtgtta
     1501 aaccagaaat tacatctttc gttcaacctt tagccgcaac gataaagagg ttttacaata
     1561 aataagattg catagtttat tttaacgagg a
//
LOCUS       DANHOL010000253         1526 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.257, whole genome shotgun sequence.
ACCESSION   DANHOL010000253 DANHOL010000000
VERSION     DANHOL010000253.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 1526)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1526)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1526
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.257"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            48..>1526
                     /locus_tag="PTC08_002386"
     CDS             48..>1526
                     /locus_tag="PTC08_002386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000676592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HDK5683838.1"
                     /translation="MKGKIALYSRVSTSEQSEHGYSVKEQEQVLIKEVVKNFPGYDYE
                     TYTDSGISGKNIEGRPAMKRLLQDVKDNKIEMVLSWKLNRISRSMRDVFNIIHEFKEH
                     DVGYKSISENIDTSNASGEVLVTMFGLIGSIERQTLISNVKLSMNAKARSGEAITGRV
                     LGYKLSLNPLTQKNDLVIDENEANIVREIFDLYLNHNKGLKAITTVLNQKGYRTINQK
                     PFSVYGVKYILNNPVYKGYVRFNNHQNWAVQRRSGKSDKNDVILVKGKHEAIISEEVF
                     DKVHEKLASKSFKPGRPIGGDFYLRGLIKCPECGNNMVCRRTYYKTKKSKERTIKRYY
                     ICSLFNRSGSSACHSNSINAEVVERVINVHLNRILSQPDIIKQIASNVIEELKQKHSN
                     QPEIKYDIDSLEKQKAKLKTQQERLLELFLDDEMDSEMLKAKQSEMNQQLEVLDQQIK
                     EAKQANQSQDDIPNFDKLKARLILMITRFSVYLRKATPEAKNQ"
BASE COUNT          574 a          228 c          298 g          426 t
ORIGIN      
        1 gaccgatagt ctgtagcaat aatctaataa aaggagaacg gtatgatatg aagggtaaaa
       61 ttgcacttta ttcacgtgtt agtacgtctg agcagtcaga acatggttat tctgtaaaag
      121 agcaggaaca agtactcatc aaagaagttg tgaaaaattt cccaggttat gactatgaga
      181 catatactga ctcaggcatt tcaggtaaaa atattgaagg tcgtccggca atgaaacgtc
      241 tattacaaga tgttaaggat aataaaatcg aaatggtgtt aagttggaaa ttgaatcgta
      301 tctcacgatc aatgagagac gtgtttaata ttattcatga attcaaagaa catgatgtag
      361 ggtataaatc gatttctgag aatattgata catccaatgc ttctggagaa gtactcgtta
      421 caatgtttgg gttaatagga tctatagaac gccagacttt gatttccaat gtgaaacttt
      481 ctatgaatgc taaggcaagg agcggagagg caatcaccgg tcgtgtttta ggctacaaat
      541 tatcacttaa tccacttaca cagaaaaatg atttggttat cgatgaaaat gaagctaata
      601 ttgtacgtga aattttcgat ttatatttga atcataataa aggcctcaaa gccattacaa
      661 ccgtacttaa tcaaaagggg tatcgtacta ttaatcaaaa gccattttca gtgtatggtg
      721 ttaaatacat tttgaataat ccagtctata aaggctatgt cagattcaat aaccatcaaa
      781 actgggctgt acagcgaaga agtggcaaaa gtgataaaaa tgatgtgata ttggtcaaag
      841 gtaaacatga agccattata agtgaagagg tatttgacaa agttcatgaa aaattagctt
      901 ctaaaagttt taaaccgggc agacctattg gtggagattt ctacttacgt ggtcttatta
      961 aatgcccaga atgcggaaat aatatggtat gtcgacggac gtattataaa acgaaaaagt
     1021 ccaaagaacg gacaatcaag cgttattaca tttgttcctt attcaatcgt tcagggagtt
     1081 ctgcatgtca cagtaattcc atcaatgctg aagtcgtcga gcgtgtaatt aatgttcatt
     1141 tgaatcgtat tctgtctcaa ccagatatta tcaagcagat tgcgtcaaat gtgatcgaag
     1201 aactgaaaca aaagcatagt aaccaaccag aaattaaata tgacattgat agtttagaaa
     1261 aacaaaaagc taagcttaaa acacaacaag aacgattatt ggaattgttc ttagatgatg
     1321 aaatggatag cgaaatgtta aaagctaaac aaagtgaaat gaatcaacag ttagaagtat
     1381 tagaccaaca aattaaagaa gcaaaacaag caaatcaatc acaggatgat atacccaatt
     1441 ttgataagtt aaaagcacga ctcattttga tgataacacg attcagtgtg tacttaagaa
     1501 aggctacacc cgaagctaaa aatcaa
//
LOCUS       DANHOL010000254         1504 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.259, whole genome shotgun sequence.
ACCESSION   DANHOL010000254 DANHOL010000000
VERSION     DANHOL010000254.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 1504)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1504)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1504
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.259"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            38..673
                     /locus_tag="PTC08_002387"
     CDS             38..673
                     /locus_tag="PTC08_002387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY domain-containing protein"
                     /protein_id="HDK5683839.1"
                     /translation="MKFKIISLLLASGIVLAACGNDDDQKNTNNADNDTKTEQTTDNN
                     QNSHDNDRDDNDDQNTNQHTKTQTIDVKDVKTTPEDAIKTAKSSFDGDVKQVEYKKEN
                     GQWVYDIDLRSNNEEAEVKVSDKDNKVLNTNKEKEMDNDNDKTINYGDAIDFKEAVKK
                     AQEQQKGDLKKWSLDNDDGQFVYNIELMTDNGEQELVLDAKSGKVLQQEND"
     gene            complement(1067..1438)
                     /locus_tag="PTC08_002388"
                     /pseudo
     CDS             complement(1067..1438)
                     /locus_tag="PTC08_002388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168928.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
BASE COUNT          521 a          257 c          255 g          471 t
ORIGIN      
        1 tatcaattat aaatactaat attggaggtt tttaaatatg aagtttaaaa tcatatcttt
       61 attattagca tcaggaattg tcctagcagc ttgtggtaac gatgatgatc aaaaaaatac
      121 gaacaacgca gataacgaca caaaaacgga acagactact gataacaatc aaaatagcca
      181 cgacaatgat cgtgatgaca atgatgatca aaacacaaat caacacacta aaacacagac
      241 gattgatgtt aaagacgtaa aaacaacacc tgaagatgcc attaaaacag caaaatcttc
      301 atttgatggt gacgtgaaac aagtggaata taaaaaagaa aatggtcaat gggtttatga
      361 cattgattta agaagcaata atgaagaagc agaagtcaaa gtatctgaca aagataataa
      421 agtgctaaat acaaacaaag aaaaagaaat ggacaacgat aacgacaaaa cgattaatta
      481 cggagatgcc attgatttta aagaagcagt gaaaaaagca caagaacaac aaaaaggtga
      541 cttgaaaaaa tggtcattag ataacgatga cggtcaattt gtttacaaca ttgaattgat
      601 gacagataat ggtgaacaag aattagtact cgatgccaaa tctggtaaag tgttacaaca
      661 agaaaatgat taatgtgacg tcttaatatt ttgctgaact tacgctcttt cctttaagaa
      721 catgtcactt gtatgcgatt gccgtctttc ctttaagaac atgtcgcttg catacgattg
      781 ccgtcttgga ctcgcgtttc ccaggggctg aacctacaac taaccaacgc tttgattata
      841 ctgttacatt tgttgaagcg ttggtggatt ttccggttca gctgatccct cgggagtctc
      901 gtccgcccgg caatcttgca tgaacaggcg taaggaaaga gggcatttcc attctatcga
      961 cttaattgac atcatctaga tagctactcc gtcaaacttt ggccagaatt aaagtcaaaa
     1021 gcttcttgtt cgaatttatg tagtacctct ttttatgagg cgtttacatt aattctttaa
     1081 aagtatagag tcgagttttg atattttgtt tgcaagcttc tacacctaac gatattgctt
     1141 gatgtctctt accgacacca ttattaccta agaagtatat attgatacgc ttctctagaa
     1201 aatacatgga ttttaatgtg agtacttctt gtttattaat gcttggttga aatgtgaaat
     1261 caaactcaat caaatgttta atcttaggga aacttgctaa cttaatagca cgtttaaata
     1321 tttgttcagc tttatattct acttcctttt ccctcaactt aagtaaaatc tcaattaaag
     1381 atttttgatt cttggatagt gattctaaat acttcggcta atagtcatgt attttgatac
     1441 tctcttcctc atttttctta cctttatttt tctaactcat tttctttccc agcttcgtaa
     1501 tatt
//
LOCUS       DANHOL010000255         1493 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.260, whole genome shotgun sequence.
ACCESSION   DANHOL010000255 DANHOL010000000
VERSION     DANHOL010000255.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 1493)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1493)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1493
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.260"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(541..>1493)
                     /locus_tag="PTC08_002389"
     CDS             complement(541..>1493)
                     /locus_tag="PTC08_002389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DNA mismatch repair protein MutS"
                     /protein_id="HDK5683840.1"
                     /translation="VRETEILSKMTITPEFNHSLKPLSSISRLRFLLINVETIPGYFV
                     MVFKYMFLVDIHLYATLVRRFIKHYDTVLECYRYIGELDSLLAVYQYRCHYDTSEPVE
                     ADHVTFEGLTHPLIDEAVPNDFDFNQNVLITGSNASGKSTFMKAVALNLIMAQAIRTV
                     TADKFHYTPGMVKTTMANADDITSGDSYFMAELKSLKRLFLQDAAVQHYYFIDEIFKG
                     TNTTERVAASHAVLDYLNQLSHLKIIAATHDIELTEVLAHQYANYHFNEHVTDGEIVF
                     DYHIKEGPANTRNALELIRIMQFPNRIYTDAQAYVKQLET"
BASE COUNT          462 a          271 c          284 g          476 t
ORIGIN      
        1 acgtcttgct tttgatggaa ttatattcat tattgatgaa aacatcgacg aaaaatgagc
       61 ataaattaga taaaaagttg atgctattgt tttctagatt tcataaactt gcccttagtt
      121 tcgctgtatt tcatataata ttatccagaa ggctgagatg cctgatggaa tgcatactgc
      181 tgacagttgc cgcttctctt taatagtggt tactgtttat cgcagtagct gtatgacttc
      241 tcaatgttta cacttttaag aagtcgagtc agccatgcgg gggcagtagg gcgaaatctt
      301 tgtgacacat gatatttctg taaggctccc cccaatccat taacgcgtca acaagtgtaa
      361 cagtttaatc aagtcgaatt gagttgaagg gctagcccct aggaaacgcg aagccatgag
      421 ggcaatcaaa agcataattc gtgggagagg gcaattttaa cgagaatatc gcatcaataa
      481 catcaaaaat tttaatgccc tatctccttt tgcgttatat tgatcatttt tagtatactt
      541 ttaagtttca agttgcttca catatgcttg agcatccgtg taaatacgat ttggaaactg
      601 catgatgcga attaattcca gcgcatttct cgtatttgcc gggccttctt taatatgata
      661 atcaaacact atttctccgt cggtcacatg ctcattaaag tgataattag catattgatg
      721 agctaaaact tctgttaatt caatatcatg tgtcgctgcg ataattttta aatgagacag
      781 ttggtttaaa taatccagga cggcgtgtga agcggcgaca cgttcagtag tatttgtccc
      841 tttgaaaatt tcatcaataa aataataatg ttgaacggct gcatcttgaa gaaacaatcg
      901 tttgagtgat ttcaattctg ccataaagta actgtcgcca cttgtgatat catcggcatt
      961 tgccattgtc gtctttacca taccaggagt gtagtgaaac ttgtcagcgg tcactgtacg
     1021 tatcgcttga gccatgatga gattcaatgc gacagctttc ataaatgttg acttaccaga
     1081 agcattagac cctgttatca aaacattttg attgaaatcg aagtcatttg gtaccgcttc
     1141 atcaatcagt ggatgggtca aaccttcaaa tgtgacatga tctgcttcaa caggctcaga
     1201 cgtatcgtaa tgacaacgat attgatacac tgctaataaa ctatccaatt ctccgatata
     1261 gcggtaacat tctaaaacgg tatcataatg tttgataaaa cgacgaacga gtgtggcgta
     1321 taaatgaata tcgactaaaa acatatactt aaaaaccatt acgaaatatc ctggaatcgt
     1381 ttcgacgtta attaataaaa aacgtaaccg cgaaatcgaa cttaatggtt ttaatgaatg
     1441 attgaactca ggtgttattg tcatttttga aagtatttca gtttctctta cga
//
LOCUS       DANHOL010000256         1481 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.261, whole genome shotgun sequence.
ACCESSION   DANHOL010000256 DANHOL010000000
VERSION     DANHOL010000256.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 1481)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1481)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1481
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.261"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(559..1473)
                     /locus_tag="PTC08_002390"
     CDS             complement(559..1473)
                     /locus_tag="PTC08_002390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001239269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TDT family transporter"
                     /protein_id="HDK5683841.1"
                     /translation="MKLQKAPLATSGLILGLLGLGNLLKDISLILNAICGILAILIWL
                     HLLYSMFHNFNHVKDQLNNPLVASVFTTFFMSGFLVTTYLNTFFSNVTVINQFIIPLW
                     VVCLIGMLLHMTIFSMKYLKRFTLENVYPSWTVLYIGIAIAGLTAPVSGYYIIGKASV
                     IYGFLATCIVLPIVFKRLKAYPLQRSIKPNTSTICAPFSLVAAAYVLTFPNANSYIII
                     IFLVLSQFFYFYIVLQLPQLLKAPFSPVFSAFTFPLVISATALKNSMSVLAFPEIWEW
                     LLLFEMLLATLIVFRVLFGYMHFFLKQA"
BASE COUNT          552 a          233 c          258 g          438 t
ORIGIN      
        1 tgtacctatg actttatcgt aagtgcttac gttgagaact tgccttagtt cattaagatt
       61 tgcttcaaaa gtcttaacta ttcttcttaa ttacgacgaa cgctttaagt cagtatataa
      121 tttttttagt gaagcacttg ctaattacta atctttactc tattattgtt attaaggaaa
      181 taaactatat gtttgtaggc cctgcgtcgt aagatgtagg gctgagtttt tgtgtatgta
      241 ttaatttatc tttaaaatac atttcttggt gaaagtaaca gattataacc tcacgcatgc
      301 aggcagtgaa tacttatttg aatacgttat ttagtaagta atgtaaattg acaggaagta
      361 cacacatatc aaaatactga tatatcaatg gctataagtc aataccaatc aatgaaagac
      421 acgcatttca tcaagtggga ataatatata agcataataa aagagttaga aacgttgcta
      481 taatgcactt tctagccttt tttatttggc gttgaatacg ttgatactat aaacatatgc
      541 ttcccaagtg ccctattttt aggcttgttt taaaaagaaa tgcatgtaac cgaaaagcac
      601 cctaaacaca attaaggtag ctaataacat ttcaaaaagt aacagccatt cccagatttc
      661 aggaaatgcc aatactgaca tactgttttt taaagcagtt gctgagatga ctaacggaaa
      721 tgtaaaagct gaaaacactg gtgaaaaagg tgcttttaat aattgtggta actgtaaaac
      781 gatataaaaa taaaaaaatt gagacaatac taaaaaaata atgatgatgt aactattcgc
      841 attaggaaag gtaagcacat aggccgctgc cactaaagaa aacggtgcgc aaatggtaga
      901 agtattgggt ttgatagatc gttgcaatgg atatgctttt aaccgcttaa atacaatagg
      961 caaaacaata caagtggcta gaaaaccata gataacgcta gctttaccaa tgatataata
     1021 gccgctcact ggtgcagtca atccagcaat tgcaatacca atataaagga cagtccatga
     1081 tggataaaca ttctcgagag taaaacgttt taaatacttc attgaaaaaa tagtcatatg
     1141 tagcagcatt ccaataaggc acacaaccca taaagggata atgaactgat tgatgacagt
     1201 gacattgcta aaaaacgtat ttaaataagt agtgactaaa aatcctgaca tgaaaaatgt
     1261 ggtgaacaca gatgcgacca gagggttatt caattgatct ttaacatgat taaagttatg
     1321 aaacatgctg tataacaagt gaagccaaat taaaatagct aagatgccac aaatggcgtt
     1381 taaaataaga gaaatgtctt tcaagagatt ccctagtccc aacaaaccta aaatcaatcc
     1441 tgatgttgct aaaggcgctt tttgaagttt catcattgac a
//
LOCUS       DANHOL010000257         1448 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.262, whole genome shotgun sequence.
ACCESSION   DANHOL010000257 DANHOL010000000
VERSION     DANHOL010000257.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 1448)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1448)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1448
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.262"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            <1..754
                     /locus_tag="PTC08_002391"
     CDS             <1..754
                     /locus_tag="PTC08_002391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HDK5683842.1"
                     /translation="FEERDTGERKSIPVKALSSVTTTFDVVFIAVKTHQIDTILPQLK
                     TITHAQSKVILAQNGSGLLPKLEGYDAYQAVVYISGEKQEDKVRHDKDYRIQLKQDAF
                     TEQLKAVISTTALTLELEDNIEKAIWFKLIFNLGMNTLTALSRDTARLLKDERMLELC
                     KNLLKEGLQVANAEGITYEDSFVDDVIAAYRIFSDESATSMYYDTMNERVTEVEAIQG
                     YIYRQGQKHQLHIPYIETTYTLLAHQNEVRQR"
     gene            complement(1174..>1448)
                     /locus_tag="PTC08_002392"
     CDS             complement(1174..>1448)
                     /locus_tag="PTC08_002392"
                     /inference="COORDINATES: protein motif:HMM:NF025063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDK5683843.1"
                     /translation="FDNKLIDEVLKTFNIKRSLSTKGCPYDNAVAEATMKAIKTGFVK
                     QMKFENLNQLETELFDYVNWYNNFRPHSSLHYLTPVAFKNLHMKSV"
BASE COUNT          498 a          226 c          301 g          423 t
ORIGIN      
        1 atttgaagag cgtgacacag gagaacgcaa aagtatccct gtcaaagcat tgtcatctgt
       61 aacgacgacg ttcgatgtcg tgtttattgc ggtgaagacc catcaaattg atacgatttt
      121 accacaactg aagacaatta cgcacgcgca atcgaaagtg attttagcac aaaatggtag
      181 cggcttactt ccaaaattag agggctatga tgcgtatcaa gcggtcgtat atattagcgg
      241 tgaaaagcaa gaggataaag tgagacatga caaagattac cgcattcagt tgaagcaaga
      301 tgcgtttact gaacaattga aagcggtcat ttcaacgaca gcgctcacgt tagaacttga
      361 agacaatatt gagaaggcga tttggtttaa attgattttc aacctcggca tgaatacatt
      421 aactgcattg agtcgagaca cagcacgtct gttgaaagac gagcgtatgc tggaattatg
      481 taaaaacttg cttaaagaag gtttgcaagt cgctaacgca gaagggatta catacgaaga
      541 ttcatttgta gatgatgtca ttgcggcgta tcgtattttc tctgatgaaa gtgcgacgag
      601 catgtattat gatacgatga atgagcgtgt gacagaagtt gaagcaattc aaggttatat
      661 ttatagacaa ggtcaaaagc atcaacttca tattccgtac attgaaacga cctatacttt
      721 gctagcgcat caaaatgaag tcagacagcg atagagtgac acaggaaaat gtagtagtag
      781 cagtaaaatg gcccctatag atgagacact aaaaaagagt cagtctatag ggttatttta
      841 atgtataatt ttagtaacta tttcattgac taagaggtgt aaagtgatga gtaaacgttt
      901 atttactgaa gatgagattg cagatttaaa tccaacaaat acgtgcttaa tgtatcacct
      961 aaagcaatca catatacaga agaatttaga gaacattttg ttgaagaata tgaaaatgga
     1021 aagacgcctt cacaaatctt taaagaggct gggtttaata cgaaaatctt aggaagacga
     1081 atgagtaact ttagagaacg cgtacttatg atgaaagacc gacctgaagg attacaagac
     1141 acgaggaaag aaaattggaa tgtcaacagt ttattagaca cttttcatgt gtaaattttt
     1201 aaacgccaca ggcgttaaat aatgtaatga agaatgtggt ctaaaattgt tgtaccaatt
     1261 cacataatca aataattcgg tttctaactg gttcaagttt tcaaatttca tttgttttac
     1321 aaatccagtt tttattgctt tcatcgttgc ttctgcaacg gcgttatcat aaggacagcc
     1381 ttttgtactt aatgatcttt tgatgttaaa tgtttttaat acttcatcta tcaatttgtt
     1441 gtcgaatt
//
LOCUS       DANHOL010000258         1413 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.263, whole genome shotgun sequence.
ACCESSION   DANHOL010000258 DANHOL010000000
VERSION     DANHOL010000258.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 1413)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1413)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1413
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.263"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(<1..932)
                     /gene="cas10"
                     /locus_tag="PTC08_002393"
     CDS             complement(<1..932)
                     /gene="cas10"
                     /locus_tag="PTC08_002393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III-A CRISPR-associated protein Cas10/Csm1"
                     /protein_id="HDK5683844.1"
                     /translation="MDNKLTLMYGALLHDIGKVIYRSNAHTFAKGTHSKLGYQFLKQF
                     EEFNDKKLLENVKYHHYKELKNAYIEENSLAYITYIADNIASGLDRKDLIEEGDESDS
                     TEFKFNFDKFTPLYSVFNVVNGNNDESEQGKYKFNKENHVEYPSVRNTQYSSGHYSTL
                     MKDMAYDLENRLKYSEAHFASLLKWTESMWQYIPSSTNKGQLIDVSLYDHSRITSAIA
                     TCIYDFLNEQNVTNYKQKLFSNYNQTKAFYEQEAFLILSMDMSGIQSFIYNISGSKAL
                     KSLRSRSFYLELMLEVIVDELLKRLHLSRANLLYT"
     gene            complement(945..1250)
                     /gene="cas2"
                     /locus_tag="PTC08_002394"
     CDS             complement(945..1250)
                     /gene="cas2"
                     /locus_tag="PTC08_002394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002469399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRISPR-associated endonuclease Cas2"
                     /protein_id="HDK5683845.1"
                     /translation="MYLLVCFDLSRETKDDRKKANQYRQRLLELGFNMKQWSLYERYI
                     SNTLRKEKVLDILKKELPDTGVITLYVLPDEVNDNQVTILGKEVKRKRVKEPELIFL"
BASE COUNT          437 a          270 c          179 g          527 t
ORIGIN      
        1 gtatatagta gattagccct actcaagtgt agccgtttga gtaactcatc aacaataacc
       61 tctaacatga gttccaaata aaaactacgt gaccttaaac ttttaagcgc ttttgaacca
      121 ctgatattat aaataaagct ttgtatacca ctcatatcca tactcaaaat aagaaatgct
      181 tcttgttcat aaaatgcttt cgtttgatta taatttgaaa acaatttttg cttataatta
      241 gtgacattct gttcatttaa aaagtcatag atacacgtag caatggcaga agtaatccga
      301 ctatgatcgt atagtgaaac atctattaat tgccctttat tggtagagct agggatatat
      361 tgccacatac tttctgtcca tttgagcaat gatgcgaagt gcgcctcact atacttcaat
      421 ctgttttcta aatcgtatgc catatctttc attaatgtgc tgtagtggcc acttgaatat
      481 tgagtatttc gtacgcttgg gtattcaaca tgattttctt tattaaactt atacttacct
      541 tgttctgact catcgttatt gccattcact acattaaata cactatataa cggcgtaaat
      601 ttatcaaagt taaatttgaa ttcggttgaa tcgctttcat caccttcttc aatcaaatct
      661 tttcgatcca agccactagc aatattatca gcaatgtatg taatataagc taaactattc
      721 tcttcaatat atgcattttt caattcctta taatgatgat atttcacatt ttctaataat
      781 tttttatcat taaattcttc aaattgtttc aaaaattgat atcccagttt agaatgcgta
      841 cctttcgcaa atgtatgtgc attgcttcta taaataactt taccaatatc atgtaacaaa
      901 gccccataca tgagagtcaa cttgttatcc atctctttac caccttataa aaaaatcaat
      961 tctggttctt tcacacgttt tcttttaacc tctttcccaa gaatcgtgac ttgattgtca
     1021 ttcacttcat caggcaaaac ataaagtgta atcactcctg tatctggaag ttcttttttt
     1081 aaaatgtcta ataccttctc ttttcttaat gtattactaa tgtaccgctc atataggctc
     1141 cattgtttca tattaaaacc taactcgagt aatctttgtc gatattgatt ggctttttta
     1201 cgatcatctt tggtttctct tgataaatca aaacacacga gtaaatacat taaaccccca
     1261 cctcaatcat ttgtggcagt aataaatact tggcgctgtt gtttttatag cactgattta
     1321 aggagtaagt tgtcatttta acgccatcta atagtttcat tgtctttttg tcaacaatac
     1381 aaggttcata caaaactcta attaatgctt tct
//
LOCUS       DANHOL010000259         1394 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.264, whole genome shotgun sequence.
ACCESSION   DANHOL010000259 DANHOL010000000
VERSION     DANHOL010000259.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 1394)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1394)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1394
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.264"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            18..1316
                     /locus_tag="PTC08_002395"
     CDS             18..1316
                     /locus_tag="PTC08_002395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_075773664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="B domain-containing protein"
                     /protein_id="HDK5683846.1"
                     /translation="MENKNFFSIRKLSIGVGSCLIASSLLVNTPSFAEEGDNNAEAQQ
                     NAFSEVVKLPNLSEEQRNGFIQSLKDDPSTSQDVLNEAKKLNDSQEGSQPAPDYSDEQ
                     QNAFYEILHLPNLTEEQRNGYIQSLKDDPSVSANILVEAKNMNVNQTPTQPAPSFDEA
                     QQNAFYEIVNLPNLTEEQRNGFIQSLKDDPSVSKDILVEAKKLNDSQAKPDYNEAQQN
                     AFYEILHLPNLTEEQRNGFIQSLKDDPSVSSDILAEAKKLNDSQAPKEDNNVKDNNSG
                     ENKAEDKGNKENKAEDKGSKEDKAEDKGSKEDKAKDKDNKEGKAADKGMDKAKDAMHV
                     VQPGETVEKIAKANNTTVEQIAKDNHLEDKNMILPGQKLVVDNQKAMKDSKEAKANHE
                     MKALPETGEENDMALFGTSLTGGLSLALGLYILGRGRKTN"
BASE COUNT          579 a          241 c          258 g          316 t
ORIGIN      
        1 ataaggggtt gtaatcaatg gaaaacaaaa actttttcag cattcgtaaa ttatcaattg
       61 gggtgggttc atgtttaatc gcgagctctt tacttgtgaa tacaccaagt ttcgcagaag
      121 aaggagataa taacgcagaa gcgcaacaaa acgctttctc tgaggtagta aaattaccta
      181 accttagcga agaacaacgt aatggtttca ttcaaagcct taaagatgat ccaagtacaa
      241 gtcaagatgt gcttaatgaa gctaaaaaat taaatgatag tcaagaggga tctcaacctg
      301 ctcctgatta cagtgatgaa caacaaaatg cattttatga aattttacac cttccaaact
      361 taactgaaga acaacgcaat ggctatattc aaagtcttaa agatgaccca agtgtaagcg
      421 ctaatattct tgttgaagct aaaaatatga atgttaacca aacacctaca caacctgcgc
      481 caagtttcga tgaagcgcaa caaaatgcat tctatgagat tgtaaactta ccaaatctta
      541 ctgaagagca acgtaacggt ttcatccaaa gccttaaaga cgatccaagt gtaagtaaag
      601 atatccttgt tgaagctaaa aagttaaatg acagccaagc aaaacctgat tacaatgaag
      661 cgcaacaaaa tgcattttat gaaattttac accttccaaa cttaactgaa gaacaacgta
      721 acggtttcat ccaaagcctt aaagacgatc cgagtgtaag tagtgatatt cttgctgaag
      781 ctaagaaatt aaatgacagc caagcgccta aagaagacaa caacgtaaaa gacaataatt
      841 caggtgaaaa caaagctgaa gacaaaggca acaaagaaaa caaagctgaa gataaaggca
      901 gcaaagaaga caaagctgaa gataaaggca gcaaagaaga taaagctaaa gacaaagaca
      961 acaaagaagg caaagctgca gacaaaggta tggacaaagc gaaagatgca atgcatgtcg
     1021 ttcaacctgg tgaaacagta gaaaaaattg ctaaagctaa taacacaact gtagaacaaa
     1081 tcgctaaaga taatcattta gaagataaaa acatgatttt accaggtcaa aaacttgttg
     1141 ttgacaacca aaaagcaatg aaagacagca aagaagctaa agcaaaccac gaaatgaaag
     1201 ctttacctga aacaggtgaa gaaaacgata tggcattatt cggtacatca cttacaggtg
     1261 gtcttagctt agcattaggt ttatacatct taggacgtgg cagaaaaaca aactaagatg
     1321 agaccacaaa ctgtaaaaga acagtgttaa catctttata aatcatatta aaaaactgtg
     1381 tatgtagcat tgag
//
LOCUS       DANHOL010000260         1350 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.265, whole genome shotgun sequence.
ACCESSION   DANHOL010000260 DANHOL010000000
VERSION     DANHOL010000260.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 1350)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1350)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1350
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.265"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(<1..135)
                     /locus_tag="PTC08_002396"
     CDS             complement(<1..135)
                     /locus_tag="PTC08_002396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002439250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Arm DNA-binding domain-containing protein"
                     /protein_id="HDK5683847.1"
                     /translation="MSVRKYGNGKWGYYFGYEGERYRKQGFKTKREAVEAETKAKNKV
                     M"
     gene            complement(195..665)
                     /locus_tag="PTC08_002397"
     CDS             complement(195..665)
                     /locus_tag="PTC08_002397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001253430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683848.1"
                     /translation="MKRLLFLLFASILVLSACGDNEKKEEPKKETKSKEKKVDKKEKE
                     VVEKQKQSDKQPQSQEQTNEQNQQMQQQTQNYAPQEENSTPYSDNNTVTEYYNGQSHT
                     TTNNPVRDNYDSGETDPIYEHEYKHFYTPEEAQRAKEESDRILIEDGLEPGHYE"
     gene            complement(719..1339)
                     /locus_tag="PTC08_002398"
     CDS             complement(719..1339)
                     /locus_tag="PTC08_002398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015977996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDK5683849.1"
                     /translation="MFSKNLKYLRKKHDMEQIDLAKKLGRKSASSISEWEKGKYTPKM
                     KTLSELARLFNVSINDLMEKDLSNTKSQIDTLPVTAIPVVAKISAGLPIYTEENIIEY
                     TYIPSQMTKGGKELFGLKVSGDSMDKEFREGDVVVVEKDSVVENGQIGVVNVNGYNAT
                     VKRVRYSEDKIILLPESNNSDHLPQVYTNDDEIKVVGKVVSSMKFY"
BASE COUNT          333 a          270 c          196 g          551 t
ORIGIN      
        1 cataactttg tttttagctt tcgtctctgc ttcaacagct tctctttttg ttttaaaacc
       61 ttgttttctg tatctttctc cttcatagcc aaagtaatat ccccatttac cattaccata
      121 ttttctaaca ctcatttgta tcctctcctc aaaaaagtaa aaaaataata agggtaggcg
      181 cgctaccctg aaaattattc atagtgtcca ggttctaacc catcctcaat taaaattcta
      241 tcactttcct cttttgctct ttgagcttct tctggcgtat aaaagtgttt atattcatgt
      301 tcgtaaatag ggtcggtttc tccagaatca taattatcgc gaaccgggtt gttcgttgtt
      361 gtgtgagatt gcccattgta gtattcagtg acggtattat tatcggaata cggtgttgag
      421 ttttcttctt gaggagcata attttgcgtc tgttgttgca tttgttgatt ttgttcattt
      481 gtttgctcct gtgattgcgg ttgtttatca gattgtttct gtttctctac aacttccttc
      541 tcttttttat ctactttctt ttcctttgat tttgtctctt ttttaggctc ttcttttttc
      601 tcattatctc cacatgctga taaaactaaa atactagcga acaataaaaa cagtaacctc
      661 ttcatgtttt acactcctta aaaattgttt ttatataaag cgcctctagg gcgccttgtt
      721 aataaaattt catgcttgaa acaactttac caaccacttt aatttcatcg tcatttgtat
      781 aaacttgtgg taagtgatca ctattgttag attcgggcaa taaaatgatt ttgtcttcgc
      841 tatatctcac acgctttaca gtggcattat atccattgac gttcactaca ccaatttgac
      901 cattttctac cacagaatct ttttctacga ccacgacatc accttctcga aactctttgt
      961 ccattgaatc accggacact tttaatccga acaactcttt gccaccttta gtcatttgag
     1021 aaggtatgta tgtatattcg attatatttt cttctgtgta gataggtaaa cctgcactta
     1081 ttttagcgac tactggaatt gctgtaacag gtaatgtgtc gatttgtgat ttggtattgg
     1141 ataaatcttt ttccattaaa tcgttgatgc tcacattaaa taatcttgcc aattctgaca
     1201 atgtcttcat cttaggtgtg tatttacctt tttcccattc acttatactt gaagcgcttt
     1261 ttcttcctaa ttttttagcc aagtctattt gttccatgtc atgttttttg cgtaaatatt
     1321 ttaagttttt actaaacatt tagggcacct
//
LOCUS       DANHOL010000261         1346 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.266, whole genome shotgun sequence.
ACCESSION   DANHOL010000261 DANHOL010000000
VERSION     DANHOL010000261.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 1346)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1346)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1346
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.266"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            53..511
                     /gene="bcp"
                     /locus_tag="PTC08_002399"
     CDS             53..511
                     /gene="bcp"
                     /locus_tag="PTC08_002399"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019169388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-dependent thiol peroxidase"
                     /protein_id="HDK5683850.1"
                     /translation="MLKKGDTFPDFQLENQNGEQISKASLKGQKVILYFYPRDNTPTC
                     TTEACDFRDNIAYFNDLNVQVYGVSGDSKRKHQNFIEKHQLNFDLLVDEDFQLSEAVG
                     VYQLKKSFGKESMGIVRTTFVLDEEGKIIDVIEKVKVKEQMAQLKEILEG"
     gene            518..>1346
                     /locus_tag="PTC08_002400"
     CDS             518..>1346
                     /locus_tag="PTC08_002400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyacid dehydrogenase"
                     /protein_id="HDK5683851.1"
                     /translation="MLVVSLMRLDDQETRLQEAFPHVDFKFYKHPSQLPEEVHQQMDV
                     LISYHPEVDAAFIENAPNLKWIAWYATGVNRLPFETLKKREIQLTNAGGVHAQQLTEF
                     LFAYILDDYKELKSIYEEQQARIYNHKRVTPSVKGQQILFLGTGKIPQRASQIAKILG
                     MKTIGLNTTGHAAEYFDETYPISERHHVYKEVDIVVNLLPETTDTRYLLTVEDFKAMN
                     QHTLFVNLGRGTIAQESVIVDALKNKSIRKAYLDVFEQEPLESDSELYQLDNVFLTPH
                     "
BASE COUNT          495 a          215 c          252 g          384 t
ORIGIN      
        1 tttccctatt atcgtatcat aaaatgagaa gatattagaa agaagggttg ttatgttaaa
       61 aaaaggtgac acatttccag acttccaatt agaaaatcaa aatggcgagc aaatttcaaa
      121 agcttcatta aaaggacaaa aagtaattct ctatttttac ccacgagata acacacctac
      181 atgtacaaca gaagcatgtg acttcagaga taacatcgca tactttaatg atttaaatgt
      241 gcaagtttac ggtgtaagcg gcgattcaaa acgcaaacat caaaatttca tagagaaaca
      301 tcagttaaat tttgatttgt tggtagatga agattttcaa ctttcagaag cggttggtgt
      361 ataccaattg aagaaatctt ttggtaaaga atcgatgggc atcgtacgaa caacttttgt
      421 actagatgaa gaagggaaaa ttatagatgt tattgaaaaa gtaaaagtca aagaacaaat
      481 ggcacaactt aaagaaatct tggaagggtg attctacatg ttagtcgtta gcttgatgcg
      541 tttagatgat caagaaacaa gattacaaga agcatttcct catgttgact ttaaatttta
      601 taagcatccc tctcaactgc ctgaagaagt gcaccaacaa atggatgtgt tgatttcata
      661 tcatccagaa gttgatgcag cttttattga aaacgcacca aatctaaaat ggatagcttg
      721 gtatgcgaca ggggtcaatc gtttgccttt tgaaacgctc aagaaaagag agattcaatt
      781 gactaatgca gggggtgtac atgcacaaca acttacggaa tttctgtttg cgtacatatt
      841 agatgactac aaagaactca aatcaattta tgaagaacaa caagcacgca tttataatca
      901 taaacgtgtt acaccatccg ttaaaggtca gcagatttta tttttaggta ccggaaaaat
      961 tcctcaacgt gcatcccaaa tagcaaaaat attggggatg aaaacgatag ggttaaatac
     1021 aacaggtcat gcggcagaat attttgacga gacgtatcct atttcagaac gacaccatgt
     1081 ttataaagaa gtggatatcg ttgtgaattt gttaccggaa acaacagata cacgatattt
     1141 attgaccgta gaagatttta aagcgatgaa tcaacataca ttatttgtta atttaggacg
     1201 aggtacaatt gcacaagaat cagttattgt tgatgcctta aaaaacaaat cgattcgtaa
     1261 agcatattta gatgtatttg aacaggagcc actagaatcc gattcagaac tctaccagtt
     1321 ggataatgtc tttttaacac cacata
//
LOCUS       DANHOL010000262         1337 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.267, whole genome shotgun sequence.
ACCESSION   DANHOL010000262 DANHOL010000000
VERSION     DANHOL010000262.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 1337)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1337)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1337
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.267"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            158..602
                     /locus_tag="PTC08_002401"
                     /pseudo
     CDS             158..602
                     /locus_tag="PTC08_002401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002447504.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            663..986
                     /locus_tag="PTC08_002402"
     CDS             663..986
                     /locus_tag="PTC08_002402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000931253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683852.1"
                     /translation="MRELANKIGDNQLETNSVSLLLLDFDFEHDVFDKLYSSFLKYLD
                     KVSLDSISHCELVDLIDAALPEGRELNTFIKNKIIIGFANNYFPELQVLADNIKSDMG
                     RLLSQ"
BASE COUNT          498 a          180 c          263 g          396 t
ORIGIN      
        1 gaacccatgg caataaatta cttgtaataa gattgaacta ttttatggtt acgaaggaga
       61 tgttattaaa acttggaagt aaaattaaaa ctaagggttt ttaaattcga aactaagaaa
      121 aacatttgga acattgttag cgagtgcagc tttattaatg gagatgagtc cattagcaaa
      181 tcctaaagca agcaatgtga acagtcagac ttttaaaaca gccaatgata gtacggaagc
      241 catatatgta agtgccgatg gagttaaaat aaataaaaat tctgacttgg ctattaaccc
      301 aaaagcgcaa aatcgaattg gggctacaaa gattgttaag accgctatta aattaatcat
      361 taacaataaa agcaatgcgg ttgcagtagt agaaaagtag gtggaaaaaa gcggttaatg
      421 cttttaataa agcatacact cctttagtaa aagagttaaa gcatttgttg aaatggagtg
      481 aagtccctgc taatgcagtt agagatgctg ctattagagc gggtcgtgca gctggtttat
      541 ctgagtcaca agcccatact ttaggagtga ctttaaagga agctatatct tggttatttt
      601 aatatgttaa ggaggtttat acgttaaagg aaaaagaaag ttttagatta ctttatcaag
      661 ctatacgtga actagcaaat aaaattggag ataatcaatt agaaactaat tctgttagct
      721 tattattatt agatttcgat ttcgagcatg acgttttcga taaattatac tcgtcatttt
      781 taaaatatct agataaagtc agcttggata gtataagtca ctgtgaactt gtagatttaa
      841 tagatgctgc tcttccagaa ggtagagaac ttaatacatt tataaagaat aaaataataa
      901 ttggttttgc taataattat tttccagaac tacaagtatt agcagataat ataaaatctg
      961 atatgggaag gttattaagt caataatcca attcctaagc agcatttaag gtcaactgtt
     1021 gcgacggttg ctatttatct actacacccc atcgtgtggt attttttgcg taaaaattaa
     1081 aaaaagatgg gtaaaggggt gacattatag ctcatatgaa ctataatgtg gttaggaggt
     1141 aaggggaatg aagcgaaaac aacgcataaa aaagaacacc gagaagatgt tgagtacaaa
     1201 ttaaagattg cgacctttat cccgttactc ttaacattca tctacaaggt gttctaaggt
     1261 aagaccccga atggggctcc ttacctctca ttatataaag gagtggtgaa aatgaaaaga
     1321 gaaacgaaac aaaaaat
//
LOCUS       DANHOL010000263         1336 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.268, whole genome shotgun sequence.
ACCESSION   DANHOL010000263 DANHOL010000000
VERSION     DANHOL010000263.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 1336)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1336)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1336
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.268"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            224..1054
                     /locus_tag="PTC08_002403"
     CDS             224..1054
                     /locus_tag="PTC08_002403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thermonuclease family protein"
                     /protein_id="HDK5683853.1"
                     /translation="MTDTDKNKSAKHTSQTHQEEKDKKQKNEEKDKDRDKKGKKDDGS
                     NSTSSEKESQSEHQSNHENKQSTSDNLIAALFVKHIDGDTSKFNIDGKIKTVRYLLIY
                     TPETKHPRLGVQPFGKEASNRTKSLLSSATKIEIEYDVGPKTDKYGRDLAYVFVDGKL
                     VNEILVREGLAKVAYVYPPNTKYLERLQAAEALAKQERLGIWSEQTDTVGQDAASVNT
                     AYTAPQQSTPNQNVAPQQTWFKNCTELNKVYPGGVPLGHPAYQRRLDRNHDGHACEAH
                     "
BASE COUNT          497 a          249 c          222 g          368 t
ORIGIN      
        1 aacttaattc accttcataa taaaaagaaa tcggttaagg atgtgagaaa agatgttata
       61 tctcattttt acaatgttgt tattctttgt ttggctctac aatgtttttc tgtttcttaa
      121 agtgattttc acattaatta ggaaacgccc cgtaaagcct accttaaaaa aatatggaat
      181 gagtttcatc cctcttatta ttctatttgt tatagttggg ggaatgacgg acactgataa
      241 aaacaaaagt gcaaaacata cgagtcaaac ccaccaggaa gaaaaagata aaaaacaaaa
      301 gaatgaagaa aaagataaag atagagacaa aaaaggcaaa aaagatgatg ggtcaaattc
      361 aacatcaagc gaaaaagaat cacaatctga acatcagtcg aatcacgaaa acaagcaaag
      421 tacgtcagat aacttaattg ccgctctatt cgttaaacat attgatggtg atacctcaaa
      481 attcaatatt gatggcaaaa ttaaaaccgt gcgttattta ttgatatata cacccgaaac
      541 aaaacatccg cgtttaggtg ttcaaccttt tggtaaagaa gcctccaatc gaacaaaatc
      601 actgttgagt agcgcaacaa aaattgaaat tgaatatgat gtcggtccta aaacagataa
      661 gtatggtaga gacttagcct atgtatttgt tgacggcaaa ttagtcaatg aaatcttagt
      721 cagagaagga ttagcaaaag tcgcttatgt ttacccacct aacactaagt atttagagcg
      781 tttgcaagca gctgaagcct tagcaaaaca agaaagatta ggcatatggt ctgagcaaac
      841 tgatactgtt ggacaagatg ccgcttcagt taacacagct tacacagcgc ctcaacaatc
      901 gacgccaaat caaaatgttg cacctcagca aacatggttt aaaaactgta ctgagcttaa
      961 taaagtttat cctggtgggg tcccactcgg tcatccagcc tatcaacgtc gcttagatag
     1021 aaatcacgat gggcatgctt gtgaagccca ctaatattta gcaagtacaa cataaaaact
     1081 tctaaaatgt atagaataca ctatcaataa caggctagaa gctgtcccac aacagtcatt
     1141 ctagcctaat ttttctagat agtattctcg acatattgcg cgaatgtata tgaattgata
     1201 aagactgtca tcccataatt agcaaatgga tatttctccc tattcctcca cgctttcaac
     1261 aatttatttc atacctacaa atatgagaaa acattttgat taacatacac atccctcatt
     1321 ttgcaaaatc aaatta
//
LOCUS       DANHOL010000264         1320 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.269, whole genome shotgun sequence.
ACCESSION   DANHOL010000264 DANHOL010000000
VERSION     DANHOL010000264.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 1320)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1320)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1320
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.269"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(<1..228)
                     /locus_tag="PTC08_002404"
     CDS             complement(<1..228)
                     /locus_tag="PTC08_002404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HDK5683854.1"
                     /translation="MKKGIQRLFIPITASAVLLGACGNDAPTSKDQTLISSKAGDVKV
                     EDVLKEIGNEQIASQSFKVLLNKILEKKYGDK"
     gene            complement(412..795)
                     /locus_tag="PTC08_002405"
                     /pseudo
     CDS             complement(412..795)
                     /locus_tag="PTC08_002405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168018.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            complement(909..>1320)
                     /locus_tag="PTC08_002406"
     CDS             complement(909..>1320)
                     /locus_tag="PTC08_002406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF3267 domain-containing protein"
                     /protein_id="HDK5683855.1"
                     /translation="LFIVLMLFLYPVHKLIHILTVLPYLKYLKAHKLIRQSWLPLYNI
                     YLDRPIRKSYFCICLIMPLIVITIICILVARANPEYGHYFMFLLALNAGYSVMDILYL
                     KVILSVRQGHYVEEHQNGFLLLVHNEHSKHINMS"
BASE COUNT          460 a          205 c          230 g          425 t
ORIGIN      
        1 cttatcgcca tattttttct ctaaaatttt attcaataat actttaaatg attggctagc
       61 gatttgttca ttgccaattt cttttaaaac gtcttcaact tttacgtctc ctgctttaga
      121 agaaattaaa gtttgatctt ttgaagttgg ggcatcattt ccacatgctc cgagtaatac
      181 tgcacttgct gttataggaa taaataatct ttgtatgcct ttcttcatct tttgagctcc
      241 tttatatgta attaacacac ataaatatta ccataatgtc ttgcagtaac caacgaagaa
      301 gggtataaat acgactaaaa gctgagcatg tgtccacatt tataacattt ttaatgaata
      361 attatgttat tacatgctaa tgatagtgta ggatccacac cttttctcaa attatgagga
      421 ttgtgcatgt gttgatttgc gttgttctgt caataataat gatactgaaa agcttgcaag
      481 tagtaaaaat gctgcaagat agaaactgat tgccttggaa ccagtcacat ctgttaaata
      541 tcccgtgata taagatgcga gaatggaggt agtcaaaccg ataaagttgt aagcactaaa
      601 tgatgtccct aatgcattct taagtgcatt atctacttac gactgctatt aaccccgggt
      661 tagtattcat ctttctaaca ataccataac ctattaaggc aatgcagaga atcgctaaat
      721 tgtaaaaaat actgtagatg aagtaaaaag aaatgtaaga ggtaacatga tgatcaatat
      781 cggtttatgc gtcatttttt aatcttttta gccaaatttt gatatgacag tatacagcaa
      841 attagggggg cacatattca ttgacgcaac ataaaaaaag actgatacat ttcaaaagtg
      901 aaaatgtatc agctcatatt aatatgcttt gaatgttcat tgtgtactaa caataggaaa
      961 ccgttttgat gttcttcgac gtaatgccct tgacgaactg aaaggattac ttttaagtag
     1021 agtatgtcca ttacagaata accagcattc aaagctaata aaaacataaa gtaatgacca
     1081 tactcagggt ttgcgcgtgc tacaaggata caaatgatgg taatcacaat cagtggcatg
     1141 atgagacata tacaaaaata agacttgcgt atgggacggt caagataaat attgtatagt
     1201 ggtagccaag attgacgtat taacttgtga gcttttaaat atttcaagta aggtagtacc
     1261 gtcagaatat gaataagttt gtgaacggga tataaaaata acattaagac aataaacaat
//
LOCUS       DANHOL010000265         1318 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.270, whole genome shotgun sequence.
ACCESSION   DANHOL010000265 DANHOL010000000
VERSION     DANHOL010000265.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 1318)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1318)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1318
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.270"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            171..>1318
                     /locus_tag="PTC08_002407"
     CDS             171..>1318
                     /locus_tag="PTC08_002407"
                     /inference="COORDINATES: protein motif:HMM:NF019310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDK5683856.1"
                     /translation="MKEVHKLLLGRVLTNIGDSIVLISLTWYVAVTYHNTLYLGIIGV
                     IVGVIDVFMFFLGPILDRYNIKKILCISTLAQVFIVILMSLYFLLDHHHLLILYILLS
                     MSTLFSSVIYPAESVLIPKLSTDARQVVKYNAIFQMTYKGLDVVLDALVGVLLSIFLI
                     VNIFSFNVIIFVVAFFVFKLLRLNSTTIHHKDNIEASDRILSRYLADLKEGMIYVSRP
                     KILKLLLPLSIINFSLSAVTVIYPKIAVLEGNDSKVFSLILFVNGLGLILGYLVGPRI
                     IRYIKFSKLLFSSFFILFIIWLCIYLFINVSYVYILPMFLVSNIMIGIINLAFINAFQ
                     LLPPQNMLGRVATTNETLLSILIPFGAFTGGILPQLFGTININFILVS"
BASE COUNT          406 a          175 c          228 g          509 t
ORIGIN      
        1 agaaacattt cagctcaata ttttaaagat gcaaatagtg gattgtgtgt gtttaaaatt
       61 gctattggac atttaaaagg agccaaatat tatttgctat tagatagttt taaaaaaaca
      121 aataatttga agaaaaatga ttttgttaaa aaatatgtgg agtgggtgaa atgaaagaag
      181 ttcacaagtt acttttggga cgagtgctaa caaatattgg agatagtatc gtactcatct
      241 cattaacgtg gtatgtcgct gtcacttatc ataacacgtt atacttaggc atcattggtg
      301 tcatcgtagg ggttattgat gtatttatgt tctttttagg gcccatttta gatagatata
      361 atattaaaaa aatcttatgt attagtacac ttgcacaagt ttttatagtg atactgatgt
      421 ctttgtattt cttattagat catcatcatt tgcttatttt gtacatattg ttaagtatgt
      481 ctacactatt ttcgtctgtg atttatcctg cagaaagtgt acttattcct aaattatcta
      541 ctgatgcgcg tcaagtggtt aaatataatg caatatttca aatgacatat aagggactag
      601 atgtggtatt agatgcttta gttggggttt tactcagtat atttttgata gtgaatatct
      661 tttcgtttaa tgtcatcata tttgttgtgg ccttttttgt gtttaaactg cttaggttaa
      721 attcaacaac aattcatcat aaagacaata tagaagctag cgaccgaata ttaagtcgtt
      781 atttagcaga tttaaaagaa gggatgatct acgtatcgcg tcctaaaata ttaaaacttt
      841 tgcttccttt gtccattatc aacttttctc tctcagctgt aacggtaatt tatcctaaaa
      901 tagctgtgct tgaaggaaat gatagtaaag tgttttcatt gattttattt gttaatggtc
      961 tagggctcat attaggttac ctagtaggac caagaatcat tagatatatc aagtttagca
     1021 aattactatt tagcagcttt ttcatactgt tcattatatg gttatgcatt tacctattca
     1081 ttaatgtaag ttatgtttat atattaccga tgtttttagt ttcaaatatc atgattggaa
     1141 taatcaactt agcttttatc aacgcgtttc aattattgcc acctcaaaat atgctaggtc
     1201 gtgtagcaac tacaaatgag acattactga gtattttgat accatttggg gcgttcactg
     1261 gtgggatttt acctcaactt tttggtacga tcaatatcaa ttttatttta gtgagtat
//
LOCUS       DANHOL010000266         1299 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.271, whole genome shotgun sequence.
ACCESSION   DANHOL010000266 DANHOL010000000
VERSION     DANHOL010000266.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 1299)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1299)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1299
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.271"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            16..1224
                     /locus_tag="PTC08_002408"
     CDS             16..1224
                     /locus_tag="PTC08_002408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HDK5683857.1"
                     /translation="MIFINCLGIDIGKSESVVAHYKDEVLVKEMVIQNNQNGYRYLKN
                     YIKHLDSLFILFESTGIYSRGMKRFCEIHKIDYLEMNPLEAKFKTSSLRSWKTDKSDA
                     HKLALLAFRMKDSKVQRQSEEIYFELRERARFHLEMEINQNRLKVELVETLHQTFPGL
                     EKLFTNRYSKIALSIAKAFPHPDFVSTLTHDELVEKVLHSTDKGISVNKAHKYVQKLI
                     EIQINSFPNVDKSSFLLQKVQYLCDKLLIGIEEMKEFDQEMIDLAKNTTEFENIISIP
                     GIGELTAALLIGELGNIREFKTNKQLNAFVGIDIKRYQSGTSKSRDTINKRGNKKARR
                     LLYLIIMNIIRGRNHYQSHIVDYYYKLREQPHGKTHKTAVIASINRLLKTIHYLIVNN
                     KLYDYQKAPH"
BASE COUNT          499 a          203 c          219 g          378 t
ORIGIN      
        1 tcaataaaga aaggtatgat ttttatcaac tgtttaggta ttgatatagg taagtcagaa
       61 agtgtggtcg cacattataa ggatgaagtt ttggttaaag aaatggtcat tcaaaataat
      121 caaaatggct atcgttatct taaaaattac atcaagcatc ttgattctct atttatcctc
      181 tttgaatcaa caggtattta ttcaagaggc atgaaacgct tttgtgaaat tcacaaaata
      241 gattacttag aaatgaatcc cctagaagcc aagttcaaaa cgagctcatt aagatcatgg
      301 aaaacagata agtcagacgc acataaactt gcacttcttg cctttagaat gaaagattca
      361 aaggtacaac gtcagtctga agagatttac tttgaactga gagaacgtgc gcgctttcac
      421 ttagaaatgg agataaacca aaatcgtctc aaagttgagt tagtcgaaac actacatcaa
      481 acatttccag ggttagaaaa gctatttact aacagatatt caaaaatcgc attaagtata
      541 gctaaagcat ttcctcatcc tgattttgta agtactttga ctcatgatga attggtggaa
      601 aaagtacttc attcaactga taaaggcatt tcagttaata aagctcacaa gtatgtccaa
      661 aaattaattg aaatacagat taatagtttt ccgaatgtgg acaagtcttc tttcctccta
      721 caaaaagtcc aatacttatg cgacaaactg cttattggga tagaagaaat gaaagaattt
      781 gatcaggaaa tgattgactt agctaaaaat acaactgagt ttgaaaacat tatttcaatt
      841 cctggcatcg gagaactcac agctgcattg cttattgggg aacttggtaa tattagagaa
      901 tttaaaacaa ataaacaatt gaatgcattt gtaggtattg atattaaacg gtatcaatca
      961 ggaacttcaa aaagtaggga tacgatcaac aaaagaggaa ataaaaaagc aagacgttta
     1021 ttgtacttaa tcattatgaa cattattagg ggaagaaatc attatcaaag ccatattgtg
     1081 gattattatt ataaattaag agagcagcct catgggaaaa cccacaagac tgccgtaata
     1141 gcgagtatca atcgcttatt aaagaccatt cactacttga tagtcaataa taaattatat
     1201 gattatcaga aagcaccaca ctaacgcaac catataatca tatacatcat aacaccttat
     1261 tcaaaaaagt aaaaattgga cggtctagtt cagtaatgt
//
LOCUS       DANHOL010000267         1299 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.272, whole genome shotgun sequence.
ACCESSION   DANHOL010000267 DANHOL010000000
VERSION     DANHOL010000267.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 1299)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1299)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1299
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.272"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            <1..>1299
                     /locus_tag="PTC08_002409"
     CDS             <1..>1299
                     /locus_tag="PTC08_002409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683858.1"
                     /translation="FNINHKTIYFTRDFRYYSLSFQDYHIFILGELVDVRDSKKPVNA
                     IVSDLLQYPIDSDSFLNEMSFFNGSYGLFIAHEENLYFYNDATSFLSLYYHNEKPVYA
                     SHSKLLHQLIQQIFGVEERLIKDKMRGFLDFSKFENIYKFNSNMRFELNHHELKRVYP
                     IDDYQTQEIAHVVEQVIPLMTEMVAFVYRLDRPVVMSLTGGYDSRVSLALLKNKLSHT
                     LFFTYLRTDEQKITRAQKNIYDTDKKAVQFLVDQLNLNHHFFNIDNNQGKKEVAELYA
                     HYESSHSKNMINHYSQDAQFQGVAHVKSTIFELAKGIRPLKLEAQHHDIYDFVDELKK
                     WSPIKEKAWIQQALTQFINRNALFSFLDKGYHPCDVLYLESKMNGWHSAIIQESDPYM
                     DVYNLINCRFILFQLICMNYEDRKNLAFHKSVIEQRWPLL"
BASE COUNT          426 a          203 c          229 g          441 t
ORIGIN      
        1 tttcaatatc aatcacaaaa caatttattt tactagagat tttcggtatt attcgttgtc
       61 atttcaagat tatcatatat ttattcttgg ggagctcgta gatgtgagag acagcaagaa
      121 accggttaat gcgattgtaa gtgatttgct acaatacccc attgattctg attcttttct
      181 aaatgagatg tcttttttca atggtagtta cggattattt atcgctcatg aagagaactt
      241 gtatttttat aatgatgcaa cttcttttct ttcgctgtat taccacaatg aaaagccggt
      301 ttatgcctct cattcgaaat tgttacatca attgattcaa caaatctttg gtgtagaaga
      361 gagacttatt aaggataaaa tgcgcggctt cttagatttt agtaaatttg agaacattta
      421 taaatttaat tctaatatgc gttttgaact taatcatcat gaattgaaaa gggtatatcc
      481 tattgatgat tatcagacac aagaaatagc acatgttgta gagcaagtca ttcctttgat
      541 gacagagatg gttgcgtttg tttatcgtct tgaccgtcct gttgtgatgt cacttacggg
      601 cggttatgat tcacgggtgt cacttgcatt gctgaaaaac aagctatcac atactttatt
      661 tttcacttat ttaagaactg atgaacaaaa aattactcgt gcacaaaaga atatttatga
      721 tactgataaa aaagctgtac aatttctcgt tgatcaactt aatttaaacc atcacttttt
      781 taatattgat aacaatcaag gaaaaaaaga agtcgctgaa ttatacgcac attatgaatc
      841 gagtcattct aaaaatatga ttaatcacta tagccaagat gctcagtttc aaggtgtagc
      901 ccatgtcaag tcgacaattt ttgagcttgc aaaagggata agacctttga aacttgaagc
      961 gcaacatcat gacatctatg actttgtaga cgagctgaaa aaatggtcgc ctatcaaaga
     1021 gaaggcgtgg attcaacaag cattaaccca atttatcaat agaaacgcac tcttctcatt
     1081 tttggataaa gggtatcatc catgtgatgt attataccta gagtctaaaa tgaatggttg
     1141 gcatagtgcc attattcaag aaagtgatcc ttacatggat gtgtataact taattaattg
     1201 taggtttatt ttatttcaat tgatatgtat gaattacgaa gatagaaaga atcttgcatt
     1261 tcacaagtca gtgattgaac aacgctggcc gttacttca
//
LOCUS       DANHOL010000268         1294 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.273, whole genome shotgun sequence.
ACCESSION   DANHOL010000268 DANHOL010000000
VERSION     DANHOL010000268.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 1294)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1294)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1294
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.273"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(440..1288)
                     /locus_tag="PTC08_002410"
     CDS             complement(440..1288)
                     /locus_tag="PTC08_002410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipase"
                     /protein_id="HDK5683859.1"
                     /translation="MNYIKYISSHDGTQLYTKINTTDELFSFGDETINVIIVHGLAEH
                     LDRYDELTDYLVNYDYNVIRYDQRGHGRSEGPRAYYDNQDQIIEDLTAVVDYVKAHFE
                     GKVFLIGHSMGGFAVSMFGTRFPGRVDGIITSGAVTRDNNQLFEEAYGERQIPADTYF
                     PNDMSDGLCSDPRVVENYQRDDLVLKEVSMGLTYAIIDGVIELKSRPNDFVDDVLIMH
                     GTADGLVNPQDALQFYSEIASEHKSLRLYDGLEHELFNESHYNNVIFEDVASWITEVT
                     ARKNQF"
BASE COUNT          432 a          248 c          230 g          384 t
ORIGIN      
        1 tccgaaccct taacaatccc taaacttgtc gaatggtcgg cttaatagat cacgctatgc
       61 cgacattcgt ctgcaagttt agttaagggt tcttttaatc ataaagacaa cttgactgat
      121 gaagaaaaag aattaatgag tttacgcaaa gaagttaaac agttaaaaat ggagaacgac
      181 attttaaagc aagcagcact gatcatagga cgaaaataga attcgttcaa cagaatgcac
      241 atcaatattc agtatcagca atgtgtaaag tcctaaaaat accgagaagc acttattatg
      301 attcaataaa aagaatccca aataaactta atagtgatga ttattcacaa ctagagctgt
      361 tttaattata aacttaggca gtgagagcat agtaccaatt aaagctctca ctgccttttg
      421 ttaatataca tatcaacctt taaaattgat ttttacgtgc agtcacttct gtaatccagc
      481 ttgcgacatc ttcaaaaatg acgttattgt aatgtgattc attgaaaagc tcatgttcta
      541 aaccgtcgta taggcgtaat gatttatgtt ctgacgcgat ttcactataa aattgtaaag
      601 catcttgggg gttgacgagg ccatctgctg tgccgtgcat aatgagtaca tcgtctacaa
      661 agtcattggg tctagatttt aattcaatga caccatcgat aatcgcataa gttaagccca
      721 tcgacacttc ttttaatacg aggtcgtcac gttgataatt ttcaacgaca cgtggatctg
      781 aacatagacc gtcgctcatg tcatttggaa aatacgtatc ggctggaatt tgacgttcac
      841 cgtatgcttc ttcaaataat tggttattgt cgcgtgtcac tgcaccagaa gtaataatgc
      901 catcgacacg acccgggaaa cgtgtaccaa acatagagac agcgaaaccg cccatactat
      961 gaccgattaa gaacacttta ccttcaaaat gagctttcac atagtctact acggctgtta
     1021 aatcttcaat gatttggtct tgattgtcat aataagctct tggtccttca gaacgcccat
     1081 gaccgcgttg gtcgtaacga atgacattgt aatcataatt gaccaaataa tcagttaatt
     1141 catcgtaacg atcaagatgt tcagctaaac catgtacaat aatcacatta attgtttcat
     1201 caccaaaaga gaataattcg tcagtggtat tgattttcgt ataaagctgc gtgccgtcat
     1261 gcgaagaaat atatttgata taattcattg aaaa
//
LOCUS       DANHOL010000269         1289 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.274, whole genome shotgun sequence.
ACCESSION   DANHOL010000269 DANHOL010000000
VERSION     DANHOL010000269.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 1289)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1289)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1289
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.274"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            <1..207
                     /locus_tag="PTC08_002411"
     CDS             <1..207
                     /locus_tag="PTC08_002411"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683860.1"
                     /translation="SIYRKDGENCFVGSGKRTSKKQAETDLEKRLRDLEEENKILKKA
                     MHIFAKDQKSYTSLSMNTDMNSVS"
     gene            533..925
                     /locus_tag="PTC08_002412"
     CDS             533..925
                     /locus_tag="PTC08_002412"
                     /inference="COORDINATES: protein motif:HMM:NF012870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DDE-type integrase/transposase/recombinase"
                     /protein_id="HDK5683861.1"
                     /translation="MTKALVISALNKACTIQEPREGLIHHSDRGSQYASIEYQNLLRE
                     EGIQSSMSRIENCYDKTCIASFHSIIKKELIYHQNYKIRNGAMYSIVAYLLTFYNSKS
                     VHSTLNDMNPIEFEKKYATQSPSSECTF"
BASE COUNT          451 a          223 c          240 g          375 t
ORIGIN      
        1 agtatatacc gtaaagacgg tgaaaattgt tttgtcggta gcggtaaacg gacgtcaaag
       61 aagcaagcag aaacggattt agaaaagcga ttaagagatt tagaagaaga gaataaaata
      121 ttaaaaaagg cgatgcacat ctttgccaaa gaccagaaat catatacaag tttatctatg
      181 aacaccgaca tgaattccgt gtcgtaaaga tgtgccaagt tctaggtgtt tcgagaagtg
      241 gtgatgatga ttggaaaaat cgcaagccaa gtgcgcgcac agtgaagcgt gaaggtttga
      301 agaagctcgg tataaggtct atcacaaaaa gaaatacaag gcaacgaccc attaaaagca
      361 tcagcttcct atatccccca atttattgaa ccaacagttt aaagtatcgt aacctggcag
      421 cgtatgggtc gctgacatta agtatgtcta cacgaaagaa ggatggttct atttagccac
      481 agtcatggac ttattttccc gtagaatcat tggctaggcg atggtacctc gtatgactaa
      541 agcacttgtg atatcagctt taaacaaagc atgtacaatt caagaaccta gagagggatt
      601 aatccaccac tcagaccgag gaagtcaata tgcctcaata gaatatcaaa atttactacg
      661 tgaagaaggg attcagagca gtatgagtcg tatagaaaac tgttacgaca agacatgtat
      721 agcatctttt catagtatca tcaaaaagga attgatatat catcagaact ataaaatcag
      781 gaatggagcg atgtatagca ttgtggcgta tctccttact ttttacaatt ctaaaagcgt
      841 gcattcaacg ttaaatgata tgaaccccat tgaatttgag aagaaatacg caacacaatc
      901 acctagctca gaatgtactt tttgattttc aaaagtacat gttgggctag gcaagcaagc
      961 gaagcgcggt agaattctct tttttctgtg tccgtattct tgacatagat tcaacttgct
     1021 ttaaaaaact caaaatgatt gagataatta atagctactt tactttttta agtaatatac
     1081 cgccttttat tgtagacaca ttcttcaata caacttaaat tctaataata tttcttttcc
     1141 tttctaaaat atgtgctaca aaaacatata aatccaattg ccaaaagcac ttattttcaa
     1201 cttttttaaa ttttttcgtg cttacgtgcg cccgacttca aaggtgtttt atgttgctat
     1261 tttcaagaaa tgaaaaataa taatgcttt
//
LOCUS       DANHOL010000270         1262 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.275, whole genome shotgun sequence.
ACCESSION   DANHOL010000270 DANHOL010000000
VERSION     DANHOL010000270.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 1262)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1262)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1262
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.275"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            70..>1262
                     /locus_tag="PTC08_002413"
     CDS             70..>1262
                     /locus_tag="PTC08_002413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_498728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide sugar dehydrogenase"
                     /protein_id="HDK5683862.1"
                     /translation="MKLTTVGLGYIGLPTSIMFAKHGVDVIGVDINEEAVKSLNDGHI
                     HIEEPGLQEAYEEVLATGKFKASQTPEEADAFIIAVPTPNNDDQYESCDISIVMSATK
                     SIIPYLKKGNTVIVESTIAPRTMDDHVKPLLEEHGFTIGEDLYLVHCPERVLPGKILE
                     ELIHNNRIIGGITPACIEAGKRVYSTFVKGEMIETNARTAEMSKLMENTYRDLNIALA
                     NELAKISIHLNINVLDVIEMANKHPRVNIHLPGPGVGGHCLAVDPYFIIAKDPENSPL
                     IQTGRRINRSMPAYVVETTKNMLRELTGNKIVVFGLTYKGDVDDIRESPAFDIYELLR
                     QESNLEVVTYDPHVELDFVEKDIQKAVADASLVLILSDHSEFKQLTDSDFVNMKDKVI
                     FDTKNV"
BASE COUNT          443 a          185 c          264 g          370 t
ORIGIN      
        1 gatgtcattg tgaataagtt gataaatgaa acactcaaaa caatttctat ggaagaaagg
       61 tgtatgaaag tgaaacttac aactgtagga ttaggataca ttggtttacc cacatcaatt
      121 atgtttgcga aacatggtgt agatgtgatt ggtgtagata ttaacgaaga agctgttaaa
      181 agtttaaatg atggacatat tcacatcgaa gaaccaggtt tacaagaagc ttatgaagaa
      241 gtattagcta cgggaaaatt taaagcatca caaacaccag aagaggcaga cgcgtttatt
      301 atcgcagtgc caacaccgaa taatgatgac caatatgagt cttgtgatat ttcaattgtc
      361 atgagtgcaa caaaaagcat cattccttat ttgaaaaaag ggaatactgt gattgttgaa
      421 tcaacaatag caccgagaac gatggatgac catgttaaac cgttattaga agaacacgga
      481 tttacaattg gagaagattt ataccttgtt cattgtcccg aacgcgtact accggggaaa
      541 atattagaag aattaattca taataatcga attattggtg gaatcacacc agcgtgtatc
      601 gaagcaggga agcgtgttta tagtacattt gtcaaaggcg aaatgattga aacaaacgcg
      661 cgtactgctg aaatgagtaa attgatggaa aatacctacc gtgatttaaa tattgctcta
      721 gcgaatgaat tagctaaaat cagtattcat ttaaatatta atgtattaga tgtcatcgaa
      781 atggcaaata aacatccacg tgtgaacatt catttgccag gaccaggcgt aggaggacat
      841 tgtttagctg ttgatccgta tttcatcatt gcgaaggatc ctgaaaattc tccgttgata
      901 caaacagggc gtcgaattaa tcgttccatg ccagcttatg tcgttgagac aaccaaaaat
      961 atgttgcgcg aattaactgg caataagatt gtggtttttg gtttaacgta caaaggagat
     1021 gtggatgata tccgagaatc acctgctttt gatatttatg aattacttcg tcaagaatcg
     1081 aatcttgagg tggtaacata tgaccctcat gttgaattag attttgtaga gaaagatatt
     1141 caaaaagcag tggctgatgc ttcgttagtt ttaattttaa gtgatcattc agagtttaaa
     1201 caactgactg acagcgattt tgtaaatatg aaagataaag tgatttttga tacaaaaaat
     1261 gt
//
LOCUS       DANHOL010000271         1257 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.276, whole genome shotgun sequence.
ACCESSION   DANHOL010000271 DANHOL010000000
VERSION     DANHOL010000271.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 1257)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1257)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1257
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.276"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            344..724
                     /locus_tag="PTC08_002414"
     CDS             344..724
                     /locus_tag="PTC08_002414"
                     /inference="COORDINATES: protein motif:HMM:NF013483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
                     /protein_id="HDK5683863.1"
                     /translation="MCQVLGVSRSGYYDWKNRKPSARIVKREGLKKQIYQIYIKKRYG
                     SPKITQILRRHGHTVTQRTVSRLMKELGIRSITKKKYKATTHSKHHLPIYPNLLNQQF
                     KVSQPGSVWVADITYLYTKEGGSI"
     gene            733..954
                     /locus_tag="PTC08_002415"
     CDS             733..954
                     /locus_tag="PTC08_002415"
                     /inference="COORDINATES: protein motif:HMM:NF012870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DDE-type integrase/transposase/recombinase"
                     /protein_id="HDK5683864.1"
                     /translation="MDLFSLRIIGWANAPRMTKELVMSALNKAYTIQEPKEELIHHSD
                     QGSQYASIEYQNLLREKGIQSNMSRKGNC"
     gene            1000..1173
                     /locus_tag="PTC08_002416"
     CDS             1000..1173
                     /locus_tag="PTC08_002416"
                     /inference="COORDINATES: protein motif:HMM:NF024729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
                     /protein_id="HDK5683865.1"
                     /translation="MIHHQNYKTRNEAMFSIVEYILTFYNSKRVHSTLNDMSPIEFEK
                     KYATKPPSSECTF"
BASE COUNT          462 a          209 c          255 g          331 t
ORIGIN      
        1 tgtaagtgat ggcgagaaga aaatacaatc atagctttaa agtggaagca attcaatgag
       61 tagaatcagg gagacgtgcc acagaagttt ctagaggttt agatattcct attcaaacgt
      121 taacaagatg gctgagtata tatcgtaaag acagtgaaaa aggctttgtc ggtagcggta
      181 aacgtacgac aaagaatcaa acagaagctg atttaaagaa gcgattaaga gatttagaag
      241 aagagaataa aaccttaaaa aaggctatgt acatctttgc caaagaccag aagtcatata
      301 caagtttatc tatgaacacc gacatgaatt tcgtgtcgta aagatgtgcc aagttctagg
      361 tgtttcgaga agtggttatt atgattggaa aaatcgtaag ccaagtgcac gcatagtgaa
      421 gcgtgaaggt ttgaagaagc agatttatca aatctatatt aaaaaacgat acggaagtcc
      481 caaaattaca caaatactaa gacgtcacgg acatactgta actcaaagaa ctgtcagtag
      541 attgatgaag gagctcggta taaggtctat cacaaaaaag aaatacaagg caacgaccca
      601 ttcaaagcat catcttccta tataccccaa tttattgaac cagcagttta aagtatcgca
      661 acctggcagt gtttgggtgg ctgacatcac gtatctatac acgaaagaag gcggctctat
      721 ttagcaactg ttatggattt gttttctctt agaattattg gttgggcgaa tgcacctcgt
      781 atgacaaaag aacttgtgat gtcagcttta aacaaagcgt atacaattca agaacctaaa
      841 gaggagttaa tccatcactc agatcaagga agtcaatatg cctcaataga atatcaaaat
      901 ttactacgtg aaaaagggat tcagagcaac atgagtcgta aaggaaactg ttaagacaac
      961 gcatgtatag aaccttttca tagtatcatc aaaaaggaat tgatacatca tcagaactat
     1021 aaaaccagga atgaagcgat gtttagcatt gtggagtata tccttacttt ttacaattcc
     1081 aaaagagtgc attcaacgtt aaatgatatg agccccattg aatttgagaa gaaatacgca
     1141 acaaaaccac ctagctcaga atgtactttt tgatttttaa aagtacattc tgagctaggc
     1201 aagcaagcga agcgcggtag aattctcttt tttctgtgtc cgtattcttg acataga
//
LOCUS       DANHOL010000272         1168 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.277, whole genome shotgun sequence.
ACCESSION   DANHOL010000272 DANHOL010000000
VERSION     DANHOL010000272.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 1168)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1168)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1168
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.277"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            301..894
                     /locus_tag="PTC08_002417"
     CDS             301..894
                     /locus_tag="PTC08_002417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000690636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HDK5683866.1"
                     /translation="MKIGYARVSTGLQNLNLQEDRLNAYGCEKIFSDHISGSKSKRPG
                     LDKAIEFARSGDTIVVWRLDRLGRNMEDLITLVNELNERGVSFHSLEENITMDKSSST
                     GQLLFHLFAAFAEFERNLILERSSAGRIAARARGRYGGRPEKLNQKDLNLLKTLYDNG
                     TPIKTIAEQWQVSRTTIYRYLNKLEEKEDEKQGEVSN"
     gene            866..>1168
                     /locus_tag="PTC08_002418"
     CDS             866..>1168
                     /locus_tag="PTC08_002418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000790716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HDK5683867.1"
                     /translation="MKNKEKYLTNFSEAKRKEATQKYNIIKPFILGKQSLSSISKSKG
                     IALSTLYRWNKLYKEQGLTGLIHNTRVDKGEHKLKQNIIDEIKSLALKNKRNSIATI"
BASE COUNT          453 a          154 c          212 g          349 t
ORIGIN      
        1 attgcgagac attttaaatg atattagtaa aaagtaatta gagatatgtt tcaaacataa
       61 tacatatgta aactatgctt gactcttatt aaattagttt tgttaataac atttaaaata
      121 tattattaaa gatgagagtg tacagaaaat aaccattttc tgtacactct ctttttatgc
      181 cgaaataagt gagtaataca tatattttcg tgttcaaaaa cccaacaaaa aatctatgtt
      241 cacaaaagac cttgaaatta agttatggta cactgtatat gtatatagga ggtttgtatt
      301 ttgaaaatag gttatgcaag agtttcaact ggattacaaa atctgaattt acaggaggac
      361 cgattaaacg catatggttg tgaaaagata tttagcgacc atattagtgg ttcaaaaagt
      421 aaaagacctg gattagataa agcaattgaa tttgcgagat caggagatac gattgttgtt
      481 tggagactcg acagactagg acgtaatatg gaggatttaa tcacattagt taatgagctt
      541 aacgaacgag gtgtaagttt ccatagttta gaagaaaata taacgatgga taaatcaagt
      601 tctacaggac aattattatt tcatttattc gcagcgtttg cagaatttga acgaaattta
      661 attttagaac gttcttcagc tggccgaatt gcagcacgtg ctagaggacg ctatggaggt
      721 agacccgaaa aattaaatca aaaagattta aacttactta agacacttta tgataatggc
      781 acgccaatta agacaattgc agagcagtgg caagtttcac gtacaacgat ttatcgttac
      841 ctcaataaat tggaggaaaa ggaagatgaa aaacaaggag aagtatctaa ctaatttttc
      901 tgaagccaaa cgtaaagaag ctactcaaaa gtacaatatt ataaaacctt ttatcttggg
      961 caagcaatct ttatcaagca tttctaaaag caaaggtatt gcgttaagta cactttatag
     1021 gtggaataaa ttatataagg aacaaggtct tactggtcta attcataata caagagttga
     1081 taaaggtgag cataaattaa aacaaaacat aatagacgag attaaaagcc ttgcactcaa
     1141 gaataaaaga aatagtattg ctacgatt
//
LOCUS       DANHOL010000273         1150 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.278, whole genome shotgun sequence.
ACCESSION   DANHOL010000273 DANHOL010000000
VERSION     DANHOL010000273.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 1150)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1150)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1150
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.278"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            49..321
                     /locus_tag="PTC08_002419"
     CDS             49..321
                     /locus_tag="PTC08_002419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IreB family regulatory phosphoprotein"
                     /protein_id="HDK5683868.1"
                     /translation="MANFDKTMKFNYDELPKDNVETVLNNVYNTLEERGYNAVNQIVG
                     YLLSGDPAYIPRHNEARNQIRHIDRDDIMEELVSYYLQNHSKDEHA"
     gene            314..742
                     /gene="ruvX"
                     /locus_tag="PTC08_002420"
     CDS             314..742
                     /gene="ruvX"
                     /locus_tag="PTC08_002420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_500229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RuvX"
                     /protein_id="HDK5683869.1"
                     /translation="MLKHKIIGLDVGSRTVGIAISDLMGWTAQGLDTLQINEEENELG
                     IDALIDIIQKENVGTVVIGLPKNMNNSIGFRGEASLKYKDALAERMPNLEIIMWDERL
                     STMAAERSLLEADVSRAKRKKVIDKMAAVFILQGYLDGLN"
     gene            756..1076
                     /locus_tag="PTC08_002421"
     CDS             756..1076
                     /locus_tag="PTC08_002421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002507440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1292 domain-containing protein"
                     /protein_id="HDK5683870.1"
                     /translation="MTNENHNQEIEIKNDETLLTLFDEEGNEVLYRKMLEFYHPGFEK
                     EYVILAEEGAQADDDDLIELIPMINEPDESGEGGRFLPVETDEEWDMIEEVVNTKLDD
                     NHEH"
BASE COUNT          412 a          162 c          253 g          323 t
ORIGIN      
        1 atgtaaaatg aaagagcaat ctcattatgg tttaaggagt gttagactat ggctaatttt
       61 gataaaacaa tgaaattcaa ctatgatgaa cttccaaaag acaatgtcga aacagtttta
      121 aacaatgtct acaataccct agaagagcgc ggatataatg ctgtcaatca gattgtaggt
      181 tatttacttt caggtgatcc cgcgtacatt cctcgtcata acgaagcacg caaccaaatt
      241 agacatatcg atcgagatga tattatggaa gagttagtgt catactactt acaaaaccat
      301 agtaaggacg agcatgctta aacataaaat tatcgggtta gatgttggaa gccgtacagt
      361 tggtattgcg attagtgatt tgatgggttg gacagcacaa ggtttagata cactccaaat
      421 taacgaagaa gaaaatgagc tcggcatcga tgccttaatt gacatcatac aaaaggaaaa
      481 tgtgggtacg gttgtcattg gattaccgaa aaacatgaac aattctattg gctttcgtgg
      541 tgaagcttcg ttaaaatata aagatgcact tgcagagcgg atgccaaatc tagaaattat
      601 tatgtgggat gaacgtttaa gtacaatggc tgcagaacgt tcattgttag aagccgacgt
      661 atcgagagca aaaagaaaaa aagtgattga taaaatggct gcggtattca ttttacaagg
      721 ctatttagat ggattgaatt aaggagagag cgaatatgac aaacgaaaac cataatcaag
      781 aaattgaaat taaaaatgac gaaactttat taactttgtt tgatgaagaa ggtaatgaag
      841 tcttatatcg taaaatgtta gagttttatc acccaggttt tgaaaaagag tatgtaatcc
      901 ttgcagaaga aggcgcacaa gcagatgacg atgatttaat tgaattgatt cctatgatta
      961 acgagccaga cgaatcagga gaaggcggac gctttttacc tgttgagaca gatgaagaat
     1021 gggatatgat tgaagaagtt gtcaatacga aattggatga taatcatgag cattaattgc
     1081 tgatgcgaat taaagagtag gcattgaaag atgtgcctgc tctttttaat tgttttaaac
     1141 gattgctctc
//
LOCUS       DANHOL010000274         1142 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.279, whole genome shotgun sequence.
ACCESSION   DANHOL010000274 DANHOL010000000
VERSION     DANHOL010000274.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 1142)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1142)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1142
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.279"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            <1..559
                     /locus_tag="PTC08_002422"
     CDS             <1..559
                     /locus_tag="PTC08_002422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683871.1"
                     /translation="LYEHFNFPWLILIVIIIFRKDISKMLTRVSGVDYESSAGKVSVL
                     FSNMKQLESQMEGSEHEQIREYGEDLRNRVNIDPNPMLENEMTPYDYYFNLVHTPAFT
                     CQSIAKYGYFKTIENLYNAYLFLTMDYAKDHHRPSEIIANIYDTAMDIKRNSGVLFDE
                     AFIAKYRRFIELTYMGLAESHKEKK"
     gene            complement(724..>1142)
                     /locus_tag="PTC08_002423"
     CDS             complement(724..>1142)
                     /locus_tag="PTC08_002423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683872.1"
                     /translation="AYELDTLSEREVNDIRGLLTEAVACSFLGDVRAQNNLIWDCSFF
                     NNNKCISVGKTKTTDIYYKDFHVHLYECKTKPYFKTAQFDFMCKVQEEYAKEGTQVSL
                     FTFVLQYSHHPTFDEEIRKIPNHFEIKTLESLKQCH"
BASE COUNT          389 a          186 c          195 g          372 t
ORIGIN      
        1 cttatatgaa cattttaatt ttccttggct cattttaatc gtcatcatta tttttaggaa
       61 agatatttca aaaatgctga cgcgagtgag tggcgttgat tatgaaagca gtgccggtaa
      121 agtgagtgtg ttattttcaa atatgaagca attggaatca caaatggaag ggtcagaaca
      181 tgaacaaatt cgtgaatacg gggaagattt aaggaatcgt gtgaatatcg acccgaaccc
      241 gatgttagaa aatgaaatga caccatatga ttattatttt aatctcgttc atacacctgc
      301 attcacgtgt caatcgatcg caaagtacgg ctacttcaaa acgattgaaa atttgtacaa
      361 cgcttatctt ttccttacga tggattatgc gaaagaccat caccgcccga gcgaaattat
      421 agctaacatt tatgacacag ccatggatat taaaagaaat agtggcgttt tatttgatga
      481 ggcctttatc gcgaaatata gacggtttat cgaattaacg tatatggggc ttgcagaaag
      541 tcataaagaa aagaagtaaa tggattttgg aataaagatt atagcggagg aatacgagct
      601 ttatcattat actccgattt tcacattaat caatcgcata ttcaaaataa gaaaaacccc
      661 ctcaatatca aaatgagggg gttcataaaa acttgagtta ttattttatc taaaatagcg
      721 gcattaatga cactgtttta aactctctaa tgtttttatt tcaaagtgat taggaatttt
      781 tcttatttct tcgtcgaatg ttggatgatg gctatattgt aaaacaaaag taaacaaact
      841 aacttgtgtt ccttctttag cgtattcttc ctgaacttta cacataaaat cgaattgtgc
      901 tgttttaaaa taaggtttag ttttacattc atacagatgt acatgaaagt ctttatagta
      961 aatatcggta gttttagtct taccaacgct tatacattta ttgttattaa aaaacgaaca
     1021 atcccagata agattattct gagctctaac atctcctaaa aaagaacacg caacagcttc
     1081 tgtgagcaat cctctaatat catttacttc tctctcactc agtgtgtcta attcataagc
     1141 aa
//
LOCUS       DANHOL010000275         1142 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.280, whole genome shotgun sequence.
ACCESSION   DANHOL010000275 DANHOL010000000
VERSION     DANHOL010000275.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 1142)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1142)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1142
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.280"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            72..530
                     /gene="perR"
                     /locus_tag="PTC08_002424"
     CDS             72..530
                     /gene="perR"
                     /locus_tag="PTC08_002424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide-responsive transcriptional repressor
                     PerR"
                     /protein_id="HDK5683873.1"
                     /translation="MTAELESHDHQLKESIASLREAGVRITPQRQAILNFLIKAESHP
                     TADEIYQSLSPDFPSISVATIYNNLKVFKKTGIVKELTYGDASSRFDFDTQNHYHVIC
                     EKCGKIVDFHYPLLHEVEQLAQHVTEFDVTHHRMEIYGVCQSCKEAEKEL"
BASE COUNT          408 a          150 c          211 g          373 t
ORIGIN      
        1 gacaataaat aggtaaacct tatatattat taggtaagaa ttattattaa taagaaagac
       61 gggtgaacct aatgactgct gaattggaat ctcatgatca tcaattaaaa gagtcaatag
      121 cgtctttacg tgaagcaggc gtgcgtatta caccgcaacg tcaagcaata ttaaatttcc
      181 tcatcaaagc ggaatcacat ccaactgctg acgaaatata tcaatcatta tcacctgact
      241 tcccaagtat aagtgttgca acgatttaca ataaccttaa agtatttaaa aagacaggca
      301 ttgttaaaga gttaacatat ggtgatgcgt cgagtcgttt tgatttcgac acacagaatc
      361 attatcatgt catctgtgag aaatgtggta agattgttga cttccactat ccattacttc
      421 atgaagttga acaacttgcg caacatgtaa cagaatttga cgtcacgcat cacagaatgg
      481 agatatatgg tgtttgtcaa tcgtgtaaag aggctgaaaa agaattataa gtgattgaag
      541 gcttattcag aaagcgtatg aatgaaacgt tatgatgaat aagccttttt taagttttag
      601 tgattatttt tagtttaaga tgcgttgatt gttttgaatc gtgcatgtta attcaggtat
      661 taaatttttg aacgacgggc aacttagtaa gatgttaatc ttcttggtta gaactgaagg
      721 atatgtgtgc gttcgctttt gaattgagtg acgctataac tgtttaaatt gattcaaaag
      781 ataattcacg ctatgtttta aatgttttga tgtaaaaata actcaatacg tgttagtttt
      841 caaaaacata gtaaatttga ttagaaataa cagttgattt tgtgttgacg atgggtattc
      901 tacttggtaa gataaggaag tcgtttcgag gagattgtaa aaataatgct ttcatgattg
      961 aacgcatgta aacgaatgat taaaagtgta aaattaacgc ttgaaacttt ctccgtaaca
     1021 ttataagata ttaaatgttg aacgagacaa caacttatta acaaaaaatt taaaaaaact
     1081 ttaaattaaa tcttgacaga gaaatttgtt taaagtataa tgttttcttg taacagcaaa
     1141 aa
//
LOCUS       DANHOL010000276         1138 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.281, whole genome shotgun sequence.
ACCESSION   DANHOL010000276 DANHOL010000000
VERSION     DANHOL010000276.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 1138)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1138)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1138
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.281"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            464..907
                     /locus_tag="PTC08_002425"
     CDS             464..907
                     /locus_tag="PTC08_002425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683874.1"
                     /translation="MISIGGNKRVFDKIIESGIDGIKFSLYAIDKYEMYSRQIDRSER
                     WIEQNHKKLIELIEYVSSRGVYVKINTVVASSDDYKRAYDVMRWATKRKIGIRILNEL
                     ERNEESLEAIKCFFESLGGELRNIGSIFVAVHPVQYFMMFLKLVK"
BASE COUNT          431 a          117 c          236 g          354 t
ORIGIN      
        1 taaatcttta gatacaatat agaattatta agatattcac atttctagta tatatagtga
       61 gtacctttga aatgtattta tggctagaaa acgaatgtaa attgtctaaa tagctatgaa
      121 atttcgaaat tttcatgcga aagaaataag gagttgtgtt gagtatatta gattttataa
      181 aaccaaagaa agattttgtt catgcaccgt tgaacagtat tagaataaaa atcacagata
      241 gctgtaactg gaattgttgg tggtgtcata atgaaggaag ccataataga aatcagaaac
      301 ttaaaaaata ttgacttttt agataaagca tttttctcac attttcttga agttactaaa
      361 aaaataaata ttatgaggtt cgcctgacag ggggtgagcc tagtttgcat actaaaattg
      421 actatataat cagaaagttg aaggaaaacg gattgatcgc aaaatgattt ctattggtgg
      481 taacaaacgc gtctttgaca aaataatcga atcaggaatt gatggtataa aattcagttt
      541 atatgcgata gataaatatg aaatgtatag cagacaaatt gatcgttctg agcgatggat
      601 agaacagaac cataaaaaat tgatagagtt gatagagtat gtaagttcta gaggtgtata
      661 cgttaaaata aatactgtcg tagcttcatc agatgattat aagagagctt atgatgtgat
      721 gagatgggct acaaagagaa aaattggtat tagaatcctt aatgagttag aaagaaatga
      781 agaatcgcta gaagctatta agtgtttctt tgaatcgtta gggggggaat tgagaaatat
      841 cggaagtata ttcgtggcag ttcatccggt acaatatttt atgatgttcc tgaaattggt
      901 gaagtaggtt ttaagatatt gatttcaaac tatttacaaa gtatgtgtaa agattgtaaa
      961 gatagagaaa aaggggagtg cggagaatat ttttatggaa tacgtttaga aaacctgatg
     1021 ggaaattata acataaggct ctgtgtccat aagacatccc ctgaaacata ttacagattg
     1081 agtgagttta aatattcatc agcttttagt gagtgacaag gagaaattta atgaaaga
//
LOCUS       DANHOL010000277         1103 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.282, whole genome shotgun sequence.
ACCESSION   DANHOL010000277 DANHOL010000000
VERSION     DANHOL010000277.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 1103)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1103)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1103
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.282"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            113..502
                     /locus_tag="PTC08_002426"
     CDS             113..502
                     /locus_tag="PTC08_002426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683875.1"
                     /translation="MPYISLVSSWKNNDIDKIEDMLDDRVAAYYVNELGEPQSLTKSN
                     VIDMLRKRMNQISKMKDTQWNFEMIHRAQINDDQMIIFYVYSVENPDYPKTTKTLVAI
                     TFGDTQSLNHRIKTIYITTNVTEIHST"
BASE COUNT          378 a          223 c          160 g          342 t
ORIGIN      
        1 catcattaaa cttataccct aatctcgact ttattaatca gagatcaatt caaattttaa
       61 agccaatatg ttacattatc aatataaaga ataatgaaag agggctctta aaatgccata
      121 tatatcatta gtaagttcat ggaaaaacaa tgatattgat aaaattgagg atatgctaga
      181 tgatcgtgtc gctgcatatt atgtgaatga actcggagaa ccacagtcac tcacaaaatc
      241 aaatgtcatc gatatgttgc gaaaacgtat gaatcagatt tccaaaatga aagatacaca
      301 atggaatttt gagatgattc atcgtgcaca aatcaacgac gatcaaatga ttatatttta
      361 tgtatactcc gtagaaaatc cagattatcc aaaaacaacg aaaacacttg ttgccataac
      421 atttggagac acgcaatcac tcaaccatcg tattaaaacg atttacatca caacaaatgt
      481 cacagaaatt cactcaacat aacgccatca ttgaatgctt gacgccatca cttcaaactg
      541 tatttatctg aataaggtga gtgcaagacg tatacatcag acctcctttc aatcacgatg
      601 cagttcagca attgaatctt tcacatgcac aacatctctt tctcacttca tttcattggc
      661 gtaaattgga ctgaaagcgc gacgatacac aggattttca gttatcgttc aacatgttaa
      721 agtgggacgg ccccatcttt tgaagggaga tttctgcccc acttttgttg tgacacacac
      781 gggttcattc ataaaaaaga accgagatac gtaccatacc tcagttccct caagtaaata
      841 tccttattga cttctcactg taacctactc atatcgaaat tatttcattt cgttctcgtt
      901 tttgctcgtg tgttatttat atttaaaacc tatacgaaac gctttcatat acgcatcgtg
      961 ttatcgtgta tgcatgttaa acttattcgt aaaaacttca aaacagcagt tatttggtga
     1021 aatttctata gaaccaacgc ttagctttaa aatagtattc ccacatatac ttccccccta
     1081 ttgatttaat atacttttcg aat
//
LOCUS       DANHOL010000278         1091 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.283, whole genome shotgun sequence.
ACCESSION   DANHOL010000278 DANHOL010000000
VERSION     DANHOL010000278.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 1091)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1091)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1091
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.283"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(21..158)
                     /locus_tag="PTC08_002427"
     CDS             complement(21..158)
                     /locus_tag="PTC08_002427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic lactone autoinducer peptide"
                     /protein_id="HDK5683876.1"
                     /translation="MRILEVLFNLITNLFQSIGTFARIPISTGFFDEPEIPAELLEED
                     K"
     gene            complement(160..726)
                     /locus_tag="PTC08_002428"
     CDS             complement(160..726)
                     /locus_tag="PTC08_002428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="accessory gene regulator AgrB"
                     /protein_id="HDK5683877.1"
                     /translation="MLLIDNGIEKMALKLQQRQNLSHIEFLKVRLGMQVVVINSFKAV
                     VTYGLALLLNIFLYTLIVHLTFLALRGYSHGAHAKTSMLCHVQNIASFVVLPWLIVQY
                     DISFQFLLSLSILAAIIVIIYAPAATKKRPIAPGRVKGLKIKSIIVFIILIALAFIIP
                     APYNRFVVYGVLLQSFTLLPIFSTKEEV"
BASE COUNT          368 a          179 c          183 g          361 t
ORIGIN      
        1 ttatacacac tttctaactt ttatttgtcc tcttctaaca attcggcagg gatttctggc
       61 tcatcaaaaa atccagtact aatagggatt ctagcaaaag taccgattga ttggaataaa
      121 tttgtaataa ggttgaataa aacttctaaa attctcatgt taaacttcct ccttagtaga
      181 aaagataggt aataatgtga atgattgtaa taatacccca taaacgacaa agcgattata
      241 aggtgctggt atgatgaatg caagagctat gagtataatg aatacaataa ttgatttgat
      301 tttaaggcct ttcactcttc ctggagctat gggtcttttt ttcgttgcag cgggtgcata
      361 tatgatgaca attatcgcag ccaatatact caagcttaac aaaaattgaa acgaaatgtc
      421 atattgtact attaaccatg gtaaaacaac gaatgaagca atgttttgta catgacaaag
      481 cattgaagtt ttcgcgtgtg caccatgtga ataacccctt aaggcaagaa aagtaaggtg
      541 aacaatgagt gtgtataaaa aaatgtttaa taggagtgca agcccgtaag tcacaacagc
      601 tttaaatgag ttaatcacga caacttgcat gcctaaacgc acttttaaaa actcaatatg
      661 acttaaattc tgtcgttgtt ggagcttcag cgccattttt tcaattccat tgtcaataag
      721 taacatacgg ctctcctcct tgtctaaatt ataatacaca actattaaaa cgctttattt
      781 tttgcctaac tgttcattta tcattcctaa ctgttgtgat tggttgtttt ttaatatttt
      841 accataaatt tttaaacagt taagcataaa aatcaacaac ttacgcactg gttaacacaa
      901 ggaccaaaaa acatgttgta atatagtcat catcacattg gtgatggaga taaagtgatt
      961 ttgtattaag tgttgtcgag tacacttaag caaatttact gattaagtta agtcagatgt
     1021 tcttagtcat tgtattcttc gctcagctta catgactaag ggagcaacaa tctattggag
     1081 tctttgattt t
//
LOCUS       DANHOL010000279         1079 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.284, whole genome shotgun sequence.
ACCESSION   DANHOL010000279 DANHOL010000000
VERSION     DANHOL010000279.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 1079)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1079)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1079
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.284"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
BASE COUNT          371 a          171 c          206 g          331 t
ORIGIN      
        1 ttgcaagaag cagatgatta taattttaaa cctttggtaa aactgttgat cgatactatt
       61 tatgagaatt acaacgatta catcttggct aatttataaa gaaacaaaaa agattataag
      121 ccaagtgagt gaacataata agcttgagta acccagttat cacaaaaaat cccacacgtt
      181 gcaagtattg aatacgtatt tgaatacgtt aattatgaag tgatgtgaat tgatgagaaa
      241 taaatatcta tcaaaatatc gtaatatcaa ttgttataag ataatgaata tcaacgaaaa
      301 cttaccattt catcgagtgg gaataatgat atagtacaaa taacaggcta gaaataccgt
      361 tgtgatgcgg tttctagcct tttttattgt gcgttgaata cgttttgaat acgttaatgc
      421 taaaaattgg tatcatttgc gaacttttca gccacttggt cacgctgttt ttcagtgacg
      481 tgagcataaa tattcatatt ggttttgatg tcactatgtc ttaatctgtc ttgtacttct
      541 tggatagata accccgcttc aaaatagtgt attctaagcc accaattctc aacataatgg
      601 gaaaagctca gcgtagtagt tttcactaag gttttgacaa ggtggggaag tcgtaaatca
      661 cgacgtcatg tgtaggctac tcaaccaacc atatggctat catagcaatg tggatatgaa
      721 taaaggggga atttctaaaa agaagcgtat gcgccgttct atccgggtat tcatcggacg
      781 cccgtcattt tgtgctgggt ctgtgagtta cctaccacac ttggacaagt agacaaaagt
      841 gtcttgtcgt gattgttaag atatgcgata tattcttgat tttaaatctc cacaagtggg
      901 gaagtatgtt aaccttagca aaacatagca atattaacat aggctagtat aaaacaaata
      961 taaggattag aggagtaggc attaatctaa aataacatag cttaaaaagt ataaaaaaag
     1021 aggcaaccgt cgcaacagtt aaccttaagt acactccgca gatgtgtacc gctatttgt
//
LOCUS       DANHOL010000280         1073 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.285, whole genome shotgun sequence.
ACCESSION   DANHOL010000280 DANHOL010000000
VERSION     DANHOL010000280.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 1073)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1073)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1073
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.285"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(173..>1073)
                     /locus_tag="PTC08_002429"
     CDS             complement(173..>1073)
                     /locus_tag="PTC08_002429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="RNA-binding protein"
                     /protein_id="HDK5683878.1"
                     /translation="ENEIIGTIEFLEVKSLEGSTYHLEGPNREKIKLNASEVNEDDDL
                     EIGESYSFFVYPNRSGDLFATQNMPDITVGRYDFVRVLNTDRDGARVDVGLPREVLIP
                     WEDLPKLKALWPEKGDELLCTLRIDRDRQMFARLASETTVHQMFTPVAADKIEELRNQ
                     MIQARPYRLLRVGTFLLSEDGYKIFVHESERQEEPRLGQACDVRIIGVNDKGELNGSF
                     LPLAHERLDDDGEKIFNLLVEYEGELRFWDKSSPEAIKEVFNMSKGAFKRAIGHLYKQ
                     RLINIETGKITLTRKGWTRVEEK"
BASE COUNT          311 a          213 c          182 g          367 t
ORIGIN      
        1 taattacatt gagttaataa atatttaagg atttcaaaaa ttaagttgat agggatgaac
       61 taagtgaatt ttagtgtaag aatgttgaaa tatatgggga tttggctttt gtgtgggtgt
      121 ttaagatcaa aaaaagactt accacttggg caagtctctc atgaatgatt aactatttct
      181 cttctacacg tgtccaacct ttacgtgtca aagtgatttt acctgtttca atattgatga
      241 ggcgttgttt gtataaatga ccaattgcac gtttgaacgc acctttgctc atattaaata
      301 cttctttaat tgcttcaggg ctagatttat cccagaatcg caactcgcct tcgtattcca
      361 caagtaaatt aaatattttt tcgccatcgt catctaaccg ttcatgtgca agtggtaaaa
      421 atgaaccatt taactcccct ttatcattta caccgataat acggacgtca catgcctgcc
      481 ctaaacgtgg ttcttcttga cgttctgact catgtacaaa aattttatag ccgtcttctg
      541 ataataaaaa tgtaccaacg cgtaataaac gatatggacg tgcttgtatc atttgattac
      601 gtagttcttc tattttatct gctgcgacag gtgtaaacat ttggtgcact gttgtttctg
      661 aagctaaacg tgcaaacatt tgtctatcgc ggtcaatacg taatgtacat aatagttcgt
      721 cgcctttttc tggccataat gccttcaatt taggtaaatc ttcccatggg attaatactt
      781 cgcgaggcaa tccaacatct acacgtgccc catcacgatc tgtgtttaac acgcgtacaa
      841 aatcataccg tccaacagta atatctggca tgttttgagt ggcaaacaaa tcgccagaac
      901 ggttagggta gacgaaaaag ctatacgact cccctatttc taaatcgtca tcttcgttta
      961 cttcagatgc atttaattta attttttctc ggtttggacc ttctaagtga tatgtagaac
     1021 cttcaagcga cttcacttct aaaaattcta tcgtcccaat aatttcattt tct
//
LOCUS       DANHOL010000281         1072 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.286, whole genome shotgun sequence.
ACCESSION   DANHOL010000281 DANHOL010000000
VERSION     DANHOL010000281.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 1072)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1072)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1072
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.286"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            <1..>1072
                     /gene="argS"
                     /locus_tag="PTC08_002430"
     CDS             <1..>1072
                     /gene="argS"
                     /locus_tag="PTC08_002430"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: protein motif:HMM:TIGR00456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HDK5683879.1"
                     /translation="SSPNIAKPFSMGHLRATVIGDSIAKILEANGAKVIRINHLGDWG
                     TQFGKLMVAYKKWGEQKRVENNPILELFHLYTKFHEISKDNPHIDLEAREAFKLLESG
                     HSEYEHLWSWFRNVSMESFNALYKLLDINFDYIQGESFYNERLKETIQLLEERELLTQ
                     DDGAYIVDLEDLPPALIKKRDGASLYITRDLSAVLYRTETFNPTRILYVVGQEQSIHF
                     KQLDKLTRLLELTPVIEHIPFGLILKDGKKMSTRQGKVILLEDIIAEVEQAVLRTLEK
                     KKSNLRNKKEIAKEIAIASIKFHDLKNDRLSSYDLKIDEMLAFEGDTALYIMYTYARI
                     QSILGRTKYSDDFKVDFQFEESM"
BASE COUNT          391 a          144 c          204 g          333 t
ORIGIN      
        1 tcaagcccta atatagcgaa acctttttct atgggtcatt tgagagctac ggttattgga
       61 gatagtatcg ctaaaatact tgaagcaaat ggagcaaaag ttattagaat aaatcatttg
      121 ggagattggg gaacacaatt cggcaagtta atggttgctt ataaaaaatg gggggaacaa
      181 aaaagagttg aaaataaccc tatacttgag ctttttcatt tgtatacaaa gtttcatgaa
      241 attagtaaag ataatccaca tattgattta gaagccagag aagctttcaa acttttagaa
      301 agcggacata gtgaatacga acatttatgg tcatggtttc gaaatgtttc tatggaatct
      361 tttaatgctt tatacaagct tttggatatc aactttgatt atattcaagg agaatctttt
      421 tataatgaaa gattaaaaga aactatacaa ttattagagg aaagagaatt gttaactcaa
      481 gatgatggtg cttatattgt agatttagaa gatttaccac ctgcactgat taaaaaaaga
      541 gatggggcat ctctatatat cacgagagat ttatcagctg ttttgtatcg taccgaaacc
      601 tttaatccta cacgtatact atatgtagta ggccaagaac aatctattca tttcaagcaa
      661 ctagacaaac ttactagatt attggaatta acaccagtca tagagcatat tccttttggt
      721 ttgattttaa aagatggtaa aaaaatgtcc acaagacagg gcaaggtaat actacttgaa
      781 gacattattg cagaagtaga gcaagccgtt ctaaggactt tagaaaagaa aaagtcgaac
      841 ttaaggaata aaaaagaaat tgccaaagaa attgctattg cttctatcaa gtttcacgat
      901 cttaaaaatg atcgccttag tagctacgat ttgaaaattg atgagatgtt agcttttgaa
      961 ggggatactg cattgtacat aatgtatact tatgcaagga ttcaatctat cttaggaaga
     1021 accaaatact ctgatgattt taaggtggat tttcagtttg aggaaagtat gt
//
LOCUS       DANHOL010000282         1069 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.287, whole genome shotgun sequence.
ACCESSION   DANHOL010000282 DANHOL010000000
VERSION     DANHOL010000282.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 1069)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1069)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1069
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.287"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            240..>1069
                     /locus_tag="PTC08_002431"
     CDS             240..>1069
                     /locus_tag="PTC08_002431"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683880.1"
                     /translation="MLMSFEEEQAYLNETQHFIKNALKTLSKSQNVIKSKIIERRKEM
                     NAHETWILNMDNGNGSDNAQDLNALRMDECTYNQYHEKLKLYQNLLDRPYFGKVVLED
                     ETLYIGTQTLMDHNYRVLVCDWRTPIASLFYENELGRLSYETEKGQLFFEEVKGRRQF
                     KIIKGQLVDYVDSEMFIGDTGLMDYQMSTSRHKLGNIVSTIQKDQNEIIRLPINEDVV
                     VLGPPGSGKTAIAMQRIAYLLFKYKKKITHENLMLIAPNRIFHDYVSDVLPELGERHI
                     "
BASE COUNT          367 a          149 c          212 g          341 t
ORIGIN      
        1 agatattaat cattgacgat aagtacagag gccgtatatc aggcgcaatt cagtcgataa
       61 gtactttatt tataccattg tcctattatt tttctgcata tattaccgaa aaatatggtg
      121 caaattttgt gtatttagtt gcaggttgta ttcaattatt cattgtattg gctttattat
      181 tagacaaaaa aatgaaggtt cgtttcaatc aagtcgtttg atataaaggg ggatgtcaag
      241 tgttaatgag ttttgaagaa gaacaagcat atttaaatga gacgcaacat ttcattaaga
      301 acgcattaaa aacgttatcc aaatctcaaa acgtcattaa aagtaaaatt attgagcgac
      361 gtaaagagat gaatgcacat gagacatgga tactcaatat ggacaatggc aatggtagtg
      421 ataatgcgca agatttaaat gctttacgga tggatgagtg tacttataat cagtaccacg
      481 agaaacttaa gctctatcaa aatttacttg accgtcctta tttcggtaaa gtggtactgg
      541 aagatgaaac gttatatata ggtactcaaa ctttgatgga tcacaactat cgtgtattag
      601 tttgtgattg gaggactccg attgcaagtc tgttttatga aaatgaatta gggcgattgt
      661 catatgaaac tgaaaaaggt cagctctttt ttgaagaggt gaaaggcaga cgtcagttta
      721 aaattattaa agggcaatta gttgattatg tcgatagtga aatgtttatt ggtgatacag
      781 gattaatgga ttatcagatg agcacttctc gtcataaatt aggcaatatt gttagtacaa
      841 ttcaaaaaga tcaaaatgaa attattcgtt taccaatcaa tgaagatgtt gtcgtacttg
      901 gcccgccagg tagtgggaaa acagccatcg ctatgcaacg tattgcttat ttgctattta
      961 aatataagaa aaaaatcaca catgaaaatt taatgttaat agcacctaat cgcattttcc
     1021 atgattatgt ttcggatgtc ctgccagaac ttggcgaacg tcatatcga
//
LOCUS       DANHOL010000283         1046 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.289, whole genome shotgun sequence.
ACCESSION   DANHOL010000283 DANHOL010000000
VERSION     DANHOL010000283.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 1046)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1046)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1046
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.289"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            <1..612
                     /locus_tag="PTC08_002432"
     CDS             <1..612
                     /locus_tag="PTC08_002432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011018369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2058)-N(6))-methyltransferase
                     Erm(B)"
                     /protein_id="HDK5683881.1"
                     /translation="LTTKLAKISKQVTSIELDSHLFNLSSEKLKLNIRVTLIHQDILQ
                     FQFPNKQRYKIVGSIPYHLSTQIIKKVVFESHASDIYLIVEEGFYKRTLDIHRTLGLL
                     LHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDKYWKLYTYFVSKWVNREY
                     RQLFTKNQFHQAMKHAKVNNLSTVTYEQVLSIFNSYLLFNGRK"
     gene            758..1042
                     /locus_tag="PTC08_002433"
     CDS             758..1042
                     /locus_tag="PTC08_002433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008787627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="topoisomerase DNA-binding C4 zinc finger
                     domain-containing protein"
                     /protein_id="HDK5683882.1"
                     /translation="MPTKRSGPLVGKCPKCGNNIVLKKSFYGCSNYPECKFTLAEHFR
                     KKKLTKTNVKELLEGKETLVKGIKNKEKKPYNAVVKIGEKGYIDFISFSK"
BASE COUNT          382 a          178 c          182 g          304 t
ORIGIN      
        1 ttaacgacga aactggctaa aataagtaaa caggtaacgt ctattgaatt agacagtcat
       61 ctattcaact tatcgtcaga aaaattaaaa ctgaacattc gtgtcacttt aattcaccaa
      121 gatattctac agtttcaatt ccctaacaaa cagaggtata aaattgttgg gagtattcct
      181 taccatttaa gcacacaaat tattaaaaaa gtggtttttg aaagccatgc gtctgacatc
      241 tatctgattg ttgaagaagg attctacaag cgtaccttgg atattcaccg aacactaggg
      301 ttgctcttgc acactcaagt ctcgattcag caattgctta agctgccagc ggaatgcttt
      361 catcctaaac caaaagtaaa cagtgtctta ataaaactta cccgccatac cacagatgtt
      421 ccagataaat attggaagct atatacgtac tttgtttcaa aatgggtcaa tcgagaatat
      481 cgtcaactgt ttactaaaaa tcagtttcat caagcaatga aacacgccaa agtaaacaat
      541 ttaagtaccg ttacttatga gcaagtattg tctattttta atagttatct attatttaac
      601 gggaggaaat aattctatga gtcgcttttt taaatttgga aagttacacg ttactaaagg
      661 gaatggagat aaattattag atatactact gacagcttcc aagaagctaa agaggtccct
      721 agcgcctacg gggaatttgt atcgataagg ggtacaaatt cccactaagc gctcgggacc
      781 ccttgtagga aaatgtccta agtgtggcaa caatattgta ttaaaaaaat cgttttatgg
      841 ttgttcaaat tatcctgaat gtaagtttac tttagctgaa cattttagaa agaaaaaact
      901 aaccaaaacg aatgtaaaag aattactgga gggaaaagaa accctggtaa aaggaatcaa
      961 aaacaaagag aaaaagccct acaatgccgt tgtaaaaatt ggggaaaagg gatatattga
     1021 ttttatctct ttttcaaaat aaacat
//
LOCUS       DANHOL010000284         1018 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.291, whole genome shotgun sequence.
ACCESSION   DANHOL010000284 DANHOL010000000
VERSION     DANHOL010000284.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 1018)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1018)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1018
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.291"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(147..524)
                     /locus_tag="PTC08_002434"
     CDS             complement(147..524)
                     /locus_tag="PTC08_002434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaN family protein"
                     /protein_id="HDK5683883.1"
                     /translation="MRYLLLGIGGIFTLLGFAGAVLPLLPTTPFLLVAVLCFAKSSDR
                     FHDWLIQTKVYQAYVEDFRKHRGYTMKKKIQLLISLYIVVGFSIWMVDVTMIRLGLLV
                     MVVIQTVVLFTWVKTLPKSYDMR"
BASE COUNT          345 a          211 c          157 g          305 t
ORIGIN      
        1 gtttattata ttttcaaccg tggcaaaccc aatatcaaaa aatgacccct tgacctagca
       61 actcgataaa aaaaagcaga aacgacacgt cactatagcg tgcaatttct acttcttcat
      121 ctcgtattca gtttaacgta catatgttat cgcatatcat aactttttgg taaagtcttt
      181 acccatgtaa ataagaccac cgtttgtatt acaaccataa ccaataatcc taggcgaatc
      241 attgtcacat ccaccatcca aatcgagaat cccactacaa tgtataaact aattaataat
      301 tgtattttct ttttcatcgt atagccacga tgtttacgaa aatcttcaac gtaagcttga
      361 tacacctttg tttgtataag ccaatcatga aaacgatcgg aactcttcgc aaaacagagt
      421 acagcgacaa gtaaaaaagg cgttgtaggc aataatggta aaacggcgcc tgcaaaacct
      481 aataatgtaa agataccccc tatgcccagt aaaagatatc gcattatcct atactccttt
      541 attcataata aatttgcgtt catgcttggt gtcgaacttt tatctctaaa actatcataa
      601 cgactctttc acaaaaaaac aatcgtcttt tcaaagatgc gaccgtccta tacatcactt
      661 cgacgttcag ttattgcttg ttgtgcgact tttgttaacg ccatgtcctg catgggtaat
      721 cttaaagttg attttttgaa gtgaaacact gttaaaaagc tgtaaaaaag agatttagcc
      781 attttcgatt tttcaaattt gtgagattta aatattaacg gtatcaaaaa cggtatcacc
      841 ccacctattg caggcggggt gtttccataa aaaataccac accgtgaggg tgtggtgagt
      901 aaataggcaa ccatcgcaac agttagctcc tcacgctata actgagtaaa ttatagagta
      961 gatcgtttat caatattata acataaaaaa agagggtaac cattacggct accctcta
//
LOCUS       DANHOL010000285         1009 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.292, whole genome shotgun sequence.
ACCESSION   DANHOL010000285 DANHOL010000000
VERSION     DANHOL010000285.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 1009)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1009)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1009
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.292"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            104..184
                     /locus_tag="PTC08_002435"
                     /pseudo
     CDS             104..184
                     /locus_tag="PTC08_002435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014823505.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            232..921
                     /locus_tag="PTC08_002436"
     CDS             232..921
                     /locus_tag="PTC08_002436"
                     /inference="COORDINATES: protein motif:HMM:NF033516.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
                     /protein_id="HDK5683884.1"
                     /translation="MCQVLGVSRSGYYDWKNRKPSARVVKREGLKKHIYQIYIKSQKR
                     YGSPKITQLLRRHGHTVTQRTVSRLMKALGIRSITKKKYKATTHSKHHLPVYPNLLNQ
                     KFKVSQPGSVWVADITYVYTKEGWLYLATVMDLFPRRIIGWAMAPRMTKALVISALNK
                     VYTIQEPREGLIHHSDQGSQYALIEYQNLLREKGIQSSMSRKGNCYDNACIALWHISL
                     LFIILNEYIQR"
BASE COUNT          359 a          184 c          207 g          259 t
ORIGIN      
        1 tcaaacgtta acaagatggc tgagcatata ccgtaaagac ggtgaaaatg gttttgtcgg
       61 tagcggtaaa cggacgtcaa agaagcaagc agaaacgaat ttagaaaagc gattaagaga
      121 tttagaagaa gagaataaaa tattaaaaaa ggctatgcac atctttgcta aaaaccagaa
      181 ataatataca agtttatcta tgaacaccga catgaattcc gtgtcgtaaa gatgtgccaa
      241 gttctaggtg tttcgagaag tggttattat gattggaaaa atcgtaagcc aagtgcgcgc
      301 gtagtgaagc gtgaaggttt gaagaagcat atttatcaaa tctatattaa aagtcaaaag
      361 cgatacggaa gcccgaaaat cacacaatta ctgagacgtc atggccatac tgtcacccaa
      421 agaactgtca gtagattgat gaaggcactc ggtataaggt ctatcacaaa aaagaaatac
      481 aaggcaacga cccattcaaa gcatcatctt cctgtatacc ccaatttatt gaatcaaaag
      541 tttaaagtat cgcaacctgg cagcgtatgg gtcgctgaca ttacgtatgt ctacacgaaa
      601 gaaggatggc tctatttagc cacagtcatg gacttatttc cccgcagaat cattggttgg
      661 gcgatggcac ctcgtatgac taaagcactt gtgatatcag ctttaaacaa agtgtataca
      721 attcaagaac ctagagaggg gttaatccac cactcagacc aaggaagtca atatgcctta
      781 atagaatatc aaaatttact acgtgaaaaa gggattcaga gcagtatgag tcgtaaagga
      841 aactgctacg acaacgcatg tatagcattg tggcatatct ccttactttt tataattcta
      901 aacgagtaca ttcagcgtta aatgatatga tccccattga atttgagaag aaatacgcaa
      961 caaaatcacc tagcgcggta gaattctctt ttttctgtgt ccgtattct
//
LOCUS       DANHOL010000286         1005 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.293, whole genome shotgun sequence.
ACCESSION   DANHOL010000286 DANHOL010000000
VERSION     DANHOL010000286.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 1005)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1005)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1005
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.293"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            3..>1005
                     /gene="ltrA"
                     /locus_tag="PTC08_002437"
     CDS             3..>1005
                     /gene="ltrA"
                     /locus_tag="PTC08_002437"
                     /EC_number="2.7.7.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002479501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="group II intron reverse transcriptase/maturase"
                     /protein_id="HDK5683885.1"
                     /translation="MELVVRPDNIEKAIKKVKKNKGAPGIDGMKVSELHDHFAQYFSR
                     ITKKLLDGSYQPQAVRKVQIPKPNGKMRVLGIPVARDRVIQQAIRQVIEPGIDRTFSN
                     HSHGFRPHRSTGTALKQCAAYYEEGYKIAVDCDLKQCFDMLNHDKLMYLFERHVQDKS
                     ISTFIRRSLQVGAIDLSGEVAERKIGAPQGGVISPLLCNIYLHELDKELEKRGHRFVR
                     YADDFVIFVRTKRAGERVMSSVTKFIEKQLKLVVNEEKSKVGAVTRLKFLSCLITKVN
                     GVCRFRPTTEAKRNLIRTLRKITKRNRPGTFKEIITEINQVTRGWINYFGRGFIRVFL
                     "
BASE COUNT          342 a          183 c          221 g          259 t
ORIGIN      
        1 tgatggagct tgttgtaaga ccagacaaca tagaaaaagc tatcaagaaa gttaagaaaa
       61 acaaaggtgc tcctggaatt gacggcatga aagtcagtga acttcatgat cactttgcgc
      121 agtacttttc acggataacg aaaaaactgc ttgatggttc atatcaacct caagcagttc
      181 gaaaagttca aattcccaaa ccaaatggga aaatgcgtgt gcttggtatt cctgtcgcta
      241 gagacagagt gatacaacaa gccattagac aagtgattga accaggcatc gaccgaacat
      301 tttcaaacca tagccatggt ttcagacctc atcgtagcac aggaacagca cttaagcaat
      361 gtgctgccta ctacgaagaa ggctataaaa tagccgtaga ttgtgatttg aaacagtgct
      421 ttgacatgtt aaatcatgat aagctcatgt atttgttcga acgccatgtt caagataagt
      481 caatttccac atttatccgt agaagtttac aagtcggtgc tattgaccta tctggcgaag
      541 tcgcagaaag aaagataggt gcaccacaag ggggcgttat ctctccctta ctatgtaata
      601 tctatctaca tgaactggat aaagaactcg aaaagcgtgg acaccgattt gtacgatatg
      661 ccgatgactt tgtcatcttc gtacgcacaa aacgtgcagg cgaacgtgta atgtcgagtg
      721 taacgaaatt cattgaaaag caactgaagt tggtggtcaa tgaagagaaa agtaaagtgg
      781 gagcagtcac acgtttaaag ttcttgagtt gtctaataac caaggtaaat ggggtttgtc
      841 gtttcagacc gactacggaa gcaaaaagaa atttaatacg caccttaagg aaaataacga
      901 aacgaaatag acctggtacc tttaaagaga ttatcactga aattaaccaa gtgacgcgag
      961 gttggataaa ttactttggt agaggtttta tcagagtatt tcttg
//
LOCUS       DANHOL010000287         1004 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.294, whole genome shotgun sequence.
ACCESSION   DANHOL010000287 DANHOL010000000
VERSION     DANHOL010000287.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 1004)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1004)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1004
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.294"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(<1..858)
                     /locus_tag="PTC08_002438"
     CDS             complement(<1..858)
                     /locus_tag="PTC08_002438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HDK5683886.1"
                     /translation="MPSTEASTQSKVNFNNTDNYGDFFPHVESAIGTDERKKVTSFTS
                     SPIKENVAIKVEWKNSEGNYEGYVASGVMVSKDTVLTAAHVVYDEGRKKIAERITVYS
                     GLYGNIIRGSAKGIKTYVLKGYTSTLDSKYDLAAIKLDTNLGSLTGSLGITSTIALGD
                     KIATTGYPDDKTDRTNSSDLKYYMWRSTGKIMNLDKYRVYYDADTSGGQSGSGVWDVK
                     SNKLVAIHTNGGKTFNFGTRITPQYLDYIKYWIGTPVAHTYNKKVSISKEGQQLWGDL
                     QFLKVKSEIK"
BASE COUNT          302 a          204 c          129 g          369 t
ORIGIN      
        1 tttgatttca gattttactt ttaaaaattg aagatctccc cacaattgtt gaccttcttt
       61 tgaaatagaa acttttttgt tataagtatg agccacaggt gtcccaatcc aatattttat
      121 ataatctaga tattgtggag taatccttgt tccaaaatta aatgttttac ctccgtttgt
      181 atgaattgcc acaagcttgt tgcttttaac atcccataca ccactaccac tttgtcctcc
      241 agatgtatca gcatcataat aaactctata tttatccaaa ttcattattt taccagtaga
      301 tcgccacata taatatttta aatcactact gtttgttcga tcggtcttat catcaggata
      361 acctgttgtt gcaattttat cccctaaagc aatagtagat gttatcccca acgagcctgt
      421 taaactacct aaatttgtat ctagttttat agccgctaaa tcatatttac tatctagtgt
      481 actggtataa cctttaagta catacgtttt tatacctttt gcagaacctc gaatgatatt
      541 tccatataac ccactgtata cagttattct ttctgcaatc ttttttcttc cctcatcata
      601 tacaacatga gctgcagtta gcacagtatc tttactaacc attacaccag atgcaacata
      661 tccttcgtaa tttccctctg aattcttcca ttcaactttt atagcgacat tctctttaat
      721 aggagacgaa gtaaatgaag tgactttctt cctttcgtca gtaccgatag cactttcgac
      781 atgaggaaaa aaatctccgt agttatcggt attattaaaa ttaactttac tttgtgttga
      841 tgcttctgta ctaggcattg gtaatatatc tcctggcata gcagaaatat ccgtagcttg
      901 tgactcaata attccatcat cagctatgaa ttcttctgca tttacatatg acggagtata
      961 catactaaga aataatacaa taaaaacaag ttttgttacc tttt
//
LOCUS       DANHOL010000288         1002 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.295, whole genome shotgun sequence.
ACCESSION   DANHOL010000288 DANHOL010000000
VERSION     DANHOL010000288.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 1002)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1002)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1002
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.295"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            90..950
                     /locus_tag="PTC08_002439"
     CDS             90..950
                     /locus_tag="PTC08_002439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002477820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication/maintenance protein RepL"
                     /protein_id="HDK5683887.1"
                     /translation="MAYQCINLEEYQNFNSITEMDHNVKQFNGLLKKTHYETLNLLKQ
                     YSCKVIGVSHIKVQTIAKQLGKSIATIKRHLKYLKDNGFISVINTFRRKSGGKGANAY
                     IINSVEYRNAFLSKNKNEPSEMSHRKTIKNILQSQASQAVQEVEVQKETINSLKLLKS
                     FISTAKRKSKSYFEKIEAIKNYRECPQNVPHNLYMLNRAYFSDKQISVIHNIIHKNIS
                     EFETLLSDSQIHDVYFDTFKSLVKALRRYHKENGQEVRNIYAYAYTASKRQVFKYTSQ
                     NAWNFAPSFM"
BASE COUNT          400 a          158 c          140 g          304 t
ORIGIN      
        1 ataacaatat atttatccta agtgtagccg ttagaagaga aaacggtata cacttttttc
       61 ttttgtctaa aaagagagga taaataatca tggcatatca atgtatcaat ttagaagaat
      121 accaaaactt taattcaatt actgaaatgg atcataatgt aaaacagttt aatggacttc
      181 tcaaaaaaac acactatgaa acattgaact tactaaaaca gtatagctgc aaagttattg
      241 gtgtttctca tattaaagtc caaacaatcg caaaacaatt aggtaaatct atagctacaa
      301 tcaaacgcca tttaaaatat ttaaaagaca atggctttat ctctgtgatt aatacatttc
      361 gtcgaaaatc agggggcaaa ggtgccaatg cttacatcat taattcagta gaatacagaa
      421 atgcattttt atctaaaaat aaaaatgagc catcggaaat gagccatcgg aaaaccataa
      481 aaaacatact tcaaagccaa gcatcacaag cagttcagga agtcgaagtt cagaaagaaa
      541 ctattaattc tttaaaacta ttaaaatctt ttataagtac agcaaagcgt aaatctaaat
      601 cttatttcga aaaaattgaa gcaatcaaaa actatcgtga atgtccgcaa aatgtacctc
      661 ataatttata tatgcttaat cgagcttatt tcagcgataa acaaatctct gtcattcaca
      721 atattataca taaaaacatc agtgagtttg aaactctttt aagtgatagt caaattcatg
      781 atgtttattt cgatacgttt aaatctttag ttaaagcctt aagaagatat cataaagaaa
      841 atggtcaaga ggttcgcaat atctatgctt atgcgtatac agcaagtaag agacaagttt
      901 ttaaatatac ttcacaaaac gcatggaatt tcgctccatc atttatgtga ttgactattg
      961 ttgataagat ctattaactt gcccttattc aaacaagata ac
//
LOCUS       DANHOL010000289          992 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.296, whole genome shotgun sequence.
ACCESSION   DANHOL010000289 DANHOL010000000
VERSION     DANHOL010000289.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 992)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 992)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..992
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.296"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            22..765
                     /locus_tag="PTC08_002440"
     CDS             22..765
                     /locus_tag="PTC08_002440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001830227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphoryl diester phosphodiesterase"
                     /protein_id="HDK5683888.1"
                     /translation="MLTVYGHRGLPSKAPENTIASFKAASEVEGINWLELDVAITKDE
                     QLIIIHDDYLERTTNMSGEITELNYDEIKDASAGSWFGEKFKDEHLPTFDDVVKIANE
                     YNMNLNVELKGITGPNGLALSKSMVKQVEEQLTNLNQNQEVLISSFNVVLVKLAEEIM
                     PQYNRAVIFHTTSFREDWRTLLDYCNAKIVNTEDAKLTKAKVKMVKEAGYELNVWTVN
                     KPARANQLANWGVDGIFTDNADKMVHLSQ"
     gene            862..>992
                     /locus_tag="PTC08_002441"
     CDS             862..>992
                     /locus_tag="PTC08_002441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000872606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683889.1"
                     /translation="MKYDDFIVGETFKTKSLHITEEEIIQFATTFDPQYMHIDKEKA"
BASE COUNT          396 a          132 c          189 g          275 t
ORIGIN      
        1 aaaaatgcaa ggagaggtaa tatgctaact gtatatggac atagaggatt acctagtaaa
       61 gctccggaaa atacaattgc atcatttaaa gctgcttcag aagtagaagg tataaactgg
      121 ttggagttag atgttgcaat tacaaaagat gaacaactga ttatcattca tgatgattat
      181 ttagaacgga ctacaaatat gtccggggaa ataactgaat tgaattatga tgaaattaaa
      241 gatgcttctg caggatcttg gtttggtgaa aaattcaaag atgaacattt gccaactttc
      301 gatgatgtag taaaaatagc aaatgaatat aatatgaatt taaatgtaga attaaaaggt
      361 attactggac cgaatggact agcactttct aaaagtatgg ttaagcaagt ggaagaacaa
      421 ttaacaaact taaatcagaa tcaagaagtg ctcatttcaa gctttaatgt tgtgcttgtt
      481 aaacttgcag aagaaatcat gccacaatat aacagagcag ttatattcca tacaacttcg
      541 tttcgtgaag actggagaac acttttagat tactgtaatg ctaaaatagt aaacactgaa
      601 gatgccaaac ttactaaagc aaaagtaaaa atggtaaaag aagcgggtta tgaattgaac
      661 gtatggactg taaacaaacc agcacgtgca aaccaacttg ctaattgggg agttgatggt
      721 atctttacag acaatgcaga taaaatggtg catttgtctc aatagaaagt tagaggtgag
      781 tcttacgttt cagtgacggt agacttacct ttaacatgtt acatactaaa aaattaattt
      841 gaataagaaa gagagacata tatgaaatac gatgatttta tagtaggaga aacattcaaa
      901 acaaaaagcc ttcatattac agaagaagaa attatccaat ttgcaacaac ttttgatcct
      961 caatatatgc atatagataa agaaaaagca ga
//
LOCUS       DANHOL010000290          971 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.297, whole genome shotgun sequence.
ACCESSION   DANHOL010000290 DANHOL010000000
VERSION     DANHOL010000290.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 971)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 971)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..971
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.297"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            652..>971
                     /locus_tag="PTC08_002442"
     CDS             652..>971
                     /locus_tag="PTC08_002442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683890.1"
                     /translation="MISKNIKLQDSSYESSNTSLTLKLKRIENDEDSKIYYLDAVLEF
                     ENEKAETELAVFDFDIDFLKNLEYSFPVTDIYFTEPDISLTVIDYESDELCIYVNLDS
                     GLKH"
BASE COUNT          361 a          155 c          164 g          291 t
ORIGIN      
        1 aaacttgtaa cataacactg tcagacagta acaaacaatc atatacctta tgtaacttgt
       61 ctctaagccc tttactgttt agcccttgtc ctttgcgtca ctggtgagct ttagctcacc
      121 aggtgacaaa ctgcttggct ataaggctta cctgcaaata ttaatctgct atcattaaca
      181 tttaccctta agatatgaat acaaaaaagc cccccctcaa tataaacctt tcattacgag
      241 tgcgctattc gtaatggatt ggcaaaaagg gaaattatca agagggaaat atgtaaaaga
      301 cttataaatc tttaggagag agtaggtgtg ggaatatgtg tgtgtaatca attaaaatgt
      361 cgacataatt aattacaaga gttcttccag caatcccttt tgtagcttca gctgtttttg
      421 gaattttagc taaacaaggt gtaaaaactt ttgtaaaatc aatatctaaa cacgctttgc
      481 aaagagcagg acaaagaggt attactaagc atatgatggc aaacacctta aaaaatggta
      541 ctaaatacac cgataagaaa acaggagcta ctttagttat caaaggcaac aaagttgtga
      601 caacttataa gcaaaagaaa cctaaaaaag tatggagaaa gggtcattaa tttgatttca
      661 aaaaatataa aactacaaga ttcttcatat gaatcaagta atacttcatt aaccttaaaa
      721 cttaaaagaa tagaaaatga tgaggacagt aagatttatt atttagacgc tgtacttgaa
      781 tttgaaaatg aaaaagctga aacagaatta gctgtttttg acttcgacat tgattttctg
      841 aaaaacttag agtattcatt ccctgtaaca gacatttatt tcacagagcc tgatatatca
      901 ttgacagtca ttgactatga gagtgatgag ctttgtatat acgttaactt agattctgga
      961 ttgaagcata a
//
LOCUS       DANHOL010000291          964 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.298, whole genome shotgun sequence.
ACCESSION   DANHOL010000291 DANHOL010000000
VERSION     DANHOL010000291.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 964)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 964)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..964
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.298"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(<1..917)
                     /locus_tag="PTC08_002443"
     CDS             complement(<1..917)
                     /locus_tag="PTC08_002443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001802837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metalloprotease"
                     /protein_id="HDK5683891.1"
                     /translation="MLYIKYTQNIMSHKIWLLVLVSTLIPLIPFYKISNFTFSKDMMN
                     RNVSDTTSSVSHMLDGQQSSVTKDLAINVNQFETSNITYMILLIWVFGSLLCLFYMIK
                     AFRQIDVIKSSSLESSYLNERLKVCQSKMQFYKKHITISYSSNIDNPMVFGLVKSQIV
                     LPTVVVETMNDKEIEYIILHELSHVKSHDLIFNQLYVVFKMIFWFNPALYISKTMMDN
                     DCEKVCDRNVLKILNRHEHIRYGESILKCSILKSQHINNVAAQYLLGFNSNIKERVKY
                     IALYDSMPKPNRNKRIVAYIVCSISLLIQA"
BASE COUNT          342 a          150 c          133 g          339 t
ORIGIN      
        1 gcttgtatta aaagcgatat actacataca atatacgcaa caatacgctt gtttcgatta
       61 ggtttaggca ttgaatcata aagtgcaata tacttaacac gttctttaat atttgaatta
      121 aaacctagta aatattgtgc tgccacatta tttatgtgct gagattttaa aatagagcat
      181 tttaatatcg attcaccata acgtatatgt tcatggcgat tcaaaatttt taaaacgttt
      241 ctatcacata ctttttcaca gtcattgtcc atcattgttt tacttatata tagtgcagga
      301 ttaaaccaga atatcatttt aaaaacaaca taaagctggt tgaatattaa gtcatgactt
      361 ttcacatgtg atagttcatg tagaataata tattcaattt ctttgtcatt catggtttcg
      421 actacgacag ttggtagtac aatttgggat ttcactaaac caaataccat cggattatca
      481 atgtttgaac tataactaat tgttatatgc tttttgtaga actgcatctt actttgacat
      541 actttaagtc gttcattaag atatgacgat tccaatgacg aacttttaat aacatcaatt
      601 tgtcggaatg ccttaatcat ataaaataag cacaacaaac taccaaatac ccatatcaaa
      661 agaatcatat acgttatatt tgaggtctca aactgattaa cattaattgc taagtctttc
      721 gtaacagatg attgttgacc atctaacata tgactaaccg aagaagtcgt gtcagataca
      781 tttcgattca tcatatcttt tgaaaatgta aaattcgata ttttgtaaaa tggtattaat
      841 ggaattaacg tggagacgag cactaataac caaatcttat gtgacataat attttgagta
      901 tattttatat agagcattct cactaaaaaa attacacata tcgtgagcaa tgaactgatt
      961 atac
//
LOCUS       DANHOL010000292          947 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.299, whole genome shotgun sequence.
ACCESSION   DANHOL010000292 DANHOL010000000
VERSION     DANHOL010000292.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 947)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 947)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..947
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.299"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(634..748)
                     /gene="rrf"
                     /locus_tag="PTC08_002444"
     rRNA            complement(634..748)
                     /gene="rrf"
                     /locus_tag="PTC08_002444"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
     gene            complement(827..>947)
                     /locus_tag="PTC08_002445"
     rRNA            complement(827..>947)
                     /locus_tag="PTC08_002445"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          309 a          184 c          143 g          311 t
ORIGIN      
        1 aatacaatac atctagatgt gtttaaattt tacaataaaa gataaataaa aacaactaaa
       61 attaacaact tataaaaaat ttttataagt tgttcatatt tccgtttatt ttatcatgat
      121 tttttatgaa aacgtacgtg tcaactttgg agtcgcagtc taatattcat tgactgatac
      181 gtttcaaaga ctttgatgat atcaccacaa cctctattac ataggaattt gaagttatca
      241 aattgcatat tttctcttat aatagtttaa tttattccac tgccagtctg taacaatctt
      301 tcactgtcat attgttatac ctagtgggta caccaaaaac cagttgagac gtaattccta
      361 gctaatgcgc taaaaagctc taattagata gcaaaacatt ttctattgat aggtatgagc
      421 gatacatgaa tttgatcatt tgcgaagtca tatgatttta tgtacaaaat cctttcgcac
      481 cacttctaaa acaaagaggt taagcaacac tattttgctt cacctctttg ttttgcgcat
      541 cgtcctattt gacaaagcgc ctcactgcga aaaagagaga atatacaaaa aaagcctcga
      601 aacaataatg attgcttcga agcttttgaa ataacctggc accgtcctac tctcgcggaa
      661 cgtaagtccg actaccatcg gcgctaaaga gcttaacttc tgtgttcggc atgggaacag
      721 gtgtgacctc tttgccattg gcaccagatt aagtttttga atgtcataca ttcaaaacta
      781 gatagtaagt atatttatca caagcattac cttatgaaca attatgttga ttaagtcttc
      841 gatcgattag tattcgtcag ctccacgtat cactacgctt ccacctcgaa cctattcacc
      901 tcatcatctt tgagggatct tataaccgaa gttgggaaat ctcatct
//
LOCUS       DANHOL010000293          943 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.300, whole genome shotgun sequence.
ACCESSION   DANHOL010000293 DANHOL010000000
VERSION     DANHOL010000293.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 943)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 943)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..943
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.300"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            <1..449
                     /locus_tag="PTC08_002446"
     CDS             <1..449
                     /locus_tag="PTC08_002446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683892.1"
                     /translation="EKYQMIEKQLEECQTNKINAQNMKLSYETQDFNRVFQQQRVHFK
                     LKRRKFVESERYHLNIENQSGESVQISMRTFYKNNKGRARIFITIDNMKYDIVDLAYE
                     SVEKSIAPGSKMCIAIQSTKDIDKKSWIEAAKFEIKEIYANKKVIE"
     gene            446..>943
                     /locus_tag="PTC08_002447"
     CDS             446..>943
                     /locus_tag="PTC08_002447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HDK5683893.1"
                     /translation="MRAIIEIFKEQIVNLPKISKLAIYNMKSQYANHYLGIFWNILQP
                     VLQVIIYYIVFGLGLRGSSGLVMGVPFIVHLISGLFPWLFISQGINSGASAIQKNIGL
                     LAKMKFPSSIFISIALTNNMINLLITTTIVFVISVINHYVPWWHYFWFVYFMIGAFSI
                     IFGISL"
BASE COUNT          325 a          133 c          165 g          320 t
ORIGIN      
        1 atgaaaagta tcaaatgatt gaaaaacagc tggaagaatg tcaaacaaat aaaataaatg
       61 cacaaaacat gaaactcagt tatgaaacac aagattttaa tcgtgtattt caacagcaaa
      121 gggtgcattt taaattgaag cgtagaaagt ttgttgagag cgaacgatat catttaaata
      181 ttgagaatca aagtggtgag tcagttcaaa tttcgatgcg tactttttat aaaaataata
      241 aaggcagagc acgtatattt atcactattg ataacatgaa atacgatatc gttgacttag
      301 cgtatgaaag cgttgaaaaa tcaatagcac cgggttcgaa aatgtgcatt gcaatccagt
      361 cgactaagga tatcgataag aagtcttgga tagaagcagc taaatttgaa atcaaagaaa
      421 tttacgcaaa taagaaggtc atagaatgag agcaatcata gaaatattta aagaacaaat
      481 tgtcaattta cctaaaattt ctaaattagc tatctataac atgaaaagtc aatatgccaa
      541 tcattattta ggtatctttt ggaatatttt gcaacccgtt ctccaagtga ttatctacta
      601 tattgttttt ggtcttggat taagaggaag ttccggatta gtgatgggtg tgccatttat
      661 tgttcacttg atttcaggtc tatttccttg gcttttcatt tcccaaggta tcaattctgg
      721 tgcttcagcg attcaaaaaa atattggttt gttagctaag atgaaattcc cgtcttctat
      781 ttttatatct attgcactga cgaacaatat gattaattta ctgattacaa caaccatcgt
      841 ttttgtaatt tctgtgatta accattatgt accatggtgg cattattttt ggttcgttta
      901 ttttatgata ggagcctttt caattatctt tggcatttct tta
//
LOCUS       DANHOL010000294          887 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.301, whole genome shotgun sequence.
ACCESSION   DANHOL010000294 DANHOL010000000
VERSION     DANHOL010000294.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 887)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 887)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..887
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.301"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(15..>887)
                     /locus_tag="PTC08_002448"
     CDS             complement(15..>887)
                     /locus_tag="PTC08_002448"
                     /inference="COORDINATES: protein motif:HMM:NF019310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDK5683894.1"
                     /translation="KILNENQLIDGNAYFSIAYQGSDALFNALAGIVITAFGLFSIYV
                     IDSVTFLINGVMFIFLSRQIYLINRHKTVEKSGYLKMHFQTLCSGLALWKGKLFFPLL
                     IGVIVINFSVTGIFANLPFYALGELHYSLLMSSSGIGILAGSLIVKGKWMRSVPLGVF
                     YILGIALIGVSWILFSLLKHESTFIMIVSFVLFLTGWVVVGMFNIISQTIIQLSVSEE
                     QLGMAMGTMIGVSTSIAPLGALLGGSLGVLFGSHTVMILFASLLVFVSVFWMSQSSIR
                     ELTDFEHIEWGRQD"
BASE COUNT          349 a          194 c          101 g          243 t
ORIGIN      
        1 ttttaagttt tccattagtc ttgtctcccc cactctatat gttcgaaatc agtcaattct
       61 ctaattgaag attgggacat ccaaaatacc gacacaaaca ctaataagct tgcaaacaat
      121 atcattaccg tgtgactccc aaataaaaca cctaaactcc cacctaataa cgcaccgaga
      181 ggagctattg atgtggagac cccaatcatt gttcccatcg ccattcctag ttgttcttca
      241 ctaacagata attgaataat ggtctgagaa ataatattaa acatacccac aacaacccaa
      301 cccgttaaaa ataaaacaaa tgagacaatc attataaaag tgctttcatg cttaagtaac
      361 gaaaataaaa tccaagaaac accgataagt gcaatgccta ggatataaaa cacacctaaa
      421 ggaacactcc tcatccactt tccttttaca attagagatc ccgctaaaat cccaattcca
      481 gaactagaca ttaaaaggct ataatgcagt tctcctaatg cataaaacgg taaatttgca
      541 aaaataccag ttactgaaaa attaataaca atgacaccta ttagtaaggg gaaaaataat
      601 tttcctttcc ataaagctaa cccagaacaa agcgtttgaa aatgcatttt caaataccca
      661 ctcttttcta cagtcttatg ccgatttatt aaataaattt gtcggctcaa aaatataaac
      721 atcacaccat taatcaaaaa agtaacacta tcaataacat aaatagaaaa caatccaaat
      781 gcagtaatca ctattcctgc taacgcattg aataacgcat cactaccttg atatgcaata
      841 ctaaaatagg cattaccatc aattaattga ttttcattta aaatttt
//
LOCUS       DANHOL010000295          881 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.302, whole genome shotgun sequence.
ACCESSION   DANHOL010000295 DANHOL010000000
VERSION     DANHOL010000295.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 881)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 881)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..881
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.302"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(<1..866)
                     /locus_tag="PTC08_002449"
     CDS             complement(<1..866)
                     /locus_tag="PTC08_002449"
                     /inference="COORDINATES: protein motif:HMM:NF017760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDK5683895.1"
                     /translation="MTSQIFKLISNDFVVGLGNSIFSLVMMWYVLNQTGSAYYTATIG
                     SLSHIAQILVGSYAGIKADQMNQPVKMMVYSLRFNGIFLLIIGFVVLILDFNLYLLIV
                     LLFLREVTMVFQLPNQNKLIPRLVQAQEDVKRILSYRSLTKNLSMMLGFAIAGFLFSA
                     VPFFILILLIMVLFIIGSSAINTIKVTNKMHTFKSKRKKQKSLDEFKVVLNMILKDYY
                     LKRVMITAMMLNIISMVAPTFVVYFNQYLHAQPKDYGMFQFFIALGSILAASIGLKLK
                     HKMSSYNILVTF"
BASE COUNT          330 a          156 c          122 g          273 t
ORIGIN      
        1 caaaaagtga ctaaaatgtt ataagaagac atcttatgct ttaattttaa tcctattgaa
       61 gctgcgagta tacttcctaa agcgataaaa aactgaaaca taccataatc tttaggttgc
      121 gcatgtaaat attgattaaa atagaccaca aatgtcgggg cgaccatact aataatattc
      181 aacatcatcg cagtaatcat tacacgtttt aagtagtaat cttttaaaat catattgaga
      241 actactttga attcgtccag agatttctgc ttttttcgtt ttgatttgaa cgtatgcatc
      301 ttgtttgtca cctttatagt attaattgca cttgaaccga tgataaacag caccatgatc
      361 aatagaatta atataaaaaa agggactgca gaaaataaaa atcccgctat cgcaaaacct
      421 aacatcatgg atagattctt tgttaaactt ctataactca aaatacgctt tacatcttct
      481 tgagcctgta ctaaacgcgg aattaatttg ttttgatttg gcagttgaaa aaccatcgtc
      541 acttctctca aaaacaataa aacaatcaat aaataaagat tgaaatcaag tatcaagaca
      601 acaaaaccaa taattaaaag aaatatgcca ttaaaacgaa ggctatagac catcattttt
      661 acaggttgat tcatttgatc tgctttaatt cctgcataag agccaactaa tatttgagca
      721 atatgtgata aagagccaat tgttgctgta tagtacgccg agccagtttg attgagtaca
      781 taccacatca tcaccagact aaaaatactg ttccccaaac ctacaacaaa atcatttgaa
      841 attaatttaa aaatttgcga tgtcatgctg atattttaac c
//
LOCUS       DANHOL010000296          880 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.303, whole genome shotgun sequence.
ACCESSION   DANHOL010000296 DANHOL010000000
VERSION     DANHOL010000296.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 880)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 880)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..880
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.303"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            618..>880
                     /locus_tag="PTC08_002450"
     CDS             618..>880
                     /locus_tag="PTC08_002450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008591914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HDK5683896.1"
                     /translation="MEAITSNKLTKKYGSKKVVDEVSLSITKGTIFGFLGKNGAGKST
                     FINMITGLCRPTSGEYKLNCEDLYKKVGVLPDYSSMYGDLTGK"
BASE COUNT          304 a          111 c          143 g          322 t
ORIGIN      
        1 ttttcagggg tgagcttagg tttatctaag ctagtcagta atttttacga acctataaaa
       61 tctttaggta tagatggtgc accttatgca atagcaatag tttttatgac tattttaata
      121 agtccattct ttatctttac actttctcac aatactataa atgaggaaat aagaagtagc
      181 accgtgagat ttatcgctac taaaacgaga agaatcaata ttgtaatggg gaaattttta
      241 ggattaatgt tattttggtg tgtcacacta tttatttcaa gcttgataag tatagtgtac
      301 tctcatcatt tttatatact tgaattgata atatcgctaa tctttattag ttactatttg
      361 tctttatcta ttttcatatc tacttttatt actaacacaa cacttactaa tttcttagga
      421 atagcacttt ctctaattat gacaatatta ggtgtatgga gtgtagcatc tagtaatact
      481 ttattaaaaa tttatagtta tacaactccc taccactact attttagtac gaataggtat
      541 ctaactacga ttgtactaat atttacatca atgtttttaa tagcaagtat aattaaattt
      601 caagcgaggg atttataatg gaggcaatta catctaataa attaactaag aaatatgggt
      661 caaaaaaagt agtagatgaa gtaagtttga gtataactaa aggaacgata tttgggttct
      721 taggaaagaa tggagctgga aaatctactt ttattaatat gataacagga ctatgtagac
      781 ctacttcagg tgaatataaa ttaaattgtg aggatttata taaaaaagtg ggggtactgc
      841 cagactattc atctatgtat ggtgatctta ctggtaaaga
//
LOCUS       DANHOL010000297          874 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.304, whole genome shotgun sequence.
ACCESSION   DANHOL010000297 DANHOL010000000
VERSION     DANHOL010000297.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 874)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 874)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..874
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.304"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(<1..798)
                     /locus_tag="PTC08_002451"
     CDS             complement(<1..798)
                     /locus_tag="PTC08_002451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HDK5683897.1"
                     /translation="MKNKVKNVSYLITSKGISKIGDILFDFANNTFLASLNPTSLSMV
                     AIYQSLESVIGVLFNLYGGVIADNFKRKKIIIGTNVLSGIACMVLSFITQEQWLVYAI
                     VITNVFLALMSAFSAPSYKAFTKEIVKKDYITKLNSYLETTSTLIKVTVPMVAIFLYN
                     ILGIHGVLLLDGFSFLIAALLIFLIVPINEEVSSKEKMTISGIFNDLKIGFRYVYSHK
                     PILMIITLSAFVNFFLAAYNLLLPYSNQMFLEISSGLYGTFLTAEAIG"
BASE COUNT          319 a          166 c          117 g          272 t
ORIGIN      
        1 accaattgcc tccgccgtta gaaatgtccc ataaagtcca gatgaaattt ctaaaaacat
       61 ttgattacta tacggtaaca ataaattata ggctgctaga aaaaaattaa caaaagcaga
      121 tagagtgata atcatcaaga ttggcttgtg gctataaaca tacctaaacc ctatttttaa
      181 atcattaaag attccactta ttgtcatctt ctccttactt gacacctctt cattaatagg
      241 tacaataagg aaaatcagta acgcagcaat taaaaatgag aatccatcca ataataatac
      301 accatgtatg cccagtatat tatataagaa aattgcgacc atagggaccg taacttttat
      361 aagtgtacta gttgtttcca aataggaatt tagcttcgtt atataatctt tcttcacaat
      421 ttctttcgta aatgccttat atgacggcgc agaaaaagca ctcattaaag ccaagaatac
      481 atttgttata actatcgcat aaaccaacca ttgttcttgg gttatgaacg aaaggaccat
      541 acaagctatg ccacttaaga cattagttcc aataataatt tttttacgtt taaagttatc
      601 agcaataacc ccaccataca aattaaatag aacacctatc acactttcta atgattggta
      661 gatggcgacc atcgataaag atgttggatt aaggctagca agaaacgtat tgttagcaaa
      721 gtcaaataaa atatctccaa tttttgatat ccctttactc gtgataagat aacttacatt
      781 cttaacctta tttttcatca acattacccc atttaatctt ttgtcagatc agccattacc
      841 aaagtctaat aggtgtaata atttatgcca agca
//
LOCUS       DANHOL010000298          870 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.305, whole genome shotgun sequence.
ACCESSION   DANHOL010000298 DANHOL010000000
VERSION     DANHOL010000298.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 870)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 870)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..870
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.305"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            <1..236
                     /locus_tag="PTC08_002452"
     CDS             <1..236
                     /locus_tag="PTC08_002452"
                     /inference="COORDINATES: protein motif:HMM:NF024424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF3884 family protein"
                     /protein_id="HDK5683898.1"
                     /translation="IYIVDFSLLDRVPLFKDEFKVIGTWYSYSGKRWICHTELSTEQF
                     KKMITKNIDHKDLKKVKFYLDYLPFSITNEIPF"
     gene            308..490
                     /locus_tag="PTC08_002453"
     CDS             308..490
                     /locus_tag="PTC08_002453"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683899.1"
                     /translation="MKNIDKFKVISNEVLKDLSGGMSRCKWAQIACINDSMLVRFGTS
                     DPESACDYMKKICKDE"
     gene            615..>870
                     /locus_tag="PTC08_002454"
     CDS             615..>870
                     /locus_tag="PTC08_002454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter ATP-binding protein"
                     /protein_id="HDK5683900.1"
                     /translation="MKFSKRFYRAQVDSQDCGAAALAMILEFYGSHYSLDFLRRKLRT
                     TVNGTTAYGLVQVADKLGFETVPIKADISLFEIDDVQYPFI"
BASE COUNT          301 a           94 c          175 g          300 t
ORIGIN      
        1 gtatttatat agttgatttt agtcttttag atagggttcc tctatttaaa gatgaattta
       61 aagtaatagg aacttggtat agctatagtg gtaagcgttg gatatgccat acggaattat
      121 caaccgagca attcaagaaa atgataacaa aaaatataga ccataaagat ttaaaaaaag
      181 tcaaatttta tttggattat ctcccatttt ctataactaa cgagattccg ttttgaaaat
      241 aaattatata tttaatgaat taatttttaa tattattatt aaattgtttt gtttaggagg
      301 aatagatatg aaaaatattg ataaatttaa agtgatatca aatgaggtac tgaaagactt
      361 aagtggtggg atgtcccgtt gtaaatgggc tcagattgca tgtataaacg acagtatgtt
      421 ggttagattc ggtacatctg atccagagag tgcatgtgat tatatgaaaa aaatatgtaa
      481 agatgaataa ccattaaagc ttttaataat aggattgaat tttgacatga tattaagtgg
      541 gtgggaatta ccgcccgctt tttgaatatt taaatgttgt tctaaaaagt ggtgggaagg
      601 agtagaagtg tcgaatgaaa ttttcaaaac gattttatcg tgcacaagta gattctcaag
      661 attgtggcgc ggcagcgctc gctatgatat tagaatttta cggttctcac tattctttgg
      721 attttctgag aagaaagtta agaacaacag taaatggcac tacagcatat ggtttggttc
      781 aggtagcaga taagttaggt tttgagacag ttcctattaa agcagatata tctttgtttg
      841 aaattgatga tgtacagtat ccttttatcg
//
LOCUS       DANHOL010000299          870 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.306, whole genome shotgun sequence.
ACCESSION   DANHOL010000299 DANHOL010000000
VERSION     DANHOL010000299.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 870)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 870)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..870
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.306"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(<1..105)
                     /locus_tag="PTC08_002455"
     CDS             complement(<1..105)
                     /locus_tag="PTC08_002455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase P family N-terminal
                     domain-containing protein"
                     /protein_id="HDK5683901.1"
                     /translation="MKNRLQKIRTLLQDKHLDGLTVLSDFNRRYLSGFT"
     gene            200..799
                     /locus_tag="PTC08_002456"
     CDS             200..799
                     /locus_tag="PTC08_002456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683902.1"
                     /translation="MKKRICASISVAFLLSACGSQNLLPLEKRSTDLSDKNHEIKLEN
                     QQLKNENAKKQKQVDALKKDSENTKQAKSNQKKADYLEISSQYYASVTDAINAYQQID
                     SKVLANKKEDKVLDQLDQIIEDHESAMESYQDATEDEKIVKKDKSVKAQDKEIKKLQK
                     EINSALTMIRKGYKAKDKNEIQKGRQSLSNINVKTTNAG"
BASE COUNT          371 a          116 c          153 g          230 t
ORIGIN      
        1 tgtaaaccct gataaatagc ggcgattaaa gtcagataac acagttaaac catcgagatg
       61 tttgtcttgt aataaagttc ttatcttttg aagtctattt ttcatacaaa aattcctcct
      121 tatatttgta cttaattaca tgatacctta aaatgtagtc atatgtagtg aaaaacaatt
      181 gagtgtttag gagtttaata tgaaaaagag aatttgtgcg agtatcagtg ttgcattttt
      241 attgtcagcc tgtggaagtc aaaacctgtt acctctagaa aagagaagta cggatttaag
      301 tgacaaaaat catgaaatta aattagaaaa tcagcaactt aaaaatgaaa atgcgaaaaa
      361 acaaaaacaa gtggacgctt tgaaaaaaga ctcagagaat acaaaacaag cgaagtctaa
      421 tcagaaaaaa gcagattatc ttgaaatttc atcacaatat tatgcctctg taacggatgc
      481 gattaatgcc taccaacaaa ttgattcgaa agtgttagca aacaaaaaag aggataaagt
      541 gttggatcaa ttagatcaaa ttattgagga tcatgaaagt gcgatggaaa gttaccaaga
      601 tgccacggaa gatgaaaaga ttgttaaaaa ggataaatca gtcaaagcac aggacaaaga
      661 aattaaaaaa ctacaaaaag aaatcaacag tgctttaaca atgattcgaa aaggttataa
      721 agcgaaagat aaaaatgaaa ttcaaaaagg acgtcagagc ttatcaaaca tcaatgtgaa
      781 aactacaaat gcaggataat ataaagagga gtaattaaca tgacaacttt ccaaaaaatg
      841 atattcggtg taataatttt tgtcgcacta
//
LOCUS       DANHOL010000300          864 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.307, whole genome shotgun sequence.
ACCESSION   DANHOL010000300 DANHOL010000000
VERSION     DANHOL010000300.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 864)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 864)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..864
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.307"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(<1..>864)
                     /locus_tag="PTC08_002457"
     CDS             complement(<1..>864)
                     /locus_tag="PTC08_002457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF418 domain-containing protein"
                     /protein_id="HDK5683903.1"
                     /translation="VNTGAFHFIKIFIEGSFMPIFAILFGFSLDKMYQSMKRKNIKRP
                     RIKLYRRAFLLFVIGTIHTIWIWEGDILSGYALSMMLLIPFISLTKSFFKWGTVLVAI
                     TFIIMVVFSFFDDTDIPHDTHKEETFVQETKDLYQQGSYSEIISESPDNSDPYFEQLK
                     AVFGVSPGILLLCVIIFESLVFGIGIYLSKSGWFEMDANDFWSNKLFVYLTPVVLLLK
                     SSYLWFDNENITGTFNFVFGLFLALCYIALFKYLYQKYTQHIIFRSLESLGKMSLTFY
                     ITQSIIGVLIFY"
BASE COUNT          331 a          164 c          120 g          249 t
ORIGIN      
        1 ataaaatatc aatacaccga taatactttg cgtaatataa aacgtgaggg acatcttccc
       61 taaactttct aaactacgga aaataatatg ctgtgtgtac ttttgataga gatatttaaa
      121 aagtgctata taacataatg ctaggaaaag gccgaaaaca aaattaaacg tacctgtaat
      181 attttcatta tcaaaccata aataacttga tttgagcaat aaaactactg gcgttaggta
      241 gacaaacaat ttgttcgacc aaaaatcatt cgcatccatt tcaaaccaac cgcttttcga
      301 taaatagata ccaataccaa aaaccaaact ttcaaaaata atcacgcata aaaggagaat
      361 acccggagaa accccaaata ccgcttttaa ttgttcaaaa tatggatcac tgttatctgg
      421 tgactcacta atgatttcgc tgtaacttcc ttgttgatac aaatctttcg tttcttgaac
      481 aaaagtttct tccttatgcg tatcatgcgg tatatctgtg tcatcgaaaa atgaaaatac
      541 aaccatgatg atgaacgtga tcgcaacaag aactgttccc cacttaaaga agcttttagt
      601 aagtgaaata aaaggaatga gcaacatcat agaaagcgca taaccactta aaatgtcacc
      661 ttcccatatc catatcgtat gaattgtacc aattacaaac aggagaaaag ctcttcgata
      721 aagcttaatt ctcggacgtt ttatattttt acgtttcatc gattgataca ttttgtccaa
      781 tgaaaaaccg aacaatatcg caaatatagg cataaaacta ccttcaatga atattttaat
      841 aaaatgaaaa gcacccgtat tcac
//
LOCUS       DANHOL010000301          863 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.308, whole genome shotgun sequence.
ACCESSION   DANHOL010000301 DANHOL010000000
VERSION     DANHOL010000301.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 863)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 863)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..863
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.308"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            <1..>863
                     /locus_tag="PTC08_002458"
     CDS             <1..>863
                     /locus_tag="PTC08_002458"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683904.1"
                     /translation="EGMSTLIPEYLKNNRNDNGFEELFPIVANNIANKLLPNDILEIE
                     PRLGHHFPDVDLILNGLKYGIELKSRSNGAWSTNGNSVLESITNDDYEEIYLFFGTKI
                     PDEQRLLVKFAPYWQTTKSIKVTHSPRFIIDISETQTSIFKKKEDYDRLRNLDEKGKV
                     RFLQEYLKSNTDGTKWYITPDEPNLPLNFSELSRKKRDELRAELFLLFPSDFLGRNKG
                     DYTRATLHLIKHHYVYSTSLRDKFSASGKFEHNGYRFPRVYSSIKEISLEIVKIINEA
                     SEDFISLLYTT"
BASE COUNT          316 a          125 c          150 g          272 t
ORIGIN      
        1 gaaggaatga gtactcttat accagagtat ttaaaaaaca atcgtaacga taatggcttt
       61 gaagagttat tccctattgt tgcaaataat attgctaata agttattgcc gaatgatatt
      121 cttgaaattg aacctcgatt aggccaccat tttcctgatg ttgatttaat cctgaatggg
      181 ttaaaatatg gaatagagtt gaaatcacgc agtaatggtg cttggtcaac aaatggaaat
      241 tctgtgttgg aatcaataac aaatgatgat tacgaagaaa tatatctgtt ttttggaaca
      301 aaaatacctg atgagcaaag attattagtg aaattcgctc cttattggca gacaacaaaa
      361 tctatcaaag ttacgcacag cccaagattt attattgata ttagtgaaac ccaaacctca
      421 atttttaaga aaaaagaaga ttatgataga cttagaaact tagatgaaaa aggtaaagtt
      481 cgtttcttac aagaatattt aaaaagtaat acagatggta ccaaatggta tataactcca
      541 gacgaaccta atttgccatt gaattttagt gaattatcta gaaaaaagag agatgaatta
      601 agagctgaac tatttctgtt gttcccgtca gacttcttag gaagaaataa gggggattat
      661 accagagcaa ctctgcatct cattaaacat cactatgtct attcaacctc ccttagagat
      721 aaattttctg ctagtggtaa atttgagcat aacggttatc gttttccacg tgtatactct
      781 agtattaaag aaataagctt agaaattgtt aaaattatca atgaagccag tgaagacttt
      841 atttcgttgt tatatactac atg
//
LOCUS       DANHOL010000302          840 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.309, whole genome shotgun sequence.
ACCESSION   DANHOL010000302 DANHOL010000000
VERSION     DANHOL010000302.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 840)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 840)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..840
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.309"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            138..>840
                     /locus_tag="PTC08_002459"
     CDS             138..>840
                     /locus_tag="PTC08_002459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683905.1"
                     /translation="MKRLAFALFAFLLLLAGCGDKDSKKEEQSSTQNDKTEKTAKQQE
                     KTLENNKKEVADTTNESQQTENKGIDKDTKNNQQETKQKNVQNQSTDKQANVSHSPSH
                     ETKKDLNEASRIALVFFGNDIQHYTITKSEILKGQYEYQGAGMTTTKNVNQLTLIHQR
                     DIPNAPSGMKFYTLDPPKGNFATIIGVNQNKVFVGGTQGALVDYQDLLTTGKEMNLQS
                     LYEAYKNDPAYTSILN"
BASE COUNT          352 a          118 c          145 g          225 t
ORIGIN      
        1 ctaaagtgtt ttgctataaa atatgtatat ttactacata tatttttcta taagtctatg
       61 gacctattgt gtatagaaaa atatttgata tatttataag tagatagtaa aaaatgtact
      121 taaatgaggt gttgaatatg aaaagattag cttttgcgct ctttgctttt ttacttttat
      181 tagctggttg tggggataaa gattcaaaaa aagaagaaca atcatcgaca caaaatgata
      241 agacagaaaa aacggcaaaa caacaagaaa aaacgttaga gaataataag aaagaagtgg
      301 cagacacaac caatgagtca cagcaaacag aaaataaagg aatcgataaa gatactaaaa
      361 acaatcagca agagacaaaa cagaagaatg tacaaaatca aagcactgat aaacaagcta
      421 atgtgagtca ttcaccttct catgagacaa agaaagattt gaacgaagca tctagaattg
      481 cactcgtatt ttttggcaat gatatccaac actatacaat aacgaagtca gaaattctaa
      541 aaggtcaata tgaatatcaa ggtgctggga tgaccactac aaagaatgtt aatcaattaa
      601 cattaatcca tcaaagagac atacctaacg cgccatcagg tatgaagttt tatactttag
      661 atcctccaaa aggaaatttt gcgacaatta ttggtgtaaa tcaaaacaaa gtatttgtag
      721 gtgggacaca aggtgcgttg gtagattacc aagatttgct cactacaggt aaagaaatga
      781 atttacaaag tttgtacgaa gcatataaaa atgatccagc atatacgagt attctaaata
//
LOCUS       DANHOL010000303          827 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.310, whole genome shotgun sequence.
ACCESSION   DANHOL010000303 DANHOL010000000
VERSION     DANHOL010000303.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 827)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 827)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..827
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.310"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(86..161)
                     /locus_tag="PTC08_002460"
     tRNA            complement(86..161)
                     /locus_tag="PTC08_002460"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(126..128),aa:Ala,seq:tgc)
     gene            complement(179..252)
                     /locus_tag="PTC08_002461"
     tRNA            complement(179..252)
                     /locus_tag="PTC08_002461"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(216..218),aa:Pro,seq:tgg)
     gene            complement(262..338)
                     /locus_tag="PTC08_002462"
     tRNA            complement(262..338)
                     /locus_tag="PTC08_002462"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(302..304),aa:Arg,seq:acg)
     gene            complement(350..438)
                     /locus_tag="PTC08_002463"
     tRNA            complement(350..438)
                     /locus_tag="PTC08_002463"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(402..404),aa:Leu,seq:taa)
     gene            complement(447..521)
                     /locus_tag="PTC08_002464"
     tRNA            complement(447..521)
                     /locus_tag="PTC08_002464"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(487..489),aa:Gly,seq:gcc)
     gene            complement(537..612)
                     /locus_tag="PTC08_002465"
     tRNA            complement(537..612)
                     /locus_tag="PTC08_002465"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(577..579),aa:Lys,seq:ttt)
     gene            complement(619..694)
                     /locus_tag="PTC08_002466"
     tRNA            complement(619..694)
                     /locus_tag="PTC08_002466"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(659..661),aa:Thr,seq:tgt)
     gene            complement(697..772)
                     /locus_tag="PTC08_002467"
     tRNA            complement(697..772)
                     /locus_tag="PTC08_002467"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(737..739),aa:Val,seq:tac)
BASE COUNT          219 a          219 c          191 g          198 t
ORIGIN      
        1 gaaagtactt ttgaagtact caaattattg gaattaacgt tgacatattg tcattcagtt
       61 ttcaatgttc atttcaaata tataatggtg gagactagcg ggatcgaacc gctgacctcc
      121 tgcgtgcaaa gcaggcgctc tcccagctga gctaagcccc catgttattt tacagaagtc
      181 gggaagacag gatttgaacc tgcgacccct tggtcccaaa ccaagtgctc taccaagctg
      241 agctacttcc cgttattaag atggcgcgcc cgataggagt cgaacccata accttttgat
      301 ccgtagtcaa acgctctatc caattgagct acgggcgcat aattaaagat ggtgccgagg
      361 accggaatcg aaccggtacg gtgatctctc accgcaggat tttaagtcct gtgcgtctgc
      421 cagttccgcc accccggcaa aaataatgga gcagaagacg ggattcgaac ccgcgacccc
      481 gaccttggca aggtcgtatt ctaccgctga actacttctg ctcaatagta ttcgaatggt
      541 gagccataga ggattcgaac ctctgaccct ctgattaaaa gtcagatgct ctaccaactg
      601 agctaatggc tcataaaatg gtgccggcca gaggacttga acccccaacc tactgattac
      661 aagtcagttg ctctaccaat tgagctaggc cggcaatggt ggagaatgac gggatcgaac
      721 cgccgaccct ctgcttgtaa ggcagatgct ctcccagctg agctaattct ccatatgtaa
      781 tgcctggcaa cgtcctactc tcgcggaacg taagtccgac taccatc
//
LOCUS       DANHOL010000304          809 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.311, whole genome shotgun sequence.
ACCESSION   DANHOL010000304 DANHOL010000000
VERSION     DANHOL010000304.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 809)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 809)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..809
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.311"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            <1..>809
                     /locus_tag="PTC08_002468"
     rRNA            <1..>809
                     /locus_tag="PTC08_002468"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          243 a          156 c          231 g          179 t
ORIGIN      
        1 cgaaaacgaa ttctctcttg agtggatcct gagtacgacg gagcacgtga aattccgtcg
       61 gaatctggga ggaccatctc ctaaggctaa atactctcta gtgaccgata gtgaaccagt
      121 accgtgaggg aaaggtgaaa agtaccccgg aaggggagtg aaagagaact tgaaaccgtg
      181 tgcttacaag tagtcagagc ccgttaatgg gtgatggcgt gccttttgta gaatgaaccg
      241 gcgagttacg atctgatgca aggttaagca gaaaatgtgg agccgtagcg aaagcgagtc
      301 tgaatagggc gaatgagtat ttggtcgtag acccgaaacc aggtgatcta cccttggtca
      361 ggttgaagtt caggtaacac tgaatggagg accgaaccga cttacgttga aaagtgagcg
      421 gatgaactga gggtagcgga gaaattccaa tcgaacttgg agatagctgg ttctctccga
      481 aatagcttta gggctagcct caagtgatga ttattggagg tagagcactg tttggacgag
      541 gggcccctct cgggttaccg aattcagaca aactccgaat gccaaataat ttaacttggg
      601 agtcagaatg tgggtgataa ggtccatatt cgaaagggaa acagcccaga ccaccagcta
      661 aggtcccaaa atatatgtta agtggaaaag gatgtggcgt tgcccagaca actaggatgt
      721 tggcttagaa gcagccatca tttaaagagt gcgtaatagc tcactagtcg agtgacactg
      781 cgccgaaaat gtaccggggc taaacatat
//
LOCUS       DANHOL010000305          790 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.312, whole genome shotgun sequence.
ACCESSION   DANHOL010000305 DANHOL010000000
VERSION     DANHOL010000305.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 790)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 790)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..790
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.312"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(368..>790)
                     /locus_tag="PTC08_002469"
     CDS             complement(368..>790)
                     /locus_tag="PTC08_002469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HDK5683906.1"
                     /translation="QYDIVGEYDIHLPEKTSVVDQKYVYQDDHNQWFQTLPQPQKEKF
                     LHLLYQLGVEKKKFTARQTEGWSDGEKKKVLIAHSLIQQNSLLMWDEVTNSLDFYVVD
                     QLIDMLANARPTMIGIDHNAHFVETIASKTIQLVRDEE"
BASE COUNT          230 a          165 c          128 g          267 t
ORIGIN      
        1 tatccatttt ttaaatctta caattgccat cctgggcttg ctttcctagg ggacttgcct
       61 caactaaatt cggcaggatt gaagtacaca tttgtaagaa gccgaattgg attttcggct
      121 gcgtctgatc cctcaggagt ctcccccatt ttagcaattg aatatcgaat attgtgaatc
      181 aatgatggtc aaacatttga ttatgaagag aacgaaaatt atcaaaaatt ttaatcctgt
      241 atcatctgac ttgattttat ggttcaatat aactgttttc aattttcata gcaaagcaga
      301 aaaaatagta atgttccatt ctcatagact atccccctgt tttcaaaaag aatagaggcc
      361 tatctcccta ttcttcatca cgtaccaatt gaatggtttt agaagcgatt gtttctacaa
      421 aatgtgcatt atgatcaatc ccaatcatgg tcggtcgcgc attggccaac atgtcaatca
      481 gttggtccac aacataaaag tctaaggaat tggtcacttc atcccacatc aacaaactgt
      541 tttgctgaat tagcgaatgc gcaatcaaca cttttttctt ttcaccatca ctccagcctt
      601 ccgtttgtcg tgccgtgaat tttttctttt cgactcctaa ttgataaagt aaatgtagaa
      661 acttctcctt ttgaggttgt ggcaaagttt gaaaccattg attgtgatca tcttgataca
      721 catatttttg atcgaccact gacgtctttt caggtaaatg aatgtcatac tctcccacaa
      781 tatcatactg
//
LOCUS       DANHOL010000306          783 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.313, whole genome shotgun sequence.
ACCESSION   DANHOL010000306 DANHOL010000000
VERSION     DANHOL010000306.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 783)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 783)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..783
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.313"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            13..375
                     /locus_tag="PTC08_002470"
     CDS             13..375
                     /locus_tag="PTC08_002470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="regulator"
                     /protein_id="HDK5683907.1"
                     /translation="MNNHFDMETEAIFFYESNRKKIISELKKQHGLKLNDILFLYHLK
                     TTNSRRISLHKVKQSIDFSLMEIHKSLTALTEKNIIGKERSTEDERKVFITIDDAQAE
                     NMQQLLDNFNQIQKDILQ"
BASE COUNT          293 a          143 c          113 g          234 t
ORIGIN      
        1 aggagtgaaa ttatgaacaa ccattttgat atggagacag aagctatctt cttttacgaa
       61 tcaaatagaa agaaaattat cagtgaactt aagaaacaac atggcctaaa actgaatgac
      121 attttgtttt tatatcacct taaaacgaca aatagtcgtc gtatttcatt acacaaagtc
      181 aaacaatcaa ttgattttag tttaatggag atacataaat cgttaacggc cttaacagaa
      241 aaaaatatca ttggtaaaga acgttctaca gaagatgaac gaaaagtttt cattacaatt
      301 gatgatgcac aagcagaaaa tatgcaacaa ctacttgata acttcaatca aattcaaaaa
      361 gacattttac aataattggc taaccttgaa ttggtaaact ccaaattaca gatatcattc
      421 cggtgatatc tgtaatttta taagacaggg tttgaattgg tatccgtagt atatcacgat
      481 ataaccactg caattttaac gcaataatca ccttgtacta tttaaacaaa cgaatcagtt
      541 gcgcctgtaa ttgaaaagct tgatttcaga ctaactcgaa cctccacctt agactaagat
      601 gacacacctt tagcaatgac tttccaatgg cttgagcctc tttgcatgtt ctacgctaca
      661 acgagccccc tatcaaaatg cacaaaatta gacattaatg aataattaac atatgattaa
      721 gattaactat accctttcat ctgttgaccc catatgcgat tagcgtaatt cgcgttttaa
      781 act
//
LOCUS       DANHOL010000307          778 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.314, whole genome shotgun sequence.
ACCESSION   DANHOL010000307 DANHOL010000000
VERSION     DANHOL010000307.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 778)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 778)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..778
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.314"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            57..237
                     /locus_tag="PTC08_002471"
                     /pseudo
     CDS             57..237
                     /locus_tag="PTC08_002471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613246.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            394..483
                     /gene="rpsI"
                     /locus_tag="PTC08_002472"
     CDS             394..483
                     /gene="rpsI"
                     /locus_tag="PTC08_002472"
                     /inference="COORDINATES: protein motif:HMM:NF012598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HDK5683908.1"
                     /translation="MQLYETLKFFERKKPGLTKARRSPQFSKR"
BASE COUNT          285 a          110 c          146 g          237 t
ORIGIN      
        1 gagtagtatt atttaataag aattacaagt taaataaaat acctacaaat caaaagttga
       61 cagagattgt agaatttcta tcagatggta agttagcaag tagaatagaa attcaagaaa
      121 caatgggtct tcaaaagagt tatacgtctg acttaattgc ggaactgaag aaaataaaga
      181 ttatcggttc tgaagggtag aagcctaggt actagaaatt atttatatag aggctaataa
      241 atttatccag tgataaccag acgataatcg aacgatacaa gagtatttac caccggccag
      301 cagtttattt agttacccct aagtataatt tggtttaatt ctatgcaatc gaaaagaatt
      361 agaaatcctt tatttcaagg cttacgatag tttatgcaac tatacgaaac cctaaagttt
      421 tttgaacgta aaaaaccagg tcttacaaaa gcccgtcgtt cacctcaatt ctcaaaacgt
      481 taatatcgat tatatattat gtttcaagac atcttctcat tgcgggaagg tgtcttttta
      541 gtttggcatt gtgcgataaa tggcaatgaa gaatagaaac gcgactacgc cttgaatatg
      601 gtagacaata ataagtatgt tcaaaggcgt gtgaaattaa ggcgttgatc gtgtattgga
      661 tcataagcct ctgtgattac tattttacaa cgatttaatg aagtgaaatg caaataattt
      721 aatgagttgc atgtcaatca taagtactgg atacgtgtgc atacaatgta aaaatagg
//
LOCUS       DANHOL010000308          773 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.315, whole genome shotgun sequence.
ACCESSION   DANHOL010000308 DANHOL010000000
VERSION     DANHOL010000308.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 773)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 773)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..773
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.315"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(<1..>773)
                     /locus_tag="PTC08_002473"
     CDS             complement(<1..>773)
                     /locus_tag="PTC08_002473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="exo-alpha-sialidase"
                     /protein_id="HDK5683909.1"
                     /translation="NNEYQYVTQYSVKFNGSNLQEYHNNNKVKMNIFYKDSIFKVTPT
                     NYIVYTTSMDGQKWGHPEILPPFLGLNHNASYLSPGQGLATSTGRLIFASYTSQGLVF
                     IYSDDHGITWQATKADLPFKNATAETQMVELKPNVIRAFFRTTTGKIGYITSLDNGHT
                     WDNVHYLSQINQTRYGTQISVIKYSQKYQGKDVIILSTPNSRTGRNNGQIWIGLVDSK
                     TNNIDWIHHKQVDEINVGYSYSALTETKDSKILLLYEKY"
BASE COUNT          232 a          134 c          112 g          295 t
ORIGIN      
        1 catacttttc gtataataat aaaattttcg aatcctttgt ctcggttaat gctgaataag
       61 aataacccac attgatttca tcaacttgtt tatgatgaat ccagtcaata ttatttgttt
      121 tactatctac taaacctatc catatttgcc cattatttct tcctgttctt gaatttgggg
      181 tgctgagaat aataacatct tttccttggt atttctgtga atactttatt acagaaattt
      241 gtgtaccata tcgggtttga ttgatttgac ttaaataatg cacgttgtcc catgtatgac
      301 cattgtctaa actcgtaata tagcctattt tcccagttgt agttctgaaa aaagctctaa
      361 tcacatttgg ctttaattcg accatttgcg tttctgcagt tgcattctta aaaggtaaat
      421 cagcttttgt tgcctgccaa gttattccat gatcatcact ataaataaaa acaagtcctt
      481 gcgaagtata agatgcaaat attaaacgcc ctgtagaagt tgctaaacct tggccaggac
      541 ttaaatagga tgcattatga ttcaatccta aaaatggcgg taaaatttca gggtgccccc
      601 atttttgtcc atccatactc gtcgtataaa cgatataatt tgtaggtgtt actttaaata
      661 tcgaatcttt atagaaaata ttcattttaa ccttattatt attatggtat tcttgcaaat
      721 ttgaaccatt aaatttcact gaatattgcg ttacatattg atattcgtta ttt
//
LOCUS       DANHOL010000309          764 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.316, whole genome shotgun sequence.
ACCESSION   DANHOL010000309 DANHOL010000000
VERSION     DANHOL010000309.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 764)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 764)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..764
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.316"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(348..533)
                     /locus_tag="PTC08_002474"
     CDS             complement(348..533)
                     /locus_tag="PTC08_002474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683910.1"
                     /translation="MFEKPQMAHNEIFNIVLIVIGILAFVLFYFVFDAGYLLSFIIAF
                     VPIIVGIINLKEIRKKN"
BASE COUNT          275 a          132 c          114 g          243 t
ORIGIN      
        1 actaattatg ttagcttcaa actgaaacaa agtcaatcga aaatgcaata aattcaaaat
       61 gaaaatattg ttaaaacaat ccgaatattg ttactttttt ggtgttttga tgttattgag
      121 aggattgtat acaattagat acatcgacca tacgataaac gctgaggcat atactgctat
      181 atagacgagg cagtctaagg ggagtcttat tctctagata gcatcatcgt tacaggcgtt
      241 gacagtcact caaaaaatca tgggcagtcg tcgatttaag aaacaagatt tggatgtatc
      301 gtcctatcgc aaaataaaaa gcgacctatt aaaagatcgc tttgaactta atttttcttt
      361 cttatttctt tcaaattaat gatacctaca ataatcggta caaatgcaat gataaaactt
      421 aacaaatacc ctgcatcaaa aacaaagtaa aatagcacaa atgcaagaat tcctataacg
      481 attaatacaa tattaaaaat ttcattatgg gccatttgag gcttttcaaa cattcttcat
      541 acctccttag aaacaacttg ctgcagcacc aagcagcctg caggatagtg gtgaaaataa
      601 taatagaaag catcattttt gatatgttac tttgaagaat gcccataatt atttgaggtt
      661 aagataacaa ctttttgttt atttcagcct tcttattcta tctccaactc tgcttcttaa
      721 atgtccaata tgtaaacact cttaaaacgt attctagtgg tcca
//
LOCUS       DANHOL010000310          759 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.317, whole genome shotgun sequence.
ACCESSION   DANHOL010000310 DANHOL010000000
VERSION     DANHOL010000310.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 759)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 759)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..759
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.317"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            <1..>759
                     /locus_tag="PTC08_002475"
     CDS             <1..>759
                     /locus_tag="PTC08_002475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683911.1"
                     /translation="IDKTLLADEFNVNERTIKRDIQAIRNYFYDNEEWVMKKDIIFNY
                     KDNNYLIQSNHQMKDLEGLEILLIYLVANKTVIPNSMKEALKYMINVLFPNDKQKYET
                     YLKAIKSTNQFMSHKVLLVLYHAVEERQLLNITTEEGFMIRLLPIKVIHFKEDWYLVY
                     RGMDLQEQYLQIKRIHQVEIDDQAPQTLSNKMEVTLEMDVTVWSHIKDLYEVNKIISK
                     KDNLYTVIFNIAFIEAFELCLLHSPHIRIIGPPRL"
BASE COUNT          294 a          109 c          119 g          237 t
ORIGIN      
        1 attgacaaga cacttttagc tgatgaattc aatgtgaatg aaaggacaat caaaagagat
       61 attcaagcca ttagaaatta tttttatgac aatgaagaat gggtgatgaa aaaggatatt
      121 atttttaact ataaagataa caattatctt attcaatcta accatcaaat gaaagatttg
      181 gaagggcttg aaattttact catttattta gtggcgaata aaacagtcat acctaatagt
      241 atgaaagaag cattaaaata tatgattaat gtattgtttc cgaatgataa gcaaaaatat
      301 gaaacttatc ttaaagccat taaaagtacg aaccagttta tgtcacataa agttttactc
      361 gtgttatatc atgcggttga ggagcgacaa ttgcttaata ttacaacaga agaaggattc
      421 atgatacgct tacttcctat taaggtcatt cattttaaag aagactggta tctcgtatat
      481 cggggaatgg atttacaaga acaatactta caaatcaaac gaattcacca agtagaaatc
      541 gatgatcaag caccacaaac cttatccaat aaaatggaag taacgcttga aatggatgta
      601 actgtatggt cacatattaa agatttatat gaagtgaata aaattatttc taaaaaagac
      661 aatctttata cagtcatctt taatattgca tttatcgaag cattcgaatt atgtctccta
      721 cacagtcctc atattagaat tattggtcca cctcgctta
//
LOCUS       DANHOL010000311          754 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.318, whole genome shotgun sequence.
ACCESSION   DANHOL010000311 DANHOL010000000
VERSION     DANHOL010000311.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 754)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 754)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..754
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.318"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            25..450
                     /locus_tag="PTC08_002476"
                     /pseudo
     CDS             25..450
                     /locus_tag="PTC08_002476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020220413.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          275 a          146 c          174 g          159 t
ORIGIN      
        1 gaatttgtat caacagtaga ctcattgagt caagtaactt ctaacggaag cacaacgaaa
       61 gaagatgcaa gcacatttgt atccacagta gattcgttga aagacaaagc atcaaataat
      121 ggtacaccat cagagtttgc gtcagcagtg aaatcaacac acgcatcagt gagtgtgtca
      181 gcatcagaaa gtacatcagc atcgacatca acaagcgaag ctgtaagtac agaagcgagc
      241 gaatttgtat cagcagtaga ctcgttgagt caagtaactt ctaacggaag cacaacaaga
      301 gaaggtgcaa gcacgtttgt atcaacggta gattcactga aagataaagc gtcgaacaat
      361 ggtacgccat cagaatttga atcagttgtg aagtcagtac acggatcaat gagtacatca
      421 gcaagtgcgt caacgtcggc atcaacatca acaagtgatg cagtaagcac agaagcaagc
      481 gagtttgtat cagcagtgaa ctcattaagc agtgaagcat cgaatggtag cacaacaaga
      541 gaaggtgcaa gcacgtttgt atcaacggta gattcactga aagataaagc atcaaacaat
      601 ggtacaccat cagaatttga atcagttgtg aagtcagtac acggatcaat gagtgtatca
      661 gcaagtgcgt caacgtcggc atcaacatca acaagtgatg cagtaagcac agaagcaagc
      721 gaatttgtat cagcagtaga ctcgttgagt caag
//
LOCUS       DANHOL010000312          741 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.319, whole genome shotgun sequence.
ACCESSION   DANHOL010000312 DANHOL010000000
VERSION     DANHOL010000312.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 741)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 741)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..741
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.319"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
BASE COUNT          279 a           77 c          142 g          243 t
ORIGIN      
        1 aaagagaagt ttgattttga ggttaaaatg aattcaaatt ggtaacgact ttgaggatga
       61 aaattatttt gatatgtgaa aagggatttt ctttgaatag caagataggt ttgaaatata
      121 gataactaaa gggtttagaa agattgtgta gttgataaac cccgagtata atggtttgtt
      181 tttcattgtg aggatagtaa aaaatatctt aaatataaaa tgtaatttat tgtgactttg
      241 aatgaaattt tgagcgaacg agcaacttgg tactagtaaa aattttatgc atttgcacaa
      301 taacaaaaac agtgatgacc attatagtct aagtggcgag cggattcaac tcatttttag
      361 tgaagtggac gtaaatgatg ttaagttttg ttgtagatga ttggatagag ctattacata
      421 tatgatttga ggaaaatcat aaaaaatagg taagtgtcac ctatataatt gaaacaacga
      481 cacagctgtt aaaagtgaca gtgcatcgta agtacagcga tacagcctgt tttaagcgga
      541 taccgcgtcg tctttacatc agctttcaaa taacgaggtt ttggaaattg taaaaataag
      601 tatacagtat aaataagcag ataagtaaaa ataatgcgaa ataaaaaata aatatttctt
      661 gacatgaaca tgactcaatg ctttagtaca tatcttatat atatacgatt cttttttaag
      721 ttgtatcaaa atttggcata t
//
LOCUS       DANHOL010000313          738 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.320, whole genome shotgun sequence.
ACCESSION   DANHOL010000313 DANHOL010000000
VERSION     DANHOL010000313.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 738)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 738)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..738
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.320"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(270..358)
                     /locus_tag="PTC08_002477"
     tRNA            complement(270..358)
                     /locus_tag="PTC08_002477"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(321..323),aa:Ser,seq:gga)
     gene            complement(408..479)
                     /locus_tag="PTC08_002478"
     tRNA            complement(408..479)
                     /locus_tag="PTC08_002478"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(444..446),aa:Glu,seq:ttc)
     gene            complement(481..555)
                     /locus_tag="PTC08_002479"
     tRNA            complement(481..555)
                     /locus_tag="PTC08_002479"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(521..523),aa:Asn,seq:gtt)
     gene            complement(563..636)
                     /locus_tag="PTC08_002480"
     tRNA            complement(563..636)
                     /locus_tag="PTC08_002480"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(602..604),aa:Gly,seq:tcc)
     gene            complement(656..728)
                     /locus_tag="PTC08_002481"
     tRNA            complement(656..728)
                     /locus_tag="PTC08_002481"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(693..695),aa:His,seq:gtg)
BASE COUNT          239 a          165 c          160 g          174 t
ORIGIN      
        1 tattaaaaca actttagatg tatattcgca tttattagaa gaaactaaag aggcagaaat
       61 tgcgaaaaca cttattgcga tagaatcgtt ggcgtgattt taaaattgtt ggcgtaaatc
      121 gaaattattt gcgtctagtt ggcttggcgt tggcgtaaaa ataaaaatac gagtgtcacc
      181 taaaatcaac gaaatacaac aaaatactgt catatcaacg tttgtagtca cgtgatacaa
      241 cagtaaatta acgaaatata agcaaaatac ggagagcaag ggattcgaac cctcgagacg
      301 cttgtggcgc ctacacactt tccaggcgtg ctccttcggc caactcggac aactctccac
      361 cttataaaat ataaaaaatc agaagcgata tttcacttct gactatatga cccctacggg
      421 actcgaaccc gtgttaccgc cgtgaaaggg cggtgtctta accgcttgac caaggggccg
      481 tggctccaca ggtaggactc gaacctacga ccgatcggtt aacagccgat agctctacca
      541 ctgagctact gtggaataac aatggagcgg gtgatgggaa tcgaacccac aacatcagct
      601 tggaaggctg aggttttgcc attaaactac acccgcatta aaaataaacg atataggcgg
      661 ttgatgggaa tcgaacccac gagtgtcgga accacaatcc gatgcgttaa ccacttcgcc
      721 acaaccgccg tgatttaa
//
LOCUS       DANHOL010000314          734 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.321, whole genome shotgun sequence.
ACCESSION   DANHOL010000314 DANHOL010000000
VERSION     DANHOL010000314.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 734)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 734)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..734
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.321"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            93..623
                     /locus_tag="PTC08_002482"
     CDS             93..623
                     /locus_tag="PTC08_002482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014612795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative metal-dependent hydrolase"
                     /protein_id="HDK5683912.1"
                     /translation="MDVRYPIGRLEVPATVTRRHIDSWLEEIAQYIQNLRKTVANLSQ
                     EDLQATYREGSFTVQQLVHHIADSQMNMFQRLKLALTDTHPKVSNFAQDEWVKLADSD
                     LPIEVSIQMLDAINQRVVAIGQHLTEKELARDFVLEGSGATTVGETVAKLSWHARHHL
                     AHIQIALGELEVNDAL"
BASE COUNT          242 a          109 c          167 g          216 t
ORIGIN      
        1 gggatatgct ctttgattag tcgtatcgaa ttacatatgt agtgtgaaat gatatgatta
       61 aagtgtctta tactatgaat ggaggggtca ttatggatgt aagatatccg attggaaggt
      121 tagaagtgcc agcaactgtg acgcgtagac acatcgattc ttggctagaa gaaattgcgc
      181 aatatataca aaatttaaga aaaacagtag caaatttgag ccaagaagat ttgcaggcga
      241 cctatcgaga gggaagcttt acggtacaac aacttgtcca tcatattgca gactcacaga
      301 tgaatatgtt tcagcggtta aaattggcct tgactgatac acatcctaaa gtgtccaatt
      361 ttgcccaaga tgaatgggtc aagttggctg attcagattt accaatagaa gtatctatcc
      421 aaatgcttga tgcgattaat caacgtgtcg ttgcaatagg tcaacattta accgaaaaag
      481 aactggcaag agattttgtg ttagagggca gtggtgcaac aacggtaggg gaaacagttg
      541 caaagttatc atggcatgca cgtcatcatc ttgcacatat tcaaattgct ttaggagaac
      601 tagaagtgaa tgatgcactt tgacttttta actgatgata gaggtatcta gttgaaaatg
      661 gagtaagaag agaagaagtg atatttttaa gttctttcat cttgacataa atcagctata
      721 gttatttcga tgtt
//
LOCUS       DANHOL010000315          732 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.322, whole genome shotgun sequence.
ACCESSION   DANHOL010000315 DANHOL010000000
VERSION     DANHOL010000315.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 732)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 732)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..732
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.322"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(<1..706)
                     /locus_tag="PTC08_002483"
     rRNA            complement(<1..706)
                     /locus_tag="PTC08_002483"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
BASE COUNT          157 a          222 c          158 g          195 t
ORIGIN      
        1 gcatttcacc gctacacatg gaattccact ttcctcttct gcactcaagt tttccagttt
       61 ccaatgaccc tccacggttg agccgtgggc tttcacatca gacttaaaaa accgcctacg
      121 cgcgctttac gcccaataat tccggataac gcttgccacc tacgtattac cgcggctgct
      181 ggcacgtagt tagccgtggc tttctggtta ggtaccgtca agatgtgcac agttacttac
      241 acatttgttc ttccctaaca acagagcttt acgatccgaa gaccttcatc actcacgcgg
      301 cgttgctccg tcaggctttc gcccattgcg gaagattccc tactgctgcc tcccgtagga
      361 gtctggaccg tgtctcagtt ccagtgtggc cgatcaccct ctcaggtcgg ctacgtatcg
      421 tcgccttggt aggccgttac cccaccaact agctaatacg gcgcgggtcc atctataagt
      481 gacagcaaga ccgtctttca ctgtagaacc atgcggttca acatgttatc cggcattagc
      541 cccggtttcc cggagttatt ccagtcttat aggtaggtta cccacgtgtt actcacccgt
      601 ccgccgctaa cgtcaaagga gcaagctcct tatctgttcg ctcgacttgc atgtattagg
      661 cacgccgcca gcgttcatcc tgagccagga tcaaactctc cataaaagaa gtaagcttga
      721 tatagctcgt tg
//
LOCUS       DANHOL010000316          730 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.323, whole genome shotgun sequence.
ACCESSION   DANHOL010000316 DANHOL010000000
VERSION     DANHOL010000316.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 730)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 730)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..730
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.323"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            <1..180
                     /locus_tag="PTC08_002484"
     CDS             <1..180
                     /locus_tag="PTC08_002484"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683913.1"
                     /translation="DAVSDIKKLIIGVKKSTIEMNLKKHIPIVVKTLVHNGIDIYQIK
                     QKELSLEEIFLKSEN"
BASE COUNT          292 a           95 c          117 g          226 t
ORIGIN      
        1 gatgcagttt cggatataaa aaaattaata attggagtaa aaaaatcaac tatagaaatg
       61 aatttaaaaa aacatattcc tatcgtagta aaaacactag ttcataatgg tatcgatata
      121 tatcaaatta aacagaaaga attatcttta gaagaaatat ttttaaaaag tgaaaattaa
      181 agcaaacatg cctatgcata atatataact actagtatca cataaaaaat cctctataat
      241 ggttggagcc ttaaggacct ttagatctaa tcaaacatac taagattagc tttgaataaa
      301 actatcgtca taaatttctt gatggctatt ttttatagtt gtagaaagaa gtaaatcgac
      361 tagcccaatg gatcttttaa tccgtaaaac aaactgatta gttttactta ttcgattgaa
      421 gtatgttggg ttctagaaat catgtatagg aaaatgaaat gaaagaggat acgtaaagtt
      481 aaaatcttct caattcaata gagaaagata tgatttttat taactgttta gattttgata
      541 taagcaagtt agaggcacat aaactcgcgc ttcttacctt tagaatgaaa gattcaaagg
      601 gccatcgtca gtctgaagag atacactatg aactgagcga agtacacgct ttcgcttaga
      661 catggagatg aaccataatc gtctcaaaga tagtgtagtt tttcaatcaa ttaagactaa
      721 taatggagta
//
LOCUS       DANHOL010000317          712 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.325, whole genome shotgun sequence.
ACCESSION   DANHOL010000317 DANHOL010000000
VERSION     DANHOL010000317.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 712)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 712)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..712
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.325"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(80..634)
                     /locus_tag="PTC08_002485"
     CDS             complement(80..634)
                     /locus_tag="PTC08_002485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase family protein"
                     /protein_id="HDK5683914.1"
                     /translation="MTKLYIVHGYQADASKHWFPWLKQSLEIEGHDVEVLNLPNSHEP
                     HVEEWLTYMRQTIPEVDADTIFVAHSLGVITTLKFLNDLDVSKVGGLAIVSGFKDKLE
                     GIETLDAFIEQEIDFDQLKHKIIKRFGIASKTDDIVPYTLTAELCKALDAKFYLQEEG
                     GHFLEKDGYDTFLFLRNKILKNFD"
BASE COUNT          233 a          139 c          101 g          239 t
ORIGIN      
        1 tgtatcctac acctacatta tatttaggct cacctaaaaa agcaagcgaa ttgatatacg
       61 tttacgaatt tgtcatattt taatcgaaat tctttagtat tttatttctc aagaacagaa
      121 atgtatcata gccatctttt tcaagaaaat ggcctccctc ttcttgtaaa taaaatttag
      181 catcaagtgc cttacacagt tcagctgtta acgtatatgg cacgatatcg tctgttttag
      241 aagcaatccc aaaacgttta atgatcttat gtttaagctg gtcgaaatca atttcttgtt
      301 caataaaggc atccaaagtt tctatgcctt ctaacttatc tttgaaacct gaaacaatag
      361 ctaatccacc tactttcgac acatctaaat cgtttaaaaa tttcaaagtt gtaatgacac
      421 ctaaactatg tgcaacgaaa atggtatcag catcaacttc tggaattgtt tgtcgcatat
      481 atgtaagcca ttcttcgaca tgaggttcat gcgagttggg taagttgagt acttctacat
      541 catggccttc aatttcaagt gattgcttta accatggaaa ccaatgcttt gatgcatcgg
      601 cttggtaacc atgcacaata tatagctttg tcatgataca aaacgccttc tttctataga
      661 ttcaacacta ttatcataac ataaatcaac atatccattt gaaaacataa at
//
LOCUS       DANHOL010000318          697 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.326, whole genome shotgun sequence.
ACCESSION   DANHOL010000318 DANHOL010000000
VERSION     DANHOL010000318.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 697)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 697)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..697
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.326"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(<1..204)
                     /locus_tag="PTC08_002486"
     CDS             complement(<1..204)
                     /locus_tag="PTC08_002486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002474311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Arm DNA-binding domain-containing protein"
                     /protein_id="HDK5683915.1"
                     /translation="MPVYKDDKTGKWYFSVRYKDVFGNNKRKMKRGFKTKRQAKVAEA
                     DFIQKTKNGYSDKQIYEVVFYEQL"
     gene            320..517
                     /locus_tag="PTC08_002487"
     CDS             320..517
                     /locus_tag="PTC08_002487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002452298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683916.1"
                     /translation="MSPKVKARKKPVVVDAEKAKKTTFIDTLEGRMKAEKGDWIITGV
                     NGEQYPVKPDIFEKTYEVLPD"
     gene            complement(514..>697)
                     /locus_tag="PTC08_002488"
     CDS             complement(514..>697)
                     /locus_tag="PTC08_002488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015977903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="TIR domain-containing protein"
                     /protein_id="HDK5683917.1"
                     /translation="NTFGSEWVNWELATAYDLNKPIVAIKIDRSYKSPIEIYGKNVHW
                     AYSFTYEAIKKALLEV"
BASE COUNT          237 a          117 c          104 g          239 t
ORIGIN      
        1 taattgttca taaaacacaa cttcgtaaat ttgtttatct gaataaccgt ttttagtttt
       61 ttgaataaaa tctgcttctg caactttagc ttgacgtttt gttttaaatc cacgcttcat
      121 tttgcgttta ttatttccaa acacatcttt ataccttact gaaaaatacc atttacctgt
      181 tttgtcgtct ttgtacaccg gcatttcgtc attcctcctc aaaaaaagta aaaaaataat
      241 aagggtacgt gggaggtacc cgtgtaatat taaatagtca tttttcatgt tataataaat
      301 taaaaagtag gtgaaacgaa tgtctcctaa agtaaaagcc agaaaaaaac ctgttgtagt
      361 cgatgcagaa aaagctaaaa aaacaacttt tattgatact ttagaaggtc gtatgaaagc
      421 tgaaaaagga gactggatta tcaccggagt aaacggtgaa caatatccag tcaaacctga
      481 tattttcgaa aaaacttatg aagtgcttcc cgattaaact tcgagaagtg cttttttaat
      541 agcttcatat gtaaaagaat atgcccaatg tacattcttt ccataaattt ctataggtga
      601 cttataactt ctatcaattt ttattgcaac aataggcttg tttaagtcat aagctgttgc
      661 taattcccaa tttacccatt cggatccaaa agtgttt
//
LOCUS       DANHOL010000319          696 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.327, whole genome shotgun sequence.
ACCESSION   DANHOL010000319 DANHOL010000000
VERSION     DANHOL010000319.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 696)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 696)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..696
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.327"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(<1..677)
                     /gene="cas1"
                     /locus_tag="PTC08_002489"
     CDS             complement(<1..677)
                     /gene="cas1"
                     /locus_tag="PTC08_002489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002502667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II CRISPR-associated endonuclease Cas1"
                     /protein_id="HDK5683918.1"
                     /translation="MKDIIYVENHHFVSVKGESIKFKNIIDKTERYFLLDDVEALIFD
                     SHKSYFSHNLILKCIENDIAILFCDYKHSPATQILSNYGMTKRLQRMQSQLQFSAKSK
                     DRVWKKIVVCKILNQVMCLENNTQASQITQYMKALTKEVRGRDVTNREAVAARVYFKH
                     LYGPDFKRGRFDDAINAGLNYGYAVVRSFIKKELALHGYEMSLGIKHQSLENPFNLVD
                     DIIEVYRP"
BASE COUNT          226 a          137 c           88 g          245 t
ORIGIN      
        1 ggacgatata cttcaataat gtcatctaca agattaaaag ggttttcgag agattgatgc
       61 ttaattccta aactcatttc ataaccatgg agtgctaatt cttttttaat aaaagacctt
      121 acaacagcat acccatagtt aagacctgca ttaatcgcgt catcaaatct acctctttta
      181 aaatccggtc catacaagtg tttaaaatat actctagcag caacagcttc tctattcgtt
      241 acatctctac ctctcacctc tttagtaagc gctttcatat attgcgtgat ttgactagct
      301 tgtgtgttat tttcgaggca catgacctga tttagtattt tacatactac aattttcttc
      361 caaactctgt cttttgattt agcagaaaac tgtaactgag actgcatcct ttgtaacctt
      421 tttgtcatgc cataattgga aaggatttgt gtagcaggag aatgtttata atcacagaag
      481 agaatagcaa tatcattttc aatacacttt aaaatcaaat tatgtgaaaa ataactttta
      541 tgactatcaa atatcagtgc ttcgacatca tctaataaaa aatatcgctc tgttttatct
      601 ataatatttt taaacttaat actttcccct ttcacactga caaaatgatg attctcaaca
      661 taaatgatat ccttcatctt tacaccccct agataa
//
LOCUS       DANHOL010000320          692 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.328, whole genome shotgun sequence.
ACCESSION   DANHOL010000320 DANHOL010000000
VERSION     DANHOL010000320.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 692)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 692)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..692
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.328"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            <1..>692
                     /locus_tag="PTC08_002490"
     CDS             <1..>692
                     /locus_tag="PTC08_002490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683919.1"
                     /translation="KACIIENQILFSVFLDEPQHQFVYRDDYLNEEIGAIEVFNNKVY
                     KVLSTRMIEGELYGYLKGQREIGWTKLKNSHYVFNKQDEIVFVKNKEGIQNELNITYQ
                     FVDGFTKEVQNKFLTSKGFIKYKGEFYELLFEKHKLIGFMKPSDIDVGYHVDEDVHLL
                     QGAELYLESRLKTKAENISEKDDFTLKLVFPERGIGKVERKNQVYWIELNHVVEHQLE
                     RVFHSLQDYSST"
BASE COUNT          266 a           78 c          141 g          207 t
ORIGIN      
        1 aaagcgtgta tcattgaaaa ccaaattctt tttagcgtat ttttagatga accacaacat
       61 caatttgtgt atagagatga ttatttaaat gaggaaatag gcgcaataga agtgtttaat
      121 aataaagttt ataaggtttt aagtacgaga atgattgagg gcgaacttta tggctactta
      181 aaagggcaaa gagagattgg atggaccaag ttaaaaaatt ctcattacgt ctttaataaa
      241 caagacgaaa tcgttttcgt gaagaataaa gaagggattc aaaacgagtt aaatattaca
      301 tatcagttcg tagatggttt tactaaggaa gttcagaaca aattcttaac gtctaaaggt
      361 tttataaaat ataaagggga attttatgag ctcttatttg agaaacataa attaatcggc
      421 tttatgaaac catctgacat agatgtagga tatcatgtgg acgaggatgt gcacttatta
      481 caaggtgcag aattgtattt agaaagtcgt cttaaaacaa aagccgaaaa catcagcgag
      541 aaagatgact ttacattgaa attagtgttt ccagaaagag gaattggtaa ggtagagaga
      601 aaaaatcaag tgtattggat tgaattaaat catgtagtag agcatcaact tgaacgtgta
      661 tttcattcat tgcaagatta tagttcaaca ga
//
LOCUS       DANHOL010000321          683 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.329, whole genome shotgun sequence.
ACCESSION   DANHOL010000321 DANHOL010000000
VERSION     DANHOL010000321.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 683)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 683)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..683
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.329"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(<1..>683)
                     /locus_tag="PTC08_002491"
     rRNA            complement(<1..>683)
                     /locus_tag="PTC08_002491"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
BASE COUNT          157 a          186 c          162 g          178 t
ORIGIN      
        1 caaactctcg tggtgtgacg ggcggtgtgt acaagacccg ggaacgtatt caccgtagca
       61 tgctgatcta cgattactag cgattccagc ttcatgtagt cgagttgcag actacaatcc
      121 gaactgagaa caactttatg ggatttgctt gacctcgcgg tttcgctgcc ctttgtattg
      181 tccattgtag cacgtgtgta gcccaaatca taaggggcat gatgatttga cgtcatcccc
      241 accttcctcc ggtttgtcac cggcagtcaa cttagagtgc ccaactgaat gatggcaact
      301 aagttcaagg gttgcgctcg ttgcgggact taacccaaca tctcacgaca cgagctgacg
      361 acaaccatgc accacctgtc actttgtcct ccgaagagga aaactctatc tctagagcgg
      421 tcaaaggatg tcaagatttg gtaaggttct tcgcgttgct tcgaattaaa ccacatgctc
      481 caccgcttgt gcgggtcccc gtcaattcct ttgagtttca gtcttgcgac cgtactcccc
      541 aggcggagtg cttaatgcgt tagctgcagc actaaggggc ggaaaccccc taacacttag
      601 cactcatcgt ttacggcgtg gactaccagg gtatctaatc ctgtttgatc cccacgcttt
      661 cgcacatcag cgtcagttgc aga
//
LOCUS       DANHOL010000322          669 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.331, whole genome shotgun sequence.
ACCESSION   DANHOL010000322 DANHOL010000000
VERSION     DANHOL010000322.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 669)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 669)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..669
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.331"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            207..455
                     /locus_tag="PTC08_002492"
     CDS             207..455
                     /locus_tag="PTC08_002492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001813349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683920.1"
                     /translation="MKSNTHKVAKGINSSLLTSKGVDIGKFTQKVRGKNPVYRDPKTG
                     WSISKNKGQPHGGSYWKLLDKGGTRKATLTKDGKILRK"
     gene            470..>669
                     /locus_tag="PTC08_002493"
     CDS             470..>669
                     /locus_tag="PTC08_002493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000368755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683921.1"
                     /translation="MSNIISCMEVSGLKFSEGENAVHLDLSEGEYPFLDDGKSFNKDY
                     FARIHNNAIQILQDLFQQSNTI"
BASE COUNT          252 a           79 c          145 g          193 t
ORIGIN      
        1 tagattatac aattgattta acatatgctg atgaaaaaga catagctggg tttttaatag
       61 ataatttaac tggcgaggaa catgaatttg atacaagatt ggctgaagct tctgccgcac
      121 ctatagtagt tgtggcggta atggctgcta ggtatggtat ccagtgggct attaaaaagt
      181 acggtaaaaa ggcagtgagt aatgctataa aatcaaatac gcataaagtg gcgaaaggaa
      241 taaactctag ccttctaact agtaaaggag tggatatcgg aaaattcaca caaaaagtga
      301 gagggaaaaa cccagtctat agagatccta aaactggatg gtctatttca aaaaataaag
      361 ggcagcctca tggaggatct tattggaaat tgttggataa aggtggtaca agaaaagcta
      421 ctttaactaa agatggaaaa atacttcgta aatagggtga ttgataaaaa tgagtaatat
      481 tattagttgt atggaagtaa gtggtttaaa attctctgaa ggtgaaaatg ctgttcattt
      541 agatttaagt gaaggcgaat accctttttt agatgatgga aaaagcttta acaaagatta
      601 ttttgcaagg attcataaca atgcaattca aattttacaa gatttgtttc aacaaagtaa
      661 tactattga
//
LOCUS       DANHOL010000323          665 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.332, whole genome shotgun sequence.
ACCESSION   DANHOL010000323 DANHOL010000000
VERSION     DANHOL010000323.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 665)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 665)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..665
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.332"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
BASE COUNT          242 a           95 c          115 g          213 t
ORIGIN      
        1 aatatatgtt ggtaaaaatc aaaaagctag tgtcaatttt aaatatagaa atccaaacac
       61 gacattggat ctagctaata cgtttattat tcatcaagga attcaacatg ggttaggagt
      121 aaggttataa tatagttgac ttaatctaaa aaaaatgata tttttatgtt attcaaagat
      181 acttttcttg ataaatttgt aaatgatacc tttctttaca aatgattttt atattaaagt
      241 cctgaacaaa taacggtacc cacctaccga gcgtaattta ggcaactgtt actgacggtt
      301 acctatttac ccaccacacc ctcacggtgt ggtatttttt atgcgaaaaa tttgaaaaaa
      361 gttagtgaaa ggggttgttt agtacggcaa accgtgctaa aataaggtat accagttgag
      421 aggaggaaga aaagtgttag aaacgattaa ggcaatagca gaaattgtct tttatgcagt
      481 gtccacattg gcaattgtaa aaacactgat aaaagacgat agcaagtaag acaacgcccg
      541 aaagggcttg tctaccttaa ttctaacact aaactattat gaaaacaatt tacgttatct
      601 taattttaat catttggctt aatgttattt taggaaatga tataagcgat agtgttatcg
      661 cttta
//
LOCUS       DANHOL010000324          661 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.333, whole genome shotgun sequence.
ACCESSION   DANHOL010000324 DANHOL010000000
VERSION     DANHOL010000324.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 661)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 661)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..661
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.333"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            262..>661
                     /locus_tag="PTC08_002494"
     CDS             262..>661
                     /locus_tag="PTC08_002494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683922.1"
                     /translation="MKTNIDYVFKDKSIYIKSDEQIFELSGISQESFSKIWNEIQEDH
                     LHCEEQDVVKKKIIEFLKTIHAFEDVANTASFLQMIGLKMEHKAFENHVIGICGDDDL
                     VELYIRKSPSQNVVNLNEEVTDDYDIGLIIL"
BASE COUNT          240 a           82 c          126 g          213 t
ORIGIN      
        1 tttaggcgct ttgattattg gattgttata cagtttcctt tttgtttttt aaaatttgaa
       61 aaggggtggt tacaatgtta gccaacgaat tacaaatcaa aaaattgaac actgaagact
      121 ttttatcaag cgaacaaatg aactggacaa taacactttg ttgttgccct tgctgctgtt
      181 gttgttaaag tatatgtttt aaaggaattg aagttaacca tagcttcaat tccttttttg
      241 aaaatgagag gagagcacat catgaaaaca aacatcgatt acgtttttaa agataaaagt
      301 atatacataa aaagtgacga gcagattttt gaattaagtg gtatctctca agagtctttt
      361 agtaaaatat ggaatgaaat ccaagaagat catttgcatt gtgaggaaca agatgtggtg
      421 aagaaaaaaa taattgaatt cctcaaaaca attcatgcat ttgaagatgt cgccaataca
      481 gcatcctttt tgcagatgat tggattaaaa atggagcata aagcgtttga aaatcatgtc
      541 ataggtatat gtggagacga tgatttagtc gaactgtata ttcgaaaatc accttctcaa
      601 aatgtagtga atttaaatga agaagtaacg gatgattatg atatcggatt aatcatactg
      661 a
//
LOCUS       DANHOL010000325          658 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.334, whole genome shotgun sequence.
ACCESSION   DANHOL010000325 DANHOL010000000
VERSION     DANHOL010000325.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 658)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 658)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..658
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.334"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(437..613)
                     /locus_tag="PTC08_002495"
     CDS             complement(437..613)
                     /locus_tag="PTC08_002495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016998564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="HDK5683923.1"
                     /translation="MSKTVVRKNESLEDALRRFKRSVSKSGTIQEVRKREFYEKPSVK
                     RKKKSEAARKRKFR"
BASE COUNT          211 a          119 c           91 g          237 t
ORIGIN      
        1 acatagttaa ctccatcaaa atcatttgat tgtgtttccg gtgttccttc tgctgcataa
       61 gcttgagacc ccgctaagcc gactaatcct agtgaaatag aaagtgctga aactttaaaa
      121 atatttttca ttttctaatt acctcctact cttgatataa aaagtatacc aataaatgga
      181 taaattgtaa atcatgatgc tttgaaaaac aaacaatttc ataagcataa taattattta
      241 tctgtctata tattgctaga taattttata gttcatacaa aaaggagatc aagcaacact
      301 ttttgcctaa tctctgtatt ttacacttca aacctatttg aaaatagcca aataaaacaa
      361 cacactctct tattagtgag agtgtgttgc aatatatcat tatttgaatg ttgagggagt
      421 tcaacacatt gaatgattat ctgaacttac gtttacgcgc agcttcagat ttctttttgc
      481 gttttacgct tggtttttca taaaattcgc gtttgcgaac ttcttgaatt gtaccgcttt
      541 ttgaaactga gcgtttaaaa cgacgtaaag catcttctaa tgattcgttt ttgcggacta
      601 ctgttttaga catctgtatt tccctccctc caaatatcaa aaaaactttt attcatca
//
LOCUS       DANHOL010000326          658 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.335, whole genome shotgun sequence.
ACCESSION   DANHOL010000326 DANHOL010000000
VERSION     DANHOL010000326.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 658)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 658)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..658
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.335"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            35..523
                     /locus_tag="PTC08_002496"
     CDS             35..523
                     /locus_tag="PTC08_002496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019155234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683924.1"
                     /translation="MKDKYGNDIDKTFDIKFTRLVNENDFSAEFIDKTTGDKIVYDTH
                     KVNASVWPVVGVLVGYLAKHSIKLAIKKYGKNVVTSMIRTSPKVAVEAAKKLGYSPTK
                     SYSHGKKVFKRNKRGNPMYITPDDDNHSGGAWKGASGIKKLGNKKTRSGTYDANLKRI
                     GD"
BASE COUNT          250 a           88 c          128 g          192 t
ORIGIN      
        1 tgaagtcact gatactatta cggccgatgc cagtttgaaa gataaatacg gcaatgatat
       61 tgacaaaact tttgatatca aatttactag attagttaac gaaaatgatt tctctgctga
      121 atttattgac aaaaccacag gtgataagat tgtatatgat acacataaag tcaatgcttc
      181 tgtttggcca gttgttggtg ttttagttgg gtatttagct aagcatagta taaaacttgc
      241 tataaaaaag tatggtaaaa atgttgtaac atctatgatt cgtacaagcc caaaggttgc
      301 tgttgaagct gctaaaaagt taggttattc gccaacaaaa tcttattccc acggtaaaaa
      361 agtgtttaaa agaaataaac gaggtaaccc aatgtatata actcccgacg acgataacca
      421 tagtggtgga gcttggaaag gagctagtgg tattaagaaa ttgggcaata aaaaaacgcg
      481 tagtggcaca tatgatgcta atttgaagag aattggagat taataatgga tattaaacta
      541 aaaaatctag taattcaatt cgacttaaac agtgaaagtc cttattttca agttgaagat
      601 aattacaaaa taagatggga tattaactcg attcaaaaga gagaccttgc agaaataa
//
LOCUS       DANHOL010000327          650 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.337, whole genome shotgun sequence.
ACCESSION   DANHOL010000327 DANHOL010000000
VERSION     DANHOL010000327.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 650)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 650)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..650
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.337"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(<1..320)
                     /locus_tag="PTC08_002497"
     CDS             complement(<1..320)
                     /locus_tag="PTC08_002497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019467708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HDK5683925.1"
                     /translation="MTKNQNFIETKEYKRFAEFCDACIKYQYIGICYGQPGVGKTLSS
                     RYYTNWNTIEKQVNHRGWEDLASKTTDDILSVNKIFYTAPAEKQTRLSNDLYSISASI
                     DLGQ"
     gene            complement(313..>650)
                     /locus_tag="PTC08_002498"
     CDS             complement(313..>650)
                     /locus_tag="PTC08_002498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000790716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Mu transposase C-terminal domain-containing
                     protein"
                     /protein_id="HDK5683926.1"
                     /translation="GIHFQGFRYSNTNLTAYVGEYVLIRYNPNDMAEIRVFYRDEFLC
                     TAISPDLADYSIDIKEIQHARSQRRKHLKQNIASPSTTDLIKEEKSYGYSPQETTKNV
                     KKLKRYRND"
BASE COUNT          192 a          117 c           93 g          248 t
ORIGIN      
        1 ttttgaccca aatcaatact tgcactaata ctatatagat cattacttaa tcttgtttgt
       61 ttttcagccg gtgcagtata aaatatctta ttcaccgata atatatcatc agtcgtttta
      121 ctagctagat cttcccaccc tctatgatta acttgctttt caatagtatt ccaatttgtg
      181 taatacctag aagataaagt ttttccgaca ccaggttgac catagcagat cccaatatat
      241 tgatatttga tacaagcatc gcaaaattca gcaaatcgtt tatactcttt cgtttcaatg
      301 aaattctgat ttttagtcat tacgatacct ctttaatttt ttgacgtttt tggtcgtttc
      361 ttgaggtgag taaccataac ttttttcttc cttaattaaa tcagtggtgc ttggactagc
      421 aatgttttgt tttaagtgtt ttcttctctg actacgtgcg tgttgtatct cttttatatc
      481 aattgaataa tcagctaaat caggggatat tgctgtacaa agaaattcat ctctataaaa
      541 aacgcgtatt tcagccatat cattgggatt gtaacgaatt aatacatact cacctacata
      601 agcagttagg tttgtattac tgtatctaaa gccttgaaaa tgaataccat
//
LOCUS       DANHOL010000328          584 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.342, whole genome shotgun sequence.
ACCESSION   DANHOL010000328 DANHOL010000000
VERSION     DANHOL010000328.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 584)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 584)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..584
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.342"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(<1..>584)
                     /locus_tag="PTC08_002499"
     CDS             complement(<1..>584)
                     /locus_tag="PTC08_002499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000790716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transposase family protein"
                     /protein_id="HDK5683927.1"
                     /translation="YDLIQIRESSRPNEIWQADHTLLDIYILDQKGNINRPWLTIIMD
                     DYSRAIAGYFISFDAPNAQNTALTLHQAIWNKNNTNWPVCGIPEKFYTDHGSDFTSHH
                     MEQVAIDLKINLMFSKVGVPRGRGKIERFFQTVNQTFLEQLPGYINNNDTSSDLIDFQ
                     NFEEKLRYFLIEDYNQKEHSAIQSTPINRWNSNH"
BASE COUNT          167 a           97 c          106 g          214 t
ORIGIN      
        1 atgattactg ttccaccgat tgataggagt gctctggata gcactgtgct ctttttgatt
       61 ataatcttca attaaaaagt atcgtaattt ttcttcgaaa ttttgaaaat ctattaaatc
      121 gctagaagta tcattattgt ttatatatcc aggaagttgt tctaagaaag tttggttaac
      181 tgtctgaaaa aaccgttcta ttttcccgcg accacgaggg acaccaactt ttgaaaacat
      241 caagttaatt ttcaaatcaa tagcgacttg ttccatgtgg tgcgaggtaa agtcactccc
      301 gtgatctgtg tagaattttt cgggtatacc acatactggc caattggtat tattcttatt
      361 ccatattgct tggtgtagtg ttaatgctgt gttttgagca ttaggagcat caaaacttat
      421 aaagtagcct gcaattgcac gactatagtc atccataata atggttagcc atggtctatt
      481 gatattacct ttttgatcta atatataaat atctagcaaa gtatggtcgg cttgccatat
      541 ttcattgggt cttgaggatt ctcttatttg tattaaatcg tact
//
LOCUS       DANHOL010000329          576 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.344, whole genome shotgun sequence.
ACCESSION   DANHOL010000329 DANHOL010000000
VERSION     DANHOL010000329.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 576)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 576)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..576
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.344"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            495..576
                     /locus_tag="PTC08_002500"
                     /pseudo
     CDS             495..576
                     /locus_tag="PTC08_002500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001095317.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
BASE COUNT          240 a           74 c          111 g          151 t
ORIGIN      
        1 aaattatata atcatgtctt aactcaatat ttgaacagag gttgtttgat tgagacatga
       61 tatatacgaa agagtgttat tttacaatta aaagaataaa accaaatgat gctgaactgg
      121 gtagacatta tcattgcgac cccagaacag ttaaaaaata ttacgaagct ggaaaagaaa
      181 atgagttaga aaaaaagcaa ggaaaacgag agcaacaaaa ttagaacctt ataaaacgct
      241 catagacgaa aaattagagt taggttgtat ggctatggcg attaataaat agatttctaa
      301 aaaaggatat gaaggcaagt atacgattct gagagaatat tgtaagaata agaaagaaaa
      361 ggaatttaaa aagcaattat acgggtagaa acacaccccg gtatagctgc tcaagtagac
      421 tggaaagaag atatggtcat gcgtgataaa tttggcaaac gttatcaatt caatatcttt
      481 ctttacgttt atataatata tggttcttag gcaatagcgg taccgataag acccatctag
      541 caatatcgct aggcatagaa gtctgtaaac aaaata
//
LOCUS       DANHOL010000330          575 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.345, whole genome shotgun sequence.
ACCESSION   DANHOL010000330 DANHOL010000000
VERSION     DANHOL010000330.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 575)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 575)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..575
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.345"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            360..512
                     /locus_tag="PTC08_002501"
                     /pseudo
     CDS             360..512
                     /locus_tag="PTC08_002501"
                     /inference="COORDINATES: protein motif:HMM:NF028245.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="putative holin-like toxin"
BASE COUNT          196 a           80 c          102 g          197 t
ORIGIN      
        1 ttagccacaa gtgatcaatc atcacatttt tctacaatat acataaaaaa taaagcactt
       61 agtccaatga acaatatgga ttaggtgctt ttttattggt agacagtgga attactaatt
      121 gagtaatagt ttgttattgg cttactgagc gcattatcaa tcgcttattt tatttttaca
      181 taaccgtaaa caatcagtat tcataccaga agttatcatg tgccagcatg ataattgctt
      241 atggcttatc atgtagattt tgatttaaat ttaatataca tagacaaaat gttgttgtca
      301 ctataaaatg gggtggtgag agagttagat agatggtggc tatcttagta taaagtgagg
      361 tgatgcctat gagtgcatca acaaaatctt tagaaaggag agccttaatg attagtattg
      421 cagatgcact aatgattatg ctagggtttg gtacatttac tgtagccctc atacatttag
      481 ttgtctcaat cgataaaaaa tcaaaaaaat aaccatcact agctttggag aatgtgatgg
      541 ttatttaata atcaaataat aatccaccgt ctttt
//
LOCUS       DANHOL010000331          566 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.346, whole genome shotgun sequence.
ACCESSION   DANHOL010000331 DANHOL010000000
VERSION     DANHOL010000331.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 566)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 566)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..566
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.346"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            <1..230
                     /locus_tag="PTC08_002502"
     CDS             <1..230
                     /locus_tag="PTC08_002502"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683928.1"
                     /translation="FMASRKNPIWGIIIPVIYTIAMIYLYAIDYYNSFLSFILFFALG
                     LIFLIEEWNRGRKDRKKKEKYELNKMRKKDL"
     gene            complement(277..429)
                     /locus_tag="PTC08_002503"
     CDS             complement(277..429)
                     /locus_tag="PTC08_002503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_143212018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aureocin A53 family class IId bacteriocin"
                     /protein_id="HDK5683929.1"
                     /translation="MAGLLRYLLSQGRALYNWAKSHIGKVWEWLKSGATYEQIKEWIE
                     NALGWR"
BASE COUNT          210 a           87 c           77 g          192 t
ORIGIN      
        1 actttatggc tagtagaaaa aatcctatat ggggtataat tattcctgta atttatacga
       61 ttgccatgat atatctttat gctatagatt attataatag ctttttatct ttcatacttt
      121 tctttgcttt aggattaata ttcttaatag aagaatggaa ccgtggtaga aaagatagaa
      181 agaaaaaaga aaaatacgaa ttgaataaaa tgagaaaaaa agatttataa aaaagtggag
      241 gaagccgcac acttctctcc acttttaatt aaagacttat ctccaaccta atgcgttttc
      301 aatccattct ttaatttgtt catatgtagc tcctgattta agccactccc aaacttttcc
      361 aatatgactt tttgcccaat tgtataaggc gcgaccttga cttaaaagat aacgtagtaa
      421 tccagccata atcaaaaacc tccgtaaatt tatattatac agtttaaact gtataatata
      481 aatttaccac aagtgttatt tttttcaata cgatgggagg atgttttttg aaagaaccaa
      541 aaaaaactat atctaaaaaa gctatc
//
LOCUS       DANHOL010000332          547 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.349, whole genome shotgun sequence.
ACCESSION   DANHOL010000332 DANHOL010000000
VERSION     DANHOL010000332.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 547)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 547)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..547
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.349"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            <1..390
                     /locus_tag="PTC08_002504"
     CDS             <1..390
                     /locus_tag="PTC08_002504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683930.1"
                     /translation="KLAIAGAVLTGLASTVTLYQDSGVNYEAKAQEENPNSQHFKKNV
                     DDKELDFTDILSKDKITAKELSDKIAKELNEKGLDPKEYSFTLKVTTEDGGTIQGGGK
                     VGDVPNNQSKEFNPNKDKITEFEITKS"
BASE COUNT          220 a           78 c          101 g          148 t
ORIGIN      
        1 aaattagcta ttgcaggtgc tgtattaaca ggtttagcta gtactgtcac gttataccaa
       61 gactctggag ttaattatga agcaaaagca caagaggaaa acccgaatag tcaacacttt
      121 aagaaaaatg tagatgataa agaactcgat tttacagata tccttagcaa agataaaatt
      181 acagctaaag agttatccga taagattgca aaagaattaa atgagaaggg cttggaccca
      241 aaagaatata gttttacact taaagtaact accgaagatg gtggaacaat tcaaggtggc
      301 ggaaaagtcg gagatgttcc aaataatcaa tcaaaggaat tcaaccctaa taaagataaa
      361 attacagaat ttgaaatcac taaaagttaa taataaaact taccattttt aattttaagg
      421 cgataagaac actaagggcc gtgagcacct ggatttattc aggtgttagc ggtcctcaat
      481 ttatgttaat cagtagtctg agatgaatga aaaatctttc taaaaagcaa aatttttaca
      541 tagagtt
//
LOCUS       DANHOL010000333          547 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.350, whole genome shotgun sequence.
ACCESSION   DANHOL010000333 DANHOL010000000
VERSION     DANHOL010000333.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 547)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 547)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..547
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.350"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(73..387)
                     /locus_tag="PTC08_002505"
     CDS             complement(73..387)
                     /locus_tag="PTC08_002505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683931.1"
                     /translation="MTRKKVTLIAIAVLLVTMVVYISISLINLNQKEDYYGQVTHKHD
                     SIALYSENDKHTVYLDKDIEQMKEGDWIKVTMTDQKGVILNVEPIAENDVPNKVLTTI
                     KG"
BASE COUNT          170 a          109 c           78 g          190 t
ORIGIN      
        1 tgacacatac aataaaaaaa tgcgtatgac caagcatcca tcgttcactt gatcctacgc
       61 atagatatag aactaacctt ttattgttgt taatacttta ttcggaacat cattttcagc
      121 tataggttcg acattcaaaa taacgccttt ttgatcggtc atcgtcactt taatccagtc
      181 gccctctttc atttgttcaa tatctttatc taaatatacc gtatgcttat cattttcgga
      241 atacaaagcg atactgtcat gtttatgcgt cacttgacca taataatctt ctttttgatt
      301 caaattgatt aaacttattg aaatatagac caccatagtc accaataata ccgctatcgc
      361 aatcagtgta acttttttgc gcgtcatcgt tgtaactcct ttagtcaaac aagataatac
      421 tactatatcc gagttggtga taaaggtcat agcccctgag actgaaatat tcataccgct
      481 agaaaagtag gaaactggta aacaatgctt ttttatcagt tcgttttata tactaggttc
      541 tgagtta
//
LOCUS       DANHOL010000334          546 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.351, whole genome shotgun sequence.
ACCESSION   DANHOL010000334 DANHOL010000000
VERSION     DANHOL010000334.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 546)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 546)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..546
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.351"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            204..485
                     /locus_tag="PTC08_002506"
     CDS             204..485
                     /locus_tag="PTC08_002506"
                     /inference="COORDINATES: protein motif:HMM:NF013677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
                     /protein_id="HDK5683932.1"
                     /translation="MARARRTFTPEFKLQMVRLFENGKSKSDIVREYDLTPSALDKWI
                     KNHQNSGSFNAADNLTDEEKELRKLRKENQQLKMENDILKQAALIMGRK"
BASE COUNT          208 a           69 c          110 g          159 t
ORIGIN      
        1 aagagtatgg acttttgctt taaaattata actatggaaa ttatgagttt tagtgagttt
       61 tgtatggcac atgagaatag aagggtacct aactggatga ttcgagattt taatggtttg
      121 aatgatactg aatcggctac acttaattgg acaactcccc tgaggggatg tattgttaaa
      181 ttaagaaagt aggcgattta tttatggcta gagctagaag aacatttaca ccagaattta
      241 aacttcaaat ggtacgatta tttgaaaatg gaaaatctaa atcagatatt gttagagaat
      301 atgatttaac accttcggcg ttagataaat ggattaagaa tcatcaaaat agtggttcgt
      361 ttaatgctgc tgataatcta accgatgaag aaaaagagct ccgaaaattg cgtaaagaaa
      421 atcaacaatt aaagatggaa aatgatattt taaagcaagc agcgctgatc atgggacgaa
      481 aatagaagtc attcaacaga atgcacatca atattcagta tcagcaatgt gcaaagtcct
      541 aaaaat
//
LOCUS       DANHOL010000335          536 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.353, whole genome shotgun sequence.
ACCESSION   DANHOL010000335 DANHOL010000000
VERSION     DANHOL010000335.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 536)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 536)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..536
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.353"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            6..>536
                     /locus_tag="PTC08_002507"
     CDS             6..>536
                     /locus_tag="PTC08_002507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HDK5683933.1"
                     /translation="MCNDISEILGIKVKNLKITQNLGLHVHKNVQALFYEGQLTYHPS
                     ACECCGIKNDNHLIIKHGFRKTNVYMGLIFERPAYLKLKKQRFYCKACQRTFTAETPY
                     IQPRCTISNEVKRMMTWKLSKVTSEKDIAESLCVSPSTVHRHLKVVSNSVKTHAHYVL
                     PEHLAFDEFKSTKDVEG"
BASE COUNT          188 a           94 c           94 g          160 t
ORIGIN      
        1 tgcctatgtg taatgatata tcagaaatac taggaattaa agttaaaaat ttaaaaatca
       61 ctcaaaattt aggattacat gttcataaaa acgtacaggc attattctat gaaggtcaat
      121 tgacttatca tcccagtgct tgtgagtgtt gtggaattaa aaatgataac catttaatta
      181 ttaaacatgg ctttcgtaaa acgaatgttt atatggggtt aatttttgaa agacctgcct
      241 atttaaaatt gaagaaacag cgcttttact gtaaagcttg ccaacgaacc tttacagctg
      301 aaacgcccta tattcaaccc cgatgtacca tctcaaatga ggtcaaacgc atgatgacct
      361 ggaaactatc aaaagttaca tctgaaaaag atatcgctga aagtctatgt gtatcgcctt
      421 caactgtcca tcgccattta aaagtagtaa gtaattcggt gaagacacac gcacattacg
      481 ttttacctga gcacttagct tttgacgaat tcaagtcgac gaaagatgtc gaaggt
//
LOCUS       DANHOL010000336          520 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.354, whole genome shotgun sequence.
ACCESSION   DANHOL010000336 DANHOL010000000
VERSION     DANHOL010000336.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 520)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 520)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..520
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.354"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(<1..>520)
                     /locus_tag="PTC08_002508"
     CDS             complement(<1..>520)
                     /locus_tag="PTC08_002508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HDK5683934.1"
                     /translation="YIFFPIVLTLFFKIFKRKRWIVLAFFIISIASAVLMFYMTTPDT
                     NHARTYFGTDTRLQTLLLGVIFAFIWPAFRLKEHPPKFAANIIDSLGLIALFALLTLF
                     FFVNEQQFILYSGGFYCISLLTLILIASLVLPNGRLAKVMSNPVFLYIGKRSYSLYLW
                     HYVIVTFVHQYFV"
BASE COUNT          203 a           80 c           91 g          146 t
ORIGIN      
        1 acaaagtatt gatgtacaaa agtcacaatg acgtaatgcc ataaatataa actgtatgac
       61 cttttaccga tatacaaaaa tacagggtta ctcatcactt tagctaatcg cccattcgga
      121 agtacaaggc ttgcaatgag tatcaatgtg agtaatgaaa tacagtaaaa tccaccgcta
      181 taaaggatga attgctgttc gtttacaaaa aagaataatg taagtaaagc gaataatgcg
      241 ataagaccta gactatcgat aatgttagcc gcaaatttag gcggatgttc ttttaatcga
      301 aaagctggcc atataaatgc aaaaatgaca cctaataata atgtttgtaa acgggtgtct
      361 gtcccaaaat atgtacgtgc atggttcgta tcgggtgttg tcatataaaa cattaatact
      421 gccgacgcaa tagaaataat gaaaaatgcg agtacaatcc atctttttct tttaaatatt
      481 ttaaaaaata acgttaaaac aattgggaaa aagatataga
//
LOCUS       DANHOL010000337          515 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.355, whole genome shotgun sequence.
ACCESSION   DANHOL010000337 DANHOL010000000
VERSION     DANHOL010000337.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 515)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 515)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..515
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.355"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(<1..>515)
                     /locus_tag="PTC08_002509"
     CDS             complement(<1..>515)
                     /locus_tag="PTC08_002509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020220298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683935.1"
                     /translation="NVQEIIDKFYLYGKRRGFHELKEGKVVREYGSETVFNMSAISER
                     IDLFDELSSTESLEKYVTKQLSYFPNKLDGVGFNRLTNPMEIGLSFLVKNSKYPIDIV
                     NQSLGFIETIGLLKDKMYIRCDKEVDFLGWYVNTGIPKDNIYEWENIEKFHIGKHRPT
                     GNYSYLSISIL"
BASE COUNT          160 a           99 c           63 g          193 t
ORIGIN      
        1 ttaagatact tatagacaaa taagaataat ttccagttgg tcgatgttta ccaatatgaa
       61 atttttcaat attttcccat tcatatatgt tatctttcgg aatccccgta ttgacatacc
      121 atcccaaaaa atcgacttct ttatcacatc taatatacat tttgtctttg agcaacccta
      181 tagtttctat aaaccctaac gattgattta cgatatctat cggatattta ctgtttttaa
      241 ctagaaatga tagtcctatt tccattggat tggttaacct attaaaccca acgccatcta
      301 gcttatttgg aaaataagat aattgctttg ttacatactt ttctagagat tctgttgaag
      361 agagttcatc aaacaaatca atgcgttctg atatagcaga catgttaaat actgtctcgg
      421 aaccatattc tctaactact tttccttctt ttagttcatg aaatccccta cgctttccat
      481 agaggtaaaa tttatcaatt atctcttgta cgttc
//
LOCUS       DANHOL010000338          514 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.356, whole genome shotgun sequence.
ACCESSION   DANHOL010000338 DANHOL010000000
VERSION     DANHOL010000338.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 514)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 514)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..514
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.356"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(181..>514)
                     /locus_tag="PTC08_002510"
     CDS             complement(181..>514)
                     /locus_tag="PTC08_002510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683936.1"
                     /translation="YDMINEEALKQAQPKTTTQSTKATSRTHNENIFSQYDMINEEAL
                     KQAQPKTTTQSTKATSRTHNENIFSQYDMINEEALKQAQPKTTTQSTKATSRTHNENV
                     FSAYDMIN"
BASE COUNT          139 a           67 c           98 g          210 t
ORIGIN      
        1 agacgtaagc agtatgtaat caatatagta tcagatatgt taggtaaaac gaagcaaagc
       61 cacatcatgt cataaaagga caagatgtgg cgatatttaa taattaatta aacataataa
      121 tcacgataac tctaaattta cacgcttaat aaaataacac atataatata tgctatcaaa
      181 ttagttaatc atgtcatatg ctgaaaaaac gttctcgttg tgtgtacggc tcgttgcttt
      241 tgttgattgt gttgttgttt taggttgtgc ttgttttaac gcttcttcat tgatcatatc
      301 gtattgtgaa aaaatgtttt cattgtgtgt acggctcgtt gcttttgttg attgtgttgt
      361 tgttttaggt tgtgcttgtt ttaacgcttc ttcattaatc atatcgtatt gtgaaaaaat
      421 gttctcgttg tgtgtacggc tcgttgcttt tgttgattgt gttgttgttt taggttgtgc
      481 ttgttttaac gcttcttcat taatcatatc gtat
//
LOCUS       DANHOL010000339          512 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.357, whole genome shotgun sequence.
ACCESSION   DANHOL010000339 DANHOL010000000
VERSION     DANHOL010000339.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 512)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 512)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..512
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.357"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            48..>512
                     /locus_tag="PTC08_002511"
     CDS             48..>512
                     /locus_tag="PTC08_002511"
                     /inference="COORDINATES: protein motif:HMM:NF015598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MAP domain-containing protein"
                     /protein_id="HDK5683937.1"
                     /translation="MKAKKLLATGLALGILTSTASLYTDHEAQAASKQHHQVKTSSIP
                     YSTTIDGATPFVQSYLKLSNENVSNFKQLNQKVKSTLKQDYKISATQIEKSKTAQYTV
                     TWKNGKKQTISLKNDAALSAQKLNVKDIQQIDIVVKNQTAKQDVKSVPYTVTI"
BASE COUNT          221 a           83 c           75 g          133 t
ORIGIN      
        1 tatagttggt attgtaagaa atgatttaaa aaaaggagtt attcattatg aaagcaaaaa
       61 aattattagc tacaggttta gcattaggaa ttttaacatc tacagcatct ttatacactg
      121 atcatgaagc acaggcagcg agcaaacaac atcatcaagt taagacaagt agtattccgt
      181 attcaacaac aattgacggc gcaacacctt ttgtccaatc atatcttaaa ttatcaaatg
      241 aaaacgttag caactttaag caattaaatc aaaaagttaa atcaacttta aagcaagatt
      301 acaaaatttc agctactcaa atagaaaaat ctaaaacagc gcaatatact gttacatgga
      361 aaaacggcaa aaagcagaca ataagtttga aaaatgatgc agcactatca gcgcaaaagc
      421 ttaatgtcaa agatattcag caaattgata tcgtagttaa aaaccaaact gcaaaacaag
      481 atgtaaaaag tgttccgtat actgtcacaa ta
//
LOCUS       DANHOL010000340          496 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.358, whole genome shotgun sequence.
ACCESSION   DANHOL010000340 DANHOL010000000
VERSION     DANHOL010000340.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 496)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 496)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..496
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.358"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            135..376
                     /locus_tag="PTC08_002512"
                     /pseudo
     CDS             135..376
                     /locus_tag="PTC08_002512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002425012.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-binding protein"
     gene            425..>496
                     /locus_tag="PTC08_002513"
     CDS             425..>496
                     /locus_tag="PTC08_002513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001814874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA methyltransferase attenuation leader
                     peptide"
                     /protein_id="HDK5683938.1"
                     /translation="MLVFQMRNVDKTSTVLKQTKNSDY"
BASE COUNT          207 a           57 c           98 g          134 t
ORIGIN      
        1 tctttctcaa aataaacata aaagcccttt aaagagggct tttatatatt aatcacaaat
       61 cacttatcac aaatcacaag tgatttgtga ttgttgatga taaaataaga ataagaagaa
      121 atagaaagaa gtgagtgatt gtgggaaatt taggcgcaca aaaagaaaaa cgaaatgata
      181 caccaatcag tgcaaaaaaa gatataatgg gagataagac ggttcgtgtt cgtgctgact
      241 tgcaccatat cataaaaatc gaaacagcaa agaatggcgg aaacgtaaaa gaagttatgg
      301 aaataagact tagaagcaaa cttaagagtg tgttgatagt gcagtatctt aaaattttgt
      361 gtataatagg aattgaagtt aaattagatg ctaaaaattt gtaattaaga aggagggatt
      421 cgtcatgttg gtattccaaa tgcgtaatgt agataaaaca tctactgttt tgaaacagac
      481 taaaaacagt gattac
//
LOCUS       DANHOL010000341          494 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.359, whole genome shotgun sequence.
ACCESSION   DANHOL010000341 DANHOL010000000
VERSION     DANHOL010000341.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 494)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 494)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..494
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.359"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(240..440)
                     /gene="cspA"
                     /locus_tag="PTC08_002514"
     CDS             complement(240..440)
                     /gene="cspA"
                     /locus_tag="PTC08_002514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015900294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold shock protein CspA"
                     /protein_id="HDK5683939.1"
                     /translation="MKQGTVKWFNAEKGFGFIEVEGENDVFVHFSAINQEGYKSLDEG
                     QSVEFEVVEGDRGPQAANVVKL"
BASE COUNT          168 a           87 c           75 g          164 t
ORIGIN      
        1 aatgtttaac atgttactgc aaaatgaaat ccatgtcgtt tagttgtgag ttctaaacta
       61 tgaaatatca ttgattaagt gacccaattt tgaatgagaa attgataatc gagatgaaat
      121 aatgaggcac atattaagag gtattttcat aacaggataa gataaaaaca tttaaaaaaa
      181 caaaaaaaca gcgaagcgag cttcactgct tttttctaag tcaatattgc atctatttat
      241 tatagtttta caacgtttgc agcttgagga ccgcggtcgc cttcaactac ttcaaattca
      301 actgattgac cttcatctaa tgatttgtaa ccttcttggt tgattgcaga gaagtgtacg
      361 aatacgtcgt tttctccttc tacttcgata aaaccaaaac ctttttcagc gttaaaccat
      421 tttactgtac cttgtttcat aatctgtgaa acctccaaga ctaaaattca atatgcgcta
      481 ttcgcatatt acaa
//
LOCUS       DANHOL010000342          475 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.364, whole genome shotgun sequence.
ACCESSION   DANHOL010000342 DANHOL010000000
VERSION     DANHOL010000342.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 475)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 475)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..475
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.364"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            <1..>475
                     /locus_tag="PTC08_002515"
     CDS             <1..>475
                     /locus_tag="PTC08_002515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683940.1"
                     /translation="YDYPVLDYSTPASYVRDQKTMKKFINQEDEPSIYKEVTGEKVNL
                     PKVRTHSSKNFYEIFDVEKQLNTELDLQLLSDILFYTYGQISSLKFPVTQKLIRRTSP
                     SGGARHPSECYIAILNSGLLKKGIYHYSVKNHCLELIKEGDFKEYLYESCYGLNQF"
BASE COUNT          175 a           74 c           81 g          145 t
ORIGIN      
        1 tatgactatc cagttcttga ttattcaaca ccagcctctt atgttcgcga tcaaaagact
       61 atgaaaaaat ttataaatca agaagatgaa ccgtctatct acaaagaagt tacaggagaa
      121 aaagttaact taccaaaagt caggacgcat agtagtaaaa acttttatga aatattcgat
      181 gttgagaagc aactaaatac cgaacttgat ttacaattat tgagtgacat tcttttctac
      241 acttacggac aaattagcag tttgaaattt cctgtgactc agaaactaat tagaaggact
      301 agtccttcgg gaggggctag gcatccctca gaatgttata tagcaatctt aaattccggt
      361 ttattaaaga aaggaattta tcattattct gttaaaaacc attgtttaga gcttataaaa
      421 gaaggggatt tcaaagaata cttgtatgaa tcatgttacg gactaaatca atttg
//
LOCUS       DANHOL010000343          471 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.367, whole genome shotgun sequence.
ACCESSION   DANHOL010000343 DANHOL010000000
VERSION     DANHOL010000343.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 471)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 471)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..471
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.367"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            <1..>471
                     /locus_tag="PTC08_002516"
     CDS             <1..>471
                     /locus_tag="PTC08_002516"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683941.1"
                     /translation="DIDKMKLNLLPIEMYRYSVVIPKTNEQVAFTDLSNFKYDSLAAE
                     RDDFSQKNTQLGSQALVSLLQNKLGNEQKIKVEASYGRFFEDLKEISNLEGIFNWQEN
                     SDIENAKEFFEQISLLPNMPSISSLLNNVKLGIGDEYLHSQGLGYRNLIYLLVMM"
BASE COUNT          181 a           56 c           86 g          148 t
ORIGIN      
        1 gatatagata aaatgaagtt aaatttatta ccgatagaaa tgtacagata ttcagtagta
       61 atacctaaaa caaatgaaca agtagcattt accgatttga gtaatttcaa gtatgattca
      121 ctagctgcag aaagagatga tttttctcaa aaaaatactc aattaggttc acaagcctta
      181 gtttctttac ttcagaataa acttggtaat gagcaaaaga taaaagtgga agcatcttat
      241 gggaggtttt ttgaggattt aaaagagatt agtaatttgg aggggatttt caattggcaa
      301 gaaaactctg atatagaaaa tgccaaagaa ttttttgaac aaataagctt attacccaac
      361 atgcctagta taagctcact attaaataac gttaaattag gaattggtga tgaatatcta
      421 catagtcaag ggttaggtta tcgaaacctg atatatttac ttgtgatgat g
//
LOCUS       DANHOL010000344          454 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.371, whole genome shotgun sequence.
ACCESSION   DANHOL010000344 DANHOL010000000
VERSION     DANHOL010000344.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 454)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 454)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..454
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.371"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            <1..417
                     /locus_tag="PTC08_002517"
     CDS             <1..417
                     /locus_tag="PTC08_002517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antibiotic biosynthesis monooxygenase"
                     /protein_id="HDK5683942.1"
                     /translation="HKDFLYQIEEDGTTVTIYKNNDTKTYTAIEATGELTPHHFCVLN
                     YIKVDLNQSETFEERFLSRTADLNDVHGFISLRVLRPWDPQNHYVVISLWDDRKSFEV
                     WQASEQPLNYHHQWNGALDEEIVNSDLSYYIKFDAQ"
BASE COUNT          154 a           72 c           86 g          142 t
ORIGIN      
        1 cataaagatt ttctttatca aattgaagaa gatgggacaa cagtgaccat atataaaaat
       61 aatgatacca aaacatatac tgctatagaa gcgacaggcg agctcacacc gcatcatttt
      121 tgtgtcttaa attatattaa agtagatctg aatcaaagtg aaacatttga ggaacgcttt
      181 ctaagtcgca cagcagattt gaatgatgta catggcttca tatcgctacg tgttttgaga
      241 ccctgggacc cacaaaatca ttatgttgtg atttcattat gggatgaccg taaaagtttt
      301 gaagtgtggc aagcttctga gcaaccattg aattaccatc atcaatggaa tggcgcatta
      361 gatgaagaga ttgtgaattc cgatttgtca tattatatta aatttgatgc acaatgatgt
      421 gtatagcgat ttttcaaaat tttaataacc tgtc
//
LOCUS       DANHOL010000345          452 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.372, whole genome shotgun sequence.
ACCESSION   DANHOL010000345 DANHOL010000000
VERSION     DANHOL010000345.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 452)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 452)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..452
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.372"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            5..199
                     /locus_tag="PTC08_002518"
     CDS             5..199
                     /locus_tag="PTC08_002518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001289724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683943.1"
                     /translation="MSEITKTIEILLANNTPYSISKNSGIPRQTVTDLKNGKSKIEDA
                     RFRTIKALYEYQKQLEKENE"
     gene            complement(353..426)
                     /locus_tag="PTC08_002519"
     tRNA            complement(353..426)
                     /locus_tag="PTC08_002519"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(390..392),aa:Arg,seq:tct)
BASE COUNT          177 a           75 c           84 g          116 t
ORIGIN      
        1 caaaataagc gaaatcacta aaactattga aatattgttg gcaaataata cgccatatag
       61 tatttctaaa aattctggaa taccaagaca aacagttaca gatttaaaaa atggcaaatc
      121 gaaaattgaa gatgcgcgat ttagaacgat taaagcatta tatgaatatc aaaaacaact
      181 agaaaaagaa aacgaatgaa taatccccgc ttgcaatagg tggggtgtaa taacagggac
      241 tcgggtccct aaaaattagt tttatatggt gtgttattga tagacaaaat aaaaagaacc
      301 ccgtcgttac aggattctta atattaaaaa gtgcttaaat ttcagtaatt agcgtcctgg
      361 gagggattcg aacccccgac cgatggctta gaaggccatt gctctatcca gctgagctac
      421 caggacattt tcaacacaag gataattata gc
//
LOCUS       DANHOL010000346          449 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.373, whole genome shotgun sequence.
ACCESSION   DANHOL010000346 DANHOL010000000
VERSION     DANHOL010000346.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 449)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 449)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..449
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.373"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(<1..>449)
                     /locus_tag="PTC08_002520"
     CDS             complement(<1..>449)
                     /locus_tag="PTC08_002520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015728741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HDK5683944.1"
                     /translation="AFIGESGSGKTTLAKMMVSFFEPSKGKITLGGLDITNINKSVLR
                     QQIIYIPQQTYIFNGTILENLLLGVVKEVTQKDIDSAIKMAELKSFIDSLPLGLDSVL
                     SSDFSALSGGQRQKIALARALLTNSSILIMDEATSNIDILTERKIIN"
BASE COUNT          144 a           86 c           60 g          159 t
ORIGIN      
        1 attaataatt tttctctccg tgagtatatc aatattactc gttgcttcat ccattatcaa
       61 tatagaagaa tttgttaata gtgctcttgc taaagctatc ttctgccgct gacctcctga
      121 caaagcagaa aaatcagaac ttaatacact atcaagtcca agtggtaagc tatcaataaa
      181 ggattttagt tcagccattt taatagcact atctatgtcc ttttgcgtaa cctctttaac
      241 tacccctaat aaaagatttt caagtatagt tccattaaaa atataagttt gttgtggaat
      301 gtatataatc tgctgtcgta aaacagattt attgatattt gttatgtcca atccacctag
      361 tgttatttta ccctttgaag gttcaaaaaa actaaccatc attttcgcca aagttgtttt
      421 acctgatcca gactctccaa taaaggcta
//
LOCUS       DANHOL010000347          443 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.377, whole genome shotgun sequence.
ACCESSION   DANHOL010000347 DANHOL010000000
VERSION     DANHOL010000347.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 443)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 443)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..443
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.377"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
BASE COUNT          144 a           89 c           59 g          151 t
ORIGIN      
        1 cgtgacacag gagaacgcaa aagtatccct gtcaaatctt ttatgcgttc aaacgcattt
       61 tctttttcag cttcataata ctttttgact gttctgggat cacaatgata ctgcataccc
      121 agctcagcat aatttggttt tattcctttc atgatgtaaa atagcactct ttcgtatata
      181 gcaagtctca atcaaacaac ctccgttcaa agattgagtt aagacatgaa tatatatttt
      241 agaaaataaa aaatatagga aaaaagcatt ttgattccgc cattttccta cattttataa
      301 ccgccgttta cacatcttca atgaacgcta ctgtccactt gaataccatt ctaattttcc
      361 caattgtata cggaaaatct ctattttatc ttacctaaga actttttcga gactgtgcag
      421 ataggttatt catcaaaaaa tag
//
LOCUS       DANHOL010000348          441 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.378, whole genome shotgun sequence.
ACCESSION   DANHOL010000348 DANHOL010000000
VERSION     DANHOL010000348.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 441)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 441)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..441
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.378"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            79..155
                     /locus_tag="PTC08_002521"
     tRNA            79..155
                     /locus_tag="PTC08_002521"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:113..115,aa:Ile,seq:gat)
BASE COUNT          151 a           71 c           93 g          126 t
ORIGIN      
        1 attaggtgat aagcgaatta acgtgacata ttgtattcag ttttgaatgc tcattcattg
       61 agaattcaaa attcaaatgg gcctatagct cagctggtta gagcgcacgc ctgataagcg
      121 tgaggtcggt ggttcgagtc cacttaggcc caccatttga aattgtacat tgaaaactag
      181 ataagtaagt atagatttta ccaagcaaaa ccgagtgaca agcgtttaaa agcttgaaac
      241 aaaaaattat cgctagtcgt caaatgacga ttcacataat taataactgg tgatggtaaa
      301 catcgtattt ttgattgtac aaacgtttat gaaaacgctt gtcagtcaac gcatttcttg
      361 atgagcgcag tgaagtttac ttctcgtaaa tgaacaagcg aagaaagaaa taaggtagaa
      421 tgcgagcgtt tatcataacg t
//
LOCUS       DANHOL010000349          440 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.379, whole genome shotgun sequence.
ACCESSION   DANHOL010000349 DANHOL010000000
VERSION     DANHOL010000349.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 440)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 440)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..440
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.379"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            69..263
                     /locus_tag="PTC08_002522"
                     /pseudo
     CDS             69..263
                     /locus_tag="PTC08_002522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000691527.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          151 a           66 c           82 g          141 t
ORIGIN      
        1 tgaaataaca aaaatgattg aaaaagaaga tcttgaaaga ttaatatcaa aaacaatgac
       61 attattcaat tagaaaagaa aaacaaaatg cacctcaagc agtagggttg agatggaatg
      121 gtaaagcata tacatgtagt atgggaaggt tttatgcatg tgctcattat tgcggaatgt
      181 gagcaattgt aagcccaata gcaggcgcag ggtgtgaagt gatttgtggt gctgcattcg
      241 caacagcatg cgctcttaac taatttattt caattacaat attagcagcg ctgttttgac
      301 ttctgtttag ggttgattat catctcacat agcctaattt taattgtcca aatgacttta
      361 catcgtcttt tctattaatg tcaccatata aaagaaacac tttttatttg gagctccatc
      421 atattgctat atatttaacg
//
LOCUS       DANHOL010000350          434 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.380, whole genome shotgun sequence.
ACCESSION   DANHOL010000350 DANHOL010000000
VERSION     DANHOL010000350.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 434)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 434)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..434
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.380"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(243..357)
                     /gene="rrf"
                     /locus_tag="PTC08_002523"
     rRNA            complement(243..357)
                     /gene="rrf"
                     /locus_tag="PTC08_002523"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
BASE COUNT          139 a           80 c           96 g          119 t
ORIGIN      
        1 cacaagtatc agttaggttg aagttgaaaa catgtcatag tgacaagttt tgcgctctaa
       61 gaagatattg taaacaatcg ttacacactg ggaggatgac gggaatatag gcaatagatg
      121 aataaaggca ttgattgagg gggatcacat ttcacctgta tgtgtgatgc ggatgacagg
      181 aaccctttac ggtattaaaa aagccccgaa acaataatga ttgcttcgaa gcttttgaaa
      241 taacctggca ccgtcctact ctcgcggaac gtaagtccga ctaccatcgg cgctaaagag
      301 cttaacttct gtgttcggca tgggaacagg tgtgacctct ttgccattgg caccagatta
      361 agttgttgaa tgtcatacat tcaaaactag atagtaagta tatttatcac aagcattacc
      421 ttatgaacaa ttat
//
LOCUS       DANHOL010000351          431 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.381, whole genome shotgun sequence.
ACCESSION   DANHOL010000351 DANHOL010000000
VERSION     DANHOL010000351.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 431)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 431)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..431
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.381"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            <1..>431
                     /locus_tag="PTC08_002524"
     CDS             <1..>431
                     /locus_tag="PTC08_002524"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683945.1"
                     /translation="LEGEWYVNFQIVLKRKCCVLTNTHRVVLGNKREIDISIDKLKSF
                     ENNQVESKIVYSTIDEELWRRRNGKLSQKDYITCDKTISQFFTEYYKVQNQQDKRKKD
                     IIFGVLYNSDVSPIKREDKRGKKPDELTIIIRMIVLSVLKN"
BASE COUNT          175 a           54 c           85 g          117 t
ORIGIN      
        1 ttagagggtg aatggtacgt taactttcaa attgtattaa aaaggaagtg ttgcgtactg
       61 accaatacac acagagttgt tttaggaaac aaaagagaga ttgacatttc aattgacaag
      121 ctcaagtcat ttgaaaataa tcaggttgaa tcaaagatag tatactcaac aattgatgag
      181 gagctgtgga gacgtcgaaa tggtaagcta agccaaaagg attatattac ttgtgacaag
      241 acaataagtc aattttttac agaatattat aaggttcaga atcaacaaga caaacgcaaa
      301 aaggatataa tatttggtgt tttatataat tctgacgtaa gcccaattaa aagggaagat
      361 aaacgaggca aaaaaccaga cgaactgaca attattatca gaatgattgt attatcggta
      421 cttaagaata a
//
LOCUS       DANHOL010000352          409 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.385, whole genome shotgun sequence.
ACCESSION   DANHOL010000352 DANHOL010000000
VERSION     DANHOL010000352.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 409)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 409)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..409
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.385"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(189..371)
                     /locus_tag="PTC08_002525"
                     /pseudo
     CDS             complement(189..371)
                     /locus_tag="PTC08_002525"
                     /inference="COORDINATES: protein motif:HMM:NF024729.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
BASE COUNT          127 a           72 c           66 g          144 t
ORIGIN      
        1 tgcttatttt ttccagagaa ttttttacat gcacttttta ctccatatct atacatatct
       61 tgggcaaaag ctgtggtgga cctatgtcaa gaatacggac acagaaaaaa agagaattct
      121 accgcgcttc gcttgctagc ctagccatca tgtactttta aaaatcaaaa agtacattct
      181 gagctgggtt attttgttgc gtatttcttc tcaaattcaa tggggctcat atcatttaac
      241 gttgaatgca cccttttgga attgtagaaa gtaaggatat actccacaat gctaaacatc
      301 gcttcattcc tcgtttgata gtcctgatga tgaatcaatt cttttttgat gatactgtga
      361 aaagattcta tacattttaa taatgagaaa aattaaattt gctcatata
//
LOCUS       DANHOL010000353          393 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.389, whole genome shotgun sequence.
ACCESSION   DANHOL010000353 DANHOL010000000
VERSION     DANHOL010000353.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 393)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 393)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..393
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.389"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(<1..>393)
                     /locus_tag="PTC08_002526"
     CDS             complement(<1..>393)
                     /locus_tag="PTC08_002526"
                     /inference="COORDINATES: protein motif:HMM:NF017885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ImmA/IrrE family metallo-endopeptidase"
                     /protein_id="HDK5683946.1"
                     /translation="SLRRLKFTLAHELCHHIKDFEIQQQVTLNEDLDIPYSKVEKFAN
                     AFASYLLVPHLELKYKLDEFKGKQKLSDADIICLADFFEVSKSMITYRLDRLNISYDL
                     GSGNLSTDIDLKIKLQYVKGVFSNSKKLF"
BASE COUNT          136 a           66 c           47 g          144 t
ORIGIN      
        1 aaacagtttt ttagaattcg aaaaaacacc tttgacatat tgaagtttta tctttaaatc
       61 tatatcagta cttaaattcc cactacctaa atcatagcta atatttaatc ggtcaagcct
      121 gtaggtaatc atagatttac ttacttcaaa aaagtctgct aaacaaatta tatctgcatc
      181 gctcaatttt tgttttccct taaattcatc taatttatat ttcaactcaa ggtgtggaac
      241 caaaaggtac gaagcaaatg cattggcaaa cttttcaact ttactgtacg gaatatctaa
      301 atcttcattt aatgttactt gttgttgtat ttcaaagtct ttaatatggt gacataattc
      361 atgagctaaa gtaaatttca aacgtcttaa act
//
LOCUS       DANHOL010000354          386 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.395, whole genome shotgun sequence.
ACCESSION   DANHOL010000354 DANHOL010000000
VERSION     DANHOL010000354.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 386)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 386)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..386
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.395"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(122..>386)
                     /locus_tag="PTC08_002527"
     CDS             complement(122..>386)
                     /locus_tag="PTC08_002527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="family 1 glycosylhydrolase"
                     /protein_id="HDK5683947.1"
                     /translation="EFINDTVQDDARIDYVKQHLEVIADAIEDGANVKGYFIWSLMDV
                     FSWSNGYEKRYGLFYVDFETQQRYPKKSAYWYKKLAETRIIES"
BASE COUNT          127 a           75 c           57 g          127 t
ORIGIN      
        1 agagaaactc ccctaatgtt aaaacaaggt ttaacgatta tagacgttca gaatgattac
       61 tttgataatg gtaaaatgca tcaaaaaacc aagacccgtt taaaagtctt ggtttttcat
      121 actatgattc aatgattcgt gtttctgcga gtttcttata ccaatatgca ctctttttcg
      181 gatagcgttg ctgtgtttca aagtcaacat agaataaacc ataacgtttt tcatagccat
      241 tggaccatga gaacacgtcc attaatgacc aaatgaaata accttttaca ttagctccat
      301 cctcaatcgc atctgcaatc acttctaaat gttgtttgac ataatcaata cgtgcatcgt
      361 cttgaactgt atcattaata aattcg
//
LOCUS       DANHOL010000355          384 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.396, whole genome shotgun sequence.
ACCESSION   DANHOL010000355 DANHOL010000000
VERSION     DANHOL010000355.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 384)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 384)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..384
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.396"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
BASE COUNT          122 a           73 c           68 g          121 t
ORIGIN      
        1 tatacacggt ttctagaatc aaacatactt caatcgaatt tcaaaagtag agtaaagcta
       61 atcagtttat attacggatt caaagattca tgggtatgct cgagctattt ctttctacaa
      121 ttataaaaaa tagctgtgaa gaaatttatg acgatagatt tcttcacagc taatcgtagt
      181 atgtttgatt attcctctct aggttcttga attatatacg ctttgtttaa agctgatatc
      241 acaagtgcct tagtcatacg aggtgccatc gcccaaccaa tgattctacg ggaaaataag
      301 tccatgacta tggctgaata gagccatcat tctttcgcgt agacatacgt aatgtcaggc
      361 acccaaacac tgccaggttg cgat
//
LOCUS       DANHOL010000356          371 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.401, whole genome shotgun sequence.
ACCESSION   DANHOL010000356 DANHOL010000000
VERSION     DANHOL010000356.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 371)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 371)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..371
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.401"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            <1..>371
                     /locus_tag="PTC08_002528"
     CDS             <1..>371
                     /locus_tag="PTC08_002528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HDK5683948.1"
                     /translation="GNGRLEDTISALDWAIKNNVDIINMSYGFTKNYPELHRKIKEAH
                     EKGIIIVAANGNDIFGGKEFPASYKETISVGVLNKEGSKSVFNSNDDADVFISVDNKL
                     PNSGENTSMATAYVSNKLTKL"
BASE COUNT          133 a           49 c           72 g          117 t
ORIGIN      
        1 tggtaacgga agattggagg atactatatc agcacttgac tgggcaatta aaaataatgt
       61 cgatataata aatatgagtt atggctttac taaaaattat cctgaattac atagaaaaat
      121 aaaagaagct catgaaaaag gcattattat tgtagctgca aacggtaacg acatttttgg
      181 tggtaaagaa tttccagctt cctataaaga aactatatcg gttggagtct tgaataagga
      241 aggttcaaag tctgtcttta attctaacga tgatgctgac gtattcattt cggttgataa
      301 taaattgcct aatagcggtg agaatacttc tatggctaca gcttatgtat ctaataaatt
      361 gactaaactg t
//
LOCUS       DANHOL010000357          348 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.413, whole genome shotgun sequence.
ACCESSION   DANHOL010000357 DANHOL010000000
VERSION     DANHOL010000357.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 348)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 348)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..348
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.413"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            complement(<1..>348)
                     /locus_tag="PTC08_002529"
     CDS             complement(<1..>348)
                     /locus_tag="PTC08_002529"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HDK5683949.1"
                     /translation="CVEIVANGIQYQYQFEYVETAILRETLFYYENGKYHKYFERDEE
                     AFIVTPKWVKDEVTKTRRNELFLKVGQSVNDTHCLNVYRWFSNQLVFINGHIEHRDIK
                     EMLHVIENEESKRD"
BASE COUNT          101 a           73 c           40 g          134 t
ORIGIN      
        1 gtctctttta ctttcttcat tttctatcac atgtagcatt tctttaatat cccgatgctc
       61 tatatgcccg ttaatgaaga cgagctgatt tgagaaccat cgatagacat tcaaacaatg
      121 tgtatcattc acactttgac caacttttaa aaagagttca tttcttctcg ttttcgtcac
      181 ttcatcttta acccatttag gcgtaacaat aaatgcctct tcatctcttt caaaatattt
      241 atggtatttg ccattttcat aataaaataa tgtttcacgt aaaatagccg tttctacata
      301 ttcaaattga tattgatatt gaatcccgtt cgctacgatt tctacaca
//
LOCUS       DANHOL010000358          340 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.417, whole genome shotgun sequence.
ACCESSION   DANHOL010000358 DANHOL010000000
VERSION     DANHOL010000358.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 340)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 340)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..340
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.417"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            89..271
                     /locus_tag="PTC08_002530"
     CDS             89..271
                     /locus_tag="PTC08_002530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683950.1"
                     /translation="MDIIVERLMKDDKIQTIPRTEKDNNSLLQALCREFEIGHAYSEK
                     GGDRVVTLKKTIQYNL"
BASE COUNT          144 a           41 c           62 g           93 t
ORIGIN      
        1 aaagggatca tataaccatt aaaattctga aatttctaat aatgaactta tcattaatac
       61 taaagaacat gtaacagggg gttttaggat ggacataatt gtggaaagat tgatgaagga
      121 tgacaaaata caaacgatac cgcgaacgga gaaggataac aactcattgc ttcaagccct
      181 ttgtcgagaa tttgaaattg gacatgcgta tagtgaaaaa gggggagaca gagttgtcac
      241 gttaaaaaag acaatacagt ataacctttg acatcatcaa aaaatataga tacaatatga
      301 atcattagtt taaattatta taaatgataa aatattatta
//
LOCUS       DANHOL010000359          339 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.denovo.418, whole genome shotgun sequence.
ACCESSION   DANHOL010000359 DANHOL010000000
VERSION     DANHOL010000359.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 339)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 339)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..339
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.denovo.418"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            75..308
                     /locus_tag="PTC08_002531"
     CDS             75..308
                     /locus_tag="PTC08_002531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012087798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I restriction-modification system subunit M
                     N-terminal domain-containing protein"
                     /protein_id="HDK5683951.1"
                     /translation="MATIGFEEKLWQAADKLRGSMDAAKYKNVALGIIFLKYVSDSFE
                     EKYEELKNDDLADEEDKDEYLAENIFWVPKEAR"
BASE COUNT          135 a           37 c           74 g           93 t
ORIGIN      
        1 atcacaaaga aagtcacata tagctttact atttgatata tttgtgtaaa ggataacata
       61 gaggtggaat ataaatggcg acaattggat ttgaagaaaa attatggcaa gctgcggata
      121 aattacgagg gagtatggat gcagcaaaat acaagaatgt agcgttaggc atcatattct
      181 tgaagtatgt atctgactct tttgaagaaa agtatgaaga attaaaaaat gatgatttag
      241 ctgatgaaga ggataaagat gagtacttag cagaaaatat tttctgggta cccaaagaag
      301 cacgttagca gtatattaac gataattcta agaaaccag
//
LOCUS       DANHOL010000360         9972 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.guided.091, whole genome shotgun sequence.
ACCESSION   DANHOL010000360 DANHOL010000000
VERSION     DANHOL010000360.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 9972)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9972)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9972
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.guided.091"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            738..1691
                     /locus_tag="PTC08_002532"
     CDS             738..1691
                     /locus_tag="PTC08_002532"
                     /EC_number="2.1.1.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidylate synthase"
                     /protein_id="HDK5683952.1"
                     /translation="MNPFDAAYHDLCKEILEIGNRRDDRTATGTISKFGHQLRFDLSK
                     GFPLLTTKKVSFKLVATELIWFIRGDTNLRYLLQYNNNIWNEWAFEKYVQSEDYTGPD
                     MTDFGHRAQSDAAFAETYRKEMTKFKQQILTDDDFMKKHGDLGNVYGKQWRNWVSADG
                     QQYDQLKALIEQIKTNPNSRRHIISAWNPTEIETMALPPCHTLFQFYVQDNKLSCQLY
                     QRSADIFLGVPFNIASYSLLTHLIAKECGLEVGEFVHTFGDAHIYSNHLDAVKTQLAR
                     SSFAPPELKINTDRSIFDIEYEDLEIVNYESHPAIKAPIAV"
     gene            1710..2189
                     /locus_tag="PTC08_002533"
     CDS             1710..2189
                     /locus_tag="PTC08_002533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase"
                     /protein_id="HDK5683953.1"
                     /translation="MTLSILVAHDQQRGIGFEGQLPWYLPNDLKHVKKLTTGHTLVMG
                     RATYESIGKPLPYRRNVVITSNPDFKPDGVEVIHSIEEIDAIGDDHIFIFGGQTLFET
                     FIDRVDDMYITVIDDKFQADTFFPPYTFEDWEVTSAVEGTVDEKNKYPHTFLHLTRK"
     gene            2208..3062
                     /locus_tag="PTC08_002534"
     CDS             2208..3062
                     /locus_tag="PTC08_002534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegV family protein"
                     /protein_id="HDK5683954.1"
                     /translation="MQQRIIVTDSTSDLDHAFLKQHNVHIVPLSVTINGESYEDQKDI
                     SSESFSQYLGDSSYDFKTSQPPIGRFVETYEKLGQNGAEIISIHLSSGLSGTYQTAVQ
                     ASEMVDAKVTVIDSKSISFGLGYQLQNAIRWVEEGIPTEEIISKLQNLQKNIKLYVII
                     GQLDQLIKGGRISKTKGLIGNLMKIKPIGSVIDGKLEMIHNARTQNASIKYVLKDLKP
                     FVGDASIKSIGISHAKAKDFMDKFKEKLDETFTVQNFDFGHTTPVISTHTGAGAIGLV
                     VLKDSSDS"
     gene            3080..3604
                     /gene="msrA"
                     /locus_tag="PTC08_002535"
     CDS             3080..3604
                     /gene="msrA"
                     /locus_tag="PTC08_002535"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HDK5683955.1"
                     /translation="MALATLAGGCFWCLVKPFDTFDGVERVTSGYSGGTVENPTYEQV
                     CTNTTGHVEAVQIEYDDNVISYDDILDIYFKTFDPTDKNGQFFDRGDSYRPVIFYHNE
                     AQQQAALNKIDALNQSRIFSDPVVTPVEAYRNFYPAEEAHQDYYKKHPLHYAQYQRGS
                     GRKAFIEKHWGDQA"
     gene            3601..4029
                     /gene="msrB"
                     /locus_tag="PTC08_002536"
     CDS             3601..4029
                     /gene="msrB"
                     /locus_tag="PTC08_002536"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_499956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (R)-S-oxide reductase MsrB"
                     /protein_id="HDK5683956.1"
                     /translation="MIKKDKKDLTDLEYLVTQQDGTEPPFQNEYWNHFEKGVYVDKLS
                     GKPLFTSNDKFESDCGWPSFSKAIDDQEIIELVDKSFGMLRTEVRSEGSNSHLGHVFN
                     DGPKDRGGLRYCINSAAIQFIPYEKLESLGYGDLVKLFDK"
     gene            4043..4543
                     /locus_tag="PTC08_002537"
     CDS             4043..4543
                     /locus_tag="PTC08_002537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020219605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucose transporter subunit IIA"
                     /protein_id="HDK5683957.1"
                     /translation="MFKKLFGKSEEANKEIQVYAPMTGEYVKIEDIPDPVFAQKMMGD
                     GFGIRPTEGKVVSPITGVVDNVFPTKHAIGLKADNGLEVLVHIGLDTVQLNGEGFETL
                     VNSGDTVKVGDPLVTFDVDYIDQHAKSIVSPVIITNTDQTVAIDIQQVAQLNKGETSV
                     IEVTMK"
     gene            4543..4764
                     /locus_tag="PTC08_002538"
     CDS             4543..4764
                     /locus_tag="PTC08_002538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019165329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YozE family protein"
                     /protein_id="HDK5683958.1"
                     /translation="MKDVSFYQFALTVRGRKDDAGQLAEQIFQDLSFPKYDKNFDALS
                     EYIETEGNFTLPMSVFDDLYEEYQEWLQF"
     gene            4815..6344
                     /locus_tag="PTC08_002539"
     CDS             4815..6344
                     /locus_tag="PTC08_002539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014613927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HDK5683959.1"
                     /translation="MSHPFSLCHTIKSARVYADHYNANMDLTRRAENRLKDSPNQRKT
                     PRYVSLKTFMLSIILTVLLTGIIIFGFNYFFQQYSKDEKISENAQKLSEVYEILASDF
                     YQKQDKEQLLDEAIHGMTKSLKDPYTEYLSKEKTASFHEDVSGDFVGIGAELQQKGKQ
                     IIITSPMQDSPAEKAGLKPRDELIAIDGKSIKGKTLDAIIPKIRGKKGTEVKLTVKRN
                     GEEKELTVTRDTIHVKSVKYEKHGNVGVFKINKFQEGTAGELKSAIQQAQKSGIKNIV
                     LDLRNNPGGLLDEAVKMANIFLDQDETVVQLEKGDQKESIKTPNAPLEGVKDLKVSIL
                     LNEGSASASEVFAGALHDHKVAKIYGEKSFGKGIVQTTREFEDGSLLKFTEMKWLTPN
                     GHYIHGKGIQPDIPVKGADYENISVIPTKTTYHQGQEDKHVKSIKIGLKALGYDVGTI
                     DEHYNAQLTTAVKQFQQKNDLTANGMFNKETNGVFTERLVEKASSEDLMLEQTLKKVE
                     E"
     gene            6344..6859
                     /locus_tag="PTC08_002540"
     CDS             6344..6859
                     /locus_tag="PTC08_002540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HDK5683960.1"
                     /translation="MGLLRKATLQDLDTIEQLTEEAKALMIKDDNPQWDHRYPLKTHF
                     NTDIESGSLFVYDEDDVIQGFIVIDQQAPDWYDTLEWPVDKSQAYVIHRLVASPQYRG
                     TAQALMTFAIALAKEHNIDILLTDTFSQNQRAQRLFDKYGFIKIGEMTSTEFPFDKGK
                     PFYAYYKKLTE"
     gene            6869..7954
                     /locus_tag="PTC08_002541"
     CDS             6869..7954
                     /locus_tag="PTC08_002541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase"
                     /protein_id="HDK5683961.1"
                     /translation="MVKIAFTGGGTVGHVSVNLSLIPTALEKGHEAFYIGSKQGIERE
                     MITSQLPETTYYPISSGKLRRYLSVENLKDVFKVVKGIGDARKVLKRERPDIVFSKGG
                     FVSVPVILAAKSLNIPTIVHESDLTPGLANKIAIKFAKRLYTTFEDTLKYVPHEKSDF
                     VGATIREDLKHGHQQNGYALTGFTPNKKILLVMGGSMGSLKINEAIRRHLDELLQTYQ
                     IIHLTGKGLVASNINQDGYVQYEFVKEELTDLLAITDTVVSRAGANAIYEFLTLRLPM
                     LLIPLGLDQSRGDQIDNAKYFEKQGYATMLDESELSSDTLLLALTELEKNRHQYIQNM
                     ESFTESYTRHDLLEKIIQDALQLEVGA"
     gene            7951..8574
                     /locus_tag="PTC08_002542"
     CDS             7951..8574
                     /locus_tag="PTC08_002542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HDK5683962.1"
                     /translation="MTYWKKISLLIVFTLIFSMIAMFHESRLGKWIDNEVYNLIYASE
                     SFISTAIFFGATQIGEVWAMIALSLVMVALLMLYRYKIEALFFALTMLLSGVSNPILK
                     NIFDRERPTLLRLIDISGFSFPSGHAMGSTAFFGSVIYVAHRILKGKAKSVAMTLSVL
                     MIVLISSSRVYLGVHYPTDIMAGIVGGLFCIVLTQLILRHPLAQTKI"
     gene            9070..9747
                     /locus_tag="PTC08_002543"
     CDS             9070..9747
                     /locus_tag="PTC08_002543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019167644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HDK5683963.1"
                     /translation="MKKVLIIEDEQNLARFIELEFKHENYEVEVKYDGVSGLNRALQH
                     DFDLILLDLMLPEMDGLEVCKRLRTQKDTPIIMITAKGEIYDKVTGLDIGADDYIVKP
                     FEIEELLARSRALIRRYSDENVSDTNVVEIDGIKIDKSAFHVTYQSEKLELTKTEFDL
                     LLLLAENKNRVLHREQILDHVWGYESEVETNVVDVYIRYLRNKLKRIDKQKLIETVRG
                     VGYVIRQ"
     gene            9744..>9972
                     /locus_tag="PTC08_002544"
     CDS             9744..>9972
                     /locus_tag="PTC08_002544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015729118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component sensor histidine kinase"
                     /protein_id="HDK5683964.1"
                     /translation="MKQSTLKTKWTFVTTLITFLIIFIFCLLIIYAISSLLKQNEFDK
                     AERSADDLYNLLETKPMKNITALEFSSVLDNY"
BASE COUNT         3392 a         1701 c         1946 g         2933 t
ORIGIN      
        1 ggatgagaca taaaaaaaat taaacctcaa tccattcata gattgatgat tcattaataa
       61 ctttaaagca gtcggaaaat gagactgaat gagatagaaa aaaattgatg ctgttgtttt
      121 tttattttca taaacttgac ctcattttca ctgtatttga tataagattg ccgagaaggc
      181 cgaaactcac gagtgaatgc gtggtggata cttctaactg tcacttcttt actataatag
      241 cgaatgttgt ttatcgcagt agttgtctga cttctcaatg ctatcgcttt tgagaaatct
      301 caacagccat actggggcag tacaacaaaa tctttatttc acatgagatt tctgtactgc
      361 tcctaaaatc caattcggct tccatcaaat gaacacttca atcaagctga actaagttga
      421 agggttagcc cttaggtaag tggatccatg aaagcaatca aaaattacaa atcatagtga
      481 ggacaagttt aactaaaata ttgcatcaat agcatcataa ttgttgatgt cccaatcctt
      541 tttttacact tctaaatcaa tagatagtgt tttcgacaaa aggtgtctat tcacatcatt
      601 ttaacattta caaggtagag atactgaata tattcggatt ctgtagctat acacttatac
      661 ctgcgcatac gttgatatcg ctttgaaaat ggcgtaaaat cgtctattat agatactaag
      721 agaaagaggt gaatgtcatg aatccgtttg atgcagctta tcacgattta tgtaaagaaa
      781 tattagaaat tggcaatcga cgtgatgacc gaacagctac gggaacaatt tcaaaatttg
      841 gacatcagtt gcgttttgac ctttcaaaag gcttcccatt gttaacaaca aaaaaagttt
      901 cttttaaact tgttgcaact gaattgattt ggtttattcg tggtgatacg aatttaagat
      961 atttattaca atataataac aatatttgga acgaatgggc ttttgaaaaa tatgtacaaa
     1021 gcgaagatta cacagggcca gatatgactg actttggtca tagagcacaa agtgacgcgg
     1081 catttgctga aacttatcgc aaagaaatga caaagtttaa acaacagatt ttaactgatg
     1141 atgattttat gaaaaagcac ggggatttag gcaatgttta tggtaagcaa tggcgtaact
     1201 gggttagtgc agacggtcaa caatacgatc aattgaaggc actaattgaa caaattaaaa
     1261 cgaatcctaa ctcacgtcgt catatcatta gtgcttggaa tcctactgaa attgagacaa
     1321 tggcgttacc tccttgtcat acactctttc aattttatgt acaagataat aagctaagct
     1381 gtcaactcta tcaacggagc gccgacattt ttttaggtgt cccgtttaat atagcgagct
     1441 atagcttatt aacacattta attgcgaaag aatgtggcct tgaagtaggc gaatttgtcc
     1501 acacatttgg tgatgcacat atttacagca accatttaga cgctgtgaaa acgcaattag
     1561 cacgttcaag ttttgcgccg ccagaattaa aaatcaatac agatcgttct attttcgaca
     1621 ttgaatatga agatttagag attgtaaatt atgaatctca tccagcgatt aaagcaccta
     1681 tcgcggtata aacaaaaagg agtaatcata tgacattatc tattttagtc gcacatgacc
     1741 aacaacgtgg cattggcttt gaaggacagt taccatggta cttacccaat gacttaaagc
     1801 atgttaaaaa actgacaact ggacatacac ttgtaatggg acgcgcgaca tacgaatcca
     1861 ttggtaaacc gttaccttat cgtagaaatg ttgttattac gagtaatcct gatttcaaac
     1921 cagacggcgt ggaggtcatt catagcattg aagaaattga tgcgattggc gatgaccaca
     1981 tctttatttt tggcggtcaa acgttattcg aaacttttat tgaccgtgtt gacgatatgt
     2041 atatcactgt tatcgacgac aaattccaag cagatacatt tttcccacca tacacatttg
     2101 aagattggga agtgacatct gctgtagaag gcaccgtgga tgaaaagaat aaatatccgc
     2161 acactttttt acatctcact cgaaagtaat tattggaggt tagcattatg caacaacgta
     2221 ttattgttac agattctaca tctgacttag atcacgcttt tctgaagcaa cacaatgtcc
     2281 atattgttcc gttgagtgtt acaattaacg gagaatctta tgaggatcaa aaggacattt
     2341 catctgagtc tttttcacaa tatttaggag acagtagcta tgattttaaa acgagccaac
     2401 ctccaattgg aagatttgta gaaacctatg aaaaactagg tcaaaacggt gctgaaatta
     2461 ttagtattca tctttcatcg gggttaagtg gcacgtatca aaccgctgtt caagcgagtg
     2521 aaatggttga cgctaaagtg acagtcattg attctaaatc aatttctttc ggcttaggct
     2581 atcaacttca aaatgcgatt cgctgggttg aggaaggcat tccaacagag gaaattatct
     2641 caaaacttca aaacttgcaa aaaaacatta agctttacgt gattatcggt caattagatc
     2701 aactcatcaa aggtggacgt attagcaaaa caaaaggttt aatcggtaat cttatgaaaa
     2761 tcaagccaat tggttcagtg attgatggca agctagaaat gattcataat gcgcgtacac
     2821 aaaacgctag tattaaatac gtactcaaag atttaaaacc gtttgtcggt gatgcatcca
     2881 ttaaatcgat tggtatttca catgcaaaag caaaagattt catggataaa tttaaagaaa
     2941 aattagatga aacttttaca gttcaaaact ttgatttcgg acatacaaca cctgtcattt
     3001 caacacatac cggtgcgggt gcgattggtt tagttgtcct taaagattca tctgattcat
     3061 aatgatggag gtgtcaagca tggctttagc aactttagca ggaggatgtt tttggtgtct
     3121 cgttaaacct tttgatacat ttgacggtgt tgaacgtgtc acatcaggtt atagcggtgg
     3181 gacagtagaa aatccaacct atgaacaggt ttgtacaaat acaacaggcc atgtagaggc
     3241 tgtacaaatt gaatacgatg acaatgtgat cagttatgat gatattttag atatatattt
     3301 caaaacgttt gatccgacag ataaaaacgg tcaatttttt gatagaggcg acagttatcg
     3361 acctgtcatt ttttatcaca atgaagcgca acaacaagcc gctttgaata aaattgatgc
     3421 gttaaatcaa tcccgaattt ttagtgatcc tgttgtgacg cctgttgaag catatcgcaa
     3481 tttttatcca gcagaagaag cacatcaaga ttattataaa aaacatccgc ttcactacgc
     3541 acaatatcaa cgtggatcag gacgtaaagc gtttattgaa aaacattggg gggatcaagc
     3601 atgattaaaa aagataaaaa agatttaaca gacttggagt acctcgtcac acaacaagat
     3661 ggcacagaac caccatttca aaatgaatat tggaaccact ttgaaaaggg agtctatgtg
     3721 gataaacttt ctggcaaacc gttattcaca tcaaatgata aatttgaatc tgactgtggc
     3781 tggcctagtt tttcaaaagc catcgacgac caagaaatta ttgaactggt agacaaatcg
     3841 tttggcatgt taagaacgga agtccgctct gaaggtagca acagtcattt aggacatgtg
     3901 ttcaacgacg gtccaaaaga ccgtggtggc ttgcgctatt gcatcaattc tgctgcaatc
     3961 caattcatac cgtatgaaaa gctcgaatcg ttgggctatg gtgatttagt caaacttttc
     4021 gacaaataaa ggagcgagtt ttatgtttaa gaaattattc ggaaaaagtg aagaagcaaa
     4081 taaggaaatt caagtctatg caccgatgac tggagaatat gtcaaaattg aagacattcc
     4141 agaccctgtt tttgctcaaa aaatgatggg tgacggtttt ggcatacgtc caactgaagg
     4201 aaaagtcgtg tctccaatta ctggtgtagt cgacaacgtt ttcccaacca aacatgcgat
     4261 tggtttaaaa gcagacaatg gtttagaagt ccttgttcat atcggtttag acactgttca
     4321 attaaatggt gaaggttttg aaacattagt caatagcgga gatacggtaa aagtaggcga
     4381 cccactcgtt acatttgacg ttgattatat tgaccaacac gcaaaatcta tcgtatcacc
     4441 tgtgatcatt acaaatacag atcaaacagt agccattgat attcaacaag tagcgcaatt
     4501 gaacaaaggc gagacatcag tgattgaagt gacaatgaaa taatgaaaga tgtctcattt
     4561 tatcaatttg cattaactgt tcgtggtcgt aaggatgatg ctggacaact cgcagaacaa
     4621 attttccaag atttatcctt tccaaaatac gataaaaatt tcgatgcgtt atctgaatac
     4681 attgagacag aaggcaattt cacattaccg atgtctgttt ttgatgactt gtatgaagaa
     4741 tatcaagaat ggcttcaatt ttaagtgatt gctgaagttt tgacacgcat aaattttgag
     4801 ggtgatggca gaagatgtct cacccttttt ctttatgtca caccattaaa tctgcacgcg
     4861 tctatgcgga tcattataat gcaaacatgg atttaacgag aagggcggaa aacagattga
     4921 aagattcacc aaatcaaaga aagacaccta gatatgtctc attaaaaaca tttatgttaa
     4981 gtattatcct cacagtatta ttgacaggaa tcattatttt tggtttcaat tactttttcc
     5041 aacaatacag taaagatgag aaaattagtg agaatgctca gaagttaagt gaagtttatg
     5101 aaatattggc gtcagatttt tatcaaaagc aagataaaga acagttgcta gacgaagcca
     5161 ttcatgggat gaccaaaagt ttgaaagacc cttataccga atatttatca aaagaaaaaa
     5221 cagcttcttt tcatgaagat gtttctggtg atttcgtcgg tattggtgcg gaattgcaac
     5281 aaaaaggaaa gcaaatcatc attacgagtc caatgcaaga ttcacctgct gaaaaagctg
     5341 gtttgaaacc acgtgatgaa ctgattgcaa tcgatggcaa gtcaatcaaa ggaaaaacgc
     5401 ttgatgcaat tattcctaaa atccgtggta aaaaaggaac tgaagtgaaa ttgacagtta
     5461 aacgtaacgg ggaagaaaag gaactcactg tgacaagaga tactatccat gttaaaagtg
     5521 taaaatatga aaaacatggc aatgtaggtg tgtttaaaat taataaattc caagaaggga
     5581 cggcgggaga gttaaaatct gccatacagc aagcgcaaaa atcaggtatt aaaaatatcg
     5641 tccttgattt acgtaacaac ccaggtggac tccttgatga agctgtaaaa atggcaaata
     5701 ttttccttga tcaagacgaa acggtcgttc aattagaaaa aggcgatcaa aaagaatcta
     5761 tcaaaacacc aaatgcgccg ttagaaggtg tgaaagattt aaaagtatcg attttactca
     5821 atgaaggttc agcaagtgct tccgaagtct ttgctggtgc attacatgat cataaagtag
     5881 ccaaaattta tggtgaaaaa tcgttcggta aagggattgt acagacgaca cgtgagtttg
     5941 aagacggttc gttattaaaa tttactgaaa tgaagtggct cacacctaat ggccattaca
     6001 ttcatggtaa agggattcaa cctgatatcc ctgttaaagg tgcggattat gagaatattt
     6061 ctgtgattcc taccaaaaca acatatcacc aaggacaaga agacaaacat gttaaatcaa
     6121 taaaaatcgg tcttaaagca cttggttatg atgtgggtac tattgatgaa cattataacg
     6181 cccaattgac taccgcagta aaacaatttc aacaaaaaaa tgatttaacg gcaaatggga
     6241 tgtttaacaa agaaacaaat ggtgtattta cagaaagact tgtcgagaaa gcatcgtctg
     6301 aagatctgat gctagaacaa acattgaaaa aagtagagga gtgatgggct tgttaagaaa
     6361 agcaacattg caagatctcg atacgattga acaattgact gaagaagcaa aagcactcat
     6421 gattaaagat gacaacccac aatgggacca tcgctatcct ttaaagacac attttaatac
     6481 ggatattgaa tcaggtagcc tctttgtcta tgatgaagat gacgtgattc aaggttttat
     6541 cgtgattgat caacaagcac cagattggta cgatacactc gaatggccag ttgacaaatc
     6601 acaagcatac gtgattcatc gccttgtagc ctcgccacaa tatcgtggaa cagctcaagc
     6661 gttgatgact tttgcgattg cattagcgaa agagcacaac attgatattt tattaacgga
     6721 tactttttca caaaatcaac gtgcacaacg tttatttgat aaatatggat tcattaaaat
     6781 cggtgaaatg accagcacag aatttccttt tgataaaggc aagccatttt acgcatacta
     6841 taaaaaatta acagaataga gggttattat ggtaaaaatt gcatttacag gcggcggtac
     6901 agttgggcat gtgtccgtga atttaagttt gataccgact gcactcgaaa aggggcatga
     6961 agctttttat attggttcaa aacaaggcat cgagcgagaa atgattacat ctcaactccc
     7021 tgaaacaact tattatccga tttctagtgg gaaattacgt cgttacttat ctgttgaaaa
     7081 tttgaaagat gtctttaaag tcgttaaagg cattggagat gcacgtaaag tgctaaagcg
     7141 cgaacgacct gatatcgtat tttcaaaagg cggcttcgta tctgttcctg tcatactcgc
     7201 agcgaagtca ctgaacattc cgaccattgt acatgaatca gatttaacac cagggcttgc
     7261 taacaagatt gcaattaagt ttgcgaaacg actctatacc acttttgaag atacgctaaa
     7321 atacgtgcca cacgaaaaat cagatttcgt aggggcaacg attcgtgaag atttaaaaca
     7381 cggtcatcaa caaaatggct atgcattgac aggcttcaca cctaataaaa agatattact
     7441 cgtgatgggt ggcagtatgg gaagtttgaa aattaatgaa gccattcgtc gtcatttaga
     7501 tgaattactg caaacgtatc aaattattca tctgactggg aaaggtcttg tcgcttcaaa
     7561 tattaatcaa gatggctacg tgcaatatga gttcgttaaa gaagaattaa ctgacttatt
     7621 agcgattaca gataccgtcg tgtcaagagc gggtgcaaat gcgatatatg agtttttaac
     7681 attacgtctt cctatgttac ttatcccact tggtctcgat caatcacgtg gtgaccaaat
     7741 cgataacgcg aaatactttg aaaaacaagg atacgcgacg atgttagatg aatcggaatt
     7801 atcgagtgac acgttattac ttgcattaac cgaacttgaa aaaaatcgac atcagtacat
     7861 tcaaaatatg gaaagtttta cagaaagcta tacgcgtcat gatttactcg aaaaaatcat
     7921 tcaagacgca cttcaattgg aggttggcgc atgacatatt ggaaaaagat ttctttgtta
     7981 atagtcttca cattaatatt ttcaatgatt gcgatgtttc atgaatcacg tctcggtaaa
     8041 tggattgata atgaagtata taatttgatt tatgcgtcag aaagctttat ttcaacagca
     8101 atctttttcg gtgccacgca aattggtgag gtatgggcta tgattgcatt atcactcgtc
     8161 atggttgcat tgttgatgct ctatcgctat aaaattgagg cgctcttttt cgcattaacg
     8221 atgctgttat caggggtatc gaaccctatt ttgaaaaata tttttgacag agaacgtcca
     8281 actttattac gcttaattga tatttcaggg ttcagctttc caagtggtca tgcgatggga
     8341 tcaactgcct ttttcggtag tgtgatttac gtcgcacacc gtattttaaa aggaaaagca
     8401 aaaagcgtgg cgatgacatt aagtgtgtta atgatcgttc tcatttcgag ctcacgcgtc
     8461 tatcttggcg tacattaccc aacagatatc atggctggta ttgtcggagg gctcttctgt
     8521 atcgtgctga cacaactcat cctacgccac ccattagccc aaactaaaat ctaatcaata
     8581 aagaactgtc tttcatgagg agagacagtt ctttttatat gcgatggtta tcatagcatc
     8641 taatttcttt cactaagttc catcttttca agcaatagca tgagattact gtgaaaaata
     8701 tgactgtctt caagcattat cttttttaaa acacagatac ccatgtgtac aaaagagagg
     8761 acgtgacatc aagctttttc tcttctttct cactcaaaaa catgcacaat aaaagccgcc
     8821 gcatttactg cgacggcttt tatttaacgt ttaatatcaa cgaattttat acgggcatat
     8881 aaaaggggat attattgaaa atgactcaat cataagaacg aattgtagtg gggggtcgtt
     8941 gggattgata atcattttca attacattat aacgcattga gaatcattgt caattaaaaa
     9001 cgcaaatttt tttaaaaaac tttcgcgttc ctcattttta gcatatgatt agggggagag
     9061 gtggctaata tgaaaaaagt acttattatt gaagacgagc aaaatttagc acgtttcatt
     9121 gaacttgaat ttaagcatga aaattatgaa gtagaagtga aatatgacgg tgtatctggt
     9181 ttgaaccgcg cattacagca tgactttgat ttaatactct tagatttgat gttaccagaa
     9241 atggacggct tagaagtctg taaaagatta agaacacaaa aagatacacc gattattatg
     9301 attactgcga aaggtgaaat atacgataaa gtcactggat tagatatcgg tgcagatgat
     9361 tacatcgtta aaccatttga aattgaagaa ctattagcta gaagtcgcgc actcattcgt
     9421 cgttattcag acgaaaacgt gtccgataca aatgttgtgg aaattgatgg tattaaaatt
     9481 gataagagtg cttttcatgt cacttatcaa agcgaaaaac tggaattaac gaaaacggaa
     9541 tttgatttat tattactcct cgctgaaaat aaaaatcgcg tccttcaccg tgaacaaatt
     9601 ttagatcacg tctggggata tgaatctgaa gtcgaaacga atgtggttga tgtgtatatc
     9661 cgttatttac gaaataagtt aaagcgcatt gataaacaaa aattaattga aactgtgcgt
     9721 ggtgtcggct atgtgattcg tcaatgaaac aatcaacgct caagacaaag tggacttttg
     9781 taacgacact cattacattt cttattattt tcatcttttg tttgctcatc atttatgcca
     9841 tcagcagctt attaaagcaa aatgaatttg ataaagcaga aagaagcgct gatgatctat
     9901 acaatttact tgaaacgaaa ccgatgaaga atattactgc attagaattc agctccgtac
     9961 ttgataacta tc
//
LOCUS       DANHOL010000361         5708 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.guided.140, whole genome shotgun sequence.
ACCESSION   DANHOL010000361 DANHOL010000000
VERSION     DANHOL010000361.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 5708)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5708)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5708
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.guided.140"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            <1..586
                     /locus_tag="PTC08_002545"
     CDS             <1..586
                     /locus_tag="PTC08_002545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032491779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="aminoglycoside 6-adenylyltransferase"
                     /protein_id="HDK5683965.1"
                     /translation="LDNYLKGDKLIKVLIDKDCRIKRDIVPTDIDYHVRKPSAREYDD
                     CCNEFWNVTPYVIKGLCRKEILFAIDHFNQIVRHELLRMISWKVGIETGFKLSVGKNY
                     KFIERYISEDLWEKLLSTYRMDSYENIWEALFLCHQLFRAVSGEVAERLHYAYPEYDR
                     NITKYTRDMYKKYTGKTGCLDSTYAADIEERREQ"
     gene            583..1125
                     /gene="sat4"
                     /locus_tag="PTC08_002546"
     CDS             583..1125
                     /gene="sat4"
                     /locus_tag="PTC08_002546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000627290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="streptothricin N-acetyltransferase Sat4"
                     /protein_id="HDK5683966.1"
                     /translation="MITEMKAGHLKDIDKPSEPFEVIGKIIPRYENENWTFTELLYEA
                     PYLKSYQDEEDEEDEEADCLEYIDNTDKIIYLYYQDDKCVGKVKLRKNWNRYAYIEDI
                     AVCKDFRGQGIGSALINISIEWAKHKNLHGLMLETQDNNLIACKFYHNCGFKIGSVDT
                     MLYANFENNFEKAVFWYLRF"
     gene            1218..2012
                     /locus_tag="PTC08_002547"
                     /note="aph(3')-IIIa"
     CDS             1218..2012
                     /locus_tag="PTC08_002547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032491780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside O-phosphotransferase
                     APH(3')-IIIa"
                     /protein_id="HDK5683967.1"
                     /translation="MAKMRISPELKKLIEKYRCVKDTEGMSPAKVYKLVGENENLYLK
                     MTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLMSEADGVLCSEEY
                     EDEQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWE
                     EDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGRADKW
                     YDIAFCVRSIREDIGEEQYVELFFDLLGIKPDWEKIKYYILLDELF"
     gene            2288..2860
                     /locus_tag="PTC08_002548"
     CDS             2288..2860
                     /locus_tag="PTC08_002548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001079940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH domain-containing protein"
                     /protein_id="HDK5683968.1"
                     /translation="MNRINRVTSILIQLQSKKIIPAKEIAQRFNISLRTVYRDIRTLE
                     EAGIPIGSEAGKGYFLVEGFLLPPVMFTAAEVGALITAGKFLNCHGDESFIKDFDSAM
                     YKIKSILKHGEKNYAQELENSINVYSTSGQKNTLADNVIAAIQTAICNKRVISIQYPA
                     SGGQEPESRMIEPISLGFYEQNWYLIGFAG"
     gene            2833..3240
                     /locus_tag="PTC08_002549"
     CDS             2833..3240
                     /locus_tag="PTC08_002549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WYL domain-containing protein"
                     /protein_id="HDK5683969.1"
                     /translation="MVLNRFCRLRNEYRNFRVDRIKSICIEEELCQSHDGSLEQILKQ
                     MLSYKKLYNVILRAEKGETYNSIKNRYSLGFLEETDLGSKMEIEFQTDSFEILSKQLI
                     EYGSGIEIVQPDELKCITRKHLAQITNHCLNLI"
     gene            3351..4010
                     /locus_tag="PTC08_002550"
     CDS             3351..4010
                     /locus_tag="PTC08_002550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014636358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RibD family protein"
                     /protein_id="HDK5683970.1"
                     /translation="MKPKIIMHTQISLDGRIKGFDNPEVYYQVAGGIHSDAVLFGSNT
                     VFTAFEKYPAETEADFEKIITSPEDPRPIGVIPDSRGILRSLHCLRNLGYLKEIVILV
                     STATPKEYLNYLEERHYPYIVSGNDHVDYEKAFQILHEQYGCKYMRTDSGGGLTNKLL
                     ENGLIDEISLVISPCFVGNKEKQLFDNLLLSEKVNLELQGTENAEHGCLSLRYAVKNK
                     D"
     gene            complement(4731..>5708)
                     /locus_tag="PTC08_002551"
     CDS             complement(4731..>5708)
                     /locus_tag="PTC08_002551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_086558228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS1182-like element IS1182 family transposase"
                     /protein_id="HDK5683971.1"
                     /translation="QLIEAIDQTETVEERKLLRKEKSEVHKQKKRFDDFAQRKMSYEE
                     QLVIMGVRNSFSKTDHDATFMRMKEDHMLNGQLKPGYNIQLATENQFALAYDCYPNPT
                     DTRTFIPFLEKIESKIGLPENIVADAGYASEENYCYVLDETESTPIIPHQGYLKEKKR
                     AHKQNQFHRDNWTYNELDDYYICPNQKRVVFSHYSQRKDRNGFIRNFKIYECEDCTGC
                     PLREKCTKAKEGKNRRLNINPTWEYIKIKANEKIESKETASYYAQRKIDVETVFGNIK
                     QNMKFKRFHVRGAEKIFKEMGLVFLAHNFRKLVTRVRKYEGKTIIQNQI"
BASE COUNT         1796 a          962 c         1253 g         1697 t
ORIGIN      
        1 gttagataat tacctaaagg gcgataaatt aataaaggtt ctaattgata aagattgtag
       61 aattaaaagg gacatagttc cgactgatat agattatcat gtaagaaagc caagcgcaag
      121 ggagtatgat gattgctgca atgaattttg gaatgtaaca ccttatgtta ttaaaggatt
      181 gtgccgtaag gaaattttat ttgctattga tcattttaat cagattgttc gccatgagct
      241 gctgagaatg atatcatgga aggtcggcat cgaaacaggc tttaaattaa gtgtaggcaa
      301 gaactataag tttattgaaa ggtatatatc cgaggatttg tgggagaaac ttttgtccac
      361 ctaccggatg gattcctatg aaaacatatg ggaagcatta tttctatgcc atcaattgtt
      421 cagggcggta tccggtgagg tggcggaaag gcttcattat gcctatccgg agtatgatag
      481 gaatataaca aaatatacca gggacatgta taaaaaatac actggtaaaa ccggctgcct
      541 ggatagcaca tatgccgctg atatagaaga gaggcgggaa cagtgattac agaaatgaaa
      601 gcagggcacc tgaaagatat cgataaaccc agcgaaccat ttgaggtgat aggtaagatt
      661 ataccgaggt atgaaaacga gaattggacc tttacagaat tactctatga agcgccatat
      721 ttaaaaagct accaagacga agaggatgaa gaggatgagg aggcagattg ccttgaatat
      781 attgacaata ctgataagat aatatatctt tactaccaag acgataaatg cgtcggaaaa
      841 gttaaactgc gaaaaaattg gaaccggtac gcttatatag aagatatcgc cgtatgtaag
      901 gatttcaggg ggcaaggcat aggcagcgcg cttatcaata tatctataga atgggcaaag
      961 cataaaaact tgcatggact aatgcttgaa acccaggaca ataaccttat agcttgtaaa
     1021 ttctatcata attgtggttt caaaatcggc tccgtcgata ctatgttata cgccaacttt
     1081 gaaaacaact ttgaaaaagc tgttttctgg tatttaaggt tttagaatgc aaggaacagt
     1141 gaattggagt tcgtcttgtt ataattagct tcttggggta tctttaaata ctgtagaaaa
     1201 gaggaaggaa ataataaatg gctaaaatga gaatatcacc ggaattgaaa aaactgatcg
     1261 aaaaataccg ctgcgtaaaa gatacggaag gaatgtctcc tgctaaggta tataagctgg
     1321 tgggagaaaa tgaaaaccta tatttaaaaa tgacggacag ccggtataaa gggaccacct
     1381 atgatgtgga acgggaaaag gacatgatgc tatggctgga aggaaagctg cctgttccaa
     1441 aggtcctgca ctttgaacgg catgatggct ggagcaatct gctcatgagt gaggccgatg
     1501 gcgtcctttg ctcggaagag tatgaagatg aacaaagccc tgaaaagatt atcgagctgt
     1561 atgcggagtg catcaggctc tttcactcca tcgacatatc ggattgtccc tatacgaata
     1621 gcttagacag ccgcttagcc gaattggatt acttactgaa taacgatctg gccgatgtgg
     1681 attgcgaaaa ctgggaagaa gacactccat ttaaagatcc gcgcgagctg tatgattttt
     1741 taaagacgga aaagcccgaa gaggaacttg tcttttccca cggcgacctg ggagacagca
     1801 acatctttgt gaaagatggc aaagtaagtg gctttattga tcttgggaga agcggcaggg
     1861 cggacaagtg gtatgacatt gccttctgcg tccggtcgat cagggaggat atcggggaag
     1921 aacagtatgt cgagctattt tttgacttac tggggatcaa gcctgattgg gagaaaataa
     1981 aatattatat tttactggat gaattgtttt agtacctaga tttagatgtc taaaaagctt
     2041 taactacaag ctttttagac atctaatctt ttctgaagta catccgcaac tgtccatact
     2101 ctgatgtttt atatcttttc taaaagttcg ctagatagag ttctatatta gagatgtaaa
     2161 gagttttggt gaagaggttt gtgagtatgg cttttataac cagggtgcaa tgagaagcac
     2221 taacagcagc tagcttaaga acgcatagga tatacttttt atggaagtca cagaggagga
     2281 ataaaatttg aacaggatta acagagtaac ctctattctt attcagctgc aatcaaaaaa
     2341 aataattcct gccaaagaaa ttgcacagcg atttaatata agcttaagga cagtttacag
     2401 agatatccgg acacttgaag aagccggaat accaattgga tctgaggccg gaaaaggata
     2461 ttttcttgta gagggcttcc tacttccgcc ggtaatgttt acagcggcgg aagtgggtgc
     2521 attgattaca gcagggaaat ttttaaattg ccatggagat gaatcattta taaaggattt
     2581 tgattcagct atgtataaaa tcaaatctat tttgaagcat ggtgaaaaaa actatgcaca
     2641 ggagttggag aacagtatta acgtgtacag cacatctgga cagaaaaata cattggcgga
     2701 taacgttatt gcagcaattc agactgcaat ctgcaataaa agggtaatat caattcaata
     2761 tcctgcatca ggagggcaag aaccggaaag cagaatgata gagcctatat cactggggtt
     2821 ttatgaacag aactggtact taatcggttt tgcaggctaa gaaatgaata taggaatttt
     2881 cgtgtggatc ggattaaaag catttgcata gaagaagagc tctgtcaaag ccatgatggc
     2941 tctttggaac aaatattaaa acaaatgctt tcatataaaa aactatataa tgtaattctt
     3001 agagctgaaa aaggggagac atacaattct atcaagaaca ggtattctct cggcttcctt
     3061 gaagaaaccg atttgggaag taaaatggaa atcgaattcc agacagattc ctttgagata
     3121 ttgagcaagc agctgattga atatggatca ggcattgaaa tagtccaacc tgatgaatta
     3181 aaatgcataa cccgtaaaca cctggcacaa attacgaatc actgcctaaa cttgatttag
     3241 agaaagcgat tggtctgtta tgtatttttt gtaaggtttc atatcccctg ctgacataca
     3301 gctgtcagtg tattatgata ttctactatc aaaaaggagg attgaaaaat atgaaaccaa
     3361 agataattat gcacacacaa attagccttg atggccgcat taaaggcttt gataatccgg
     3421 aagtttacta ccaggttgcc gggggaattc attcggatgc ggtgctgttt gggtccaata
     3481 ctgtttttac tgcatttgaa aaatatcctg ctgaaacaga ggctgatttt gagaaaatca
     3541 taacaagccc ggaggacccc agaccaatag gagtcatacc tgacagcaga ggtatcttga
     3601 gaagtcttca ttgcttaaga aatcttggat atctgaagga aattgtcatt ctggtatcaa
     3661 ctgccactcc gaaggaatat ttgaattatt tggaggaaag gcattaccca tatattgtgt
     3721 caggaaatga tcatgtggac tatgaaaaag cctttcagat cctgcatgag caatatgggt
     3781 gtaaatacat gcggacagac agtggcggtg gattaaccaa caaattatta gaaaacggac
     3841 ttattgatga aatcagtctt gtgatatcac catgttttgt aggtaataaa gaaaaacaac
     3901 tatttgataa ccttctgtta tctgaaaaag ttaatttgga attgcaggga acagagaatg
     3961 cagaacatgg ctgtctgtca ttgcgctatg ctgtgaaaaa taaggattag tgcagcatac
     4021 tttaaaaagt gtctgttggg acagtgtcct aaaggaagca taagctcatg gctagcggcg
     4081 gtgttaaagt aacggcactc ggccccaata tatagttgat atgcccctaa gcctttgagg
     4141 gcaaggcggt caaccgcgcc ttttccggtc cgcatacagt cgttcaatga gggtatcaag
     4201 ctcggcaatg cggcggtgct tctcggtggt tcgtttcttc gccgccgttt tcggctaatt
     4261 ctaattgatc cgaactgtaa ggataagcaa ttatccgggg ctagttaagt atcttagaga
     4321 ggaagataaa gataagtaaa ccaattttaa agttgtaccg aataaagcct tcaagaggac
     4381 aacatgcttt tgaaggcttt attgcttaca attacttgga ttgtaacgca aaagcaggca
     4441 ccaaatcaat gaaaaatagc ctatccaggc gactgtttca gaaatatggg cttccgccaa
     4501 ggggatacca gtggggtgcg acatcttttt tgcccactca aggcatgtgg agtgtgtggc
     4561 gttgttgcgt agaaagtaag gctggagtcc ttatatctgg ctgagcttaa tctctggtaa
     4621 ttttgagggg gctgacccat tagtcccttt tgaaccaaaa aatcgaaggc acccgtgaaa
     4681 gatgtcttcg atttttgttt tttttggatg aaatatagag gattttcccc ctatatttgg
     4741 ttttgtatga ttgtttttcc ctcatatttc cttactctag ttactaattt cctaaaattg
     4801 tgcgcaagaa atacaagtcc catttcctta aaaatttttt cagctcctcg gacatggaat
     4861 cttttaaatt tcatattttg tttaatgttt ccaaaaactg tttcgacatc tatctttcgc
     4921 tgcgcatagt atgaggctgt ttctttgctt tctatctttt cattcgcttt tatttttata
     4981 tattcccagg ttggattaat attcaaacgt cgattttttc cttcttttgc tttggtacat
     5041 ttctctctca atggacatcc tgtacaatct tcacattcat agattttgaa gtttcgaata
     5101 aatccatttc tatctttacg ttgtgaataa tgtgagaaca ctactctttt ctgattggga
     5161 caaatatagt aatcatccaa ctcgttgtaa gtccaattat ctcgatgaaa ctgattttgt
     5221 ttatgggcgc gtttcttctc ttttaagtaa ccttgatgcg gaatgatggg ggtggattct
     5281 gtttcgtcta acacataaca ataattttct tcacttgcat aaccggcatc tgcgacaata
     5341 ttttctggta aacctatttt tgattcaatc ttttcaagaa atgggataaa tgttcgtgta
     5401 tctgttggat ttggataaca atcataagca agagcaaatt gattttctgt cgcaagttga
     5461 atattataac ctggttttag ttggccatta agcatgtgat cttctttcat tcgcataaaa
     5521 gtagcgtcat gatccgtctt tgagaaacta ttgcgtacac ccataatcac taattgttct
     5581 tcgtagctca tttttctttg ggcaaaatca tcgaatcgct tcttctgctt atgaacttca
     5641 gatttttctt tacgaagtaa ttttcgttct tctactgttt cggtttggtc aatcgcttca
     5701 attaattg
//
LOCUS       DANHOL010000362         3117 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.guided.199, whole genome shotgun sequence.
ACCESSION   DANHOL010000362 DANHOL010000000
VERSION     DANHOL010000362.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 3117)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3117)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3117
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.guided.199"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            224..721
                     /gene="dfrG"
                     /locus_tag="PTC08_002552"
     CDS             224..721
                     /gene="dfrG"
                     /locus_tag="PTC08_002552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000868795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimethoprim-resistant dihydrofolate reductase
                     DfrG"
                     /protein_id="HDK5683972.1"
                     /translation="MKVSLIAAMDKNRVIGKENDIPWRIPKDWEYVKNTTKGHPIILG
                     RKNLESIGRALPDRRNIILTRDKGFTFNGCEIVHSIEDVFELCKNEEEIFIFGGEQIY
                     NLFFPYVEKMYITKIHHEFEGDTFFPEVNYEEWNEVFAQKGIKNDKNPYNYYFHVYER
                     KNLLS"
     gene            complement(793..2745)
                     /locus_tag="PTC08_002553"
     CDS             complement(793..2745)
                     /locus_tag="PTC08_002553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017431446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insertion element protein"
                     /protein_id="HDK5683973.1"
                     /translation="MTKLKRLATKEDEIVDVKIPISNEELKDRAKQYDLLTPKRFATR
                     YNKMLFLPTSFKWNGSEYPIQYNYCINPFCCNFGKEQHKFKDVKGKPSRYKMTGSSKD
                     KGHKGMYCNDNPIGRGVSQNCTVTPLSNWSVVEEIKRLIEINSIQDVEPDYQFHKEGC
                     SEEESTPFNEPKQFYKRGKSRGKSQRYQCKACKKFTNVLPKREETTTYHQQKNTILPM
                     FAKMVVGRVSVSRTCDILGIGVGTYYHKLEWLYRRCLEFLERYETQPLQTKKFNEMWL
                     NTDKMHYYLNNVRKKGQGSKKYTGFEDLNMQTYIVVSAEVLSRYVFRSDVAYDWNISM
                     DELNEDTRKFKEDHLNTFSRKNDRLDWSYYPQEPSANDSENRNAYLHELGKITNRSRF
                     VDGLNVDAPYTTTAHYWLIKQMVNADEWRMISDDDFSIRNAFYRVFTKELRLSDAHHF
                     ICQVNKTKSRKQCLKEFGQAKAELLDWGDIRGFKTKFLRTLASHYLTELLTSHQFHEE
                     AISKDGERYRKYADNPIKHPLATKDKGFYSVDCRTDLSALEPNEIAKMLLNVNDHSTN
                     SFIQQIRRYISSLERPLTTARGDKKSYIYANFNPKYAQFAITILRTYYNFCRPFKSAD
                     KKVLTPAQRLGITDKQFDWKDIIYFK"
     gene            complement(2752..2988)
                     /locus_tag="PTC08_002554"
     CDS             complement(2752..2988)
                     /locus_tag="PTC08_002554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001159903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683974.1"
                     /translation="MQFLEPKNKNAKSVDWEISEQVRVIVKQYAEYAERTESEAVDEF
                     LLNILDDKKFIEWIANKRSNKRIVEKMGIKDRVG"
BASE COUNT          954 a          542 c          517 g         1104 t
ORIGIN      
        1 ctactttttt cattttaact tacataccaa attacataca aaatgattta taaaatgcaa
       61 ttgaaaatga taattgaatg aaaatttgtg attttgtggt attatgataa tataacttat
      121 agaaaaaatt gcttattcaa ctaacgggca ggataatgag aaaaggtttt ttgatagaaa
      181 taagaaatta gatggtaaat tagttaaaaa ggctgtgtta taaatgaaag tttctttgat
      241 tgctgcgatg gataagaata gagtgattgg caaagagaat gacattcctt ggaggattcc
      301 caaggactgg gaatatgtta aaaatactac aaagggacat ccgataatat taggtaggaa
      361 gaaccttgaa tcaatcggaa gagccttacc tgacagaaga aatattattc tgacgagaga
      421 taaggggttt acctttaatg gttgtgaaat tgttcattca atagaagatg tttttgagtt
      481 atgtaaaaac gaagaagaaa tttttatttt cggaggagaa cagatttata atttgttttt
      541 cccttatgtt gagaaaatgt acatcacaaa aatacatcat gaattcgaag gagatacttt
      601 ttttccagaa gtgaattatg aggaatggaa tgaggtattt gcccaaaaag ggataaagaa
      661 tgataaaaat ccgtataact actattttca tgtatatgaa agaaaaaact tattgagtta
      721 acgggtgcgt taattgaaga agaacagtaa agataaagca caagagcttg ggattactcc
      781 aagctctttt tgtcatttga aataaattat atctttccaa tcaaattgtt tatctgtaat
      841 ccctaatctt tgagcaggtg tcaaaacctt tttatccgct gatttaaaag ggcgacaaaa
      901 gttgtagtaa gttcttagaa ttgtaatcgc aaattgagca tacttcggat tgaagttagc
      961 gtaaatatag ctcttcttat caccacgagc tgttgttaat ggtctttcaa gagatgatat
     1021 ataacgtctt atctgttgaa taaagctatt ggtcgaatgg tcattaacat ttaatagcat
     1081 ctttgcgatt tcgtttggtt ccagagcaga taaatccgtt ctacaatcaa ctgaataaaa
     1141 tcctttatcc ttagtggcta atggatgttt gatagggtta tcggcatatt tgcgatatct
     1201 ttctccatct ttactaatag cctcttcgtg gaattgatga cttgttagta attcagttag
     1261 ataatgagat gccaaagtcc gtagaaactt tgttttgaat cctctgatat ctccccaatc
     1321 gagcagttct gcttttgctt gtccgaattc ttttaagcat tgttttctgc ttttcgtctt
     1381 gttaacttgg caaataaaat gatgtgcatc gctcaacctt aattctttcg tgaatactct
     1441 ataaaaggcg tttctaatag agaagtcatc atcactaatc attcgccatt cgtcggcatt
     1501 aaccatttgt ttaattaacc aatagtgagc agttgtagta taaggagcat caacatttaa
     1561 accatcgaca aatctactcc tattagtaat tttccctaat tcgtgaagat aagcattcct
     1621 attttcgcta tcgttagcgg atggttcttg tggataataa gaccaatcta acctatcatt
     1681 tttacgacta aaagtattga gatggtcttc tttgaatttt cttgtatctt catttaattc
     1741 atccattgaa atattccaat cataggcaac atcagaacgg aacacatatc ttgataagac
     1801 ctcagcagat acaactatat acgtttgcat attaaggtct tcaaaccccg tatatttctt
     1861 tgaaccttgt cctttcttac ggacgttatt taggtagtag tgcatcttgt ccgtattaag
     1921 ccacatctcg ttaaatttct ttgtttgaag gggttgtgtc tcatatcgtt ctaaaaactc
     1981 caaacaacgc ctatacagcc actccagctt atgatagtag gttccaactc caattcctaa
     2041 aatatcacaa gtacgactga ctgaaaccct tccaacaacc atcttagcga acattggaag
     2101 aatggtgttc ttttgttggt gataagtagt ggtttcttct ctttttggta gaacattagt
     2161 gaacttctta cacgccttac attgatagcg ttgagatttg cccctacttt tccccctttt
     2221 gtaaaattgc ttcggctcat tgaatggggt tgattcttct tccgagcagc cttctttatg
     2281 aaattgataa tctggctcaa catcttggat gctattgatt tctataaggc gtttaatttc
     2341 ttcaacaaca gaccaattag ataaaggggt tactgtacag ttttgcgata cacctctgcc
     2401 aataggattg tcattgcagt acataccttt atgaccttta tctttggaac taccagtcat
     2461 tttatatcga cttggtttcc cttttacatc tttgaatttg tgctgttctt tcccaaaatt
     2521 acaacaaaac ggattgatgc agtaattata ttgaatggga tattcagaac cgttccattt
     2581 aaaagacgtt ggcaagaaca acattttgtt ataccttgtt gcaaatcgtt ttggagttaa
     2641 taaatcatat tgtttagccc tatcttttaa ttcttcgttt gaaatcggaa ttttaacatc
     2701 tacaatttca tcttccttcg tggctaatct tttaagcttg gtcattgtct atcaacccac
     2761 tctatctttg atacccattt tttcaacaat ccgcttatta cttcgcttgt tggcaatcca
     2821 ttcaataaac ttcttatcgt ctaaaatgtt caataagaat tcatccactg cttcgctttc
     2881 agtacgctct gcatattcag cgtattgctt aactatcacc cttacttgct ctgatatttc
     2941 ccaatccaca gacttagcgt tcttattttt tggctcaaga aattgcatag gaaaatgcac
     3001 ccctttttgc ttagtaaatt gtaaccattt taacacacca atttgcattc ctacaataat
     3061 tatttcacgt tcgcattttt atatacattt taacttacat tttgtggtgt aaattaa
//
LOCUS       DANHOL010000363         1769 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.guided.245, whole genome shotgun sequence.
ACCESSION   DANHOL010000363 DANHOL010000000
VERSION     DANHOL010000363.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 1769)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1769)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1769
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.guided.245"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            <1..1721
                     /gene="mec"
                     /locus_tag="PTC08_002555"
     CDS             <1..1721
                     /gene="mec"
                     /locus_tag="PTC08_002555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001801873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PBP2a family beta-lactam-resistant peptidoglycan
                     transpeptidase"
                     /protein_id="HDK5683975.1"
                     /translation="AQYKIKTNYGNIDRNVQFNFVKEDGMWKLDWDHSVIIPGMQKDQ
                     SIHIENLKSERGKILDRNNVELANTGTAYEIGIVPKNVSKKDYKAIAKELSISEDYIK
                     QQMDQNWVQDDTFVPLKTVKKMDEYLSDFAKKFHLTTNETESRNYPLGKATSHLLGYV
                     GPINSEELKQKEYKGYKDDAVIGKKGLEKLYDKKLQHEDGYRVTIVDDNSNTIAHTLI
                     EKKKKDGKDIQLTIDAKVQKSIYNNMKNDYGSGTAIHPQTGELLALVSTPSYDVYPFM
                     YGMSNEEYNKLTEDKKEPLLNKFQITTSPGSTQKILTAMIGLNNKTLDDKTSYKIDGK
                     GWQKDKSWGGYNVTRYEVVNGNIDLKQAIESSDNIFFARVALELGSKKFEKGMKKLGV
                     GEDIPSDYPFYNAQISNKNLDNEILLADSGYGQGEILINPVQILSIYSALENNGNINA
                     PHLLKDTKNKVWKKNIISKENINLLTDGMQQVVNKTHKEDIYRSYANLIGKSGTAELK
                     MKQGETGRQIGWFISYDKDNPNMMMAINVKDVQDKGMASYNAKISGKVYDELYENGNK
                     KYDIDE"
BASE COUNT          740 a          258 c          306 g          465 t
ORIGIN      
        1 atgctcaata taaaattaaa acaaactacg gtaacattga tcgcaacgtt caatttaatt
       61 ttgttaaaga agatggtatg tggaagttag attgggatca tagcgtcatt attccaggaa
      121 tgcagaaaga ccaaagcata catattgaaa atttaaaatc agaacgtggt aaaattttag
      181 accgaaacaa tgtggaattg gccaatacag gaacagcata tgagataggc atcgttccaa
      241 agaatgtatc taaaaaagat tataaagcaa tcgctaaaga actaagtatt tctgaagact
      301 atatcaaaca acaaatggat caaaattggg tacaagatga taccttcgtt ccacttaaaa
      361 ccgttaaaaa aatggatgaa tatttaagtg atttcgcaaa aaaatttcat cttacaacta
      421 atgaaacaga aagtcgtaac tatcctctag gaaaagcgac ttcacatcta ttaggttatg
      481 ttggtcccat taactctgaa gaattaaaac aaaaagaata taaaggctat aaagatgatg
      541 cggttattgg taaaaaggga ctcgaaaaac tttacgataa aaagctccaa catgaagatg
      601 gctatcgtgt cacaatcgtt gacgataata gcaatacaat cgcacataca ttaatagaga
      661 aaaagaaaaa agatggcaaa gatattcaac taactattga tgctaaagtt caaaagagta
      721 tttataacaa catgaaaaat gattatggct caggtactgc tatccaccct caaacaggtg
      781 aattattagc acttgtaagc acaccttcat atgacgtcta tccatttatg tatggcatga
      841 gtaacgaaga atataataaa ttaaccgaag ataaaaaaga acctctgctc aacaagttcc
      901 agattacaac ttcaccaggt tcaactcaaa aaatattaac agcaatgatt gggttaaata
      961 acaaaacatt agacgataaa acaagttata aaatcgatgg taaaggttgg caaaaagata
     1021 aatcttgggg tggttacaac gttacaagat atgaagtggt aaatggtaat atcgacttaa
     1081 aacaagcaat agaatcatca gataacattt tctttgctag agtagcactc gaattaggca
     1141 gtaagaaatt tgaaaaaggc atgaaaaaac taggtgttgg tgaagatata ccaagtgatt
     1201 atccatttta taatgctcaa atttcaaaca aaaatttaga taatgaaata ttattagctg
     1261 attcaggtta cggacaaggt gaaatactga ttaacccagt acagatcctt tcaatctata
     1321 gcgcattaga aaataatggc aatattaacg cacctcactt attaaaagac acgaaaaaca
     1381 aagtttggaa gaaaaatatt atttccaaag aaaatatcaa tctattaact gatggtatgc
     1441 aacaagtcgt aaataaaaca cataaagaag atatttatag atcttatgca aacttaattg
     1501 gcaaatccgg tactgcagaa ctcaaaatga aacaaggaga aactggcaga caaattgggt
     1561 ggtttatatc atatgataaa gataatccaa acatgatgat ggctattaat gttaaagatg
     1621 tacaagataa aggaatggct agctacaatg ccaaaatctc aggtaaagtg tatgatgagc
     1681 tatatgagaa cggtaataaa aaatacgata tagatgaata acaaaacagt gaagcaatcc
     1741 gtaacgatgg ttgcttcact gttttatta
//
LOCUS       DANHOL010000364         1525 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.guided.258, whole genome shotgun sequence.
ACCESSION   DANHOL010000364 DANHOL010000000
VERSION     DANHOL010000364.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 1525)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1525)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1525
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.guided.258"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            <1..364
                     /gene="fosB"
                     /locus_tag="PTC08_002556"
     CDS             <1..364
                     /gene="fosB"
                     /locus_tag="PTC08_002556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="metallothiol transferase FosB"
                     /protein_id="HDK5683976.1"
                     /translation="FYKDILKATLLVEGKHTAYFTLGGVWLALNEEKNISRNEIKQSY
                     THIAFSISESDFDSWYYWLKCNQVNILKGRERNIKDKQSIYFTDHDGHKIELHTGTLQ
                     ERLDYYQQEKTHMKFFKH"
     gene            432..761
                     /locus_tag="PTC08_002557"
     CDS             432..761
                     /locus_tag="PTC08_002557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019166890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HDK5683977.1"
                     /translation="MIEYEWKHLKPENRESGQFIEVLHPDFKEFGMSGKVYDRSDFEC
                     IELHVAEYEISDFQVDHLAEDCRLCTYTLIDHTRHIKTNRTSIWKMHEGDWKLLFHQG
                     TVKQDPY"
     gene            complement(866..>1525)
                     /locus_tag="PTC08_002558"
     CDS             complement(866..>1525)
                     /locus_tag="PTC08_002558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014614467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1829 domain-containing protein"
                     /protein_id="HDK5683978.1"
                     /translation="DYIRIYLDVLPNNDIRLSDDSLTMNELELAGIDIHTKARSILIQ
                     NVLNQFNLVLDGEEIVTNVKNNSFAQSKHNLIQGILKIYDLTLTTKSNVSRLFYEEVF
                     DFLYNEEILGSAKVSVSGESGIKYFIDFILPETKSKPEKLINFANHLDFNKVTTDAFM
                     YRDVKHNRPSRSGLAPQMLIVANDVEHPITAKARQAAEHEHLSILHWSDKDRIKAILT
                     Q"
BASE COUNT          520 a          208 c          283 g          514 t
ORIGIN      
        1 gttctataaa gatatcttaa aagcgacatt attagttgaa gggaagcata cagcttattt
       61 tacactagga ggtgtttggt tagcactaaa cgaggaaaag aacatatcta gaaatgagat
      121 aaaacaatca tacacacata ttgcattttc tataagtgaa agtgactttg acagttggta
      181 ctattggcta aagtgtaatc aagtgaatat attaaagggg agagaaagaa atataaaaga
      241 caagcaatcg atttatttta cagatcatga tggtcataaa atagagttac ataccggtac
      301 tttacaagag cgtttagact attatcaaca agaaaaaaca catatgaaat tttttaagca
      361 ttaaacacga atcactttta ttaaggaagt gatggtgctg ttaatacaca attacttgaa
      421 ggaggcatta aataattgaa tacgaatgga aacatttgaa gcctgaaaat cgggaaagtg
      481 ggcaatttat tgaggttttg catccagatt ttaaagagtt tggtatgtcg ggaaaagtgt
      541 atgataggag tgactttgaa tgtattgaat tacatgtagc tgagtatgaa ataagtgatt
      601 ttcaagttga tcatttagca gaagattgta gattatgtac atatactttg atagatcata
      661 cgcggcacat taagacaaat agaacatcaa tctggaaaat gcatgagggt gattggaagt
      721 tattgtttca tcaaggaaca gtgaaacaag atccatatta acatggaaaa gcacctaaga
      781 ctttgagaaa gtctaggtgc agttttattc ttagctggaa atattgaatt ggagttattt
      841 caactttgaa tcttctgtta ttactttact gtgtcaaaat ggcttttatc ctatctttat
      901 ctgaccaatg taatattgaa agatgttcat gctctgctgc ttgacgggct ttagctgtaa
      961 ttggatgctc aacgtcattt gcgacgatga gcatttgagg ggctaatccg cttctactag
     1021 gtctattatg tttaacatct ctgtacataa aagcatcagt cgtcacttta ttaaaatcta
     1081 gatggtttgc aaaattgata agtttttcag gttttgattt tgtttccggt aaaatgaaat
     1141 caataaaata tttgattcct gattctcctg aaactgaaac ctttgccgaa cctagaattt
     1201 cttcgttgta taaaaaatcg aatacttctt cataaaagag tcgtgacaca tttgactttg
     1261 tcgttaatgt taaatcatat atttttaaaa tcccttgtat caagttatgt tttgactgag
     1321 cgaaactatt atttttgaca ttagtgacaa tttcttctcc atctaaaacg aggttaaatt
     1381 ggtttaacac attttgaatg agtatacttc tggcttttgt atgaatatca atacctgcga
     1441 gctcaagttc attcattgtt aaactatcgt cagataatcg aatgtcgtta ttgggtaata
     1501 catcaagata tattctaata taatc
//
LOCUS       DANHOL010000365         1047 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.guided.288, whole genome shotgun sequence.
ACCESSION   DANHOL010000365 DANHOL010000000
VERSION     DANHOL010000365.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 1047)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1047)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1047
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.guided.288"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            <1..633
                     /gene="erm"
                     /locus_tag="PTC08_002559"
     CDS             <1..633
                     /gene="erm"
                     /locus_tag="PTC08_002559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011018369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S ribosomal RNA methyltransferase Erm"
                     /protein_id="HDK5683979.1"
                     /translation="IGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKLNIRVTL
                     IHQDILQFQFPNKQRYKIVGSIPYHLSTQIIKKVVFESHASDIYLIVEEGFYKRTLDI
                     HRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDKYWKLYTYFVS
                     KWVNREYRQLFTKNQFHQAMKHAKVNNLSTVTYEQVLSIFNSYLLFNGRK"
     gene            779..>1047
                     /locus_tag="PTC08_002560"
     CDS             779..>1047
                     /locus_tag="PTC08_002560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002326770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="topoisomerase DNA-binding C4 zinc finger
                     domain-containing protein"
                     /protein_id="HDK5683980.1"
                     /translation="MPTKRSGPLVGKCPKCGNNIVLKKSFYGCSNYPECKFTLAEHFR
                     KKKLTKTNVKELLEGKETLVKGIKNKEKKPYNAVVKIGEKGYIDF"
BASE COUNT          382 a          176 c          189 g          300 t
ORIGIN      
        1 attggaacag gtaaagggca tttaacgacg aaactggcta aaataagtaa acaggtaacg
       61 tctattgaat tagacagtca tctattcaac ttatcgtcag aaaaattaaa actgaacatt
      121 cgtgtcactt taattcacca agatattcta cagtttcaat tccctaacaa acagaggtat
      181 aaaattgttg ggagtattcc ttaccattta agcacacaaa ttattaaaaa agtggttttt
      241 gaaagccatg cgtctgacat ctatctgatt gttgaagaag gattctacaa gcgtaccttg
      301 gatattcacc gaacactagg gttgctcttg cacactcaag tctcgattca gcaattgctt
      361 aagctgccag cggaatgctt tcatcctaaa ccaaaagtaa acagtgtctt aataaaactt
      421 acccgccata ccacagatgt tccagataaa tattggaagc tatatacgta ctttgtttca
      481 aaatgggtca atcgagaata tcgtcaactg tttactaaaa atcagtttca tcaagcaatg
      541 aaacacgcca aagtaaacaa tttaagtacc gttacttatg agcaagtatt gtctattttt
      601 aatagttatc tattatttaa cgggaggaaa taattctatg agtcgctttt ttaaatttgg
      661 aaagttacac gttactaaag ggaatggaga taaattatta gatatactac tgacagcttc
      721 caagaagcta aagaggtccc tagcgcctac ggggaatttg tatcgataag gggtacaaat
      781 tcccactaag cgctcgggac cccttgtagg aaaatgtcct aagtgtggca acaatattgt
      841 attaaaaaaa tcgttttatg gttgttcaaa ttatcctgaa tgtaagttta ctttagctga
      901 acattttaga aagaaaaaac taaccaaaac gaatgtaaaa gaattactgg agggaaaaga
      961 aaccctggta aaaggaatca aaaacaaaga gaaaaagccc tacaatgccg ttgtaaaaat
     1021 tggggaaaag ggatatattg attttat
//
LOCUS       DANHOL010000366         1026 bp    DNA     linear   BCT 09-FEB-2023
DEFINITION  TPA_asm: Staphylococcus pseudintermedius isolate BI-1997
            SAMN29010974-rid17016293.guided.290, whole genome shotgun sequence.
ACCESSION   DANHOL010000366 DANHOL010000000
VERSION     DANHOL010000366.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN29010974
            Sequence Read Archive: SRR19635847
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Staphylococcus pseudintermedius
  ORGANISM  Staphylococcus pseudintermedius
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus; Staphylococcus intermedius group.
REFERENCE   1  (bases 1 to 1026)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1026)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 08-FEB-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001610971.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001610971.1
            Genome Coverage       :: 103x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 02/09/2023 06:15:04
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,561
            CDSs (total)                      :: 2,495
            Genes (coding)                    :: 2,441
            CDSs (with protein)               :: 2,441
            Genes (RNA)                       :: 66
            rRNAs                             :: 4, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 4 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 53
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 54
            CDSs (without protein)            :: 54
            Pseudo Genes (ambiguous residues) :: 0 of 54
            Pseudo Genes (frameshifted)       :: 25 of 54
            Pseudo Genes (incomplete)         :: 24 of 54
            Pseudo Genes (internal stop)      :: 14 of 54
            Pseudo Genes (multiple problems)  :: 9 of 54
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1026
                     /organism="Staphylococcus pseudintermedius"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN29010974-rid17016293.guided.290"
                     /isolate="BI-1997"
                     /host="dog"
                     /db_xref="taxon:283734"
                     /country="Argentina"
                     /collection_date="2016"
     gene            7..>1026
                     /locus_tag="PTC08_002561"
     CDS             7..>1026
                     /locus_tag="PTC08_002561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000952924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metalloprotease"
                     /protein_id="HDK5683981.1"
                     /translation="MLSSFLMLSIISSLLTICVIFLVRMLYIKYTQNIMSHKIWLLVL
                     VSTLIPLIPFYKISNFTFSKDMMNRNVSDTTSSVSHMLDGQQSSVTKDLAINVNQFET
                     SNITYMILLIWVFGSLLCLFYMIKAFRQIDVIKSSSLESSYLNERLKVCQSKMQFYKK
                     HITISYSSNIDNPMVFGLVKSQIVLPTVVVETMNDKEIEYIILHELSHVKSHDLIFNQ
                     LYVVFKMIFWFNPALYISKTMMDNDCEKVCDRNVLKILNRHEHIRYGESILKCSILKS
                     QHINNVAAQYLLGFNSNIKERVKYIALYDSMPKPNRNKRIVAYIVCSISLLIQAPLLS
                     AHVQQD"
BASE COUNT          358 a          144 c          159 g          365 t
ORIGIN      
        1 tagaaggtgt tatcatcttt tttaatgtta agtataatca gttcattgct cacgatatgt
       61 gtaatttttt tagtgagaat gctctatata aaatatactc aaaatattat gtcacataag
      121 atttggttat tagtgctcgt ctccacgtta attccattaa taccatttta caaaatatcg
      181 aattttacat tttcaaaaga tatgatgaat cgaaatgtat ctgacacgac ttcttcggtt
      241 agtcatatgt tagatggtca acaatcatct gttacgaaag acttagcaat taatgttaat
      301 cagtttgaga cctcaaatat aacgtatatg attcttttga tatgggtatt tggtagtttg
      361 ttgtgcttat tttatatgat taaggcattc cgacaaattg atgttattaa aagttcgtca
      421 ttggaatcgt catatcttaa tgaacgactt aaagtatgtc aaagtaagat gcagttctac
      481 aaaaagcata taacaattag ttatagttca aacattgata atccgatggt atttggttta
      541 gtgaaatccc aaattgtact accaactgtc gtagtcgaaa ccatgaatga caaagaaatt
      601 gaatatatta ttctacatga actatcacat gtgaaaagtc atgacttaat attcaaccag
      661 ctttatgttg tttttaaaat gatattctgg tttaatcctg cactatatat aagtaaaaca
      721 atgatggaca atgactgtga aaaagtatgt gatagaaacg ttttaaaaat tttgaatcgc
      781 catgaacata tacgttatgg tgaatcgata ttaaaatgct ctattttaaa atctcagcac
      841 ataaataatg tggcagcaca atatttacta ggttttaatt caaatattaa agaacgtgtt
      901 aagtatattg cactttatga ttcaatgcct aaacctaatc gaaacaagcg tattgttgcg
      961 tatattgtat gtagtatatc gcttttaata caagcaccgt tactatctgc acatgttcaa
     1021 caagac
//
